Query 007827
Match_columns 588
No_of_seqs 167 out of 2159
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 15:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 4.6E-43 9.9E-48 382.2 41.8 537 19-571 32-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.6E-36 3.4E-41 315.3 33.6 462 18-565 15-491 (498)
3 PRK10207 dipeptide/tripeptide 100.0 3E-34 6.4E-39 312.6 40.8 464 20-567 10-482 (489)
4 TIGR00924 yjdL_sub1_fam amino 100.0 8.8E-34 1.9E-38 308.5 39.4 452 20-565 6-472 (475)
5 PRK15462 dipeptide/tripeptide 100.0 5.5E-33 1.2E-37 298.9 39.8 449 20-553 5-469 (493)
6 PRK09584 tppB putative tripept 100.0 2.5E-32 5.5E-37 298.8 41.1 460 19-567 16-485 (500)
7 PRK05122 major facilitator sup 99.9 1.9E-23 4.1E-28 222.5 36.4 375 23-561 14-389 (399)
8 PRK03545 putative arabinose tr 99.9 2.7E-23 5.9E-28 220.9 32.9 372 23-562 8-381 (390)
9 TIGR00926 2A1704 Peptide:H+ sy 99.9 9.4E-24 2E-28 234.9 29.4 337 38-437 1-344 (654)
10 PRK11551 putative 3-hydroxyphe 99.9 3.9E-23 8.4E-28 220.6 32.2 174 21-226 12-185 (406)
11 PRK10489 enterobactin exporter 99.9 6.3E-23 1.4E-27 220.0 32.4 390 28-573 21-411 (417)
12 PRK12382 putative transporter; 99.9 1.4E-22 3.1E-27 215.3 34.4 375 23-560 14-388 (392)
13 COG2814 AraJ Arabinose efflux 99.9 2.4E-22 5.3E-27 207.5 33.1 379 20-565 9-390 (394)
14 TIGR01299 synapt_SV2 synaptic 99.9 1.9E-22 4.1E-27 227.1 34.8 154 44-228 186-352 (742)
15 PRK10077 xylE D-xylose transpo 99.9 1.1E-22 2.4E-27 221.9 30.0 409 56-575 51-471 (479)
16 PRK10054 putative transporter; 99.9 1.1E-22 2.3E-27 216.8 28.5 174 22-227 5-178 (395)
17 PRK11663 regulatory protein Uh 99.9 3.3E-22 7.2E-27 215.7 31.9 163 30-224 29-191 (434)
18 PRK11646 multidrug resistance 99.9 3.4E-22 7.3E-27 213.3 31.3 168 27-226 13-180 (400)
19 PRK10504 putative transporter; 99.9 7.4E-22 1.6E-26 215.1 34.6 178 24-233 10-187 (471)
20 PRK10213 nepI ribonucleoside t 99.9 1.6E-21 3.5E-26 207.6 33.1 175 18-224 14-188 (394)
21 TIGR00899 2A0120 sugar efflux 99.9 1.7E-21 3.7E-26 205.2 32.6 169 32-229 5-174 (375)
22 PRK09705 cynX putative cyanate 99.9 1.9E-21 4.1E-26 207.1 32.5 361 41-568 26-388 (393)
23 TIGR00887 2A0109 phosphate:H+ 99.9 1.4E-21 3E-26 214.9 32.2 178 23-226 15-220 (502)
24 TIGR00900 2A0121 H+ Antiporter 99.9 7.3E-22 1.6E-26 206.3 28.6 353 30-520 5-363 (365)
25 PRK15402 multidrug efflux syst 99.9 2.2E-21 4.8E-26 207.2 32.9 157 40-228 29-185 (406)
26 PRK09556 uhpT sugar phosphate 99.9 5.1E-22 1.1E-26 216.3 28.3 156 48-229 52-210 (467)
27 PRK09874 drug efflux system pr 99.9 1E-21 2.2E-26 209.5 29.7 378 26-561 16-398 (408)
28 PRK14995 methyl viologen resis 99.9 1.3E-21 2.7E-26 214.7 31.1 403 23-520 5-413 (495)
29 TIGR00893 2A0114 d-galactonate 99.9 1.4E-21 2.9E-26 205.9 29.8 155 45-230 14-168 (399)
30 TIGR02332 HpaX 4-hydroxyphenyl 99.9 1.5E-21 3.2E-26 209.1 30.4 181 21-233 5-191 (412)
31 TIGR00879 SP MFS transporter, 99.9 2.1E-21 4.5E-26 210.1 31.9 142 59-228 70-214 (481)
32 TIGR00890 2A0111 Oxalate/Forma 99.9 1.3E-21 2.9E-26 205.2 28.5 156 40-228 19-174 (377)
33 PRK10642 proline/glycine betai 99.9 2.9E-21 6.4E-26 211.6 32.3 175 23-221 15-203 (490)
34 TIGR00903 2A0129 major facilit 99.9 1.8E-21 3.9E-26 205.0 29.2 157 43-232 10-166 (368)
35 TIGR00892 2A0113 monocarboxyla 99.9 7.5E-22 1.6E-26 214.2 26.2 154 44-230 39-193 (455)
36 PRK10406 alpha-ketoglutarate t 99.9 9.4E-21 2E-25 204.3 34.1 173 26-222 24-210 (432)
37 PRK11273 glpT sn-glycerol-3-ph 99.9 5.7E-21 1.2E-25 207.2 31.6 156 46-229 50-206 (452)
38 PRK12307 putative sialic acid 99.9 6.9E-21 1.5E-25 204.6 31.5 164 23-218 17-180 (426)
39 PRK09952 shikimate transporter 99.9 2E-20 4.3E-25 202.1 34.4 176 21-220 19-209 (438)
40 TIGR00891 2A0112 putative sial 99.9 6.8E-21 1.5E-25 202.3 29.9 172 20-223 8-181 (405)
41 cd06174 MFS The Major Facilita 99.9 9.6E-21 2.1E-25 196.3 30.2 345 29-558 4-349 (352)
42 TIGR00898 2A0119 cation transp 99.9 1.2E-20 2.6E-25 207.4 31.9 146 50-229 114-262 (505)
43 PRK10091 MFS transport protein 99.9 1.7E-20 3.8E-25 198.8 31.7 169 26-226 5-173 (382)
44 PF07690 MFS_1: Major Facilita 99.9 2.1E-21 4.6E-26 202.0 24.3 168 31-229 3-170 (352)
45 COG2271 UhpC Sugar phosphate p 99.9 4.3E-21 9.2E-26 195.9 25.1 176 27-233 28-208 (448)
46 PRK09528 lacY galactoside perm 99.9 1.1E-20 2.4E-25 202.9 29.2 393 24-562 10-404 (420)
47 PRK03699 putative transporter; 99.9 2.5E-20 5.3E-25 198.5 31.6 173 22-226 5-178 (394)
48 TIGR00711 efflux_EmrB drug res 99.9 1.1E-20 2.5E-25 206.2 29.7 395 30-519 8-409 (485)
49 TIGR00897 2A0118 polyol permea 99.9 8.3E-20 1.8E-24 195.0 35.3 171 21-219 10-181 (402)
50 TIGR00710 efflux_Bcr_CflA drug 99.9 3.9E-20 8.3E-25 195.4 32.3 175 24-230 5-179 (385)
51 PLN00028 nitrate transmembrane 99.9 1.5E-20 3.2E-25 205.2 29.3 173 24-229 36-217 (476)
52 PRK15011 sugar efflux transpor 99.9 8.7E-20 1.9E-24 194.3 33.7 177 26-232 17-195 (393)
53 PRK03893 putative sialic acid 99.9 4.4E-20 9.5E-25 202.4 31.2 166 21-218 17-182 (496)
54 PRK03633 putative MFS family t 99.9 5.2E-20 1.1E-24 195.0 30.4 157 23-211 5-161 (381)
55 TIGR00894 2A0114euk Na(+)-depe 99.9 6.1E-20 1.3E-24 199.8 31.5 150 54-232 70-220 (465)
56 PRK15403 multidrug efflux syst 99.9 8.3E-20 1.8E-24 195.7 30.9 156 42-229 34-189 (413)
57 TIGR00895 2A0115 benzoate tran 99.9 6.1E-20 1.3E-24 194.2 29.3 172 23-226 16-187 (398)
58 PRK11195 lysophospholipid tran 99.9 2.3E-19 5E-24 191.0 32.9 163 26-224 5-167 (393)
59 TIGR00902 2A0127 phenyl propri 99.9 4.1E-19 8.8E-24 188.4 34.6 357 29-554 9-372 (382)
60 PRK11043 putative transporter; 99.9 2.1E-19 4.7E-24 191.5 32.6 164 35-229 14-179 (401)
61 PRK11652 emrD multidrug resist 99.9 2.8E-19 6E-24 190.2 33.2 173 21-225 5-177 (394)
62 TIGR00712 glpT glycerol-3-phos 99.9 6.3E-20 1.4E-24 198.2 27.8 155 47-229 49-204 (438)
63 TIGR00881 2A0104 phosphoglycer 99.9 5.5E-20 1.2E-24 193.0 25.1 153 46-229 16-169 (379)
64 TIGR00889 2A0110 nucleoside tr 99.9 9.2E-19 2E-23 187.9 33.8 387 32-566 10-407 (418)
65 KOG0569 Permease of the major 99.9 1E-19 2.2E-24 193.6 24.7 398 63-579 63-472 (485)
66 PRK15075 citrate-proton sympor 99.9 7.5E-19 1.6E-23 189.6 31.8 170 25-218 16-199 (434)
67 TIGR00882 2A0105 oligosacchari 99.9 7.7E-19 1.7E-23 187.1 31.4 177 26-228 4-180 (396)
68 PRK10133 L-fucose transporter; 99.9 8.3E-19 1.8E-23 189.3 31.6 153 23-204 25-177 (438)
69 TIGR00792 gph sugar (Glycoside 99.9 1E-18 2.2E-23 188.3 32.3 354 34-522 9-382 (437)
70 PRK11102 bicyclomycin/multidru 99.8 8.1E-19 1.7E-23 185.2 30.7 155 42-228 9-163 (377)
71 KOG0254 Predicted transporter 99.8 2.8E-19 6E-24 197.0 28.2 404 61-578 90-500 (513)
72 PF05977 MFS_3: Transmembrane 99.8 1.8E-18 3.8E-23 188.9 33.9 380 26-558 12-391 (524)
73 PRK10473 multidrug efflux syst 99.8 2.6E-18 5.7E-23 182.6 33.4 166 30-227 9-174 (392)
74 PRK15034 nitrate/nitrite trans 99.8 2.2E-18 4.7E-23 184.2 32.1 179 24-230 34-231 (462)
75 PRK11010 ampG muropeptide tran 99.8 6.4E-18 1.4E-22 185.0 34.9 175 23-228 11-192 (491)
76 KOG1330 Sugar transporter/spin 99.8 3.2E-20 7E-25 191.1 15.5 181 21-233 30-211 (493)
77 PRK11128 putative 3-phenylprop 99.8 6.8E-18 1.5E-22 179.0 32.8 155 33-223 13-171 (382)
78 PRK08633 2-acyl-glycerophospho 99.8 4.4E-18 9.4E-23 205.2 34.1 154 25-206 10-165 (1146)
79 PF00854 PTR2: POT family; In 99.8 2.2E-20 4.9E-25 197.3 11.9 365 92-503 2-369 (372)
80 TIGR00886 2A0108 nitrite extru 99.8 1.4E-18 3.1E-23 182.3 24.4 158 27-215 4-171 (366)
81 KOG0252 Inorganic phosphate tr 99.8 2.2E-19 4.7E-24 184.1 16.4 417 57-577 81-513 (538)
82 PRK06814 acylglycerophosphoeth 99.8 8.6E-18 1.9E-22 202.5 32.7 136 60-225 52-189 (1140)
83 COG2223 NarK Nitrate/nitrite t 99.8 5.1E-18 1.1E-22 173.7 26.0 392 20-564 10-404 (417)
84 KOG2532 Permease of the major 99.8 1.7E-18 3.8E-23 185.9 23.1 155 53-236 66-221 (466)
85 TIGR00883 2A0106 metabolite-pr 99.8 5.8E-18 1.2E-22 178.6 26.5 164 37-224 6-184 (394)
86 TIGR00885 fucP L-fucose:H+ sym 99.8 4.1E-17 8.9E-22 174.6 29.9 155 42-224 20-200 (410)
87 PRK11902 ampG muropeptide tran 99.8 1.7E-16 3.7E-21 169.4 34.2 165 30-225 5-176 (402)
88 TIGR00896 CynX cyanate transpo 99.8 2.4E-17 5.1E-22 172.8 26.9 145 43-221 19-165 (355)
89 PRK10429 melibiose:sodium symp 99.8 1.3E-16 2.9E-21 174.0 32.9 171 32-226 14-196 (473)
90 TIGR00901 2A0125 AmpG-related 99.8 1.5E-16 3.2E-21 166.8 29.1 153 46-228 10-175 (356)
91 TIGR01301 GPH_sucrose GPH fami 99.8 4.3E-16 9.2E-21 167.6 32.3 441 29-565 9-475 (477)
92 PF03825 Nuc_H_symport: Nucleo 99.8 1E-15 2.2E-20 162.5 32.6 382 31-565 9-399 (400)
93 PRK09848 glucuronide transport 99.8 4.7E-16 1E-20 168.5 30.1 148 32-202 16-173 (448)
94 PRK09669 putative symporter Ya 99.7 2.1E-15 4.5E-20 163.3 32.0 172 32-226 17-199 (444)
95 COG0738 FucP Fucose permease [ 99.7 2.4E-15 5.3E-20 153.2 29.6 137 41-205 29-165 (422)
96 KOG0255 Synaptic vesicle trans 99.7 2.5E-15 5.4E-20 166.0 32.3 390 53-572 111-503 (521)
97 PF00083 Sugar_tr: Sugar (and 99.7 2.8E-21 6.1E-26 209.2 -15.4 397 61-574 47-449 (451)
98 TIGR02718 sider_RhtX_FptX side 99.7 9.2E-15 2E-19 155.4 32.8 176 27-230 4-183 (390)
99 TIGR00788 fbt folate/biopterin 99.7 6.2E-15 1.4E-19 160.3 31.7 174 27-229 29-207 (468)
100 PF01306 LacY_symp: LacY proto 99.7 1.7E-15 3.8E-20 158.4 25.9 381 31-564 14-403 (412)
101 KOG0253 Synaptic vesicle trans 99.7 4.7E-15 1E-19 148.2 27.0 419 40-569 93-527 (528)
102 PF13347 MFS_2: MFS/sugar tran 99.7 1.9E-15 4E-20 162.9 26.4 357 34-522 11-386 (428)
103 PF06609 TRI12: Fungal trichot 99.7 2.2E-14 4.9E-19 156.6 32.3 150 46-228 65-214 (599)
104 TIGR00805 oat sodium-independe 99.7 1.7E-15 3.6E-20 170.2 23.6 193 33-232 41-282 (633)
105 PRK11462 putative transporter; 99.7 1.9E-14 4.1E-19 156.4 30.1 175 31-228 16-201 (460)
106 KOG2615 Permease of the major 99.7 2.6E-15 5.6E-20 151.1 20.7 120 54-205 62-181 (451)
107 TIGR00806 rfc RFC reduced fola 99.7 1.6E-14 3.4E-19 152.2 26.9 158 40-230 41-202 (511)
108 KOG2504 Monocarboxylate transp 99.7 1.4E-14 3E-19 157.7 26.2 426 29-561 47-476 (509)
109 PTZ00207 hypothetical protein; 99.7 3.3E-13 7.1E-18 148.4 35.0 157 40-226 43-200 (591)
110 KOG3764 Vesicular amine transp 99.6 7.4E-15 1.6E-19 148.7 16.1 147 54-230 100-246 (464)
111 COG2211 MelB Na+/melibiose sym 99.6 9.4E-13 2E-17 139.3 31.2 363 27-521 15-397 (467)
112 KOG2533 Permease of the major 99.6 3.3E-13 7.1E-18 145.7 24.7 151 52-233 73-229 (495)
113 COG2807 CynX Cyanate permease 99.6 2.5E-12 5.5E-17 129.5 28.2 325 47-521 34-360 (395)
114 KOG4686 Predicted sugar transp 99.5 7.1E-13 1.5E-17 128.2 13.5 136 44-206 63-198 (459)
115 PF11700 ATG22: Vacuole efflux 99.5 1.8E-10 3.8E-15 125.0 32.9 87 459-560 381-467 (477)
116 PF03209 PUCC: PUCC protein; 99.4 5.6E-10 1.2E-14 115.4 32.9 374 52-555 7-392 (403)
117 PRK15011 sugar efflux transpor 99.4 1.6E-11 3.5E-16 130.7 18.9 175 23-229 215-389 (393)
118 COG2271 UhpC Sugar phosphate p 99.3 8E-12 1.7E-16 128.4 12.6 179 24-230 252-433 (448)
119 PRK10642 proline/glycine betai 99.3 4.1E-11 8.9E-16 131.5 17.9 170 31-229 257-428 (490)
120 TIGR00899 2A0120 sugar efflux 99.3 8E-11 1.7E-15 123.8 17.7 164 33-228 208-371 (375)
121 PRK09556 uhpT sugar phosphate 99.3 4.2E-11 9.1E-16 130.6 15.6 174 26-228 260-446 (467)
122 PRK03699 putative transporter; 99.3 5.9E-11 1.3E-15 126.4 16.0 167 27-225 208-374 (394)
123 TIGR00890 2A0111 Oxalate/Forma 99.3 6.5E-11 1.4E-15 124.0 14.9 167 27-223 208-374 (377)
124 KOG2563 Permease of the major 99.3 5.4E-10 1.2E-14 115.7 21.0 382 45-572 65-461 (480)
125 PRK05122 major facilitator sup 99.2 9.3E-11 2E-15 124.9 15.1 170 35-238 227-396 (399)
126 PRK09952 shikimate transporter 99.2 2.9E-10 6.3E-15 122.9 17.0 177 27-230 253-432 (438)
127 TIGR00883 2A0106 metabolite-pr 99.2 1.1E-10 2.5E-15 122.9 13.3 164 26-218 221-388 (394)
128 KOG3626 Organic anion transpor 99.2 3.1E-09 6.6E-14 117.5 24.6 196 34-236 106-348 (735)
129 PRK09705 cynX putative cyanate 99.2 6.4E-10 1.4E-14 118.5 19.0 176 26-233 207-383 (393)
130 TIGR00889 2A0110 nucleoside tr 99.2 2.5E-10 5.3E-15 122.7 15.8 176 29-232 213-403 (418)
131 cd06174 MFS The Major Facilita 99.2 2.5E-10 5.4E-15 118.1 15.0 166 31-227 182-348 (352)
132 PRK09874 drug efflux system pr 99.2 3.9E-10 8.4E-15 120.2 16.1 165 34-229 229-396 (408)
133 PRK09528 lacY galactoside perm 99.2 2E-10 4.4E-15 123.3 13.8 160 38-228 237-400 (420)
134 COG2270 Permeases of the major 99.2 1.3E-08 2.7E-13 105.3 25.7 129 43-199 34-170 (438)
135 PRK03545 putative arabinose tr 99.2 1.1E-09 2.4E-14 116.4 18.9 170 30-231 211-380 (390)
136 PRK03893 putative sialic acid 99.2 8.8E-10 1.9E-14 120.9 18.6 148 42-218 293-440 (496)
137 TIGR01272 gluP glucose/galacto 99.2 2.3E-09 5E-14 110.4 20.3 81 136-222 8-104 (310)
138 TIGR00880 2_A_01_02 Multidrug 99.2 1.2E-10 2.5E-15 103.6 8.9 133 66-229 4-136 (141)
139 TIGR01299 synapt_SV2 synaptic 99.2 4.6E-10 9.9E-15 127.3 15.6 134 64-229 599-732 (742)
140 PF03137 OATP: Organic Anion T 99.1 4.8E-12 1E-16 139.0 -0.7 192 38-236 16-255 (539)
141 KOG2325 Predicted transporter/ 99.1 8.4E-10 1.8E-14 117.3 15.6 190 17-233 27-231 (488)
142 PRK11551 putative 3-hydroxyphe 99.1 7.6E-10 1.6E-14 118.1 14.9 165 32-228 228-393 (406)
143 PF03092 BT1: BT1 family; Int 99.1 4.1E-08 8.9E-13 105.8 28.4 162 46-232 11-176 (433)
144 PRK12382 putative transporter; 99.1 9.7E-10 2.1E-14 116.8 15.6 160 36-229 228-387 (392)
145 PRK11273 glpT sn-glycerol-3-ph 99.1 7.2E-10 1.6E-14 120.3 14.5 174 26-228 255-432 (452)
146 COG2814 AraJ Arabinose efflux 99.1 3E-09 6.6E-14 110.6 18.3 178 24-233 211-388 (394)
147 PRK03633 putative MFS family t 99.1 1.4E-09 3E-14 115.2 16.0 154 38-226 214-367 (381)
148 TIGR00893 2A0114 d-galactonate 99.1 1.3E-09 2.8E-14 114.5 15.5 175 25-227 216-395 (399)
149 TIGR00897 2A0118 polyol permea 99.1 2.7E-09 5.8E-14 114.0 17.8 175 26-229 224-399 (402)
150 TIGR00892 2A0113 monocarboxyla 99.1 8.7E-10 1.9E-14 119.8 14.1 170 26-226 243-416 (455)
151 COG2223 NarK Nitrate/nitrite t 99.1 1.3E-09 2.9E-14 112.3 14.2 186 23-233 217-403 (417)
152 TIGR00902 2A0127 phenyl propri 99.1 2.2E-09 4.9E-14 113.8 16.2 168 25-226 206-374 (382)
153 TIGR00891 2A0112 putative sial 99.1 1.1E-09 2.4E-14 116.1 13.9 153 33-215 247-400 (405)
154 PF11700 ATG22: Vacuole efflux 99.1 2.2E-09 4.7E-14 116.5 16.3 186 22-230 279-467 (477)
155 PRK11663 regulatory protein Uh 99.1 1.7E-09 3.6E-14 116.9 15.4 173 27-228 246-421 (434)
156 PRK10489 enterobactin exporter 99.1 2.3E-09 4.9E-14 115.0 16.2 159 40-229 239-397 (417)
157 PRK15075 citrate-proton sympor 99.1 2.7E-09 5.9E-14 115.2 15.6 151 32-210 246-398 (434)
158 PRK11010 ampG muropeptide tran 99.1 3.7E-09 8E-14 116.0 16.8 172 33-231 231-403 (491)
159 KOG2816 Predicted transporter 99.0 3.1E-07 6.8E-12 98.8 30.4 158 41-234 38-202 (463)
160 TIGR00879 SP MFS transporter, 99.0 6E-09 1.3E-13 112.7 16.8 169 43-232 303-471 (481)
161 PLN00028 nitrate transmembrane 99.0 4.6E-09 1E-13 114.8 15.9 171 30-231 258-433 (476)
162 TIGR01272 gluP glucose/galacto 99.0 5.1E-09 1.1E-13 107.8 14.4 146 39-218 155-302 (310)
163 PRK10091 MFS transport protein 99.0 1.1E-08 2.3E-13 108.5 16.8 162 34-226 209-371 (382)
164 PRK10406 alpha-ketoglutarate t 99.0 1.3E-08 2.8E-13 109.9 16.4 167 35-229 254-422 (432)
165 PRK10504 putative transporter; 98.9 1.5E-08 3.2E-13 110.5 16.4 156 26-209 263-418 (471)
166 TIGR00712 glpT glycerol-3-phos 98.9 9.9E-09 2.1E-13 111.0 14.6 178 26-232 253-434 (438)
167 PRK11128 putative 3-phenylprop 98.9 3.3E-08 7.1E-13 104.8 17.2 165 26-224 207-372 (382)
168 PRK15402 multidrug efflux syst 98.9 5.3E-08 1.1E-12 104.0 18.6 163 34-223 225-387 (406)
169 PRK15034 nitrate/nitrite trans 98.9 3.9E-08 8.5E-13 105.7 17.3 186 25-231 253-454 (462)
170 TIGR00792 gph sugar (Glycoside 98.9 7.8E-09 1.7E-13 111.4 12.0 160 25-209 223-383 (437)
171 TIGR00882 2A0105 oligosacchari 98.9 2.4E-08 5.2E-13 106.4 15.2 165 32-227 223-391 (396)
172 TIGR00894 2A0114euk Na(+)-depe 98.9 4.2E-08 9.2E-13 106.8 16.6 176 25-229 262-448 (465)
173 PRK12307 putative sialic acid 98.9 3.5E-08 7.6E-13 105.9 15.7 144 39-214 246-391 (426)
174 TIGR00896 CynX cyanate transpo 98.9 2.4E-08 5.2E-13 104.6 14.0 152 27-210 200-353 (355)
175 KOG4686 Predicted sugar transp 98.9 4.4E-08 9.6E-13 95.4 14.5 179 18-229 258-441 (459)
176 PF05631 DUF791: Protein of un 98.9 5.3E-07 1.2E-11 92.1 22.9 149 53-228 62-213 (354)
177 PRK11902 ampG muropeptide tran 98.9 5.1E-08 1.1E-12 104.1 16.6 154 45-229 230-388 (402)
178 TIGR02718 sider_RhtX_FptX side 98.9 3.1E-08 6.6E-13 105.3 14.7 174 27-225 211-385 (390)
179 KOG3098 Uncharacterized conser 98.9 1.5E-06 3.2E-11 92.6 26.7 104 66-201 56-159 (461)
180 TIGR02332 HpaX 4-hydroxyphenyl 98.8 3.2E-08 6.9E-13 106.2 14.2 161 27-218 245-408 (412)
181 TIGR00881 2A0104 phosphoglycer 98.8 1.5E-08 3.2E-13 106.1 11.2 160 26-213 218-379 (379)
182 PRK09848 glucuronide transport 98.8 1.5E-08 3.1E-13 110.0 11.4 161 26-209 230-391 (448)
183 TIGR00900 2A0121 H+ Antiporter 98.8 4.5E-08 9.8E-13 102.0 14.0 153 26-208 212-365 (365)
184 COG2270 Permeases of the major 98.8 6.1E-08 1.3E-12 100.3 13.8 172 25-227 253-425 (438)
185 PRK10054 putative transporter; 98.8 7.8E-08 1.7E-12 102.5 14.8 173 25-228 207-381 (395)
186 PF13347 MFS_2: MFS/sugar tran 98.8 1.2E-07 2.7E-12 102.1 16.2 162 24-209 225-387 (428)
187 PRK10133 L-fucose transporter; 98.8 1.1E-07 2.3E-12 102.9 15.5 160 31-224 265-426 (438)
188 PF05977 MFS_3: Transmembrane 98.8 1E-07 2.2E-12 104.7 15.3 169 29-228 223-391 (524)
189 PRK10077 xylE D-xylose transpo 98.8 2.8E-07 6E-12 100.6 18.3 161 45-233 292-459 (479)
190 TIGR00710 efflux_Bcr_CflA drug 98.8 2.9E-07 6.3E-12 97.0 17.8 158 30-215 212-370 (385)
191 PRK10213 nepI ribonucleoside t 98.8 3.4E-07 7.3E-12 97.6 18.3 156 34-221 226-381 (394)
192 TIGR00895 2A0115 benzoate tran 98.8 6.1E-08 1.3E-12 102.3 12.5 143 29-203 255-397 (398)
193 TIGR00711 efflux_EmrB drug res 98.8 5.7E-08 1.2E-12 106.1 12.6 154 26-206 257-410 (485)
194 PRK14995 methyl viologen resis 98.8 8.9E-08 1.9E-12 105.3 14.0 150 28-205 263-412 (495)
195 TIGR00887 2A0109 phosphate:H+ 98.7 1.5E-07 3.3E-12 103.6 15.6 165 34-226 298-484 (502)
196 PRK08633 2-acyl-glycerophospho 98.7 2.1E-07 4.6E-12 112.8 17.2 161 27-218 235-397 (1146)
197 PRK10473 multidrug efflux syst 98.7 5.1E-07 1.1E-11 95.9 16.3 69 42-111 221-289 (392)
198 PRK06814 acylglycerophosphoeth 98.6 4.4E-07 9.6E-12 109.9 16.6 181 24-218 225-409 (1140)
199 PRK11195 lysophospholipid tran 98.6 1.2E-06 2.7E-11 93.3 18.0 157 37-225 218-374 (393)
200 COG2807 CynX Cyanate permease 98.6 9.3E-07 2E-11 89.8 15.4 168 26-224 210-378 (395)
201 PRK11646 multidrug resistance 98.6 6.1E-07 1.3E-11 95.8 14.7 152 43-225 227-382 (400)
202 PRK11043 putative transporter; 98.6 1.6E-06 3.5E-11 92.4 17.4 148 36-211 215-362 (401)
203 TIGR00880 2_A_01_02 Multidrug 98.6 1.4E-06 3E-11 77.1 14.1 132 380-562 8-139 (141)
204 PRK09669 putative symporter Ya 98.6 4.4E-07 9.5E-12 98.3 12.7 127 60-209 264-391 (444)
205 PRK10429 melibiose:sodium symp 98.6 2.6E-07 5.7E-12 101.0 10.5 165 24-209 231-396 (473)
206 KOG2504 Monocarboxylate transp 98.6 3.5E-07 7.6E-12 100.0 11.2 173 27-231 301-476 (509)
207 TIGR00903 2A0129 major facilit 98.5 2.7E-06 5.9E-11 89.8 16.9 166 24-227 192-361 (368)
208 TIGR00898 2A0119 cation transp 98.5 7.3E-07 1.6E-11 98.1 12.3 132 67-229 362-493 (505)
209 KOG4332 Predicted sugar transp 98.5 5.5E-06 1.2E-10 80.4 16.2 151 49-225 61-214 (454)
210 PRK11102 bicyclomycin/multidru 98.5 5.2E-06 1.1E-10 87.5 17.6 72 32-104 202-273 (377)
211 KOG3762 Predicted transporter 98.5 5.4E-06 1.2E-10 88.0 17.0 118 410-567 435-553 (618)
212 TIGR00901 2A0125 AmpG-related 98.5 8.4E-07 1.8E-11 92.9 11.1 143 26-189 211-354 (356)
213 PF07690 MFS_1: Major Facilita 98.5 3.1E-06 6.8E-11 87.7 15.1 137 375-562 37-173 (352)
214 KOG0569 Permease of the major 98.4 4.5E-06 9.7E-11 89.8 16.1 189 24-235 269-458 (485)
215 KOG1330 Sugar transporter/spin 98.4 6.9E-08 1.5E-12 100.7 1.9 149 374-572 72-220 (493)
216 TIGR00886 2A0108 nitrite extru 98.4 1.6E-06 3.6E-11 90.7 11.3 138 27-192 228-365 (366)
217 KOG0253 Synaptic vesicle trans 98.4 4.1E-06 9E-11 84.9 12.9 170 24-226 326-514 (528)
218 KOG2532 Permease of the major 98.4 3.7E-06 7.9E-11 91.0 13.4 175 26-230 260-446 (466)
219 TIGR00885 fucP L-fucose:H+ sym 98.4 5.1E-06 1.1E-10 89.1 14.3 149 38-220 246-401 (410)
220 COG2211 MelB Na+/melibiose sym 98.4 6.2E-06 1.3E-10 87.9 14.1 154 32-208 244-398 (467)
221 PRK15403 multidrug efflux syst 98.3 1.4E-05 3E-10 85.8 16.7 135 380-565 61-195 (413)
222 PF03825 Nuc_H_symport: Nucleo 98.3 9.1E-06 2E-10 86.6 14.9 174 31-230 214-394 (400)
223 KOG3764 Vesicular amine transp 98.3 3E-06 6.4E-11 86.9 9.8 141 373-564 109-250 (464)
224 PF01306 LacY_symp: LacY proto 98.3 1.3E-05 2.8E-10 84.6 14.2 176 24-230 220-399 (412)
225 PRK11652 emrD multidrug resist 98.3 1.7E-05 3.6E-10 84.4 15.3 139 44-211 227-365 (394)
226 PRK11462 putative transporter; 98.3 1.2E-05 2.5E-10 87.7 14.3 153 33-209 237-390 (460)
227 PF03209 PUCC: PUCC protein; 98.3 2E-05 4.2E-10 82.0 15.0 170 31-227 215-394 (403)
228 KOG0637 Sucrose transporter an 98.2 8.9E-06 1.9E-10 85.0 10.7 167 24-203 32-202 (498)
229 TIGR00924 yjdL_sub1_fam amino 98.2 1.9E-05 4.1E-10 86.4 13.6 132 380-562 58-193 (475)
230 PF02487 CLN3: CLN3 protein; 98.1 0.0017 3.8E-08 68.3 26.8 63 456-518 333-395 (402)
231 PF06813 Nodulin-like: Nodulin 98.1 0.00011 2.4E-09 72.6 16.1 164 39-229 17-180 (250)
232 PRK15462 dipeptide/tripeptide 98.0 6.5E-05 1.4E-09 81.8 14.0 120 396-561 67-189 (493)
233 PRK10207 dipeptide/tripeptide 98.0 6.3E-05 1.4E-09 82.5 13.9 94 397-520 73-169 (489)
234 TIGR00805 oat sodium-independe 98.0 4.3E-05 9.3E-10 86.4 11.9 64 457-520 171-234 (633)
235 TIGR01301 GPH_sucrose GPH fami 98.0 0.00014 3.1E-09 78.8 15.4 171 374-566 43-223 (477)
236 COG0477 ProP Permeases of the 98.0 0.00022 4.9E-09 70.9 15.7 147 43-218 21-172 (338)
237 PF01770 Folate_carrier: Reduc 97.9 0.0027 5.9E-08 66.9 23.3 156 43-230 22-181 (412)
238 KOG2533 Permease of the major 97.9 3.5E-05 7.5E-10 83.8 9.4 164 26-219 275-444 (495)
239 PRK09584 tppB putative tripept 97.9 0.00016 3.5E-09 79.6 14.6 124 395-564 78-204 (500)
240 COG0738 FucP Fucose permease [ 97.9 0.0002 4.3E-09 74.2 13.4 141 42-216 254-394 (422)
241 PF06963 FPN1: Ferroportin1 (F 97.9 0.018 4E-07 61.6 28.9 187 26-226 4-195 (432)
242 PTZ00207 hypothetical protein; 97.9 0.00033 7.2E-09 77.8 16.1 128 394-564 81-208 (591)
243 PF12832 MFS_1_like: MFS_1 lik 97.9 7.4E-05 1.6E-09 59.7 7.9 67 32-100 8-74 (77)
244 TIGR00806 rfc RFC reduced fola 97.8 0.00078 1.7E-08 72.1 17.3 90 397-518 85-174 (511)
245 KOG2615 Permease of the major 97.7 0.00016 3.5E-09 74.1 8.9 109 375-519 73-181 (451)
246 TIGR00788 fbt folate/biopterin 97.6 0.00014 3E-09 79.4 8.6 136 52-208 280-415 (468)
247 TIGR00769 AAA ADP/ATP carrier 97.6 0.045 9.8E-07 59.3 27.2 168 23-204 6-189 (472)
248 PF06609 TRI12: Fungal trichot 97.6 0.0017 3.8E-08 71.9 16.3 137 373-561 81-217 (599)
249 KOG3762 Predicted transporter 97.5 0.00014 3.1E-09 77.6 5.7 156 43-230 390-546 (618)
250 KOG0254 Predicted transporter 97.5 0.0029 6.2E-08 70.0 15.9 88 22-112 292-380 (513)
251 PF00083 Sugar_tr: Sugar (and 97.4 2.6E-06 5.6E-11 92.2 -8.6 178 32-234 260-439 (451)
252 KOG0255 Synaptic vesicle trans 97.3 0.003 6.4E-08 69.9 13.2 120 394-564 138-257 (521)
253 KOG3574 Acetyl-CoA transporter 97.2 0.082 1.8E-06 54.6 21.2 63 459-521 370-432 (510)
254 KOG0252 Inorganic phosphate tr 97.1 0.00099 2.1E-08 70.0 6.6 179 24-230 304-497 (538)
255 PF05978 UNC-93: Ion channel r 96.9 0.012 2.5E-07 53.9 11.6 112 58-201 35-146 (156)
256 KOG2325 Predicted transporter/ 96.9 0.0097 2.1E-07 64.1 12.6 163 374-569 75-237 (488)
257 COG3104 PTR2 Dipeptide/tripept 96.9 0.0011 2.3E-08 70.8 5.1 122 412-571 93-216 (498)
258 PF06779 DUF1228: Protein of u 96.9 0.0061 1.3E-07 49.3 8.2 71 40-112 8-78 (85)
259 KOG2563 Permease of the major 96.7 0.012 2.7E-07 62.0 11.0 156 54-236 295-455 (480)
260 TIGR00926 2A1704 Peptide:H+ sy 96.5 0.017 3.7E-07 65.4 11.2 96 450-562 557-652 (654)
261 PF06813 Nodulin-like: Nodulin 96.2 0.14 3.1E-06 50.7 14.5 98 397-519 59-156 (250)
262 PF00854 PTR2: POT family; In 96.0 0.042 9.1E-07 58.0 10.6 125 412-567 2-129 (372)
263 PRK03612 spermidine synthase; 96.0 0.27 5.8E-06 54.4 16.8 161 35-223 25-190 (521)
264 PF03137 OATP: Organic Anion T 95.9 0.0016 3.5E-08 72.1 -1.1 66 454-519 137-202 (539)
265 KOG2816 Predicted transporter 95.8 0.23 4.9E-06 54.0 15.1 83 471-569 125-207 (463)
266 KOG3626 Organic anion transpor 95.4 0.15 3.2E-06 57.6 11.9 103 456-565 235-347 (735)
267 PF05631 DUF791: Protein of un 95.2 1.8 3.9E-05 44.9 18.2 140 378-567 77-222 (354)
268 PF05978 UNC-93: Ion channel r 95.2 0.41 8.9E-06 43.8 12.3 62 456-517 87-148 (156)
269 KOG3880 Predicted small molecu 95.1 0.98 2.1E-05 45.6 15.2 62 457-518 341-402 (409)
270 PF03092 BT1: BT1 family; Int 94.9 0.22 4.8E-06 53.8 11.4 117 410-563 58-177 (433)
271 PF13000 Acatn: Acetyl-coenzym 93.4 1 2.2E-05 48.6 12.3 83 482-564 142-224 (544)
272 KOG0637 Sucrose transporter an 92.6 0.39 8.4E-06 51.1 7.7 127 377-516 74-201 (498)
273 PF06963 FPN1: Ferroportin1 (F 92.1 3 6.4E-05 44.9 13.9 137 42-201 276-413 (432)
274 PF03219 TLC: TLC ATP/ADP tran 91.6 14 0.00031 40.4 18.7 139 58-205 56-205 (491)
275 KOG3098 Uncharacterized conser 89.6 7.2 0.00016 42.2 13.9 93 70-169 289-384 (461)
276 PF01770 Folate_carrier: Reduc 87.3 29 0.00063 37.0 16.4 64 456-520 92-155 (412)
277 TIGR00769 AAA ADP/ATP carrier 86.7 53 0.0012 35.9 20.8 56 464-519 134-190 (472)
278 KOG1479 Nucleoside transporter 84.8 58 0.0013 34.6 26.1 57 457-513 342-398 (406)
279 KOG3097 Predicted membrane pro 84.7 11 0.00025 38.6 11.2 103 32-166 36-138 (390)
280 KOG3574 Acetyl-CoA transporter 83.1 5.7 0.00012 41.6 8.4 29 539-567 214-242 (510)
281 COG0477 ProP Permeases of the 82.4 18 0.00038 35.2 11.9 62 458-519 94-157 (338)
282 PF13000 Acatn: Acetyl-coenzym 76.6 1.2E+02 0.0027 33.2 22.3 62 459-520 406-467 (544)
283 TIGR00939 2a57 Equilibrative N 75.2 1.3E+02 0.0027 32.6 34.4 59 457-515 371-429 (437)
284 COG3202 ATP/ADP translocase [E 72.9 1.5E+02 0.0033 32.4 26.7 164 23-206 26-210 (509)
285 PF07857 DUF1632: CEO family ( 72.1 31 0.00068 34.2 9.8 29 489-517 74-102 (254)
286 PF07672 MFS_Mycoplasma: Mycop 69.5 1.3E+02 0.0027 30.1 14.3 47 188-236 14-67 (267)
287 PF02487 CLN3: CLN3 protein; 69.2 35 0.00075 36.4 10.1 107 412-562 90-196 (402)
288 PF03219 TLC: TLC ATP/ADP tran 62.5 2.5E+02 0.0053 30.9 21.4 42 478-519 164-205 (491)
289 PRK03612 spermidine synthase; 60.5 1.9E+02 0.0042 32.0 14.3 52 466-518 118-169 (521)
290 TIGR00939 2a57 Equilibrative N 59.6 39 0.00086 36.5 8.6 57 137-199 371-427 (437)
291 PF07672 MFS_Mycoplasma: Mycop 58.6 1.1E+02 0.0025 30.4 10.7 47 137-187 203-249 (267)
292 KOG4332 Predicted sugar transp 57.3 69 0.0015 32.2 8.8 140 62-225 284-425 (454)
293 COG5336 Uncharacterized protei 54.8 32 0.0007 29.0 5.2 34 67-100 49-82 (116)
294 COG5336 Uncharacterized protei 53.5 1.3E+02 0.0027 25.6 8.4 38 488-525 36-73 (116)
295 KOG2601 Iron transporter [Inor 50.5 3.4E+02 0.0073 28.9 18.6 76 26-102 29-104 (503)
296 KOG4830 Predicted sugar transp 48.4 27 0.00058 34.7 4.4 59 34-94 27-94 (412)
297 KOG1237 H+/oligopeptide sympor 46.7 1.4E+02 0.003 33.5 10.4 99 454-568 148-252 (571)
298 KOG3810 Micronutrient transpor 43.1 3.3E+02 0.0071 28.7 11.3 95 456-560 324-420 (433)
299 KOG1479 Nucleoside transporter 42.6 51 0.0011 35.0 5.8 114 37-168 256-373 (406)
300 PF09527 ATPase_gene1: Putativ 33.7 1.3E+02 0.0029 21.7 5.4 29 69-97 9-37 (55)
301 TIGR01667 YCCS_YHJK integral m 33.2 1.5E+02 0.0033 34.2 8.2 47 85-154 51-97 (701)
302 PRK10263 DNA translocase FtsK; 31.5 1.5E+02 0.0033 36.3 8.0 17 70-86 62-78 (1355)
303 PF06645 SPC12: Microsomal sig 28.9 1.2E+02 0.0026 24.0 4.6 54 184-240 12-65 (76)
304 PF06679 DUF1180: Protein of u 27.1 82 0.0018 29.0 3.8 27 539-565 94-120 (163)
305 TIGR01666 YCCS hypothetical me 24.7 3.9E+02 0.0085 30.9 9.6 47 85-154 51-97 (704)
306 KOG3810 Micronutrient transpor 24.6 4.1E+02 0.0089 28.0 8.6 82 63-167 274-355 (433)
307 PF06027 DUF914: Eukaryotic pr 22.5 8.8E+02 0.019 25.1 11.3 18 539-556 285-302 (334)
308 KOG4112 Signal peptidase subun 22.3 1.5E+02 0.0032 24.4 4.0 51 183-236 26-76 (101)
309 COG0370 FeoB Fe2+ transport sy 22.0 1.2E+03 0.026 26.6 12.5 77 150-233 388-465 (653)
310 PF06779 DUF1228: Protein of u 21.0 2.6E+02 0.0056 22.7 5.2 63 149-220 5-67 (85)
311 PF01102 Glycophorin_A: Glycop 20.6 1E+02 0.0022 26.9 3.0 24 542-565 70-93 (122)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-43 Score=382.18 Aligned_cols=537 Identities=43% Similarity=0.751 Sum_probs=480.5
Q ss_pred ccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHH
Q 007827 19 NYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFAS 98 (588)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~ 98 (588)
....|+.+.+++..+.++.++++++..++..|++..++.+...+...++.+........+++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCC-CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 99 VASFLGMLVLSLTAAISKLHPPDC-GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
++..+|.+++.++..+|.+.++.| ...+...|..++..+...++.++-+..+|.|+..|+..++.+||+++..+..++.
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 999999999999988999988887 3344457888899999999999999999999999999999999999777888888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHh
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKK 257 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (588)
+.+.|+|+|+..++|..++..+..|+.+..||.+.|.++.+..++++++++...+.++..+|.+++.....+++..+.++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHH
Q 007827 258 RHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWAS 337 (588)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (588)
++...+..+... ...........+++++++++++++..+++. +.....++|+.++.+.+++.|..++.+++++.
T Consensus 272 ~~~~~~~~~~~~----~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~ 345 (571)
T KOG1237|consen 272 RKAVVSLDPEEL----YYDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT 345 (571)
T ss_pred HhccCCCcchhc----cccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence 887765442221 111122233344788999999999887654 55667889999999999999999999999999
Q ss_pred HHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHH
Q 007827 338 AIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIG 417 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g 417 (588)
.+.++..+.|+.+..+.|+..++++.+ +++.+++++...+..+...+..|+.|++..|+.+|..++..+++.+.++++|
T Consensus 346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~~-~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G 424 (571)
T KOG1237|consen 346 TIIYSTVYAQMVTFFVLQATTMDRHLG-SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIG 424 (571)
T ss_pred HHHHHHHHHhhhhheehhhhhcCCCCC-CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeecc
Confidence 999999999999999999999999997 3499999999999999999999999999999999999877779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHH
Q 007827 418 MILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGS 497 (588)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~ 497 (588)
+++..+++...+..+.++.+..... .+++.+.+.+|.+++++++|++|.+..+...++.++++|++||+.+++
T Consensus 425 ~~~si~sm~~aa~vE~krl~~~~~~-------~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~a 497 (571)
T KOG1237|consen 425 LVLSILSMAVAGIVEAKRLKTAVSL-------LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATA 497 (571)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhc-------cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHH
Confidence 9999999999999988777765431 133577999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC-CCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCC
Q 007827 498 LAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP-EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 571 (588)
Q Consensus 498 ~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 571 (588)
++.+..++|+.++.++...+...++. ..+|++ .+.|.++...+|++.+....+....+..+.++++.++.++
T Consensus 498 l~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 498 LWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 99999999999999999988876543 558999 9999999999999999999999999999999888776553
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=315.30 Aligned_cols=462 Identities=18% Similarity=0.266 Sum_probs=347.7
Q ss_pred cccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcC----CCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhH
Q 007827 18 LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFN----MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKT 93 (588)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~ 93 (588)
....++|.++.++..+++|+++|||+...+..|++.+++ +|.+++..+.++|.....+...++||++||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 335578899999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+..+.++.++|.++++.... .....++++..+.++|.|.+.|+..++++|++++++++
T Consensus 95 I~lGail~~iGh~~L~~~~~----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSV----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHHhcccc----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 99999999999999887620 13557899999999999999999999999999998887
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhh--------
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLA-------- 245 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 245 (588)
+. .+++.+|.+.|+|+.++|++.+++.+++||+..|.++++.+.++++.++..++........+++..
T Consensus 153 rD----~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 153 RD----GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred cC----CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 55 469999999999999999999999999999999999999999999988887766543322211110
Q ss_pred hHHHHHHHHHHhh-ccCCCCCCccccccCCCcccccCCCCCCCccchhh-hhcccCcccccccCCCCCCccccchhhHHH
Q 007827 246 STVQVFVAAIKKR-HLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD-KAAIMTPEDQIKSDGSAINPWRLSSMQKVE 323 (588)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (588)
...+......... ..... .+.+.... ...+.... -+-.....|. +.. +
T Consensus 229 ~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~~i~~~~----~~~~~~~~~~---~~~-~ 278 (498)
T COG3104 229 VLGGLVVMILAALLTLLLN----------------------QNTFSGVLLVISILIAI----IYFAEAFRSP---KVF-D 278 (498)
T ss_pred hHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH----HHHHHHhccC---ccH-H
Confidence 0011111111000 00000 00000000 00000000 0000001110 112 5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccc-cccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhc
Q 007827 324 EVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ-SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 402 (588)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 402 (588)
+|++....+++++..++||+.+.|+++.+..++.. .+++.. ++.+++++++++|++.+++++|+.+++ +.+++
T Consensus 279 er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~--g~~vp~~~fQslNp~~Iii~~pI~a~l----~~~l~ 352 (498)
T COG3104 279 ERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF--GFEVPPAWFQSLNPFFIILFSPILAAL----WTKLG 352 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc--ceecCHHHHHhhCHHHHHHHHHHHHHH----HhHhh
Confidence 78888899999999999999999999977777654 444422 588999999999999999999999998 55544
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhh
Q 007827 403 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEF 482 (588)
Q Consensus 403 ~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 482 (588)
++++..+...++++|++++..+++++....... + +.....|.+|+++.+++.++||.+.+|...++
T Consensus 353 ~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~------~--------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~ 418 (498)
T COG3104 353 RGNKQPSTPIKFALGLILAGLGFLILLLAGIWF------G--------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSM 418 (498)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh------c--------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 444558888999999999999988887652211 0 11234899999999999999999999999999
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 483 YYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 483 ~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
+.+.+|+++.+..+|++.++...++.++..+.+.... ++ .. .+......+|+..+.+.++..+..+...+
T Consensus 419 ~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-----~~----~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 419 VTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-----PA----YTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc-----hh----hhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999888773211 00 00 01123456788888888877777776665
Q ss_pred ccc
Q 007827 563 WYK 565 (588)
Q Consensus 563 ~~~ 565 (588)
+.+
T Consensus 489 ~~~ 491 (498)
T COG3104 489 KLN 491 (498)
T ss_pred HHH
Confidence 543
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=3e-34 Score=312.62 Aligned_cols=464 Identities=14% Similarity=0.218 Sum_probs=327.4
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
.+|+|.++.++..++++++++|++..+++.|+++++|++.++++++.+.+.....+..+++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999995599999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.++.+++.++.+ ....++++|.++++|.|.+.|+..++++|++|++++++ .
T Consensus 90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~----~ 142 (489)
T PRK10207 90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL----D 142 (489)
T ss_pred HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh----h
Confidence 99999988887632 12346688999999999999999999999998643322 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeecc--CCCCChhhhHHHHH------
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV--KPEGSPLASTVQVF------ 251 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------ 251 (588)
..++++|.+.|+|.+++|.+++++.+++|||+.|++..+..+++++.+...++..++. ++++++.+.....+
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~ 222 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSV 222 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHH
Confidence 4699999999999999999999999999999999997766655555555554433322 12222221110000
Q ss_pred HHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh
Q 007827 252 VAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV 331 (588)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (588)
.......+....... ..........+... ...++....++ .++++.+..
T Consensus 223 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~i~~~----------~f~~~~~~~~~-~~r~r~~~~ 271 (489)
T PRK10207 223 VMIFVCAWLMHNVEV--------------------ANLVLIVLSIVVTI----------IFFREAFKLDK-TGRNKMFVA 271 (489)
T ss_pred HHHHHHHHHHhhhhH--------------------HHHHHHHHHHHHHH----------HHHHHHhcCCH-HHHHHHHHH
Confidence 000000000000000 00000000000000 00000000011 224445455
Q ss_pred hhHHHHHHHHHHHHhcccceeeeecc-ccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCCh
Q 007827 332 IPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITI 410 (588)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 410 (588)
..+++..+++|..+.|....+..+.. ..++... ++.+++.+++++|++.+++..|+.+++ .+|+++|+.+.++
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~--G~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~ 345 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL--GFSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSM 345 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc--ceEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCc
Confidence 66666788899999998775555443 3444443 577888999999999999999997665 8999888777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcc
Q 007827 411 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 490 (588)
Q Consensus 411 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~ 490 (588)
..++.+|+++.+++++......... ...+ ...+.+|++..+++.++||++.+++.++++.+.+|++
T Consensus 346 ~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~-----------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~ 411 (489)
T PRK10207 346 PMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ-----------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH 411 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---cCCC-----------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH
Confidence 9999999999988876654321100 0001 1357788999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 491 MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 491 ~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
++|.++|++++..++|+.++..+........ +..++.. ....+.++|...+++.++..+++++..|+.++.
T Consensus 412 ~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~--~~~~~~~----~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 412 LMGFILGMWFLTQAAAFLLGGYVATFTAVPD--NITDPLE----TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886553100 0000100 012467889889988888888887777665443
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=8.8e-34 Score=308.54 Aligned_cols=452 Identities=16% Similarity=0.225 Sum_probs=324.6
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHh--cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI--FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
.+++|.++.+.+.++++.+++|++.++++.|++++ +|+|..+++++.+.+.++..++.+++|+++||++||||++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 35677788888999999999999999999999987 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 98 SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 98 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
.++.+++.++++++ .+.+.+++++.+.|+|.|...|+..++++|+++++++. .
T Consensus 86 ~~~~~~g~~~~~~~------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMS------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---R 138 (475)
T ss_pred HHHHHHHHHHHHhc------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---c
Confidence 99999988877765 23556778999999999999999999999999754321 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhh-----HHH---
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAS-----TVQ--- 249 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--- 249 (588)
++.+++++|.+.|+|.++||.+++++.+++||++.|++.++..+++++.+...++.+++.++++++.+. ..+
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA 218 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence 345799999999999999999999999989999999998876666666555555444332222211110 000
Q ss_pred ---HHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccch-hhhhcccCcccccccCCCCCCccccchhhHHHHH
Q 007827 250 ---VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEV 325 (588)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (588)
.+....+..+..... . ..+.... ..........+ ... .+ +.+.. ++
T Consensus 219 ~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~-~~~-----~~----~~~~~-~~ 268 (475)
T TIGR00924 219 LLAALALVFFCAWLMHHV-V------------------IANILLMTVTLAVIIFFFR-LAF-----KP----RLDAV-AR 268 (475)
T ss_pred HHHHHHHHHHHHHHHhcc-H------------------HHHHHHHHHHHHHHHHHHH-HHH-----hc----cCCHH-HH
Confidence 000000100000000 0 0000000 00000000000 000 00 00111 23
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccceeee-eccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccC
Q 007827 326 KVLIRVIPIWASAIVYYVALVQQQTYVVF-QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 404 (588)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k 404 (588)
++....+++++..+++|..+.|..+.+.. +....+.+.+ ++.+++++++++|++.+++..|+.+++ ..++.||
T Consensus 269 ~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~--~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~ 342 (475)
T TIGR00924 269 NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML--GMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRK 342 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--ceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhC
Confidence 33344677788888999999999985443 3344555554 677899999999999999999997765 5666666
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 007827 405 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYY 484 (588)
Q Consensus 405 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 484 (588)
.++.+...++.+|+++.++++...+...+. . + ++...+.+|+++++++.++||.+..|..+++++
T Consensus 343 ~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~--~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~ 407 (475)
T TIGR00924 343 GKDPTTPLKFTLGMLFCGASFLTFAASIWF----A--D---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWT 407 (475)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----c--C---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 545677778899999999998887754211 0 0 123478999999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 485 KQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 485 ~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
+.+|+++||+++|++.+...+|+.+++.+.+...+.. +..+.|...+++.++..+++++..|+.
T Consensus 408 ~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
T TIGR00924 408 KIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------------GVTGVFGKIGLVTLLVGVVMALMVPWL 471 (475)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887664422 234577777777777777777766654
Q ss_pred c
Q 007827 565 K 565 (588)
Q Consensus 565 ~ 565 (588)
+
T Consensus 472 ~ 472 (475)
T TIGR00924 472 N 472 (475)
T ss_pred H
Confidence 3
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=5.5e-33 Score=298.94 Aligned_cols=449 Identities=14% Similarity=0.191 Sum_probs=316.2
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
.+|+|.++.++..++.+++.+|++..+++.|+++++|++..+++.+.+.+.....++.+++|+++||++||||+++++.+
T Consensus 5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999993399999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+..++.+++.... .+...++++..+..+|.|...++..++++|++|+++++| .
T Consensus 85 l~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R----~ 137 (493)
T PRK15462 85 LMAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRR----D 137 (493)
T ss_pred HHHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccc----c
Confidence 9988877665421 112234555566678888888888999999997643333 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCC-CCChhh--hHHH---HHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKP-EGSPLA--STVQ---VFVA 253 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~ 253 (588)
++++++|...|+|+.++|.+.+++.+.+||++.|.+.++.++++++.++..++...+..+ ++++.. .... ....
T Consensus 138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLL 217 (493)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHH
Confidence 569999999999999999999999999999999999887777777766665544333211 111111 0000 0000
Q ss_pred H-------HHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhh-hcccCcccccccCCCCCCccccchhhHHHHH
Q 007827 254 A-------IKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDK-AAIMTPEDQIKSDGSAINPWRLSSMQKVEEV 325 (588)
Q Consensus 254 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (588)
. .......... ......... .....- .+-.......++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~er 264 (493)
T PRK15462 218 VLLVATPALITVLFWKEW---------------------SVYALIVATIIGLGVL------------AKIYRKAENQKQR 264 (493)
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH------------HHHHHhcCCHHHH
Confidence 0 0000000000 000000000 000000 0000000112457
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccceeeeec-cccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccC
Q 007827 326 KVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 404 (588)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k 404 (588)
+++..++++.+..++||..+.|.++.+..+. ..++++++ ++.+|+.+++++|++.+++.+|+...+ +.|+.||
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~--g~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~ 338 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF--GYTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAG 338 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc--ceeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcC
Confidence 7888888899999999999999999655544 56788776 789999999999999999999998776 6777555
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 007827 405 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYY 484 (588)
Q Consensus 405 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 484 (588)
+++++...++.+|++++++++.++....... ..+ ...+.+|++..+++.++||.+..|...+++.
T Consensus 339 ~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~-----------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~ 403 (493)
T PRK15462 339 NRTVRIWGKFALGLGLMSAGFCILTLSARWS----AMY-----------GHSSLPLMVLGLAVMGFAELFIDPVAMSQIT 403 (493)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC-----------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 5567888999999999999988776543210 001 1278889999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 007827 485 KQFPENMRSIGGSLAFVGF-AISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 553 (588)
Q Consensus 485 ~~~P~~~rg~~~~~~~~~~-~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~ 553 (588)
+.+|+|.||+.||++.+.. .+|+.+++.+.........+ +-.........+...|...+.+.++.
T Consensus 404 ~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 404 RIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD----ASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----ccccccchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998744 68888887777655321000 00000001124566777777766655
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=2.5e-32 Score=298.80 Aligned_cols=460 Identities=15% Similarity=0.252 Sum_probs=320.8
Q ss_pred ccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHH
Q 007827 19 NYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFAS 98 (588)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~ 98 (588)
..+++|.++.++..++++.+++|++..+++.|+++++|+|..+++++.+.+........+++|+++||++|||++++.+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~ 95 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA 95 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999888887777777899999999339999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccch
Q 007827 99 VASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGI 178 (588)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (588)
++.+++..++.++. .+...+++++.++|++.|...++..++++|++|+++++ +
T Consensus 96 ~~~~ig~~l~~~~~-----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~ 148 (500)
T PRK09584 96 IVLAIGYALVAWSG-----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----L 148 (500)
T ss_pred HHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----h
Confidence 99998888777652 13455778899999999999999999999999753322 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeecc--CCCCChhhhH--H----HH
Q 007827 179 TSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV--KPEGSPLAST--V----QV 250 (588)
Q Consensus 179 ~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----~~ 250 (588)
..+++++|.+.++|.+++|.+++++.+++||++.|++.++..+++++.+.+.++..++. ++++++.+.. . ..
T Consensus 149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PRK09584 149 DGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGV 228 (500)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHH
Confidence 24688899999999999999999999999999999998876666665544443332222 1221111110 0 00
Q ss_pred HHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCcccc-chhhHHHHHHHHh
Q 007827 251 FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRL-SSMQKVEEVKVLI 329 (588)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 329 (588)
.............. . ..+. .......... ...++. ...++ .++++..
T Consensus 229 ~~~~~~~~~~~~~~-~------------------~~~~--~~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~ 276 (500)
T PRK09584 229 VALIAIATWLLHNQ-E------------------IARM--ALGVVALGIV----------VIFGKEAFAMKG-AARRKMI 276 (500)
T ss_pred HHHHHHHHHHHhcc-h------------------HHHH--HHHHHHHHHH----------HHHHHHHhhcCH-HHHHHHH
Confidence 00111111000000 0 0000 0000000000 000000 01112 2344455
Q ss_pred hhhhHHHHHHHHHHHHhcccceeeeeccc-cccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCC
Q 007827 330 RVIPIWASAIVYYVALVQQQTYVVFQALQ-SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGI 408 (588)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~ 408 (588)
..+.+++..+++|..+.|.+..+..+... .+++.. ++.+++++++++|++.+++++|+.++. .+|+++| .
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~--g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~ 347 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL--GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---L 347 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---C
Confidence 55667788889999999999977665532 344443 567889999999999999999998775 6777666 4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC
Q 007827 409 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP 488 (588)
Q Consensus 409 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P 488 (588)
...+++.+|+++.++++..+.....+. ++....+.+|.++.+++.++||++.+|...+++.+.+|
T Consensus 348 ~~~~~~~~G~~l~~l~f~~l~~~~~~~---------------~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP 412 (500)
T PRK09584 348 PMPHKFAIGMVLCSGAFLVLPLGAKFA---------------NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVP 412 (500)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCc
Confidence 577899999999999998877653210 11134677899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 489 ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 489 ~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
+++||+++|++.++..+|+.+++.+......... ..+.. ...+++.+.|...++++++..++++...++.++.
T Consensus 413 ~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~--~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 413 QRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN--VTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888888887754321000 00000 0112467888888888887777777777666544
No 7
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.94 E-value=1.9e-23 Score=222.54 Aligned_cols=375 Identities=15% Similarity=0.073 Sum_probs=239.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
+|....+.+..+...++.....+.++.|+++++|+|..+.+++.+.+.++..+++++.|+++|| +||||+++.+.++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence 4555666677777788877888899999999999999999999999999999999999999999 699999999998887
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++...+.++....+ ....+...+++.|+++|++.+...+...+++.|.+++++ ++.+.
T Consensus 93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 150 (399)
T PRK05122 93 LSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVI 150 (399)
T ss_pred HHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccch
Confidence 77666555421000 000246678999999999999999988888889886422 23457
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCC
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (588)
++.....++|.++++.+++++.+.+||++.+++..+..++..+ +..+ .++.++++++...
T Consensus 151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~---------------- 210 (399)
T PRK05122 151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL---LARP-RPAVPPVKGERLP---------------- 210 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---HHhc-CCCCCCCCccchh----------------
Confidence 7777788899999999999999999999988765554332222 1111 1111110000000
Q ss_pred CCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhh-hHHHHHHHH
Q 007827 263 PEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVI-PIWASAIVY 341 (588)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 341 (588)
++ +..+...... ...+....+
T Consensus 211 ---------------------------------------------------~~-------~~~~~~~~~~~~~~~~~~~~ 232 (399)
T PRK05122 211 ---------------------------------------------------FR-------RVLGRVWPYGMGLALASIGF 232 (399)
T ss_pred ---------------------------------------------------HH-------HHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000000 001111111
Q ss_pred HHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHH
Q 007827 342 YVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA 421 (588)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~ 421 (588)
.......+.+...+ ... ..........++.++..++..+ +.||.++| +.+..+.++.
T Consensus 233 ~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~g~----l~~r~~~~-------~~~~~~~~~~ 289 (399)
T PRK05122 233 GTIATFITLYYAAR------GWD------GAALALTLFGVAFVGARLLFGN----LINRLGGL-------RVAIVSLLVE 289 (399)
T ss_pred HHHHHHHHHHHHHc------ccc------cchHHHHHHHHHHHHHHHHHHH----HHHHhccH-------HHHHHHHHHH
Confidence 11111111111100 000 0111112223333333343333 36665543 4555666666
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHH
Q 007827 422 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFV 501 (588)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~ 501 (588)
.+++...... .+.+..+...++.+++.+...+.......+.+|++.||+++|+++.
T Consensus 290 ~~~~~~~~~~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 345 (399)
T PRK05122 290 ILGLLLLWLA------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSV 345 (399)
T ss_pred HHHHHHHHHh------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6665554432 2334455567788888888888777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
...+|..+++.+.+.+.+.. ++++.|++.+++.+++.+..++..
T Consensus 346 ~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 346 FLDLSLGITGPLAGLVASWF----------------GYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887643 456778887777777766655543
No 8
>PRK03545 putative arabinose transporter; Provisional
Probab=99.93 E-value=2.7e-23 Score=220.85 Aligned_cols=372 Identities=13% Similarity=0.064 Sum_probs=234.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|...+.+.+..+......+...+.+| .+.+++|+|..+.+++.+.+.++..+++++.|+++|| +||||++..+.++.+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHH
Confidence 43344444444444333343333444 4577999999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+.+.++ .+++.++++|+++|++.+...+...+++.|++|+++ ++...
T Consensus 86 ~~~~~~~~~------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 135 (390)
T PRK03545 86 ASHVLSALA------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQAL 135 (390)
T ss_pred HHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHH
Confidence 888888776 467889999999999999888888999999987422 23568
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCC
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (588)
+++..+.++|.+++|.+++.+.+.+|||+.|++.++..++..+......|+.+++ ++++. +......
T Consensus 136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~----~~~~~~~------- 202 (390)
T PRK03545 136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSL----KSLPLLF------- 202 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchH----HHHHHHH-------
Confidence 8888899999999999999999889999999998776655544433322221110 00000 0000000
Q ss_pred CCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhh-hhhHHHHHHHH
Q 007827 263 PEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVY 341 (588)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 341 (588)
..+.... .....+.....
T Consensus 203 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 221 (390)
T PRK03545 203 -------------------------------------------------------------RRPALVSLYLLTVVVVTAH 221 (390)
T ss_pred -------------------------------------------------------------hCcHHHHHHHHHHHHHHHH
Confidence 0011111 11111111111
Q ss_pred HHHHhcccceeeeeccccccccCCcccc-ccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHH
Q 007827 342 YVALVQQQTYVVFQALQSDRRVGNTHFK-IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420 (588)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l 420 (588)
+..+...+.+.. ...| .+ ...........++.+++..+.++ +.||.++| .+..+..+
T Consensus 222 ~~~~~~~~~~l~-------~~~g---~s~~~~~~~~~~~~~~~~~g~~~~g~----l~dr~~~~--------~~~~~~~~ 279 (390)
T PRK03545 222 FTAYSYIEPFVQ-------QVAG---LSENFATLLLLLFGGAGIIGSVLFSR----LGNRHPSG--------FLLIAIAL 279 (390)
T ss_pred HHHHHHHHHHHH-------HhcC---CCccHHHHHHHHHHHHHHHHHHHHHH----Hhhccchh--------HHHHHHHH
Confidence 222211111111 1111 00 01112222333344444444333 35554432 23344444
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH
Q 007827 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF 500 (588)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~ 500 (588)
...+....... ..+.+.++...++.+++.....+.....+.+..|+ .|++++|+++
T Consensus 280 ~~~~~~~l~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~ 335 (390)
T PRK03545 280 LLVCLLLLLPA-----------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFS 335 (390)
T ss_pred HHHHHHHHHHH-----------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44443333221 12344555567777888777777777788888775 7899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 501 ~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
....+|..+|+.+.|.+.+.. +++..|++.+++.+++.+..+...+
T Consensus 336 ~~~~~g~~~G~~~~G~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 336 GIFNIGIGAGALLGNQVSLHL----------------GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998754 4567888888888888777766653
No 9
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.93 E-value=9.4e-24 Score=234.86 Aligned_cols=337 Identities=27% Similarity=0.514 Sum_probs=266.8
Q ss_pred HHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccC
Q 007827 38 LGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKL 117 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 117 (588)
++||++...+..|+++.+|++..++..+...+.....+..+++|+++|+++||+|++.++.++..+|..++++... |..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999988877532 110
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHH
Q 007827 118 HPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL 197 (588)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 197 (588)
. ...+....+++..+..+|.|++.|+..+..+|+++++ .++.+.++|+++|.+.|+|+.+++
T Consensus 80 ~---------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~---~~~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 80 G---------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER---QLSLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred c---------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0123455778899999999999999999999999742 233456899999999999999999
Q ss_pred HHHHHhccc-------cchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCcccc
Q 007827 198 TVIVYVQSD-------VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTL 270 (588)
Q Consensus 198 ~i~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (588)
.+.+++.++ .+|..+|.+++++++++++++...++.+++.++.+++..+..+.+....++++....+.
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~----- 216 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH----- 216 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence 999998744 36999999999999999888887777776666666666666666666555442211100
Q ss_pred ccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc
Q 007827 271 HNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT 350 (588)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (588)
...++++.+.... ..+.++++|++++++++++..+++|..+.|+.+
T Consensus 217 ----------------~~~~~ld~a~~~~------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s 262 (654)
T TIGR00926 217 ----------------WPLHWLDYAKDKH------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGS 262 (654)
T ss_pred ----------------cchhHHHHhcccc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 0012232221110 123567789999999999999999999999999
Q ss_pred eeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 007827 351 YVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGI 430 (588)
Q Consensus 351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~ 430 (588)
.+..|....+.+++ ++.+++.+++.+|++.++++.|+.++.++|..+|.+. +.++..++.+|++++++++.+.+.
T Consensus 263 ~~~~qa~~m~~~l~--g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ 337 (654)
T TIGR00926 263 RWTLQATRMDGDVG--GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAAL 337 (654)
T ss_pred HHHHHHHHhcCccC--CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776665 6778999999999999999999999887777766543 378899999999999999999988
Q ss_pred HHHHHhh
Q 007827 431 IEDKRRS 437 (588)
Q Consensus 431 ~~~~~~~ 437 (588)
.+...++
T Consensus 338 ve~~~~~ 344 (654)
T TIGR00926 338 VQLKVNP 344 (654)
T ss_pred HHHHHhc
Confidence 8766654
No 10
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.93 E-value=3.9e-23 Score=220.58 Aligned_cols=174 Identities=17% Similarity=0.154 Sum_probs=139.8
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
++|..........+.+.+..+......|. +.+++|+|+.+.+++.+.+.++..+++++.|+++|| +||||++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Confidence 44555555556666666666665555554 457899999999999999999999999999999999 6999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.+++.+. .+++.+++.|++.|++.+...+...+++.|.+++ +.++.
T Consensus 90 ~~~~~~~~~~~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~ 139 (406)
T PRK11551 90 FGLFSLATAQA------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGP------RLRGT 139 (406)
T ss_pred HHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH------HHHHH
Confidence 87777666665 3567888999999999999999899999999863 22346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
.+++.+...++|..+++.+++.+.+..+|++.|++.++..++..++
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 6888888999999999999988888899999998876654444433
No 11
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.92 E-value=6.3e-23 Score=220.02 Aligned_cols=390 Identities=13% Similarity=0.031 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 007827 28 FVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLV 107 (588)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~ 107 (588)
.++...+...++.......+|.+. ++++.++.+.|++.+.+.++..+++++.|+++|| +|||+.+..+.++.+++...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHH
Confidence 344445555565555556666665 5678899999999999999999999999999999 69999999888777776655
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH
Q 007827 108 LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF 187 (588)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (588)
+....... ..+++.+++.|++.|++.+...++..+++.|.+++ +.++...++.+.
T Consensus 99 ~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 153 (417)
T PRK10489 99 LALNAFLP-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR------ENLMQAGAITML 153 (417)
T ss_pred HHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH------HHHHHHHHHHHH
Confidence 44321100 03467788899999999888888888888888863 123356777788
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccC-CCCChhhhHHHHHHHHHHhhccCCCCCC
Q 007827 188 TFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVK-PEGSPLASTVQVFVAAIKKRHLKLPEEP 266 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (588)
..++|..+||.+++.+.+..+|++.|++.++..++..++.+.. |+.++++ +++++..+..+.
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~---------------- 216 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRSLLAG---------------- 216 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHHHHHH----------------
Confidence 8999999999999999888899999988776665554443322 2111100 000000000000
Q ss_pred ccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 007827 267 WLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALV 346 (588)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (588)
++ .....+.+.......+..........
T Consensus 217 -----------------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (417)
T PRK10489 217 -----------------------------------------------FR-----FLLASPVVGGIALLGGLLTMASAVRV 244 (417)
T ss_pred -----------------------------------------------HH-----HHHcChHHHHHHHHHHHHHHHHhHHH
Confidence 00 00000111111100011000111111
Q ss_pred cccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHH
Q 007827 347 QQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMI 426 (588)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~ 426 (588)
.. +.+.....|. + ....+.+.....++.+++..+.+++ .||.+ +.+.+..+.++.+++++
T Consensus 245 ~~-------p~~~~~~~g~-~-~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~~-------~~~~l~~~~~~~~~~~~ 304 (417)
T PRK10489 245 LY-------PALADEVWQM-G-AAQIGLLYAAVPLGAALGALTSGWL----AHSAR-------PGLLMLLSTLGSFLAVG 304 (417)
T ss_pred hh-------HHHHHhccCC-C-hhHhHHHHHHHHHHHHHHHHHHHHh----hhccC-------cchHHHHHHHHHHHHHH
Confidence 11 1111221220 0 0011222333344444444443332 34321 12345555555555555
Q ss_pred HHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHH
Q 007827 427 ISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAIS 506 (588)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig 506 (588)
..... .+.+......++.+++.+...+...+++.+.+|++.||+++|+++....+|
T Consensus 305 ~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 360 (417)
T PRK10489 305 LFGLM------------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTG 360 (417)
T ss_pred HHHcc------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhh
Confidence 44431 234445556677778777777777889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCC
Q 007827 507 NYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGA 573 (588)
Q Consensus 507 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 573 (588)
..+++.+.|.+.+.. ++...++..+++.++..++.+...+++|+++.||.+
T Consensus 361 ~~~g~~l~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 361 DAIGAALLGGLGAMM----------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HhHHHHHHHHHHHHh----------------chhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999999998754 334566677777777667777777888877776654
No 12
>PRK12382 putative transporter; Provisional
Probab=99.92 E-value=1.4e-22 Score=215.31 Aligned_cols=375 Identities=12% Similarity=0.054 Sum_probs=234.8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
.+.++.+.+..++...+.....+.+|.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||.++.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHH
Confidence 3455555566666677777777888999999999999999999999999999999999999999 699999998887776
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+...+....+. ....++..++++|+++|++.+...+...+++.|.+++++ ++.++
T Consensus 93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~ 150 (392)
T PRK12382 93 LAGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVM 150 (392)
T ss_pred HHHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhh
Confidence 65443322211010 001367788999999999999888888888889886422 23557
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCC
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (588)
++...+.++|..++|.+++++.+.+||++.+.+..+..++.+ .+. ++.++.+++++...+.
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~--------------- 211 (392)
T PRK12382 151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHAGERPSL--------------- 211 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCcccCchH---------------
Confidence 778888899999999999999888999987665544332222 111 1111111100000000
Q ss_pred CCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHH
Q 007827 263 PEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 342 (588)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (588)
+ ..+ +... ...+ . .......+.
T Consensus 212 ---------------------------~---------------------~~~-----~~~~-~~~~-~---~~l~~~~~~ 233 (392)
T PRK12382 212 ---------------------------W---------------------SVV-----GLIW-KPGL-G---LALQGVGFA 233 (392)
T ss_pred ---------------------------H---------------------HHH-----HHHH-HhHH-H---HHHHHHHHh
Confidence 0 000 0000 0000 0 001111111
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
......+.+.. +.... ..........++.++..++..+ +.||.++| +.+..+..+..
T Consensus 234 ~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~~~~~~~ 290 (392)
T PRK12382 234 VIGTFVSLYFA------SKGWA------MAGFTLTAFGGAFVLMRVLFGW----MPDRFGGV-------KVAIVSLLVET 290 (392)
T ss_pred HHHHHHHHHHH------hcCCc------hhHHHHHHHHHHHHHHHHHHHH----HHHhcCCC-------eehHHHHHHHH
Confidence 11111111110 00010 0111112223333344444333 47776655 33445555665
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVG 502 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~ 502 (588)
++++..... .+.+......++.+++.+...+.......+.+|++.||++.|++++.
T Consensus 291 ~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (392)
T PRK12382 291 VGLLLLWLA------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAF 346 (392)
T ss_pred HHHHHHHHc------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 665544432 23344455667778888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 007827 503 FAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLC 560 (588)
Q Consensus 503 ~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~ 560 (588)
..+|..+++.+.+.+.+.. ++.+.|.+.+++.+++.+..+..
T Consensus 347 ~~~g~~ig~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 347 QDIAYGVSGPLAGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988754 35678888888777776665544
No 13
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.4e-22 Score=207.53 Aligned_cols=379 Identities=14% Similarity=0.097 Sum_probs=256.9
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
++.|..++.+.+..|.-...=+.....+|.. .+++|.|..++|++++.|..+..+++|+...++|| +.||+.++..+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence 3445666666666666666666666677655 67999999999999999999999999999999999 699999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.++.++++++ .+++.++++|++.|+..|.+++...++.+++.|++++ +
T Consensus 87 lFi~~n~l~alA------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~------~ 136 (394)
T COG2814 87 LFIVSNLLSALA------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKR------G 136 (394)
T ss_pred HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch------h
Confidence 999999999998 4688999999999999999999999999999985322 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc-eeeccCCCCChhhhHHHHHHHHHHhh
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR-LYAKVKPEGSPLASTVQVFVAAIKKR 258 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (588)
++.++...+..++.++|..++.++.+.+|||..|++..++.++.++..+...| +...+ ..+.+..+..+ ..
T Consensus 137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~-~~~~~~~~~~~----~l--- 208 (394)
T COG2814 137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISG-SLPGPLRTLLR----LL--- 208 (394)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-CCCcchhHHHH----Hh---
Confidence 56888888999999999999999999999999999988888887777666555 11110 01011110100 00
Q ss_pred ccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhh-hhhHHHH
Q 007827 259 HLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWAS 337 (588)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 337 (588)
+++++.. +....+.
T Consensus 209 -----------------------------------------------------------------~~p~v~~~l~~t~l~ 223 (394)
T COG2814 209 -----------------------------------------------------------------RRPGVLLGLLATFLF 223 (394)
T ss_pred -----------------------------------------------------------------cCchHHHHHHHHHHH
Confidence 0111111 1111222
Q ss_pred HHHHHHHHhcccceeeeeccccccccCCccccc-cchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHH
Q 007827 338 AIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI-PAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~ 416 (588)
....+..|.+...++... .| +.. ...+......++.+++..+.+|+ .|| +.| +.+..
T Consensus 224 ~~g~F~~ftYi~P~L~~v-------~g---~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl----~dr-~~~-------~~l~~ 281 (394)
T COG2814 224 MTGHFALYTYIRPFLESV-------AG---FSVSAVSLVLLAFGIAGFIGNLLGGRL----ADR-GPR-------RALIA 281 (394)
T ss_pred HcchhhhHHhHHHHHHHc-------cC---CCHhHHHHHHHHHHHHHHHHHHHHhhh----ccc-cch-------hHHHH
Confidence 222333333222222211 11 111 12334444555556666665554 666 322 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHH
Q 007827 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496 (588)
Q Consensus 417 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~ 496 (588)
...+..+.+..+.... .+.+..+...++.++.........+....+.. ++.++.++
T Consensus 282 ~~~l~a~~~l~l~~~~-----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~ 337 (394)
T COG2814 282 ALLLLALALLALTFTG-----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAG 337 (394)
T ss_pred HHHHHHHHHHHHHHhc-----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHH
Confidence 5566666665555431 23344444444455555555555555555533 45699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 497 SLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 497 ~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
+++....++|..+|..+++.+.+.. ++....++.+.+.+++.++.+...++.+
T Consensus 338 sl~~aa~nlgia~GA~lGG~v~~~~----------------g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 338 SLNVAAFNLGIALGAALGGLVLDAL----------------GYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998753 5667788888888888777776665443
No 14
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.92 E-value=1.9e-22 Score=227.12 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=124.5
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
...+.+++.+++|++..+.+++.+++.++..++++++|+++|| +|||+++++++++..++.++++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa------------ 252 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFV------------ 252 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 3445556677899999999999999999999999999999999 699999999998888888777766
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
.+++.++++|++.|++.|+..++..+++.|.+|. +.++..++++..+..+|.++++.++..+
T Consensus 253 ------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~------~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 ------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ------EKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999963 2234567777888889999888876554
Q ss_pred ccc-------------cchhhHHHHHHHHHHHHHHHHH
Q 007827 204 QSD-------------VSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 204 ~~~-------------~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
... .+||+.+++.++..++.+++.+
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 432 3689988887665555544433
No 15
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.92 E-value=1.1e-22 Score=221.92 Aligned_cols=409 Identities=13% Similarity=0.082 Sum_probs=224.2
Q ss_pred CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCc
Q 007827 56 NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 135 (588)
Q Consensus 56 g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (588)
+++..+.+++.+.+.++..+++++.|+++|| +||||+++++.+++.++.+.+++....- . ....++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~-~-----------~~~~~~~ 117 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGF-T-----------SIGPDNT 117 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhcccc-c-----------cccccch
Confidence 8999999999999999999999999999999 6999999999999888877666531000 0 0000112
Q ss_pred hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhc--------ccc
Q 007827 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDV 207 (588)
Q Consensus 136 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~ 207 (588)
.....++++|+++|++.|...+...++++|.+|+++ |+...+....+..+|.++++.++..+. +.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 345678899999999999999999999999997421 235677777788889888877765443 457
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCC
Q 007827 208 SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG 287 (588)
Q Consensus 208 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (588)
|||+.|++.++..++..+..++ .|+.++....+.+.++..+.. ++ ........ .
T Consensus 192 gWr~~f~~~~~~~~~~~~~~~~-l~~s~~~l~~~~~~~~~~~~~----~~--~~~~~~~~-------------------~ 245 (479)
T PRK10077 192 GWRYMFASEAIPALLFLMLLYF-VPETPRYLMSRGKQEQAEGIL----RK--IMGNTLAT-------------------Q 245 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHcCCHHHHHHHH----HH--HcCChhHH-------------------H
Confidence 8999999877666555443333 233221100001111100000 00 00000000 0
Q ss_pred ccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccce--eeeeccccccccCC
Q 007827 288 QFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTY--VVFQALQSDRRVGN 365 (588)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 365 (588)
..+.... .. . .+.+..+..................+.+...+ ...+........|
T Consensus 246 ~~~~~~~-~~--------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g- 302 (479)
T PRK10077 246 ALQEIKH-SL--------------------D-HGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG- 302 (479)
T ss_pred HHHHHHH-HH--------------------H-HhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcC-
Confidence 0000000 00 0 00000000000000000000001111111110 0000000001111
Q ss_pred cccccc-chhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 007827 366 THFKIP-AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPV 444 (588)
Q Consensus 366 ~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 444 (588)
.... .........+..++..++.. ++.||++|| +.+..+.++++++++.+.....
T Consensus 303 --~~~~~~~~~~~~~~~~~~i~~~~~g----~l~dr~g~r-------~~~i~~~~~~~v~~~~l~~~~~----------- 358 (479)
T PRK10077 303 --ASTDIALLQTIIVGVINLTFTVLAI----MTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFY----------- 358 (479)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHH----HHHHHhcCh-------HHHHHhHHHHHHHHHHHHHHHh-----------
Confidence 0000 11112222223333333333 347777765 5667777777777666554311
Q ss_pred cccccCCccccchHHHHHHHHHHHHHHHHh-HhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 007827 445 GLEQRRGAISSLSGLWLIPQLSLIGFSEAF-TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 523 (588)
Q Consensus 445 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~ 523 (588)
......+.+...++.+.+.+. ..+..+.++.|.+|++.|++++|+....+++++.+++.+.|.+.+.
T Consensus 359 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~--- 426 (479)
T PRK10077 359 ---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN--- 426 (479)
T ss_pred ---------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc---
Confidence 011222333334444444443 3466789999999999999999999999999999999888866521
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCch
Q 007827 524 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPE 575 (588)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (588)
+|+.++ .+..+.|++++++++++.++.+++.+|.|+++.||.++.
T Consensus 427 ----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 427 ----SWLVAH---FHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred ----cchhhh---ccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 111110 122356777787777777777777888887766654333
No 16
>PRK10054 putative transporter; Provisional
Probab=99.91 E-value=1.1e-22 Score=216.83 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=144.3
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
.+|..+.+....++...+++.+.++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +|||++++++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 34566777778888888888999999999999999999999999999999999999999999999 69999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
.++.++..++ .+++.+++++.+.+.+.+...++..++..|.+++ +.++..
T Consensus 84 ~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~ 133 (395)
T PRK10054 84 ASGFIAIPLV------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSS------TSKTKI 133 (395)
T ss_pred HHHHHHHHHH------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------hHHHHH
Confidence 7777776665 3456677788888888777788888888888753 223467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
+++.+...++|.+++|.+++++.+ .+|+.+|++.++..++.+++.
T Consensus 134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 889999999999999999998875 789999998777666654433
No 17
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.91 E-value=3.3e-22 Score=215.67 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
++..++..+..+.+...+|.+. +++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++..++.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHH
Confidence 3344444444445556666554 5799999999999999999999999999999999 6999999999999888888777
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
++ .+++.+++.|++.|++.|...+...+++.|++++ +.++...++++.+.
T Consensus 107 ~~------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~------~~rg~~~~~~~~~~ 156 (434)
T PRK11663 107 FS------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR------TERGGWWAIWNTAH 156 (434)
T ss_pred HH------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH------HHHHHHHHHHHHHH
Confidence 65 3567788899999999999889899999999863 22346788888999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
++|..++|.+.+++.+.+|||+.|++.++..++..
T Consensus 157 ~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 157 NVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999988999999988776554443
No 18
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.91 E-value=3.4e-22 Score=213.29 Aligned_cols=168 Identities=12% Similarity=0.140 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
..++...++..++++.+.++++.|+++++|+|..+.|.+.+...+...+..+++|+++|| +|||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 445567778888888999999999999999999999999999999999999999999999 6999999999999988887
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
.+... .+++.+++.|+++|++.+...|...+++.|.+|+ +.++.++++.+
T Consensus 92 ~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIA------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP------HQRGRFFSLLM 141 (400)
T ss_pred HHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHH
Confidence 77665 3567788999999999988888888999998863 22346789999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
...++|..+||.+++++. .+||++.|++.++..++..++
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 689999999877665554433
No 19
>PRK10504 putative transporter; Provisional
Probab=99.91 E-value=7.4e-22 Score=215.11 Aligned_cols=178 Identities=14% Similarity=0.056 Sum_probs=145.7
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+..+.+.+..++..+..+.+...+|.|.+ ++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence 34566666777777777788888888764 699999999999999999999999999999999 6999999998888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+.+.+.++ .+.+.++++|+++|++.+...+...+++.|.+|+ +.++..++
T Consensus 88 ~~~~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 137 (471)
T PRK10504 88 GSLFCALS------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR------EQYMAAMT 137 (471)
T ss_pred HHHHHHHh------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH------HHHHHHHH
Confidence 77776654 3567788999999999999999999999998863 22346788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+.+...++|..++|.+++++.+..|||+.|++......+..++.....++
T Consensus 138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999999999998776665555554444343
No 20
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.91 E-value=1.6e-21 Score=207.61 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=142.4
Q ss_pred cccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 18 LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
..++.|+.+..+....++.....|.....+|.+ .+++|+++++.++..+.+.++..+++++.|+++|| +|||++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHH
Confidence 444566655555555444544555555666665 57899999999999999999999999999999999 6999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 98 SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 98 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
.++.+++.+++.++ .+++.+++.|+++|++.+...+...+++.|.+|+ +.
T Consensus 92 ~~~~~~~~~~~~~~------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~------~~ 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP------RT 141 (394)
T ss_pred HHHHHHHHHHHHHH------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH------hH
Confidence 99999888777665 3678899999999999999999999999999863 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
++.+.+......++|..++|.+++++.+.+|||+.|++.+++.++..
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 34568888888999999999999999999999999998776554433
No 21
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.91 E-value=1.7e-21 Score=205.15 Aligned_cols=169 Identities=13% Similarity=0.071 Sum_probs=129.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHH-HHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGF-ASVASFLGMLVLSL 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~-~~~~~~i~~~~~~~ 110 (588)
..++..++.....+.++.|+++++|.|..+.|++.+.+.+...+.+++.|+++|| +||||.++. +.+...++.+++..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHh
Confidence 4566677777788899999999999999999999999999999999999999999 699987655 44444445555555
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
+ .+++.+++.|++++.+.+...|...++..|..++ +++.+....+..+...+
T Consensus 84 ~------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 84 N------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADR----TGREAVMFSSVMRAQIS 135 (375)
T ss_pred c------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh----cchhhHHHHHHHHHHHh
Confidence 4 3566777888888888777788777777776642 22222223566677788
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 191 FAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|.+++|.+++++.+.+|||+.|++.++..++..++.++
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999987766555554444
No 22
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.90 E-value=1.9e-21 Score=207.05 Aligned_cols=361 Identities=11% Similarity=-0.012 Sum_probs=223.3
Q ss_pred hhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 41 TGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 41 ~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
+...+.+| .+++++|+|..+.+++.+.+.+++.+++++.|+++|| +|||+++..+..+++++.++++++
T Consensus 26 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a--------- 94 (393)
T PRK09705 26 TSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELY--------- 94 (393)
T ss_pred hccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHC---------
Confidence 44445555 4567999999999999999999999999999999999 699999999999999999999887
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
++++.++++|+++|++.+...+....++.+.+++ + ++.+.+.+..+.++|..+++.++
T Consensus 95 ---------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~---~----~~~~~g~~~~~~~~g~~~g~~~~ 152 (393)
T PRK09705 95 ---------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ---R----TPLVMGLWSAALMGGGGLGAAIT 152 (393)
T ss_pred ---------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc---c----chhHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999888988888741 1 23567788888889999999999
Q ss_pred HHhcccc-chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccc
Q 007827 201 VYVQSDV-SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI 279 (588)
Q Consensus 201 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (588)
+++.++. +||+.+...++..++.+...+...++ ++++++.+ +
T Consensus 153 ~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------~--------------------- 195 (393)
T PRK09705 153 PWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSHKT------------T--------------------- 195 (393)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCccccCC------------C---------------------
Confidence 9888775 89988766544433333322222111 11100000 0
Q ss_pred cCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeecccc
Q 007827 280 NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQS 359 (588)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (588)
. +. ...+ . +.+.....+...+....++....+.+.+...+ ..
T Consensus 196 -~-----~~----------------------~~~l---~-----~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--g~ 237 (393)
T PRK09705 196 -T-----TP----------------------VRVV---F-----TPRAWTLGVYFGLINGGYASLIAWLPAFYIEI--GA 237 (393)
T ss_pred -c-----CC----------------------cccc---c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 0 00 0000 0 01111011111112222223333333322111 11
Q ss_pred ccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 360 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 439 (588)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 439 (588)
+. ...........++.+++..+.++ +.||.++| +....++.+..++........
T Consensus 238 s~--------~~ag~~~~~~~i~~i~g~~~~g~----l~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~------- 291 (393)
T PRK09705 238 SA--------QYSGSLLALMTLGQAAGALLMPA----MARHQDRR-------KLLMLALVLQLVGFCGFIWLP------- 291 (393)
T ss_pred Ch--------hhhhHHHHHHHHHHHHHHHHHHH----HHhhccch-------HHHHHHHHHHHHHHHHHHHcc-------
Confidence 10 01112233334444444444333 36665544 445556666555554443321
Q ss_pred ccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 440 LSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
.+.... ..++.+++.+...+.......+..| ++.+++.+++.+....++..+++.+.+.+.
T Consensus 292 ----------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 292 ----------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred ----------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1234566666666766666667774 688999999999999999999999999998
Q ss_pred hhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 007827 519 RFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 568 (588)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~ 568 (588)
|..+ ++...|.+.++..++..+..+.+.+|++.+.
T Consensus 354 ~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 354 SISG---------------NYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHhC---------------CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 8652 3445666767777777666677776665443
No 23
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.90 E-value=1.4e-21 Score=214.86 Aligned_cols=178 Identities=14% Similarity=0.110 Sum_probs=126.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHh-----cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI-----FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
++.+..+.+..+...+....+....+.+ ..+ .+.+..+.+++.+.+.++..++++++|+++|| +|||+++.++
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~ 92 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKML-GYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHH
Confidence 3333334444444444443434434433 332 24556677899999999999999999999999 6999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 98 SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 98 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
+++..++.+++.++... ....+...++++|+++|++.|...+....+++|.+|+ +.
T Consensus 93 ~~~~~v~~~~~~~~~~~------------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~------~~ 148 (502)
T TIGR00887 93 LIIMIIATVASGLSPGS------------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK------KW 148 (502)
T ss_pred HHHHHHHHHHHHHccCc------------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh------hh
Confidence 99988888777665210 0002367899999999999999999999999999974 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcc-----------------------ccchhhHHHHHHHHHHHHHHH
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQS-----------------------DVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~-----------------------~~g~~~~~~~~~~~~~~~~~~ 226 (588)
|+.+.++.+....+|..+++.++..+.. .++||+.|.+.++..++..+.
T Consensus 149 Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 149 RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 3456788888888998888887764421 247999998776655544433
No 24
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.90 E-value=7.3e-22 Score=206.35 Aligned_cols=353 Identities=11% Similarity=0.035 Sum_probs=224.2
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
....+...++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++|| +||||+++.+.++..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHH
Confidence 34555555665556667777765 689999999999999999999999999999999 6999999999888777776666
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
+....++ .+.+.++++|++.|++.+...+...+++.|.++++ .++..+++.+...
T Consensus 83 ~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 137 (365)
T TIGR00900 83 FVALLGG-------------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVR 137 (365)
T ss_pred HHHHcCC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHH
Confidence 6532110 26788899999999999999999999999998642 2346789999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhh-hHHHHHHHHHHhhccCCCCCCcc
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLA-STVQVFVAAIKKRHLKLPEEPWL 268 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (588)
++|..++|.+++++.+..||++.|++.++..+++.++.+..+.+..++ +++++.+ +..+...
T Consensus 138 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------- 200 (365)
T TIGR00900 138 SLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNAVLRDTR---------------- 200 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchhHHHHHH----------------
Confidence 999999999999999889999999887766555544433322111110 0000000 0000000
Q ss_pred ccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh-HHHHHHHHHHHH-h
Q 007827 269 TLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP-IWASAIVYYVAL-V 346 (588)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 346 (588)
..++ ...+.+.+..... .......+.... .
T Consensus 201 -------------------------------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (365)
T TIGR00900 201 -------------------------------------------EGIK-----FVLKNPLLRTLLLLALLFNLVFAPAIVA 232 (365)
T ss_pred -------------------------------------------hHHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000011111111 111111111111 1
Q ss_pred cccceeeeeccccccccCCccccccc---hhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHH
Q 007827 347 QQQTYVVFQALQSDRRVGNTHFKIPA---ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF 423 (588)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~ 423 (588)
..+.+. ....+ .+. ........++.++...+..+ +.||.++| +.+..+..+.++
T Consensus 233 ~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-------~~~~~~~~~~~~ 289 (365)
T TIGR00900 233 LFPYVQ-------SKYLG-----RGSTHYGWVLAAFGLGALLGALLLGL----LGRYFKRM-------ALMTGAIFVIGL 289 (365)
T ss_pred HhHHHH-------HHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhchh-------HHHHHHHHHHHH
Confidence 111111 11111 111 22223333344444444333 35554433 445555555555
Q ss_pred HHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHH
Q 007827 424 TMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~ 503 (588)
+++..... .+ +.+..+...++.+++.+...+...+++.|.+|++.|+++.|+.++..
T Consensus 290 ~~~~~~~~----------------------~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 346 (365)
T TIGR00900 290 AILVVGLT----------------------PP-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLS 346 (365)
T ss_pred HHHHHHhh----------------------ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55555442 11 24556667788899999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007827 504 AISNYLNGFLISMVHRF 520 (588)
Q Consensus 504 ~ig~~l~~~~~~~l~~~ 520 (588)
.++..+++.+.+.+.+.
T Consensus 347 ~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 347 HAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988763
No 25
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.90 E-value=2.2e-21 Score=207.22 Aligned_cols=157 Identities=17% Similarity=0.056 Sum_probs=125.6
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
...+.+.++. +.+++|+|..+.++..+.+.++..++.++.|+++|| +||||.++.+.++..++.+.+..+
T Consensus 29 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~-------- 98 (406)
T PRK15402 29 NDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLA-------- 98 (406)
T ss_pred hhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 3334444554 457899999999999999999999999999999999 699999999988888877776665
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+.+.+++.|++.|++.+...+...+++.|.++++ + +....++.+....+|..++|.+
T Consensus 99 ----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~----~--~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 99 ----------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA----D--AIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred ----------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh----H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999988888889999998642 1 1234666666777889999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++++.+..+|++.|++.++..++..+...
T Consensus 157 ~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 157 GAALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 99998888999999887776655554433
No 26
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.90 E-value=5.1e-22 Score=216.31 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=120.7
Q ss_pred HHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 007827 48 LVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDS 127 (588)
Q Consensus 48 ~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 127 (588)
...+.+++|+|..+.|++.+.+.+++.++++++|+++|| +||||++..+.++.+++.+..+.....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~------------- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGS------------- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 445678999999999999999999999999999999999 699999988888777766655542100
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc
Q 007827 128 GACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV 207 (588)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~ 207 (588)
...+.+.+++.|++.|++.+...|+..++++|.+|++++ +.+.+++..+.++|.++++.+..++.+.+
T Consensus 118 ------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r------g~a~gi~~~~~~lG~~l~~~i~~~~~~~~ 185 (467)
T PRK09556 118 ------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKR------GRFLGFWNISHNLGGAGAGGVALWGANYF 185 (467)
T ss_pred ------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccce------eeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence 013678899999999999999999999999999975322 24577777788899999988887665542
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHh
Q 007827 208 ---SWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 208 ---g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|+..|.+.++..++..++.++
T Consensus 186 ~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 186 FDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHH
Confidence 5888887766655444333333
No 27
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.90 E-value=1e-21 Score=209.51 Aligned_cols=378 Identities=12% Similarity=0.032 Sum_probs=231.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchh-----hhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSIT-----ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~-----~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
...+.+..++...++....+.+|.|.+ ++|++..+ .+++.+.+.+...++.++.|+++|| +|||+.++.+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 93 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHH
Confidence 344445666777777777888888875 68888665 3788899999999999999999999 6999999998888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++..++... .+++.+++.|++.|++.+ ..+...+++.|.++++ + ++.
T Consensus 94 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~--~~~ 142 (408)
T PRK09874 94 MGIVMVLMGLA------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRN----K--SGW 142 (408)
T ss_pred HHHHHHHHHHH------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh----h--hhH
Confidence 88777766654 357788899999999865 4566777888887532 1 235
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhcc
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHL 260 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
..+......++|..++|.+++.+.+.++|++.|++.++..++..+......++..+..+++++ .+..+. .+ .
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~--~- 214 (408)
T PRK09874 143 ALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHMREV----VT--S- 214 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHHHHH----HH--h-
Confidence 677888888999999999999998889999999987776655554443332321110000000 000000 00 0
Q ss_pred CCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHH
Q 007827 261 KLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIV 340 (588)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (588)
. ++.+....... ....
T Consensus 215 --------------------------------------------------------~-----~~~~~~~~~~~---~~~~ 230 (408)
T PRK09874 215 --------------------------------------------------------L-----KNPKLVLSLFV---TTLI 230 (408)
T ss_pred --------------------------------------------------------C-----cCCchHHHHHH---HHHH
Confidence 0 00000000000 0000
Q ss_pred HHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHH
Q 007827 341 YYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420 (588)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l 420 (588)
..............+......... ........+.....++.++..+...+ +.||+++| +.+..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~l~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~~ 297 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELAGNVS--NIAFISGMIASVPGVAALLSAPRLGK----LGDRIGPE-------KILITALIF 297 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccccc-------hhHHHHHHH
Confidence 111111111111101000000000 00000111112223333344444333 46776655 344455544
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH
Q 007827 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF 500 (588)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~ 500 (588)
..++++..... .+.+......++.+++.+...+...+++.+..|++.||+.+++.+
T Consensus 298 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (408)
T PRK09874 298 SVLLLIPMSFV------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ 353 (408)
T ss_pred HHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence 44444433322 233444556677888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 501 ~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
....+|..+++.+.+.+.+.. ++++.|++.+++.+++.+..+...
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887543 456788888888887766655443
No 28
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.90 E-value=1.3e-21 Score=214.69 Aligned_cols=403 Identities=14% Similarity=0.069 Sum_probs=238.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|..+..+.+..++..+....+...+|.+ .+++|.+..+.+|+.+.+.++..++.++.|+++|| +|||++++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3444455556666666666666666665 57899999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++.++ .+.+.++++|+++|+|.+...+.....+.+.+++ . +.++.++
T Consensus 83 ~~~~~~~~a------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~---~--~~r~~~~ 133 (495)
T PRK14995 83 LASLAAAFS------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTE---E--KQRNMAL 133 (495)
T ss_pred HHHHHHHHc------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---H--HHHHHHH
Confidence 999988876 4678899999999999999888777777777642 1 2345678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhh-HHH---H--HHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAS-TVQ---V--FVAAIK 256 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~~~ 256 (588)
+++....++|..+||.+++++.+++||||.|++...+.++.+++..+..|+.++++.++.+... ... . +....+
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~ 213 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAK 213 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776666555544444432221111111111 000 0 000011
Q ss_pred hhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHH
Q 007827 257 KRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWA 336 (588)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (588)
... +...+++. ..................+.+...+..+++.+++ +......+..+.
T Consensus 214 ~~~-~~~~~~~~-----------------~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~-----~~~~~~~~~~~~ 270 (495)
T PRK14995 214 TAL-KGFLSLWV-----------------TSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH-----RIILSGVVMAMT 270 (495)
T ss_pred hcc-ccCCchHH-----------------HHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC-----cccHHHHHHHHH
Confidence 000 00000000 0000000000000000000011112223322221 111111111111
Q ss_pred HHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHH
Q 007827 337 SAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~ 416 (588)
....++...... +.+.+...|. -....+.......++..+..++..+ +.||.++| +.+..
T Consensus 271 ~~~~~~~~~~~~-------~~~lq~v~g~--s~~~ag~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~ 330 (495)
T PRK14995 271 AMITLVGFELLM-------AQELQFVHGL--SPLEAGMFMLPVMVASGFSGPIAGI----LVSRLGLR-------LVATG 330 (495)
T ss_pred HHHHHHHHHHHH-------HHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCch-------HHHHH
Confidence 111111111111 1111111120 0001112222233444445555433 47776654 45566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHH
Q 007827 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496 (588)
Q Consensus 417 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~ 496 (588)
|+++.+++++.+.... ...+.+......++.|++.+...++....+.+.+|++.++.++
T Consensus 331 g~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~ 389 (495)
T PRK14995 331 GMALSALSFYGLAMTD---------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAG 389 (495)
T ss_pred HHHHHHHHHHHHHHhc---------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHH
Confidence 7777766665554321 1123344455678889999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 497 SLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 497 ~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
++.++...+|+.+|+.+.+.+.+.
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.90 E-value=1.4e-21 Score=205.88 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=131.4
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN 124 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (588)
+...+++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++..++.++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 344455788999999999999999999999999999999999 699999999998888888877776
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 007827 125 QDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ 204 (588)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~ 204 (588)
.+++.++++|++.|++.+...+...+++.|.+|+ +.++..+++.....++|..++|.+++++.
T Consensus 80 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 80 -----------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPA------SERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -----------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH------HHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999863 22346788888999999999999999998
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 205 SDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+..+|++.|++.++..++..++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhhe
Confidence 88999999998777665555444433
No 30
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.90 E-value=1.5e-21 Score=209.13 Aligned_cols=181 Identities=11% Similarity=0.044 Sum_probs=143.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
.+|+....+.+..+++........... ..+++++|+|..+.+++.+++.++..+++++.|+++|| +|||+++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHH
Confidence 345555555555555555555544444 47889999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.++++++ .++..+++.|++.|++.+...|....++.|.+|+ +.++.
T Consensus 83 ~~~~~~~~~~~------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~rg~ 132 (412)
T TIGR02332 83 WGIASTATMFA------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA------YFRAR 132 (412)
T ss_pred HHHHHHHHHHh------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH------HHHHH
Confidence 99988888776 3567889999999999999999888899999963 22346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc------ccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQS------DVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
..++++....+|.++++.+++++.+ ..|||+.|++.++..++..++.++..|+
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 6888888999999999999988763 3699999998777665544444443343
No 31
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.90 E-value=2.1e-21 Score=210.14 Aligned_cols=142 Identities=21% Similarity=0.301 Sum_probs=116.6
Q ss_pred chhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhH
Q 007827 59 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 138 (588)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (588)
..+.+++.+++.++..++.++.|+++|| +|||++++.+.++..++..++.+... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 127 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF---------------------ALSV 127 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc---------------------ccch
Confidence 8999999999999999999999999999 69999999999998888877765422 1345
Q ss_pred HHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH---HHhccccchhhHHHH
Q 007827 139 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI---VYVQSDVSWAWGLGI 215 (588)
Q Consensus 139 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~---~~~~~~~g~~~~~~~ 215 (588)
+.++++|+++|++.+...+...++++|.+++++ ++...++++.+.++|..+++.++ ....+..+||+.|++
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~ 201 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 678999999999999999999999999997422 23557888889999999999998 666677899999998
Q ss_pred HHHHHHHHHHHHH
Q 007827 216 PAFMMFLSCAMFF 228 (588)
Q Consensus 216 ~~~~~~~~~~~~~ 228 (588)
.++..++.++..+
T Consensus 202 ~~~~~~~~~~~~~ 214 (481)
T TIGR00879 202 QLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 6655554444333
No 32
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.90 E-value=1.3e-21 Score=205.15 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=126.9
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
.|.+. .+.+++.+++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+.+.++
T Consensus 19 ~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 19 VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHH--------
Confidence 44444 44567788999999999999999999999999999999999 699999999999999988887776
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+++.++++|++.|++.+...+.....+.+.+++ + ++...++...+.++|..+++.+
T Consensus 89 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~g~~~~~~~ 145 (377)
T TIGR00890 89 ----------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD---K----RGLASGIIIGGYGLGSFILSPL 145 (377)
T ss_pred ----------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc---c----cHHHHHHHHHhcchhHhHHHHH
Confidence 4677889999999999998877777777877752 1 2456788888888898877777
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
.+.+.+..|||+.|++.++..++..+..+
T Consensus 146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 146 ITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 77777778999999987776655544433
No 33
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.90 E-value=2.9e-21 Score=211.55 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=121.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchh-hhH-----HHHHHHHHHHHhhhhhhhhhhccccchhHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSIT-ATT-----LINIFSGTTNFATLLGAFLSDTYFGRYKTLGF 96 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~-~~~-----~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~ 96 (588)
++......+..+++.+.+..+ .+...++.++++.+... ..+ +.++..++..++++++|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 344445556667777765554 44555777777544322 122 2466778899999999999999 699999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
++++++++.++++++.+..+. ....+..++++|+++|++.|+..+...++++|.+|++ +|
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~----------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~----~R 152 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATI----------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR----KR 152 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHH----------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC----CC
Confidence 999999999998887431100 0001124889999999999999999999999999742 22
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhc--------cccchhhHHHHHHHHHH
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMF 221 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~~ 221 (588)
+...++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 153 --g~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 153 --GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 23466666666777777766554332 25899999998665443
No 34
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.90 E-value=1.8e-21 Score=205.03 Aligned_cols=157 Identities=11% Similarity=-0.012 Sum_probs=118.1
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
+...+| .+++++|+|.++.|++.+.+.+++.+++++.|+++|| +|||+++..+......+. ......
T Consensus 10 ~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~-~~~~~~---------- 76 (368)
T TIGR00903 10 FSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAA-GRLLDP---------- 76 (368)
T ss_pred HHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH-HHHHHh----------
Confidence 334444 5567999999999999999999999999999999999 699987665444433332 222221
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
.++..++++|+++|++.+.. +.....++|.+|+ +.++.+.++...+..+|.++++.++++
T Consensus 77 -------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~------~~r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 77 -------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIRE------ERRDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred -------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25778999999999999864 4455666888863 223467888899999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
+.+.+|||+.|++.++..++..++.++..|
T Consensus 137 l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 137 IYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999866665555444443333
No 35
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.90 E-value=7.5e-22 Score=214.16 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=122.7
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
..+++ .+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..++.+++.++.
T Consensus 39 ~~~~~-~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------- 105 (455)
T TIGR00892 39 TVFFK-ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS----------- 105 (455)
T ss_pred hhhHH-HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh-----------
Confidence 33344 4567999999999999999999999999999999999 7999999999888888887776652
Q ss_pred CCCCCCCCCCCchhHHHHH-HHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 124 NQDSGACPGPTPWQLAFLF-TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
+.+.++ ..|++.|++.+...+...+++.+.++ + .++...++.+.+..+|..++|.++++
T Consensus 106 -------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~---~----~r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 106 -------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY---R----RRPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred -------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH---h----hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344554 45688899998876667778888774 1 13467888888999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+.+.+|||++|++.+++.++.++..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9998999999999887666555444433
No 36
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.90 E-value=9.4e-21 Score=204.26 Aligned_cols=173 Identities=15% Similarity=0.188 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcC---CCchhhhH---HHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFN---MKSITATT---LINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g---~s~~~~~~---~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
+....+..+++.+.... .+++..++.++++ .+..+.+. +.+...++..++++++|+++|| +||||++..+.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 33444456666666555 4556667778874 55554333 3444555555999999999999 699999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.++.++++++.+.... -..++..+++.|+++|++.|...+...++++|.+|++ +| +
T Consensus 102 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~----~r--g 159 (432)
T PRK10406 102 MMCFGSLVIACLPGYETI----------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG----RK--G 159 (432)
T ss_pred HHHHHHHHHhhcCCchhH----------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC----cc--c
Confidence 999999888776321000 0013456889999999999999999999999999742 22 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc--------cccchhhHHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMFL 222 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~~~ 222 (588)
...+..+...+.|..+++.+...+. ..+|||++|++.++..++
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 4566666677778777776654443 257999999987665443
No 37
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.89 E-value=5.7e-21 Score=207.15 Aligned_cols=156 Identities=15% Similarity=0.045 Sum_probs=118.3
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
...+|+.++ |+|..+.+++.+.+.++..++++++|+++|| +|||++++.+.++.+++.+.+.+....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 9999999999999999999999999999999 699999999998888888777664210
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHH-HHHHHHHHhc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM-ISLTVIVYVQ 204 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~~~i~~~~~ 204 (588)
..+...+++.|++.|++.+...+.....+.+++++ +.++.+.++++.+.++|+. .+|+++..+.
T Consensus 117 ---------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 117 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred ---------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 02466788899999999999888777888888863 2234567888888888864 4555443333
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHh
Q 007827 205 SDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
...|||+.|++.++..++..++..+
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999877665554444333
No 38
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.89 E-value=6.9e-21 Score=204.58 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=133.9
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
++......+..+...+..+... ++..++++++|+|+.+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIF-YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 4444444455555555554543 44456678999999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+.+.++ .+.+.++++|++.|++.+...+....++.|.+++++ ++.+.
T Consensus 95 ~~~~~~~~~------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~ 144 (426)
T PRK12307 95 VGTGLSGLA------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKAS 144 (426)
T ss_pred HHHHHHHHH------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhh
Confidence 988887776 357789999999999999999999999999987421 23567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~ 218 (588)
+++..+..+|.++++.+.+.+.+.+|||+.|++...
T Consensus 145 ~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 145 AFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred hHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 788888899999999999998888999999987543
No 39
>PRK09952 shikimate transporter; Provisional
Probab=99.89 E-value=2e-20 Score=202.11 Aligned_cols=176 Identities=11% Similarity=0.116 Sum_probs=123.2
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhc--CCCchhhhHHH-----HHHHHHHHHhhhhhhhhhhccccchhH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIF--NMKSITATTLI-----NIFSGTTNFATLLGAFLSDTYFGRYKT 93 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~lsDr~~Grr~~ 93 (588)
+++|.....++..+++.+....+....+.++.+++ +.++.+ +++. ++..++..+++++.|+++|| +|||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHH
Confidence 33455555566667777776665555666666665 677764 4443 24445677888999999999 699999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+..+.+++.++.++++++.+..+. .......++++|+++|++.|...+....++.|.+|++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~--- 157 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTI----------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN--- 157 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHH----------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC---
Confidence 999999999998888886431100 0001235888999999999999999999999998742
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhc--------cccchhhHHHHHHHHH
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMM 220 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~ 220 (588)
+| +...+....+..+|..++..+...+. ..+|||++|++.++..
T Consensus 158 -~r--g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 158 -KK--AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred -CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 22 34456666677777777766655543 3579999998876644
No 40
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.89 E-value=6.8e-21 Score=202.26 Aligned_cols=172 Identities=14% Similarity=0.137 Sum_probs=140.0
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
+++|+......+..+...+..+......+ .+++++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45566666666777777777666655555 5578899999999999999999999999999999999 699999999988
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+..++.+++.+. .+++.+++.|++.|++.+...+...+++.|.++++ .++
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~ 135 (405)
T TIGR00891 86 LFSAGTLACGFA------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRN 135 (405)
T ss_pred HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhh
Confidence 888888777665 35677889999999999999999999999999742 223
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVS--WAWGLGIPAFMMFLS 223 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g--~~~~~~~~~~~~~~~ 223 (588)
...++.....++|..+++.+++.+.+..+ ||+.|.+..+..++.
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 56888888899999999999998887666 999998765544433
No 41
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.89 E-value=9.6e-21 Score=196.26 Aligned_cols=345 Identities=20% Similarity=0.248 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
+....+......+.....++.|. +++|.+..+.+++.+...++..++.++.|+++|| +||||.+..+.++..++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHH
Confidence 34455666777777777788776 5679999999999999999999999999999999 699999999999988888877
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.+. .+.+.+++.|++.|++.+...+...+++.|.++++ .++..+++.+..
T Consensus 82 ~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 131 (352)
T cd06174 82 AFA------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAG 131 (352)
T ss_pred HHh------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHH
Confidence 765 35678899999999999999999999999999742 223568888899
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCcc
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWL 268 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (588)
.++|..++|.+++.+.+..+|++.+++..+..++..++..+..| ..
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------------------- 177 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR-------------LL--------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HH---------------------
Confidence 99999999999999998889999999877766655544332210 00
Q ss_pred ccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 007827 269 TLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQ 348 (588)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (588)
+.. .+................
T Consensus 178 --------------------------------------------------------~~~---~~~~~~~~~~~~~~~~~~ 198 (352)
T cd06174 178 --------------------------------------------------------LLL---ALAFFLLSFGYYGLLTYL 198 (352)
T ss_pred --------------------------------------------------------HHH---HHHHHHHHhHHHHHHHHH
Confidence 000 000001111111111111
Q ss_pred cceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHH-HHHHHHHHHHHHHHH
Q 007827 349 QTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ-RMAIGMILAIFTMII 427 (588)
Q Consensus 349 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~-~~~~g~~l~~~~~~~ 427 (588)
+.+.....+..+ ...........++..++.++..+ +.||.++| + .+..+.++..++++.
T Consensus 199 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~i~~~~ 258 (352)
T cd06174 199 PLYLQEVLGLSA---------AEAGLLLSLFGLGGILGALLGGL----LSDRLGRR-------RLLLLIGLLLAALGLLL 258 (352)
T ss_pred HHHHHHhcCCCH---------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-------hHHHHHHHHHHHHHHHH
Confidence 111110000000 11223344445555555555444 47887765 3 566777777777666
Q ss_pred HHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHH
Q 007827 428 SGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISN 507 (588)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~ 507 (588)
.... .+.+......++.+++.+...+....++.|..|++.|++.+|+.+....++.
T Consensus 259 ~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (352)
T cd06174 259 LALA------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGG 314 (352)
T ss_pred HHHh------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 6543 2355667788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 007827 508 YLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFL 558 (588)
Q Consensus 508 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~ 558 (588)
.+++.+.+.+.+.. ++...+.+.+++.+++.+..+
T Consensus 315 ~i~~~i~g~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 315 ALGPLLAGLLLDTG----------------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHhccc----------------CcchHHHHHHHHHHHHHHHhe
Confidence 99999999987532 345677777777777765543
No 42
>TIGR00898 2A0119 cation transport protein.
Probab=99.89 E-value=1.2e-20 Score=207.43 Aligned_cols=146 Identities=14% Similarity=0.230 Sum_probs=119.8
Q ss_pred HHHHhcCCC---chhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007827 50 YLTTIFNMK---SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQD 126 (588)
Q Consensus 50 yl~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (588)
-+.++++++ ..+.+++.+++.++..++.++.|+++|| +|||++++++.++..++.++.+++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~--------------- 177 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFS--------------- 177 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHc---------------
Confidence 356789999 8999999999999999999999999999 699999999999888888777765
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 007827 127 SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~ 206 (588)
.+++.+++.|++.|++.+...+...+++.|.++++ + ++...++...+..+|.++++.++..+.+
T Consensus 178 ---------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~---~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 241 (505)
T TIGR00898 178 ---------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK---Q---RAIVGTLIQVFFSLGLVLLPLVAYFIPD- 241 (505)
T ss_pred ---------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChh---h---hHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence 35788999999999999999999999999999742 1 2345666677788898888888766543
Q ss_pred cchhhHHHHHHHHHHHHHHHHHh
Q 007827 207 VSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 207 ~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
||+.|++.++..++..+..++
T Consensus 242 --wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 242 --WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred --HHHHHHHHHHHHHHHHHHHHh
Confidence 999998877766555544433
No 43
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.89 E-value=1.7e-20 Score=198.83 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....+......+...+.+|. +++++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHH
Confidence 334444455555555566666665 467899999999999999999999999999999999 699999999999999988
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+++.++ .+++.+++.|++.|++.+...+....++.|.++++ + ++...+.+
T Consensus 83 ~l~~~~------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~ 132 (382)
T PRK10091 83 AMFTLS------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG----K--VTAAVAGM 132 (382)
T ss_pred HHHHHh------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH----H--hhHHHHHH
Confidence 887776 35788999999999999988888888888887531 1 23457777
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
..+..+|..++|.+++++.+..|||+.|++.++..++..+.
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999998899999999877765554443
No 44
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.89 E-value=2.1e-21 Score=201.98 Aligned_cols=168 Identities=23% Similarity=0.340 Sum_probs=139.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
+..++..+........++.++.+++|.|..+.+++.+.+.++..++.++.|+++|| +||||+++.+.++.+++.+++.+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhh
Confidence 45556666666666777768889999999999999999999999999999999999 69999999999998888555555
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
+. +.+.++++|++.|++.+...+...+++.|.++++ .++..++..+...+
T Consensus 82 ~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 82 AS------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFS 131 (352)
T ss_dssp HC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHH
T ss_pred hh------------------------hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhh
Confidence 41 3458999999999999999999999999999742 23456889999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 191 FAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|..++|.+++++.+.++|++.|++.++..++..++...
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFIL 170 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccchhhhhhhccccccccccccchhhhhhhhHhh
Confidence 999999999999998899999999988877777654333
No 45
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.3e-21 Score=195.87 Aligned_cols=176 Identities=11% Similarity=0.018 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHhhhhhh---hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSS---NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.+++..++...++|.+.- ...+++.++.++|.+|.|.+.+.+.+.+.++..+.|.++|| .+.|+.+-.++++.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHH
Confidence 5666777788888887653 45678888999999999999999999999999999999999 6999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
..+++.++ .+...+.+..++.|+..|.-+|++...++.+|+.++ |++..+
T Consensus 107 ~nil~Gfs------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~s 156 (448)
T COG2271 107 VNILFGFS------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWS 156 (448)
T ss_pred HHHHHhhh------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEE
Confidence 99998887 357788899999999999999999999999997432 345699
Q ss_pred HHHHHHHHHHHHHHHHH--HHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 184 WYYFTFTFAMMISLTVI--VYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+++.+.|+|+.+.|++. +++..+++||..|+.+++..++..++.++.-++
T Consensus 157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999 899988899999999988776655555544444
No 46
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.88 E-value=1.1e-20 Score=202.88 Aligned_cols=393 Identities=9% Similarity=-0.027 Sum_probs=217.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+..+.+.+..++..++++.+.++++.|+++++|+|..+.|++.+++.++..+++++.|+++|| +||||+++++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 345555566777777777889999999999999999999999999999999999999999999 6999998876665554
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+..........+... .......+++.++.+.+.....+.. .++.++ . .+.++..++
T Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~--~~~~g~~~g 144 (420)
T PRK09528 89 LFGPFFIYVFAPLLQ----------------YNILLGAIVGGIYLGFGFLAGAGAI----EAYIER--V--SRRSGFEYG 144 (420)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhhhccchhhh----hhHHHH--H--Hhhccccch
Confidence 433221110000000 0011112223333333333333322 222211 1 111234566
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 263 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+..+++.++++...++ + +
T Consensus 145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~----- 205 (420)
T PRK09528 145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-L------------G----- 205 (420)
T ss_pred hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-h------------h-----
Confidence 6777789999999999998876 5899999887766655555444433321110000000 0 0
Q ss_pred CCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh-HHHHHHHHH
Q 007827 264 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP-IWASAIVYY 342 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 342 (588)
+ ++ .....+ +. .+....+....... .......+.
T Consensus 206 ------------~----~~--~~~~~~--~~-------------------------~~~l~~~~~~~l~l~~~~~~~~~~ 240 (420)
T PRK09528 206 ------------A----NA--SAVSLK--DA-------------------------LALLKLPKFWFLVLYVIGVACFYD 240 (420)
T ss_pred ------------c----cc--ccccHH--HH-------------------------HHHccCCCeEeehHHHHHHHHHHH
Confidence 0 00 000000 00 00000011101111 111111111
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
....+.+.+...+.. +...+ . ...+.+..++.+...++.++..+ +.||+++| +.+..+.++..
T Consensus 241 ~~~~~~~~~~~~~~~--~~~~~---~-~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~l~~ 303 (420)
T PRK09528 241 VFDQQFPNFFASFFA--TPEQG---T-RVFGYLNSFQVFLEALIMFFAPF----IINRIGAK-------NALLLAGTIMA 303 (420)
T ss_pred HHHHHHHHHHHHHHh--ccCcc---h-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcc-------hhhHHHHHHHH
Confidence 122222222111100 00110 0 00112233333333444444333 48887776 34555666666
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHH-HHH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFV 501 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~-~~~ 501 (588)
++++..+.. .+.++++...++.+++.....+....++.+.+|++.+++..+. +++
T Consensus 304 ~~~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 359 (420)
T PRK09528 304 VRIIGSGFA------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQF 359 (420)
T ss_pred HHHHHHHhc------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHH
Confidence 665555542 2344555667777777777777778899999999999988766 677
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
...+|..+++.+.+.+.|.. +++..|...+++.++..++.+...+
T Consensus 360 ~~~lg~~ig~~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 360 AKQLGAVFLSTLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999998754 3456788877777766655555443
No 47
>PRK03699 putative transporter; Provisional
Probab=99.88 E-value=2.5e-20 Score=198.51 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=133.7
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
++|..+...+..++...........+|. +.+++|+|..+.+++.+.+.++..++++++|+++|| +||||++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 4455555555555555554455555555 467899999999999999999999999999999999 69999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
.++.+++.++ .+++.+++.|+++|++.+...+...+++.|.+|+ ++ ++..
T Consensus 83 ~i~~~l~~~~------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~----~~--r~~~ 132 (394)
T PRK03699 83 ILAVAGLMFS------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG----KQ--RGSR 132 (394)
T ss_pred HHHHHHHHHc------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhccc----ch--HHHH
Confidence 8888777765 3567788999999999999888888999998853 12 2345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQ-SDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
.+..+....+|+.++|.+.+++. +..|||+.|.+.++..++..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 66666677888889999888765 4579999998877655544433
No 48
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.88 E-value=1.1e-20 Score=206.23 Aligned_cols=395 Identities=14% Similarity=0.138 Sum_probs=231.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
.+..+...+........+| .+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.++..++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 8 MLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHh
Confidence 3444455555444444454 5567899999999999999999999999999999999 6999999999999998888877
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.+ .++..++++|+++|++.+...+...+++.|.+|+ +.++.+.++++...
T Consensus 86 ~~------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~ 135 (485)
T TIGR00711 86 VA------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP------EKRGRAMAIWGLTV 135 (485)
T ss_pred Cc------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH
Confidence 65 3567889999999999999999999999999963 22346788888999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHH----HHHhhccCCCCC
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVA----AIKKRHLKLPEE 265 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 265 (588)
.+|..++|.+++++.++++||+.|++.+...++.+++..+..++.++++ .++.+.....+.. .......+.++.
T Consensus 136 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~~ 213 (485)
T TIGR00711 136 LVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPER 213 (485)
T ss_pred HHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999999877666555554443333311111 1111111100000 000000000000
Q ss_pred CccccccCCCcccccCCCCCCCccchhhh---hcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHH
Q 007827 266 PWLTLHNHIPKNCINSKLPHTGQFRCLDK---AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 342 (588)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (588)
.+. ..+....... .........+.+.+.+..+++.++ +++.....+...+....++
T Consensus 214 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 272 (485)
T TIGR00711 214 GWF----------------DSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFK-----YRNFTIGCVYMSLLGLGLY 272 (485)
T ss_pred CCC----------------CchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHc-----CCChHHHHHHHHHHHHHHH
Confidence 000 0000000000 000000000000011111121111 1111111111111122222
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
......+.+. ....|.+. ...........++.+++.++..+ +.||.++| +.+.++..+.+
T Consensus 273 ~~~~~~p~~~-------~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~----l~~r~~~~-------~~~~~g~~~~~ 332 (485)
T TIGR00711 273 GSFYLLPLYL-------QQVLGYTA--LQAGLHILPVGLAPMLSSPIAGR----MGDKIDPR-------KLVTIGLILYA 332 (485)
T ss_pred HHHHHHHHHH-------HHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHH----HHhhcCcH-------HHHHHHHHHHH
Confidence 2211111111 11112000 01122233334444555555443 36776554 45666777777
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVG 502 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~ 502 (588)
+++.+..... ..+.+.+..+...++.+++.+...++......+..|++.|++++|+.++.
T Consensus 333 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 333 VGFYWRAFTF--------------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred HHHHHHhccC--------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence 6666554210 11234455566678889998888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007827 503 FAISNYLNGFLISMVHR 519 (588)
Q Consensus 503 ~~ig~~l~~~~~~~l~~ 519 (588)
..+|+.+++.+.+.+.+
T Consensus 393 ~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 393 RQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988865
No 49
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.88 E-value=8.3e-20 Score=194.99 Aligned_cols=171 Identities=8% Similarity=0.084 Sum_probs=131.4
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
..+|.+....+..+....+.+....+++.++ +++|+|..+.+++.+.+.++..+++++.|+++|| +||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 3456666666777777777777777888887 5789999999999999999999999999999999 6999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++...+..... . ..+++.+++.|++.|++.+...+...+.+.+.+++ +.++.
T Consensus 88 ~~~~~~~~~~~~~-~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~------~~~g~ 141 (402)
T TIGR00897 88 WCVGHAAFIVFGL-G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ------DNLSS 141 (402)
T ss_pred HHHHHHHHHHHhc-c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH------HHHHH
Confidence 8877655432110 0 02466778899999999887777777777787763 22346
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHH
Q 007827 181 FFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGIPAFM 219 (588)
Q Consensus 181 ~~~~~~~~~~~g~-~i~~~i~~~~~~~~g~~~~~~~~~~~ 219 (588)
+.++++...++|. .++|.+++++.+.+||+..++.....
T Consensus 142 ~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 142 AVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 6888888888886 57899999988888876665554433
No 50
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.88 E-value=3.9e-20 Score=195.39 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=138.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+..+.+....+....+.....+.+|. +.+++|.|..+.+++.+.+.++..+++++.|+++|| +||||.+..+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 82 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFAL 82 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHH
Confidence 33333334444444554555555554 467899999999999999999999999999999999 6999999999988888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+.+.+... .+.+.+++.|++.|++.+...+...+++.|.+|+ +.++..++
T Consensus 83 ~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 132 (385)
T TIGR00710 83 SSLGLALS------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPG------EELSRIYS 132 (385)
T ss_pred HHHHHHHH------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc------HHHHHHHH
Confidence 88777665 3567788999999999999999999999999863 22346788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+.+...++|..++|.+++++.+.++|++.|++.++..++..+.....
T Consensus 133 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 133 ILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999988999999988776665555544433
No 51
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.88 E-value=1.5e-20 Score=205.18 Aligned_cols=173 Identities=9% Similarity=-0.004 Sum_probs=123.5
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.........++..+..+.+...++ ++.+++|+|..+.+++.+.+.+++.++++++|+++|| +|||+++..+.++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence 3334444444444555455444444 5678999999999999999999999999999999999 6999999998888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+.++++++ .++..+++.|+++|++.+...+ ...+++|.+|++ + ++.+.+
T Consensus 114 ~~~~~~~~------------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~----~--rg~a~g 162 (476)
T PLN00028 114 AVFCMSLV------------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK----I--VGTANG 162 (476)
T ss_pred HHHHHHHh------------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh----h--eeHHHH
Confidence 87777665 3466778899999999886543 456778888631 2 235577
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----c-----ccchhhHHHHHHHHHHHHHHHHHh
Q 007827 184 WYYFTFTFAMMISLTVIVYVQ----S-----DVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~----~-----~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 163 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 163 IAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 766666777777766554432 1 258999999887766555444443
No 52
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.88 E-value=8.7e-20 Score=194.26 Aligned_cols=177 Identities=12% Similarity=0.072 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHH-HHHHhhhhhhhhhhccccchhHHH-HHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLG-FASVASFL 103 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~l~-~~~~~~~i 103 (588)
.+..++..++..++.....+.++.|+++++|+|.++.|++.+...+ +..++.+++|+ +|| +||||.++ .+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHH
Confidence 3445556777788877888999999999999999999999876655 55555555565 999 69998754 44444445
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+..+..++ .+++.+++.+.+.+...+...|...++..|..+ ++.+..+...+
T Consensus 95 ~~~~~~~~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 146 (393)
T PRK15011 95 ACTLFAWN------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHAD----KTGREAVMFSS 146 (393)
T ss_pred HHHHHHHh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh----hccchHHHHHH
Confidence 55555554 244555444444444444566766777766543 12222223346
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
....+.++|.+++|.+++++.+++|||..|++.++..++..+...+..|
T Consensus 147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7777889999999999999999899999999887766555554444333
No 53
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.88 E-value=4.4e-20 Score=202.42 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=135.5
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
++|+....+.+..+...+..+.....+ .++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 445555555555555566555554444 45668999999999999999999999999999999999 6999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.+++.+.+.+. .+++.+++.|++.|++.+...+...+++.|.+++ +.++.
T Consensus 95 ~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~ 144 (496)
T PRK03893 95 FSVGTLACGFA------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK------HLRNK 144 (496)
T ss_pred HHHHHHHHHHH------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHH
Confidence 88888877775 3577889999999999999999899999999863 22345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~ 218 (588)
..+.++...++|..++|.+.+++.+.++||+.|++..+
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 67888889999999999999999999999999887544
No 54
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.87 E-value=5.2e-20 Score=195.05 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=129.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
.|..+.+....++..+......+.+|.|.. ++|+|..+.|++.+.+.++..+++++.|+++|| +|||+.+..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345666677777888887778888888875 689999999999999999999999999999999 699999999999988
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++...+.++ .+++.++++|+++|++.+...+...+.+.+..++ +.++..+
T Consensus 83 ~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLM------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS------RNRGRLL 132 (381)
T ss_pred HHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHH
Confidence 888777765 3577888999999999999888777777776653 1234678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhh
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAW 211 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~ 211 (588)
+.+..+.++|..+||.+++.+.+...+..
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 88888999999999999998877543333
No 55
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.87 E-value=6.1e-20 Score=199.78 Aligned_cols=150 Identities=10% Similarity=0.100 Sum_probs=124.7
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 133 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (588)
+++++..+.|++.+.+.+++.++++++|+++|| +|||+++..+.++..++.+++..+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 689999999999999999999999999999999 69999999998888887766654421
Q ss_pred CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc-chhhH
Q 007827 134 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWG 212 (588)
Q Consensus 134 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~-g~~~~ 212 (588)
.+...+++.|+++|++.+...+....+++|.+|+ +.++.+.++...+.++|.+++|.+++++.+.+ |||+.
T Consensus 129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 2356789999999999999999999999999963 22356788888899999999999999998884 99999
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 007827 213 LGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~ 232 (588)
|++.++..++..++.+...+
T Consensus 201 f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred hhhhhHHHHHHHHHHHHHhc
Confidence 99887766555444444333
No 56
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.87 E-value=8.3e-20 Score=195.70 Aligned_cols=156 Identities=14% Similarity=0.051 Sum_probs=127.6
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
...+.+|. +.+++|.+..+.++..+++.+++.+++++.|+++|| +|||++++.+.+++.++.+++.++
T Consensus 34 ~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a---------- 101 (413)
T PRK15403 34 LIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT---------- 101 (413)
T ss_pred hhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc----------
Confidence 33344444 567899999999999999999999999999999999 699999999999888888887775
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+++.++++|+++|++.+...+...+++.|.+++++ ++..++++....++|..++|.+++
T Consensus 102 --------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~ 161 (413)
T PRK15403 102 --------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGA 161 (413)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999988766666788888886321 234578888889999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+.+++|||+.|++.++..+++.+..++
T Consensus 162 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 162 ALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9988889999999887766666554333
No 57
>TIGR00895 2A0115 benzoate transport.
Probab=99.87 E-value=6.1e-20 Score=194.17 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=133.5
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|+.........+......+.... ..+++.+++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFS 93 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHH
Confidence 33333333444444444443333 4445567899999999999999999999999999999999 699999999988888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++.+. .+.+.+++.+++.|++.+...+...+++.|.+|++ .++...
T Consensus 94 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~ 143 (398)
T TIGR00895 94 VFTLLCALA------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAV 143 (398)
T ss_pred HHHHHHHHc------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhH
Confidence 877776654 35677889999999999999999999999998642 223567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
++.....++|..+++.+++++.+..||++.|++.++..++..++
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 88888999999999999999999899999998875544444333
No 58
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.87 E-value=2.3e-19 Score=191.03 Aligned_cols=163 Identities=13% Similarity=0.158 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....++..++.......++.. .++++.++.+.+++.+.+.+.+.++.+++|+++|| +||||+++++.++..++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHH
Confidence 3344455666666554444445544 57899999999999999999999999999999999 699999999999988877
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+.+.... + .++.|+++|++.+...|...+++.|.+|+ +.++.+.++.
T Consensus 83 ~~~~~~~------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~------~~~~~a~~~~ 129 (393)
T PRK11195 83 LLMLFGI------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG------EKLVKANGWM 129 (393)
T ss_pred HHHHHHH------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHH
Confidence 7665542 2 26789999999999999999999999974 2245678888
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
....++|..+||.+++++.+. .|+..+.+.....+++.
T Consensus 130 ~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 130 EGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 888999999999999998875 47777766555444333
No 59
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.87 E-value=4.1e-19 Score=188.36 Aligned_cols=357 Identities=11% Similarity=-0.039 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH-HHHHHH-
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA-SFLGML- 106 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~-~~i~~~- 106 (588)
+....+....++....+++|.|++ ++|+|..+.|++.+.+.+...+++++.|.++|| +||++........ ..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHH
Confidence 344455555555566788889985 689999999999999999999999999999999 6985443222211 111111
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
.+..+ .+++.+++.|++++.+.+...|...++..+ .+ ++ ++..++...
T Consensus 87 ~~~~~------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~---~~----~~~~~g~~~ 134 (382)
T TIGR00902 87 FSAGA------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ---KQ----FGLDYGKVR 134 (382)
T ss_pred HHHhh------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH---HH----cCCCccHHH
Confidence 11122 357788889999999988888888787654 22 11 124588888
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCC
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEP 266 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (588)
...++|.+++|.+++++.+++|||..|++......+.+ +.+...++. ++++++.+.
T Consensus 135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~-------------------- 190 (382)
T TIGR00902 135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAIPED-------------------- 190 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCcccccc--------------------
Confidence 89999999999999999999999999887655432222 222222211 010000000
Q ss_pred ccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHHHHHHHHHHH
Q 007827 267 WLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVAL 345 (588)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (588)
+. ...+ .+ .+....++.... ....+........+
T Consensus 191 --------------~~-~~~~-------------------------~~-----~~~l~~~~~~~~l~~~~l~~~~~~~~~ 225 (382)
T TIGR00902 191 --------------ES-QGDS-------------------------AF-----IALLKNPMNLRFLAAVCLIQGAHAAYY 225 (382)
T ss_pred --------------cc-ccch-------------------------hH-----HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00 000011112111 11112222222222
Q ss_pred hcccceeeeeccccccccCCccccccchhh---hhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 346 VQQQTYVVFQALQSDRRVGNTHFKIPAASY---AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
...+.++ .+ .| .+.... .....+..++..++.+++ .||+ +.++.+.++.++..
T Consensus 226 ~~~~~~l-------~~-~g-----~s~~~~g~l~~~~~~~~i~~~~~~~~l----~~r~-------g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 226 GFSAIYW-------QA-AG-----ISASATGLLWGIGVLAEIIIFAFSNKL----FQNC-------SARDLLLISAIACV 281 (382)
T ss_pred HHHHHHH-------HH-CC-----CCHhHHHHHHHHHHHHHHHHHHHhHHH----HhhC-------CHHHHHHHHHHHHH
Confidence 2221111 11 22 222222 223333334444433332 4554 34466778888888
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH-H
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-V 501 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~-~ 501 (588)
+.....+.. .+.+.++...++.+++.+...+....++.+. |++.|++++++++ +
T Consensus 282 ~~~~~~~~~------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~ 336 (382)
T TIGR00902 282 GRWAIIGAI------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNAL 336 (382)
T ss_pred HHHHHHHhH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHH
Confidence 777666543 3556667678999999999999999999988 9999999999986 5
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHH
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNF 554 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~ 554 (588)
...+|..+++.+.|.+.+.. +. ..|+..+++.+++.
T Consensus 337 ~~g~g~~~g~~~~G~l~~~~----------------g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 337 AMGGLIAIFTAFAGFIYPTL----------------GA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------cH-HHHHHHHHHHHHHH
Confidence 67899999999999998754 22 46777777776654
No 60
>PRK11043 putative transporter; Provisional
Probab=99.87 E-value=2.1e-19 Score=191.55 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=128.6
Q ss_pred HHHHHhhhhhhhHHHH--HHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 35 FEKLGTTGTSSNLLVY--LTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~y--l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
...+.+.....++|.+ +++++|.|+.+.+++.+.+.++..+++++.|+++|| +|||+.+..+.++..++.+++.+.
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~- 91 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWV- 91 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 3344444444445544 568999999999999999999999999999999999 699999999988888777777665
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA 192 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 192 (588)
.+.+.+++.|+++|++.+...+...+++.|.++++ + +...++......++|
T Consensus 92 -----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~ 142 (401)
T PRK11043 92 -----------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ---K---ANRVFATIMPLVALS 142 (401)
T ss_pred -----------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH---H---HHHHHHHHHHHHHHH
Confidence 35677889999999998887777778888988632 1 234566666778889
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
..++|.+++++.+.+|||+.|++..+..++..++.+.
T Consensus 143 ~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 143 PALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999899999998877666555444433
No 61
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.87 E-value=2.8e-19 Score=190.21 Aligned_cols=173 Identities=12% Similarity=0.072 Sum_probs=136.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
+.+|.++......++.........+.+|.+ .+++|+|+.+.+++.+.+.++..++.++.|+++|| +||||.+..+.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence 345666666666666666655555556554 57899999999999999999999999999999999 6999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.+.+... .+.+.+++.|++.|++.+...+....+..|.++. +.++.
T Consensus 83 ~~~~~~~~~~~------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~ 132 (394)
T PRK11652 83 FILGTLVALFA------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG------TQLRH 132 (394)
T ss_pred HHHHHHHHHHH------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH------HHHHH
Confidence 88887776665 3567788999999999888777777777787752 22345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
..+.+..+..+|..++|.+++.+.+..|||+.|++.++..++..+
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 677777888899999999999998888999999987665544433
No 62
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.86 E-value=6.3e-20 Score=198.19 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=120.7
Q ss_pred HHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007827 47 LLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQD 126 (588)
Q Consensus 47 l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (588)
..+++++ +|+|.++.+++.+.+.++..+++++.|+++|| +|||+.+..+.++.+++.+++......
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~------------ 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA------------ 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc------------
Confidence 3446665 59999999999999999999999999999999 699999999888888877766553210
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh-cc
Q 007827 127 SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV-QS 205 (588)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~-~~ 205 (588)
..+...+++.|++.|++.+...+.....+.|.+|+++ ++.+.++++...++|+.+++.+.+.. ..
T Consensus 115 --------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 115 --------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred --------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 0245667888999999999988888888899886321 24568888888999999988877654 44
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHh
Q 007827 206 DVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
..+||+.|++.++..++..++.++
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999877766655444333
No 63
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.86 E-value=5.5e-20 Score=192.96 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=126.4
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
...+++.+++|+|..+.+++.+...++..++.++.|+++|| +|||+.++.+.++..++.+++.++
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-------------- 80 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFS-------------- 80 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHh--------------
Confidence 34457788999999999999999999999999999999999 699999999999988888887776
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHH-HHHHHhc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL-TVIVYVQ 204 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~-~i~~~~~ 204 (588)
.+.+.+++.|++.|++.+...+...+++.|.+++++ ++...++.....++|..++| .+++.+.
T Consensus 81 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 81 ----------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred ----------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999997422 23457777788899999999 5667777
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHh
Q 007827 205 SDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+..+|++.|++.++..++..++.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhe
Confidence 7789999998877655554444333
No 64
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.86 E-value=9.2e-19 Score=187.88 Aligned_cols=387 Identities=11% Similarity=0.013 Sum_probs=217.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGR-YKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-r~~l~~~~~~~~i~~~~~~~ 110 (588)
..++...++-.+.++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +|| |+++.++.++.+++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHH
Confidence 4455556655677999999999999999999999999999999999999999999 665 66777777776666656555
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCC-------CCCCCCccchhhhhh
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFN-------PNTESGKQGITSFFN 183 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 183 (588)
. .+++.+++.|++.+++.+...+...++..+... ++ ..+. +.+
T Consensus 89 ~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~-~~~~----r~~- 138 (418)
T TIGR00889 89 V------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTD-FPPI----RVM- 138 (418)
T ss_pred h------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhc-CCCe----eee-
Confidence 4 245667788888888877666655544322111 10 1111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 263 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
..+|.+++|.+++.+.....|. +|++.++..++..++.+ ..|+.++.+.+++. . ..+ +.+.
T Consensus 139 -----G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~-~-~~~-------~~~~--- 199 (418)
T TIGR00889 139 -----GTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKM-S-IKV-------MLGL--- 199 (418)
T ss_pred -----hhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcccccc-C-HHH-------Hhhh---
Confidence 2478888888888774333344 34454444443333322 22321111000000 0 000 0000
Q ss_pred CCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHHHHHHHH
Q 007827 264 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYY 342 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (588)
. + .+..+.+..... +..++......
T Consensus 200 --------------------------~-----------------------~-----~~~~k~~~~~~~~~~~~~~~~~~~ 225 (418)
T TIGR00889 200 --------------------------D-----------------------A-----FILFKNKRMAIFFFFSMLLGAPLQ 225 (418)
T ss_pred --------------------------h-----------------------H-----HHHhcCCCeeeHHHHHHHHHhHHH
Confidence 0 0 000000000001 11111111111
Q ss_pred HHHhcccceeeeeccccccccCCcccc-ccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFK-IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA 421 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~ 421 (588)
..+...+.+.... +. +...+ .++. ........++.+..+++..+.++ +.||+++| +.+.++.++.
T Consensus 226 ~~~~~~~~~~~~~-g~-~~~~~-~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr~g~r-------~~l~~~~~~~ 291 (418)
T TIGR00889 226 ITNIFGNGFLHEF-GR-NPEFA-DSFVVKNASIWMSLSQFSEIFFILTIPF----FLKRFGIK-------KVMLLSLVAW 291 (418)
T ss_pred HHHHhHHHHHHHh-cc-ccccc-chhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHhCcH-------HHHHHHHHHH
Confidence 1111111111000 00 00000 0000 01122233334444444444333 47887665 5667777777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH-
Q 007827 422 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF- 500 (588)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~- 500 (588)
++++.+..... + .....+.+++..++.+++++...+....++.|.+|++.|++++|+.+
T Consensus 292 ~v~~~l~~~~~----------~----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 292 ALRFGFFAYGD----------P----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTL 351 (418)
T ss_pred HHHHHHHHHcC----------c----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 66655554320 0 01123345556778888888888888899999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007827 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 566 (588)
Q Consensus 501 ~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~ 566 (588)
..+.+|..+++.+.|.+.+..+.... .+++..|.+.+++.++..++.+++.++.++
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 67889999999999999876421000 135678888888888888888888765533
No 65
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1e-19 Score=193.63 Aligned_cols=398 Identities=15% Similarity=0.119 Sum_probs=232.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHH
Q 007827 63 TTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142 (588)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (588)
+.+++++.+++++|+.+.|+++|| +|||+.+++..++..++.++..++... ....+++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~---------------------~~~e~li 120 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA---------------------PSFEMLI 120 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHH
Confidence 346888999999999999999999 699999999998888877777665432 4678899
Q ss_pred HHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH-Hhc-cccchhhHHHHHHHHH
Q 007827 143 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV-YVQ-SDVSWAWGLGIPAFMM 220 (588)
Q Consensus 143 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~-~~~-~~~g~~~~~~~~~~~~ 220 (588)
++|++.|+..|......+-++.|..|++. ||..-.....+.++|..++..++. .+. +...|++.+....+..
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999987422 223344455567777777755543 333 4456999888887766
Q ss_pred HHHHHHHHhc--cceeecc-CCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcc
Q 007827 221 FLSCAMFFLG--SRLYAKV-KPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 297 (588)
Q Consensus 221 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (588)
++.+++..+. .|++.-. +.+.+++.+ +.|+-+ .+++... ..+.......+
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~-------sl~~y~--G~~~~~~-~~e~~~~e~~~----------------- 247 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDEEEARK-------ALKFYR--GKEDVEA-EIEEMLREIEE----------------- 247 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCHHHHHH-------HHHHHh--CCCcchh-HHHHHHHHHHH-----------------
Confidence 6666554443 3443222 222222221 111111 1111100 00000000000
Q ss_pred cCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc--eeeeeccccccccCCcc--ccccch
Q 007827 298 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT--YVVFQALQSDRRVGNTH--FKIPAA 373 (588)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~--~~~~~~ 373 (588)
.+..+....++++..+++..++...+.. .....+|+.+ ...+|....-.+.|-+. -...+.
T Consensus 248 ------~~~~~~~~~sl~~~~~~~~lR~~~~i~~---------~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~ 312 (485)
T KOG0569|consen 248 ------EELEKKKQISLRQLLKNPTLRRPLLIGI---------VVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANL 312 (485)
T ss_pred ------hccccccCCcHHHHhcCcchhHHHHHHH---------HHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0000001111111111111112211111 1112233333 22222222222333000 001122
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 453 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (588)
..+.++.+..+++.. +.||+||| ..+..+..++.+..+++.......+..
T Consensus 313 ~~g~v~~~~t~~~~~--------lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~--------------- 362 (485)
T KOG0569|consen 313 GIGIVNLLSTLVSPF--------LIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSF--------------- 362 (485)
T ss_pred HHHHHHHHHHHHHHH--------HHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 223333333333333 47887887 556666666666555554433221111
Q ss_pred ccchHHH--HHHHHHHHHHH-HHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 007827 454 SSLSGLW--LIPQLSLIGFS-EAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL 530 (588)
Q Consensus 454 ~~~~~~~--~i~~~~l~~~~-~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~ 530 (588)
+ ++.+ .+.+.++..++ .....|..+-+.+|.+|++.|+.++++..+.+++++.+..+..+.+.+..|
T Consensus 363 -~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------- 432 (485)
T KOG0569|consen 363 -G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------- 432 (485)
T ss_pred -h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 0 2222 22333333333 345578889999999999999999999999999999999999999987652
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchhhhc
Q 007827 531 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAME 579 (588)
Q Consensus 531 ~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (588)
...|..+.+.++++.+..+...||+|+|..+|..++.+++
T Consensus 433 ---------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 433 ---------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred ---------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 1578889999999999999999999999987766665544
No 66
>PRK15075 citrate-proton symporter; Provisional
Probab=99.85 E-value=7.5e-19 Score=189.58 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=117.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHH-HHH-----HHHHHHhhhhhhhhhhccccchhHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLI-NIF-----SGTTNFATLLGAFLSDTYFGRYKTLGFAS 98 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~-~~~-----~~~~~~~~~~~G~lsDr~~Grr~~l~~~~ 98 (588)
....+.+..+++.+....+.... +.+.++++.++.+.+.+. +.. .++..+++++.|+++|| +||||.++.+.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~ 93 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA-TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHH
Confidence 34444556666666655555444 466788999887765433 222 22234678999999999 69999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccch
Q 007827 99 VASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGI 178 (588)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (588)
+++.++.+++.++.+.... .......++++|+++|++.+...+....+++|.+|+++ +
T Consensus 94 ~~~~~~~~l~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r 151 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATI----------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K 151 (434)
T ss_pred HHHHHHHHHHHhCCcHHHH----------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c
Confidence 9999998888876321000 00001256899999999999999988999999997422 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh--------ccccchhhHHHHHHH
Q 007827 179 TSFFNWYYFTFTFAMMISLTVIVYV--------QSDVSWAWGLGIPAF 218 (588)
Q Consensus 179 ~~~~~~~~~~~~~g~~i~~~i~~~~--------~~~~g~~~~~~~~~~ 218 (588)
+...++...+.++|..+++.+++.+ .+.+|||++|++...
T Consensus 152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 3456676667777777777766654 246899999987543
No 67
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.85 E-value=7.7e-19 Score=187.08 Aligned_cols=177 Identities=7% Similarity=-0.112 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....++...++..+.++++.|+++++|+|..+.+++.+.+.++..+++++.|+++|| +||||.++.+.+..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence 4445556677777777888899999999999999999999999999999999999999999 699999988766655443
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.........+. .+......+++++++.+++.+...+....+..|.-+ ++. ..++..
T Consensus 83 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~----~~~g~~ 138 (396)
T TIGR00882 83 APFFIYVFGPL----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR----NSN----FEYGKA 138 (396)
T ss_pred HHHHHHHhhhH----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh----hcc----cccchh
Confidence 32221100000 000123345667888888888888877776655321 111 235666
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
....++|.+++|.+++.+.+ .+|+..|++.+++.++..++.+
T Consensus 139 ~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 139 RMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred hhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 67789999999999998765 6999999987776655544433
No 68
>PRK10133 L-fucose transporter; Provisional
Probab=99.85 E-value=8.3e-19 Score=189.29 Aligned_cols=153 Identities=11% Similarity=0.028 Sum_probs=116.8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
......+.++.+...+........+|. +++++|.|..+.+++.+.+.++..+++++.|+++|| +||||++..+.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence 334445555555555665555555555 489999999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++..... ..++..++++|+++|+|.|...+..++++.|..++ .++ ....
T Consensus 103 ~~~~l~~~~~~---------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~---~~~---~~~~ 155 (438)
T PRK10133 103 LGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE---SSG---HFRL 155 (438)
T ss_pred HHHHHHHHHHh---------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh---hhH---HHHH
Confidence 98877532211 03678899999999999999999999998886432 111 1235
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQ 204 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~ 204 (588)
+.......+|..+++.+++.+.
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888876543
No 69
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.85 E-value=1e-18 Score=188.29 Aligned_cols=354 Identities=13% Similarity=0.114 Sum_probs=209.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccchh-HHHHHHHHHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYK-TLGFASVASFLGMLVLS 109 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~-~l~~~~~~~~i~~~~~~ 109 (588)
+..+..+..+..+++.|+++++|+|+.++|++.++..+...+..|+.|+++||. +|||| .++.+.+..+++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344455556678899999999999999999999999999999999999999972 47755 56667777777766665
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.....+ .......+++.+++.+++.+....+..++..|..++ +. + |+...++...+.
T Consensus 89 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~-~--R~~~~~~~~~~~ 145 (437)
T TIGR00792 89 TTPDFS------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PR-E--RESLSTFRRFGA 145 (437)
T ss_pred hCCCCC------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HH-H--HHHHHHHHHHHH
Confidence 542110 012356667778888888888877778888887653 11 1 235566666677
Q ss_pred HHHHHHHHHHHHHhc-------cccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCC-ChhhhHHHHHHHHHHhhccC
Q 007827 190 TFAMMISLTVIVYVQ-------SDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEG-SPLASTVQVFVAAIKKRHLK 261 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 261 (588)
++|..+++.+.+.+. +..+|++.+.+.+++.++..++.+...++.+++.+++ ++.....+
T Consensus 146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------------ 213 (437)
T TIGR00792 146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQ------------ 213 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHH------------
Confidence 777777666654443 2468999888877766555544443333321110000 00000000
Q ss_pred CCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh-HHHHHHH
Q 007827 262 LPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP-IWASAIV 340 (588)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 340 (588)
.+ +.....|.+...+. .++....
T Consensus 214 ---------------------------------------------------~~-----~~l~~~~~~~~~~~~~~~~~~~ 237 (437)
T TIGR00792 214 ---------------------------------------------------IF-----KALFKNDQLLILCLAYLFYNLA 237 (437)
T ss_pred ---------------------------------------------------HH-----HHHhCCHHHHHHHHHHHHHHHH
Confidence 00 00000111111111 1111111
Q ss_pred HHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHH
Q 007827 341 YYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420 (588)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l 420 (588)
.. .......++..+..... .....+.....++.+++.++..+ +.+|+++| +.+..+.++
T Consensus 238 ~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~ii~~~~~~~----l~~r~g~~-------~~~~~~~~~ 296 (437)
T TIGR00792 238 FN-IKNGVQVYYFTYVLGDP---------ELFSYMGSIAIVAGLIGVLLFPR----LVKKFGRK-------ILFAGGILL 296 (437)
T ss_pred HH-HHcchhheeEeeecCCh---------HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcH-------HHHHHHHHH
Confidence 11 11111112211111000 01112233334444555555433 47776654 456666666
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-------cchHH
Q 007827 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRS 493 (588)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-------~~~rg 493 (588)
.+++++...... .+.+..+...++.+++.+...+..++++.|..| ++.+|
T Consensus 297 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 297 MVLGYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 666655544321 133444556677788888888888888888765 66789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 007827 494 IGGSLAFVGFAISNYLNGFLISMVHRFTK 522 (588)
Q Consensus 494 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~~ 522 (588)
.++|+.++...++..+++.+.+.+.+..|
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999987764
No 70
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.85 E-value=8.1e-19 Score=185.21 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=130.0
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
.+.+.+|.+. +++|+|..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++...+...
T Consensus 9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~---------- 76 (377)
T PRK11102 9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALA---------- 76 (377)
T ss_pred HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3456677765 5799999999999999999999999999999999 699999999999888888877765
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.+.+++.|++.|++.+...+...+++.|.+++ +.++..+++.+....+|..++|.+++
T Consensus 77 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 77 --------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPK------EEFSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999988899999998863 22346688888899999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++.+..+|++.|++.++..++..++..
T Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 137 WLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 999889999999887766655544433
No 71
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=196.99 Aligned_cols=404 Identities=16% Similarity=0.130 Sum_probs=238.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHH
Q 007827 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 140 (588)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (588)
+.+++.+...++..++++++|+++|+ +|||++++++.+.+.+|.++++.+ .+..+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a------------------------~~~~~ 144 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALA------------------------PSWYQ 144 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHh------------------------hhHHH
Confidence 44899999999999999999999999 699999999999999999999998 46889
Q ss_pred HHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc-cchhhHHHHHHHH
Q 007827 141 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPAFM 219 (588)
Q Consensus 141 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~-~g~~~~~~~~~~~ 219 (588)
++++|++.|+|.|....+.+.+++|..|+ +.|+...+..+...++|..++..++....+. ++||..+++..+.
T Consensus 145 l~~GR~l~G~g~G~~~~~~piy~sEiap~------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~ 218 (513)
T KOG0254|consen 145 LIVGRILTGLGVGGASVLAPVYISEIAPA------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP 218 (513)
T ss_pred HHHHHHHhccchhhhhhcchhhHhhcCCh------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence 99999999999999999999999998863 3334667777778888888885554444332 5899888887766
Q ss_pred HHHHHHHHHhc--cceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcc
Q 007827 220 MFLSCAMFFLG--SRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 297 (588)
Q Consensus 220 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (588)
.++..+..++. .|++..+..+.++.+...+ .. +... +.+...+ +..+. .
T Consensus 219 ~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~---~l---~g~~-~~~~~~~-------------------~~~~~---~ 269 (513)
T KOG0254|consen 219 AVILALGMLFLPESPRWLIEKGRLEEAKRSLK---RL---RGLS-PEDVEVE-------------------LELLK---I 269 (513)
T ss_pred HHHHHHHHHhCCCChHHHHHcCChHHHHHHHH---HH---hCCC-CcchHHH-------------------HHHHH---H
Confidence 65555553332 2332222111111111111 11 1100 0000000 00000 0
Q ss_pred cCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc--eeeeeccccccccCCccc-cccchh
Q 007827 298 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT--YVVFQALQSDRRVGNTHF-KIPAAS 374 (588)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~ 374 (588)
....+ .+.+ .....|+.+.. + ..+|+.+.... . ..++|..+ ...+|....-...|...- ......
T Consensus 270 ~~~~~-~~~~-~~~~~~~~l~~-~-~~~~~~~i~~~-----l---~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~ 337 (513)
T KOG0254|consen 270 KLLVE-AEVA-EGKASWGELFS-P-KVRKRLIIGLL-----L---QLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASII 337 (513)
T ss_pred HHHHh-hhcc-cccccHHHhcC-c-chHHHHHHHHH-----H---HHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHH
Confidence 00000 0000 00001221111 0 11222211111 1 11122222 344444333333330000 111222
Q ss_pred hhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 007827 375 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 375 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
.+.++.++.++.. .+.||.||| ..+..|.+.+.+++++++.......+... ...
T Consensus 338 ~~~v~~~~t~~~~--------~lvd~~gRr-------~lll~s~~~m~~~~~~~~~~~~~~~~~~~-----------~~~ 391 (513)
T KOG0254|consen 338 LGVVNFLGTLVAT--------YLVDRFGRR-------KLLLFGAAGMSICLVILAVVGVFALYYPN-----------SSK 391 (513)
T ss_pred HHHHHHHHHHHHH--------HHHHHhccH-------HHHHHhHHHHHHHHHHHHHHHHHhccCCC-----------ccc
Confidence 2333333333332 347777777 67778888888888777765322111000 011
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 534 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 534 (588)
...+..+...++..........+..+.+..|.+|.+.|+++.++....+++.+.+-....+......
T Consensus 392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~------------- 458 (513)
T KOG0254|consen 392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL------------- 458 (513)
T ss_pred chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 2333444444555555556667777889999999999999999999999988888877777665432
Q ss_pred ccchhHHHHHHHHHHHHHHHH-HHHhhhccccccCCCCCCchhhh
Q 007827 535 NKGRLDYFYYLVAALGLLNFG-FFLLCAKWYKYKGSGDGAPEVAM 578 (588)
Q Consensus 535 ~~~~~~~~f~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 578 (588)
+....|..+++++.+... +++++.+|+|+++.|+.++...+
T Consensus 459 ---~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 459 ---GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred ---cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 113466777777777777 89999999999999876554443
No 72
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.85 E-value=1.8e-18 Score=188.90 Aligned_cols=380 Identities=13% Similarity=0.058 Sum_probs=238.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
...+.......+++.+....-++-++. ++.-|+...+++.....+-..+..+++|.++|| +.|||+++.+-++.++..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVA 89 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHH
Confidence 334445667777777666666665655 456789999999999999999999999999999 699999999988776655
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
..+.+..... ..+++.+++..++.|++.+...|+..+++.+++|+ +....+.++.
T Consensus 90 ~~L~~l~~~~-------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~------~~L~~A~al~ 144 (524)
T PF05977_consen 90 LLLAVLAFFG-------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK------EDLPAANALN 144 (524)
T ss_pred HHHHHHHHhC-------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------hhHHHHHHHH
Confidence 5444432211 13577888889999999999999999999999974 2234568888
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCC
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEE 265 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (588)
....|++..+||.++|.+...+|-.+.|.+.++..++.+..+...+++..+ ++.+.+...+.+..-+|
T Consensus 145 s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~r--------- 212 (524)
T PF05977_consen 145 SISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLR--------- 212 (524)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHH---------
Confidence 889999999999999999988899999998887766655544433332211 11111111111111000
Q ss_pred CccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 007827 266 PWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 345 (588)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (588)
.+.+.+.+...+ ....++....
T Consensus 213 -------------------------------------------------------yv~~~~~l~~~l---~~~~~~~l~~ 234 (524)
T PF05977_consen 213 -------------------------------------------------------YVRSSPPLRSVL---LRSFLFNLFA 234 (524)
T ss_pred -------------------------------------------------------HHhcchHHHHHH---HHHHHHHHhh
Confidence 000001111111 0011111111
Q ss_pred hcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHH
Q 007827 346 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTM 425 (588)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~ 425 (588)
......+ +.......+ .-....+.+.....++.++++.+.. ++.+| .+..+.+..+.++.++++
T Consensus 235 ~a~~aLl---Pl~a~~~l~--~~a~~yGll~a~~gvGai~Gal~~~--------~l~~~---~~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 235 SAVWALL---PLFARDVLG--GGASGYGLLLAAFGVGAILGALLLP--------RLRRR---LSSRRLVLLASLLFALAL 298 (524)
T ss_pred hHHHHhh---hHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHH--------Hhhcc---cCcchhhHHHHHHHHHHH
Confidence 0000111 111111111 0001112233334444445544422 22222 223355666666666666
Q ss_pred HHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHH
Q 007827 426 IISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAI 505 (588)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~i 505 (588)
+.++.. .+.+..++.+++.|++.....+...+.+++.+|+++||+++|++.+....
T Consensus 299 ~~lal~------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g 354 (524)
T PF05977_consen 299 LLLALS------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG 354 (524)
T ss_pred HHHhcc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH
Confidence 666653 35566667778888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 007827 506 SNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFL 558 (588)
Q Consensus 506 g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~ 558 (588)
+..+|..+.|.+.+.. +....+.+.++..+++.++.+
T Consensus 355 ~~~lGsll~G~la~~~----------------g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 355 GMPLGSLLWGFLADHF----------------GVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 344555555554444444433
No 73
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.84 E-value=2.6e-18 Score=182.59 Aligned_cols=166 Identities=14% Similarity=0.058 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
+...+....++......+|.+ .+++|.|..+.+++.+.+.++..+++++.|+++|| +|||+.++.+.++..++...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556554 56899999999999999999999999999999999 6999999999988888877776
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.. .+.+.++++|+++|++.+...+...+++.|.+++ +.++...+..+...
T Consensus 87 ~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~ 136 (392)
T PRK10473 87 LA------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD------RRRAKVLSLLNGIT 136 (392)
T ss_pred Hh------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHH
Confidence 65 2456788899999999999888889999998863 22346678888888
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++|..++|.+++.+.+..||++.|++.++..++..++.
T Consensus 137 ~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 137 CIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999988776655554443
No 74
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.84 E-value=2.2e-18 Score=184.17 Aligned_cols=179 Identities=13% Similarity=0.008 Sum_probs=123.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHH-hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTT-IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|.++...+ .+...+..+...+.+...+.+ ++|+|.+|.+++.+++.+.+.++.++.|++.|| +|.|+++.++.++..
T Consensus 34 r~l~~s~~-~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVS-CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 44443333 343344444444444455544 899999999999999999999999999999999 699999999999988
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+.++.+.++...+ ..++..+++.|++.|++ +...+.....++++||+ ++ ++.+.
T Consensus 112 i~~~~~~~a~~~~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~----~~--rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQNP-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK----AK--QGSAL 165 (462)
T ss_pred HHHHHHHHHHccc-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH----hH--hHHHH
Confidence 8888777652100 13578899999999998 66778888999999963 22 24567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc-----c-------------ccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQ-----S-------------DVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
++.....++|..+++.+.+.+. . ..+|+.+.++..+..++..++.++.
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776666777766655554322 2 2346666666666555555554443
No 75
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.84 E-value=6.4e-18 Score=185.00 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=131.5
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-----cchhH-HHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF-----GRYKT-LGF 96 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-----Grr~~-l~~ 96 (588)
+|+...++.+.+......+.....+|.+++ +.|.|.++.+... ...... ++.++.|+++|| + ||||. ++.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLA 86 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence 445666777777778887888888898976 4599999998863 232333 689999999999 8 99986 556
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
+.+..+++...+++... ..+++.+.+.+++.+++.+...+...++..|.+|++ +
T Consensus 87 ~~i~~~~~~~~~a~~~~---------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~----~- 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLEP---------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE----E- 140 (491)
T ss_pred HHHHHHHHHHHHHHcCC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh----h-
Confidence 66666666666655421 145777888899999999999999999999998632 1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHHHHH
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++.+.++...+..+|.++++.+++++.+ .+|||..|++.+++.++..+..+
T Consensus 141 -rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 -RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 2456777788889999999999999888 57999999998776655544433
No 76
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.2e-20 Score=191.12 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=153.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
..++.+..+.+.+.++...-|.+...+ .=.++.+|+++...|++.+++.+.+.++.|++|+|+||| .||+++.+|..+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence 334455566667777777777666544 345678999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
+.++.+...++ .+++++.++|.+.|+|.+.+.|.++++++|.|++++ |+.
T Consensus 108 W~~Av~~~~fs------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~ 157 (493)
T KOG1330|consen 108 WTLAVFASGFS------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSR 157 (493)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhH
Confidence 99998888887 478999999999999999999999999999998633 345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccce
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
.++++|++.++|..+|.+++.++....+ |||+|+..+++.++..++.++..++
T Consensus 158 ~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 158 VLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred HHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 6999999999999999999999988766 9999999998888777766655444
No 77
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.83 E-value=6.8e-18 Score=178.98 Aligned_cols=155 Identities=13% Similarity=-0.077 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch----hHHHHHHHHHHHHHHHH
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY----KTLGFASVASFLGMLVL 108 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr----~~l~~~~~~~~i~~~~~ 108 (588)
.++..+++..+.+++|.|++ ++|.|..+.|++.+.+.+...+++++.|.++|| +||| +.+.+...+. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH---HHHH
Confidence 44445556677788999985 689999999999999999999999999999999 6984 3322221111 1111
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.... .+.+.+++.|++.|++.+...|...++..+.. +++. ..++..+..
T Consensus 88 ~~~~-----------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~----~~~~----~a~~~~~~~ 136 (382)
T PRK11128 88 WFGA-----------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ----KQIG----LDYGKVRLW 136 (382)
T ss_pred HHhc-----------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH----hhcc----CCcchHHHH
Confidence 1111 35777888999999999998888777776642 1112 236666777
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
.++|.+++|.+++++.+++|||..|++.++..++.
T Consensus 137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 88999999999999999999999998766544433
No 78
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.83 E-value=4.4e-18 Score=205.23 Aligned_cols=154 Identities=8% Similarity=0.069 Sum_probs=116.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchh--hhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSIT--ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
....+++..++..+...+....+..++...++.+... .+++.+++.++..++++++|+++|| +|||++++++.++.+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~ 88 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEV 88 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHH
Confidence 3444445555555555555555666666666665443 6888999999999999999999999 699999998887766
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.++..+.... .+++.++++|+++|++.+...++..++++|.+++++ ++.++
T Consensus 89 ~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 141 (1146)
T PRK08633 89 GLTLLIVLAYYL---------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRAN 141 (1146)
T ss_pred HHHHHHHHHHHH---------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhh
Confidence 555544433210 357889999999999999999999999999997422 23568
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~ 206 (588)
+++..+.++|.++|+.+++++...
T Consensus 142 ~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 142 GLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999988765
No 79
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.83 E-value=2.2e-20 Score=197.29 Aligned_cols=365 Identities=34% Similarity=0.545 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC
Q 007827 92 KTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT 171 (588)
Q Consensus 92 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 171 (588)
|+++++.+++++|.+++.++...+.. ++..+...++++..+.++|.|+..|+..++++||+++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 78899999999999998777542211 122456789999999999999999999999999998653
Q ss_pred CCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeecc-CCCCChhhh-HHH
Q 007827 172 ESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV-KPEGSPLAS-TVQ 249 (588)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 249 (588)
++.+.++|+++|.+.|+|+.+++.+.+++.+++||.+.|.++.+.++++++++...++.+.++ ++.+++..+ ...
T Consensus 67 ---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~ 143 (372)
T PF00854_consen 67 ---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL 143 (372)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred ---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence 334458999999999999999999999999999999999999999999999988888887766 555555555 333
Q ss_pred HHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCcccc-chhhHHHHHHHH
Q 007827 250 VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRL-SSMQKVEEVKVL 328 (588)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 328 (588)
.+....+++....+....+..... .. .+...............+..+. ...|.. +..++++..+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~k~~ 210 (372)
T PF00854_consen 144 VLVAAFKKRKLAVPKGSSWLDWAL--FQ--YSERSIFGIIVFIRAAVIFFPE---------IFFWALFCQVQRVEELKAL 210 (372)
T ss_dssp HHHHHHHHHCCCH-HHHHHHHHHH--HH--HCCCCCCCCCCHHHHHHHHCCC---------HHHHTTTSSTTTHHHCCHH
T ss_pred HHHHHHHHhhcccccchHHHHHhh--hh--hhhhhhhhhhhhccchhhhhhh---------hhhcccCCccceeeeeeee
Confidence 333344444333321111000000 00 0000000000111111111110 111111 123445566677
Q ss_pred hhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCC
Q 007827 329 IRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGI 408 (588)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~ 408 (588)
.+.++.+...+.++..+.+...+...+....+...+ +.+.+++++++++|++.++++.|+.|++.+|+.+ ++...
T Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~----~~~~~ 285 (372)
T PF00854_consen 211 IRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR----RGIQP 285 (372)
T ss_dssp HCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTT----T----
T ss_pred eeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhh----hcccc
Confidence 777777777777777777766666666666665565 2388999999999999999999999999888877 22337
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC
Q 007827 409 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP 488 (588)
Q Consensus 409 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P 488 (588)
+...++.+|+++..+++++....+..+.......+ ..+.+|.+..+++..++|.+..+...+..+|.+|
T Consensus 286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~ 354 (372)
T PF00854_consen 286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-----------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAP 354 (372)
T ss_dssp --HHHHHHH-HHHHHHHHTTTHHHH---HH----T-----------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-----------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Confidence 88899999999999998888776654443333333 2344677799999999999999998886666666
Q ss_pred cchHHHHHHHHHHHH
Q 007827 489 ENMRSIGGSLAFVGF 503 (588)
Q Consensus 489 ~~~rg~~~~~~~~~~ 503 (588)
++..+..+|++....
T Consensus 355 ~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 355 SRAPSSMMGIWFALS 369 (372)
T ss_dssp TT-SSSSTHHHHHHH
T ss_pred HhhhHHHHHHHHHHh
Confidence 666666666655443
No 80
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.82 E-value=1.4e-18 Score=182.32 Aligned_cols=158 Identities=12% Similarity=0.055 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+...+..+......+...+.+|.++++++|+|..+.+++.+.+.++..+++++.|+++|| +|||+.++++.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 334445555556666677777778899999999999999999999999999999999999 6999999999999998888
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++.++. .+++.++++|+++|++.+.. +...++++|.+++++ ++...+++.
T Consensus 83 ~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~ 132 (366)
T TIGR00886 83 WAGLAV-----------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAA 132 (366)
T ss_pred HHHHHh-----------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHH
Confidence 877762 15778889999999996654 557788999886422 234577777
Q ss_pred HHHHHHHHHHHHHHHHhcc----------ccchhhHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQS----------DVSWAWGLGI 215 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~----------~~g~~~~~~~ 215 (588)
...++|..+++.+++.+.. ..+||+.|++
T Consensus 133 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 133 GWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 6677777777777665543 3489999843
No 81
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.2e-19 Score=184.15 Aligned_cols=417 Identities=15% Similarity=0.063 Sum_probs=226.5
Q ss_pred CCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCc-
Q 007827 57 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP- 135 (588)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (588)
.++...+.+..+..++..+++++.|+++|| +|||+++...+++..++++++.+.... +++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~------------------~~~~ 141 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGT------------------TSPL 141 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCC------------------CCCc
Confidence 567778899999999999999999999999 699999999999999988866654221 111
Q ss_pred hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc---------
Q 007827 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------- 206 (588)
Q Consensus 136 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~--------- 206 (588)
.-.++++..|+++|+|.|+-+|+..+..+|.....++ ...++..++....+.-.|++++.++..-....
T Consensus 142 ~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~R--Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ 219 (538)
T KOG0252|consen 142 GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTR--GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPH 219 (538)
T ss_pred chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccc--cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchH
Confidence 3467789999999999999999999999987654322 22334555666666666666665554433211
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHH-HHHHHHHHhhccCCCCCCccccccCCCcccccCCC
Q 007827 207 --VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV-QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKL 283 (588)
Q Consensus 207 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (588)
.=||..|.+.++..++.+. .-+..|+. +....+. +-...+.. ..+++.+... + +++ ..+
T Consensus 220 ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et-------~~Y~al~~~~~~~a~~--d~~k~~~~~~---~-~~~--~~~-- 281 (538)
T KOG0252|consen 220 LDGVWRIIFGLGAVPALLVLY-FRLKMPET-------ARYTALVSKKLKQAAG--DMKKVLSVDI---E-AES--TAE-- 281 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhcCCcc-------hhHHHHhhcCHhhhhh--cccccccccc---c-hhh--ccc--
Confidence 1288877766553322211 11111111 0111000 00000110 0111100000 0 000 000
Q ss_pred CCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeecccccccc
Q 007827 284 PHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRV 363 (588)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (588)
+....+.+..+++.+.. ..+ ....++......++.-..++..-.++....+ .+
T Consensus 282 ---------------------~~~~~~~~~~~~F~~~f-~~~----hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~i 334 (538)
T KOG0252|consen 282 ---------------------SDVPPPSNSFGLFSRLF-LRW----HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AI 334 (538)
T ss_pred ---------------------cCCCCcccccchHHHHH-HHH----HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hh
Confidence 00011112222222111 111 1111112222222222222222222222211 01
Q ss_pred CC-ccccccch--hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 364 GN-THFKIPAA--SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL 440 (588)
Q Consensus 364 g~-~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 440 (588)
|- |.-..... .....|.+...+.....-++...+.|++||| ..-..|++++++.++.++...
T Consensus 335 g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-------~iq~~GF~~~~i~~~~~~~~y-------- 399 (538)
T KOG0252|consen 335 GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-------YIQLMGFFIMTIFFFVIAGPY-------- 399 (538)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-------HHHHhhHHHHHHHHHHHcCCc--------
Confidence 10 00000000 0111222222222222223344568888877 677788888888877776431
Q ss_pred cCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 441 SRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
|+ .. ......+.-.+...+++..-..++..+.+|.+|.+.||+.-|+...+.-+|++++......+.+.
T Consensus 400 ------~~----~~-~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~ 468 (538)
T KOG0252|consen 400 ------NQ----LE-NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH 468 (538)
T ss_pred ------cc----cc-ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc
Confidence 11 01 11111222223333455566666788899999999999999999999999999999999887652
Q ss_pred ccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchhh
Q 007827 521 TKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVA 577 (588)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (588)
. +. ...+..+.+++++++++++.++++++- |+|+|++|+.+++.+
T Consensus 469 ~-------yp----~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~~e~~ 513 (538)
T KOG0252|consen 469 N-------YP----PNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEISNEEE 513 (538)
T ss_pred c-------CC----ccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhcChhh
Confidence 1 11 112567899999999999977766665 999999987755533
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.82 E-value=8.6e-18 Score=202.50 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH--HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchh
Q 007827 60 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA--SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 137 (588)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (588)
...++..+++.+.+.++++++|+++|| +|||+++.....+ .+....+..+.. .+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~-----------------------~s 107 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL-----------------------NS 107 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hh
Confidence 345777888999999999999999999 6999976432221 111111222211 35
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Q 007827 138 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 217 (588)
Q Consensus 138 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~ 217 (588)
++.++++|+++|++.+.+.|+..+++.|++++++ ++.++++...+.++|.++||.+++++....+|++.|...+
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~ 181 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM 181 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7889999999999999999999999999997522 2356889999999999999999999999999999985444
Q ss_pred HHHHHHHH
Q 007827 218 FMMFLSCA 225 (588)
Q Consensus 218 ~~~~~~~~ 225 (588)
+..+++++
T Consensus 182 ~~~~~~~~ 189 (1140)
T PRK06814 182 GIAVLGWL 189 (1140)
T ss_pred HHHHHHHH
Confidence 44443333
No 83
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5.1e-18 Score=173.74 Aligned_cols=392 Identities=11% Similarity=0.031 Sum_probs=251.0
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
+.+.|.++... ..+..++..+...+.+.+++++++|+|+.|.+++..+..+.+.+..++.|++.|| ||.|+....+.+
T Consensus 10 ~~~~~~L~~S~-~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLST-LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence 34455555433 3344455556667778888899999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+..+-.+...++... .+++.+++.+.+.|++.+.+.. ..+.++..||++ ++ +
T Consensus 88 l~~IP~~~~~~a~~~---------------------~~~~~ll~~gll~G~~GasFav-~m~~~s~~fP~~----~q--G 139 (417)
T COG2223 88 LLLIPCLGLAFAVTY---------------------PSTWQLLVIGLLLGLAGASFAV-GMPNASFFFPKE----KQ--G 139 (417)
T ss_pred HHHHHHHHHHHHccC---------------------CchHHHHHHHHHHhcccceehc-ccccccccCChh----hh--h
Confidence 988888888887542 2347888999999998877654 778889999742 22 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIK 256 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (588)
.+.+++. ..|+|..+...+++.+....+ |+....+..+..++..++.++..++.+..++..++... ..+
T Consensus 140 ~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~----- 211 (417)
T COG2223 140 LALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQL----- 211 (417)
T ss_pred HHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHH-----
Confidence 6788877 899999999999999988888 99888888887777777766655553332221111100 000
Q ss_pred hhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHH
Q 007827 257 KRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWA 336 (588)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (588)
+.+...+....+..++.
T Consensus 212 ---------------------------------------------------------------~~v~~~~~~W~lsllY~ 228 (417)
T COG2223 212 ---------------------------------------------------------------KAVFSNKDTWLLSLLYF 228 (417)
T ss_pred ---------------------------------------------------------------HHHhcCcchHHHHHHHH
Confidence 00111111111211222
Q ss_pred HHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHH
Q 007827 337 SAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~ 416 (588)
..+.-+..+. ...+.+...+.| -.....+.+....++.-.+.-|+.+++ .||+|.+ +....
T Consensus 229 ~tFG~Fvgfs------~~l~~~~~~~fg--~~~~~Ag~~a~~f~~~g~l~Rp~GG~L----sDR~Gg~-------rv~~~ 289 (417)
T COG2223 229 ATFGGFVGFS------AYLPMYLVTQFG--LSPVTAGLIAFLFPLIGALARPLGGWL----SDRIGGR-------RVTLA 289 (417)
T ss_pred HHHHHHHHHH------HHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHHHhccchh----hhhccch-------hHHHH
Confidence 2221122111 111112222232 000112233344444444555554444 7887765 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHH
Q 007827 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496 (588)
Q Consensus 417 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~ 496 (588)
.+..++++....+...+ ..+ ...+....+..++..++..+...-..+.++...+|+ +-|.+.
T Consensus 290 ~f~~~~~~~~~l~~~~~-------~~~----------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~ 351 (417)
T COG2223 290 VFVGMALAAALLSLFLT-------GFG----------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVT 351 (417)
T ss_pred HHHHHHHHHHHHHcccc-------ccc----------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHH
Confidence 56666666655554311 000 123444445555555566666666667677666666 577888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 497 SLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 497 ~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
|+.....++|+..-|...+...+.+ +.+...|+++..+.+++.++++....+.
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888899888888888888765 2466789999999999988888776544
No 84
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.7e-18 Score=185.94 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=134.2
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 53 TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 53 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
.+++++..+-+++.+.+..|+.+++.++|+++|| +|-|+++..+.++.++.+++..++..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~------------------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS------------------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3689999999999999999999999999999999 69999999999999999999888764
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc-cchhh
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAW 211 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~-~g~~~ 211 (588)
.+.+.+++.|+++|++.|...|+...+.+.+.|++ + ++...++.+.+..+|.+++..++|++.+. +||++
T Consensus 126 ---~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~---E---rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 126 ---IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN---E---RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred ---hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH---H---HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 34557899999999999999999999999999842 2 24568888888999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHhccceeec
Q 007827 212 GLGIPAFMMFLSCAMFFLGSRLYAK 236 (588)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
+|++.++..++..+++++...+.+.
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999888877776666655554333
No 85
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.81 E-value=5.8e-18 Score=178.62 Aligned_cols=164 Identities=12% Similarity=0.133 Sum_probs=110.7
Q ss_pred HHHhhhhhhhHHHHHHHhcC--CCchhhhHHHHH-----HHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 37 KLGTTGTSSNLLVYLTTIFN--MKSITATTLINI-----FSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 37 ~~~~~~~~~~l~~yl~~~~g--~s~~~~~~~~~~-----~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
.+..+.+. .+..++.+++. .++++.+.+.+. ..++..+++++.|+++|| +||||++..+.++..++.+++.
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 6 WFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHh
Confidence 34443433 34445555543 445555554433 223334688999999999 6999999999999988888877
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
++.+.+.. .......++++|+++|++.+...+...+++.|.+++++ ++...+..+.+.
T Consensus 84 ~~~~~~~~----------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~ 141 (394)
T TIGR00883 84 LLPSYATI----------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGA 141 (394)
T ss_pred hCCChhhh----------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHH
Confidence 76321100 00112457899999999999999999999999886421 235577777788
Q ss_pred HHHHHHHHHHHHHhc--------cccchhhHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~~~~~ 224 (588)
.+|..+++.++..+. +.++||+.|.+..+..+++.
T Consensus 142 ~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 142 PVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 888888888766543 35789999987766554443
No 86
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.80 E-value=4.1e-17 Score=174.57 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=123.3
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
++...+.+.+++++|+|..+.|++.+.+.+++.++.++.|++.|| +|||+++..+.++++++..++..+..
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 444444456688999999999999999999999999999999999 69999999999999988877544321
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
..+++.+++.|++.|+|.|...+..++++.+..++++ ++...+..+...++|..++|.+++
T Consensus 91 -------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 91 -------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred -------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1357788999999999999999999999888775422 223477778888999999999988
Q ss_pred Hhccc--------------------------cchhhHHHHHHHHHHHHH
Q 007827 202 YVQSD--------------------------VSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 202 ~~~~~--------------------------~g~~~~~~~~~~~~~~~~ 224 (588)
.+... .+||++|.+.++..++..
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76422 369999987766554443
No 87
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.80 E-value=1.7e-16 Score=169.44 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-----cchh-HHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF-----GRYK-TLGFASVASFL 103 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-----Grr~-~l~~~~~~~~i 103 (588)
+.+.+.+.+.+.....-+|.|+++ .|+|.++.|++...... .+..++.|+++|| + |||| .++++.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence 445566666666677889999975 59999999999776665 5999999999999 7 8876 57777777766
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+...+.+... ..+.+.+++..++.++..+...+...+++.|.+|++ + ++.+.+
T Consensus 81 ~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~----~--r~~~~~ 133 (402)
T PRK11902 81 SIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE----E--RGAGAA 133 (402)
T ss_pred HHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh----h--hhHHHH
Confidence 6666555421 134666677777778888888899999999998642 1 234577
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHH
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~ 225 (588)
+...+.++|..+++.+++++.+. +|||..|++.++..++..+
T Consensus 134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 77778889999999998888875 5999999987776555444
No 88
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.79 E-value=2.4e-17 Score=172.85 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=115.3
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
+.+.+| .+.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++.++.++.+++.+.+ ..
T Consensus 19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~----------- 84 (355)
T TIGR00896 19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA----------- 84 (355)
T ss_pred CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence 344454 4567999999999999999999999999999999999 699999999888877766555 32
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
.+.+.+++.|++.|++.+...+....++.|.+++ .++...+.++...++|..+++.+++.
T Consensus 85 -------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~ 144 (355)
T TIGR00896 85 -------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVP 144 (355)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466788999999999998887777787777641 12456888888889999999999888
Q ss_pred hcccc--chhhHHHHHHHHHH
Q 007827 203 VQSDV--SWAWGLGIPAFMMF 221 (588)
Q Consensus 203 ~~~~~--g~~~~~~~~~~~~~ 221 (588)
+.+.. +||+.|.+.++..+
T Consensus 145 l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 145 LAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHhhhhhHHHHHHHHHHHHH
Confidence 87654 38988876555433
No 89
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.79 E-value=1.3e-16 Score=173.97 Aligned_cols=171 Identities=8% Similarity=0.016 Sum_probs=112.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhh----ccccch-hHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSD----TYFGRY-KTLGFASVASFLGML 106 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grr-~~l~~~~~~~~i~~~ 106 (588)
..+..++.+..+..+++.|+++.+|+++..+|.+..+.-+.-.+..|+.|+++| | +||| +.++++.+..+++..
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHH
Confidence 445556666677788999999999999999999999999999999999999999 6 5995 455566666666655
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++...... +.......+++...+..++......+..++.+|+.++. .+ |+...++-.
T Consensus 93 llf~~p~~------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~--~e---R~~l~~~~~ 149 (473)
T PRK10429 93 LLFSAHLF------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK--RE---REQLVPYPR 149 (473)
T ss_pred HHHcCCCC------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH--HH---HHHHHHHHH
Confidence 55432110 00123455566666778888888888888888877542 22 234555555
Q ss_pred HHHHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQS-------DVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~-------~~g~~~~~~~~~~~~~~~~~~ 226 (588)
...++|+.+.+.+...+.. ..+|+....+.+++.++..++
T Consensus 150 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 150 FFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 6667776665554443221 124555555554444443333
No 90
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.78 E-value=1.5e-16 Score=166.79 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=111.0
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc----ccchhHH-HHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY----FGRYKTL-GFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~----~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
.+|.+ .+++|+|.++.++.... .+...+ .++.|+++||+ +||||.+ +.+.++.++....+.+...
T Consensus 10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------- 79 (356)
T TIGR00901 10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------- 79 (356)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-------
Confidence 44545 56789999999998655 344444 99999999993 2899975 4555556555555544321
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
..+.+.+....++.+++.+...+...+++.|.+|++ .|+.+.++...+.++|.++++.++
T Consensus 80 --------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~ 139 (356)
T TIGR00901 80 --------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLA 139 (356)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHH
Confidence 134556666777778888888888899999999642 123567788888999999999999
Q ss_pred HHhccccc--------hhhHHHHHHHHHHHHHHHHH
Q 007827 201 VYVQSDVS--------WAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 201 ~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~ 228 (588)
+.+.+..+ ||..|++.++..++.+++.+
T Consensus 140 ~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 140 LVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 98888877 99999988876666554444
No 91
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.77 E-value=4.3e-16 Score=167.64 Aligned_cols=441 Identities=10% Similarity=0.048 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhc---cccchhHHHHH-HHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDT---YFGRYKTLGFA-SVASFLG 104 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr---~~Grr~~l~~~-~~~~~i~ 104 (588)
+-...+.-++++....++++.|+ +++|.+....+.+..+..+...+.+|+.|+++|| ++||||.++.+ .+...++
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 33444455666666677788776 5799999999999999999999999999999993 26999998875 4445555
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
.+++..+.++.... -++- +...........+++..+..++.....++..++++|+.|++++++ ..++++
T Consensus 88 l~ll~~~~~~~~~~---~~~~----~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~----~~a~~~ 156 (477)
T TIGR01301 88 VILIGFAADIGHLF---GDNL----DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRT----RIANAY 156 (477)
T ss_pred HHHHHhCchhhhhc---cccc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHH----HHHHHH
Confidence 55555543211000 0000 000001112344555556667888788888999999998633222 246888
Q ss_pred HHHHHHHHHHHHHHHHHHh--ccc-------------cchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHH
Q 007827 185 YYFTFTFAMMISLTVIVYV--QSD-------------VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQ 249 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~--~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
.....++|+.+|+.++++. .+. .+.+..|++.++..+++.++..+..+|.+..++++ ..++
T Consensus 157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~-~~~~--- 232 (477)
T TIGR01301 157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD-FINS--- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc-chhh---
Confidence 8889999999999998864 221 15788999888877777666655544432111100 0000
Q ss_pred HHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHh
Q 007827 250 VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI 329 (588)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (588)
. .+ +.++. ...+.+. ..|+.+.+- =|.+.
T Consensus 233 ---------~-----------~~--~~~~~----~~~~~~~---------------------~i~~~~~~m----P~~m~ 261 (477)
T TIGR01301 233 ---------E-----------AA--PPSKH----GEEAFFG---------------------ELFGAFKYL----PRPVW 261 (477)
T ss_pred ---------h-----------cc--ccccc----chhhhHH---------------------HHHHHHHHC----CHHHH
Confidence 0 00 00000 0000000 001000000 01122
Q ss_pred hhhhHHHHHHHHHHHHhcccc-eeeeeccccccccCCcccccc---chhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCC
Q 007827 330 RVIPIWASAIVYYVALVQQQT-YVVFQALQSDRRVGNTHFKIP---AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 405 (588)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~ 405 (588)
+.+.+.++...-|..+..+.+ ++-...-..+.... ..++.. ..+....+.+...+...+ +-++.+|.++|+
T Consensus 262 ~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~-~~y~~gvr~G~~~l~~~s~~~~i~s~~----l~~l~~~~g~~k 336 (477)
T TIGR01301 262 ILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG-AKYDDGVRAGAFGLMLNSVVLGITSIG----MEKLCRGWGAGK 336 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccch
Confidence 223333333333333333333 11100000000000 001111 122233344443333333 333467766431
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch-HHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 007827 406 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS-GLWLIPQLSLIGFSEAFTIIAEVEFYY 484 (588)
Q Consensus 406 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~ 484 (588)
....++.++.++++....+.....++....+++. +.. +.+.. .+..+..+.+.|+........-+++++
T Consensus 337 ------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~--~~~--~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s 406 (477)
T TIGR01301 337 ------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDG--ESL--PPPTGIKASALIVFAILGIPLAITYSIPFALAS 406 (477)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccc--ccc--CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 3446777777777777665432111100111100 000 01111 355666788889988888888899999
Q ss_pred ccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 485 KQFPE--NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 485 ~~~P~--~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
+..|+ +..|..+|+.|+.-.+...+.....|.+.+..++ +..+++.+.++..+++.+..+...|
T Consensus 407 ~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 407 IRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred HHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 99995 4559999999999999999999888876555431 2345777888888888888888777
Q ss_pred ccc
Q 007827 563 WYK 565 (588)
Q Consensus 563 ~~~ 565 (588)
+.+
T Consensus 473 ~~~ 475 (477)
T TIGR01301 473 RPR 475 (477)
T ss_pred CCC
Confidence 654
No 92
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.76 E-value=1e-15 Score=162.49 Aligned_cols=382 Identities=11% Similarity=0.067 Sum_probs=213.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
...++..+.+....++++.|++ +.|+|..|.|.+.++..+...+.+++.|+++||+..+||.+.+..++.++..+....
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555567788999997 578999999999999999999999999999999523566666655555554434333
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
. .+++.++...++..+......|...++..+...+ ++.+ |+-....++
T Consensus 88 ~------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~------YG~iRlwGS 135 (400)
T PF03825_consen 88 S------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKD------YGRIRLWGS 135 (400)
T ss_pred h------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCC------CCcchhhhh
Confidence 2 2455566667777888888888888887776642 2222 666666777
Q ss_pred HHHHHHHHH-HHHhccccc---hhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhh-hHHHHHHHHHHhhccCCCCC
Q 007827 191 FAMMISLTV-IVYVQSDVS---WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLA-STVQVFVAAIKKRHLKLPEE 265 (588)
Q Consensus 191 ~g~~i~~~i-~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 265 (588)
+|.+++... ++.+....+ ..+.+++.+...++.... .+..|+.+.++..+++.+ ...
T Consensus 136 iGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~~~~~----------------- 197 (400)
T PF03825_consen 136 IGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVKKLLG----------------- 197 (400)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCcccccc-----------------
Confidence 777776443 223332222 234445544433222221 222232221000000000 000
Q ss_pred CccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 007827 266 PWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 345 (588)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (588)
.+.|+++ ++++.....+..++.+...- .+
T Consensus 198 ---------------------------------------------~~~~~ll-----k~~~~~~Fll~~~l~~~~~~-~~ 226 (400)
T PF03825_consen 198 ---------------------------------------------LDALKLL-----KNPRFLVFLLAAFLIGISHA-AY 226 (400)
T ss_pred ---------------------------------------------hHHHHHh-----cCccHHHHHHHHHHHHHHHH-HH
Confidence 0000000 01111111111111222111 11
Q ss_pred hcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHH
Q 007827 346 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTM 425 (588)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~ 425 (588)
+.+...+....+.. .....+....++. +.|.......+|+-+| .+..+.+.++.+..++=.
T Consensus 227 ~~f~~~yl~~~gg~-----------~~~~~g~~~~l~~-----~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 227 YTFFSIYLQELGGY-----------SGSTIGILWALGV-----VAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHcccc-----------hhhHHHHHHHHHH-----HHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 11112111111100 0111111111111 1222222234444444 445577878887777777
Q ss_pred HHHHHHHHHHhhhhccCCCcccccCCccccchHH---HHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHH
Q 007827 426 IISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL---WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVG 502 (588)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~ 502 (588)
.+.+... +..+. ..++..++.|+..++.......|+.+.+|++.|++++++++..
T Consensus 288 ~l~a~~~----------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~ 345 (400)
T PF03825_consen 288 LLYAYFS----------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL 345 (400)
T ss_pred HHHHHhc----------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 6666541 11111 2233346789999999999999999999999999999998664
Q ss_pred -HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 503 -FAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 503 -~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
.++|..+|+.+.|.+.+..+..+.. .+..++.+.+++.++..+.++++.|+.+
T Consensus 346 ~~Glg~~iG~~igG~l~~~~g~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 346 SFGLGGAIGSLIGGWLYDAFGARGMF----------DWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HhhHHHHHHHHHHHHHHHHhcchhhh----------hHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 7899999999999999876433221 2335667777777777777777776543
No 93
>PRK09848 glucuronide transporter; Provisional
Probab=99.76 E-value=4.7e-16 Score=168.52 Aligned_cols=148 Identities=9% Similarity=0.090 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc----cchhHH-HHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF----GRYKTL-GFASVASFLGML 106 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~----Grr~~l-~~~~~~~~i~~~ 106 (588)
..+..+..+..+..+++.|+++.+|+++.++|.+.....+...+..|+.|+++|| . ||||.+ +++.+...+...
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDS-VNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeec-CCCCCcCchHHHHHHHHHHHHHHH
Confidence 3445556666667788889999999999999999999999999999999999999 5 677654 455554444333
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++..... . ..........+....+.+++.+...++..++..++..+.+ ++ ....++-.
T Consensus 95 ~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~r---~~~~~~r~ 152 (448)
T PRK09848 95 LVFWVPT--D---------------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--SR---ARLGAARG 152 (448)
T ss_pred HHHhCcC--C---------------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--HH---HHHHHHHH
Confidence 3322110 0 0001233444555667788888888877787777665422 22 12222222
Q ss_pred H-----HHHHHHHHHHHHHHH
Q 007827 187 F-----TFTFAMMISLTVIVY 202 (588)
Q Consensus 187 ~-----~~~~g~~i~~~i~~~ 202 (588)
. ..+++..++|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 153 IAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 2 234556666666654
No 94
>PRK09669 putative symporter YagG; Provisional
Probab=99.74 E-value=2.1e-15 Score=163.32 Aligned_cols=172 Identities=12% Similarity=0.075 Sum_probs=113.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccch-hHHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRY-KTLGFASVASFLGMLV 107 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr-~~l~~~~~~~~i~~~~ 107 (588)
..+..+..+..+..+++.|+++.+|+|+.++|.+..+.-+...+..|+.|+++||. +||| +.++.+.+...+...+
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 33444555566678899999999999999999999999999999999999999992 3775 4455666666665544
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH
Q 007827 108 LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF 187 (588)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (588)
+...+. . ........+++...+.+++..+...+..++.+|+.++. .+ |++..++...
T Consensus 97 ~f~~p~---~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~--~e---R~~l~~~r~~ 153 (444)
T PRK09669 97 TFYTPD---F---------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP--RE---RHSLQSWRFA 153 (444)
T ss_pred HHhCCC---C---------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH--HH---HHHHHHHHHH
Confidence 433311 0 00134555666666777777777777788888877542 22 2345566666
Q ss_pred HHHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHH
Q 007827 188 TFTFAMMISLTVIVYVQS-------DVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~-------~~g~~~~~~~~~~~~~~~~~~ 226 (588)
+.++|..+++.+...+.. ..+|+..+.+.+++.++..++
T Consensus 154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 777777777654433222 246777666665554444333
No 95
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.4e-15 Score=153.19 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=119.2
Q ss_pred hhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 41 TGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 41 ~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
...+..+.+.+++.++++..+++++...+..++.++.++.|++.+| +|+|+.++.++.++++|..+..=++.
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~------- 100 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS------- 100 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence 4445566677789999999999999999999999999999999999 69999999999999999887764432
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
..++..++.+.++.+.|.+...+..++++..+.++++..+| .+..+..+.+|+.++|.++
T Consensus 101 --------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~r------lnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 101 --------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFR------LNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred --------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHH------HHHHHHhhhhHHHHHHHHH
Confidence 25678899999999999999999999999999986555555 7888888999999999999
Q ss_pred HHhcc
Q 007827 201 VYVQS 205 (588)
Q Consensus 201 ~~~~~ 205 (588)
+++..
T Consensus 161 ~~lil 165 (422)
T COG0738 161 SSLIL 165 (422)
T ss_pred HHHHH
Confidence 98776
No 96
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.74 E-value=2.5e-15 Score=166.03 Aligned_cols=390 Identities=15% Similarity=0.039 Sum_probs=223.5
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 53 TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 53 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
+.+..+.....+..+++.++..+|.++.|+++|| +|||+++++++++..++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5667788888999999999999999999999999 799999999999999988888887
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG 212 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~ 212 (588)
.+++.+++.|++.|++.++.......+++|.++++ . |+.+.++ ......++.+++.+++++.. +||+.
T Consensus 169 ---~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~---~---R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 169 ---PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK---Q---RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred ---CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc---h---hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 46889999999999999999999999999999742 2 2234445 55666778888888888887 89999
Q ss_pred HHHHHHHHHHHHHHHHh--ccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccc
Q 007827 213 LGIPAFMMFLSCAMFFL--GSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFR 290 (588)
Q Consensus 213 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (588)
+++..+..++.+++.++ ..+++...+.+. ++..+.+....+..+.+.. ..... +
T Consensus 237 ~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~---~~a~~~l~~~a~~n~~~~~--~~~~~-------------------~ 292 (521)
T KOG0255|consen 237 FWIISIPSGLFLLLWFLPPESPRWLLSKGRI---DEAIKILKKIAKLNGRKLS--VKELL-------------------R 292 (521)
T ss_pred HHHHHHHHHHHHHHHHccCcChHHHHHcCch---HHHHHHHHHHHhhcCCCCC--cHHHH-------------------H
Confidence 99877766665555222 233333333222 2333333333332211000 00000 0
Q ss_pred hhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHH-HHHHHHHHHHhcccceeeeeccccccccCCcccc
Q 007827 291 CLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIW-ASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK 369 (588)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (588)
... ...+. +.....+...+.++...+.. ++.+......+ ....+++... ... ..+|
T Consensus 293 ~~~---~~~~~--~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~~~~~~~~y~gl~--------~~~----~~lg----- 349 (521)
T KOG0255|consen 293 LEL---LLRPL--KLLFTEPKISFLDLFRTPRL-RYRTLYLLFIWFVFSLVYYGLS--------LNV----SGLG----- 349 (521)
T ss_pred HHH---HhhHh--hhhccCCCCchhhhhcCHHH-HHHHHHHHHHHHHHhHHHHhhh--------hhh----hhcC-----
Confidence 000 00000 00000000111111111111 22221111111 1111111111 000 0111
Q ss_pred ccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccccc
Q 007827 370 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQR 449 (588)
Q Consensus 370 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (588)
.................... .....++.||| .....+.++..+++++.++...
T Consensus 350 ~~~~~~~~~~~~~~~p~~~~----~~~~~~~~gR~-------~~~~~~~~~~~~~~~~~~~~~~---------------- 402 (521)
T KOG0255|consen 350 GNIYLNFTLSGLVELPAYFR----NGLLLPEFGRR-------PPLFLSLFLAGIGLLLFGWLPD---------------- 402 (521)
T ss_pred chHHHHHHHHHHHHhhHHHH----HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHhhc----------------
Confidence 11111111111111111111 12245665554 6677777888888887777531
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 007827 450 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW 529 (588)
Q Consensus 450 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~ 529 (588)
....+.......+...+........+.+..|..|+..|..+.+...+...+++++++.+........
T Consensus 403 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~-------- 469 (521)
T KOG0255|consen 403 -----DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF-------- 469 (521)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Confidence 1121112222233333444444455889999999999999999999999999999998775442210
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007827 530 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 572 (588)
Q Consensus 530 ~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
+ . ..+..++....+.+.+..++.+|++++.+.+.
T Consensus 470 -~------~--~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 470 -P------L--LGLILFGWLALLLGLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred -c------c--chHHHHHHHHHHHHHHHHhcCcccCCCCCchh
Confidence 0 1 11222566777777777788899988877443
No 97
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.73 E-value=2.8e-21 Score=209.23 Aligned_cols=397 Identities=16% Similarity=0.160 Sum_probs=219.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHH
Q 007827 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 140 (588)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (588)
..++..+...++..++++++|+++|| +|||++++.+.++..++.++..++.. ..+++.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~ 104 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS---------------------YNNFWM 104 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc---------------------cccccc
Confidence 46788999999999999999999999 69999999999999999888887631 025778
Q ss_pred HHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc---ccchhhHHHHHH
Q 007827 141 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---DVSWAWGLGIPA 217 (588)
Q Consensus 141 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~---~~g~~~~~~~~~ 217 (588)
+.++|++.|++.|...+....++.|..|+++ | +...++......+|..++..++..+.. ..+||+.+.+..
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~---R---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 178 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH---R---GFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA 178 (451)
T ss_pred ccccccccccccccccccccccccccccccc---c---cccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999887422 2 234556666677787777666544332 245999988877
Q ss_pred HHHHHHHHHHH--hccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhh
Q 007827 218 FMMFLSCAMFF--LGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 295 (588)
Q Consensus 218 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (588)
+..++.++... ...|++...+.+.+++.+..+ + .+.++....+. ++..
T Consensus 179 ~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~-------~--~~~~~~~~~~~----------~~~~----------- 228 (451)
T PF00083_consen 179 IPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLR-------K--LRGKEIEDEEI----------EEIK----------- 228 (451)
T ss_pred cccccccccccccccccceecccccccccccccc-------c--ccccccccccc----------cccc-----------
Confidence 65544433322 233554433333333221111 0 00000000000 0000
Q ss_pred cccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhh
Q 007827 296 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 375 (588)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 375 (588)
.+ .++.......|+.+.+++. .++++...+.+...+.. . .......+........|...........
T Consensus 229 ---~~---~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~-----~-g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 295 (451)
T PF00083_consen 229 ---AE---KKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQF-----S-GINFIFYYSPSIFENAGISNSFLATLIL 295 (451)
T ss_pred ---cc---cccccccceeeeecccccc-ccccccccccccccccc-----c-cccccccccccccccccccccccccccc
Confidence 00 0000000022332222111 11222111111111100 0 0001111111111112100000011111
Q ss_pred hhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCcccccCCccc
Q 007827 376 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISG-IIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 376 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
...+.++.++ ...+.||+||| +.+..+.++++++++.++ ..... .. ...
T Consensus 296 ~~~~~~~~~~--------~~~~~~~~GRr-------~~~i~~~~~~~~~~~~~~~~~~~~-------~~--------~~~ 345 (451)
T PF00083_consen 296 GLVNFLGTLL--------AIFLIDRFGRR-------KLLIIGLLLMAICSLILGIIFFLG-------VS--------SSS 345 (451)
T ss_pred cccccccccc--------ccccccccccc-------cccccccccccccccccccccccc-------cc--------ccc
Confidence 1112222222 22358888887 345566666655555443 11000 00 000
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 534 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 534 (588)
..+...++...+..........+..+.+..|.+|++.|+++.++....+.+++.+++.+.+.+.+..+
T Consensus 346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------ 413 (451)
T PF00083_consen 346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------ 413 (451)
T ss_pred ccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------
Confidence 01222222222222233345567778899999999999999999999999999999988887764321
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCc
Q 007827 535 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 574 (588)
Q Consensus 535 ~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (588)
....|.++++++++..++.+++.||+|+++.||.++
T Consensus 414 ----~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 414 ----GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred ----ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 124677788888888888999999999999987654
No 98
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.72 E-value=9.2e-15 Score=155.38 Aligned_cols=176 Identities=9% Similarity=-0.093 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHH--HHHHHHHHHHhhhhh-hhhhhccccchhHHHHHHHHH-H
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTL--INIFSGTTNFATLLG-AFLSDTYFGRYKTLGFASVAS-F 102 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~--~~~~~~~~~~~~~~~-G~lsDr~~Grr~~l~~~~~~~-~ 102 (588)
..+..+.+.+.+.+....+.+|.|++ +.|.|.++.|.+ .....+...+.+|+. ++.+|| +||||.+++.+.+. .
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHH
Confidence 34455667777777777788999986 569999999997 456677777777777 668999 69999976655332 2
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+....+.... + .......++....+.++..+...+...++..|..+ ++.++...
T Consensus 82 ~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~------~~~~~~~~ 135 (390)
T TIGR02718 82 ACLASLALVG--P------------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFN------GRTLAKGN 135 (390)
T ss_pred HHHHHHHcCC--c------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------HhhhhHHH
Confidence 1222222110 0 00112233344444445555555555555555432 22223444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+....+..+|..+++...+++.+.+|||..|++.+++.++..+..+..
T Consensus 136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 555556678888888888889999999999999887766555544433
No 99
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.72 E-value=6.2e-15 Score=160.35 Aligned_cols=174 Identities=12% Similarity=0.002 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc-----chhHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG-----RYKTLGFASVAS 101 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rr~~l~~~~~~~ 101 (588)
..+....+...+. +.....++.++++++|+|.++.+...+...+...+ .++.|.++|| ++ ||+.++++.++.
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~-~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDT-FPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHh-cCCCCccchHHHHHHHHHH
Confidence 3444466777777 77777888899999999999999999998888877 4559999999 68 777777776555
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
. ...+..++.. +.......+.+++.+++.+....+..++..|..+ +++ +..+..
T Consensus 106 ~-~~~~~~l~~~---------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~ 159 (468)
T TIGR00788 106 S-AILYGLLPGK---------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSL 159 (468)
T ss_pred H-HHHHHhcccc---------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCe
Confidence 2 1122222210 0123334447888899999988899999999987 222 222345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.++.|...++|..+++.++|++.+.++|+..|++.+++.++......+
T Consensus 160 ~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 160 VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 666677778999999999999999999999999887776666443333
No 100
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.72 E-value=1.7e-15 Score=158.40 Aligned_cols=381 Identities=12% Similarity=0.014 Sum_probs=213.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH--HHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL--GMLVL 108 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i--~~~~~ 108 (588)
...+...+++-...++.+.++++..|+|.++.|.+.++..+...+.+|+.|.++|| +|.||-++.......+ +-+..
T Consensus 14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~ 92 (412)
T PF01306_consen 14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFI 92 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444544567899999998899999999999999999999999999999999 7988766554433221 22222
Q ss_pred -HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHh----hcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 109 -SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI----GAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
...+ .++ .+ ++++..+.++ +.....|...++..+. .|..+.=|+
T Consensus 93 ~v~~p---ll~-----------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--------sr~~~feYG 141 (412)
T PF01306_consen 93 YVFGP---LLQ-----------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERV--------SRRNGFEYG 141 (412)
T ss_dssp HTHHH---HHH-----------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--------HHHHSS-HH
T ss_pred HHHHH---HHH-----------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHH--------HHHhcCCcc
Confidence 1111 000 01 2233333333 3333334444443221 222234477
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 263 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
-....+.+|.+++..++|++.+ .+-+..|++..+..++..++....+++.+++.+..+...
T Consensus 142 ~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~------------------ 202 (412)
T PF01306_consen 142 RARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG------------------ 202 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS------------------
T ss_pred hHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc------------------
Confidence 7778889999999999998886 456677787655444444444444433211110000000
Q ss_pred CCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHH-HHHHHH
Q 007827 264 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWA-SAIVYY 342 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 342 (588)
++ .+.....+ ..+....+++.....+.. ....+.
T Consensus 203 -----------------~~---~~~~~~~~-------------------------~~~l~k~~~fw~~~l~v~g~~~~Y~ 237 (412)
T PF01306_consen 203 -----------------AK---KDKVSLKD-------------------------VLSLFKMRNFWFFVLFVIGVAAIYD 237 (412)
T ss_dssp -----------------S---------HHH-------------------------HHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cC---CCCCcHHH-------------------------HHHHhcchhHHHHHHHHHHHHHHHH
Confidence 00 00000000 000111122222222222 222334
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
...+|++.++..+ .+.. + ..+..++.++.+.+.+=.+++ .+...+.+|.|.| ..+.++..+++
T Consensus 238 vfdqqf~~y~~~~---f~~~-~-----~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k-------~~Lllag~i~~ 300 (412)
T PF01306_consen 238 VFDQQFPIYFASF---FQSA-G-----QGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAK-------NLLLLAGVIMA 300 (412)
T ss_dssp HHHHHHHHHHHHT---SSSH-H-----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hccc-c-----cChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChH-------hHHHHHHHHHH
Confidence 4444443333211 1111 0 223344555544443222221 1122246665544 56666666676
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHH-HH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FV 501 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~-~~ 501 (588)
+=....+.. .+.+++++.-.+.++-..+......-|+.+.+|+|+.++...+. ..
T Consensus 301 iRi~~~~~~------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~ 356 (412)
T PF01306_consen 301 IRIIGSGFA------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQF 356 (412)
T ss_dssp HHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTT
T ss_pred HHHHHHhhh------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 666666553 46667777888899988888899999999999999999999886 68
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
..++|..+.+.+.|.++|.. +++..|++.+++.+...++-.+..++.
T Consensus 357 ~~~~~~~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 357 AKQIGIIILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp THHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 89999999999999999865 566788898888887777766665443
No 101
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.72 E-value=4.7e-15 Score=148.15 Aligned_cols=419 Identities=15% Similarity=0.091 Sum_probs=227.6
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
.....+....-+....|.+..+..++......+..+++...|.++|+ +||||.+.+..+..++..+.-..+
T Consensus 93 ~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s-------- 163 (528)
T KOG0253|consen 93 EMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS-------- 163 (528)
T ss_pred HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC--------
Confidence 33444555566677899999999999999999999999999999999 799999877765554443333322
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.++..+++.|.+.|+|.|+ .|...++-.|..|..+... -.+......+|.++.-.+
T Consensus 164 ----------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~-------~~V~~~~waig~v~ea~l 219 (528)
T KOG0253|consen 164 ----------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWL-------LTVMSFFWAIGQVFEALL 219 (528)
T ss_pred ----------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCc-------chhHHHHHHHHHHHHHHH
Confidence 4678899999999999999 8888888888776422211 112224567777777777
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHH-HHh-ccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCcccc--ccC-C
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAM-FFL-GSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTL--HNH-I 274 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 274 (588)
.=.+..++||||..........+.+.. ++. .++++.-.+.++.+ ..+.+.++.|-++...+.....-. .+. +
T Consensus 220 aw~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k---AletL~kiArmNg~qlplgvl~~s~~~~~e~ 296 (528)
T KOG0253|consen 220 AWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK---ALETLHKIARMNGKQLPLGVLESSAIDRQEQ 296 (528)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH---HHHHHHHHHHhcCCCCCcceeeeehhhhhhh
Confidence 666677789998776655433333333 222 34554433333333 345555666655554443221100 000 0
Q ss_pred CcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHHHHHHHHH------HHhc
Q 007827 275 PKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYV------ALVQ 347 (588)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~ 347 (588)
++.+..+. .. .+. ++..++..+ +++ + .-+|+.+.. ...+.....++. -..|
T Consensus 297 e~~~~~~~-~~------------~a~---ke~rg~~~n---Lls--p-~lrkttlllw~iwfgnafsyyg~VLlttelfq 354 (528)
T KOG0253|consen 297 EESDLDDS-KS------------SAA---KEVRGGTTN---LLS--P-KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQ 354 (528)
T ss_pred hhhchhhh-hh------------ccc---cccccchHh---hcC--h-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 11111000 00 000 000000000 111 1 112222222 221222222221 1111
Q ss_pred ccc----eeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHH
Q 007827 348 QQT----YVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF 423 (588)
Q Consensus 348 ~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~ 423 (588)
... +.-+++...+.+.. ........+ .+.+..-+....+-.+..-+.+|+||| +.|...+++.++
T Consensus 355 sgd~c~~~~r~~p~e~e~~~~--c~~s~~~dY--rdllitslaefPGlLIt~~iverlGRK-------kTMal~l~~f~i 423 (528)
T KOG0253|consen 355 SGDACPLYNRFLPTELETRAN--CPLSVAKDY--RDLLITSLAEFPGLLITGVIVERLGRK-------KTMALSLILFGI 423 (528)
T ss_pred ccCccccchhcchhHHHhhhc--CCccchhHH--HHHHHHHHhhCCchhHHHHHHHHhcch-------hHHHHHHHHHHH
Confidence 111 11122222222110 000111111 111111111111111122247778888 567777766666
Q ss_pred HHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHH
Q 007827 424 TMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~ 503 (588)
..+.+..-. +......+++. .-++....+...|.|..|++|...|+++.|.+...+
T Consensus 424 flfll~~c~--------------------~rn~~tvllf~----arafisg~fqvaYvYtPEVyPTavRatgvGtcSsma 479 (528)
T KOG0253|consen 424 FLFLLTTCK--------------------TRNAYTVLLFT----ARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMA 479 (528)
T ss_pred HHHHHHHhc--------------------CcchhHHHHHH----HHHHHhchheEEEEecCcccchhhhhcchhhhhhHH
Confidence 555443311 01122222222 233344556677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 504 AISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 504 ~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
.+|+++.|++. ..+.. +......+.+++++++++..+++-.|+|+|++
T Consensus 480 RIggI~~p~iA-~~~e~-----------------s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 480 RIGGIFSPVIA-MRAEL-----------------STSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhhhhhhHHH-HHhcc-----------------ceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999888 44332 12234567788888888888888889988864
No 102
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.71 E-value=1.9e-15 Score=162.86 Aligned_cols=357 Identities=14% Similarity=0.119 Sum_probs=214.0
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhh----ccccchhHHH-HHHHHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSD----TYFGRYKTLG-FASVASFLGMLVL 108 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grr~~l~-~~~~~~~i~~~~~ 108 (588)
+..+........+++.|+++.+|+++...|.+..+..+...+..|+.|+++| | +||||..+ .+.+..+++..++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 3444444555678899999999999999999999999999999999999999 7 69776554 5667777776666
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.... |. . .........+++..++..++......+..++..|+.++.++ | ....++-..+
T Consensus 90 f~~~--p~----~----------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~--R---~~l~~~~~~~ 148 (428)
T PF13347_consen 90 FSPP--PA----G----------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE--R---TRLSSWRMIF 148 (428)
T ss_pred hccc--cc----h----------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh--h---hhHHHHHHHH
Confidence 5431 10 0 00012344557777777899999988889999999875332 2 2345555556
Q ss_pred HHHHHHHHHHHHHHhcccc-------chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccC
Q 007827 189 FTFAMMISLTVIVYVQSDV-------SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLK 261 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (588)
..+|..+...+.+.+.... +|++...+.++..++..++..+..|+..++.+++++....
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~-------------- 214 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISL-------------- 214 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccccc--------------
Confidence 6666665555555443221 5887777766666555555444444311101000000000
Q ss_pred CCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHH
Q 007827 262 LPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVY 341 (588)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (588)
+..++.. .+++. ....+ +.....
T Consensus 215 -------------------------------------------------~~~~~~~----~~nr~-~~~l~---~~~~~~ 237 (428)
T PF13347_consen 215 -------------------------------------------------RDSLRSL----FRNRP-FRILL---LAFFLQ 237 (428)
T ss_pred -------------------------------------------------ccchhhh----cccch-HHHHH---HHHHHH
Confidence 0000000 01111 11111 111111
Q ss_pred HHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHH
Q 007827 342 YVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA 421 (588)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~ 421 (588)
+...........++..+ ..+.+ -....+.....+..++..++..+ +.+|+++| +.+..+.++.
T Consensus 238 ~~~~~~~~~~~~y~~~~---vl~~~---~~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk~-------~~~~~~~~~~ 300 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTY---VLGNE---GLISIFMLIFFVASIVGSPLWGR----LSKRFGKK-------KVYIIGLLLA 300 (428)
T ss_pred HhhhhhhhhHHHHHHHH---HhcCc---hhhHHHHHHHHHHHHHHHHHHHH----HHHHccce-------eehhhhHHHH
Confidence 11111111111111111 11100 01122333344445555555433 48887766 4666777777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-------cchHHH
Q 007827 422 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSI 494 (588)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-------~~~rg~ 494 (588)
+++..+..... ..+.++.++..++.+++.+..+...+++..|..+ +|..|.
T Consensus 301 ~~~~~~~~~~~----------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~ 358 (428)
T PF13347_consen 301 ALGFLLLFFLG----------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM 358 (428)
T ss_pred HHHHHHHHHHH----------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH
Confidence 77776665542 1366777888889999999988898999998876 355799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 007827 495 GGSLAFVGFAISNYLNGFLISMVHRFTK 522 (588)
Q Consensus 495 ~~~~~~~~~~ig~~l~~~~~~~l~~~~~ 522 (588)
..|+.++...++..+++.+.+.+.+..|
T Consensus 359 ~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 359 YFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887764
No 103
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.70 E-value=2.2e-14 Score=156.65 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=113.2
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
....++.+++|- .....|+.+...++..+..++.|.|+|. ||||+.++.+.++..+|.++++-+
T Consensus 65 ~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA-------------- 128 (599)
T PF06609_consen 65 SILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA-------------- 128 (599)
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC--------------
Confidence 445678889985 4667899999999999999999999999 799999999999999999998876
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
++...++++..+.|+|.|.... ....++|..|. +.|. .++.+..........+++.++..+..
T Consensus 129 ----------~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~----k~R~--~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 129 ----------QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPN----KWRG--LGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred ----------CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhccc----chhh--hHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 4567799999999999877664 45567998863 2222 23333333333344456666666666
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH
Q 007827 206 DVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+.+|||.|++..+...+++++.+
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 67899999998887766655433
No 104
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.70 E-value=1.7e-15 Score=170.18 Aligned_cols=193 Identities=15% Similarity=0.180 Sum_probs=139.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
..+......++......-++++|+++..+.|++.+.+.++..++.++.|+++|| +||||.+.+++++++++.++.++..
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChH
Confidence 344444445556666667788999999999999999999999999999999999 6999999999999999999887754
Q ss_pred cccc----------------CCCCCCCCC---------CCCCCCCCC--chhHHHHHHHHHHHHhhcccccccchhhccc
Q 007827 113 AISK----------------LHPPDCGNQ---------DSGACPGPT--PWQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 165 (588)
Q Consensus 113 ~~~~----------------~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 165 (588)
.+.. ..+..|+++ +...|...+ ...+.+++++|+++|+|.+...+...+++.|
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d 199 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD 199 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence 2110 012233211 000111111 1245678899999999999999999999999
Q ss_pred cCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc----------------------chhhHHHHHHHHHHHH
Q 007827 166 QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV----------------------SWAWGLGIPAFMMFLS 223 (588)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~----------------------g~~~~~~~~~~~~~~~ 223 (588)
.+|++ .++...++++....+|.++|+++++++.+.+ +|+..|++.+++.++.
T Consensus 200 ~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 200 FAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred cCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99742 2345688899999999999999999876532 2677787776665555
Q ss_pred HHHHHhccc
Q 007827 224 CAMFFLGSR 232 (588)
Q Consensus 224 ~~~~~~~~~ 232 (588)
.+.+++..+
T Consensus 274 ~v~l~~~p~ 282 (633)
T TIGR00805 274 SIPFFFFPK 282 (633)
T ss_pred HHHHHhCcc
Confidence 444444333
No 105
>PRK11462 putative transporter; Provisional
Probab=99.69 E-value=1.9e-14 Score=156.38 Aligned_cols=175 Identities=13% Similarity=0.170 Sum_probs=119.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhc---cccchhHHH-HHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDT---YFGRYKTLG-FASVASFLGML 106 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr---~~Grr~~l~-~~~~~~~i~~~ 106 (588)
+..+..++.+..+..+++.|+++..|+++..+|.+..+.-+.-++..|+.|+++|| ++||||..+ ++.+..+++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 34445556666667889999999999999999999999999999999999999996 268876555 45566776665
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++...+. . +.......+++...+..++..+...+..++.+|+.++ + +.|++..++..
T Consensus 96 llf~~p~---~---------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~---~eRt~l~s~r~ 152 (460)
T PRK11462 96 LAYSTPD---L---------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND--P---TQRISLQSWRF 152 (460)
T ss_pred HHHhCCC---C---------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--H---HHHHHHHHHHH
Confidence 5544311 0 0012345566667777888888888888999988765 2 22345677777
Q ss_pred HHHHHHHHHHHHHHHHhccc-------cchhhHHHHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSD-------VSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
.+.++|..+++.+...+... .+|+....+.+++.++...+.+
T Consensus 153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 78888887777765443332 2466655554444434433333
No 106
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=151.12 Aligned_cols=120 Identities=19% Similarity=0.088 Sum_probs=100.2
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 133 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (588)
..+.+..-+|.+-+.+.++.++.++..|.+|||| |||+++.+|++..++...+.+.+
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S---------------------- 118 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS---------------------- 118 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3445667789999999999999999999999995 99999999999888877776665
Q ss_pred CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 134 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 134 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
.++..+.++|++.|+.-|-... +.++++|.++++++ ..+++.......+|..+||++++++..
T Consensus 119 --~~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r------~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYR------PLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhc------cceeeeeehhhhcchhhcchhhhHHHh
Confidence 4666677779999999987654 78999999986332 245777888999999999999999987
No 107
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.68 E-value=1.6e-14 Score=152.22 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=130.8
Q ss_pred hhhhhhhHHHHHHHhcCCCchh-hhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSIT-ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLH 118 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 118 (588)
+-...+++..|+.+++|++.++ .|.+.+++..++.++.+++|+++|| +|.|+++.++.+.+.+...++.++
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa------- 112 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLG------- 112 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHH-------
Confidence 3455667788999999999999 9999999999999999999999999 799999999999999988888886
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHH
Q 007827 119 PPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLT 198 (588)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 198 (588)
.+...+.+.|++.|++.|+.. +...++...+|+ +.++.+.++...+..+|.+++++
T Consensus 113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~------kER~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP------SRYQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999 899999999973 22346688889999999999999
Q ss_pred HHHHhccccchhhHHHH---HHHHHHHHHHHHHhc
Q 007827 199 VIVYVQSDVSWAWGLGI---PAFMMFLSCAMFFLG 230 (588)
Q Consensus 199 i~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~ 230 (588)
++++ ...+||++-+.+ ......+++++.++.
T Consensus 169 L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 169 LGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998 446788865544 333344444444443
No 108
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.4e-14 Score=157.67 Aligned_cols=426 Identities=15% Similarity=0.090 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHhhhhhh---hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSS---NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~---~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
+.+..|..+...+++.. .+-..+.++++.+..+.+|+.++......+..|+.+.+.|| +|.|++.++|.++.++|.
T Consensus 47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~ 125 (509)
T KOG2504|consen 47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGL 125 (509)
T ss_pred eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHH
Confidence 33344444444444332 34456678999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHH-HHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF-TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
++.+++. +.+.++ ..-++.|+|.|..+.++...+...|+ +.|+.+.++
T Consensus 126 ~lssF~~------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-------kkR~lA~Gi 174 (509)
T KOG2504|consen 126 LLSSFAT------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-------KKRALATGI 174 (509)
T ss_pred HHHHHHh------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-------HHHHHHHhh
Confidence 9988874 454544 44566699999999999999998884 223355666
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCC
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPE 264 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (588)
-..+..+|.++=|.+..++.+.+|||+.+++.+.+.+-.++.....+|.....++. .. ++. ++..... +
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~-~~~--------~~~~~~~-~ 243 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EE-KDL--------RNSAASV-E 243 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hh-hhh--------ccccccc-c
Confidence 66677788888888888999999999999988777765555555555543332222 00 000 0000000 0
Q ss_pred CCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Q 007827 265 EPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 344 (588)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (588)
...........+ ....+.+ ..........+..+.......+.... .++.+-..++..+...+...+..+.+...
T Consensus 244 ~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ll~~~~fl~~~~~~~~~~~g~~~p 317 (509)
T KOG2504|consen 244 STPKPVELRISE----RDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLS-MLDLSLLKDPKFLLLALSNLFAYLGFNVP 317 (509)
T ss_pred cccccccccccc----CCCCCCc-ccccchhhhhhCCccccccchhhhhh-hhhHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 000000000000 0000000 00000000000000000000000000 00011111111111111111111111111
Q ss_pred HhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHH
Q 007827 345 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFT 424 (588)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~ 424 (588)
+...+.+.. .....+.... .....++..+.++-++.+.+ .|+-. .++.....++++...++
T Consensus 318 ~~~l~~~~~-~~g~~~~~aa-----~l~Siigi~~i~gRi~~G~l--------aD~~~-----~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 318 FVYLPSYAK-SLGLSSNDAA-----FLLSIIGVSDIIGRIILGLL--------ADKPG-----IRALVLFLLTLLIAGLA 378 (509)
T ss_pred HHHHHHHHh-hcCCChhhhH-----HHHHHHHHhhhhhhhhhhhh--------cCccc-----cchHHHHHHHHHHHHHH
Confidence 111111111 1011111000 11122333333333333333 44422 23445566666666666
Q ss_pred HHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 007827 425 MIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA 504 (588)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ 504 (588)
..+.... .+++.++...++.|++.+...........+..+.+.-+.+.|+..+...
T Consensus 379 ~~~~p~~------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~g 434 (509)
T KOG2504|consen 379 RLFLPFA------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQG 434 (509)
T ss_pred HHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhH
Confidence 6555443 3556667777888888888777777788899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 505 ISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 505 ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
++..+++.+.+.+.|.+ ++|...|++.+...+++....++..
T Consensus 435 i~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 435 IGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999888765 2456677777777777765444433
No 109
>PTZ00207 hypothetical protein; Provisional
Probab=99.66 E-value=3.3e-13 Score=148.38 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=115.9
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
.|++..+. ..+++++|+|..+.+++.++.. ...++++++|+++|| +|||+++.++.+++.++.++++++...
T Consensus 43 ~y~fsv~s-~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~----- 114 (591)
T PTZ00207 43 MYAFNLIS-GAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQE----- 114 (591)
T ss_pred HHHHHHHH-HHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 34544444 4568899999999999887743 445677789999999 699999999999999999998886210
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHH-HHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI-SLT 198 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~ 198 (588)
.-..+.+.+++.|++.|+|.+.+.+.....+.++||+ .++.+.++......+|+++ +++
T Consensus 115 -------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l 174 (591)
T PTZ00207 115 -------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSI 174 (591)
T ss_pred -------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 0013578889999999999998888888888999862 1246788888888899975 555
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 199 VIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 199 i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
..+++. .+|+..|++.++..++..++
T Consensus 175 ~~~l~~--~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 175 QLAFFS--DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHH--HhHHHHHHHHHHHHHHHHHH
Confidence 555544 35777777666555444443
No 110
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7.4e-15 Score=148.70 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=129.5
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 133 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (588)
.++-+.++.|++.....+.+.+..|+.|.+.|| +|+|-.+++|+..+...++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 467788899999999999999999999999999 799999999999999999999887
Q ss_pred CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHH
Q 007827 134 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 213 (588)
Q Consensus 134 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~ 213 (588)
.++++++++|.++|+|.++..++..++++|.||+++++ ++.++..-.+..+|-.+||.++|.+.+..|++.+|
T Consensus 157 --~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er-----~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 157 --NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNER-----GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred --chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhh-----hHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 45789999999999999999999999999999875432 24577777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007827 214 GIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 214 ~~~~~~~~~~~~~~~~~ 230 (588)
.+.+++.++-..+-++.
T Consensus 230 lVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 99988887766654443
No 111
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.61 E-value=9.4e-13 Score=139.32 Aligned_cols=363 Identities=12% Similarity=0.114 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccchh-HHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYK-TLGFASVASF 102 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~-~l~~~~~~~~ 102 (588)
..-....+..++.+..+..++..|+++.+|+|+..+|.+..+.-+.-++..|+.|.++||. +||+| -++++.+..+
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~ 94 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA 94 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence 3334456666777777889999999999999999999999999999999999999999973 46655 4556667777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+...++..+.... ...+....++...+.++++.....+-.++.+++-++ +++| .+..
T Consensus 95 i~~~l~F~~p~~~------------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~ER---~~l~ 151 (467)
T COG2211 95 IVAVLLFITPDFS------------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQER---ASLT 151 (467)
T ss_pred HHHHHHHcCCCcc------------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHHH---HHHH
Confidence 7777776653210 013456667778888999999888888998888765 3332 4567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHHHHhccce-eeccCCCCC-hhhhHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQS-------DVSWAWGLGIPAFMMFLSCAMFFLGSRL-YAKVKPEGS-PLASTVQVFVA 253 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 253 (588)
++-....++|..+...+.+.+.. ..||+....+.++...+..+..++..+| ..+..+.++ ......+.+..
T Consensus 152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~ 231 (467)
T COG2211 152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLL 231 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHH
Confidence 77777778887766555544432 2456665555554444444443333222 111111110 00000000000
Q ss_pred HHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh
Q 007827 254 AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP 333 (588)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (588)
.. .|+. +...+.
T Consensus 232 ~~-------------------------------------------------------------------~Nrp-~~~~l~ 243 (467)
T COG2211 232 IF-------------------------------------------------------------------KNRP-LLLLLL 243 (467)
T ss_pred HH-------------------------------------------------------------------ccch-HHHHHH
Confidence 00 0111 111111
Q ss_pred HHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHH
Q 007827 334 IWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR 413 (588)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~ 413 (588)
...+.+...+...+...++..+.-..- .............+.+++.++ .-++.+|+||| +.
T Consensus 244 ---~~l~~~~~~~i~~s~~~yy~~y~lg~~-----~l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gkk-------~~ 304 (467)
T COG2211 244 ---MNLLLFIAFNIRGSIMVYYVTYVLGDP-----ELFAYLLLLASGAGLLIGLIL----WPRLVKKFGKK-------KL 304 (467)
T ss_pred ---HHHHHHHHHHHHhhhhheeEEEEcCCh-----HHHHHHHHHHHHHHHHHHHHh----HHHHHHHhchH-------HH
Confidence 122223333333332222221111000 011111111112222222233 22346666655 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccC------
Q 007827 414 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF------ 487 (588)
Q Consensus 414 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~------ 487 (588)
+.++.++.+++.....+. ...+..+.+...++.+++.+...+..|++++|..
T Consensus 305 ~~~~~~~~~i~~~~~~f~----------------------~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~ 362 (467)
T COG2211 305 FLIGLLLLAVGYLLLYFT----------------------PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK 362 (467)
T ss_pred HHHHHHHHHHHHHHHHhh----------------------cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHH
Confidence 888888888887777664 1245566666778888899998888898888754
Q ss_pred -CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 488 -PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 521 (588)
Q Consensus 488 -P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~ 521 (588)
-.|..|...|..++..-+|.+++.++.+.+....
T Consensus 363 TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 363 TGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566788899999999999999999999998776
No 112
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.58 E-value=3.3e-13 Score=145.71 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=120.4
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 007827 52 TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACP 131 (588)
Q Consensus 52 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (588)
+++.++...+.+.+.+++.+++.++.+++|+|.|| +.-.+.+....+.+.+..++....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~-------------------- 131 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV-------------------- 131 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 36888999999999999999999999999999999 686776666665555444333333
Q ss_pred CCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh------cc
Q 007827 132 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV------QS 205 (588)
Q Consensus 132 ~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~------~~ 205 (588)
.+.+.+++.|++.|+..++.+|+...+++..|.+++.. .-+++++...++|.++|.++...+ ..
T Consensus 132 ----~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g------~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 132 ----HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERG------LRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred ----hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhh------hhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 46788999999999999999999999999999754433 348899999999999999998775 33
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 206 DVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
..||||.|++.+++.+...++.++..|+
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecC
Confidence 4789999999988776665554444443
No 113
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.5e-12 Score=129.49 Aligned_cols=325 Identities=15% Similarity=0.142 Sum_probs=208.5
Q ss_pred HHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007827 47 LLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQD 126 (588)
Q Consensus 47 l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (588)
+..-+++++|+|.+++|.+.+...++..+.+++..+|+.| +|.++.+..++++.++|..+=...
T Consensus 34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~--------------- 97 (395)
T COG2807 34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG--------------- 97 (395)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 3345678999999999999999999999999999999999 799999999999988887765442
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 007827 127 SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~ 206 (588)
+.+.++.+-.+.|.|.+......++++-+.||. ..+...++|....++|+++++.+...+.++
T Consensus 98 ----------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~aaLaa~lavpla~~ 160 (395)
T COG2807 98 ----------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAGAALAAALAVPLAQH 160 (395)
T ss_pred ----------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHHHHHHhhhhhHHHHh
Confidence 356789999999999999999999999999962 234678888889999999999999888877
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCC
Q 007827 207 V-SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 285 (588)
Q Consensus 207 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (588)
. |||..+..-+...++++++.+....+.. .+.....
T Consensus 161 ~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~----------------------------------------- 197 (395)
T COG2807 161 SGGWRGALGFWALLALLALLIWLPQALREQ--AASIATK----------------------------------------- 197 (395)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccc-----------------------------------------
Confidence 6 7999888877776666665443221110 0000000
Q ss_pred CCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccccccccCC
Q 007827 286 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGN 365 (588)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 365 (588)
.....+.||. .......+.+-+.+..+|....+++.++..+....+ +-|
T Consensus 198 ---------------------~~~~~~vw~~--------~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~-~aG- 246 (395)
T COG2807 198 ---------------------LVSVRKVWRS--------PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAA-EAG- 246 (395)
T ss_pred ---------------------cccccccccC--------chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHH-Hhh-
Confidence 0000122311 111111223345566667777666665544322111 111
Q ss_pred ccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 007827 366 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG 445 (588)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (588)
....+..+..+....+.-. +.+|..++ . .........+.++++-+.+.+
T Consensus 247 --------~llsl~~l~~~~~~ll~P~----la~R~~n~----r--~~~~~~~~~~l~G~~G~~~~P------------- 295 (395)
T COG2807 247 --------SLLSLMQLAQLPTALLIPL----LARRSKNQ----R--PLVVLALLLMLVGLVGLLLAP------------- 295 (395)
T ss_pred --------hHHHHHHHHHHHHHHHHHH----HHHHhccc----c--hHHHHHHHHHHHHHHHHHHhh-------------
Confidence 1111111111111111111 24442211 1 233333344444443333321
Q ss_pred ccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 446 LEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 521 (588)
Q Consensus 446 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~ 521 (588)
....++| .++.|+|.+..++....++...++ ++.-+.-.|+......+=..+||.+.|.++|.+
T Consensus 296 --------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 296 --------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred --------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 1123333 477899989999988888888765 466677788888888888999999999999987
No 114
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.1e-13 Score=128.23 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=108.5
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
..-+..+++.+.+++.++..++.++++.-..+.+.++|++.||.+|-|..-++-++..++|.+..+....
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi---------- 132 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI---------- 132 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH----------
Confidence 3456778888899999999999999999999999999999999989887666666666677766655321
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
.+.++.+.++|++.|+|.-....+.+.+...+|.. +.....++++.....+|...--.+.+++
T Consensus 133 -----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG------KELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 133 -----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG------KELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred -----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecC------ccccchhhHHHHHHHhhceeeeeecHHH
Confidence 15789999999999999888888889999988853 3345678998888889988766666666
Q ss_pred ccc
Q 007827 204 QSD 206 (588)
Q Consensus 204 ~~~ 206 (588)
.+.
T Consensus 196 y~~ 198 (459)
T KOG4686|consen 196 YDT 198 (459)
T ss_pred HHH
Confidence 554
No 115
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.45 E-value=1.8e-10 Score=124.97 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccch
Q 007827 459 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR 538 (588)
Q Consensus 459 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 538 (588)
+.+.+..++.|+..+...+..-++..+..|++..+...|++.+....+..+||.+.+.+.+.++ +
T Consensus 381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~ 445 (477)
T PF11700_consen 381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------S 445 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------C
Confidence 3344556678899999999999999999999999999999999999999999999999988762 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 007827 539 LDYFYYLVAALGLLNFGFFLLC 560 (588)
Q Consensus 539 ~~~~f~~~~~i~~~~~~~~~~~ 560 (588)
.++.+....++.++++++.+..
T Consensus 446 ~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 446 QRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred chhHHHHHHHHHHHHHHHHhhc
Confidence 5566667777777776655333
No 116
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.43 E-value=5.6e-10 Score=115.36 Aligned_cols=374 Identities=13% Similarity=0.091 Sum_probs=210.2
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc-----chhH-HHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 52 TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG-----RYKT-LGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 52 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
..|++++..-.+.++....+.. ...+..|+.||+. + ||-- +..+.++.+.+..+...+...- .++
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l-------~~~ 77 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL-------AES 77 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH-------ccc
Confidence 4578899888888888877666 5799999999994 7 6644 4445556666655554432110 000
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
. ..+++++........+...+.|+|.+...++..++++|..+++++ ....++.|....+|.+++.++.+.+.+
T Consensus 78 ~-~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R------~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 78 G-QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERR------PRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred c-cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0 011233333445566677778999999999999999998875322 346888899999999999999998887
Q ss_pred ccchh----hHHHHHHHHHHHHHHHHHhccceeeccC-CCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCccccc
Q 007827 206 DVSWA----WGLGIPAFMMFLSCAMFFLGSRLYAKVK-PEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCIN 280 (588)
Q Consensus 206 ~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (588)
.++.. ..-....+..++.++..+-.+++.++.. .++++.....
T Consensus 151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~-------------------------------- 198 (403)
T PF03209_consen 151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFR-------------------------------- 198 (403)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHH--------------------------------
Confidence 77632 2222222222333333332223222111 0111111000
Q ss_pred CCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeec-ccc
Q 007827 281 SKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQS 359 (588)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 359 (588)
..|+++..++ +.+++ ...+++....+++... .+--|. ...
T Consensus 199 -------------------------------~a~~~~~~~~--~a~~f--~~fl~l~t~a~~~QD~----iLEPygg~Vf 239 (403)
T PF03209_consen 199 -------------------------------EAWRQVWASP--QARRF--FVFLFLGTLAFFMQDV----ILEPYGGEVF 239 (403)
T ss_pred -------------------------------HHHHHHHhCC--ChhHH--HHHHHHHHHHHHhhHH----HcCCchhHHc
Confidence 1111111000 01111 1111222222222221 111121 112
Q ss_pred ccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 360 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 439 (588)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 439 (588)
..+.+ ....+......+.+++..+..+. +.+|.+ +.+...+|..+.++++..+....
T Consensus 240 gmsv~------eTT~Lta~~~~G~L~G~~~~g~~---l~~~~~-------~~~~a~~G~~~~~~~f~lii~a~------- 296 (403)
T PF03209_consen 240 GMSVG------ETTRLTAFWGGGTLLGMLLAGFL---LSRRLG-------KKRTAALGCLLGALAFALIILAG------- 296 (403)
T ss_pred CCCHH------HHHHHHHHHHHHHHHHHHHHHHH---hcCCCC-------chHHHHHHHHHHHHHHHHHHHHH-------
Confidence 22222 23344555566666666555444 222322 22344455555555544433321
Q ss_pred ccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 440 LSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
...+.+.+....+++|++.+.......+...+.++++..|..+|.+...+.++..++.++++.+.|
T Consensus 297 --------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 297 --------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred --------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112455677788999999999999999999999999999999999999999999999999999988
Q ss_pred hccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 007827 520 FTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFG 555 (588)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~ 555 (588)
... ++........|..+|..=++..+++..
T Consensus 363 ~~~------~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 363 LVR------ALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HHH------HhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 753 222211122455555554444444443
No 117
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.38 E-value=1.6e-11 Score=130.67 Aligned_cols=175 Identities=12% Similarity=0.043 Sum_probs=125.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
++..+..+...+.....++.+..++|.|+++++|++..+.+.+.+...++..++.+++|+++|| +|||+.+..+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~ 293 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGV 293 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHH
Confidence 3434434344444444455566789999999999999999998888778888899999999999 699998877665554
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+........ .+...+++.+++.+++.|...+....+..|.+|+ . ++...
T Consensus 294 ~~~~~~~~~------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~---~----~g~~~ 342 (393)
T PRK15011 294 CFYAGMLMA------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG---Q----AGSAT 342 (393)
T ss_pred HHHHHHHHH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---C----cchHH
Confidence 443333222 2344556677777777666656566777787752 1 23467
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+.++...++|..++|.++|.+.+.+||+..|++..+..++++++.+.
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 77777889999999999999999899999998877777666665544
No 118
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.34 E-value=8e-12 Score=128.39 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=134.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-cchhHH-HHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF-GRYKTL-GFASVAS 101 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grr~~l-~~~~~~~ 101 (588)
|.+|++.+..++..+..|++..+.|.|+.|..|+|..++++..+.+-++...+++++||+|||++ |||... ++++++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 45578888889999999999999999999999999999999999999999999999999999988 777644 3334444
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
+++......+++ .++.+..+..+.+|+...+..-.+.....|..|. ++.+++
T Consensus 332 ~~~~~~~w~~~~----------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK------~AaGtA 383 (448)
T COG2271 332 TASLVLYWLAPN----------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK------KAAGTA 383 (448)
T ss_pred HHHHHHHHcCCC----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH------hhccch
Confidence 444455555432 3566677777777766555444444555676653 444556
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 182 FNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 182 ~~~~~~~~~~-g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+....+..+ |++.+....+++.+.+||...|.+..+..+++.+++...
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 6666667777 888888888899888999999988777666666654443
No 119
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.32 E-value=4.1e-11 Score=131.45 Aligned_cols=170 Identities=13% Similarity=0.054 Sum_probs=118.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH-
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS- 109 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~- 109 (588)
...++..+.+|++..++|.|+++.+|++..+.+++.....++..++.+++|+++|| +|||+.+..+.++..++...+.
T Consensus 257 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~ 335 (490)
T PRK10642 257 GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFI 335 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788889999999998899999888888888889999999999999999 6999998887765444333222
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
...+ .+...+++++++.+++.+...+....++.+.+|++ . |+.+.+..+...
T Consensus 336 ~~~~----------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~----~--Rg~~~g~~~~~~ 387 (490)
T PRK10642 336 LINS----------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH----I--RYSALAAAFNIS 387 (490)
T ss_pred HHhC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----c--chHHHHHHHHHH
Confidence 2111 23456677888888777666666777888888742 2 234566544555
Q ss_pred HHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHHh
Q 007827 190 TFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+++.++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus 388 ~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 388 VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 666778899988887654 4666665544444444444333
No 120
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.29 E-value=8e-11 Score=123.84 Aligned_cols=164 Identities=15% Similarity=0.027 Sum_probs=124.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
.++...........+|.|+++++|.++.+.+++.........++.+++|+++|| +|||+.+..+.+...+........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~- 285 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAAD- 285 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHH-
Confidence 333333344455678889988999999999998888777778889999999999 699999887766554443333332
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA 192 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 192 (588)
.+.+.+++.+.+.|++.+...+....+..|..|+ + ++...+.++...++|
T Consensus 286 -----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~g 335 (375)
T TIGR00899 286 -----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG----R---AGAATTLYTNTGRVG 335 (375)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----h---hhHHHHHHHHHHHHH
Confidence 2445566778888888888777777888887752 1 125688888889999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
..++|.+++++.+..||+..|++.++..+++.++..
T Consensus 336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999989999999988877766666544
No 121
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.29 E-value=4.2e-11 Score=130.57 Aligned_cols=174 Identities=10% Similarity=-0.038 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+.+..++....+++...++|.|+++++|+|..++++......++..++.+++|+++|| +|||+.+.....+..++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHH
Confidence 4555556666666677788899999999999999999999999999999999999999999 699988766544443333
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.++.+... .+....++.+++.|++.............|.+|+ +.++.+.++.
T Consensus 339 ~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~------~~~g~a~gi~ 390 (467)
T PRK09556 339 TLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK------KAIGVANGIK 390 (467)
T ss_pred HHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch------hhHHHHHHHH
Confidence 22222211 2334455666677754333222223455687763 3345678888
Q ss_pred HHHHHH-HHHHHHHHHHHhcc------------ccchhhHHHHHHHHHHHHHHHHH
Q 007827 186 YFTFTF-AMMISLTVIVYVQS------------DVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 186 ~~~~~~-g~~i~~~i~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+...++ |..++|.+.|++.+ ..||+..|++..+..+++++..+
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 888886 77899999999988 57899999887776666655444
No 122
>PRK03699 putative transporter; Provisional
Probab=99.28 E-value=5.9e-11 Score=126.42 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+...+..++....++++..++|.|+++.+|+|..+++.+.+.+.++..++.++.|+++|| +|||+.+.....+.++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHH
Confidence 333344455556667788999999999999999999999999999999999999999999 6999988877665555444
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
+.... .+...+.+..++.|++.+...+...++..+..+++ + +...+...
T Consensus 287 ~~~~~------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---~----~~~~g~~~ 335 (394)
T PRK03699 287 LFVNT------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA---S----PKLVNFIL 335 (394)
T ss_pred HHHHc------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---C----HHHHHHHH
Confidence 43332 12334455667778877777777777777765421 1 12356677
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
...++|..++|.+.+++.+..|++..+++..+..+++.+
T Consensus 336 ~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 336 TCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 788899999999999999999999998876666555543
No 123
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.26 E-value=6.5e-11 Score=123.97 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+.+....++..+.......+.+.|. +++|.+..+.+.+.....++..++++++|+++|| +|||+.+..+.++..++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHH
Confidence 3333333444444444555666665 5689999999999999999999999999999999 6999999888888777766
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
+...... .+...++...++.+++.+...+..++++.|.+|+++ ++..+++++
T Consensus 286 ~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 337 (377)
T TIGR00890 286 AMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLY 337 (377)
T ss_pred HHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHH
Confidence 6554421 122334456677788888888777888899886422 235688888
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
...++|..++|.+.+.+.+..||++.|.+.++..+++
T Consensus 338 ~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 338 TAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 8999999999999999999999999998877655544
No 124
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.26 E-value=5.4e-10 Score=115.75 Aligned_cols=382 Identities=11% Similarity=0.039 Sum_probs=202.0
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN 124 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (588)
+....|.++.+| +...+-|...+|.+.+....+.+-|+.|| +|-|.+++++.++-++|..+=.++. .|.++
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss-~p~v~------ 135 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISS-LPFVP------ 135 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhcc-Ccccc------
Confidence 344557777788 77888899999999999999999999999 6999999999999999987755542 23221
Q ss_pred CCCCCCCCCCchhHH--HHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 125 QDSGACPGPTPWQLA--FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 125 ~~~~~~~~~~~~~~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
..++ ..+.+-.+.+.+.-.+.....-+..-+|+++++... ...+ .+++.+|.+++-++.+.
T Consensus 136 -----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A----~~~~--v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 136 -----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIA----TVLG--VMGNPLGVAVGFLLPPI 198 (480)
T ss_pred -----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhh----hhHH--HhcchHHHHHHhhccce
Confidence 1233 666777787777777766555555667765433322 2232 23344555555444443
Q ss_pred hc------cccchhhH--HHHHHHHHHHHHHHHHhccceeeccCCCCChhhh----HHHHHHHHHHhhccCCCCCCcccc
Q 007827 203 VQ------SDVSWAWG--LGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAS----TVQVFVAAIKKRHLKLPEEPWLTL 270 (588)
Q Consensus 203 ~~------~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 270 (588)
+. ++.+|... |+...++..+.+++..+.+++.++.||..+.... ..+.+...+
T Consensus 199 lV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~--------------- 263 (480)
T KOG2563|consen 199 LVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCF--------------- 263 (480)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHH---------------
Confidence 33 23446542 4433333333334444444444444443211110 001111011
Q ss_pred ccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc
Q 007827 271 HNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT 350 (588)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (588)
.++..++..+...+....++..+..+..
T Consensus 264 ----------------------------------------------------~n~~F~il~~~ygi~~g~F~~l~~~l~~ 291 (480)
T KOG2563|consen 264 ----------------------------------------------------KNRQFIILAICYGIGLGLFNSLSTLLNL 291 (480)
T ss_pred ----------------------------------------------------cCccHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 1122222222222222223333222221
Q ss_pred eeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHH-HHHHH
Q 007827 351 YVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFT-MIISG 429 (588)
Q Consensus 351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~-~~~~~ 429 (588)
.+.. .++-. ...+....+..+..+++... ...+.||..+ ++...++ .+....++ +.+..
T Consensus 292 ~l~~-sgY~~---------~~aG~ig~l~iv~Gmlga~~----~gii~Dktk~----fk~~~~v--~~~~~~v~~~~l~~ 351 (480)
T KOG2563|consen 292 ALCP-SGYEG---------VFAGYIGALMIVAGMLGALA----SGIIADKTKK----FKLTTLV--LYLFALVGTLMLLT 351 (480)
T ss_pred cccc-ccCCc---------cccchhHHHHHHHHHHHHHH----HHhhhhhhhh----HHHHHHH--HHHHHHHHHHHHHH
Confidence 1110 01100 12233333433333333333 3334666321 2222222 22222233 22222
Q ss_pred HHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHH
Q 007827 430 IIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYL 509 (588)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l 509 (588)
... ..-..++++....+++.++....|...++..|..-|...++..|+.++..++-..+
T Consensus 352 ~t~---------------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~ 410 (480)
T KOG2563|consen 352 CTL---------------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI 410 (480)
T ss_pred hhc---------------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH
Confidence 210 01233455556677777788888999999999977777889999988877777777
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007827 510 NGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 572 (588)
Q Consensus 510 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
-.+..+...+..+. .+| ....-+..+...++..++..++.+.++++..|+.
T Consensus 411 ~~~~~~~~~~~~~~---~~~---------~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 411 LVFIMGILAEDLGP---PGN---------TFPANIFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred HHHHHHHHhhccCC---CCC---------CccchhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 77777766543321 111 1112244556666777777888877777666543
No 125
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.24 E-value=9.3e-11 Score=124.89 Aligned_cols=170 Identities=17% Similarity=0.129 Sum_probs=126.6
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007827 35 FEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAI 114 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~ 114 (588)
+..+++.....+++.|+. +.|+ .+.+.....+.++..++.++.|+++|| +||||.+..+.++..++.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~--- 299 (399)
T PRK05122 227 LASIGFGTIATFITLYYA-ARGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLA--- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh---
Confidence 334555566677888875 4566 345666777888888999999999999 699999888877777766555543
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHH
Q 007827 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM 194 (588)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 194 (588)
.+.+.+++..++.|++.+...+.......|.+|+ +.++..+++++...++|..
T Consensus 300 ---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 300 ---------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPP------QNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred ---------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHH
Confidence 2345567778899999988887777777776653 2335678888889999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccC
Q 007827 195 ISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVK 238 (588)
Q Consensus 195 i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
+++.+.+++.+..||++.|++.++..++++++..+.+++.+++.
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAV 396 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 99999999999899999999888777777666555555444433
No 126
>PRK09952 shikimate transporter; Provisional
Probab=99.21 E-value=2.9e-10 Score=122.92 Aligned_cols=177 Identities=14% Similarity=0.021 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
..++...++..+.+|....+++.|+++.+|++......+.....+...++.++.|+++|| +||||+++.+.++..++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~ 331 (438)
T PRK09952 253 LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAF 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 333445566677888888999999999999998877666666777788899999999999 6999998887766555443
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
.+..... . ......+++..++.+++.+...+...+++.|.+|. +. ++++.++.+
T Consensus 332 ~~~~~~~-~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~----~~--r~tg~g~~~ 385 (438)
T PRK09952 332 PFFMALE-A-------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA----SY--RYSGAGVGY 385 (438)
T ss_pred HHHHHHH-c-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc----ch--hHHHHhHHH
Confidence 3322210 0 01233444556666788777777788999999974 22 234455433
Q ss_pred H-HHHHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHHHHHhc
Q 007827 187 F-TFTFAMMISLTVIVYVQSDV--SWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 187 ~-~~~~g~~i~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
. +..+|+.++|.+.+++.+.. +|+.++.+..+..+++++..+..
T Consensus 386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 3 44588899999999987643 48887777666666665554443
No 127
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.21 E-value=1.1e-10 Score=122.88 Aligned_cols=164 Identities=15% Similarity=0.027 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+......++....++....++|.|+++++|++..+.+.+.....++..++.+++|+++|| +|||+.+..+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHH
Confidence 4455556666677777788899999988999999999999999999999999999999999 699998776555444332
Q ss_pred H-HH-HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 106 L-VL-SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 106 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
. .. .+... .+.+.++....+.+++.+...++..+++.|.+|++.+. .+++
T Consensus 300 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~------~~~~ 351 (394)
T TIGR00883 300 VPLLMALLDS----------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRY------TGAS 351 (394)
T ss_pred HHHHHHHhcC----------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcccee------eEee
Confidence 1 22 12110 23455666777888888888888999999999753221 2344
Q ss_pred H-HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHH
Q 007827 184 W-YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAF 218 (588)
Q Consensus 184 ~-~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~ 218 (588)
. +.....+|..++|.+++++.+..| |++.++...+
T Consensus 352 ~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 352 LAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred ehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 4 334566888899999999998887 8776665544
No 128
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.20 E-value=3.1e-09 Score=117.52 Aligned_cols=196 Identities=16% Similarity=0.260 Sum_probs=138.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
.+......++.....+-+.+.|+++..+.|++.+.+-++..+...+-.+..-| .-|-+.+-+++++++++.+++++-..
T Consensus 106 ~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf 184 (735)
T KOG3626|consen 106 AFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHF 184 (735)
T ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHH
Confidence 33333334666666677778999999999999999999999999999999999 47778888999999999988876422
Q ss_pred ccc------------CC-C-----CCCCCCCCCCCCC---------CCc-hhHHHHHHHHHHHHhhcccccccchhhccc
Q 007827 114 ISK------------LH-P-----PDCGNQDSGACPG---------PTP-WQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 165 (588)
Q Consensus 114 ~~~------------~~-~-----~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 165 (588)
+.. .. + ..|.++.+..|.. .++ .-+.+++++.++.|+|....++...+|+=|
T Consensus 185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD 264 (735)
T KOG3626|consen 185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD 264 (735)
T ss_pred hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence 111 00 1 1122222211111 111 134467899999999999999999999888
Q ss_pred cCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc------------------cc-hhhHHHHHHHHHHHHHHH
Q 007827 166 QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD------------------VS-WAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~------------------~g-~~~~~~~~~~~~~~~~~~ 226 (588)
....+ .-...+++++....+|.++|.++++++... .| |+..|++.+.+.++..+.
T Consensus 265 nvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 265 NVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred ccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 66432 234568899999999999999998876421 23 788888888877777777
Q ss_pred HHhccceeec
Q 007827 227 FFLGSRLYAK 236 (588)
Q Consensus 227 ~~~~~~~~~~ 236 (588)
+++..++.++
T Consensus 339 ~f~fPk~lp~ 348 (735)
T KOG3626|consen 339 LFFFPKELPK 348 (735)
T ss_pred HHhCcccCcc
Confidence 6766655443
No 129
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.20 E-value=6.4e-10 Score=118.47 Aligned_cols=176 Identities=13% Similarity=-0.002 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....++....+++...++|.|+.+ +|++..+++.+.+.+.++..++.++.|+++|| +|||+.+..+..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 3444444455567777888899999975 89999999999999999999999999999999 699999888877766665
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.+..... .+...+ ...+.|++.+...+.......+.+++ . +.++..++..
T Consensus 285 ~~~~~~~-----------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~---~--~~~g~~~g~~ 334 (393)
T PRK09705 285 CGFIWLP-----------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ---P--AIAGKLVAFM 334 (393)
T ss_pred HHHHHcc-----------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCC---H--HHHHHHHHHH
Confidence 5443221 111112 22456788888777766666676642 1 2335678888
Q ss_pred HHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccce
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+...+++..++|.+.+++.+..| |...|.+..+..++..+......++
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999998876 7788877766666655554544444
No 130
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.20 E-value=2.5e-10 Score=122.70 Aligned_cols=176 Identities=13% Similarity=0.028 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCC--------chhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMK--------SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s--------~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
.++..++..........+++.|+. +.|.+ .+..+.+.+...+...++.++.|+++|| +|||+++..+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~ 290 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 333444444444445567788875 45544 3566888999999999999999999999 6999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++..+...... +..+.+.+++..++.|++.+...++...++.|.+|+ +.+++
T Consensus 291 ~~v~~~l~~~~~~--------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~------~~~g~ 344 (418)
T TIGR00889 291 WALRFGFFAYGDP--------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV------HIRAS 344 (418)
T ss_pred HHHHHHHHHHcCc--------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHH
Confidence 8777655554311 002345677789999999998888888899998863 33456
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 181 FFNWYY-FTFTFAMMISLTVIVYVQSD------VSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 181 ~~~~~~-~~~~~g~~i~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
.+++.+ ....+|.++||.++|++.+. +||+..|.+.++..++..+++.+..+
T Consensus 345 ~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 345 AQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788886 56789999999999999876 46999998877766666555544444
No 131
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.19 E-value=2.5e-10 Score=118.05 Aligned_cols=166 Identities=21% Similarity=0.262 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchh-HHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYK-TLGFASVASFLGMLVLS 109 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~-~l~~~~~~~~i~~~~~~ 109 (588)
+..++..........+++.|+++.+|.+..+.+.+.....++..++.++.|+++|| +|||+ .+..+.++..++.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHH
Confidence 34445555566677788889888889999999999999999999999999999999 69999 88888888887777666
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.. .+.+..++..++.|++.+...+...+++.|..|+ +.++..++..+...
T Consensus 261 ~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 310 (352)
T cd06174 261 LA------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPP------EARGTASGLFNTFG 310 (352)
T ss_pred Hh------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH------HHHHHHHHHHHHHH
Confidence 54 2356678889999999999999999999998863 33456788999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++|..+++.+.+++.+..+|+..+.+..+..+++.++.
T Consensus 311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999988999999998887776665543
No 132
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.18 E-value=3.9e-10 Score=120.21 Aligned_cols=165 Identities=12% Similarity=0.014 Sum_probs=120.4
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCch---hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSI---TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
+..........++++.|+.+..+.... ..+.+..+..++..++.++.|+++|| +|||+.+..+.++..++.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence 333444445566778887765442222 23555666777888899999999999 69999998887776665554444
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
. .+.+.+++.+++.|++.+...+...+++.+..+++ .++..++.++...+
T Consensus 308 ~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~ 357 (408)
T PRK09874 308 V------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRD 357 (408)
T ss_pred h------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHH
Confidence 3 23456777888999999998888888777765432 22356788888899
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 191 FAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|..+||.+++.+.+.+||++.|++.+++.+++.++.+.
T Consensus 358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877776665443
No 133
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.18 E-value=2e-10 Score=123.30 Aligned_cols=160 Identities=8% Similarity=-0.009 Sum_probs=119.4
Q ss_pred HHhhhhhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007827 38 LGTTGTSSNLLVYLTTIF---NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAI 114 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~ 114 (588)
..+......++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++|| +|||+.+..+.++..++.++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~--- 312 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFA--- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhc---
Confidence 333334455777776543 5677788899999999999999999999999 699999988888887777666654
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH-HHHHHHHHH
Q 007827 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAM 193 (588)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 193 (588)
.+++.+++.+++.+++.+...+....++.+.++++ .+ +..++. ++....+|.
T Consensus 313 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~----~~--a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 313 ---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR----LS--ATIYLVGFQFAKQLGA 365 (420)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc----ce--eeeeeehHHHHHHHHH
Confidence 24566778888889888877777778888888642 11 223333 455678999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+++|.+.|++.+.+||+..|.+.++..++..++.+
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987766655544433
No 134
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.17 E-value=1.3e-08 Score=105.27 Aligned_cols=129 Identities=12% Similarity=-0.040 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHhcCC---Cc----hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHH-HHHHHHHHHHHHHHhhcc
Q 007827 43 TSSNLLVYLTTIFNM---KS----ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGF-ASVASFLGMLVLSLTAAI 114 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~---s~----~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~-~~~~~~i~~~~~~~~~~~ 114 (588)
+....|+|+++..+- ++ ...+...++..+..++.+|+.|.++|+ .|+||-.+. ..++..+.+..++....
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 346788888876544 33 334566788888999999999999999 587765543 33344445555555421
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHH
Q 007827 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM 194 (588)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 194 (588)
..+++...+...+..++..+......+++.|..++++..+. .+.-+....+|+.
T Consensus 112 --------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ri------S~lg~~~gylgs~ 165 (438)
T COG2270 112 --------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRI------SGLGWALGYLGSV 165 (438)
T ss_pred --------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcc------cccccccccccch
Confidence 13456667777788899999888899999998876544443 2223334556666
Q ss_pred HHHHH
Q 007827 195 ISLTV 199 (588)
Q Consensus 195 i~~~i 199 (588)
+.-++
T Consensus 166 i~li~ 170 (438)
T COG2270 166 ILLIF 170 (438)
T ss_pred HHHHH
Confidence 54443
No 135
>PRK03545 putative arabinose transporter; Provisional
Probab=99.17 E-value=1.1e-09 Score=116.41 Aligned_cols=170 Identities=12% Similarity=-0.072 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
....++.....++...+++.|+++.+|.|..+++++.....++..+++++.|+++|| +|||+.+ .+..+..++.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~ 288 (390)
T PRK03545 211 YLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLL 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHH
Confidence 334444445555666778889888899999999999999999999999999999999 6987654 44433333333222
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
... .+.+.+++..++.|++.+...+...+.+.+..|+ .++.+.+.+....
T Consensus 289 ~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~ 338 (390)
T PRK03545 289 PAA-----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIF 338 (390)
T ss_pred HHh-----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHH
Confidence 211 2455666778888888877766666777766531 1235678778888
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
++|..+||.++|++.+.+|++..|+..+++.+++++......
T Consensus 339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998887777777655443
No 136
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.17 E-value=8.8e-10 Score=120.89 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=108.8
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
....++|.|+++++|++..+++++.+...++..++.+++|+++|| +|||+.++.+.++..++.++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 356789999988999999999999999999999999999999999 69999988776655554433322211
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.+...+..++.+.......+..++++.|.+|++ .+++.+++++...++|+.++|.+++
T Consensus 364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHH
Confidence 22333334444443333334556677888888642 2245688888888999999999999
Q ss_pred HhccccchhhHHHHHHH
Q 007827 202 YVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~ 218 (588)
++.+.+||+..+.....
T Consensus 424 ~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 424 LIAQRLDLGTALASLSF 440 (496)
T ss_pred HHhccCChHHHHHHHHH
Confidence 99999999887765443
No 137
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.17 E-value=2.3e-09 Score=110.37 Aligned_cols=81 Identities=6% Similarity=-0.149 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc---------
Q 007827 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------- 206 (588)
Q Consensus 136 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~--------- 206 (588)
.++..++++.+++|.|.+...+..++++++.-++++.. +..++...+..+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~------~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAA------SRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHH------HHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 46788999999999999999999999999988654333 348888899999999999999977632
Q ss_pred -------cchhhHHHHHHHHHHH
Q 007827 207 -------VSWAWGLGIPAFMMFL 222 (588)
Q Consensus 207 -------~g~~~~~~~~~~~~~~ 222 (588)
.+|+++|++.++..++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 3688998865544333
No 138
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.16 E-value=1.2e-10 Score=103.61 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 007827 66 INIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL 145 (588)
Q Consensus 66 ~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (588)
.+.+.++..++.++.|+++|| +|||+.+..+.....++.+..... .+.+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 58 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS------------------------SNITVLIIAR 58 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh------------------------ccHHHHHHHH
Confidence 345667888999999999999 699999998888877777666554 2456778889
Q ss_pred HHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 146 GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 146 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
++.|++.+...+...+++.|.++++ .++...+..+...++|..++|.+.+.+.+..+|++.+++.....++..+
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 59 FLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 9999999998898999999988642 2235688888899999999999999999888999998887766655555
Q ss_pred HHHh
Q 007827 226 MFFL 229 (588)
Q Consensus 226 ~~~~ 229 (588)
....
T Consensus 133 ~~~~ 136 (141)
T TIGR00880 133 LLAF 136 (141)
T ss_pred HHhh
Confidence 4443
No 139
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.15 E-value=4.6e-10 Score=127.32 Aligned_cols=134 Identities=11% Similarity=0.017 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 007827 64 TLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFT 143 (588)
Q Consensus 64 ~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (588)
....+..++..++.+++|+++|| +|||++++++.++.+++.+++.+.. +...+++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~------------------------s~~~ll~ 653 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN------------------------SESAMIA 653 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc------------------------cHHHHHH
Confidence 33556668888999999999999 7999999999888888777766652 2344566
Q ss_pred HHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 144 GLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 144 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
.+++.+++.++..+...++++|++|+ +.|++++++.+....+|++++|.+++++... +...+|++.+++.+++
T Consensus 654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 654 LLCLFGGLSIAAWNALDVLTVELYPS------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 67777887777888889999999974 2245789999999999999999999987664 4566777766666555
Q ss_pred HHHHHh
Q 007827 224 CAMFFL 229 (588)
Q Consensus 224 ~~~~~~ 229 (588)
.++..+
T Consensus 727 ~ll~~~ 732 (742)
T TIGR01299 727 GLLALK 732 (742)
T ss_pred HHHHHh
Confidence 554443
No 140
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.15 E-value=4.8e-12 Score=138.98 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=3.0
Q ss_pred HHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccC
Q 007827 38 LGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKL 117 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 117 (588)
....++......-+++.|+++++++|++.+.+.++..+..++..+..+| --|-|.+-++.++.++|.+++++-..+..-
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 4445555555667788999999999999999999999999999999999 467678888888899998887764322211
Q ss_pred C---------------CCCC----------CCCCCCCC-CCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC
Q 007827 118 H---------------PPDC----------GNQDSGAC-PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT 171 (588)
Q Consensus 118 ~---------------~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 171 (588)
. ...| ++++...+ .......+.+++++.++.|+|....++...+|+=|..++++
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 1 1112 00000011 11112235778899999999999999999999998776422
Q ss_pred CCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc---------------------cc-hhhHHHHHHHHHHHHHHHHHh
Q 007827 172 ESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD---------------------VS-WAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~ 229 (588)
-....++++....+|.++|.++++.+.+. .| |+..|.+.+++.++..+-++.
T Consensus 175 ------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 175 ------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23568888888899999998888765321 23 777777776666655555555
Q ss_pred ccceeec
Q 007827 230 GSRLYAK 236 (588)
Q Consensus 230 ~~~~~~~ 236 (588)
.+++.++
T Consensus 249 FPk~lp~ 255 (539)
T PF03137_consen 249 FPKKLPG 255 (539)
T ss_dssp -------
T ss_pred CCccCCC
Confidence 5555444
No 141
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.14 E-value=8.4e-10 Score=117.34 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=132.3
Q ss_pred ccccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccc-hhHH
Q 007827 17 QLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTT-IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGR-YKTL 94 (588)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-r~~l 94 (588)
+..+.+||.+++..+..+.....+..+....=+|+++ +.+.+.+..|+++++..++.++.+|+.|+-+.| .|+ |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCH
Confidence 4557789999998888888888887777777788865 588999999999999999999999999999999 585 6677
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCC
Q 007827 95 GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESG 174 (588)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (588)
+.+.++.++|.++.......|+ ..-+.++++|++.|+|.|.... .-+|+++.-.. +.|
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~--~dR 163 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGNFAV-LRAYIADASTV--EDR 163 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCcccHHH-HHHHHHhccCc--cch
Confidence 7888888888887733332221 2567889999999999887543 56777774332 222
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhc----cc---------cchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 175 KQGITSFFNWYYFTFTFAMMISLTVIVYVQ----SD---------VSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 175 ~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~----~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
. ++++....+..+|..+||.+...+. .. .-+..+-|+.+++.++.++++.+..++
T Consensus 164 ~----rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 164 P----RAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred H----HHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 2 3455444455666666666654332 11 113455566666666666555544343
No 142
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.12 E-value=7.6e-10 Score=118.08 Aligned_cols=165 Identities=10% Similarity=-0.089 Sum_probs=120.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
..++.....+....++|.|++ +.|++..+.+.+.....++..++.++.|+++|| +|||+.+..+.+...++.+.....
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~ 305 (406)
T PRK11551 228 SYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAA 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444556667778888886 479999999999999999999999999999999 699999887666555554444332
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
.+.+.+.+..++.|++.++..+...++..|.+|+++ ++...++.+....+
T Consensus 306 ------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~ 355 (406)
T PRK11551 306 ------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRL 355 (406)
T ss_pred ------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhH
Confidence 123445556667787777777778888899886422 34568888889999
Q ss_pred HHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHH
Q 007827 192 AMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 192 g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 228 (588)
|..++|.++|++.+.. +|...+++.....+++.++.+
T Consensus 356 g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 356 GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 455666555554444444433
No 143
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.12 E-value=4.1e-08 Score=105.77 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=114.8
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc--c--cchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY--F--GRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~--~--Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
....|+++++|+++.+...+.+...+-. ...++.|.++|-+ + .||+-++++.++.+++...+++....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 3456888999999999988777776665 6678889999994 1 25555666666665555555443210
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
..+.....+..++..+|....-.++.+++.|....+.. .++...+..+.+..+|+.++..++|
T Consensus 83 -------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 83 -------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred -------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 02334455566777888888888888999988743221 1567788888899999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
.+.+..+++..|.+..++.++..+...+..+
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 9999999999998887766665544444333
No 144
>PRK12382 putative transporter; Provisional
Probab=99.12 E-value=9.7e-10 Score=116.80 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=122.8
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007827 36 EKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAIS 115 (588)
Q Consensus 36 ~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 115 (588)
....+..+..+.+.|+++ .|++. .+.....+.++..+++++.|++.|| +||||.+..+.++..++.++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~---- 299 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLA---- 299 (392)
T ss_pred HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHc----
Confidence 344555666777888764 56653 4556667778888999999999999 799999988888777776655543
Q ss_pred cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHH
Q 007827 116 KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI 195 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 195 (588)
.+.+.++++.++.|++.+...+...+.+.|.+++ +.++..+++++...++|..+
T Consensus 300 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 300 --------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPS------QVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHH
Confidence 2345567788888999988888777777887752 23456788999999999999
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 196 SLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 196 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|.+.+++.++.||+..|.+.+++.++++++.+.
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888777776665543
No 145
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.11 E-value=7.2e-10 Score=120.35 Aligned_cols=174 Identities=11% Similarity=0.023 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc--cchhHH-HHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF--GRYKTL-GFASVASF 102 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grr~~l-~~~~~~~~ 102 (588)
.+...+..++.....++...++|.|+++.+|++..+++.+...+.++..++.+++|+++|| + |||+.. .....+..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHH
Confidence 4445555566666778888899999999899999999999889999999999999999999 6 445432 22222223
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+...+... .+....++..++.|.+..........+..|.+|+ +.+++..
T Consensus 334 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~ 385 (452)
T PRK11273 334 IATIVYWLNPA----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 385 (452)
T ss_pred HHHHHHHHhcc----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh------hhhhhHH
Confidence 33322222110 1223333344444443322222223445677753 2234567
Q ss_pred hHHHHHHHHHHHH-HHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMI-SLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 183 ~~~~~~~~~g~~i-~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++.+...++|+.+ +|.+.+++.+..||+..|++..+..+++++...
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8777777887654 799999999999999999887776666655443
No 146
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.11 E-value=3e-09 Score=110.64 Aligned_cols=178 Identities=15% Similarity=0.068 Sum_probs=138.5
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.++...+..++...+.|...+++.+|+++..|+|....+++...+.++..++..++|+++|| +.|+++.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 345556677777888888899999999999999999999999999999999999999999999 788888888777777
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
..+.+.+.. .+.+..++..++.|+..+..........++..| +......+
T Consensus 289 ~~l~l~~~~-----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-------~~~~~a~s 338 (394)
T COG2814 289 ALLALTFTG-----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-------DAADLAGS 338 (394)
T ss_pred HHHHHHHhc-----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-------CchHHHHH
Confidence 666665543 244556666666777666554444444444222 22235677
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
++....|+|..+|..++|.+.+++|+....++.+++.++++++.+...+.
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999998888887776654443
No 147
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.11 E-value=1.4e-09 Score=115.25 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=114.0
Q ss_pred HHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccC
Q 007827 38 LGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKL 117 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 117 (588)
+.+.....++|.|+++ .|.+..+.+.+.+...++..+++++.|+++|| +|||+.+..+..+..++..... ..
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~~----- 285 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-SQ----- 285 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-hh-----
Confidence 3444455678888864 69999999999999999999999999999999 6999998887777666544332 10
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHH
Q 007827 118 HPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL 197 (588)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 197 (588)
.......++.|++.+...|...+.+.|..++ .+ .+...+.+....++|.+++|
T Consensus 286 ---------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~---~~---~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 286 ---------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEH---HE---LVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred ---------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH---HH---HHHHHHHHHHHHHHHHHHHH
Confidence 1223455667777777778888888887753 11 12345566667899999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 198 TVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 198 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
.++|++.+++||++.|.+.+...++..+.
T Consensus 339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 339 SFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999999999999998877666554433
No 148
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.10 E-value=1.3e-09 Score=114.51 Aligned_cols=175 Identities=14% Similarity=0.032 Sum_probs=120.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHH-HHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-FASVASFL 103 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~-~~~~~~~i 103 (588)
..+...+..++.....+.+..+++.|+++.+|.+..+.+++.....++..++.+++|+++|| +|||+... .......+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHH
Confidence 34445556666677777788899999999999999999999999999999999999999999 69996211 11111111
Q ss_pred HHH---HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 104 GML---VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 104 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
+.+ +....... .......+....+.+.+.+ ..+...+++.|.+|+ +.++.
T Consensus 295 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~g~ 347 (399)
T TIGR00893 295 AGLVLSLLMFATNY--------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPG------NIAGL 347 (399)
T ss_pred HHHHHHHHHHHhcc--------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh------hHHHH
Confidence 111 11111100 0122333333333344444 678888999998863 22346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 227 (588)
.+++.+...++|..++|.+.+++.+..| |+..|.+.++..+++.++.
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 7888888999999999999999999888 9999888777666655543
No 149
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.10 E-value=2.7e-09 Score=114.03 Aligned_cols=175 Identities=12% Similarity=0.013 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHH-HHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-FASVASFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~-~~~~~~~i~ 104 (588)
.+...+..++...++++...++|.|++ ++|++..+.+.+.....++..++.++.|+++|| +|||+.+. .+.+...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHH
Confidence 344455566667778888889999985 589999999999999999999999999999999 69998764 233333333
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
...+...... ...+.+..++..++.|++.+...+ ..+.+.|..| + .++..+++
T Consensus 302 ~~~l~~~~~~-------------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~----~---~~g~~~g~ 354 (402)
T TIGR00897 302 TLALYYIPQH-------------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP----K---HKGAAMSV 354 (402)
T ss_pred HHHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc----c---hhHHHHHH
Confidence 3232222100 002345556677777877776544 3445555432 1 23577899
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+...++|..++|.+++++.+.+||...+++.++..+++.++..+
T Consensus 355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887776666555443
No 150
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.10 E-value=8.7e-10 Score=119.81 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc-ccchhHHHHHH--HHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY-FGRYKTLGFAS--VASF 102 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~-~Grr~~l~~~~--~~~~ 102 (588)
.+......++..++++....+++.|++ ++|++..+++.+.+...++..++.+++|+++||+ +++|+...++. +...
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 344444455566677777888999986 5799999999999999999999999999999972 13333333322 2222
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++... .+.+.+++.+++.|++.+...++..+++.|.++++ .++..+
T Consensus 322 l~~ll~~~~------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~ 371 (455)
T TIGR00892 322 LTHLLCALA------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAV 371 (455)
T ss_pred HHHHHHHHh------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHH
Confidence 333333332 24566778899999999999898899999988642 234568
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 226 (588)
++++...++|..++|.++|++.+.. +|++.|++.++..+++.+.
T Consensus 372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 8889999999999999999998877 5999998877766555543
No 151
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.3e-09 Score=112.35 Aligned_cols=186 Identities=16% Similarity=0.041 Sum_probs=136.2
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
-++.|.+-+..+...-++-++..++|.|+++++|.+..+++.+...+.....+..+++|+|||| +|.+|++.+..+.++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence 3566777777777777788889999999999999999999999999999999999999999999 699999988888888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.....+..+.. .+.++.-.....++...+..|+|.|. ...++...|++ ..+...
T Consensus 296 ~~~~~l~~~~~~~-------------~~~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~-------~~G~v~ 351 (417)
T COG2223 296 LAAALLSLFLTGF-------------GHGGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFPK-------ETGAVT 351 (417)
T ss_pred HHHHHHHcccccc-------------ccCcchHHHHHHHHHHHHHhccCcch----heeechHHHHh-------hhhHHH
Confidence 8777766642100 01111112223334444444555554 55556666642 234567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccce
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
++.....++|+..-|...+...+..| +...|++.....+.+.++.+..+.+
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888889999888888888887777 8899988877777777665554443
No 152
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.08 E-value=2.2e-09 Score=113.78 Aligned_cols=168 Identities=9% Similarity=-0.037 Sum_probs=131.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..+...+..++.........++.+.|++ ++|.++.+.|.+.+...++..++.++.|++.|| +|+|+.+.++.+...+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHH
Confidence 3444445555666677777889999996 589999999999999999999999999999999 69999999999998888
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
..+.... .+.+.+++...+.|++.+...+....++.+. |+ .. ++.+.+.
T Consensus 284 ~~~~~~~------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~---~~---~~~~q~~ 332 (382)
T TIGR00902 284 WAIIGAI------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG---SE---IAKLQAL 332 (382)
T ss_pred HHHHHhH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH---hh---HHHHHHH
Confidence 7777654 4567788889999999999999988888875 53 11 2345665
Q ss_pred HH-HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 185 YY-FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 185 ~~-~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
++ ....+|.++++.++|++.+++|+ ..|.+.++..++++++
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 54 35679999999999999999886 5566666655555443
No 153
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.08 E-value=1.1e-09 Score=116.14 Aligned_cols=153 Identities=15% Similarity=0.098 Sum_probs=115.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
..+.+...+....++|.|+++++|++..+.+++.....++..++.+++|+++|| +|||+.+..+.++..+.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (405)
T TIGR00891 247 VLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAIG 325 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHhC
Confidence 334444555667788999999999999999999999999999999999999999 6999998877765433222221111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA 192 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 192 (588)
.+.+.+.++.++.+++.+...+..++++.|.+|++ .++..+++.+...++|
T Consensus 326 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g 376 (405)
T TIGR00891 326 -----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGNLG 376 (405)
T ss_pred -----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHHHH
Confidence 23344555656667777777777888889988642 2345688888899999
Q ss_pred HHHHHHHHHHhccccc-hhhHHHH
Q 007827 193 MMISLTVIVYVQSDVS-WAWGLGI 215 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g-~~~~~~~ 215 (588)
..++|.+.|++.+..| |+..+..
T Consensus 377 ~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 377 GALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999888 8776554
No 154
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.08 E-value=2.2e-09 Score=116.49 Aligned_cols=186 Identities=14% Similarity=0.120 Sum_probs=143.4
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch--hHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY--KTLGFASV 99 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr--~~l~~~~~ 99 (588)
+.|.+....+..++.+-+...+......|.++++|++..+...+..+..+...++++++|++.|| +|.| ++++.+++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 33455554555566666777888899999999999999999999999999999999999999999 7999 88888777
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.+..+...+.. .+.. ....+.+.+++.-++.|+..|..++..-++.+++.|+.++ +
T Consensus 358 ~~~~i~~~g~~G~-~~~~---------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e------~ 415 (477)
T PF11700_consen 358 LWIIIPLYGLFGF-WPSF---------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE------A 415 (477)
T ss_pred HHHHHHHHHHHHh-hhcc---------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh------h
Confidence 6644333322210 0000 0013456678888899999999999999999999985332 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhc
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
..|+++.......+.+||.+.+.+.+..| .|+++....++.+++++++...
T Consensus 416 efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 416 EFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999999988776 8888887777777777766543
No 155
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.08 E-value=1.7e-09 Score=116.88 Aligned_cols=173 Identities=9% Similarity=-0.027 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc--chhHH-HHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG--RYKTL-GFASVASFL 103 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G--rr~~l-~~~~~~~~i 103 (588)
+.+.+..++....++++..++|.|+++++|++..+++...+.+.++..++.+++|+++|| ++ +|+.. ....+...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~~ 324 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHHH
Confidence 333344444555566677899999988899999999999999999999999999999999 63 23332 222111111
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
.......... .+.....+..+..|++.............|.+++ +.++...+
T Consensus 325 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g 376 (434)
T PRK11663 325 SVGSLWLMPF----------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK------EAAGAATG 376 (434)
T ss_pred HHHHHHHccc----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH------hhHHhHHH
Confidence 1111111111 1122222333333433222112223445676642 23457788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+.+...++|++++|.+.+++.+..||+..|++.++..+++.+...
T Consensus 377 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 377 FVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999887776666554443
No 156
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.08 E-value=2.3e-09 Score=115.03 Aligned_cols=159 Identities=9% Similarity=0.027 Sum_probs=123.6
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
..++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++|| .++++.+..+.++.+++.++..+.
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc--------
Confidence 34566788999988899999999999999999999999999999999 588888888777776666555443
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+....+++.++.|++.+...+...+++.|.+|+ +.++..+++++...++|..+||.+
T Consensus 310 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 310 ----------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPD------EMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHHHhhhHhHHHHH
Confidence 2345566777888888877777777888888763 234567888888899999999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.|++.+.+|++..+.+.++..++..++...
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999888887766554444443333
No 157
>PRK15075 citrate-proton symporter; Provisional
Probab=99.05 E-value=2.7e-09 Score=115.16 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=101.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH-HHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML-VLSL 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~-~~~~ 110 (588)
..++....++.+..++|.|+++.+|++..+++++.....++..++.+++|+++|| +||||.++.+.++.++... ....
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677788899999998899999999998888889999999999999999 6999988776544332221 1111
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
... ..+.........+.+++.+...+...+++.|.+|++.+ +.+.++.+...+
T Consensus 325 ~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~r------g~~~g~~~~~~~ 377 (434)
T PRK15075 325 LVA---------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVR------TAGFSLAYSLAT 377 (434)
T ss_pred HHc---------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCcc------chheeHHHHHHH
Confidence 110 01222233334445566666666666788899875321 234555444344
Q ss_pred -HHHHHHHHHHHHhccccchh
Q 007827 191 -FAMMISLTVIVYVQSDVSWA 210 (588)
Q Consensus 191 -~g~~i~~~i~~~~~~~~g~~ 210 (588)
+++.++|.+.+++.+..|++
T Consensus 378 ~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHhhhHHHHHHHHHHhcCCc
Confidence 45777999999998887753
No 158
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.05 E-value=3.7e-09 Score=115.99 Aligned_cols=172 Identities=10% Similarity=-0.016 Sum_probs=117.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHH-HHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLIN-IFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
.++.....+....+.+.|+.+++|+|..+.+.+.. ...++..++.+++|+++|| +|||+.+.++.++.++..+.....
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677888988889999999999874 5568999999999999999 699998877666555444332221
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
... ..+...+....++..++.|...+...++..+..+++.+ +..+++.+...++
T Consensus 310 ~~~--------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~------~t~~gl~~s~~~l 363 (491)
T PRK11010 310 SIT--------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFS------ATQFALLSALSAV 363 (491)
T ss_pred Hhc--------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHHH
Confidence 100 01233334444554444444444456666666653222 3458888888899
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007827 192 AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 192 g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
|..+++.+.|++.+.+||+..|.+..++.++++++....+
T Consensus 364 g~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 364 GRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998889999999999999999988887777766655543
No 159
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.04 E-value=3.1e-07 Score=98.85 Aligned_cols=158 Identities=22% Similarity=0.165 Sum_probs=108.8
Q ss_pred hhhhhhHHHHHHHhcCCCchhh-hHHHH----HHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007827 41 TGTSSNLLVYLTTIFNMKSITA-TTLIN----IFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAIS 115 (588)
Q Consensus 41 ~~~~~~l~~yl~~~~g~s~~~~-~~~~~----~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 115 (588)
+........+.....+.+.... +.... ...+...+.++.-|.++|| +|||..+........+..+...+.
T Consensus 38 ~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~---- 112 (463)
T KOG2816|consen 38 STVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQ---- 112 (463)
T ss_pred CcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHH----
Confidence 3334455555555444443332 22233 3357788999999999999 599999999888887777666654
Q ss_pred cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHh--hcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 116 KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI--GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.++ +++ +.++ +.++..+...++++|...+ +.|...+++.+.....+.
T Consensus 113 ---------------------~~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~------~~R~~~~gll~~~~~~~~ 161 (463)
T KOG2816|consen 113 ---------------------GYW-FFL---LLGLSGGFSAIFSVGFAYVADISSE------EERSSSIGLLSGTFGAGL 161 (463)
T ss_pred ---------------------HHH-Hhh---hcccccchhhhhhhhhhheeeccch------hHHHHHHHHHHHHHHHHH
Confidence 122 222 3332 3444455677888887653 344577888888888999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcccee
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 234 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
.++|.+++++....|....|.+..+..++..+...+..|+.
T Consensus 162 ~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 162 VIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999998888877777666555553
No 160
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.02 E-value=6e-09 Score=112.66 Aligned_cols=169 Identities=12% Similarity=-0.020 Sum_probs=113.0
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
...+.+ ++.+++|++..+.++......++..++.+++|+++|| +|||+.+..++++.+++.+++.+...... .
T Consensus 303 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 375 (481)
T TIGR00879 303 IMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV--T--- 375 (481)
T ss_pred hHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc--C---
Confidence 334444 4446789999889999999999999999999999999 69999999888777777666553211000 0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
+ .+.+ .+...+....++.+.......+....++.|.+|+ +.++...+..+...++|.+++|.+.++
T Consensus 376 -~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 376 -G------SSKS-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL------SLRPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred -C------cccc-hhHHHHHHHHHHHHHHHccccCeehhhhhccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0222222222222222223345566777888863 223467888888999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
+.++.+|++.|++.+++.+++.++..+..+
T Consensus 442 ~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 442 MLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 988889999998877776666655544333
No 161
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.02 E-value=4.6e-09 Score=114.82 Aligned_cols=171 Identities=14% Similarity=0.023 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhH----HHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKT----LGFASVASFLGM 105 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~----l~~~~~~~~i~~ 105 (588)
.+..++.....+....++|.|+.+++|++..+++.+.+...++..++.+++|+++|| +|||+. .....+...++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~ 336 (476)
T PLN00028 258 ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGG 336 (476)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHH
Confidence 333333444445667788999988899999999999999999999999999999999 687621 111111111111
Q ss_pred H-HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 106 L-VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
+ .+.+... .+.+...+..++.+++.+...+...++..+..+ +.++...++
T Consensus 337 i~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 387 (476)
T PLN00028 337 VFCIWLGRA----------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-------RSLGVISGL 387 (476)
T ss_pred HHHHHhccc----------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-------hhchhhhhh
Confidence 1 1111110 123334444445555544444444555555432 233456776
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
.+.+.++|+.++|.+.+ .....+|+..|++.++..+++.++.++.+
T Consensus 388 ~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 388 TGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 66666666666665543 22335699999888777777766655543
No 162
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.00 E-value=5.1e-09 Score=107.81 Aligned_cols=146 Identities=10% Similarity=0.044 Sum_probs=112.0
Q ss_pred HhhhhhhhHHHHHHHh--cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 007827 39 GTTGTSSNLLVYLTTI--FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 116 (588)
Q Consensus 39 ~~~~~~~~l~~yl~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 116 (588)
.-.++..+++.|+++. +|+++.+++...+.+..+..++.+++++++|| +|+||.+.++.++.+++.++.....
T Consensus 155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~---- 229 (310)
T TIGR01272 155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH---- 229 (310)
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 4446778899999853 79999999999999999999999999999999 7999998888777776654444321
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 117 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
+. ....+..+.|++.+..+|+..+...+.++++ ..+ +.++. ....+|+++.
T Consensus 230 --------------------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~---~~~----asai~-~~~~~Gg~i~ 280 (310)
T TIGR01272 230 --------------------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRH---TSQ----GSGIL-CLAIVGGAIV 280 (310)
T ss_pred --------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhh----hHHHH-HHHHhcchHH
Confidence 11 1223555789999999999999888877631 111 22332 4667899999
Q ss_pred HHHHHHhccccchhhHHHHHHH
Q 007827 197 LTVIVYVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 197 ~~i~~~~~~~~g~~~~~~~~~~ 218 (588)
|.+.|.+.+..|.+.+|++..+
T Consensus 281 P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 281 PLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHhccchHHHHHHHH
Confidence 9999999998999888875544
No 163
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.99 E-value=1.1e-08 Score=108.52 Aligned_cols=162 Identities=11% Similarity=0.027 Sum_probs=109.1
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
++...+.+....+++.|+.+.+|+++.+.+.+.+...++..++.++.|+++|| +|+|+.+..+.++..++.++.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~- 286 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFG- 286 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHH-
Confidence 33344444555677888888899999999999999999999999999999999 6999999888777776665443321
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.+.+..++..++.+++.+...++......+..+ +.+.. + .+..+...++|.
T Consensus 287 ----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~--~--~~~~~~~~~~g~ 337 (382)
T PRK10091 287 ----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAK---GGELL--G--AAGGQIAFNLGS 337 (382)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC---cchHH--H--HHHHHHHHHHHH
Confidence 122334444555555554444433333333322 22221 2 222345678999
Q ss_pred HHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSD-VSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 194 ~i~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 226 (588)
.+||.++|++.+. .+|++.+.+.++..++.+..
T Consensus 338 ~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 338 AIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 9999999998874 68999888876655554443
No 164
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.96 E-value=1.3e-08 Score=109.88 Aligned_cols=167 Identities=11% Similarity=-0.064 Sum_probs=101.6
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH-hhc
Q 007827 35 FEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL-TAA 113 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~-~~~ 113 (588)
+....+|+...++|.|+++++|++..+.+...+...++..+++++.|+++|| +|||+.+..+.++.++....... ...
T Consensus 254 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~ 332 (432)
T PRK10406 254 AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQN 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466788888999999998899999999988888888888999999999999 69999887765544333222211 110
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH-H
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF-A 192 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 192 (588)
. .+....+....+..++.+...+...++.+|.+|++. |+.++++.+...++ +
T Consensus 333 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~ 385 (432)
T PRK10406 333 V---------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALF 385 (432)
T ss_pred C---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHH
Confidence 0 111211111222223333333446677899997422 23456766655443 3
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+..+|.+.+.+.....|...+++.++..+++++..++
T Consensus 386 g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 386 GGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4447777776643323555555554544444444333
No 165
>PRK10504 putative transporter; Provisional
Probab=98.95 E-value=1.5e-08 Score=110.49 Aligned_cols=156 Identities=12% Similarity=-0.005 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
........++...++.....+.|.|++..+|.++.+++++.....++..++.++.|+++|| +|||+++..+.++..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence 3344445555556655556678888888899999999999988888888899999999999 699999988888777665
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.++..... ..+...+.+..++.|++.+...+....+..+.+|++ .++..+++.
T Consensus 342 ~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~ 394 (471)
T PRK10504 342 LLFMLVAL---------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLL 394 (471)
T ss_pred HHHHhccc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHH
Confidence 55544311 012333445566777888877777788888877642 234568888
Q ss_pred HHHHHHHHHHHHHHHHHhccccch
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+....+|..+|+.+++.+.+..|+
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999887666554
No 166
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.94 E-value=9.9e-09 Score=110.95 Aligned_cols=178 Identities=10% Similarity=-0.029 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH-
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG- 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~- 104 (588)
.+...+..++.....+++..++|.|+++..|+|..+++++...+.+...++.+++|+++|| +|+++....+.....+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHH
Confidence 3444445555566677888899999998899999999999999999999999999999999 67544323333222211
Q ss_pred --HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 105 --MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
.+.+..... .+.+......++.|++.............|.+|+ +.++.+.
T Consensus 332 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~ 383 (438)
T TIGR00712 332 IAVIVYWMNPA----------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 383 (438)
T ss_pred HHHHHHHhcCC----------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh------hheeeeh
Confidence 111111100 1222233333444443222212122345677753 2223567
Q ss_pred hHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 183 NWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 183 ~~~~~~~~~g~-~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
++.+...++|+ +++|.+.|.+.+..||...|++..+..+++++..++..+
T Consensus 384 g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 384 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777764 689999999999899999988877666666655554433
No 167
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.92 E-value=3.3e-08 Score=104.84 Aligned_cols=165 Identities=8% Similarity=-0.033 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+...+..++....+.....+++.|++ +.|.+..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++..++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHH
Confidence 333344444445555666778888985 589999999999998889999999999999999 699999988888877766
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
++.... ++.+.+++..++.|++.+...+....++.+. + +.+. +...+.+
T Consensus 285 ~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~---~~~~---~~~~~~~ 333 (382)
T PRK11128 285 GLMGST------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-P---GSEV---IRLQALY 333 (382)
T ss_pred HHHHhh------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---Hhhh---HHHHHHH
Confidence 655543 3566778889999999998888777777765 2 2121 2345555
Q ss_pred H-HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 186 Y-FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 186 ~-~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
. ....+|..+||.++|++.+.+|+. .++..+++.++++
T Consensus 334 ~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 334 SALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 4 445678789999999999988874 5555555444443
No 168
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.91 E-value=5.3e-08 Score=104.04 Aligned_cols=163 Identities=13% Similarity=-0.037 Sum_probs=116.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
.+.....+......|.|+.+++|+++.+.++......++..++.++.|+++|| +|||+.+..+.++.+++..+..+...
T Consensus 225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~ 303 (406)
T PRK15402 225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATV 303 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556677888888899999999988887888888999999999999 69999998888877777766655421
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.. ..+...++++.++.|++.+...+......... + + +.++...+.++....+|.
T Consensus 304 ~~-------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~---~---~~~g~~~~~~~~~~~~~~ 357 (406)
T PRK15402 304 IS-------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-S---D---VSKGTVSAAMGMLSMLIF 357 (406)
T ss_pred cc-------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-c---c---ccccHHHHHHHHHHHHHH
Confidence 00 12455567788888998888776555544322 1 1 223456778888888999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
.+|+.+++.+.+..++....+...+..++.
T Consensus 358 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 358 TVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999888777665544444433333
No 169
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.91 E-value=3.9e-08 Score=105.66 Aligned_cols=186 Identities=11% Similarity=-0.022 Sum_probs=122.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
+.|.+.++.++...++.+...++|.|+++.+ +............+...+..|++|+|+|| +|+||++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence 4565556666666666667778999988765 33333333445667888999999999999 79999999988877776
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCC------------
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE------------ 172 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------------ 172 (588)
.....+.. |. .+..+.+.+.+..+.+.++.|.-.....-++.+.||+++.
T Consensus 330 ~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 330 SALLFLTL--PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHh--cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 64433331 10 0113445555555554555555555566667777763100
Q ss_pred ---CCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHHhcc
Q 007827 173 ---SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 173 ---~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
..++..+...++......+|+++-|.+.+...+.. ++...|+...+..++++++.+..+
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 11224677888888888998999998877776554 488888877777767766655543
No 170
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.90 E-value=7.8e-09 Score=111.35 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..+.+.+..++..+.++......+.|.+..++ +..+.+++.....++..++.++.|+++|| +|||+++..+.++.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 33444445555556655555555556655566 56667777888889999999999999999 69999999988887777
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhhh
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFFN 183 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 183 (588)
.+...+.. .+.+.+++..++.|++.+...+...++++|..+.++ +..++..+..++
T Consensus 301 ~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 301 YLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 66655431 234556667778889999888888999999876432 122334567888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccch
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+++....+|..+++.+.+++.+..||
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998876666
No 171
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.89 E-value=2.4e-08 Score=106.36 Aligned_cols=165 Identities=8% Similarity=0.013 Sum_probs=115.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIF---NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
..++....+.......+.|+++.+ +.+....+.+.+...+...++.+..|++.|| +|||+.+.++.++.+++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~ 301 (396)
T TIGR00882 223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGS 301 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHH
Confidence 333333444444456788887665 5566677888888888889999999999999 799999988888777766554
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH-HHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYF 187 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 187 (588)
... .+.+.+++..++.|++..........+..+..+ .+. .+...+. ++.
T Consensus 302 ~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~--~at~~~~~~~~ 351 (396)
T TIGR00882 302 SFA------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFD----VRL--SATIYLIGFQF 351 (396)
T ss_pred Hhc------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----cce--EEEeehHHHHH
Confidence 443 245566777888888765544444444555443 222 2233443 456
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 188 TFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
...+|+.+++.++|++.+.+||+.+|.+.++..++..++.
T Consensus 352 ~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 352 AKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998877766655543
No 172
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.88 E-value=4.2e-08 Score=106.83 Aligned_cols=176 Identities=14% Similarity=0.002 Sum_probs=114.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHH--------HH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTL--------GF 96 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l--------~~ 96 (588)
.++.+.+..++....++....++|.|+++.+|.+..+++++.....++..++.+++|+++|| +++|+.. ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHH
Confidence 34555666677777888888999999999999999999999999999999999999999999 5755321 11
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
+......+......... . .+....++...+.+.+.+...+.......|..| +
T Consensus 341 ~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~ 392 (465)
T TIGR00894 341 GIGGLGPGIFAYALPYL-S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-------R 392 (465)
T ss_pred HHHHHHHHHHHHHHHHc-C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-------h
Confidence 11111111111111100 0 122233334444445444444433333334332 2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHHHHHh
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQSD---VSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
..+...++.+...++|+.++|.+.+++.+. .+|+..|.+.++..+++.++..+
T Consensus 393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 456788888889999999999999988754 34888888877766666555443
No 173
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.87 E-value=3.5e-08 Score=105.95 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=100.6
Q ss_pred HhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCC
Q 007827 39 GTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLH 118 (588)
Q Consensus 39 ~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 118 (588)
..+.+..++|.|+++ .|.++.+.+.+.....++..++.++.|+++|| +|||+.+..+.++..+..++......
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 334466788888875 69999999999999999999999999999999 69999988887766554443332211
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHh--hcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 119 PPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI--GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
..... ....+.++ +..+..+..+.++.|.+|+ +.++.+.++.+...++|+.++
T Consensus 319 -----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 319 -----------------DNYLL--LGACLFGLMATNVGVGGLVPKFLYDYFPL------EVRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred -----------------ccHHH--HHHHHHHHHHhcccHhHHHHHHHHHhCcH------HHHhhhhhHHHHHHhHHHHHH
Confidence 11111 22223332 2233344556777888863 223456888888889999999
Q ss_pred HHHHHHhccccchhhHHH
Q 007827 197 LTVIVYVQSDVSWAWGLG 214 (588)
Q Consensus 197 ~~i~~~~~~~~g~~~~~~ 214 (588)
|.+.+++.+.+|+....+
T Consensus 374 p~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 374 SMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHHcccHHHHHH
Confidence 999999998888765433
No 174
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.87 E-value=2.4e-08 Score=104.60 Aligned_cols=152 Identities=12% Similarity=0.034 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc-chhHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG-RYKTLGFASVASFLGM 105 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-rr~~l~~~~~~~~i~~ 105 (588)
+.+.+...+....+++...++|.|+++ .|++..+.+.+.+...++..+++++.|+++|| +| ||+.+..+.++.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 200 WQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHH
Confidence 333444455566677788899999874 79999999999999999999999999999999 74 5666667777776666
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+.+..... +... ....+.|++.|...+...+.+.+..++ . +..+..+++.
T Consensus 278 ~~~~~~~~-----------------------~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~---~--~~~g~~~~~~ 327 (355)
T TIGR00896 278 CGLLFAPM-----------------------HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQ---A--AQAAALSAMA 327 (355)
T ss_pred HHHHHhhh-----------------------hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccC---H--HHHHHHHHHH
Confidence 55554321 1111 134677899998888777766655432 1 1223556777
Q ss_pred HHHHHHHHHHHHHHHHHhccccc-hh
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVS-WA 210 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g-~~ 210 (588)
+...++|..++|.+.|++.++.| |.
T Consensus 328 ~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 328 QSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 77788889999999999988765 44
No 175
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.87 E-value=4.4e-08 Score=95.41 Aligned_cols=179 Identities=8% Similarity=0.022 Sum_probs=124.9
Q ss_pred cccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 18 LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
.........|.+.+++++..+..+-....-+.++++.+|+|+..++.+.+.......+..|+.|.++|| .||+-..+.+
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~ 336 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVAS 336 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHH
Confidence 334445567777788888777777777888999999999999999999999999999999999999999 5999777666
Q ss_pred HHHH-HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 98 SVAS-FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 98 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
..+. .++-..+.++.. + -+.+..++|+..........+.++...|+ .
T Consensus 337 a~~~tl~~H~~l~Ft~l-----------------------s---Py~~m~~lGLsysllAcslWP~va~~vpE------~ 384 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFTFL-----------------------S---PYTSMTFLGLSYSLLACSLWPCVASLVPE------E 384 (459)
T ss_pred HHHHHHHHhhhHHhhhc-----------------------c---HHHHHHHHhhhHHHHHHHHhhhhhhhCCH------H
Confidence 5443 344444544421 1 24455566666554433344555555543 3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhccccc---hhhHHHHHHH-HHHHHHHHHHh
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWGLGIPAF-MMFLSCAMFFL 229 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g---~~~~~~~~~~-~~~~~~~~~~~ 229 (588)
..+.+++..+...|+|-++.|++++.+.+.-| |--.|.+... +.+.+..+++.
T Consensus 385 qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 385 QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34577999999999999999999999987654 4344444333 33334444343
No 176
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.87 E-value=5.3e-07 Score=92.10 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=103.8
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 53 TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 53 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
+++|++..+.+.+.........+..++.|.++|| +||||.-++.+++..++.+.--.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~---------------------- 118 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS---------------------- 118 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc----------------------
Confidence 5799999999999999999999999999999999 69999988887777665543211
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH-HHHHHHHHHHHHHHHHhccccch--
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSDVSW-- 209 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~i~~~~~~~~g~-- 209 (588)
.++..++++|++.|++.....+.--++........ .-+++.++.-++... ..+.+-++++..++-++.++.+.
T Consensus 119 ---~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~-g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~ 194 (354)
T PF05631_consen 119 ---SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKR-GFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP 194 (354)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence 36788999999999999998887777765443221 112222333344333 22333445555666666666554
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 007827 210 AWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ 228 (588)
..+|....+...++.++..
T Consensus 195 vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 195 VAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 7888887776666655444
No 177
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.87 E-value=5.1e-08 Score=104.10 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=104.5
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHH-HHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFS-GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
.+.+.|+.+++|+++.+.+++..... ++..++.+++|+++|| +|||+.+..+.++..+..+........+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~-------- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP-------- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 34455777789999999999886654 4688999999999999 6999988777666555443332211100
Q ss_pred CCCCCCCCCCCchhHHHHHHHH----HHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 124 NQDSGACPGPTPWQLAFLFTGL----GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~----~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+.+.+++.. +..+++.+...+....++.+.++ .+ .++.+....++|..+++.+
T Consensus 301 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 301 ------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----AT------QYALLSALASVGRVYVGPT 358 (402)
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HH------HHHHHHHHHHHHHHHHHHH
Confidence 1223333333 34556666667777777777664 22 2455555667788777778
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|.+.+.+||+..|.+.+++.++++++.+.
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888777776655433
No 178
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.86 E-value=3.1e-08 Score=105.31 Aligned_cols=174 Identities=11% Similarity=-0.056 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHH-HHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
+......++..........+.+.|+++ .|+++++.|++.....+ ...++.+++|++.|| +|+|+.+..+.++..+..
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 333444455555555666777888865 79999999998887764 666778999999999 699999888776553332
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+....... .. . .......+....+.+++.+...+...+...+..++ ++..+..++..
T Consensus 289 ~~~~~~~~-~~----------------~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~g~~~~~~ 345 (390)
T TIGR02718 289 LLWFAQAA-FW----------------L-APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD-----GDQAGTDVTAV 345 (390)
T ss_pred HHHHHHHH-cc----------------c-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----ccchHHHHHHH
Confidence 22221110 00 0 01222334444455566666666666666665532 12234678888
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
+...++|..++|.++|++.+..||+..|.+.+++.+++++
T Consensus 346 ~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 346 QSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 8889999999999999999989999998887765555543
No 179
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.5e-06 Score=92.60 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 007827 66 INIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL 145 (588)
Q Consensus 66 ~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (588)
..+......+.+++.+.+.|+ +|.|+.+.+++..+....+.... .|-+.++.+-
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-------------------------~N~y~~yfss 109 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-------------------------PNSYYLYFSS 109 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-------------------------cchHHHHHHH
Confidence 677778888999999999999 79999999998887765544433 2567789999
Q ss_pred HHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 146 GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 146 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.|+|.+..+.-.-.++++..+ ++.+.+-.++.+...+.+..+|.++..
T Consensus 110 allG~Gaallw~GqG~ylt~~st------~~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 110 ALLGFGAALLWTGQGGYLTSNST------RETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred HHhhhhHHheecccceehhhcCC------hhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 99999999999988888888654 333445677777777777777655543
No 180
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.85 E-value=3.2e-08 Score=106.17 Aligned_cols=161 Identities=12% Similarity=-0.039 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHH-hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHH-HHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTT-IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTL-GFASVASFLG 104 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l-~~~~~~~~i~ 104 (588)
+...+..++....++++..++|.|+++ ..|.+..+++.+.....++..++.+++|+++|| +|||+.. ....++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAAG 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHHH
Confidence 344555566677788889999999976 357888899999999999999999999999999 6977753 3333333333
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
. +..... .+....+.+..+.+++.....+.......|.+| .+.++.++++
T Consensus 324 ~-~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~a~g~ 373 (412)
T TIGR02332 324 W-LLASAT-----------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSIS------LQARAIAIAV 373 (412)
T ss_pred H-HHHHhc-----------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccc------hHHHHHHHHH
Confidence 2 211111 011111222222233332222323333345454 2334677999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHH
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAF 218 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~ 218 (588)
.+...++|++++|.+.+.+.+..| |++.+++.++
T Consensus 374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 999999999999999999988764 9998876655
No 181
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.84 E-value=1.5e-08 Score=106.12 Aligned_cols=160 Identities=15% Similarity=0.079 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH--HHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA--SFL 103 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~--~~i 103 (588)
.+.+.+..++.....+....+++.|+++.+|++..+.+.+.....++..++.+++|+++||..+||+........ ..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 344445555556666677888999999999999999999999999999999999999999832333332221111 111
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+......... .+....++..++.|+......+....+..|.+|+ +.++...+
T Consensus 298 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g 349 (379)
T TIGR00881 298 SLLVYWLNPA----------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPK------KAAGTAAG 349 (379)
T ss_pred HHHHHhcCcc----------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc------chhHHHHH
Confidence 1111111100 2334445555666665555555556777888763 22346788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHH
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGL 213 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~ 213 (588)
+++...++|..++|.+.|++.+.+||++.|
T Consensus 350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 888899999999999999999999998764
No 182
>PRK09848 glucuronide transporter; Provisional
Probab=98.84 E-value=1.5e-08 Score=109.97 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.....+..++....++......+.|+++.+|.++...++......++..++.++.++++|| +|+|+++.++.++..++.
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence 3444445555556666666667778888889877766665555567778899999999999 699999999988887777
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCC-CCccchhhhhhH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNW 184 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 184 (588)
+.+.+... .+.+.+++..++.++|.+...+...++.+|..+.++. ..+|..+..++.
T Consensus 309 ~~~~~~~~----------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~ 366 (448)
T PRK09848 309 LLFFWVSV----------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL 366 (448)
T ss_pred HHHHHcCc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence 66654321 2455566777888999999999999999988764321 122334677888
Q ss_pred HHHHHHHHHHHHHHHHHHhccccch
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+.....+|..+++.+.+.+.+..||
T Consensus 367 ~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 367 FSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8889999999999998877655544
No 183
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.82 E-value=4.5e-08 Score=102.00 Aligned_cols=153 Identities=13% Similarity=0.039 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHHhhhhh-hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTS-SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
.+......+.....++... .+.|.|.++.+|.+..+.+.+.....++..++.++.|+++|| +|||+.+..+.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 3444444455555555555 677888877799999999999999999999999999999999 69999888776666655
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
........ .+.+.+++..++.|++.+...+...+++.|.+|+ +.++...+.
T Consensus 291 ~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~ 341 (365)
T TIGR00900 291 ILVVGLTP-----------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA------ELLGRVFGA 341 (365)
T ss_pred HHHHHhhc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence 55544431 1256677888899999999988888999998863 334577899
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS 208 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g 208 (588)
++...++|..++|.++|++.+.+|
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
No 184
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.81 E-value=6.1e-08 Score=100.26 Aligned_cols=172 Identities=14% Similarity=0.116 Sum_probs=131.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
.+.+-.+..++.+=+...+......|-..++|++..+...+....++...+++++.|+|.|| +|.|+++..++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHH
Confidence 44433344444444455667778889989999999999999999999999999999999999 79999999998887765
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
.+...+.. ....+++.-.+.|+..|+.++..=++.+++.|++++.+ .|+.
T Consensus 332 ~~~~~~~~------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~------fFgl 381 (438)
T COG2270 332 ALYLIFLE------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGR------FFGL 381 (438)
T ss_pred HHHHHHcc------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccc------eeeh
Confidence 55444431 22345566678899999999999999999999755444 4999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHH
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 227 (588)
|......++.+||.+.+.+.+..| -|..+....++.+++++++
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 999999999999999998876554 5666555555555555443
No 185
>PRK10054 putative transporter; Provisional
Probab=98.79 E-value=7.8e-08 Score=102.53 Aligned_cols=173 Identities=8% Similarity=0.011 Sum_probs=118.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHH--hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTT--IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
..+......++..+.+.....+.+.|+.. +.+.+....+.+.....+.....+++.|++.|| +++|+.+..+.++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHH
Confidence 33333444444444444444556666543 456667777888888877777888899999999 699999988887777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.....+.. .+.+.+.+...+.++|.+...|...+++.+..|++.. +..+
T Consensus 286 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~------~~~~ 336 (395)
T PRK10054 286 IGLVGFIFSG-----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMK------ASYF 336 (395)
T ss_pred HHHHHHHHcc-----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccc------eehH
Confidence 7766555431 2345566778888999888888778888887764221 2345
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+... ...+|..+||.++|++.++.|....|++.+....++.++..
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 5433 56689999999999999999988888776555444444333
No 186
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.78 E-value=1.2e-07 Score=102.09 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=129.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
|....+....++..+++.......+.|.+..+|.+ ...+.+..+..++..++.++.++++|| +|+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence 44455566667777777777777888888888877 566777888899999999999999999 7999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCC-CCccchhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFF 182 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 182 (588)
+.++..+... .+.+.+++..++.|++.+...+...++++|..+.++. ..++.-+..+
T Consensus 303 ~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~ 360 (428)
T PF13347_consen 303 GFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF 360 (428)
T ss_pred HHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence 8888777631 3677888999999999999999999999999975432 2334456788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccch
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+.+.....+|..+++.+.+.+.+..|+
T Consensus 361 s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 361 SVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 888999999999999998877655444
No 187
>PRK10133 L-fucose transporter; Provisional
Probab=98.78 E-value=1.1e-07 Score=102.95 Aligned_cols=160 Identities=16% Similarity=0.060 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHH-HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYL-TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
+..++.....++...+.+.|+ ++.+|+|+.+++.....+.++..++.+++|++.|| +||||++..+.++.+++.++..
T Consensus 265 l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~ 343 (438)
T PRK10133 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISA 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555666788885 56789999999999999999999999999999999 6999998888777665554443
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
+.. +. ..+....+.|++.+..+|+..+...+.++++. . .+.++.. ..
T Consensus 344 ~~~------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~---~----~as~l~~-~~ 390 (438)
T PRK10133 344 FAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT---K----YGSSFIV-MT 390 (438)
T ss_pred HcC------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh---c----cchhHHh-HH
Confidence 321 11 12455677899999999999999999876421 1 1122222 23
Q ss_pred HHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSC 224 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~ 224 (588)
.+|+.++|.+.|.+.+..| -+..|++..+..+..+
T Consensus 391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4677888899999988887 7888877665444333
No 188
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.78 E-value=1e-07 Score=104.70 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
++...++.++....+...+|.+.++.+|.++...|++.+.+.+|..++.++.+++.+| +++++.+..+.++++++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHH
Confidence 3333444445445566778999999999999999999999999999999999999999 699999888888887777777
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
+++ .+.+..++..++.|++.....+...+.+....|+ ..++..++++...
T Consensus 302 al~------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~------~~~GRv~si~~~~ 351 (524)
T PF05977_consen 302 ALS------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPD------WVRGRVFSIYQMV 351 (524)
T ss_pred hcc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHhHHHHHHHHH
Confidence 665 3566777788888988888877777877777753 3344668999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
...+..+|..+.|.+.+.+|.+..+.+.++..+++.++..
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877766555555443
No 189
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.76 E-value=2.8e-07 Score=100.62 Aligned_cols=161 Identities=11% Similarity=-0.033 Sum_probs=107.9
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN 124 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (588)
.+.|.+ .++.|++....++......+...++.+++|+++|| +|||+.++.+.++.+++.+++......+
T Consensus 292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~--------- 360 (479)
T PRK10077 292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ--------- 360 (479)
T ss_pred HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC---------
Confidence 344544 35789988888887778888889999999999999 6999999999988888877665432100
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhccc-ccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH--
Q 007827 125 QDSGACPGPTPWQLAFLFTGLGLMVIGAGG-IRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV-- 201 (588)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~-- 201 (588)
........+.++.+++.+. ..|...++++|.+|+ +.++.+.++.+...++|..+++.+.+
T Consensus 361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 361 -----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh------hHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0111223334444444433 346678889999863 22346677777777888887765554
Q ss_pred ----HhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 202 ----YVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 202 ----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
++.+..+|++.|++.++..+++.++.++..|+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence 34456788888888776666665554444443
No 190
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.76 E-value=2.9e-07 Score=96.99 Aligned_cols=158 Identities=12% Similarity=0.104 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
.+...+....++....+.|.|+++++|.++.+.+.+.....++..++.+++|+++|| +|||+.+..+.++..++..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 212 ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556667778889888999999999999999999999999999999999 6999998888777776665555
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.....+ ......++....+.|++.+...+.......|.+|+ + ++...+.++...
T Consensus 291 ~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~---~g~~~~~~~~~~ 344 (385)
T TIGR00710 291 ITAILG-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH----V---AGTASALFGTLR 344 (385)
T ss_pred HHHHhc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc----c---chHHHHHHHHHH
Confidence 432100 01234455566778888888888887877776642 1 234566655555
Q ss_pred HH-HHHHHHHHHHHhccccchhhHHHH
Q 007827 190 TF-AMMISLTVIVYVQSDVSWAWGLGI 215 (588)
Q Consensus 190 ~~-g~~i~~~i~~~~~~~~g~~~~~~~ 215 (588)
.. |+..++. .+.+.+..+|...+..
T Consensus 345 ~~~g~i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 345 LVLGAIVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHH-HHhccccChHHHHHHH
Confidence 44 4544544 4455444445444433
No 191
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.76 E-value=3.4e-07 Score=97.61 Aligned_cols=156 Identities=10% Similarity=-0.027 Sum_probs=109.0
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
++.....++...+.++++.+++|++..+.+.+.....++..++.++.|++.|| .+| +.++.+.++..+..+++....
T Consensus 226 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~~~~~~~~~l~~~~- 302 (394)
T PRK10213 226 FMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPLVLAVSALVLTLWG- 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHHHHHHHHHHHHHHh-
Confidence 34444445555666444456789999999999999999999999999999999 454 444444444333323332221
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.+.+.+.+..++.|++.+...+...+++.+..|+ .. +...+.+....++|.
T Consensus 303 ----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~lg~ 353 (394)
T PRK10213 303 ----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD---QA----EKAGSIQVAVIQLAN 353 (394)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc---cH----HHHHHHHHHHHHHHH
Confidence 2345666778888999998888888788877652 11 123455566778999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMF 221 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~ 221 (588)
.+|+.++|++.+..|++..+...++..+
T Consensus 354 ~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 354 TCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 9999999999999999888887665443
No 192
>TIGR00895 2A0115 benzoate transport.
Probab=98.76 E-value=6.1e-08 Score=102.29 Aligned_cols=143 Identities=13% Similarity=-0.012 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
+....++....++....++| ++.+++|.+..+.+.+.....++..++.++.|+++|| +|||+.+.... +..+...++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~ 331 (398)
T TIGR00895 255 LWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLL-LGAVFAVLV 331 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHH-HHHHHHHHH
Confidence 33444455566666777777 6667899999999999999999999999999999999 69985544333 333322222
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.... .+....++..++.|++.+...+...+++.|.+|+ +.++..+++.+..
T Consensus 332 ~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~ 382 (398)
T TIGR00895 332 GSTL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT------AIRATGVGWAIGI 382 (398)
T ss_pred HHHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH------HHHHHHHHHHHHH
Confidence 2211 2344566777888999998889899999998863 2335678888889
Q ss_pred HHHHHHHHHHHHHHh
Q 007827 189 FTFAMMISLTVIVYV 203 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~ 203 (588)
..+|..++|.++|++
T Consensus 383 ~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 383 GRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhHHhc
Confidence 999999999998875
No 193
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.76 E-value=5.7e-08 Score=106.10 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.....+..++..+.+++...++|.|+++.+|.++.+++++.....++..++.+++|++.|| +|||+.+..+.++.+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHH
Confidence 3444555566667777888899999999999999999999999999999999999999999 699999988888777776
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.++..... + ..+.+.++...++.|++.+...++......+.+|+ +.++.+.+.+
T Consensus 336 ~~~~~~~~-~-------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~------~~~g~~~~~~ 389 (485)
T TIGR00711 336 YWRAFTFT-P-------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP------HKIARGSSLS 389 (485)
T ss_pred HHHhccCC-C-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHhHHHHHH
Confidence 66553211 0 02344556667888999888776666666666652 2335678888
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 007827 186 YFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~ 206 (588)
+...++|+.+|+.+.+.+.++
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998877654
No 194
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.75 E-value=8.9e-08 Score=105.28 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 007827 28 FVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLV 107 (588)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~ 107 (588)
...+..++....+++...++|.|+++.+|.|+.++|.......++..++.++.|++.|| +|||+.+..+.++.+++..+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~ 341 (495)
T PRK14995 263 SGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYG 341 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHH
Confidence 33445555566677777889999999999999999999999999999999999999999 69999988888877777665
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH
Q 007827 108 LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF 187 (588)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (588)
+..... ..+.+..+...++.|+|.|...+.......+..|++ + ++.+.+.++.
T Consensus 342 l~~~~~---------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~----~--~g~~~~~~~~ 394 (495)
T PRK14995 342 LAMTDF---------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE----K--AAAAGAIETM 394 (495)
T ss_pred HHHhcC---------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH----h--cchHHHHHHH
Confidence 544311 012344566778889999988887777777766532 1 2345778888
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 007827 188 TFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~ 205 (588)
..++|..+|+.+.+.+.+
T Consensus 395 ~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 395 AYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999887654
No 195
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.74 E-value=1.5e-07 Score=103.62 Aligned_cols=165 Identities=16% Similarity=0.087 Sum_probs=101.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhH------------HHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATT------------LINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
++..+.+|++..++|.+++ +.|++..+++. ...+..++..++.+++++++|| +|||++++++.++.
T Consensus 298 ~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~ 375 (502)
T TIGR00887 298 FLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFIL 375 (502)
T ss_pred HHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHH
Confidence 3445677888888888885 67887654322 1233344556688899999999 69999998887776
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
+++..+..+..... +.+ ..+....+...+...+..+....+.+|.+|+ +.|+.+
T Consensus 376 ~~~~~~l~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~------~~R~~~ 429 (502)
T TIGR00887 376 TVLFFVLGFAYNHL-------------------STH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPT------RYRSTA 429 (502)
T ss_pred HHHHHHHHHHHHhc-------------------chh-HHHHHHHHHHHHHhcCCCchhhhhhhccCch------hHHHHH
Confidence 66655544431100 001 1111111111222223345566777999974 333467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccc----------cchhhHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSD----------VSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~----------~g~~~~~~~~~~~~~~~~~~ 226 (588)
.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 8888889999999999999988763 34455666665555554443
No 196
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.72 E-value=2.1e-07 Score=112.75 Aligned_cols=161 Identities=14% Similarity=0.054 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCch-hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI-TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
+..++..++.....+....+++.|+++.+|++.. +.+++.+...++..++.+++|+++|| +++++.+.++.++.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~ 313 (1146)
T PRK08633 235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSL 313 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHH
Confidence 3333344444455556677889999999999999 99999999999999999999999999 699998888887777766
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+++.+. .+.+.++++.++.|++.+...+...+++.+..|++ .+++++++.
T Consensus 314 ~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~ 363 (1146)
T PRK08633 314 FLLPTA------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK------ELGKVLAAN 363 (1146)
T ss_pred HHHHHh------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc------chhhhhHHH
Confidence 665544 24556677788889999988888888888887632 234567888
Q ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAF 218 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~-~~g~~~~~~~~~~ 218 (588)
+...++|.++++.+++.+.. .+++...|++.+.
T Consensus 364 ~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 364 NFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888888777766543 2345555554433
No 197
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.67 E-value=5.1e-07 Score=95.90 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=58.5
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
....+.+.|+++++|++..+.+.+.....++..++.++.|++.|| +|||+.+.++.++..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888899999999999999999999999999999999 699999998888877777666654
No 198
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.64 E-value=4.4e-07 Score=109.94 Aligned_cols=181 Identities=14% Similarity=0.001 Sum_probs=123.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.++...+..++.++.++.+..++|.|+++.+|.+..+.+++.+.+.++..++.+++|+++|+ .++++.+..+.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence 344455555556666667777899999999999999999999999999999999999999998 5777766666555554
Q ss_pred HHHHHHHhhcc--c-cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 104 GMLVLSLTAAI--S-KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 104 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
+.+.+.+.... . ..+...+ .++ ....+.+.++++.++.|++.+...++..+++.+..|++.. +.
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~------G~ 370 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSI----LVF---LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHR------AR 370 (1140)
T ss_pred HHHHHHhcccccccccccccch----hhh---hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccc------ee
Confidence 44433331000 0 0000000 000 0002345667788888999999998899999998875332 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc-ccchhhHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAF 218 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~-~~g~~~~~~~~~~ 218 (588)
.++..+...++|..+++++++.+.. ..++...+.+.++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 5787888889999999999888863 4566666555443
No 199
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.63 E-value=1.2e-06 Score=93.25 Aligned_cols=157 Identities=13% Similarity=-0.009 Sum_probs=111.3
Q ss_pred HHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 007827 37 KLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 116 (588)
Q Consensus 37 ~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 116 (588)
+.........++.|+++.+|.++.+.|.+.....++..+++++.+++.|| .++|+.+..+.+. .+........
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~----- 290 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ----- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH-----
Confidence 34444555667788888999999999999999999999999999999999 6999887776433 3322222222
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 117 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
.+++...+..++.|++.+...++..+.+.+..| + +..++...+..+...++|..++
T Consensus 291 -------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~---~--~~~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 291 -------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGH---V--LVGAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred -------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc---c--cccchhHHHHHhHHHHHHHHHH
Confidence 234555667778899988888878887766432 1 1223567888888999999999
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 197 LTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 197 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
..+.+.+ ...|-+..+.+.....++...
T Consensus 347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 347 LGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 9988865 456766666665444444333
No 200
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.62 E-value=9.3e-07 Score=89.76 Aligned_cols=168 Identities=16% Similarity=0.078 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.|.+.+..-...+.+|.+..++|.++. +.|+|+.++|++.+...+.....++..-.+++|.-.+|+..+....++.+|.
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 355555666778899999999999986 6899999999999999999999999999999975567777777777788888
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+.+.+.+. +...+. .+++|+|.|...|....++.+-.++.+ + -++..+.-
T Consensus 289 ~G~~~~P~-----------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgma 338 (395)
T COG2807 289 VGLLLAPG-----------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGMA 338 (395)
T ss_pred HHHHHhhh-----------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHHh
Confidence 77776532 222232 588999999999999999998765422 1 12344444
Q ss_pred HHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~ 224 (588)
+.++.+=+.+||.+.|++-+.. +|+..........++..
T Consensus 339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~ 378 (395)
T COG2807 339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML 378 (395)
T ss_pred hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence 5555555666999999988765 58877665544443333
No 201
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.60 E-value=6.1e-07 Score=95.82 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=103.0
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
...++|.|+++..+ ++.+.+++.....++...+..+.+++.||+++.++.+..+.++..++.+++...
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 34567888876555 778888887777766665555556666553566777777777777666555544
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
.+.+.+++...+.+++.+...|...+++.+..|++ .+++.++.+....++|..+||.++|+
T Consensus 295 -------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 295 -------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADAR------ARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc------cchhhhhHHHHHHHHHHHhcccchHH
Confidence 23445556667788888888888888888888642 22355788888999999999999999
Q ss_pred hcccc---c-hhhHHHHHHHHHHHHHH
Q 007827 203 VQSDV---S-WAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 203 ~~~~~---g-~~~~~~~~~~~~~~~~~ 225 (588)
+.+.. + ....+++..++.++.++
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 98763 2 24444444444444433
No 202
>PRK11043 putative transporter; Provisional
Probab=98.59 E-value=1.6e-06 Score=92.36 Aligned_cols=148 Identities=10% Similarity=-0.056 Sum_probs=100.8
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007827 36 EKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAIS 115 (588)
Q Consensus 36 ~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 115 (588)
....++.+..++|.|++ ++|++..+.++......++..++..+.+++.|| +|+|+.+....+...++.+.+.+....+
T Consensus 215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (401)
T PRK11043 215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLS 292 (401)
T ss_pred HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556667787775 589999999988888888889999999999999 6999987666555554443332221100
Q ss_pred cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHH
Q 007827 116 KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI 195 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 195 (588)
..+...+++...+.+++.+...+...+...+..|+ .++...++++.....++.+
T Consensus 293 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 293 -------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFL 346 (401)
T ss_pred -------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHH
Confidence 02334455566777888888888777776666542 1235677777777778888
Q ss_pred HHHHHHHhccccchhh
Q 007827 196 SLTVIVYVQSDVSWAW 211 (588)
Q Consensus 196 ~~~i~~~~~~~~g~~~ 211 (588)
++.+.+.+.+......
T Consensus 347 ~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 347 ASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHccCCChhHH
Confidence 8888888776443433
No 203
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.58 E-value=1.4e-06 Score=77.11 Aligned_cols=132 Identities=20% Similarity=0.320 Sum_probs=93.6
Q ss_pred hHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHH
Q 007827 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL 459 (588)
Q Consensus 380 ~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (588)
.++.++..++..++ .||.+|| +.+..+..+..++.+..... .+.+
T Consensus 8 ~~~~~~~~~~~g~~----~d~~g~~-------~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 52 (141)
T TIGR00880 8 ALGQLIYSPLSGLL----TDRFGRK-------PVLLVGLFIFVLSTAMFALS------------------------SNIT 52 (141)
T ss_pred hhHHHHHHhhHHHH----Hhhcchh-------HHHHHHHHHHHHHHHHHHHh------------------------ccHH
Confidence 34444555554443 7776665 45555666665665554432 2445
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchh
Q 007827 460 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539 (588)
Q Consensus 460 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 539 (588)
......++.+++.....+....++.|.+|++.|++..++.++...++..+++.+.+.+.+.. +.
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~ 116 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GW 116 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------ch
Confidence 56667788888888888889999999999999999999999999999999999999886432 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 007827 540 DYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 540 ~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
.+.|++.+.+.++..+..+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 117 RAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Confidence 46777777777766666555543
No 204
>PRK09669 putative symporter YagG; Provisional
Probab=98.57 E-value=4.4e-07 Score=98.31 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=92.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHH
Q 007827 60 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 139 (588)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (588)
...+.+.....+...++.++.++++|| +|||+.+..+.++.+++.....+... .+.+
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 320 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIPP----------------------SNVW 320 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhCc----------------------chHH
Confidence 334455556667778889999999999 69999998887665544333333211 3455
Q ss_pred HHHHHHHHHHhhcccccccchhhccccCCCCCC-CCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccch
Q 007827 140 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 140 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
.+++..++.|++.+...+...++++|..+.++. ..++.-+..++.+.++..+|..+|+.+++.+.+..|+
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 667777889999999999999999998864322 2233345677888889999999999999988776665
No 205
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.56 E-value=2.6e-07 Score=100.96 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=113.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
|....++...++.+...+....+.+.|.+...+ +....+.+.....+...++.++.++++|| +|||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 444444455555566655555555545443444 45556666777778888999999999999 7999999888877666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFF 182 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (588)
+.+...+....+ +.+.+.+++.-++.+++.+...+...++++|..+.++ +..+|.-+..+
T Consensus 309 ~~~~~~~~~~~~-------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~ 369 (473)
T PRK10429 309 SCGVLLLMGLAA-------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY 369 (473)
T ss_pred HHHHHHHHhccC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence 555443321000 1345556667778889999888888999999876431 23334446678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccch
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+...+...+|..+++.+.|++.+..|+
T Consensus 370 s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 370 SVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888889999999999999988765554
No 206
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.55 E-value=3.5e-07 Score=100.03 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch--hHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY--KTLGFASVASFLG 104 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr--~~l~~~~~~~~i~ 104 (588)
+.+.....+..++++....+++.|.+ ..|.+..++..+.++..+...++.+++|+++|+ ...+ ....++.+...+.
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHH
Confidence 34445556667777777788888876 899999999999999999999999999999999 4733 3344444444444
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
...+.+. +++..++..-.+.|++.|.+.......+.|....++ .+.++++
T Consensus 379 ~~~~p~~------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl 428 (509)
T KOG2504|consen 379 RLFLPFA------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGL 428 (509)
T ss_pred HHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHH
Confidence 4444444 456778888888999999998887788889886533 3456999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhcc
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
...+..++..+||.+.+++.+..| |...|+..++..+++..+.++.+
T Consensus 429 ~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 429 LLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999988877 99999998888877776655544
No 207
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.53 E-value=2.7e-06 Score=89.81 Aligned_cols=166 Identities=13% Similarity=-0.036 Sum_probs=104.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch---hHHHH-HHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY---KTLGF-ASV 99 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr---~~l~~-~~~ 99 (588)
+..+.+....++....+|++..++|.|+++ .|++.. .+.......+...++ .++++|| +.|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~-~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDR-VARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHH-hhhhhhHHHHHHHHHH
Confidence 445666667788888889999999999964 678764 555555554544444 5788888 4554 33222 232
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+.++........ .+....++...+.+++.....+...++.+|.+|++. ++
T Consensus 266 ~~a~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rg 315 (368)
T TIGR00903 266 LIAAFFLALAFE------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HG 315 (368)
T ss_pred HHHHHHHHHHHc------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cC
Confidence 233222222222 112233445555667677777777888999997522 24
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++.++.+...++|+..+|.+.+.+.. |.+..|.+.++..+++.+..
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 56888889999999999998887663 66666666665555554443
No 208
>TIGR00898 2A0119 cation transport protein.
Probab=98.50 E-value=7.3e-07 Score=98.12 Aligned_cols=132 Identities=13% Similarity=-0.004 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 007827 67 NIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLG 146 (588)
Q Consensus 67 ~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (588)
....+...++.+++++++|| +|||+.+.++.++.+++.+++.+... ......++..+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~ 418 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAV 418 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHH
Confidence 34456677888999999999 69999999888887777666555421 11233344445
Q ss_pred HHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 147 LMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 147 l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
+.+++.+...+....+.+|.+|+ +.++.+.++.+....+|++++|.+.+ +. ..++..++.+.++..+++.++
T Consensus 419 ~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 419 LGKFGITSAFQMVYLYTAELYPT------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHHhcccccH------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence 55566666667788889999974 22345688888889999999999988 33 345666776666655555444
Q ss_pred HHh
Q 007827 227 FFL 229 (588)
Q Consensus 227 ~~~ 229 (588)
..+
T Consensus 491 ~~~ 493 (505)
T TIGR00898 491 TLF 493 (505)
T ss_pred HHc
Confidence 433
No 209
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.49 E-value=5.5e-06 Score=80.35 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=88.9
Q ss_pred HHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC
Q 007827 49 VYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSG 128 (588)
Q Consensus 49 ~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (588)
.|+.+.+|+...+.|.+.........+...+.|.|+|| .|||+. ++.+++...++.++..-
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKra----cvtycitYiLsCiTKhS-------------- 121 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRA----CVTYCITYILSCITKHS-------------- 121 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccc----eeeehHHHHHHHHhhcC--------------
Confidence 45567889999999877766666667778888999999 799996 45566666677766431
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh-HHHHHHHHHHHHHHHHHHHhcccc
Q 007827 129 ACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN-WYYFTFTFAMMISLTVIVYVQSDV 207 (588)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~i~~~i~~~~~~~~ 207 (588)
.++-.++++|.+-|+.........-++...--.+++.=+.+.+..-++ ....++.+-++++.+.+-++.+++
T Consensus 122 -------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~ 194 (454)
T KOG4332|consen 122 -------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF 194 (454)
T ss_pred -------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 345678999999999988777666554432111111111111111111 111223333444555555566554
Q ss_pred --chhhHHHHHHHHHHHHHH
Q 007827 208 --SWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 208 --g~~~~~~~~~~~~~~~~~ 225 (588)
|--.+|-..+....++..
T Consensus 195 slGPVAPFdAAacfLaigmA 214 (454)
T KOG4332|consen 195 SLGPVAPFDAAACFLAIGMA 214 (454)
T ss_pred ccCCCCchHHHHHHHHHHHH
Confidence 445666655544444433
No 210
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.48 E-value=5.2e-06 Score=87.46 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..++...+.+....+.|.++.+.+|+++.+.+.+.....++..++.+++|+++|| +|||+.+..+.++..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 202 ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHH
Confidence 3344444455555666778888899999999999999999999999999999999 79999988887665443
No 211
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.47 E-value=5.4e-06 Score=88.03 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCc
Q 007827 410 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 489 (588)
Q Consensus 410 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~ 489 (588)
+...+..|+..-.+=++.+..+ .++|..++.=++.++..+..+.+.-+|+...+|+
T Consensus 435 Hv~v~~lgLa~~~~Rf~~~S~L------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp 490 (618)
T KOG3762|consen 435 HVNVMYLGLACNVGRFLYYSYL------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPP 490 (618)
T ss_pred ccceeeehhhHHHHHHHHHHHh------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3356777777777777777765 4667777778999999999999999999999999
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 490 NMRSIGGSLAFVG-FAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 490 ~~rg~~~~~~~~~-~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
++|.+++++.... ..+|-.+|.+++|.+.... +....|..+++.+++..+.+..+-+..+++
T Consensus 491 ~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------------g~~ttf~~~giAcl~~l~~~~~iq~~l~~~ 553 (618)
T KOG3762|consen 491 GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------------GARTTFRIFGIACLVTLALFISIQLLLKRR 553 (618)
T ss_pred cchHHHHHHHHHHhcccCcchhhhhhhhhheee----------------hhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 9999999998554 6788888888888776543 344677888888887777766665544443
No 212
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.47 E-value=8.4e-07 Score=92.86 Aligned_cols=143 Identities=14% Similarity=0.067 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHH-HHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFS-GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
.+.+.+..++..+.++....+++.|+++ +|+++.+.+.+..+.. ++..++.+++|+++|| +||||.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence 4444455556677778888899999986 9999999998887665 5778999999999999 69999988888777766
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
..+..+..+... ++ + ....+.+.++.+.++.+++.+...+...+++.+.+|++. +++.+++
T Consensus 289 ~~~~~~~~~~~~---------~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 349 (356)
T TIGR00901 289 NAGFVWLASNGH---------HD--G--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMAL 349 (356)
T ss_pred HHHHHHHHhcCc---------cc--c--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence 554443211000 00 0 001134566777888899999999999999999997532 2345776
Q ss_pred HHHHH
Q 007827 185 YYFTF 189 (588)
Q Consensus 185 ~~~~~ 189 (588)
++...
T Consensus 350 ~~~~~ 354 (356)
T TIGR00901 350 LSSLS 354 (356)
T ss_pred HHHHH
Confidence 55544
No 213
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.46 E-value=3.1e-06 Score=87.70 Aligned_cols=137 Identities=18% Similarity=0.264 Sum_probs=100.9
Q ss_pred hhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 007827 375 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 375 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
......++..+..++.++ +.||+++| +.+.++.++.+++..+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~g~----l~dr~g~r-------~~l~~~~~~~~~~~~~~~~~----------------------- 82 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGY----LSDRFGRR-------RVLIIGLLLFALGSLLLAFA----------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHS-HH-------HHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCe-------eeEeehhhhhhhHHHHhhhh-----------------------
Confidence 344445555556665444 48887765 67777777777774444431
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 534 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 534 (588)
.+.+.++...++.|++.+...+....++.|.+|++.|++++++......+|..+++.+.+.+.+..
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------------- 148 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------------- 148 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-------------
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-------------
Confidence 234477888899999999999999999999999999999999999999999999999999886432
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 535 NKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 535 ~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
+.++.|++.+++.++..++...+.+
T Consensus 149 ---~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 149 ---GWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp ---HHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred ---ccccccccccchhhhhhhhHhhhhh
Confidence 3445788888888877665444443
No 214
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.45 E-value=4.5e-06 Score=89.77 Aligned_cols=189 Identities=12% Similarity=0.026 Sum_probs=120.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.+...+.+.++..+.--.........+-++-|++..++.++.....+...+..+++.++.|| +|||+.++.+..++.+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHH
Confidence 334444445555544433333333334445779999999999999999999999999999999 6999999999999888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhccc-ccccchhhccccCCCCCCCCccchhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGG-IRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
..+++.....+..... ++-.+..+++.++..+..+. ..|...-+.+|++|++ .|..+.
T Consensus 348 ~~~~~~~~~~l~~~~~---------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~------~R~aa~ 406 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFG---------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS------ARSAAQ 406 (485)
T ss_pred HHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc------chHHHH
Confidence 8777665532211000 01112233444444433332 2567788889999842 223567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceee
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA 235 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
++-..+..+..++-......+.+..|- +.|.+..+...+..+..+...|+++
T Consensus 407 s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 407 SVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 777777777777777777777776665 4555555555555555555556543
No 215
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.44 E-value=6.9e-08 Score=100.67 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=119.9
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 453 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (588)
.++....+..+++.|+++++ .||..|| ..+++|..+..++.+..+..
T Consensus 72 ll~~vf~v~~~i~sPl~gyL----adryNR~-------~v~~vG~~iW~~Av~~~~fs---------------------- 118 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYL----ADRYNRK-------RVIAVGIFIWTLAVFASGFS---------------------- 118 (493)
T ss_pred chhHHHHHHHHHHHHHHHHH----HhhcCcc-------eEEeeHHHHHHHHHHHHHHH----------------------
Confidence 34444556666777886665 7876666 67888988888888877764
Q ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 007827 454 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 533 (588)
Q Consensus 454 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~ 533 (588)
..+|.+.+.-.+.|+||..+.|...+++++.+|+..|++..++++++..+|..+|...+..+...+. .|
T Consensus 119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W---- 187 (493)
T KOG1330|consen 119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW---- 187 (493)
T ss_pred --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce----
Confidence 4677888888999999999999999999999999999999999999999999999988888765542 13
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007827 534 LNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 572 (588)
Q Consensus 534 ~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
+|.|.+.+++.++.+++..++.+|..++..++.
T Consensus 188 ------r~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 188 ------RWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred ------EEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 568889999999999988888888776544433
No 216
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.40 E-value=1.6e-06 Score=90.72 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+.+.+..++.....+.+..+++.|+++.+|+++.+++.+.....+...++.+++|+++|| +|||+.+..+.++.+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~ 306 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAF 306 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHH
Confidence 333444444455566777889999999999999999999999999999999999999999 6999888777766666555
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++.+... ++.+....+....+.+++.|...+...+++++.++ +.++...++.+
T Consensus 307 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~g~~~g~~~ 359 (366)
T TIGR00886 307 LVVLGLV--------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-------RATGAVSGLVG 359 (366)
T ss_pred HHHhcCC--------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-------hhcccHHHHHH
Confidence 5544311 00033444444555555666666666777777764 12234566655
Q ss_pred HHHHHH
Q 007827 187 FTFTFA 192 (588)
Q Consensus 187 ~~~~~g 192 (588)
...++|
T Consensus 360 ~~~~~g 365 (366)
T TIGR00886 360 AIGNLG 365 (366)
T ss_pred HhccCC
Confidence 555443
No 217
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.38 E-value=4.1e-06 Score=84.91 Aligned_cols=170 Identities=9% Similarity=0.004 Sum_probs=106.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHH-----------------hc--CCCchhhhHHHHHHHHHHHHhhhhhhhhh
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTT-----------------IF--NMKSITATTLINIFSGTTNFATLLGAFLS 84 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-----------------~~--g~s~~~~~~~~~~~~~~~~~~~~~~G~ls 84 (588)
|..+.+....|...+.||+.+-.-....+. .. ..+...--.=..+.++..+-|.++.|++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 444556677888888888866433322221 11 11111111123456677889999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhcc
Q 007827 85 DTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 164 (588)
Q Consensus 85 Dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~ 164 (588)
|| +||||++-.+.+++++.++++..... . .....+++.+|++...+. .+++.|..
T Consensus 406 er-lGRKkTMal~l~~f~iflfll~~c~~----------r----------n~~tvllf~arafisg~f----qvaYvYtP 460 (528)
T KOG0253|consen 406 ER-LGRKKTMALSLILFGIFLFLLTTCKT----------R----------NAYTVLLFTARAFISGAF----QVAYVYTP 460 (528)
T ss_pred HH-hcchhHHHHHHHHHHHHHHHHHHhcC----------c----------chhHHHHHHHHHHHhchh----eEEEEecC
Confidence 99 79999999999999888777665421 0 023455677787654444 45788899
Q ss_pred ccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 165 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
|.+|.+.+ +.+.+.......+|+.+.|.++ ...+. +-..+..+.....+++.+.
T Consensus 461 EVyPTavR------atgvGtcSsmaRIggI~~p~iA-~~~e~-s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 461 EVYPTAVR------ATGVGTCSSMARIGGIFSPVIA-MRAEL-STSLPIFVYGALFILAGIA 514 (528)
T ss_pred cccchhhh------hcchhhhhhHHhhhhhhhhHHH-HHhcc-ceeehHHHHHHHHHHHHHH
Confidence 99975322 3457777778899999999998 33332 2333334444444444443
No 218
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.37 E-value=3.7e-06 Score=90.99 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccc--------hhHHHH-
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGR--------YKTLGF- 96 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr--------r~~l~~- 96 (588)
++.+.+..++.+.+++....++|.|+.+.+|++-.+.|+..+...+...+..+++|.++|| +-+ ||.+-.
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHHhH
Confidence 3567788899999999999999999999999999999999999999999999999999999 444 232221
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
+....+++.+.+.+... . . .......+.++..+.|+..+++.-+. . ...++
T Consensus 339 ~~~~~ai~l~~l~~~~~-----------~------~-~~~a~~~l~~~~~~~g~~~~Gf~~~~----~-------~~apq 389 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSD-----------E------H-RLLAVILLTIAIGLSGFNISGFYKNH----Q-------DIAPQ 389 (466)
T ss_pred HHHHHHHHHHeeeecCC-----------C------c-chHHHHHHHHHHHHcccchhhhHhhh----h-------hccch
Confidence 11112222222222210 0 0 00122233333344444444433211 1 11224
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHHHHHhc
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQSD---VSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
..+..+++.+...++++.++|.+.+.+..+ ..|++.|.+.++..+++.+++.+.
T Consensus 390 ~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 390 HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 446778888889999999999999988843 369999999988887777665543
No 219
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.37 E-value=5.1e-06 Score=89.08 Aligned_cols=149 Identities=9% Similarity=-0.078 Sum_probs=103.7
Q ss_pred HHhhhhhhhHHHHHHHh-cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 007827 38 LGTTGTSSNLLVYLTTI-FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 116 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 116 (588)
....+..++++.|+.+. .+.+...++...+.+..+..++.+++|++.|| +++||.+.++.++.++..++.....
T Consensus 246 g~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~---- 320 (410)
T TIGR00885 246 GVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG---- 320 (410)
T ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 33335667888898643 25555556666777778889999999999999 6999998888777776665555531
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 117 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
+. .......+.|++.+.++|+..++..+.++++. +. ..... ....+|+++.
T Consensus 321 --------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~--~~-----~s~~l-~~~~~Gga~~ 371 (410)
T TIGR00885 321 --------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT--KY-----GAAGL-VMAIIGGGIV 371 (410)
T ss_pred --------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hh-----hHHHH-HHHHhccchH
Confidence 11 22455667788888888999999999886321 11 11111 2234899999
Q ss_pred HHHHHHhcccc------chhhHHHHHHHHH
Q 007827 197 LTVIVYVQSDV------SWAWGLGIPAFMM 220 (588)
Q Consensus 197 ~~i~~~~~~~~------g~~~~~~~~~~~~ 220 (588)
|.+.|++.+.. +.+..|+++.+..
T Consensus 372 p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 372 PPLQGFIIDMKEIAAAPAVNTSFILPLLCF 401 (410)
T ss_pred HHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence 99999999853 4778888765543
No 220
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.35 E-value=6.2e-06 Score=87.95 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=119.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
..++...++....+.+..|.+..+|.++............+..++.++...|++| +|+|+++.++.++.+++.+...+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455666677777788888888888888888888889999999999 799999999999999999888887
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhhhHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 190 (588)
.. ++..++++..++.++|.+...+...++++|.....+ ...+|.-+..++.+.++.-
T Consensus 323 ~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K 380 (467)
T COG2211 323 PA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRK 380 (467)
T ss_pred cC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHH
Confidence 42 567888888999999999999999999999875432 2333444567788888888
Q ss_pred HHHHHHHHHHHHhccccc
Q 007827 191 FAMMISLTVIVYVQSDVS 208 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g 208 (588)
+|.+++..+.+++....|
T Consensus 381 ~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 381 LGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 888888888777655544
No 221
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.34 E-value=1.4e-05 Score=85.81 Aligned_cols=135 Identities=12% Similarity=0.090 Sum_probs=98.3
Q ss_pred hHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHH
Q 007827 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL 459 (588)
Q Consensus 380 ~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (588)
.++..++.++ ..++.||+||| +.+..+.++..++.+..... .+.+
T Consensus 61 ~~~~~~~~~~----~G~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~a------------------------~~~~ 105 (413)
T PRK15403 61 LAGGMALQWL----LGPLSDRIGRR-------PVLITGALIFTLACAATLFT------------------------TSMT 105 (413)
T ss_pred HHHHHHHHHh----hhHHHHHcCch-------HHHHHHHHHHHHHHHHHHHc------------------------CCHH
Confidence 3344444444 44569998887 56667777776666655542 3566
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchh
Q 007827 460 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539 (588)
Q Consensus 460 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 539 (588)
.++..-++.|++++...+..+.++.|.+|++.|++.+++......++..+++.+.+.+.+.. +.
T Consensus 106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----------------gw 169 (413)
T PRK15403 106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----------------HW 169 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CH
Confidence 67777888888887766677788889999999999999999999999999999888776532 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 540 DYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 540 ~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
++.|++.+++.++..+..++..+|.+
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 67888888877777665555556553
No 222
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.33 E-value=9.1e-06 Score=86.57 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=120.4
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
+..+...........+...|+++.-|.+....+.+.+...++-.+.-.+.+++-.| +|-|+++.++++..++=..+.+.
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555567788899875544788888888888888888888999999999 69999999999888776666665
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH-H
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT-F 189 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (588)
... | .+......+++..+.|+..+.+..+...++.+..|++.+ +++.+++... .
T Consensus 293 ~~~-~------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~------at~Q~l~~~~~~ 347 (400)
T PF03825_consen 293 FSD-P------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELR------ATAQGLYSALSF 347 (400)
T ss_pred hcC-C------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccch------HHHHHHHHHHHh
Confidence 421 0 001122334445678999999999999999999875322 3445655543 4
Q ss_pred HHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHHHHHhc
Q 007827 190 TFAMMISLTVIVYVQSDVSWA------WGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+|..+|..++|++.+.+|-+ ..+.+.+++.++..+++++.
T Consensus 348 Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 348 GLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999887644 34444444444444444443
No 223
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=3e-06 Score=86.95 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=115.0
Q ss_pred hhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 007827 373 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 452 (588)
Q Consensus 373 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (588)
+.+.+.-++..++..|+++. +.+|.|+| ..+.+|++++..+.+++++.
T Consensus 109 G~LFaskA~~qllvnp~~G~----l~~~iGy~-------ipm~~Gl~vmf~sTilFafg--------------------- 156 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGN----LIDRIGYK-------IPMVAGLFVMFLSTILFAFG--------------------- 156 (464)
T ss_pred hHHHHHHHHHHHHhcccchh----hHHHhccc-------cHHHHHHHHHHHHHHHHHHc---------------------
Confidence 34445556666666676544 48888877 57889999999999998875
Q ss_pred cccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC
Q 007827 453 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM-RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 531 (588)
Q Consensus 453 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~-rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~ 531 (588)
.+.+.++.+=.+.|+|..+.++...+++++.+|++. |++++|+.....++|..++|.++|.+++..
T Consensus 157 ---~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---------- 223 (464)
T KOG3764|consen 157 ---NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---------- 223 (464)
T ss_pred ---chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc----------
Confidence 456688889999999999999999999999999755 799999999999999999999999999876
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 532 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 532 ~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
+....|.+.+.++++-..+-++....+
T Consensus 224 ------Gk~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 224 ------GKSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred ------CCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 344678999999988877766665443
No 224
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.27 E-value=1.3e-05 Score=84.60 Aligned_cols=176 Identities=9% Similarity=0.049 Sum_probs=129.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIF---NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
|..|.+.+........++....-.+.|.+..+ +.+....|.+.+...+.-.+...+..++.+| +|.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 44454444444444555556666788887544 3344566778888888888999999999999 7999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.++=...++++ ++++.+.+...+.++-.+.......-|+++.+++ |-..+
T Consensus 299 ~~iRi~~~~~~------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~------rlsAt 348 (412)
T PF01306_consen 299 MAIRIIGSGFA------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDK------RLSAT 348 (412)
T ss_dssp HHHHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G------GGHHH
T ss_pred HHHHHHHHhhh------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hHHHH
Confidence 88777777776 4678899999999999999999899999999963 22234
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 181 FFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 181 ~~~~-~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+.+ ++....+|.++.+.++|++.++.|++..|++.+.+.+...++..+.
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence 4554 3566788999999999999999999998888776665555554443
No 225
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.27 E-value=1.7e-05 Score=84.35 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=94.0
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
....+.|+++.+|.+..+.+++.....++..++.++.+++.|| +||+... ......++.+.........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVICCLLAGLLMWIPGWFG-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence 4456678888899999999998888888888899999999999 5743322 2222222222221111000
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
..+.+.++.+.++.+++.+...|...++..|.+|+ ..+...++.....++|..+++.+++.+
T Consensus 296 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 296 -----------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-------LAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 02345567778888999998888888888887751 123456777778899999999999887
Q ss_pred ccccchhh
Q 007827 204 QSDVSWAW 211 (588)
Q Consensus 204 ~~~~g~~~ 211 (588)
.....+..
T Consensus 358 ~~~~~~~~ 365 (394)
T PRK11652 358 PQTGQFSL 365 (394)
T ss_pred cCCchHHH
Confidence 76544443
No 226
>PRK11462 putative transporter; Provisional
Probab=98.27 E-value=1.2e-05 Score=87.69 Aligned_cols=153 Identities=11% Similarity=0.100 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
.++..+...........|.+..+|. +...+.+...+.++..++.+++++++|| +|+|+.+..+..+..+...+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~ 314 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVP 314 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444333344444444444553 3344566777888888999999999999 6999887655544433333332221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhhhHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 191 (588)
. .+...+++..++.|++.+...+...++++|..+.++ ...+|.-+..++...+...+
T Consensus 315 ~----------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl 372 (460)
T PRK11462 315 M----------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL 372 (460)
T ss_pred h----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH
Confidence 1 222233444556677777777766778888765321 12222334556777778889
Q ss_pred HHHHHHHHHHHhccccch
Q 007827 192 AMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 192 g~~i~~~i~~~~~~~~g~ 209 (588)
|..+++.+++.+....|+
T Consensus 373 g~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 373 GLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999888877655444
No 227
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.26 E-value=2e-05 Score=82.04 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
..-+...++++.-...+-+|-.+.||+|..+.+.+......+..++....|++..|..+++++..+++....++..+..+
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33455566666667788899999999999999999999999999999999999885578888888898888888777666
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
+... .+.+.+..+.+++|++.|.+.....+...|+..+. + .+...+.+.....
T Consensus 295 a~~~---------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~---~---aG~~mG~WGaaQA 347 (403)
T PF03209_consen 295 AGPL---------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG---R---AGLFMGAWGAAQA 347 (403)
T ss_pred HHhc---------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc---c---hhHHHHHHHHHHH
Confidence 6431 34678899999999999999998889989887532 2 2467888888888
Q ss_pred HHHHHHHHHHHHhccc----------cchhhHHHHHHHHHHHHHHHH
Q 007827 191 FAMMISLTVIVYVQSD----------VSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++..++..+++.+.+- .+|..+|.+-+++.++++.+.
T Consensus 348 ~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 348 IARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877765321 346777777776666665544
No 228
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.19 E-value=8.9e-06 Score=84.95 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=119.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccchhHHHHHHH-
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYKTLGFASV- 99 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~~l~~~~~- 99 (588)
+.+..+..+.+...+++-.=.+++++|++ .+|.+....+.+-...-+...+.+|+.|..+||. +||||-+++...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 55555666666667776666788899985 7899999999888888899999999999999963 688887666544
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+.+++.++...+.++.. ..+|+.+.- ........++++..+.=++.-....++-+++.|+..+++..++
T Consensus 111 ~i~~~l~Lig~aaDig~---~lgd~~~~~----~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~---- 179 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGL---LLGDNERKP----VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR---- 179 (498)
T ss_pred HHHHHHhhhhhHhhhhH---HhcCCcccc----cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc----
Confidence 45556666666544332 222333210 1124566777777777788877777789999999976443332
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
+.+++.....+|+.+|+.+++|.
T Consensus 180 -Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 -ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -cchhHHHHHHhcceeeeeccccc
Confidence 47777788999999998888754
No 229
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.17 E-value=1.9e-05 Score=86.39 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=93.6
Q ss_pred hHHHHHHHhhhhhhhhHhhhh-hccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchH
Q 007827 380 MLGLTIWIPIYDRIIVPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSG 458 (588)
Q Consensus 380 ~i~~~~~~~l~~~~~~~~~~~-~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (588)
.++..+..++..+ +.|| +||| +.+.++.++.++++++.+.. .+.
T Consensus 58 ~~~~~~~~~~~G~----laDr~~G~~-------~~l~~~~~~~~~g~~~~~~~------------------------~~~ 102 (475)
T TIGR00924 58 SALVYLLTSVGWW----FGDRVWGTK-------KTMVLGGIVLMLGHFMLAMS------------------------IYP 102 (475)
T ss_pred HHHHHHHHhhHHH----HHHhhcchH-------HHHHHHHHHHHHHHHHHHhc------------------------ccH
Confidence 3333444444333 4888 6766 67778888888887766652 234
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhccCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCc
Q 007827 459 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM---RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 535 (588)
Q Consensus 459 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~---rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 535 (588)
+.++...++.+++.++..+....++.+++|++. |+++.++.+...++|..+++.+.+.+.+..
T Consensus 103 ~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-------------- 168 (475)
T TIGR00924 103 DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-------------- 168 (475)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 455566778889999888999999999998754 888999999999999999999999887543
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 536 KGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 536 ~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
++++.|.+.++..+++.+.++...+
T Consensus 169 --g~~~~f~~~~~~~~~~~l~~~~~~~ 193 (475)
T TIGR00924 169 --GYHVGFNLAAVGMVIGLLTFFAGRH 193 (475)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456777766655555544444433
No 230
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.15 E-value=0.0017 Score=68.30 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
.+.|.++..++..|+..+......+..+.|..|++.|..++|...++-.+|..+++.+.-.+.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 355666667777788788888888888899999999999999999999999888887775554
No 231
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.11 E-value=0.00011 Score=72.59 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=104.0
Q ss_pred HhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCC
Q 007827 39 GTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLH 118 (588)
Q Consensus 39 ~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 118 (588)
+.|.+..+- ..+++.+|+|.+|...+.....++..++ ++.|.+.|+ +|.+.++.+|.+...+|....+++..-
T Consensus 17 t~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~---- 89 (250)
T PF06813_consen 17 TTYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSG---- 89 (250)
T ss_pred cccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 445555444 4567899999999999999999999875 888999999 699999999999999999888876431
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHH
Q 007827 119 PPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLT 198 (588)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 198 (588)
..+....+.+.+..++.+.+.+.+.+.......+.||+ .|. ...++.-....+++.+=..
T Consensus 90 -------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~---~RG----~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 90 -------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR---SRG----TVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred -------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc---ccC----ceehhhhHHHHhHHHHHHH
Confidence 11113456667767777777666666666666788973 222 3344443344445544333
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 199 VIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 199 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+...+.+...-...+.+.....+++++...+
T Consensus 150 i~~~~f~~~~~~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 150 IYSAFFGDDPSSFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333322333333333333344433333
No 232
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.03 E-value=6.5e-05 Score=81.81 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=81.4
Q ss_pred Hhhhhh-ccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHh
Q 007827 396 PRLQRL-TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 474 (588)
Q Consensus 396 ~~~~~~-~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 474 (588)
.+.||+ ||| +.+.+|.++..++.++++... .+.........+..++.++
T Consensus 67 ~LaDRilGrr-------r~iliG~il~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 67 FLADKVLGNR-------MAVMLGALLMAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HHHHHccCcH-------HHHHHHHHHHHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhccc
Confidence 348887 765 567788888777765554310 1112233344455566677
Q ss_pred HhhhhhhhhhccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHH
Q 007827 475 TIIAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLL 552 (588)
Q Consensus 475 ~~~~~~~~~~~~~P~~--~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~ 552 (588)
..+...+++.|.+|++ .|+++.+++++..++|+.+++.+.+.+.+.. ++++.|...++..++
T Consensus 117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l 180 (493)
T PRK15462 117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIA 180 (493)
T ss_pred ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHH
Confidence 7777788999999975 7999999999999999999999999886533 345677776555555
Q ss_pred HHHHHHhhh
Q 007827 553 NFGFFLLCA 561 (588)
Q Consensus 553 ~~~~~~~~~ 561 (588)
+.+.+++..
T Consensus 181 ~li~~~~~~ 189 (493)
T PRK15462 181 GLVIFLCGN 189 (493)
T ss_pred HHHHHHHhh
Confidence 555544433
No 233
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.02 E-value=6.3e-05 Score=82.54 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=74.0
Q ss_pred hhhh-hccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhH
Q 007827 397 RLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 475 (588)
Q Consensus 397 ~~~~-~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 475 (588)
+.|| +||| +.+.+|.++..++.+..+... .....++...++.+++.++.
T Consensus 73 laDr~~G~r-------~~~~~g~~~~~~g~~~~~~~~-----------------------~~~~ll~~~~~l~~ig~g~~ 122 (489)
T PRK10207 73 VGDHLLGTK-------RTIVLGAIVLAIGYFMTGMSL-----------------------LKPDLIFIALGTIAVGNGLF 122 (489)
T ss_pred hhhhccchH-------HHHHHHHHHHHHHHHHHHHhc-----------------------cchhHHHHHHHHHHhccccc
Confidence 4887 7776 678888888888877766531 11223445677789999999
Q ss_pred hhhhhhhhhccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 476 IIAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 476 ~~~~~~~~~~~~P~~--~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
.+...+++.|++|++ .|+++.+++.+..++|..+++.+.|.+.+.
T Consensus 123 ~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~ 169 (489)
T PRK10207 123 KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK 169 (489)
T ss_pred cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999877 457789999999999999999999998764
No 234
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.98 E-value=4.3e-05 Score=86.41 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
.+..++++-++.|+|.+...+....++.|.+|++.|+++.|+......+|..+++.+++.+.+.
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 3556677889999999999999999999999999999999999999999999999999887754
No 235
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.98 E-value=0.00014 Score=78.84 Aligned_cols=171 Identities=12% Similarity=0.040 Sum_probs=101.9
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhh----hhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccccc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQ----RLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQR 449 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~----~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (588)
.+....++..++..|+.+.+ .| |+|||+ ..+..+.+...+++.++++............+
T Consensus 43 ~i~~~~~l~~~i~~Pi~G~l----SDr~~sr~GRRr------p~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~------ 106 (477)
T TIGR01301 43 IIWLCGPLSGLLVQPLVGYL----SDRCTSRFGRRR------PFIAAGAALVAFAVILIGFAADIGHLFGDNLD------ 106 (477)
T ss_pred HHHHHHHHHHHHHHhHeeeh----hcCCCCCCCChH------HHHHHHHHHHHHHHHHHHhCchhhhhcccccc------
Confidence 33444566666777776665 66 466652 23344556666666666553211000000000
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHhh--hhcc--C
Q 007827 450 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR--SIGGSLAFVGFAISNYLNGFLISMVH--RFTK--G 523 (588)
Q Consensus 450 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~r--g~~~~~~~~~~~ig~~l~~~~~~~l~--~~~~--~ 523 (588)
+.......+..+..+.+..++.....++.-+++.|.+|++.| +.+.+......++|+.++..+.+... +..+ .
T Consensus 107 -~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~ 185 (477)
T TIGR01301 107 -KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTK 185 (477)
T ss_pred -ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccc
Confidence 000111123344445555667777778888999999998866 57888888889999999998887642 1111 0
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007827 524 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 566 (588)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~ 566 (588)
+...+.+| .++...|++.+++.+++..+.++..+|...
T Consensus 186 ~~~~~~~~-----~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 186 TEACGVSC-----ANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred cccccccc-----chHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 11112222 257788999888888998888888888654
No 236
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.96 E-value=0.00022 Score=70.92 Aligned_cols=147 Identities=21% Similarity=0.259 Sum_probs=104.2
Q ss_pred hhhhHHHHHHHhcCCCc--hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 43 TSSNLLVYLTTIFNMKS--ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
.....+.+. .+++.+. ...+++.+.+.+...++.++.|.++|| +|||+.+..+.....++.+.+.+...
T Consensus 21 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~------- 91 (338)
T COG0477 21 LSPALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN------- 91 (338)
T ss_pred HHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-------
Confidence 334444444 3455455 478899999999999999999999999 59998888777664555444444321
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH-HHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF-TFTFAMMISLTV 199 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~i 199 (588)
.....+++.|.+.|++.+...+...+++.|.+++ + ..++...+.... ...+|..+++.+
T Consensus 92 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 92 ---------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE----A-TERGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred ---------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc----h-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788899999999999999999999999863 1 233455666555 467788888877
Q ss_pred HHHhccc--cchhhHHHHHHH
Q 007827 200 IVYVQSD--VSWAWGLGIPAF 218 (588)
Q Consensus 200 ~~~~~~~--~g~~~~~~~~~~ 218 (588)
++.+... .+|++.|.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 152 AGLLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHH
Confidence 7665543 568885555444
No 237
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.93 E-value=0.0027 Score=66.91 Aligned_cols=156 Identities=12% Similarity=-0.008 Sum_probs=102.0
Q ss_pred hhhhHHHHHHHh-cCCCchhhhH-HHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 43 TSSNLLVYLTTI-FNMKSITATT-LINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 43 ~~~~l~~yl~~~-~g~s~~~~~~-~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
.-+++..|+++. .|++..+... +.=+..-.+.+..++...++|. +|.|++++++.+...+...++...
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 346788899886 8999999863 4444455556677788899999 799999999988877777666665
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
.+...+-+.-++.|++.+.-. +..+++=...+ +.+-+ .+.+......-+|..++..++
T Consensus 92 ---------------~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v~---~~~yq---~vts~~raa~l~g~~~s~~lg 149 (412)
T PF01770_consen 92 ---------------TSVLAMQLMQFFYGLATAAEV-AYYSYIYSVVD---KEHYQ---KVTSYTRAATLVGRFISSLLG 149 (412)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHH-HHHHHheeecC---HHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777776632 24455444443 22222 235555556666666666666
Q ss_pred HHhcc--ccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 201 VYVQS--DVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 201 ~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
-.+.. ..++....++......+++++.++.
T Consensus 150 Qllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 150 QLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 55443 3456777777766666666655543
No 238
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.92 E-value=3.5e-05 Score=83.83 Aligned_cols=164 Identities=13% Similarity=0.004 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc----cchhHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF----GRYKTLGFASVAS 101 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~----Grr~~l~~~~~~~ 101 (588)
++...+..++.....|+...++|.|+++..|+|..+++.+...+.++..++.+++|+++|| + .+|......+.+.
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr-~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR-LKTIFARRLLFIVFLCLY 353 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Confidence 3556677888888899999999999998778999999999999999999999999999999 3 4454444444333
Q ss_pred HHHH-HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 102 FLGM-LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 102 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.+.. ..+.... .......+......+.+...+++.....+.... ..+..+.
T Consensus 354 ~~~g~~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g----~~k~~~~ 405 (495)
T KOG2533|consen 354 AIIGAISLLAAA------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAG----NTKALTT 405 (495)
T ss_pred HHHHHHHHHhhc------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccc----hHHhHHH
Confidence 3222 2222211 111222222333344455555666666666632 1222222
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHH
Q 007827 181 FFNWYYFTFT-FAMMISLTVIVYVQSDVSWAWGLGIPAFM 219 (588)
Q Consensus 181 ~~~~~~~~~~-~g~~i~~~i~~~~~~~~g~~~~~~~~~~~ 219 (588)
.+.+..+.+ .|.+.+++.-+.....++|...|.+....
T Consensus 406 -~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~ 444 (495)
T KOG2533|consen 406 -VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAA 444 (495)
T ss_pred -HhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHH
Confidence 222222333 33333444445555667888888554433
No 239
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.91 E-value=0.00016 Score=79.59 Aligned_cols=124 Identities=9% Similarity=0.103 Sum_probs=86.5
Q ss_pred hHhhhh-hccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHH
Q 007827 395 VPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEA 473 (588)
Q Consensus 395 ~~~~~~-~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 473 (588)
.++.|| +|+| +.+..+.++.+++..++... ..+...+....++.+++.+
T Consensus 78 G~LaDr~~G~r-------~~~~~g~~~~~ig~~l~~~~-----------------------~~~~~~l~~~~~l~gig~g 127 (500)
T PRK09584 78 GWLGDKVLGTK-------RVIMLGAIVLAIGYALVAWS-----------------------GHDAGIVYMGMATIAVGNG 127 (500)
T ss_pred HHHHHhccchH-------HHHHHHHHHHHHHHHHHHHh-----------------------cccHHHHHHHHHHHHHhhh
Confidence 345888 4765 56777777777776666542 1123344556677888888
Q ss_pred hHhhhhhhhhhccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHH
Q 007827 474 FTIIAEVEFYYKQFPENM--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGL 551 (588)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~--rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~ 551 (588)
+..+....++.+.+|++. |+.+.+++++..++|..+++.+.+.+.+.. ++++.|.+.++..+
T Consensus 128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~----------------g~~~~F~i~~i~~~ 191 (500)
T PRK09584 128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY----------------GWSVAFALSVVGML 191 (500)
T ss_pred cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHH
Confidence 888888899999998643 456788889999999999999999987643 34677877766556
Q ss_pred HHHHHHHhhhccc
Q 007827 552 LNFGFFLLCAKWY 564 (588)
Q Consensus 552 ~~~~~~~~~~~~~ 564 (588)
++.+.+++..+..
T Consensus 192 i~~i~~~~~~~~~ 204 (500)
T PRK09584 192 ITVVNFAFCQRWV 204 (500)
T ss_pred HHHHHHHHhHHHh
Confidence 6555555444333
No 240
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.0002 Score=74.16 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=107.1
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
.+-++++.|+.+..|++..++....+.+..+.++|..++-++-.| +-..|.+.+.++...+-.+...++.
T Consensus 254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~--------- 323 (422)
T COG0738 254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG--------- 323 (422)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 355789999988899999999999999999999999999999889 6888888776655444334444431
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
+ ...+.+.++.|+..+.++|++.++..+..++ ..+. -+..-....+|+++-|.+.|
T Consensus 324 ---------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~--~ts~------~s~~l~maivGGAiiP~l~G 379 (422)
T COG0738 324 ---------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGE--HTSV------GSGLLVMAIVGGAIIPPLQG 379 (422)
T ss_pred ---------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCc--cccc------cceeeeeheecchHHHHHHH
Confidence 1 2345566778999999999999999998873 2222 22222345689999999999
Q ss_pred HhccccchhhHHHHH
Q 007827 202 YVQSDVSWAWGLGIP 216 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~ 216 (588)
++.+..|-...+.+.
T Consensus 380 ~i~d~~g~~~~~~~~ 394 (422)
T COG0738 380 VIADMFGIQLTFLIV 394 (422)
T ss_pred HHHHhhhhHHHHHHH
Confidence 999999887776633
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.87 E-value=0.018 Score=61.59 Aligned_cols=187 Identities=13% Similarity=-0.012 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+-...++.+.+--++-...+.|+.+.+.-+---.+..-..-.+...+..+.-|...|| .-|.|++..+.+.--+..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHH
Confidence 3444555566666666666667788877765455555555556667777888888999999 599998877766533222
Q ss_pred HH----HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHH-HHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 106 LV----LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL-GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 106 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.+ +......+. .... .......+++.. .+..+..=+......+.=.|+...-...++..++.
T Consensus 83 ~~s~~~~~~l~~~~~----------~~~~---~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~ 149 (432)
T PF06963_consen 83 AASCALFLLLLSYPS----------SSSQ---SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALAR 149 (432)
T ss_pred HHHHHHHHHHHhCCc----------cccc---cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHH
Confidence 11 111111000 0000 011122222222 22222222222222233344443322223444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
..+...=.=.+--.++|++.|.+....|......+.++..++++.+
T Consensus 150 ~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 150 MNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 4554444445788899999999999889888877777777666664
No 242
>PTZ00207 hypothetical protein; Provisional
Probab=97.87 E-value=0.00033 Score=77.77 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=89.6
Q ss_pred hhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHH
Q 007827 394 IVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEA 473 (588)
Q Consensus 394 ~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 473 (588)
..++.||+|+| +.+.++.++..++.++.+.... + ....+.+.+.+..++.|+|.+
T Consensus 81 ~G~L~Dr~G~R-------~vllig~ll~~iG~ll~ala~~---------~---------~i~~s~~~l~l~r~l~G~G~~ 135 (591)
T PTZ00207 81 YSFIYDYLGPR-------PIFVLSMTVFCLGTLLFALTFQ---------E---------VIEGSVVRLSVYNGLMTLGCM 135 (591)
T ss_pred HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHhc---------c---------cccCcHHHHHHHHHHHHHHHH
Confidence 34568888776 6788888888888877776311 0 011356677777888899988
Q ss_pred hHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 007827 474 FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 553 (588)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~ 553 (588)
...+.......+.+| +.||++.|+......+|..+.+.+...+... +....|++.+++.++.
T Consensus 136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------------~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------------NTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHH
Confidence 888888888888887 5699999999999999998655555444321 2345677777777766
Q ss_pred HHHHHhhhccc
Q 007827 554 FGFFLLCAKWY 564 (588)
Q Consensus 554 ~~~~~~~~~~~ 564 (588)
.++.+.+.+..
T Consensus 198 ~ll~~~~vr~p 208 (591)
T PTZ00207 198 GILAIVFMRLP 208 (591)
T ss_pred HHHHHhheeCC
Confidence 66555555443
No 243
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.86 E-value=7.4e-05 Score=59.71 Aligned_cols=67 Identities=22% Similarity=0.159 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
..++...+.....++++.|++ +.|+|+.+.|.+.++..+...+++++.|+++|| +||+|.++.....
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence 334445555567789999987 599999999999999999999999999999999 6999988766544
No 244
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.83 E-value=0.00078 Score=72.12 Aligned_cols=90 Identities=10% Similarity=0.066 Sum_probs=76.9
Q ss_pred hhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHh
Q 007827 397 RLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 476 (588)
Q Consensus 397 ~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 476 (588)
+.||++.| +.+.++++..++..++.++. .+...+.+.-++.|++++...
T Consensus 85 LaDrlG~K-------~vL~l~~l~Wsl~t~L~~fa------------------------~Sl~~L~i~R~llGvaEA~~~ 133 (511)
T TIGR00806 85 LTDYLRYK-------PVLVLQALSFVCVWLLLLLG------------------------TSVWHMQLMEVFYSVTMAARI 133 (511)
T ss_pred HHHHhCch-------HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 48887766 56777777777777776664 367788888999999999999
Q ss_pred hhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 477 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 477 ~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
....+++..+|++.|++++|+++.+..+|..+++.+.+.+.
T Consensus 134 -A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 134 -AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred -HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999843
No 245
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.68 E-value=0.00016 Score=74.12 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=83.0
Q ss_pred hhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 007827 375 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 375 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
++...++.-.+..|+.+. +.|+.||| ..+.+|.+..++++.+.+..
T Consensus 73 lGSsF~ilQ~~sS~~~G~----~SD~yGRk-------pvll~c~~~va~s~ll~~~S----------------------- 118 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGC----LSDRYGRK-------PVLLACLIGVALSYLLWALS----------------------- 118 (451)
T ss_pred HhhHHHHHHHHhhhhhhh----hhhhhCch-------HHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 344444444455555444 48888888 67778888888877777653
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
.++..++.+=++.|++.+...+. .+++.|.++++.|+.+++....+..+|.++||.+++++..
T Consensus 119 -~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 -RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 45555666677888887776554 6899999999999999999999999999999999998865
No 246
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.64 E-value=0.00014 Score=79.39 Aligned_cols=136 Identities=13% Similarity=-0.081 Sum_probs=100.9
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 007827 52 TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACP 131 (588)
Q Consensus 52 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (588)
++.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++.+++.+...+...--... .
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------------~ 346 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA------------F 346 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc------------c
Confidence 45799999999999999999999999999999999 6999999998888877665432211000000 0
Q ss_pred CCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccc
Q 007827 132 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS 208 (588)
Q Consensus 132 ~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g 208 (588)
+. .+....+..-++.+++.+....+...++.+..|++.+ ++.++++....++|..+++.+++++.++.|
T Consensus 347 gi--~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~e------gt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 347 GI--SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCE------SSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CC--CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCce------ehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 0122344556677788888778888999998874322 356999999999999999999999987766
No 247
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.62 E-value=0.045 Score=59.33 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=89.0
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCC-----chhhhHHHHHHHHHHHHh-hhhhhhhhhccccchhHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMK-----SITATTLINIFSGTTNFA-TLLGAFLSDTYFGRYKTLGF 96 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s-----~~~~~~~~~~~~~~~~~~-~~~~G~lsDr~~Grr~~l~~ 96 (588)
++......+..++-.+.|+. .--+++.+..+ .....++.+...+...+. .++.+++++| ++|++.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~i-----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTI-----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 34444444444444444332 23345666553 345666666665655555 8899999999 699999887
Q ss_pred HHHHHHHHHHHHHHhhc-cccC-C-CCCCCCCCCCCCCCC-------CchhHHHHHHHHHHHHhhcccccccchhhcccc
Q 007827 97 ASVASFLGMLVLSLTAA-ISKL-H-PPDCGNQDSGACPGP-------TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQ 166 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~ 166 (588)
....+.....++++.-. .++. | +..||.+...-.++- ..+....+++..-+.| .-...-...++..|.
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~--~~vvS~lFW~fandi 157 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG--SVVLSLLFWGFANQI 157 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 76666655555444311 1111 1 001111111100000 0111112222222221 111111456777888
Q ss_pred CCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 007827 167 FNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ 204 (588)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~ 204 (588)
++. ++.+ +.++.++.+.|+|..+++.+..++.
T Consensus 158 ~t~--~qak----Rfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 158 TTI--DEAK----RFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CCH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 2222 4799999999999999999888876
No 248
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.60 E-value=0.0017 Score=71.86 Aligned_cols=137 Identities=13% Similarity=0.292 Sum_probs=94.3
Q ss_pred hhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 007827 373 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 452 (588)
Q Consensus 373 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (588)
.|+...+.+...+..|+++++ .|.+||| ..+..|.++..++.++.+..
T Consensus 81 ~w~~~~~~l~~av~~~~~G~L----SDlfGRr-------~~~i~g~~l~vvG~Iv~atA--------------------- 128 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRL----SDLFGRR-------YFFIIGSLLGVVGSIVCATA--------------------- 128 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHH----HHHhcch-------HHHHHHHHHHHhHHHHhhcC---------------------
Confidence 355566677777777776555 9999988 67788888888888877643
Q ss_pred cccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCC
Q 007827 453 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 532 (588)
Q Consensus 453 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~ 532 (588)
.+...++.+..+.|+|.+.... ....+.|..|.|.|..+.++......+....++.+...+... ..|
T Consensus 129 ---~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~------~~W--- 195 (599)
T PF06609_consen 129 ---QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH------SGW--- 195 (599)
T ss_pred ---CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC------CCc---
Confidence 4566788889999998766654 355588999999998887776654444444555555444321 134
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 533 DLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 533 ~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
+|.|++.+++..++++...++.
T Consensus 196 -------Rw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 196 -------RWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHh
Confidence 5778887777777766555544
No 249
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.49 E-value=0.00014 Score=77.56 Aligned_cols=156 Identities=8% Similarity=-0.016 Sum_probs=117.7
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
+..+|= +-.++.+-.+.-.|.+......+-.+.-++.++|..| +|+-+++..++....+=.+..+..
T Consensus 390 v~tFLf-WHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L----------- 456 (618)
T KOG3762|consen 390 VFTFLF-WHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYL----------- 456 (618)
T ss_pred HHHHHH-HHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHh-----------
Confidence 334443 3346777777777766666777777888889999999 799999998888777666666655
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH-HHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIV 201 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~i~~ 201 (588)
+|+|+.+..-+++|+..+..+.++.+|+++..|+..++.. -++.. ....+|-.+|.+|+|
T Consensus 457 -------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~------Q~l~~g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 457 -------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATA------QGLLQGIFHGLGKGLGSLIGG 517 (618)
T ss_pred -------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH------HHHHHHHhcccCcchhhhhhh
Confidence 5778889999999999999999999999999985333322 22221 234578888899999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+.+.+|-+..|.+.++.+++.++++...
T Consensus 518 ~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 518 FVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998988888887777666665443
No 250
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.46 E-value=0.0029 Score=70.01 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=59.7
Q ss_pred CccchhHHHHHHHHHHHHhhh-hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTG-TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
.+|.......+..+.+++.+. +..+.+.++ +..|.+... .....+..+...++..++.++.|| +|||+.++.+.+.
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHH
Confidence 344444445555555555433 444455554 456666544 455556667777788888999999 6999999999999
Q ss_pred HHHHHHHHHHhh
Q 007827 101 SFLGMLVLSLTA 112 (588)
Q Consensus 101 ~~i~~~~~~~~~ 112 (588)
+.++.++++...
T Consensus 369 m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 369 MSICLVILAVVG 380 (513)
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 251
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.42 E-value=2.6e-06 Score=92.24 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=97.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH-H
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS-L 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~-~ 110 (588)
+..+..+..+....+...++.+..+.+.. -.......+...++.+++.++.|| +|||+.++.+..+.+++.+.+. .
T Consensus 260 l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~ 336 (451)
T PF00083_consen 260 LQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGII 336 (451)
T ss_pred ccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 33333333333333333444456677666 223334445566777788899999 7999999998888776665554 1
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcc-cccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAG-GIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
....+. ++ ++ .+... ++...+...+.+ +..+....+.+|.||++.+ +.+.++.+...
T Consensus 337 ~~~~~~--------~~----~~---~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R------~~~~~~~~~~~ 394 (451)
T PF00083_consen 337 FFLGVS--------SS----SW---WSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKVR------STGIGLSYAVG 394 (451)
T ss_pred cccccc--------cc----cc---ccccc-ceeeeecccccccccccccccccccccccccc------ccccccccccc
Confidence 110000 00 00 01111 112222222222 3445666888999985222 24466666677
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcccee
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 234 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
.+++++++.+..++.+..+-...+.+.++..++..++..+..|++
T Consensus 395 ~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 395 RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 788888888888877766634444454444445554444444543
No 252
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.26 E-value=0.003 Score=69.94 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=91.5
Q ss_pred hhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHH
Q 007827 394 IVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEA 473 (588)
Q Consensus 394 ~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 473 (588)
..++.|++||| ..+.+++++..++-+..+.. .+++.+++.-++.|++..
T Consensus 138 ~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a------------------------~~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 138 FGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFA------------------------PNYWMFLIFRFLSGFFGS 186 (521)
T ss_pred heehHhhcccH-------HHHHHHHHHHHHHHHHHHHh------------------------CcHHHHHHHHHHHHhhcc
Confidence 44568998887 67777777777776666553 577788888899999999
Q ss_pred hHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 007827 474 FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 553 (588)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~ 553 (588)
......+.+..|..+++.|+.+..+ ......++.+++....++.. +| ++.+++.....++.
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLF 247 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999 77777888888877777654 33 56777777777666
Q ss_pred HHHHHhhhccc
Q 007827 554 FGFFLLCAKWY 564 (588)
Q Consensus 554 ~~~~~~~~~~~ 564 (588)
.+. +++.+|.
T Consensus 248 ~~~-~~l~~Es 257 (521)
T KOG0255|consen 248 LLL-WFLPPES 257 (521)
T ss_pred HHH-HHccCcC
Confidence 555 4444343
No 253
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.082 Score=54.63 Aligned_cols=63 Identities=8% Similarity=-0.043 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 459 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 521 (588)
Q Consensus 459 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~ 521 (588)
...+..+.+.+...-..+.....+-++.+|++..|++|.+-+..+++|+---..+...+.|..
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 344445677776666666777888899999999999999998888877766666666666543
No 254
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00099 Score=70.04 Aligned_cols=179 Identities=11% Similarity=0.003 Sum_probs=113.5
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhH-----H---HHHHHHHHH-HhhhhhhhhhhccccchhHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATT-----L---INIFSGTTN-FATLLGAFLSDTYFGRYKTL 94 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~-----~---~~~~~~~~~-~~~~~~G~lsDr~~Grr~~l 94 (588)
+.+..+....|..-..+|+...+....++ ..|+.+.+... . ..+...+.. .+-.+..+++|+ +|||++.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence 33344444555556677777777766664 45666555444 1 112222222 255667788999 7999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH-HHHhhcccccccchhhccccCCCCCCC
Q 007827 95 GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLG-LMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+-+..++++..+.++...+. ..+...+++... .+-++.-+-.++...+-+|.||.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~--------------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa---- 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ--------------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA---- 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc--------------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchH----
Confidence 99998888776666554220 001111222222 22234444444566677899963
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-----DVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
|.|+...++..+.+-.|+.++.....++.+ ..+.+..|++.+..++++.+..++.
T Consensus 438 --rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 438 --RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred --HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 445678888888889999999999999888 6788999999888887777655443
No 255
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.95 E-value=0.012 Score=53.90 Aligned_cols=112 Identities=10% Similarity=0.096 Sum_probs=80.0
Q ss_pred CchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchh
Q 007827 58 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 137 (588)
Q Consensus 58 s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (588)
++.....-.++......+.+++...+.++ +|.|++++++.+.+++-...... .+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~-------------------------~~ 88 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY-------------------------PN 88 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh-------------------------hh
Confidence 33444455666677778888899999999 79999999998887754333221 35
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 138 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 138 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.++.+-.+.|++.+..++....++.+..++ +.+++..+++....+.+.++|.++.-
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~------~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTE------ETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH------HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999998988875532 22234466666666766666655543
No 256
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.93 E-value=0.0097 Score=64.05 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=105.3
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 453 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (588)
++.+.+.++..+..+.++.+ ..|.+ +-++.+.+|.++++++.++....+..
T Consensus 75 ~viaa~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~------------------- 125 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAYV------------------- 125 (488)
T ss_pred HHHHHHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 44455677777777776554 33332 22466889999999998888555431
Q ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 007827 454 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 533 (588)
Q Consensus 454 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~ 533 (588)
.....+++..+.++.|+|.+... ..=.|+++..-.+.|.++++....+..+|.++||.+.+.+... +.++. .|.+.
T Consensus 126 ~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L-g~~G~-~i~~~- 201 (488)
T KOG2325|consen 126 PNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL-GEKGF-MILPG- 201 (488)
T ss_pred ccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh-cCCce-EEcCc-
Confidence 11256777888999898865543 3456777776667788888888777778888888766655432 21111 23331
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 534 LNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 534 ~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
..=+.+...-|+.+++.++..++.+++.+|......
T Consensus 202 ~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~ 237 (488)
T KOG2325|consen 202 LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGII 237 (488)
T ss_pred ceEEecchHHHHHHHHHHHHHHHHHhheeecccCcc
Confidence 111235556778888888888888888887755443
No 257
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0011 Score=70.78 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCc--
Q 007827 412 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-- 489 (588)
Q Consensus 412 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~-- 489 (588)
+.+.+|.++++++.++++... ......+.+++++..+|.++.-++...++.|++|+
T Consensus 93 ~tI~lGail~~iGh~~L~~~~----------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS----------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc----------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 678889999999988887621 02344666778888899999999999999999874
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 490 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 490 ~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
..|..+.+++.++-++|+.+++.+.+.+.+.. ++...|...++-...+.+.++++.|+.+....
T Consensus 151 prrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 151 PRRDGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred cccCCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence 22677888888899999999999999987653 45677888888888888888888887776654
Q ss_pred CC
Q 007827 570 GD 571 (588)
Q Consensus 570 ~~ 571 (588)
.+
T Consensus 215 ~~ 216 (498)
T COG3104 215 VP 216 (498)
T ss_pred CC
Confidence 43
No 258
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.89 E-value=0.0061 Score=49.35 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=59.9
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
.+.+.+.+| .+.++.++|.++++++.+...+++.+|++.+.++.++ ..+++.+..++++..+....+++..
T Consensus 8 RFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 8 RFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555 5567899999999999999999999999999999999 5888889898888888888888763
No 259
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.71 E-value=0.012 Score=61.95 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=92.0
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchh-HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYK-TLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
..|.+...+|.+.....+++++++.++|.+.||. ..-| ++++......++. ++.....+-
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~-~~l~~~t~~----------------- 355 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGT-LMLLTCTLF----------------- 355 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHH-HHHHHhhcc-----------------
Confidence 4567778899999999999999999999999994 4333 3333333333332 111111100
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccc----
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---- 208 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g---- 208 (588)
....+.++..-.++|.+.-+..|.-.-+..|...+..++.. .|+.....++-+++=..+.+...+..+
T Consensus 356 --~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tS------sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~ 427 (480)
T KOG2563|consen 356 --LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTS------SGLLNLSGQIFGVILVFIMGILAEDLGPPGN 427 (480)
T ss_pred --CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCccc------ceeEEeehhHHHHHHHHHHHHHhhccCCCCC
Confidence 02334566666777888888888877777776654333322 344444455555555566666666655
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccceeec
Q 007827 209 WAWGLGIPAFMMFLSCAMFFLGSRLYAK 236 (588)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
+...-+......++.+++..+.++++++
T Consensus 428 ~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 428 TFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 4433333444444555555666666543
No 260
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.50 E-value=0.017 Score=65.37 Aligned_cols=96 Identities=26% Similarity=0.378 Sum_probs=76.6
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 007827 450 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW 529 (588)
Q Consensus 450 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~ 529 (588)
...+...+.+|.++++.+.+.+|.+......++.++++|++||+..++++.+..++|+.+...+...-..
T Consensus 557 ~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~---------- 626 (654)
T TIGR00926 557 LVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENF---------- 626 (654)
T ss_pred ecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------
Confidence 3446778999999999999999999999999999999999999999999999999999999887754321
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 530 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 530 ~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
.....-|..++++.++..+++....+
T Consensus 627 -------~~~~~~~~~~~~~~~~~~~~f~~~a~ 652 (654)
T TIGR00926 627 -------SVQAAEFFLFASLMLVVMAIFSILAY 652 (654)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12335566666666666666555543
No 261
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.20 E-value=0.14 Score=50.71 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=66.9
Q ss_pred hhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHh
Q 007827 397 RLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 476 (588)
Q Consensus 397 ~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 476 (588)
+.|+.+ +...+.+|.+...+++.+.....+ +...+.+.|.+.....+.+.+.....
T Consensus 59 l~d~~g-------p~~~l~iG~~~~~~GY~~~~l~~~-----------------~~i~~~~~~~~~~~~~l~~~s~~~~~ 114 (250)
T PF06813_consen 59 LYDRFG-------PWVVLLIGAVLGFVGYGLLWLAVS-----------------GRIPSLPVWLMCLFLFLGGNSSCWFN 114 (250)
T ss_pred HHHhcc-------hHHHHHHHHHHHHHHHHHHHHHHh-----------------CccCccchHHHHHHHHHHcccHHHhh
Confidence 467654 346778888888888766654321 11223566666666666666766666
Q ss_pred hhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 477 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 477 ~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
+....-..+-+|. .||++.|+.....++++.+-+.+.-.+..
T Consensus 115 ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 115 TASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred hHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 6655555578886 69999999999999998888877766653
No 262
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.02 E-value=0.042 Score=58.02 Aligned_cols=125 Identities=16% Similarity=0.090 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcc-
Q 007827 412 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN- 490 (588)
Q Consensus 412 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~- 490 (588)
+.+.+|.++..+|.+++..... +... ..+.+...+.+++.+.++|.++.-|+...+..|+++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~------~~~~---------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAI------PPSL---------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHT------SSSC---------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHh------cchh---------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 4566778888888777554321 0000 01234557778888999999999999999999999865
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 491 --MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 491 --~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
.|..+...+..+.++|..++..+.+++.+.. ++...|.+.++..+++.+.++...++++.+
T Consensus 67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhhhHHHHHHHHhhhhHhhcccchhhcccc----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 5677778889999999999999888887532 556788888888888888877776666554
No 263
>PRK03612 spermidine synthase; Provisional
Probab=95.96 E-value=0.27 Score=54.39 Aligned_cols=161 Identities=10% Similarity=0.001 Sum_probs=85.7
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH---HHHHHHh
Q 007827 35 FEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG---MLVLSLT 111 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~---~~~~~~~ 111 (588)
...++.-..-....-.+...+|-+....+.+++++..+..+|..++|+++++ .-|+.. .+-+.+..++ ..++...
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~-~~e~~i~l~~~~~~~ll~~~ 102 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFV-AVELLLALLGGLSALILYAA 102 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444555556689999999999999999999999999988755 233322 2211111111 1111111
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
.... ......++...++.++..|+..|...-+..+.. . +..+...+-.|....+
T Consensus 103 ~~~~-------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~----~---~~~g~~~g~ly~~ntl 156 (521)
T PRK03612 103 FAFQ-------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR----D---QHLGHNVATVLAADYL 156 (521)
T ss_pred HHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c---cchhhhhhhhHhHHhH
Confidence 1000 001112233344556777776665544443311 1 0112346677788899
Q ss_pred HHHHHHHHHHHhc-cccchh-hHHHHHHHHHHHH
Q 007827 192 AMMISLTVIVYVQ-SDVSWA-WGLGIPAFMMFLS 223 (588)
Q Consensus 192 g~~i~~~i~~~~~-~~~g~~-~~~~~~~~~~~~~ 223 (588)
|+++|.++.+++. ...|-. ..+.+..+..+++
T Consensus 157 Ga~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 157 GALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999988654 356744 4443333333333
No 264
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.85 E-value=0.0016 Score=72.08 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=2.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 454 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 454 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
....+..++++.++.|+|.....+...+|+.|.++++..+.+.|+......+|..+|-.+++.+.+
T Consensus 137 ~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 137 LSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ---------------SSS------------------------------------------------
T ss_pred chHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 334556778889999999999999999999999999999999999999999999999888876654
No 265
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=95.80 E-value=0.23 Score=53.96 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=68.0
Q ss_pred HHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHH
Q 007827 471 SEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALG 550 (588)
Q Consensus 471 ~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~ 550 (588)
+.+......++++++....+.|....|+.+.+...+..+++.+.+...... ++..+|.+.++..
T Consensus 125 ~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~----------------~~a~~f~ia~~~~ 188 (463)
T KOG2816|consen 125 GFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL----------------GIALVFLIAAASG 188 (463)
T ss_pred chhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----------------CchHHHHHHHHHH
Confidence 345566677899999999999999999999999999999999998887543 5567888888888
Q ss_pred HHHHHHHHhhhccccccCC
Q 007827 551 LLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~ 569 (588)
++..+..+++.+|...++.
T Consensus 189 ~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 189 ILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred HHHHHHHhhccccccCccc
Confidence 8888888888887654433
No 266
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.36 E-value=0.15 Score=57.63 Aligned_cols=103 Identities=10% Similarity=0.110 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---------CCC
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG---------AST 526 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~---------~~~ 526 (588)
..+..++.+.++.|+|.-...+...+|+.|-+.++.-..+.|+.+....+|-++|-.+++.......+ +.+
T Consensus 235 ~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~D 314 (735)
T KOG3626|consen 235 YPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTD 314 (735)
T ss_pred hhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCC
Confidence 35557778899999999999999999999999999999999999999999999999888877654322 233
Q ss_pred CCCCCCCCccchhHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 007827 527 GDWLPEDLNKGRLDYF-YYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 527 ~~~~~~~~~~~~~~~~-f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
..|+ +-.|. |++.+.+.++..+.++++-++.+
T Consensus 315 PrWI-------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 315 PRWI-------GAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred cchh-------hHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 3444 33443 55566666666555555544443
No 267
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=95.17 E-value=1.8 Score=44.88 Aligned_cols=140 Identities=14% Similarity=-0.003 Sum_probs=78.3
Q ss_pred hhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch
Q 007827 378 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS 457 (588)
Q Consensus 378 ~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (588)
......++++++.+ .+.||.||| +...+.-++.+++.+..- ..+
T Consensus 77 ~Gf~Ss~i~g~~~G----~laD~~Grk-------~~cl~~cily~~scl~k~-------------------------~~~ 120 (354)
T PF05631_consen 77 AGFASSAIFGTFVG----SLADRYGRK-------KACLLFCILYSLSCLTKH-------------------------SSN 120 (354)
T ss_pred HHHHHHHHHHHHHH----HHHHhcCch-------HHHHHHHHHHHHHHHHHh-------------------------ccc
Confidence 33444556666644 459999987 344444344444433211 245
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhh-----hhhccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCCCCCC
Q 007827 458 GLWLIPQLSLIGFSEAFTIIAEVE-----FYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWLP 531 (588)
Q Consensus 458 ~~~~i~~~~l~~~~~~~~~~~~~~-----~~~~~~P~~~rg~~~~~~~-~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~ 531 (588)
...+++.=++.|++..+.+..-=+ .-..-+|++..+...+... ..+.+-.++++.+...+.+..+.
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~-------- 192 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF-------- 192 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC--------
Confidence 667777778888877665554222 2223466666666555554 44555666666666665554321
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 532 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 532 ~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
+..+.|.....+.+++.++.....+|..+.
T Consensus 193 ------g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 193 ------GPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 123566666666666666666566555443
No 268
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.16 E-value=0.41 Score=43.80 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 517 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l 517 (588)
.+.+.++++.++.|++.++.++..-.++.+...++.+++..+++......+..+|....-.+
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999888888888766544
No 269
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=95.05 E-value=0.98 Score=45.62 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
+++.+++..+.-|+--+......+--+.++.+++.|..+|+...+.-.+|..+.+++.-.++
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 44444444444455444455555666778888889999999998888888888777765554
No 270
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.88 E-value=0.22 Score=53.80 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccC--
Q 007827 410 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-- 487 (588)
Q Consensus 410 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-- 487 (588)
++..+.++.++..++...++.... ...+.......+++..+|..+.....-+++.|..
T Consensus 58 r~~Y~~i~~~~~~~~~~~~~~~~~--------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~ 117 (433)
T PF03092_consen 58 RKPYMIIGWLLGAVSALVLALLPA--------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARR 117 (433)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc--------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence 336677777777666555554321 1123334455566777888888888777777775
Q ss_pred -CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 007827 488 -PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 563 (588)
Q Consensus 488 -P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~ 563 (588)
|.+ ||..++.......+|+.++..+.|.+.+.. +++..|.+.+.+.++..+..++...|
T Consensus 118 ~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 118 EPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred CCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 555 888899999999999999999998876543 33456677776766666666666655
No 271
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=93.38 E-value=1 Score=48.56 Aligned_cols=83 Identities=10% Similarity=-0.055 Sum_probs=44.1
Q ss_pred hhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 482 FYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 482 ~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
+......++.++-+.-....+..+|-+++..+.-.+.+..=-...-...|.+.---....+..+.+.+.++..+.+.++.
T Consensus 142 WALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k 221 (544)
T PF13000_consen 142 WALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFK 221 (544)
T ss_pred hhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEe
Confidence 33345556667777777777777777777766665543200000001122221112344455566666666666666666
Q ss_pred ccc
Q 007827 562 KWY 564 (588)
Q Consensus 562 ~~~ 564 (588)
+|.
T Consensus 222 ~E~ 224 (544)
T PF13000_consen 222 KEK 224 (544)
T ss_pred ecc
Confidence 654
No 272
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=92.64 E-value=0.39 Score=51.07 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=78.6
Q ss_pred hhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 007827 377 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 456 (588)
Q Consensus 377 ~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (588)
...++.-++..|+.+....+.-.|+|||+ .-+..+..+.+++++++++..+.......+.. ..+...
T Consensus 74 ~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~-------~~~~~r 140 (498)
T KOG0637|consen 74 LCGPLSGLLVQPLVGSASDRCTSRYGRRR------PFILAGSLLIAVSLFLIGYAADIGLLLGDNER-------KPVKPR 140 (498)
T ss_pred cccccccceeccccccccccccccccccc------chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc-------cccchH
Confidence 34466666777777776444455555553 45666777788888888876543333221111 112223
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSI-GGSLAFVGFAISNYLNGFLISM 516 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~-~~~~~~~~~~ig~~l~~~~~~~ 516 (588)
.....++.+-+.=+..-....+.=++..+.+-+..+-+ +.+.+....++||.+|-.+.++
T Consensus 141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 141 AIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 33444555555555655666777788888876555555 9999988889999888776653
No 273
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=92.08 E-value=3 Score=44.89 Aligned_cols=137 Identities=9% Similarity=0.045 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
+....+..|++.. |+|+...|.+-+...+....+..+..++.+| +|..|+-++++..-.+...++..+...|.
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~----- 348 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPG----- 348 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 4456788898766 9999999999999999999999999999999 69999988888876666555554433221
Q ss_pred CCCCCCCCCCCC-CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGP-TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
.+ +..+...++.+..+-=+|.-++--+..-++.|..|+ ..|+...+......++--.+...++
T Consensus 349 ----------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~------~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 349 ----------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE------SERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH------HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01 223455555555555567666666677777787753 2234567777777777777665554
Q ss_pred H
Q 007827 201 V 201 (588)
Q Consensus 201 ~ 201 (588)
-
T Consensus 413 i 413 (432)
T PF06963_consen 413 I 413 (432)
T ss_pred h
Confidence 3
No 274
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=91.65 E-value=14 Score=40.44 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=68.4
Q ss_pred CchhhhHHHHHHHH-HHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh--ccccCCC-CCCCCCCCCCCCCC
Q 007827 58 KSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA--AISKLHP-PDCGNQDSGACPGP 133 (588)
Q Consensus 58 s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 133 (588)
++.....+-....+ +..+...+-.+++|+ ++|.+++.+....+.....+.++.- .-..+|+ +.|+..+...-++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~ 134 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGF 134 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchH
Confidence 33444444443333 445667778999999 6999988877666655544444321 1111121 11111111100000
Q ss_pred Cc-------hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 134 TP-------WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 134 ~~-------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
.. ++...+++.-=+.| .-...-.-..+..|.++. ++. .+.++.+..+.|+|..++..+..++.+
T Consensus 135 ~~~i~~~~~Wt~slfYv~aElwg--svvlSlLFW~fAN~itt~--~eA----KRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 135 KGFIAMFRNWTFSLFYVMAELWG--SVVLSLLFWGFANEITTV--EEA----KRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111111111111 111111235555666643 112 257999999999999999888887776
No 275
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.55 E-value=7.2 Score=42.19 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=59.8
Q ss_pred HHHHHHhhhhhhhhh---hccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 007827 70 SGTTNFATLLGAFLS---DTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLG 146 (588)
Q Consensus 70 ~~~~~~~~~~~G~ls---Dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (588)
.++..++..+.+.++ ++ +||++++.++.++..++.++..+.. |.-. | -+||-..+-....+....++.-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~da-p---~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDA-P---LRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccC-C---CCCCcccccccccchhHHHHHHH
Confidence 334444445555554 66 6899999988888777766655542 1100 0 11233333333345666777788
Q ss_pred HHHhhcccccccchhhccccCCC
Q 007827 147 LMVIGAGGIRPCNLAFGADQFNP 169 (588)
Q Consensus 147 l~g~~~g~~~~~~~~~~~~~~~~ 169 (588)
++|++-++..+..+.++++.+|+
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~~ 384 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYPD 384 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999953
No 276
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=87.26 E-value=29 Score=37.01 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
.+..++-+.-++.|++... -.+-++|++..+|++.--++++....+.-+|..++..++..+...
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666777766544 556678999999999999999999888889999999888877653
No 277
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=86.67 E-value=53 Score=35.85 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHh-hhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 464 QLSLIGFSEAFTI-IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 464 ~~~l~~~~~~~~~-~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
-++...+...... -.-|.+..|.+..+...+..++.....++|..+++.+...+..
T Consensus 134 FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 134 FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333 3678999999999999999999999999999999998887764
No 278
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=84.78 E-value=58 Score=34.60 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL 513 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~ 513 (588)
+-+|.+....++|++.+-.......+..+.+|++.+..+..+....-..|-..|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 446777788888999888888888999999999988887777666555555555543
No 279
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=84.68 E-value=11 Score=38.56 Aligned_cols=103 Identities=13% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
..++..+..|.-..++......++| +.+ ...........+++.+.+..+ +|-|+++.++...+.. ..+
T Consensus 36 ~~fl~~f~a~~gl~nlq~~vn~~lg----~~s--l~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~l-----yiA 103 (390)
T KOG3097|consen 36 IAFLLTFTAYLGLQNLQTSVNYDLG----TVS--LGALYLSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYAL-----YIA 103 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc----cch--hhhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH-----HHH
Confidence 3344444444445555555543333 221 122334444556666688888 7999998776544432 222
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhcccc
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQ 166 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~ 166 (588)
.... ..+..++..-...|++.+..+....+|++++
T Consensus 104 ~Nl~--------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~ 138 (390)
T KOG3097|consen 104 ANLE--------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPM 138 (390)
T ss_pred hhcc--------------------hhHHhhccHHHhhccccccccccCcceecHH
Confidence 2111 3456677888888999999988777777654
No 280
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=83.10 E-value=5.7 Score=41.60 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 539 LDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 539 ~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
...+.++.+.+..++..+..++.+|....
T Consensus 214 L~gy~~fwg~~~~vat~Lv~~~kke~~~~ 242 (510)
T KOG3574|consen 214 LAGYLWFWGALFIVATTLVALLKKENDES 242 (510)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 45567777778888877777776555444
No 281
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=82.43 E-value=18 Score=35.18 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhccCCc-chHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 007827 458 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-NMRSIGGSLAFV-GFAISNYLNGFLISMVHR 519 (588)
Q Consensus 458 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~-~~rg~~~~~~~~-~~~ig~~l~~~~~~~l~~ 519 (588)
.+.++......+++.+...+....++.+..|+ +.|+...+.... ...++..+++.+.+.+..
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555557888888888999999999998 678888888877 577777888766665554
No 282
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=76.56 E-value=1.2e+02 Score=33.17 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 459 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 459 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
..++...++..+..-..+....++-++++.|..-|++|-+-|+.+++|+--...+.-.+.|.
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 34455677777777778888899999999999999999999999888887777666655554
No 283
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=75.24 E-value=1.3e+02 Score=32.60 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLIS 515 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~ 515 (588)
+-++.++.++++|+..+........+..+.++++.|..+..+....-.+|-..|..+.-
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667889999999998888889999999999999999888888888888776653
No 284
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=72.86 E-value=1.5e+02 Score=32.39 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=89.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCC---chhhhHHHHHHHH-HHHHhhhhhhhhhhccccchhHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMK---SITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLGFAS 98 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s---~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~l~~~~ 98 (588)
++....+.++.++-.+.+ .+.--+++.+.++ +.....+-+...+ +..+..++-+++.++ +-|.+++.+.+
T Consensus 26 ~~kflpl~Ll~f~I~~ny-----~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~ 99 (509)
T COG3202 26 LKKFLPLALLFFCILFNY-----NLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIIL 99 (509)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHH
Confidence 444555555545544432 2233345555554 4444555555555 667888889999999 69999988877
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCC-------CCCCCCCCc----------hhHHHHHHHHHHHHhhcccccccchh
Q 007827 99 VASFLGMLVLSLTAAISKLHPPDCGNQD-------SGACPGPTP----------WQLAFLFTGLGLMVIGAGGIRPCNLA 161 (588)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----------~~~~~~~~~~~l~g~~~g~~~~~~~~ 161 (588)
..+....+++++... |.||-=| ....+.|.. ++...+++.-=+.|-- ...-.-..
T Consensus 100 ~~F~~fF~LFa~Vi~------P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgsl--V~S~lFw~ 171 (509)
T COG3202 100 GFFLGFFALFAFVIY------PYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSL--VLSLLFWQ 171 (509)
T ss_pred HHHHHHHHHHHHHHh------ccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 777766666666532 2221111 112223321 2333333332222210 00001233
Q ss_pred hccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 007827 162 FGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~ 206 (588)
...|+... ++. .+.++.++.+.|++..++..+..++.++
T Consensus 172 faNeitt~--~ea----kRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 172 FANEITTI--EEA----KRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHhhhH--HHh----hhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555532 111 2479999999999999988888887653
No 285
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=72.10 E-value=31 Score=34.20 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007827 489 ENMRSIGGSLAFVGFAISNYLNGFLISMV 517 (588)
Q Consensus 489 ~~~rg~~~~~~~~~~~ig~~l~~~~~~~l 517 (588)
+-+|..++|+.....+..+.+.++..+-+
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 44677888888887877777777776543
No 286
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=69.52 E-value=1.3e+02 Score=30.11 Aligned_cols=47 Identities=17% Similarity=0.464 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHHHHhccceeec
Q 007827 188 TFTFAMMISLTVIVYVQS-------DVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 236 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
+.++|+.+.-+. ++.. .-.|++.+.+.+++.++-++++.+..++.+.
T Consensus 14 gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~ 67 (267)
T PF07672_consen 14 GFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDI 67 (267)
T ss_pred cchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 566777765332 2221 1349999888888877777777766666543
No 287
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=69.25 E-value=35 Score=36.35 Aligned_cols=107 Identities=9% Similarity=0.025 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcch
Q 007827 412 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 491 (588)
Q Consensus 412 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~ 491 (588)
.+..+..++.++++++.+.. .+.+.-+++.++.+++.++.-.....+. ..+|+.
T Consensus 90 ~Ri~~~~~l~~~g~l~va~~------------------------~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~~- 143 (402)
T PF02487_consen 90 IRILICVALSAAGMLLVAFS------------------------PSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGKS- 143 (402)
T ss_pred HHHHHHHHHHHHHHhheeec------------------------cchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCcc-
Confidence 45666667777887777653 2444556666777777666666655554 344542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 492 RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 492 rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
..+-+..+.+.++.+|+..--.+.. . ++ +.+....+...+.++..+.+++..+
T Consensus 144 ---~l~~wssGTG~aGl~Ga~~y~~lT~-~------g~--------s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 144 ---SLSAWSSGTGGAGLVGALYYLGLTT-L------GL--------SPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred ---ccccccCCcChhhHHHHHHHHHHHH-h------Cc--------CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444554555555666554433332 1 22 3445555555555555444444443
No 288
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=62.47 E-value=2.5e+02 Score=30.94 Aligned_cols=42 Identities=17% Similarity=-0.058 Sum_probs=37.7
Q ss_pred hhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 478 AEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 478 ~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
.-|.+.-|.++.+...+..++.....++|.++++.+...+..
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999998887765
No 289
>PRK03612 spermidine synthase; Provisional
Probab=60.46 E-value=1.9e+02 Score=32.01 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=28.2
Q ss_pred HHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 466 SLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 466 ~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
++.++..+...|....+..+...+ .-|...|-.+..+.+|+++|+.+.+.+.
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~~~-~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIRDQ-HLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc-chhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 344555566666655544433221 1234445555566677777777766554
No 290
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=59.62 E-value=39 Score=36.48 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 137 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 137 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
+.+..++..+++|+..|-..+..+.+..+..++ .+++ .+-.+..++..+|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~---~e~e---~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDP---HERE---VAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH---HHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345566678889999999888888888887652 2222 23334444555666655443
No 291
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=58.57 E-value=1.1e+02 Score=30.38 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH
Q 007827 137 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF 187 (588)
Q Consensus 137 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (588)
....+++.-++.|++.=+..+.... +...+++.+| +..+..+++..-
T Consensus 203 ~~~~f~I~~Fl~G~f~WgiQ~ViL~-lPhEyK~~~p---k~ig~~Fg~iWG 249 (267)
T PF07672_consen 203 GFAFFYIFGFLAGFFLWGIQGVILN-LPHEYKGYNP---KKIGIQFGLIWG 249 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhc-ChhhhcCCCc---ceehhHHHHHHH
Confidence 5667788888888877666664333 3444554333 333455555333
No 292
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=57.30 E-value=69 Score=32.20 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhccccch--hHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHH
Q 007827 62 ATTLINIFSGTTNFATLLGAFLSDTYFGRY--KTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 139 (588)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (588)
-|.+...+.++..++.-+...+..|. ..| ..+.+..+...+...+..++.+ -.|+..++.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~-----------------vsP~kes~~ 345 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSS-----------------VSPSKESPS 345 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhc-----------------cCCCcCCch
Confidence 46778888888878777777776662 222 2333333333333333333211 012224555
Q ss_pred HHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Q 007827 140 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM 219 (588)
Q Consensus 140 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~ 219 (588)
.-+++..+.-.+.|.++|..+-+=.+..|+ ..++..++++.+-.|+-..++...--.-....+-|..|.++.+.
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPE------earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPE------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCH------HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence 567788888899999999887776666653 22345678777766654443311100000112456777776665
Q ss_pred HHHHHH
Q 007827 220 MFLSCA 225 (588)
Q Consensus 220 ~~~~~~ 225 (588)
..++.+
T Consensus 420 ~~~a~i 425 (454)
T KOG4332|consen 420 LFVASI 425 (454)
T ss_pred HHHHHH
Confidence 555543
No 293
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.84 E-value=32 Score=29.00 Aligned_cols=34 Identities=9% Similarity=-0.188 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 67 NIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 67 ~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
+.=.+.+.+.....||+-|||+|-++..++..++
T Consensus 49 ssefIsGilVGa~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 49 SSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3344555556666789999999988755444333
No 294
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.50 E-value=1.3e+02 Score=25.59 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=31.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 007827 488 PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAS 525 (588)
Q Consensus 488 P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~ 525 (588)
-++.++.++++-...-.+++++-+...|++.|...+++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTs 73 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTS 73 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35678888888888889999999999999998765444
No 295
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=50.55 E-value=3.4e+02 Score=28.88 Aligned_cols=76 Identities=9% Similarity=-0.020 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
.+++-...+..+.+--++-.-...|+.+-.|-|......--.+-.....+..++-|--.|+ .-|+|++...+++--
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg-~sr~Kvi~~~L~lqN 104 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDG-MSRVKVIQTWLLLQN 104 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcc-hhHHHHHHHHHhhcc
Confidence 3444444455555544444445566665556454444444444455566777777888899 799999888776533
No 296
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=48.38 E-value=27 Score=34.72 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=43.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhh---------hhccccchhHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFL---------SDTYFGRYKTL 94 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l---------sDr~~Grr~~l 94 (588)
+.+-.+--.+.+++..|+++ .|.++.....+..+..+.-++..++-|.. .|| +|||+..
T Consensus 27 mlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~w 94 (412)
T KOG4830|consen 27 MLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMSW 94 (412)
T ss_pred HHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceeee
Confidence 33444444455778889874 57888887788888889999999988744 688 7999865
No 297
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=46.72 E-value=1.4e+02 Score=33.55 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=69.6
Q ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCc----chHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 007827 454 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE----NMRS--IGGSLAFVGFAISNYLNGFLISMVHRFTKGASTG 527 (588)
Q Consensus 454 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~----~~rg--~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~ 527 (588)
.......+..++-+.++|.+..-+...++-++++++ +.+. ..+..+....++|..++..+..++.+..
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~------ 221 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV------ 221 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc------
Confidence 334445666677788889999999999999999982 2222 4566678888888888888887776543
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 007827 528 DWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 568 (588)
Q Consensus 528 ~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~ 568 (588)
+| ..-|.+..+..+++.++++...+.++.++
T Consensus 222 ~w----------~lgf~i~~~~~~lai~iF~~g~~~y~~~~ 252 (571)
T KOG1237|consen 222 GW----------KLGFGIPTVLNALAILIFLPGFPFYRYKK 252 (571)
T ss_pred cc----------eeeccHHHHHHHHHHHHHHcCceeEEeeC
Confidence 34 24566777777777777777666665443
No 298
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=43.09 E-value=3.3e+02 Score=28.70 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCCCCCCCCC
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG--ASTGDWLPED 533 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~--~~~~~~~~~~ 533 (588)
-++|+..+.+++......+..+....-+++--..+.-|...|++++ ++-++=+.+.-++.|..|. +-++++
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTF---vAl~lQsilT~iVvd~~g~~L~ir~Q~---- 396 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTF---VALILQSILTLIVVDDRGLGLDIRTQF---- 396 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHH---HHHHHHHhheEEEEcccccCCCcceeE----
Confidence 4577788888888888888777776666666667777777888765 3333434333334443221 111111
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhh
Q 007827 534 LNKGRLDYFYYLVAALGLLNFGFFLLC 560 (588)
Q Consensus 534 ~~~~~~~~~f~~~~~i~~~~~~~~~~~ 560 (588)
--+...|.+++++.++.....+..
T Consensus 397 ---~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 397 ---VVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred ---EEEeehHHHHHHHHHHHHHHHHHH
Confidence 123446788888888776554433
No 299
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=42.63 E-value=51 Score=35.05 Aligned_cols=114 Identities=13% Similarity=0.027 Sum_probs=65.4
Q ss_pred HHHhhhhhhhHHHHHHHhcCCC---chhhhHHHHH-HHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 37 KLGTTGTSSNLLVYLTTIFNMK---SITATTLINI-FSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 37 ~~~~~~~~~~l~~yl~~~~g~s---~~~~~~~~~~-~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
.+.|....+..|.+..+..+-. ..-.-..... +++.-.+|.+...++-++ +||+..+ ..++-.+...+..+..
T Consensus 256 ~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i-~v~lR~lfiPlF~~cn 332 (406)
T KOG1479|consen 256 FLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTI-PVLLRLLFIPLFLLCN 332 (406)
T ss_pred heeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehH-HHHHHHHHHHHHHHhc
Confidence 3444455567787776543222 2223334444 677777777777777665 5565544 3344333333333222
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCC
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFN 168 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~ 168 (588)
..| . .....+.++++....++|+..|=...+.+.+..+..+
T Consensus 333 ~~~--~-------------~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~ 373 (406)
T KOG1479|consen 333 YPP--L-------------PVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVK 373 (406)
T ss_pred cCC--C-------------CceecCchHHHHHHHHHHhccchHhhheehhcCCCCC
Confidence 111 0 0011344667778888999999988888888888876
No 300
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=33.72 E-value=1.3e+02 Score=21.74 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 69 FSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 69 ~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
......+.....|+..|+++|.++...+.
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~~ 37 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTLI 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 34445566677788888888986654443
No 301
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=33.22 E-value=1.5e+02 Score=34.18 Aligned_cols=47 Identities=19% Similarity=0.063 Sum_probs=31.2
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhccc
Q 007827 85 DTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGG 154 (588)
Q Consensus 85 Dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~ 154 (588)
|++-||.|-++++.++++++++...+.. ...+.+..+..+.+++.+.
T Consensus 51 ~~~~~R~~~l~it~~~f~i~sl~v~ll~-----------------------~~p~~~~~~l~~~tf~~~m 97 (701)
T TIGR01667 51 DRLTGRLKNLIITLSCFSIASFLVQLLF-----------------------PKPWLFPFLLTLLTFGFIL 97 (701)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cchHHHHHHHHHHHHHHHH
Confidence 3434667888888888888887776653 2445566666666665554
No 302
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.47 E-value=1.5e+02 Score=36.26 Aligned_cols=17 Identities=12% Similarity=-0.255 Sum_probs=7.2
Q ss_pred HHHHHHhhhhhhhhhhc
Q 007827 70 SGTTNFATLLGAFLSDT 86 (588)
Q Consensus 70 ~~~~~~~~~~~G~lsDr 86 (588)
+.++.+|+.+...+..-
T Consensus 62 Nl~GiVGA~LAD~L~~L 78 (1355)
T PRK10263 62 NLGGMPGAWLADTLFFI 78 (1355)
T ss_pred cccchHHHHHHHHHHHH
Confidence 34444444444444333
No 303
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=28.92 E-value=1.2e+02 Score=24.01 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (588)
++.....++++++ .+.|++.++ .+..+++.++..++++++..--.|-+.+++.+
T Consensus 12 l~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~ 65 (76)
T PF06645_consen 12 LMQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLK 65 (76)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhcCCccc
No 304
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.08 E-value=82 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 539 LDYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 539 ~~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
....++++.+++.+.++.+++...+.+
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445667777777666665555444443
No 305
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=24.65 E-value=3.9e+02 Score=30.86 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=30.6
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhccc
Q 007827 85 DTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGG 154 (588)
Q Consensus 85 Dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~ 154 (588)
|++-||.|-++++.++++++++...+.. ..++.+..+..+.+++.++
T Consensus 51 ~~~~~R~~~l~~t~~~f~i~sl~v~ll~-----------------------~~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 51 DRLTGRLKNVIFTLICFSIASFSVELLF-----------------------GKPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cCcHHHHHHHHHHHHHHHH
Confidence 3444677888888888888777766653 2445666666666665554
No 306
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=24.56 E-value=4.1e+02 Score=28.01 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHH
Q 007827 63 TTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142 (588)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (588)
|..=.+..+.++++.+..|++.-. +.|..-++++......+.++...+.+ .+.+..+
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~-w~r~g~~ll~~~s~~~agllf~m~~t----------------------~~Iw~~Y 330 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNIN-WNRWGDLLLAVGSAVQAGLLFIMAQT----------------------QHIWVCY 330 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeec-cchhhHHHHHHHHHHhhhhhhhhhcc----------------------cceehhh
Confidence 455566778888999999999777 46664444443333333333333322 4577788
Q ss_pred HHHHHHHhhcccccccchhhccccC
Q 007827 143 TGLGLMVIGAGGIRPCNLAFGADQF 167 (588)
Q Consensus 143 ~~~~l~g~~~g~~~~~~~~~~~~~~ 167 (588)
++..+.........+.+..-++...
T Consensus 331 a~yvlfr~~y~l~itiA~~~iA~nL 355 (433)
T KOG3810|consen 331 AGYVLFRVIYQLTITIATFQIARNL 355 (433)
T ss_pred hhHHHHHhhHhhhhhHHHHHHHHhh
Confidence 8888888778777777766666655
No 307
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=22.53 E-value=8.8e+02 Score=25.15 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 007827 539 LDYFYYLVAALGLLNFGF 556 (588)
Q Consensus 539 ~~~~f~~~~~i~~~~~~~ 556 (588)
..+.|.+..++.+++.++
T Consensus 285 ~~~ly~~af~lIiiG~vv 302 (334)
T PF06027_consen 285 FSWLYILAFALIIIGFVV 302 (334)
T ss_pred ccHHHHHHHHHHHHHhhe
Confidence 345655444444444433
No 308
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.32 E-value=1.5e+02 Score=24.36 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeec
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 236 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
-++.....+|+.+| .+.|+..+.++|.. ++.++.+++.+++.+--.|.+++
T Consensus 26 r~~q~ilti~aiVg-~i~Gf~~Qqls~tv--y~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 26 RFQQLILTIGAIVG-FIYGFAQQQLSVTV--YIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCchhhhc
Confidence 34556777888877 44566666666643 33444444555544433444433
No 309
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=22.03 E-value=1.2e+03 Score=26.57 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=33.5
Q ss_pred hhcccccccchhhccccCCCCCCCCccchhhhhhH-HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 150 IGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+|.||..|..++ +.... .++.|.++....- ...+..+... ...++.+..+. +-.+.|.+.....+++++..+
T Consensus 388 lGFGCnVPaIma--TRtle---~~reRllt~lv~pfmsCsARLpVy-~l~~~affp~~-~~~v~f~lY~lgi~~all~a~ 460 (653)
T COG0370 388 LGFGCNVPAIMA--TRTLE---TERERLLTILVIPFMSCSARLPVY-VLFAAAFFPSN-GGLVLFSLYLLGIVVALLTAK 460 (653)
T ss_pred hccCCchHHHHH--HHHhc---chhHHHHHHHHhhccchhhhHHHH-HHHHHHHcccc-cchHHHHHHHHHHHHHHHHHH
Confidence 577787776655 34443 3333333333322 2212222222 22333444443 333455555555555555544
Q ss_pred hccce
Q 007827 229 LGSRL 233 (588)
Q Consensus 229 ~~~~~ 233 (588)
+.++.
T Consensus 461 vl~k~ 465 (653)
T COG0370 461 VLKKT 465 (653)
T ss_pred HHHHh
Confidence 44433
No 310
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=21.02 E-value=2.6e+02 Score=22.66 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=35.2
Q ss_pred HhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Q 007827 149 VIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMM 220 (588)
Q Consensus 149 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~ 220 (588)
|+|.=.+.|..+.++.|.-- .. .--++....+.+|..+|.+....+......+..+....+..
T Consensus 5 GigRFayTplLP~M~~~~~l---s~------~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~ 67 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGL---SL------SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLT 67 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCC---CH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444445555555554321 11 22556667778888888888877766545444444444433
No 311
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.63 E-value=1e+02 Score=26.90 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q 007827 542 FYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 542 ~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
+|.+++++.++.+++.+++.|+.|
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444544444444444443333
Done!