Query 007827
Match_columns 588
No_of_seqs 167 out of 2159
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 11:29:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 7.2E-30 2.5E-34 277.0 27.8 446 20-567 9-478 (491)
2 2xut_A Proton/peptide symporte 100.0 7.2E-30 2.5E-34 279.5 23.9 489 21-570 9-512 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 4.2E-26 1.4E-30 244.0 26.8 396 23-562 27-435 (451)
4 4gc0_A D-xylose-proton symport 99.9 6.8E-26 2.3E-30 245.6 21.3 422 58-583 53-485 (491)
5 3o7q_A L-fucose-proton symport 99.9 2E-24 7E-29 230.1 29.1 178 22-228 24-227 (438)
6 2gfp_A EMRD, multidrug resista 99.9 3.5E-22 1.2E-26 208.7 16.9 164 29-224 5-168 (375)
7 2cfq_A Lactose permease; trans 99.9 2.7E-22 9.4E-27 213.4 12.7 395 25-569 8-408 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 5.7E-12 1.9E-16 134.0 12.0 177 24-229 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.2 5.8E-11 2E-15 125.7 14.7 167 24-224 258-426 (438)
10 2cfq_A Lactose permease; trans 99.1 2.5E-10 8.7E-15 120.8 10.6 165 37-232 233-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 1.8E-09 6.1E-14 116.3 15.0 185 26-233 285-474 (491)
12 4gc0_A D-xylose-proton symport 98.8 9.6E-08 3.3E-12 102.5 17.5 177 32-234 284-466 (491)
13 2gfp_A EMRD, multidrug resista 98.6 5.7E-09 1.9E-13 108.1 1.2 162 26-217 201-363 (375)
14 2xut_A Proton/peptide symporte 98.4 1.9E-06 6.6E-11 93.2 12.6 138 374-561 58-199 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=7.2e-30 Score=277.03 Aligned_cols=446 Identities=16% Similarity=0.257 Sum_probs=291.1
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHh-----cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhc-cccchhH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI-----FNMKSITATTLINIFSGTTNFATLLGAFLSDT-YFGRYKT 93 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr-~~Grr~~ 93 (588)
++++|..+.+....++..+++|++..+++.|+++. +|+|..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34556777888888999999999999999999988 99999999999999999999999999999999 5 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+..+.++..++.+++.++ .+.+.++++|+++|++.+...++..++++|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---- 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE---- 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----
T ss_pred HHHHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc----
Confidence 999999999888887765 3466789999999999999999999999999964
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccC---CCC-ChhhhHHH
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVK---PEG-SPLASTVQ 249 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 249 (588)
+++.++.++++++...++|..++|.+++++.+..||++.|++.++..++++++..+..+++.+++ +++ .+.++..+
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 23345677888999999999999999999999899999999987776666665554433322111 111 11111111
Q ss_pred HHHH-------------HHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCcccc
Q 007827 250 VFVA-------------AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRL 316 (588)
Q Consensus 250 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (588)
.... .....+ ..+.. +.........+....... ...|+.
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~------~~~~~~ 271 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVG--WNSLP--------------------AYINLLTIVAIAIPVFYF------AWMISS 271 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHS--SCCTT--------------------HHHHHHHHHHHHHHHHHH------HHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--Ccccc--------------------cchhhhhHHHHHHHHHHH------HHHhhc
Confidence 1000 000000 00000 000000000000000000 000000
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccc-cccccCCccccccchhhhhhhhHHHHHHHhhhhhhhh
Q 007827 317 SSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ-SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIV 395 (588)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 395 (588)
.. ....++++......+++....++..+.+....+..+... ...+. .........+.+..++..++.+++
T Consensus 272 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l-- 342 (491)
T 4aps_A 272 VK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW------FPVSWFQSLNPLFIMLYTPFFAWL-- 342 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS------SCSGGGTTHHHHHHHHHHHHHHHH--
T ss_pred cc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc------cCHHHHhccchHHHHHHHHHHHHH--
Confidence 00 001123333334444555555666666555543322211 11111 234455666677777777776554
Q ss_pred HhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhH
Q 007827 396 PRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 475 (588)
Q Consensus 396 ~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 475 (588)
.||++||+ ......+..+.++.++++++........ + .....+.++.+..+++.+++.+..
T Consensus 343 --~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 343 --WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G--------TSGKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp --HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-------C--------CCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred --HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C--------CCCCccHHHHHHHHHHHHHHHHHH
Confidence 88888774 4455667788888888877666542110 0 012246667778888999999999
Q ss_pred hhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 007827 476 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFG 555 (588)
Q Consensus 476 ~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~ 555 (588)
.+..+.++.|.+|++.||+++|+.++...+|..+++.+.+.+.+. ++.+.|.+.+++.++..+
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877542 234678888888888877
Q ss_pred HHHhhhcccccc
Q 007827 556 FFLLCAKWYKYK 567 (588)
Q Consensus 556 ~~~~~~~~~~~~ 567 (588)
+.+++.++.+++
T Consensus 467 ~~~~~~~~~~~~ 478 (491)
T 4aps_A 467 VLVFLSKRIQGL 478 (491)
T ss_dssp HHHHC-------
T ss_pred HHHHHHHHHHHH
Confidence 777776665544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.2e-30 Score=279.51 Aligned_cols=489 Identities=21% Similarity=0.323 Sum_probs=282.4
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcC------CCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-cchhH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFN------MKSITATTLINIFSGTTNFATLLGAFLSDTYF-GRYKT 93 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grr~~ 93 (588)
+++|..+.+.+..++..+++|++..+++.|+++++| +|..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 345666777888899999999999999999999999 999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+.++.++.+++.+++.++. .+.+.++++|++.|++.+...++..+++.|.+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--- 141 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS--- 141 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT---
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc---
Confidence 9999999988888877752 15678899999999999999999999999999743
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHH
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVA 253 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (588)
++......+++++.+.++|.+++|.+++++.+..||++.|++.++..++++++.++..++..++++++++..+..+.+..
T Consensus 142 ~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 142 NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 22223456777889999999999999999998899999999888776666665555444433222222111111111111
Q ss_pred HHHhhccCCCCCCccccccCC-CcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccc-------cchhhHHHHH
Q 007827 254 AIKKRHLKLPEEPWLTLHNHI-PKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWR-------LSSMQKVEEV 325 (588)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 325 (588)
..++++... +........ ............+................+. ....+|+ .+.....+++
T Consensus 222 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 295 (524)
T 2xut_A 222 ALLTKVEGK---GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF---VGAGASLQLERARKSHPDAAVDGV 295 (524)
T ss_dssp -----CTTH---HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH---HHTGGGTHHHHSCCSCCSSSSTTT
T ss_pred HHhhhhccc---Cccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc---cccchhhHHhhhhccccHhHHHHH
Confidence 111110000 000000000 0000000000000000000000000000000 0001110 0000011123
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCC
Q 007827 326 KVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 405 (588)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~ 405 (588)
++......+++....++..+.+....+..+....+... + .+...+...+.++.++..++.+++..+..+|.++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 369 (524)
T 2xut_A 296 RSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK- 369 (524)
T ss_dssp TTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S-SCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC-
Confidence 33333344444444455555554443333322221110 0 13455666777788888888888765665665443
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhc
Q 007827 406 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYK 485 (588)
Q Consensus 406 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 485 (588)
.+..+.+.+|+++.++++++....... .+.....+.+++++.+++.+++++...+..++++.|
T Consensus 370 --~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 432 (524)
T 2xut_A 370 --LTALRKMGAGIAITGLSWIVVGTIQLM---------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYS 432 (524)
T ss_dssp ---CCHHHHHTHHHHHHHHHHTTTTTTTT---------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777776655442100 000112455677778899999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 486 QFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 486 ~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
.+|++.||+++|++++..++|+.+++.+.+.+.+..+ .+|.+.+ +.+.....|++.+++.+++.++++++.++++
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQT-GMSVTAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccc-cccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998865321 0121100 0001122377788888888777777777666
Q ss_pred ccCCC
Q 007827 566 YKGSG 570 (588)
Q Consensus 566 ~~~~~ 570 (588)
++..+
T Consensus 508 ~~~~~ 512 (524)
T 2xut_A 508 MQDHY 512 (524)
T ss_dssp -----
T ss_pred cchhh
Confidence 55443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=4.2e-26 Score=243.95 Aligned_cols=396 Identities=12% Similarity=-0.015 Sum_probs=247.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
++....+.+..+...+..+.+...++.+. +++ .+..+.+++.+++.++..+++++.|+++|| +|||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 34444555555666666666666666554 567 999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHH----hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccch
Q 007827 103 LGMLVLSL----TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGI 178 (588)
Q Consensus 103 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (588)
++.+++++ + .+++.++++|+++|++.+...++..+++.|.+|+ +.+
T Consensus 104 ~~~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KER 153 (451)
T ss_dssp HHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THH
T ss_pred HHHHHHHhhhhcc------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhh
Confidence 99988887 5 3466789999999999999999999999999963 223
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHh
Q 007827 179 TSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKK 257 (588)
Q Consensus 179 ~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (588)
+..+++.+.+.++|.+++|.+++++.+..| ||+.|++.++..++..++.++..++.++.....+. +
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 220 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------ 220 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------
Confidence 567888999999999999999999888888 99999998877666555444433332111100000 0
Q ss_pred hccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHH
Q 007827 258 RHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWA 336 (588)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 336 (588)
+ . +.+.+.+...+. .....++..........+.+... +...+
T Consensus 221 ------~-~-----~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (451)
T 1pw4_A 221 ------E-Y-----KNDYPDDYNEKA-------------------------EQELTAKQIFMQYVLPNKLLWYIAIANVF 263 (451)
T ss_dssp ------T-T-----CCC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ------h-h-----cccccccchhhh-------------------------hcccccccchHHHHHcCHHHHHHHHHHHH
Confidence 0 0 000000000000 00000000000000001111111 11111
Q ss_pred HHHHHHHHHhcccceeeeeccccccccCCccccccc---hhhhhhhhHHHHHHHhhhhhhhhHhhhhh--ccCCCCCChH
Q 007827 337 SAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPA---ASYAIFSMLGLTIWIPIYDRIIVPRLQRL--TKKEGGITIL 411 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~~~~~~~l~~~~~~~~~~~~--~~k~~~~~~~ 411 (588)
....+.......+.+ .....| .+. ........++.+++..+..+ +.||+ ++|
T Consensus 264 ~~~~~~~~~~~~~~~-------~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~~~~------- 320 (451)
T 1pw4_A 264 VYLLRYGILDWSPTY-------LKEVKH-----FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFRGNR------- 320 (451)
T ss_dssp HHHHHHHHHHHHHHH-------BTTBSC-----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSTTCH-------
T ss_pred HHHHHHHHHHHHHHH-------HHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCc-------
Confidence 111122222211111 122222 122 22333334444445454433 47776 443
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcc
Q 007827 412 QRMAIGMILAI-FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 490 (588)
Q Consensus 412 ~~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~ 490 (588)
+.+.++.++.. +++++.... ...+.+......++.+++.....+....++.|.+|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 321 GATGVFFMTLVTIATIVYWMN----------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC----------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHh----------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh
Confidence 34444444433 444433321 1124455666677778877778888889999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 491 MRSIGGSLAFVGFAI-SNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 491 ~rg~~~~~~~~~~~i-g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
.|++++|+.+....+ |..+++.+.+.+.+.. ++...|++.+++.+++.+..+...+
T Consensus 379 ~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 379 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999988753 3457788888888777766665544
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=6.8e-26 Score=245.57 Aligned_cols=422 Identities=13% Similarity=0.066 Sum_probs=225.4
Q ss_pred CchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchh
Q 007827 58 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 137 (588)
Q Consensus 58 s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (588)
+..+.+++.+.+.++..++++++|+++|| +|||++++++.+++.++.++++++.......... ..-.-....+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~------~~~~~~~a~~ 125 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPD------NTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS------SSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch------hHHHHHHhhh
Confidence 34567889999999999999999999999 6999999999999999998887532100000000 0000000146
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc--------cch
Q 007827 138 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------VSW 209 (588)
Q Consensus 138 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~--------~g~ 209 (588)
++.++++|+++|++.|+..+..+.+++|..|+ +.|+...+..+.+..+|..+++.++..+... .+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 88899999999999999999999999999863 2234566777778888888887777655432 346
Q ss_pred hhHHHHHHHHHHHHHHHHHhc--cceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCC
Q 007827 210 AWGLGIPAFMMFLSCAMFFLG--SRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG 287 (588)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (588)
++.+.+..+..++.++..+.. .|++...+.+.++.. +.+.+...+...... ..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~---~~l~~~~~~~~~~~~------~~---------------- 254 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAE---GILRKIMGNTLATQA------VQ---------------- 254 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHH---HHHHHHHHHHHHHHH------HH----------------
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHH---HhHHHhcCCchhHHH------HH----------------
Confidence 666665555444333332221 122211222221211 111111111000000 00
Q ss_pred ccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHH-hhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCc
Q 007827 288 QFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVL-IRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT 366 (588)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 366 (588)
+....... ++ . ... .......++. .........+. ........+........+
T Consensus 255 -----~~~~~~~~----~~--~--~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-- 308 (491)
T 4gc0_A 255 -----EIKHSLDH----GR--K--TGG----RLLMFGVGVIVIGVMLSIFQQF-------VGINVVLYYAPEVFKTLG-- 308 (491)
T ss_dssp -----HHHHHHHH----HH--H--HTT----HHHHSCCTHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHSS--
T ss_pred -----HHHHHHHh----hh--h--hhh----HHHHhcccHHHHHHHHHHHHHH-------hhhhHHHhcchHHHHhcC--
Confidence 00000000 00 0 000 0000001111 11110000000 000011111111111111
Q ss_pred cccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcc
Q 007827 367 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 446 (588)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (588)
..............+..++...+ ...+.||+||| +.+..+...+.++++.++....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~------------- 364 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVL----AIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFY------------- 364 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred CCccchhhHHHHHHHHHHHHHHH----HHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHh-------------
Confidence 00000111112222222233333 33458888877 4556666666666665554321
Q ss_pred cccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 007827 447 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAST 526 (588)
Q Consensus 447 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~ 526 (588)
........++..++..........+..+.+..|.+|++.|++++|+.+..+++++.+++.+.|.+.+......
T Consensus 365 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~- 437 (491)
T 4gc0_A 365 ------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA- 437 (491)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-
T ss_pred ------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 0112222222222222223334556778899999999999999999999999999999999887754310000
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchhhhccCCC
Q 007827 527 GDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNP 583 (588)
Q Consensus 527 ~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (588)
..+..+.|++++++++++.++.+++.||+|+|++||.++..+++.+++
T Consensus 438 ---------~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 438 ---------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp ---------HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred ---------hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence 002235788899999999999999999999999998777666554433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=2e-24 Score=230.08 Aligned_cols=178 Identities=11% Similarity=0.025 Sum_probs=138.6
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
+++....+....+...+........+| ++++++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHH
Confidence 344444444455555555554444554 4678999999999999999999999999999999999 69999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
+++.+++..... ..+++.++++|++.|++.+...+...+++.|.+|+ +.++..
T Consensus 102 ~~~~~~~~~~~~---------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~ 154 (438)
T 3o7q_A 102 ALGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE------SSGHFR 154 (438)
T ss_dssp HHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS------TTHHHH
T ss_pred HHHHHHHHhccc---------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc------hhHHHH
Confidence 998888733211 04678899999999999999999999999999964 223456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccc-------------------------hhhHHHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQ-SDVS-------------------------WAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~-~~~g-------------------------~~~~~~~~~~~~~~~~~~~~ 228 (588)
.++.+.+.++|..++|.+++++. +..+ ||+.|++.++..++..++.+
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999887 5554 99999776665544444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=3.5e-22 Score=208.70 Aligned_cols=164 Identities=11% Similarity=0.060 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
+....+...+....+.+.++.+ .+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHH
Confidence 3445555556655566666655 57899999999999999999999999999999999 699999999999999988888
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.++ .+.+.++++|++.|++.+...+...+++.|.+|+++ ++..++..+..
T Consensus 83 ~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 132 (375)
T 2gfp_A 83 VTT------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMG 132 (375)
T ss_dssp HHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHH
T ss_pred HHh------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence 776 467889999999999999999999999999997422 23458888889
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
.++|..++|.+++++.+.+||++.|++.++..++..
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999999999999999988899999988776554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=2.7e-22 Score=213.44 Aligned_cols=395 Identities=9% Similarity=-0.041 Sum_probs=214.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..+.+....+....++..+.++++.|+++++|+|+.+.|++.+.+.++..++++++|+++|| +||||+++++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Confidence 34444444455556666677899999998999999999999999999999999999999999 69999999887776543
Q ss_pred HHHH---HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 105 MLVL---SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 105 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
.... ..... ....++.++.+.+++.+...+...+...+..++ . .+.++..
T Consensus 87 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~--~~~~~~~ 139 (417)
T 2cfq_A 87 FAPFFIFIFGPL-----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--V--SRRSNFE 139 (417)
T ss_dssp HHHHHHHTHHHH-----------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH--H--HHHHTCC
T ss_pred HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--h--hhhcccc
Confidence 2211 11110 000123344444444444333333333333321 0 1122334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccC
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLK 261 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (588)
++..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+...|+ +++..+ .
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~-~---------------- 197 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT-V---------------- 197 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC-S----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc-c----------------
Confidence 555555678899999999998876 579999887655433222221111111 100000 0
Q ss_pred CCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhH-HHHHHH
Q 007827 262 LPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPI-WASAIV 340 (588)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 340 (588)
++ ... .++ ..... ..++ +....+........ ......
T Consensus 198 -~~-----------~~~-~~~--~~~~~----------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 198 -AN-----------AVG-ANH--SAFSL----------------------KLAL-----ELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp -SS-----------SSS-SCC--CCCCH----------------------HHHH-----HHTTCHHHHHHHHHHHHHHHH
T ss_pred -cc-----------ccc-ccc--ccccH----------------------HHHH-----HHhcCCchhhHHHHHHHHHHH
Confidence 00 000 000 00000 0000 00001111111111 111111
Q ss_pred HHHHHhcccceeeeeccccccc-cCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHH
Q 007827 341 YYVALVQQQTYVVFQALQSDRR-VGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMI 419 (588)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~ 419 (588)
++...++.+.++.. ..... .+ .........++.+..+++..+. .++.||+++| +.+..+.+
T Consensus 236 ~~~~~~~~~~~~~~---~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~----g~l~dr~g~~-------~~l~~~~~ 297 (417)
T 2cfq_A 236 YDVFDQQFANFFTS---FFATGEQG----TRVFGYVTTMGELLNASIMFFA----PLIINRIGGK-------NALLLAGT 297 (417)
T ss_dssp HHHHHHHHHHHHHH---TSSSHHHH----THHHHHHHHHHHHHHHHHHHHH----HHHHHHHCHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHhccCCC----hhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcHH-------HHHHHHHH
Confidence 11111111111110 01100 00 0001122233333333444443 3347887765 45555666
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHH
Q 007827 420 LAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA 499 (588)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~ 499 (588)
+.++++...+.. .+.+.++...++.+++.....+..+.++.|.+|++.||++.++.
T Consensus 298 ~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 298 IMSVRIIGSSFA------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHTTC------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 665554444321 23344444555566666666667788999999999999999994
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 500 -FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 500 -~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
+..+.+|+.+++.+.|.+.+.. ++...|.+.+++.+++.+..++..++.+..++
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 8888999999999999887643 45677888888888887776666665444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.31 E-value=5.7e-12 Score=133.98 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=141.8
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc--cchhHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF--GRYKTLGFASVAS 101 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grr~~l~~~~~~~ 101 (588)
+..+.+.+..++....++++..+++.|+++.+|++..+.+++.+...++..++.+++|+++|| + |||+.+..+.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 344555666677777888888999999998899999999999999999999999999999999 8 9999988777665
Q ss_pred H-HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 102 F-LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 102 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
. ++.+++.+.. ..+.+.+++..++.|++.+...+...+++.|.+|+ +.++.
T Consensus 331 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHH
T ss_pred HHHHHHHHHHhc----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhh
Confidence 5 4444433321 02456677778888998888888888999998863 23457
Q ss_pred hhhHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 181 FFNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 181 ~~~~~~~~~~~-g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.++
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999 99999999999999999999999887777666665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.24 E-value=5.8e-11 Score=125.71 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=129.1
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHH-HHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVY-LTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
+..+...+..++.....++...+++.| +++.+|++..+++.+.+...++..++.+++|+++|| +|||+.+..+.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 344555556666667777888999999 888889999999999999999999999999999999 699999999888887
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++.+.. +... +...++.|++.+...+...++..|.+++ . +. .+.
T Consensus 337 ~~~~~~~~~~------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~--~~--~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ---D--TK--YGS 384 (438)
T ss_dssp HHHHHHHHCC------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG---G--HH--HHH
T ss_pred HHHHHHHHcC------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc---c--cc--chh
Confidence 7766665542 2222 3344778899999999999998888863 2 22 233
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSC 224 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~ 224 (588)
++.. ...+|..++|.+.+++.+..| ++..|++.++..++.+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3333 567999999999999999888 9999887655444333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.08 E-value=2.5e-10 Score=120.79 Aligned_cols=165 Identities=7% Similarity=0.010 Sum_probs=116.2
Q ss_pred HHHhhhhhhhHHHHHHHhcCC---CchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 37 KLGTTGTSSNLLVYLTTIFNM---KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 37 ~~~~~~~~~~l~~yl~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
...++....++|.|+++.++. +....+.+.+...++..++.+++|+++|| +|||+.+..+.++.+++.++..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~-- 309 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA-- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHh--
Confidence 334444556688888766553 34455677777778888999999999999 699999988877776665554432
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH-HHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFA 192 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 192 (588)
.+.+.+++...+.+++.+...+....++.|.+|+ +.+++.+++ ++....+|
T Consensus 310 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 310 ----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp ----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHTTTHHHH
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHhHH
Confidence 1344555666666777666666667888998863 233455666 36677899
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus 362 ~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999988888988888877766666655444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.04 E-value=1.8e-09 Score=116.29 Aligned_cols=185 Identities=9% Similarity=0.037 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHH-----HHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-----FASVA 100 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~-----~~~~~ 100 (588)
.+.+.+..+.....+......++.|+++.++.+..+.+.+.....++..++.++.|+++|| +|||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence 3444445555566667777889999998889888888999999999999999999999999 69987654 56666
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.+++....... ..+.+.+.+.+++..++.|++.+...+...+++.|.+|++.. +.
T Consensus 364 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~------g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALY---------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN------SQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHC---------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS------SS
T ss_pred HHHHHHHHHHHHHhc---------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH------HH
Confidence 555555444432100 001112456677788888999999999999999999975322 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+.++++...++|..+++.+.+++.+ .++.+.|.+.++..+++.++.++..++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999888765 467777777766666666655555444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.79 E-value=9.6e-08 Score=102.54 Aligned_cols=177 Identities=12% Similarity=0.006 Sum_probs=113.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
...+..+..+........++.+..+.+............+...++.++++++.|| +|||+.++.+.....++.+.+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHH
Confidence 3333333333333333445556778888888888888888999999999999999 699999999888887776665543
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
.... .+..........+..+++. ...+....+.+|.+|+ +.|+.+.++.+....+
T Consensus 363 ~~~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt------~~R~~~~g~~~~~~~~ 417 (491)
T 4gc0_A 363 FYTQ------------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWL 417 (491)
T ss_dssp HHTT------------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT------TTHHHHHHHHHHHHHH
T ss_pred Hhcc------------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH------hHHHHHHHHHHHHHHH
Confidence 2200 0112222222222222333 3346677899999974 2234667777788888
Q ss_pred HHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHHHHHhcccee
Q 007827 192 AMMISLTVIVYVQSD------VSWAWGLGIPAFMMFLSCAMFFLGSRLY 234 (588)
Q Consensus 192 g~~i~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
|+.+++.+.+.+.+. .++.+.|++.+++.+++.++.++..||+
T Consensus 418 ~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 418 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 888888777665432 3455677777777777766666666654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.62 E-value=5.7e-09 Score=108.14 Aligned_cols=162 Identities=11% Similarity=0.024 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH-HHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA-SFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~-~~i~ 104 (588)
.+...+..++.....+.+..++|.|+++.+|+++.+.+.+.....++..++.++.|+++|| +||+ +..+... ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~~ 277 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHH
Confidence 3445555666677777788888999988899999999999999999999999999999999 5873 2233322 2222
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
......... + +.+.+.+++..++.|++.+...+...++..|.+| +.++...+.
T Consensus 278 ~~~~~~~~~-~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~g~~~g~ 330 (375)
T 2gfp_A 278 LLMWIPDWF-G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-------FLAGTAGAL 330 (375)
T ss_dssp SSSSHHHHH-H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-------HHHHHHHHH
T ss_pred HHHHHHhhh-c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-------cccchHHHH
Confidence 221111100 0 0245566777888899999999999999999874 124577888
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 217 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~ 217 (588)
.+...++|..++|.+.+.+.+..+|...+.+.+
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 888999999999999998887777777766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.36 E-value=1.9e-06 Score=93.24 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=98.0
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhh-ccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRL-TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 452 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~-~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (588)
.+.....++..++.++..+ +.||+ ||| +.+.++.++..++.++....
T Consensus 58 ~~~~~~~~~~~~~~~~~G~----l~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGW----IADRFFGKY-------NTILWLSLIYCVGHAFLAIF--------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHH----HHTTSSCSH-------HHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhcch-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3344445555555555444 48887 765 56677777777777666542
Q ss_pred cccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 007827 453 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL---AFVGFAISNYLNGFLISMVHRFTKGASTGDW 529 (588)
Q Consensus 453 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~---~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~ 529 (588)
..+.+.++...++.|++.+...+....++.|.+|++.|++..+. .+....+|..+++.+.+.+.+..
T Consensus 106 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 106 --EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp --SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred --cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 11566677778889999999999999999999999999877666 88888899999998888776532
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 530 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 530 ~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
+.++.|++.+++.++..+..++..
T Consensus 176 --------g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 176 --------GAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678777777666655554433
Done!