BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007828
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QKQ|A Chain A, Charcot-Leyden Crystal Protein - Mannose Complex
pdb|1G86|A Chain A, Charcot-Leyden Crystal ProteinN-Ethylmaleimide Complex
pdb|1LCL|A Chain A, Charcot-Leyden Crystal Protein
Length = 142
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 325 ETSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDL 382
E+ N PF DG F +I V D + + VNG ++S + +++P +V V+V + L
Sbjct: 77 ESKNMPFQDGQEFELSISVLPDKYQVMVNG--QSSYTFDHRIKPEAVKMVQVWRDISL 132
>pdb|1HDK|A Chain A, Charcot-Leyden Crystal Protein- Pcmbs Complex
Length = 141
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 325 ETSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDL 382
E+ N PF DG F +I V D + + VNG ++S + +++P +V V+V + L
Sbjct: 76 ESKNMPFQDGQEFELSISVLPDKYQVMVNG--QSSYTFDHRIKPEAVKMVQVWRDISL 131
>pdb|2XG3|A Chain A, Human Galectin-3 In Complex With A Benzamido-N-
Acetyllactoseamine Inhibitor
Length = 138
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYR-EKLEPWSVTGVKVAGGVDLFSA 385
S FPF G PF + V D F + VN H +R +KL S G ++G +DL SA
Sbjct: 76 SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLG--ISGDIDLTSA 133
>pdb|3AYA|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Thomsen- Friedenreich Antigen
pdb|3AYA|B Chain B, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Thomsen- Friedenreich Antigen
pdb|3AYC|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Gm1 Pentasaccharide
pdb|3AYC|B Chain B, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Gm1 Pentasaccharide
pdb|3AYD|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Tfn
pdb|3AYE|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Lactose
pdb|3AYE|B Chain B, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Lactose
Length = 135
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYR-EKLEPWSVTGVKVAGGVDLFSA 385
S FPF G PF + V D F + VN H +R +KL S G ++G +DL SA
Sbjct: 73 SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLG--ISGDIDLTSA 130
>pdb|1A3K|A Chain A, X-Ray Crystal Structure Of The Human Galectin-3
Carbohydrate Recognition Domain (Crd) At 2.1 Angstrom
Resolution
Length = 137
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYR-EKLEPWSVTGVKVAGGVDLFSA 385
S FPF G PF + V D F + VN H +R +KL S G ++G +DL SA
Sbjct: 75 SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLG--ISGDIDLTSA 132
>pdb|2NMN|A Chain A, Crystal Structure Of Human Galectin-3 Carbohydrate-
Recognising Domain At 2.45 Angstrom Resolution
pdb|2NMO|A Chain A, Crystal Structure Of Human Galectin-3
Carbohydrate-Recognition Domain At 1.35 Angstrom
Resolution
pdb|2NN8|A Chain A, Crystal Structure Of Human Galectin-3
Carbohydrate-Recognition Domain With Lactose Bound, At
1.35 Angstrom Resolution
pdb|3ZSJ|A Chain A, Crystal Structure Of Human Galectin-3 Crd In Complex With
Lactose At 0.86 Angstrom Resolution
Length = 138
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYR-EKLEPWSVTGVKVAGGVDLFSA 385
S FPF G PF + V D F + VN H +R +KL S G ++G +DL SA
Sbjct: 76 SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLG--ISGDIDLTSA 133
>pdb|3ZSK|A Chain A, Crystal Structure Of Human Galectin-3 Crd With Glycerol
Bound At 0.90 Angstrom Resolution
pdb|3ZSL|A Chain A, Crystal Structure Of Apo Human Galectin-3 Crd At 1.08
Angstrom Resolution, At Cryogenic Temperature
pdb|3ZSM|A Chain A, Crystal Structure Of Apo Human Galectin-3 Crd At 1.25
Angstrom Resolution, At Room Temperature
Length = 138
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYR-EKLEPWSVTGVKVAGGVDLFSA 385
S FPF G PF + V D F + VN H +R +KL S G ++G +DL SA
Sbjct: 76 SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLG--ISGDIDLTSA 133
>pdb|3T1L|A Chain A, Crystal Structure Of Human Galectin-3 In Complex With
Methyl 2-O- Acetyl-3-O-Toluoyl-Beta-D-Talopyranoside
pdb|3T1M|A Chain A, Crystal Structure Of Human Galectin-3 Carbohydrate
Recognition Domain In Complex With Methyl
3-Deoxy-2-O-Toluoyl-3-N-Toluoyl-Beta-D- Talopyranoside
Length = 143
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYR-EKLEPWSVTGVKVAGGVDLFSA 385
S FPF G PF + V D F + VN H +R +KL S G ++G +DL SA
Sbjct: 81 SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLG--ISGDIDLTSA 138
>pdb|1KJL|A Chain A, High Resolution X-Ray Structure Of Human Galectin-3 In
Complex With Lacnac
pdb|1KJR|A Chain A, Crystal Structure Of The Human Galectin-3 Crd In Complex
With A 3'- Derivative Of N-Acetyllactosamine
Length = 146
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYR-EKLEPWSVTGVKVAGGVDLFSA 385
S FPF G PF + V D F + VN H +R +KL S G ++G +DL SA
Sbjct: 84 SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLG--ISGDIDLTSA 141
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 326 TSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFS 384
T + PF F I V D F + VNG+H +L Y ++ P + + + G V++ S
Sbjct: 92 TYDTPFKREKSFEIVIMVLKDKFQVAVNGKH--TLLYGHRIGPEKIDTLGIYGKVNIHS 148
>pdb|3VKN|A Chain A, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKN|B Chain B, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKO|A Chain A, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
pdb|3VKO|B Chain B, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
Length = 153
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 326 TSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFS 384
T + PF F I V D F + VNG+H +L Y ++ P + + + G V++ S
Sbjct: 92 TYDTPFKREKSFEIVIMVLKDKFQVAVNGKH--TLLYGHRIGPEKIDTLGIYGKVNIHS 148
>pdb|3AP4|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP5|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain
pdb|3AP6|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP7|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
Sialic Acid
pdb|3APB|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3APB|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3AP9|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With
Lacto-N-Fucopentaose Iii
Length = 154
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 326 TSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFS 384
T + PF F I V D F + VNG+H +L Y ++ P + + + G V++ S
Sbjct: 92 TYDTPFKREKSFEIVIMVLKDKFQVAVNGKH--TLLYGHRIGPEKIDTLGIYGKVNIHS 148
>pdb|3GWM|A Chain A, Crystal Structure Of The Holo-[acyl-Carrier-Protein]
Synthase (Acps) From Mycobacterium Smegmatis
Length = 129
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 95 VQGLG-DLYSLKNMLGEDSRPLLVWGHMRLLLSRSDALPETAQGVKEAAIAWKDLLSVIE 153
+ G+G DL S+ + + RP V+ R DA +++ + A W +VI+
Sbjct: 2 IVGVGIDLVSIPDFAEQVDRPGTVFAETFTPGERRDAADKSSSAARHLAARWAAKEAVIK 61
Query: 154 EEKASKFSRRKNCP 167
+S+FS+R P
Sbjct: 62 AWSSSRFSKRPALP 75
>pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
pdb|3EPD|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
pdb|3EPF|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 213
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 288 VEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFP-FVDGNPFTTTIWV--- 343
V++ Q T P P + ++ P + + ++ G +TS P F+ G T++W+
Sbjct: 122 VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVP 181
Query: 344 --GLDGFHMTVNGRHET 358
+DG +T HE+
Sbjct: 182 SSQVDGKQVTCKVEHES 198
>pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2
Length = 221
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 288 VEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFP-FVDGNPFTTTIWV--- 343
V++ Q T P P + ++ P + + ++ G +TS P F+ G T++W+
Sbjct: 123 VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVP 182
Query: 344 --GLDGFHMTVNGRHET 358
+DG +T HE+
Sbjct: 183 SSQVDGKQVTCKVEHES 199
>pdb|2YV8|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Galectin-8
pdb|2YXS|A Chain A, Crystal Sturcture Of N-Terminal Domain Of Human Galectin-8
With D- Lactose
Length = 164
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 326 TSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFS 384
T + PF F I V D F + VNG+H +L Y ++ P + + + G V++ S
Sbjct: 99 TYDTPFKREKSFEIVIXVLKDKFQVAVNGKH--TLLYGHRIGPEKIDTLGIYGKVNIHS 155
>pdb|2LQU|A Chain A, Structure Of Decorbin-binding Protein A From Borrelia
Burgdorferi
Length = 168
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 99 GDLYSLKNMLGEDSRPLLVWGHMRLLLSRSDAL----PETAQGVKEAAIAWKDLLSVIEE 154
G+ ++ +++ E S+PL G + + SDA P TAQGV E A ++ L +
Sbjct: 87 GEFSAMYDLMFEVSKPLQKLGIQEMTKTVSDAAEENPPTTAQGVLEIAKKMREKLQRVHT 146
Query: 155 EKASKFSRRKN 165
+ +++N
Sbjct: 147 KNYCTLKKKEN 157
>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3M84|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3QTY|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
pdb|3QTY|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
Length = 350
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 73 GSQGVKEVKK-TQKLFEKPHIINVQGLGDLYSLKNMLGEDSRPLLV 117
G+Q V+ K+ +K F + + + G LYSLKN++ P+LV
Sbjct: 19 GNQAVERXKQHVKKTFTQDVLTGLGSFGSLYSLKNIINNYDDPVLV 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,306,518
Number of Sequences: 62578
Number of extensions: 709978
Number of successful extensions: 1316
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 23
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)