Query 007828
Match_columns 588
No_of_seqs 289 out of 1828
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 15:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 1E-141 3E-146 1174.7 51.4 542 13-584 1-561 (636)
2 KOG2287 Galactosyltransferases 100.0 1.1E-46 2.3E-51 397.8 22.2 259 326-587 5-277 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 1.4E-40 3E-45 352.7 18.6 201 365-583 103-323 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 1.8E-37 3.9E-42 300.7 14.6 157 429-587 1-171 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 3E-32 6.5E-37 285.9 14.5 163 411-582 76-267 (382)
6 smart00276 GLECT Galectin. Gal 100.0 5.2E-31 1.1E-35 241.2 15.7 127 182-387 1-127 (128)
7 cd00070 GLECT Galectin/galacto 100.0 5.3E-30 1.1E-34 233.9 15.4 126 182-386 2-127 (127)
8 PF00337 Gal-bind_lectin: Gala 100.0 6.5E-30 1.4E-34 234.0 14.1 132 181-387 1-133 (133)
9 KOG2288 Galactosyltransferases 99.9 2.5E-26 5.5E-31 229.6 17.2 160 412-572 8-184 (274)
10 KOG3587 Galectin, galactose-bi 99.9 6E-25 1.3E-29 205.7 14.8 135 181-389 5-140 (143)
11 PF02434 Fringe: Fringe-like; 99.3 3.6E-12 7.8E-17 129.8 9.2 152 416-583 7-167 (252)
12 KOG2246 Galactosyltransferases 99.0 2.5E-09 5.4E-14 114.6 10.7 143 412-586 88-237 (364)
13 PLN03153 hypothetical protein; 98.0 2.3E-05 5.1E-10 86.9 10.8 144 413-581 120-279 (537)
14 PF01755 Glyco_transf_25: Glyc 90.5 3.5 7.6E-05 39.9 11.5 91 419-521 4-101 (200)
15 KOG3708 Uncharacterized conser 90.4 0.9 1.9E-05 51.1 8.0 130 414-580 25-158 (681)
16 PF00535 Glycos_transf_2: Glyc 88.0 12 0.00026 33.1 12.3 147 417-578 2-167 (169)
17 cd06532 Glyco_transf_25 Glycos 87.2 4.1 8.9E-05 37.3 8.9 111 419-585 2-119 (128)
18 cd04192 GT_2_like_e Subfamily 85.1 17 0.00037 34.6 12.5 80 497-579 74-170 (229)
19 cd06423 CESA_like CESA_like is 80.4 28 0.00061 30.6 11.2 34 496-529 69-102 (180)
20 cd04187 DPM1_like_bac Bacteria 75.8 25 0.00054 32.7 9.9 121 448-579 29-162 (181)
21 cd04179 DPM_DPG-synthase_like 75.6 37 0.0008 31.3 10.9 75 463-542 42-118 (185)
22 PF13641 Glyco_tranf_2_3: Glyc 70.5 22 0.00049 34.2 8.4 119 416-541 2-124 (228)
23 cd04196 GT_2_like_d Subfamily 70.0 66 0.0014 30.2 11.4 76 448-529 27-103 (214)
24 cd06433 GT_2_WfgS_like WfgS an 69.4 74 0.0016 29.2 11.4 82 496-579 66-157 (202)
25 cd06438 EpsO_like EpsO protein 69.4 51 0.0011 30.9 10.4 38 504-541 80-118 (183)
26 cd02520 Glucosylceramide_synth 67.3 1.2E+02 0.0025 28.9 14.1 78 449-529 31-110 (196)
27 PF13506 Glyco_transf_21: Glyc 66.6 19 0.00042 34.8 7.0 83 490-579 16-116 (175)
28 cd04186 GT_2_like_c Subfamily 61.1 1.2E+02 0.0026 26.9 11.9 30 500-529 69-98 (166)
29 cd06421 CESA_CelA_like CESA_Ce 61.1 50 0.0011 31.7 8.8 32 498-529 77-108 (234)
30 PRK11204 N-glycosyltransferase 57.3 1.6E+02 0.0036 31.7 12.9 105 415-529 54-158 (420)
31 TIGR03472 HpnI hopanoid biosyn 55.8 2.4E+02 0.0051 30.4 13.7 108 415-529 41-150 (373)
32 cd04195 GT2_AmsE_like GT2_AmsE 52.4 1.1E+02 0.0023 28.8 9.3 44 497-540 72-118 (201)
33 cd06442 DPM1_like DPM1_like re 50.7 2.2E+02 0.0047 27.1 11.3 44 498-541 71-116 (224)
34 cd06439 CESA_like_1 CESA_like_ 48.5 2.7E+02 0.0058 27.2 14.6 119 414-542 28-148 (251)
35 cd04191 Glucan_BSP_ModH Glucan 46.3 1.6E+02 0.0035 30.3 10.1 110 419-529 3-119 (254)
36 KOG1594 Uncharacterized enzyme 46.1 49 0.0011 35.0 6.2 52 327-382 130-187 (305)
37 COG1215 Glycosyltransferases, 45.8 3.5E+02 0.0075 29.0 13.0 107 415-529 54-161 (439)
38 PF13632 Glyco_trans_2_3: Glyc 45.2 40 0.00086 31.9 5.1 68 508-579 1-87 (193)
39 cd04185 GT_2_like_b Subfamily 44.9 1.6E+02 0.0034 27.8 9.2 33 496-529 71-103 (202)
40 cd06434 GT2_HAS Hyaluronan syn 44.1 3E+02 0.0065 26.4 12.9 74 448-529 28-101 (235)
41 cd02525 Succinoglycan_BP_ExoA 43.9 3E+02 0.0065 26.4 15.3 87 447-540 30-118 (249)
42 PRK14583 hmsR N-glycosyltransf 43.1 4.9E+02 0.011 28.7 13.9 105 415-529 75-179 (444)
43 PRK10714 undecaprenyl phosphat 42.6 2.8E+02 0.0061 29.4 11.6 124 448-580 38-173 (325)
44 cd06427 CESA_like_2 CESA_like_ 39.0 3.5E+02 0.0077 26.5 11.0 34 496-529 75-108 (241)
45 TIGR03469 HonB hopene-associat 38.0 5.5E+02 0.012 27.7 13.7 110 415-529 40-157 (384)
46 cd06435 CESA_NdvC_like NdvC_li 37.1 1.5E+02 0.0032 28.7 7.9 34 496-529 73-108 (236)
47 PLN02726 dolichyl-phosphate be 31.1 5.2E+02 0.011 25.4 15.2 46 496-541 84-131 (243)
48 cd04184 GT2_RfbC_Mx_like Myxoc 26.9 5.2E+02 0.011 24.0 13.7 45 496-540 74-121 (202)
49 cd04188 DPG_synthase DPG_synth 26.1 5.7E+02 0.012 24.3 10.0 88 448-541 30-120 (211)
50 cd06420 GT2_Chondriotin_Pol_N 25.2 5.2E+02 0.011 23.5 10.7 44 497-540 71-114 (182)
51 TIGR03111 glyc2_xrt_Gpos1 puta 25.2 9.5E+02 0.021 26.5 14.1 47 496-542 122-171 (439)
52 COG1216 Predicted glycosyltran 24.6 8E+02 0.017 25.4 14.6 105 416-529 4-108 (305)
53 PRK14716 bacteriophage N4 adso 24.0 5.5E+02 0.012 29.5 10.5 70 505-580 158-248 (504)
54 PF13704 Glyco_tranf_2_4: Glyc 23.2 4.5E+02 0.0098 22.0 7.7 48 474-522 40-88 (97)
55 COG4092 Predicted glycosyltran 23.0 2.1E+02 0.0046 30.6 6.4 63 465-527 52-116 (346)
56 cd02510 pp-GalNAc-T pp-GalNAc- 22.4 8.4E+02 0.018 24.9 12.1 34 496-529 74-107 (299)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-141 Score=1174.66 Aligned_cols=542 Identities=45% Similarity=0.813 Sum_probs=509.3
Q ss_pred ccccchhHHHHHHHHHHHHHhhcccccccccccchhhhhhcccccCccccCCCCCCCcccCCCCcchhhhccccCCCCee
Q 007828 13 MRNWSGGLLIMALAIILVMSYSFMGTQTQTQHRTQTQKQKHKQSANDFFRNHPSNDSDMKGSQGVKEVKKTQKLFEKPHI 92 (588)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
||||+||++|++|||+|++||+ ++++|.++..+ +.+|+.|+|+||+|+..+. +++|+ +++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 65 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYV-LLKNPIGESYL----------QSVFPSNTTNPLEWLDPTN-PPAVQ---NPENSSQV 65 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHH-HhcCCCCCCCc----------ccccccccCCchhhcccCC-Ccccc---CCCcccee
Confidence 9999999999999999999998 99999998766 6689999999999998887 87877 99999999
Q ss_pred eccC-CCcccccCCCCCCCCCcccccchhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHhHHhhhccC-------CCCC
Q 007828 93 INVQ-GLGDLYSLKNMLGEDSRPLLVWGHMRLLLSRSDALPETAQGVKEAAIAWKDLLSVIEEEKASKF-------SRRK 164 (588)
Q Consensus 93 ~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~l~~~~~~~~~~~~-------~~~~ 164 (588)
|+.+ ++|+||+++|+|+|++++|++|+|||+|++|||+||+|++||+||+.||++|+++++++++... ..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (636)
T PLN03133 66 ISTDTIVSSLFATRNISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEK 145 (636)
T ss_pred eccccchhhccccccCchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCC
Confidence 9999 9999999999999999999999999999999999999999999999999999999996555322 2367
Q ss_pred CCCcceecccccccCCC-eeEecCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeEEEEeeecCCCCCCCCC
Q 007828 165 NCPPFVSNLSKSLSSGR-LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEP 243 (588)
Q Consensus 165 ~cp~sv~~~~~~~~~~~-~~~~iPcGL~~Gs~ItVvG~p~~~~~~F~I~L~g~~~~~~~~~~iiLHfNpR~~~d~~~~~p 243 (588)
+||+||+.|++++++++ |++.|||||.+|++|||+|+|++++++|+|||+|+..+|++++||||||||||++|+++++|
T Consensus 146 ~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~ 225 (636)
T PLN03133 146 QCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDP 225 (636)
T ss_pred CCchhhhhcccccccCCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCC
Confidence 99999999999988755 99999999999999999999999999999999999888877899999999999999999999
Q ss_pred EEEEcCccCCCCcccceeeCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCC
Q 007828 244 FIIQNSWTNELGWGKEERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGA 323 (588)
Q Consensus 244 vIv~Nt~~~~~~WG~EeRc~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (588)
+||||||+.+++||.||||++|+|.++++||||++||||+|++++++++++.+++ .++++..++++.
T Consensus 226 vIV~NT~~~~~~WG~EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 292 (636)
T PLN03133 226 VIVQNTWTAAHDWGEEERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSN-------------GSRRSPMSQEAT 292 (636)
T ss_pred EEEeCCCcCCCcccHhhhcCCCCccccccccchhhhhhhhccccccccccccccc-------------cccccccccccc
Confidence 9999999933999999999999999999999999999999999999999998773 356666678899
Q ss_pred CCCCCCCCCCCCcEEEEEEEccceEEEEeCCeEEEEEeccccCCCcceeEEEEeCccccccccccCCCCCCCcccccchh
Q 007828 324 HETSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVE 403 (588)
Q Consensus 324 ~~~~~fPF~~G~~F~ltI~~g~egf~v~VnG~h~tsF~yR~~l~~~~v~~l~I~GDv~L~sV~a~gLP~~~~~~~~~d~~ 403 (588)
+..++|||++|++|++||+||.|||||+|||+|+|+|+||++++||.|++|+|+|||+|++|.+.+||++|++++.+|++
T Consensus 293 ~~~~~fPF~~G~~F~lti~~g~egf~v~VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~~~~d~e 372 (636)
T PLN03133 293 KARRYFPFKQGYLSVATLRVGTEGIQMTVDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSEHVIDLE 372 (636)
T ss_pred ccccCCCCCCCCcEEEEEEecCCEEEEEECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCC-CCCeeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEee
Q 007828 404 HLKAPLIS-RKRLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPF 482 (588)
Q Consensus 404 ~L~~p~~~-~~~v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf 482 (588)
.|++||++ +++++|||+|+|+|+|++||+|||+|||+....++..++++|++|.+.+..++.+|++|+++|||||++||
T Consensus 373 ~lkAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF 452 (636)
T PLN03133 373 ALKSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPF 452 (636)
T ss_pred HhcCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEee
Confidence 99999987 56799999999999999999999999999877777789999999999998999999999999999999999
Q ss_pred cccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeEEEEeeCCCCCccCCCCCCC------
Q 007828 483 VDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWN------ 555 (588)
Q Consensus 483 ~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~-~~~~~l~~G~v~~~~~P~Rd~~sKWy------ 555 (588)
+|+|+|||+||+++++|+.+|++++|+||+|||+|||+++|+++|+. ...+.+|+|++..+.+|+|++.+|||
T Consensus 453 ~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey 532 (636)
T PLN03133 453 VDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW 532 (636)
T ss_pred echhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC
Confidence 99999999999999999999999999999999999999999999987 55678999999999999999999999
Q ss_pred --CCCCCCCccCceEEcCChHHHHHHHHHHh
Q 007828 556 --GRIPHTHHGPMVQVISSPGTLRNSLSKAT 584 (588)
Q Consensus 556 --~~YPpYc~G~gYILS~s~davrrLl~aA~ 584 (588)
+.|||||+|+|||||+ |+|++|+.++.
T Consensus 533 p~~~YPpYasG~gYVlS~--Dla~~L~~~s~ 561 (636)
T PLN03133 533 PEETYPPWAHGPGYVVSR--DIAKEVYKRHK 561 (636)
T ss_pred CCCCCCCCCCcCEEEEcH--HHHHHHHHhhh
Confidence 8999999999999999 89999988763
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=397.78 Aligned_cols=259 Identities=32% Similarity=0.452 Sum_probs=232.2
Q ss_pred CCCCCCCCCCcEEEEEEEccceEEEEeCCeEEEEEeccccCCCcceeEEEEeCccccccccccCCCCCCCcccccchhhh
Q 007828 326 TSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHL 405 (588)
Q Consensus 326 ~~~fPF~~G~~F~ltI~~g~egf~v~VnG~h~tsF~yR~~l~~~~v~~l~I~GDv~L~sV~a~gLP~~~~~~~~~d~~~L 405 (588)
.+.+|+..+..|+.++.++.+++++.+++++.++|.++...+.+..++...++.+..+.......+.+...-. .....+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 83 (349)
T KOG2287|consen 5 EFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQ-KFFYLL 83 (349)
T ss_pred cccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhc-cChhhh
Confidence 4679999999999999999999999999999999999998888889999999999777777777777654321 133456
Q ss_pred cCCCCCCC--CeeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCCh-hhhHHHHHHHhhcCCeEEEee
Q 007828 406 KAPLISRK--RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNR-QVNFELWKEAQAYGDIQIMPF 482 (588)
Q Consensus 406 ~~p~~~~~--~v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~-~~~~~L~~Eae~ygDII~ldf 482 (588)
..|+.|.. .++|+++|+|+++|++||+|||+|||++..+++..++++|++|.++++ .++.+|.+|++.|||||++||
T Consensus 84 ~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df 163 (349)
T KOG2287|consen 84 YLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDF 163 (349)
T ss_pred cCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEec
Confidence 66777733 389999999999999999999999999998889999999999999865 568899999999999999999
Q ss_pred cccccchhHHHHHHHHHh-hccCCCcEEEEeCCceeeeHHHHHHHhhcC--CCCCeEEEEeeCCCCCccCCCCCCC----
Q 007828 483 VDYYSLISLKTIAICIFG-TKILPAKYIMKTDDDAFVRIDEVLSNLKEK--PSNGLLFGLMSYDSSPQRDKDSKWN---- 555 (588)
Q Consensus 483 ~DsY~NLtlKTla~l~wa-~~c~~akfvmK~DDDtfVnvd~Ll~~L~~~--~~~~l~~G~v~~~~~P~Rd~~sKWy---- 555 (588)
.|+|+|+|+||++++.|+ .+|++++||||+|||+||++++|+.+|... +.+.+|+|++.....|+|++.+|||
T Consensus 164 ~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~ 243 (349)
T KOG2287|consen 164 EDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES 243 (349)
T ss_pred ccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH
Confidence 999999999999999998 569999999999999999999999999985 7889999999999999999999999
Q ss_pred ----CCCCCCCccCceEEcCChHHHHHHHHHHhccC
Q 007828 556 ----GRIPHTHHGPMVQVISSPGTLRNSLSKATRKE 587 (588)
Q Consensus 556 ----~~YPpYc~G~gYILS~s~davrrLl~aA~r~~ 587 (588)
+.|||||+|+|||+|+ ++|++|+.++.+..
T Consensus 244 ~y~~~~YP~Y~sG~gYvis~--~~a~~l~~~s~~~~ 277 (349)
T KOG2287|consen 244 EYPCSVYPPYASGPGYVISG--DAARRLLKASKHLK 277 (349)
T ss_pred HCCCCCCCCcCCCceeEecH--HHHHHHHHHhcCCC
Confidence 7899999999999999 89999999776543
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-40 Score=352.74 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=169.6
Q ss_pred cCCCcceeEEEEeCccccccccccCCCCCCCcccccchhhhcCCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHhcCCCCC
Q 007828 365 KLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHLKAPLISRKRLVMLIGVFSTGNNFERRMALRRSWMQYPAV 444 (588)
Q Consensus 365 ~l~~~~v~~l~I~GDv~L~sV~a~gLP~~~~~~~~~d~~~L~~p~~~~~~v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v 444 (588)
.||+|.+++.+ +.++.++++|+++++.+ + |...+++++|+|+|.|+++|++||+|||+|||+....
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~------~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~ 168 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKK------T--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEK 168 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCccccccc------c--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccc
Confidence 36777777665 66777889999987653 2 3333677999999999999999999999999986542
Q ss_pred -----CCCCceEEEEeeccC--ChhhhHHHHHHHhhcCCeEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCcee
Q 007828 445 -----RSGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAF 517 (588)
Q Consensus 445 -----~~~~V~v~FvvG~~~--~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtf 517 (588)
....++++||+|.+. +..++.+|++|+++|||||++||+|+|.|||+||+++|+|+..+++++||||+|||+|
T Consensus 169 ~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvf 248 (408)
T PLN03193 169 RKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVH 248 (408)
T ss_pred ccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCce
Confidence 236799999999987 5678999999999999999999999999999999999999988899999999999999
Q ss_pred eeHHHHHHHhhc-CCCCCeEEEEeeCCCCCccCCCCCCC------------CCCCCCCccCceEEcCChHHHHHHHHHH
Q 007828 518 VRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWN------------GRIPHTHHGPMVQVISSPGTLRNSLSKA 583 (588)
Q Consensus 518 Vnvd~Ll~~L~~-~~~~~l~~G~v~~~~~P~Rd~~sKWy------------~~YPpYc~G~gYILS~s~davrrLl~aA 583 (588)
||+++|+.+|+. ....++|+|++.. .|.|++.++|| +.|||||+|+|||||+ |+++.|+.+.
T Consensus 249 Vnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~--DLa~~I~~n~ 323 (408)
T PLN03193 249 VNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISK--DLASYISINQ 323 (408)
T ss_pred EcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehH--HHHHHHHhCh
Confidence 999999999987 3344699999975 37887655544 4699999999999999 7888876444
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.8e-37 Score=300.71 Aligned_cols=157 Identities=31% Similarity=0.467 Sum_probs=145.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEeeccC--ChhhhHHHHHHHhhcCCeEEEeecccccchhHHHHHHHHHh-hccCC
Q 007828 429 ERRMALRRSWMQYPAVRSGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFG-TKILP 505 (588)
Q Consensus 429 ~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~--~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla~l~wa-~~c~~ 505 (588)
+||++||+|||+........++++||+|.+. +..++..|.+|+++|+|||++||.|+|+|+|+||+++++|+ .+|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998877778999999999998 67788889999999999999999999999999999999998 67888
Q ss_pred CcEEEEeCCceeeeHHHHHHHhhcC---CCCCeEEEEeeCCCCCccCCCCCCC--------CCCCCCCccCceEEcCChH
Q 007828 506 AKYIMKTDDDAFVRIDEVLSNLKEK---PSNGLLFGLMSYDSSPQRDKDSKWN--------GRIPHTHHGPMVQVISSPG 574 (588)
Q Consensus 506 akfvmK~DDDtfVnvd~Ll~~L~~~---~~~~l~~G~v~~~~~P~Rd~~sKWy--------~~YPpYc~G~gYILS~s~d 574 (588)
++|++|+|||+|||+++|..+|+.. .....++|.+....+|.|++.+||| +.|||||+|+||+||+ +
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~--~ 158 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSS--D 158 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecH--H
Confidence 9999999999999999999999985 5677899999988899999999998 7899999999999999 8
Q ss_pred HHHHHHHHHhccC
Q 007828 575 TLRNSLSKATRKE 587 (588)
Q Consensus 575 avrrLl~aA~r~~ 587 (588)
+|++|+.+++..+
T Consensus 159 ~v~~i~~~~~~~~ 171 (195)
T PF01762_consen 159 VVKRIYKASSHTP 171 (195)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999988754
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.98 E-value=3e-32 Score=285.94 Aligned_cols=163 Identities=26% Similarity=0.380 Sum_probs=150.9
Q ss_pred CCCCeeEEEEEeCCCCC--HHHHHHHHHHhcCCCCCC------CCCceEEEEeeccCCh--hhhHHHHHHHhhcCCeEEE
Q 007828 411 SRKRLVMLIGVFSTGNN--FERRMALRRSWMQYPAVR------SGDLAVRFFIGLHKNR--QVNFELWKEAQAYGDIQIM 480 (588)
Q Consensus 411 ~~~~v~LlI~V~Sap~n--~~RR~AIR~TW~~~~~v~------~~~V~v~FvvG~~~~~--~~~~~L~~Eae~ygDII~l 480 (588)
...+..+++||+|..++ +.||++.|+||+++..+. .+.+.++|++|++++. +++++|++|+++|+|||++
T Consensus 76 ~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil 155 (382)
T PTZ00210 76 KAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL 155 (382)
T ss_pred ccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE
Confidence 36789999999999999 999999999999999877 7889999999999987 8999999999999999999
Q ss_pred ee------------------cccccchhHHHHHHHHHh-hccCCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeEEEEee
Q 007828 481 PF------------------VDYYSLISLKTIAICIFG-TKILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMS 541 (588)
Q Consensus 481 df------------------~DsY~NLtlKTla~l~wa-~~c~~akfvmK~DDDtfVnvd~Ll~~L~~~~~~~l~~G~v~ 541 (588)
|| .|+|.++|+||+++|+|+ ..||+++||||+|||+|||+++++++|+..+++++|+|++.
T Consensus 156 pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~prr~LY~G~v~ 235 (382)
T PTZ00210 156 PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPRHGLYMGRYN 235 (382)
T ss_pred ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCCCceEEEeeC
Confidence 99 666678999999999998 56899999999999999999999999988888889999999
Q ss_pred CCCCCccCCCCCCCCCCCCCCccCceEEcCChHHHHHHHHH
Q 007828 542 YDSSPQRDKDSKWNGRIPHTHHGPMVQVISSPGTLRNSLSK 582 (588)
Q Consensus 542 ~~~~P~Rd~~sKWy~~YPpYc~G~gYILS~s~davrrLl~a 582 (588)
....|.|++ |||||+|+||+||+ |+++.|+..
T Consensus 236 ~~~~p~Rd~-------~PpY~~G~gYvLSr--DVA~~Lvs~ 267 (382)
T PTZ00210 236 YYNRIWRRN-------QLTYVNGYCITLSR--DTAQAIISY 267 (382)
T ss_pred CCCccccCC-------CCCccccceeeccH--HHHHHHHhh
Confidence 888889975 69999999999999 899999876
No 6
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.97 E-value=5.2e-31 Score=241.22 Aligned_cols=127 Identities=35% Similarity=0.490 Sum_probs=118.1
Q ss_pred eeEecCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCccccee
Q 007828 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (588)
Q Consensus 182 ~~~~iPcGL~~Gs~ItVvG~p~~~~~~F~I~L~g~~~~~~~~~~iiLHfNpR~~~d~~~~~pvIv~Nt~~~~~~WG~EeR 261 (588)
|+..||+||.+|+.|+|.|+|..++++|.|||+.+ .++|+|||||||.++ +||+||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~~------~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNEN------KIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCCC------EEEEeCccC-CccchheE
Confidence 46789999999999999999999999999999985 368999999999875 899999998 89999999
Q ss_pred eCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEEEE
Q 007828 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (588)
Q Consensus 262 c~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~ltI 341 (588)
+ ..|||++|++|+++|
T Consensus 68 ~----------------------------------------------------------------~~~Pf~~g~~F~l~i 83 (128)
T smart00276 68 E----------------------------------------------------------------GGFPFQPGQPFDLTI 83 (128)
T ss_pred c----------------------------------------------------------------CCCCCCCCCEEEEEE
Confidence 8 369999999999999
Q ss_pred EEccceEEEEeCCeEEEEEeccccCCCcceeEEEEeCccccccccc
Q 007828 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFA 387 (588)
Q Consensus 342 ~~g~egf~v~VnG~h~tsF~yR~~l~~~~v~~l~I~GDv~L~sV~a 387 (588)
.++.++|+|+|||+|+++|+||. +++.|+.|.|.||++|++|..
T Consensus 84 ~~~~~~f~i~vng~~~~~f~~R~--~~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 84 IVQPDHFQIFVNGVHITTFPHRL--PLESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEcCCEEEEEECCEeEEEecCCC--CcccEeEEEEeCCEEEEEEEE
Confidence 99999999999999999999994 568999999999999999864
No 7
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=5.3e-30 Score=233.93 Aligned_cols=126 Identities=36% Similarity=0.520 Sum_probs=117.4
Q ss_pred eeEecCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCccccee
Q 007828 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (588)
Q Consensus 182 ~~~~iPcGL~~Gs~ItVvG~p~~~~~~F~I~L~g~~~~~~~~~~iiLHfNpR~~~d~~~~~pvIv~Nt~~~~~~WG~EeR 261 (588)
|...|||||.+|+.|+|.|+|..++++|.|||+++ ..+++|||||||..+ +||+||+.+ |.||.|||
T Consensus 2 ~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~------~~~i~lH~n~rf~~~------~IV~Ns~~~-g~Wg~Eer 68 (127)
T cd00070 2 YKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTG------SSDIALHFNPRFDEN------VIVRNSFLN-GNWGPEER 68 (127)
T ss_pred cccccCCCCcCCCEEEEEEEECCCCCEEEEEEecC------CCCEEEEEeeeCCCC------EEEEcCCCC-CEecHhhc
Confidence 56789999999999999999999999999999985 238999999999986 899999999 89999999
Q ss_pred eCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEEEE
Q 007828 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (588)
Q Consensus 262 c~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~ltI 341 (588)
+ ..|||.+|++|+|+|
T Consensus 69 ~----------------------------------------------------------------~~~pf~~g~~F~l~i 84 (127)
T cd00070 69 S----------------------------------------------------------------GGFPFQPGQPFELTI 84 (127)
T ss_pred c----------------------------------------------------------------CCCCCCCCCeEEEEE
Confidence 9 369999999999999
Q ss_pred EEccceEEEEeCCeEEEEEeccccCCCcceeEEEEeCcccccccc
Q 007828 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAF 386 (588)
Q Consensus 342 ~~g~egf~v~VnG~h~tsF~yR~~l~~~~v~~l~I~GDv~L~sV~ 386 (588)
.++.++|+|+|||+|+++|+|| +++++|+.|.|.||+.|++|.
T Consensus 85 ~~~~~~f~i~vng~~~~~F~~R--~~~~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 85 LVEEDKFQIFVNGQHFFSFPHR--LPLESIDYLSINGDVSLTSVE 127 (127)
T ss_pred EEcCCEEEEEECCEeEEEecCc--CChhhEEEEEEeCCEEEEEeC
Confidence 9999999999999999999999 556999999999999998873
No 8
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=6.5e-30 Score=233.97 Aligned_cols=132 Identities=34% Similarity=0.539 Sum_probs=119.7
Q ss_pred CeeEecCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeEEEEeeecCC-CCCCCCCEEEEcCccCCCCcccc
Q 007828 181 RLIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPG-DNMTEEPFIIQNSWTNELGWGKE 259 (588)
Q Consensus 181 ~~~~~iPcGL~~Gs~ItVvG~p~~~~~~F~I~L~g~~~~~~~~~~iiLHfNpR~~~-d~~~~~pvIv~Nt~~~~~~WG~E 259 (588)
+|++.||+||.+|+.|+|.|++..++++|.|||+++. ..+.++++|||||||.. . +||+||+.+ |.||.|
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~~~------~iv~Ns~~~-g~Wg~E 71 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDEQN------VIVRNSRIN-GKWGQE 71 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTTEE------EEEEEEEET-TEE-SE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCCCc------eEEEeceEC-CEeccc
Confidence 4889999999999999999999999999999999975 23468999999999998 5 899999999 899999
Q ss_pred eeeCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEE
Q 007828 260 ERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTT 339 (588)
Q Consensus 260 eRc~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l 339 (588)
||+ ..|||.+|++|+|
T Consensus 72 e~~----------------------------------------------------------------~~~pf~~g~~F~i 87 (133)
T PF00337_consen 72 ERE----------------------------------------------------------------SPFPFQPGQPFEI 87 (133)
T ss_dssp EEE----------------------------------------------------------------SSTSSTTTSEEEE
T ss_pred eee----------------------------------------------------------------eeeeecCCceEEE
Confidence 997 3699999999999
Q ss_pred EEEEccceEEEEeCCeEEEEEeccccCCCcceeEEEEeCccccccccc
Q 007828 340 TIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFA 387 (588)
Q Consensus 340 tI~~g~egf~v~VnG~h~tsF~yR~~l~~~~v~~l~I~GDv~L~sV~a 387 (588)
+|.+..++|+|+|||+|+++|+|| ++++.|++|.|.||++|++|.+
T Consensus 88 ~I~~~~~~f~I~vng~~~~~F~~R--~~~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 88 RIRVEEDGFKIYVNGKHFCSFPHR--LPLSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EEEEESSEEEEEETTEEEEEEE-S--SCGGGEEEEEEEESEEEEEEEE
T ss_pred EEEEecCeeEEEECCeEEEEeeCc--CCHHHcCEEEEECCEEEEEEEC
Confidence 999999999999999999999999 5568999999999999999863
No 9
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=229.61 Aligned_cols=160 Identities=22% Similarity=0.341 Sum_probs=142.6
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhcCCC-----CCCCCCceEEEEeec-cCChhhhHHHHHHHhhcCCeEEEe-ecc
Q 007828 412 RKRLVMLIGVFSTGNNFERRMALRRSWMQYP-----AVRSGDLAVRFFIGL-HKNRQVNFELWKEAQAYGDIQIMP-FVD 484 (588)
Q Consensus 412 ~~~v~LlI~V~Sap~n~~RR~AIR~TW~~~~-----~v~~~~V~v~FvvG~-~~~~~~~~~L~~Eae~ygDII~ld-f~D 484 (588)
.+.++++|+|.|+++..+||+++|+|||... ......+.++|+||. +.......+|.+|.++|+|.+++| .+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 5689999999999999999999999999872 234688999999999 556788999999999999999999 999
Q ss_pred cccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhcCC-CCCeEEEEeeCCCCCccCCCCCCC-------C
Q 007828 485 YYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKEKP-SNGLLFGLMSYDSSPQRDKDSKWN-------G 556 (588)
Q Consensus 485 sY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~~~-~~~l~~G~v~~~~~P~Rd~~sKWy-------~ 556 (588)
.|.+|+.||+++|.++....+++|++|+|||+|||++.|...|.+.. ...+|+|++..+ +++..+++||| +
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg-~v~~~~~~kw~EpeWkfg~ 166 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSG-PVLTQPGGKWYEPEWKFGD 166 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCC-ccccCCCCcccChhhhcCc
Confidence 99999999999999999999999999999999999999999999833 367899999864 45566789998 2
Q ss_pred C--CCCCCccCceEEcCC
Q 007828 557 R--IPHTHHGPMVQVISS 572 (588)
Q Consensus 557 ~--YPpYc~G~gYILS~s 572 (588)
. |-+|+.|++|+||.|
T Consensus 167 ~g~YfrhA~G~~YvlS~d 184 (274)
T KOG2288|consen 167 NGNYFRHATGGGYVLSKD 184 (274)
T ss_pred ccccchhccCceEEeeHH
Confidence 3 999999999999984
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.92 E-value=6e-25 Score=205.72 Aligned_cols=135 Identities=30% Similarity=0.430 Sum_probs=122.2
Q ss_pred CeeEecCCCCCCCcEEEEEEEeCCC-CCceEEEcccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCcccc
Q 007828 181 RLIIEVPCGLVEDSSITLVGIPDGR-YGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKE 259 (588)
Q Consensus 181 ~~~~~iPcGL~~Gs~ItVvG~p~~~-~~~F~I~L~g~~~~~~~~~~iiLHfNpR~~~d~~~~~pvIv~Nt~~~~~~WG~E 259 (588)
.+...+++||.+|+.+++.|.+... +++|.+++..+....+ +.+|+|||||||++. .|||||+.+ |.||.|
T Consensus 5 p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg~e 76 (143)
T KOG3587|consen 5 PFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWGLE 76 (143)
T ss_pred ccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCC-CCcEEEEEeccCCCC------eEEEecccC-CccCch
Confidence 4677789999999999999999854 7899999998766665 677999999999988 699999998 999999
Q ss_pred eeeCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEE
Q 007828 260 ERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTT 339 (588)
Q Consensus 260 eRc~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l 339 (588)
||+ ..+||+.|++|.|
T Consensus 77 E~~----------------------------------------------------------------~~~PF~~g~~F~l 92 (143)
T KOG3587|consen 77 ERE----------------------------------------------------------------GGNPFQPGQPFDL 92 (143)
T ss_pred hhc----------------------------------------------------------------CCCCCCCCCeEEE
Confidence 998 4799999999999
Q ss_pred EEEEccceEEEEeCCeEEEEEeccccCCCcceeEEEEeCccccccccccC
Q 007828 340 TIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEG 389 (588)
Q Consensus 340 tI~~g~egf~v~VnG~h~tsF~yR~~l~~~~v~~l~I~GDv~L~sV~a~g 389 (588)
+|.++.+.|+|.|||.|+++|+|| +++..|..|.|.||++|.+|....
T Consensus 93 ~I~~~~~~~~I~VNg~~f~~y~HR--~p~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 93 TILVEEDKFQIFVNGVHFADYPHR--IPPSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred EEEEccCeEEEEECCEEEEeecCC--CCChheeEEEEeeeEEEEEEEEEc
Confidence 999999999999999999999999 566899999999999999988643
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.32 E-value=3.6e-12 Score=129.84 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCC-HHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHH
Q 007828 416 VMLIGVFSTGNN-FERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (588)
Q Consensus 416 ~LlI~V~Sap~n-~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTl 494 (588)
+++|+|+|++.+ ..|-.+|++||++... ...|+.....+..+.. + .-.+++.-+....+...+++.+
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~------~~~~ifsd~~d~~l~~----~--~~~~l~~~~~~~~~~~~~~~~~ 74 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN------KQTFIFSDAEDPSLPT----V--TGVHLVNPNCDAGHCRKTLSCK 74 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG------GGEEEEESS--HHHHH----H--HGGGEEE-------------HH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC------CceEEecCcccccccc----c--cccccccCCCcchhhHHHHHHH
Confidence 689999999965 5566999999999653 2245433333333322 2 3345666666666665566656
Q ss_pred HHHHHh-hccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeEEEEeeCCCCCccCCC---CCCC--CCCCCCC-ccCc
Q 007828 495 AICIFG-TKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKD---SKWN--GRIPHTH-HGPM 566 (588)
Q Consensus 495 a~l~wa-~~c~~akfvmK~DDDtfVnvd~Ll~~L~~-~~~~~l~~G~v~~~~~P~Rd~~---sKWy--~~YPpYc-~G~g 566 (588)
+.+.|. ...++++|++++|||+||++++|+.+|.. ++.++.|+|...... +..... ..+. ..| .|+ +|+|
T Consensus 75 ~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~~~~~~~~~~~~~-~f~~GGaG 152 (252)
T PF02434_consen 75 MAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIHRFNPNKSKDSGF-WFATGGAG 152 (252)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------EE-GGG-
T ss_pred HHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeeccccccccCcCce-EeeCCCee
Confidence 555553 33468899999999999999999999999 888999999986533 322200 0000 112 355 4589
Q ss_pred eEEcCChHHHHHHHHHH
Q 007828 567 VQVISSPGTLRNSLSKA 583 (588)
Q Consensus 567 YILS~s~davrrLl~aA 583 (588)
|+||+ .+++++...+
T Consensus 153 ~vlSr--~~~~k~~~~~ 167 (252)
T PF02434_consen 153 YVLSR--ALLKKMSPWA 167 (252)
T ss_dssp EEEEH--HHHHHHHHHH
T ss_pred HHHhH--HHHHHHhhhc
Confidence 99999 8998884433
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.96 E-value=2.5e-09 Score=114.57 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=108.2
Q ss_pred CCCeeEEEEEeCCCCCHHHH-HHHHHHhcCCCCCCCCCceEEEEe---eccCChhhhHHHHHHHhhcCCeEEEeeccccc
Q 007828 412 RKRLVMLIGVFSTGNNFERR-MALRRSWMQYPAVRSGDLAVRFFI---GLHKNRQVNFELWKEAQAYGDIQIMPFVDYYS 487 (588)
Q Consensus 412 ~~~v~LlI~V~Sap~n~~RR-~AIR~TW~~~~~v~~~~V~v~Fvv---G~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~ 487 (588)
..+..+++.|.+++.+..-| .++-+||++.+. +..|+- ..... .|. .|..+..|+|+
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~~s~~~~------------~f~-~v~~~~~~g~~ 148 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPTLSKDDS------------RFP-TVYYNLPDGYR 148 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC------cceecCccCCCCCC------------cCc-eeeccCCcchH
Confidence 57789999999888765555 699999998653 234444 22211 111 24678899999
Q ss_pred chhHHHHHHHHHhh-c-cCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeEEEEeeCCCCCccCCCCCCCCCCCCCCcc
Q 007828 488 LISLKTIAICIFGT-K-ILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWNGRIPHTHHG 564 (588)
Q Consensus 488 NLtlKTla~l~wa~-~-c~~akfvmK~DDDtfVnvd~Ll~~L~~-~~~~~l~~G~v~~~~~P~Rd~~sKWy~~YPpYc~G 564 (588)
++..||..++++.. + -.+++|++|+|||||+.++||..+|.. +++++.|+|+..... -... | --+|
T Consensus 149 ~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~---~~~~------y--~~g~ 217 (364)
T KOG2246|consen 149 SLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSY---FQNG------Y--SSGG 217 (364)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccc---cccc------c--ccCC
Confidence 99999999999984 3 458999999999999999999999999 899999999976421 1111 1 3356
Q ss_pred CceEEcCChHHHHHHHHHHhcc
Q 007828 565 PMVQVISSPGTLRNSLSKATRK 586 (588)
Q Consensus 565 ~gYILS~s~davrrLl~aA~r~ 586 (588)
+||++|+ +++++|..++...
T Consensus 218 ag~~ls~--aa~~~la~~l~~~ 237 (364)
T KOG2246|consen 218 AGYVLSF--AALRRLAERLLNN 237 (364)
T ss_pred CCcceeH--HHHHHHHHHHhcc
Confidence 8999998 8999988776543
No 13
>PLN03153 hypothetical protein; Provisional
Probab=98.04 E-value=2.3e-05 Score=86.90 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=83.9
Q ss_pred CCeeEEEEEeCCCCCH-HHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEee-ccc----c
Q 007828 413 KRLVMLIGVFSTGNNF-ERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPF-VDY----Y 486 (588)
Q Consensus 413 ~~v~LlI~V~Sap~n~-~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf-~Ds----Y 486 (588)
.--.++++|.++.+.. .|+..|+.+|..... + ..+|+.....+... -.++--... .|+ |
T Consensus 120 ~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-r----g~v~ld~~~~~~~~----------~~~~P~i~is~d~s~f~y 184 (537)
T PLN03153 120 SLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM-R----GHVWLEEQVSPEEG----------DDSLPPIMVSEDTSRFRY 184 (537)
T ss_pred ccccEEEEEEEchhhhhhhhhhhhhhcCcccc-e----eEEEecccCCCCCC----------cCCCCCEEeCCCcccccc
Confidence 3446788888777665 566888888887321 1 13344332221100 011211111 111 3
Q ss_pred cc---hhHHHHHH---HHHh--hccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeEEEEeeCCCCCccCCCCCCCCC
Q 007828 487 SL---ISLKTIAI---CIFG--TKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWNGR 557 (588)
Q Consensus 487 ~N---LtlKTla~---l~wa--~~c~~akfvmK~DDDtfVnvd~Ll~~L~~-~~~~~l~~G~v~~~~~P~Rd~~sKWy~~ 557 (588)
.| ... .+.+ ...+ ...++++|++++|||||+.+++|+..|.. +++++.|+|........... +.
T Consensus 185 ~~~~Gh~s-a~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~-----f~- 257 (537)
T PLN03153 185 TNPTGHPS-GLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSY-----FS- 257 (537)
T ss_pred cCCCCcHH-HHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccc-----cc-
Confidence 22 122 2322 2222 23689999999999999999999999999 88999999987654321110 00
Q ss_pred CCCCC-ccCceEEcCChHHHHHHHH
Q 007828 558 IPHTH-HGPMVQVISSPGTLRNSLS 581 (588)
Q Consensus 558 YPpYc-~G~gYILS~s~davrrLl~ 581 (588)
| .|+ +|+||+||+ ..++.|..
T Consensus 258 ~-~fA~GGAG~~LSr--PLae~L~~ 279 (537)
T PLN03153 258 H-NMAFGGGGIAISY--PLAEALSR 279 (537)
T ss_pred c-ccccCCceEEEcH--HHHHHHHH
Confidence 1 244 678999997 56665543
No 14
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=90.49 E-value=3.5 Score=39.89 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=51.8
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccch-------hH
Q 007828 419 IGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLI-------SL 491 (588)
Q Consensus 419 I~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NL-------tl 491 (588)
|.|.|-+...+||+.+.+..... .+.+.||-|..+......++.. .|..-..... .-+.+ .+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg~~l~~~~~~~---~~~~~~~~~~--~~~~lt~gEiGC~l 72 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDGRDLSEDELFR---RYDPELFKKR--YGRPLTPGEIGCAL 72 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecccccchHHHHH---Hhhhhhhhcc--ccccCCcceEeehh
Confidence 46778889999999999988764 4567888887664322211111 1111110000 00112 23
Q ss_pred HHHHHHHHhhccCCCcEEEEeCCceeeeHH
Q 007828 492 KTIAICIFGTKILPAKYIMKTDDDAFVRID 521 (588)
Q Consensus 492 KTla~l~wa~~c~~akfvmK~DDDtfVnvd 521 (588)
-.+..++-+.. .+.+|++-..||+.++.+
T Consensus 73 SH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 73 SHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred hHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 33444433321 257999999999999865
No 15
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=0.9 Score=51.15 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=85.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHH
Q 007828 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (588)
Q Consensus 414 ~v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKT 493 (588)
.=+|+++|++. ..---+|-+|-+.+- -++.||.+...-.. |.-++..+-.|..-..|+
T Consensus 25 RErl~~aVmte---~tlA~a~NrT~ahhv------prv~~F~~~~~i~~-------------~~a~~~~vs~~d~r~~~~ 82 (681)
T KOG3708|consen 25 RERLMAAVMTE---STLALAINRTLAHHV------PRVHLFADSSRIDN-------------DLAQLTNVSPYDLRGQKT 82 (681)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhc------ceeEEeeccccccc-------------cHhhccccCccccCcccc
Confidence 34677788872 266778888888743 36678887654321 233333444455555566
Q ss_pred HH-HHHHh--hccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeEEEEeeCCCCCccCCCCCCCCCCCCCCccCceEE
Q 007828 494 IA-ICIFG--TKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWNGRIPHTHHGPMVQV 569 (588)
Q Consensus 494 la-~l~wa--~~c~~akfvmK~DDDtfVnvd~Ll~~L~~-~~~~~l~~G~v~~~~~P~Rd~~sKWy~~YPpYc~G~gYIL 569 (588)
.. .+.+. ...-+++|++-+-||||||...|+.++-. .-..++|+|.-.- +.++ -.-.|.||++
T Consensus 83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~------~gs~-------rC~l~~G~LL 149 (681)
T KOG3708|consen 83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAE------DGSG-------RCRLDTGMLL 149 (681)
T ss_pred HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhh------CccC-------ccccccceee
Confidence 54 35553 34458999999999999999999999988 6778999993321 1111 1234689999
Q ss_pred cCChHHHHHHH
Q 007828 570 ISSPGTLRNSL 580 (588)
Q Consensus 570 S~s~davrrLl 580 (588)
|+ .++.+|-
T Consensus 150 S~--s~l~~lr 158 (681)
T KOG3708|consen 150 SQ--SLLHALR 158 (681)
T ss_pred cH--HHHHHHH
Confidence 98 5777664
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=87.95 E-value=12 Score=33.10 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=71.9
Q ss_pred EEEEEeCCCCCHHHH-HHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHHH
Q 007828 417 MLIGVFSTGNNFERR-MALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIA 495 (588)
Q Consensus 417 LlI~V~Sap~n~~RR-~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla 495 (588)
++|.+.-.+....+- ..+++. . .....+.++-..+ +....+.+.+-.+....+..+...++. .+ -.
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q--~-----~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~----~~ 68 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQ--T-----DPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-GF----SA 68 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHH--S-----GCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-HH----HH
T ss_pred EEEEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEEecccc-ccccccccccccccccccccccccccc-cc----cc
Confidence 344555555555554 347776 1 1234544444434 333333344433335556555555443 21 12
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEeeCCCCCc---cCCCC--C-CC----------CC
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQ---RDKDS--K-WN----------GR 557 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~~~~~P~---Rd~~s--K-Wy----------~~ 557 (588)
.+..+......+|++.+|||.++..+.|..++.. .......+|......... ..... . +. ..
T Consensus 69 ~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
T PF00535_consen 69 ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFW 148 (169)
T ss_dssp HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHST
T ss_pred cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcC
Confidence 2333444455669999999999998866666655 223445555543211111 11111 0 11 22
Q ss_pred CCCCCccCceEEcCChHHHHH
Q 007828 558 IPHTHHGPMVQVISSPGTLRN 578 (588)
Q Consensus 558 YPpYc~G~gYILS~s~davrr 578 (588)
--.|+.|++-++.+ ++.++
T Consensus 149 ~~~~~~~~~~~~rr--~~~~~ 167 (169)
T PF00535_consen 149 KISFFIGSCALFRR--SVFEE 167 (169)
T ss_dssp TSSEESSSCEEEEE--HHHHH
T ss_pred CcccccccEEEEEH--HHHHh
Confidence 34577778888887 56655
No 17
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=87.19 E-value=4.1 Score=37.28 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=67.8
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhH-------
Q 007828 419 IGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISL------- 491 (588)
Q Consensus 419 I~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtl------- 491 (588)
+.|.|-+...+||..+++..... .+...||-|..+.......+...... .-.......++.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------~~~~~~~~Avd~~~~~~~~~~~~~~~------~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------GLDFEFFDAVDGKDLSEEELAALYDA------LFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCCeEEEeccccccCCHHHHHHHhHH------HhhhhcCCCCChhhHHHHH
Confidence 45778888999999999966553 45677888876643322222222111 000001112222
Q ss_pred HHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeEEEEeeCCCCCccCCCCCCCCCCCCCCccCceEEcC
Q 007828 492 KTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSYDSSPQRDKDSKWNGRIPHTHHGPMVQVIS 571 (588)
Q Consensus 492 KTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~~~~~~l~~G~v~~~~~P~Rd~~sKWy~~YPpYc~G~gYILS~ 571 (588)
-.+..++-+.. .+.++++-..||+.+..+ ...||++|+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-----------------------------------------~~~~Y~vs~ 107 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-----------------------------------------GTAGYLVSR 107 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC-----------------------------------------CceEEEeCH
Confidence 22222222221 357899999999999887 236899998
Q ss_pred ChHHHHHHHHHHhc
Q 007828 572 SPGTLRNSLSKATR 585 (588)
Q Consensus 572 s~davrrLl~aA~r 585 (588)
.++++||+.+..
T Consensus 108 --~~A~~ll~~~~~ 119 (128)
T cd06532 108 --KGAKKLLAALEP 119 (128)
T ss_pred --HHHHHHHHhCCC
Confidence 899999998765
No 18
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.08 E-value=17 Score=34.62 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEeeCCCCCcc--C--CCCCCC-----------CCCC
Q 007828 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQR--D--KDSKWN-----------GRIP 559 (588)
Q Consensus 497 l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~~~~~P~R--d--~~sKWy-----------~~YP 559 (588)
+.++......+|++.+|+|+.+..+-|..++.. ......+.|..... .+.. . ..-.+. ..++
T Consensus 74 ~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (229)
T cd04192 74 LTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGLGKP 152 (229)
T ss_pred HHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 455545567899999999999998888877764 33345566655432 1100 0 000000 2356
Q ss_pred CCCccCceEEcCChHHHHHH
Q 007828 560 HTHHGPMVQVISSPGTLRNS 579 (588)
Q Consensus 560 pYc~G~gYILS~s~davrrL 579 (588)
..+.|++..+.+ ++.+++
T Consensus 153 ~~~~g~~~~~rr--~~~~~~ 170 (229)
T cd04192 153 FMCNGANMAYRK--EAFFEV 170 (229)
T ss_pred cccccceEEEEH--HHHHHh
Confidence 677788888876 555553
No 19
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=80.38 E-value=28 Score=30.57 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=25.2
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
.+.++....+.+|++.+|+|.++..+.|..++..
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~ 102 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVP 102 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHH
Confidence 3444544458999999999999988777766444
No 20
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=75.83 E-value=25 Score=32.74 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=65.4
Q ss_pred CceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHh
Q 007828 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (588)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L 527 (588)
.+.++.+-..+.+.. ...++....++..+..+....++. |. .++..+..+...+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~t-~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRT-LEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccH-HHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 345555544444332 223444444555565555543321 22 333444444567999999999999887777766
Q ss_pred hc-CCCCCeEEEEeeCCCCCccCCCCCCC------------CCCCCCCccCceEEcCChHHHHHH
Q 007828 528 KE-KPSNGLLFGLMSYDSSPQRDKDSKWN------------GRIPHTHHGPMVQVISSPGTLRNS 579 (588)
Q Consensus 528 ~~-~~~~~l~~G~v~~~~~P~Rd~~sKWy------------~~YPpYc~G~gYILS~s~davrrL 579 (588)
.. .......+|.......+ ...++. ...-+...|+++++++ ++++.+
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~i 162 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKES---WLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDR--KVVDAL 162 (181)
T ss_pred HHHhCCCcEEEEEecCCcch---HHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcH--HHHHHH
Confidence 65 33345667765432211 001111 2223466677788887 677665
No 21
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=75.64 E-value=37 Score=31.31 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=46.5
Q ss_pred hhHHHHHHHhhcCCeEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEe
Q 007828 463 VNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLM 540 (588)
Q Consensus 463 ~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v 540 (588)
....+++-...+..+..+....+.. | -..+..+..+...+|++.+|+|..+..+.|..++.. .......+|..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 116 (185)
T cd04179 42 TAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSR 116 (185)
T ss_pred hHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 3344555555666665555544432 1 133444444455699999999999999888888875 34456677765
Q ss_pred eC
Q 007828 541 SY 542 (588)
Q Consensus 541 ~~ 542 (588)
..
T Consensus 117 ~~ 118 (185)
T cd04179 117 FV 118 (185)
T ss_pred ec
Confidence 43
No 22
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=70.52 E-value=22 Score=34.21 Aligned_cols=119 Identities=17% Similarity=0.016 Sum_probs=56.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCe--EEEeecccccchhHHH
Q 007828 416 VMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDI--QIMPFVDYYSLISLKT 493 (588)
Q Consensus 416 ~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDI--I~ldf~DsY~NLtlKT 493 (588)
.+.|+|.+.-....-++.|+.--.+.. ..+.++++...+. ....+.+++-.+.|.+. ..+...... ....|.
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~----~~~~v~vvd~~~~-~~~~~~~~~~~~~~~~~~v~vi~~~~~~-g~~~k~ 75 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDY----PRLEVVVVDDGSD-DETAEILRALAARYPRVRVRVIRRPRNP-GPGGKA 75 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHH----HTEEEEEEEE-SS-S-GCTTHHHHHHTTGG-GEEEEE----H-HHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCC----CCeEEEEEECCCC-hHHHHHHHHHHHHcCCCceEEeecCCCC-CcchHH
Confidence 355666665555566666666665421 2355555553333 33334455555566553 222221111 112343
Q ss_pred HHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEee
Q 007828 494 IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (588)
Q Consensus 494 la~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~ 541 (588)
-+ +.++......+|++.+|||+.+..+-|..++.. .+.-..+.|.+.
T Consensus 76 ~a-~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~ 124 (228)
T PF13641_consen 76 RA-LNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVF 124 (228)
T ss_dssp HH-HHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEE
T ss_pred HH-HHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEe
Confidence 33 344433346999999999999998888776665 444455555553
No 23
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.99 E-value=66 Score=30.21 Aligned_cols=76 Identities=9% Similarity=-0.099 Sum_probs=41.9
Q ss_pred CceEEEEeeccCChhhhHHHHHHHhhcC-CeEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHH
Q 007828 448 DLAVRFFIGLHKNRQVNFELWKEAQAYG-DIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (588)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Eae~yg-DII~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~ 526 (588)
.+.++++-..+.+. ..+.+++-..++. .+.......+.. . ...+..+....+.+|++..|+|.+...+.|..+
T Consensus 27 ~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~G-~----~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNLG-V----ARNFESLLQAADGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCcc-H----HHHHHHHHHhCCCCEEEEECCCcccChhHHHHH
Confidence 45555555444433 2333444344443 233333332221 1 122333445568999999999999988888777
Q ss_pred hhc
Q 007828 527 LKE 529 (588)
Q Consensus 527 L~~ 529 (588)
+..
T Consensus 101 ~~~ 103 (214)
T cd04196 101 LKA 103 (214)
T ss_pred HHH
Confidence 764
No 24
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.39 E-value=74 Score=29.24 Aligned_cols=82 Identities=9% Similarity=-0.001 Sum_probs=47.9
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeEEEEeeCCCCCccCCCCC----CC---CCCCCCCccC
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSK----WN---GRIPHTHHGP 565 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~---~~~~~l~~G~v~~~~~P~Rd~~sK----Wy---~~YPpYc~G~ 565 (588)
.+..+....+.+|++.+|+|.++..+.+...+.. .+.-.+++|..............+ +. -....++.|+
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQ 145 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCc
Confidence 3455544557899999999999998888887733 444566777654211111110010 11 2234566677
Q ss_pred ceEEcCChHHHHHH
Q 007828 566 MVQVISSPGTLRNS 579 (588)
Q Consensus 566 gYILS~s~davrrL 579 (588)
+.++.+ ++.+.+
T Consensus 146 ~~~~~~--~~~~~~ 157 (202)
T cd06433 146 ATFFRR--SLFEKY 157 (202)
T ss_pred ceEEEH--HHHHHh
Confidence 778876 555554
No 25
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=69.36 E-value=51 Score=30.94 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=28.2
Q ss_pred CCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeEEEEee
Q 007828 504 LPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMS 541 (588)
Q Consensus 504 ~~akfvmK~DDDtfVnvd~Ll~~L~~-~~~~~l~~G~v~ 541 (588)
.+.+|++.+|.|+.+.++.|..++.. ........|...
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~ 118 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYN 118 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEe
Confidence 46899999999999998888777766 333345666554
No 26
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=67.31 E-value=1.2e+02 Score=28.91 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=43.8
Q ss_pred ceEEEEeeccCChhhhHHHHHHHhhcCC--eEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHH
Q 007828 449 LAVRFFIGLHKNRQVNFELWKEAQAYGD--IQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (588)
Q Consensus 449 V~v~FvvG~~~~~~~~~~L~~Eae~ygD--II~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~ 526 (588)
+.++++...+.+... +.+++-...|.. +......... ....|.- .+..+......+|++.+|+|+.+..+.|...
T Consensus 31 ~eiivVdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l 107 (196)
T cd02520 31 YEILFCVQDEDDPAI-PVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRRM 107 (196)
T ss_pred eEEEEEeCCCcchHH-HHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHHH
Confidence 666666665554332 334444455543 3222221111 1223432 2344545567899999999999988888777
Q ss_pred hhc
Q 007828 527 LKE 529 (588)
Q Consensus 527 L~~ 529 (588)
+..
T Consensus 108 ~~~ 110 (196)
T cd02520 108 VAP 110 (196)
T ss_pred HHH
Confidence 765
No 27
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=66.57 E-value=19 Score=34.77 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEeeCCCCCccCCCCCCC------------
Q 007828 490 SLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKWN------------ 555 (588)
Q Consensus 490 tlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~~~~~P~Rd~~sKWy------------ 555 (588)
..|.-.+........++++++..|+|+.|+.+-|...+.. .+.-.+..|.-. ..|.+ +-|-
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~--~~~~~---~~~~~l~~~~~~~~~~ 90 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPR--GVPAR---GFWSRLEAAFFNFLPG 90 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEeccc--ccCCc---CHHHHHHHHHHhHHHH
Confidence 3455544443222378999999999999999999888876 444444444222 11222 2221
Q ss_pred ----CCCCCCCccCceEEcCChHHHHHH
Q 007828 556 ----GRIPHTHHGPMVQVISSPGTLRNS 579 (588)
Q Consensus 556 ----~~YPpYc~G~gYILS~s~davrrL 579 (588)
-.-.++|.|+++++.+ ++++++
T Consensus 91 ~~~a~~~~~~~~G~~m~~rr--~~L~~~ 116 (175)
T PF13506_consen 91 VLQALGGAPFAWGGSMAFRR--EALEEI 116 (175)
T ss_pred HHHHhcCCCceecceeeeEH--HHHHHc
Confidence 1236899999999988 677665
No 28
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.11 E-value=1.2e+02 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=24.3
Q ss_pred hhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 500 GTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 500 a~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
+......+|++.+|||.++..+.+...+..
T Consensus 69 ~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 69 GIREAKGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred HHhhCCCCEEEEECCCcEECccHHHHHHHH
Confidence 333448999999999999998888887764
No 29
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=61.05 E-value=50 Score=31.66 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=25.3
Q ss_pred HHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 498 IFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 498 ~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
..+......+|++.+|+|+++..+.|..++..
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGY 108 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHH
Confidence 34433447899999999999999888887776
No 30
>PRK11204 N-glycosyltransferase; Provisional
Probab=57.34 E-value=1.6e+02 Score=31.71 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=57.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHH
Q 007828 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (588)
Q Consensus 415 v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTl 494 (588)
+.+-|+|.+--+...-++.|+.--.+ . -....+ +++....++...+.+++..+++..+..++..+ |.. |.
T Consensus 54 p~vsViIp~yne~~~i~~~l~sl~~q-~---yp~~ei-iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~G-ka- 123 (420)
T PRK11204 54 PGVSILVPCYNEGENVEETISHLLAL-R---YPNYEV-IAINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQG-KA- 123 (420)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHhC-C---CCCeEE-EEEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CCC-HH-
Confidence 45556666544433333333332222 1 113343 34443333344444555566666666555433 222 42
Q ss_pred HHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 495 AICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 495 a~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
..+..+....+.+|++..|+|+.+..+.|...++.
T Consensus 124 ~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~ 158 (420)
T PRK11204 124 NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEH 158 (420)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHH
Confidence 23455555568999999999999999988877765
No 31
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=55.81 E-value=2.4e+02 Score=30.36 Aligned_cols=108 Identities=11% Similarity=-0.053 Sum_probs=58.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCC--eEEEeecccccchhHH
Q 007828 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGD--IQIMPFVDYYSLISLK 492 (588)
Q Consensus 415 v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygD--II~ldf~DsY~NLtlK 492 (588)
+.+-|+|...-+...-.+.|+.-=.| .. ..+.++|+...+.+... +.+++=.+.|.+ |..+. ...-.....|
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q-~Y---p~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K 114 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQ-DY---PGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVI-DARRHGPNRK 114 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhc-CC---CCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEE-CCCCCCCChH
Confidence 34555555444444445566533333 22 23677776655544332 223333355666 33331 1111222346
Q ss_pred HHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 493 TIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 493 Tla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
.-+..+ +....+.+|++.+|+|+.+..+-|...+..
T Consensus 115 ~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~ 150 (373)
T TIGR03472 115 VSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAP 150 (373)
T ss_pred HHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHH
Confidence 544433 334468999999999999998888877765
No 32
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=52.43 E-value=1.1e+02 Score=28.80 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=31.0
Q ss_pred HHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeEEEEe
Q 007828 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLM 540 (588)
Q Consensus 497 l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~---~~~~~l~~G~v 540 (588)
+..+....+.+|++.+|+|.++..+.|...+.. .+.-.++.|.+
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 445544557899999999999998888877765 33334555544
No 33
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=50.67 E-value=2.2e+02 Score=27.12 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEee
Q 007828 498 IFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (588)
Q Consensus 498 ~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~ 541 (588)
..+......+|++.+|+|..+..+.|..++.. ........|...
T Consensus 71 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 116 (224)
T cd06442 71 IEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRY 116 (224)
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeee
Confidence 33333345699999999999998888887775 334456666543
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=48.53 E-value=2.7e+02 Score=27.17 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=60.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHH
Q 007828 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (588)
Q Consensus 414 ~v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKT 493 (588)
...+-|+|.+--+...-...|+.-..+.. ....+.++++...+.+. . .++.++.... .+......++ . -|.
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~--~~~~~eiivvdd~s~d~-t-~~~~~~~~~~-~v~~i~~~~~---~-g~~ 98 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDY--PRDRLEIIVVSDGSTDG-T-AEIAREYADK-GVKLLRFPER---R-GKA 98 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcC--CCCcEEEEEEECCCCcc-H-HHHHHHHhhC-cEEEEEcCCC---C-ChH
Confidence 34555566655544444566666665532 11124454444333332 2 2223332221 3444332222 1 132
Q ss_pred HHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEeeC
Q 007828 494 IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSY 542 (588)
Q Consensus 494 la~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~~ 542 (588)
..+..+......+|++.+|+|+++..+-|.+.+.. ++.-.+..|....
T Consensus 99 -~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 148 (251)
T cd06439 99 -AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVI 148 (251)
T ss_pred -HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEe
Confidence 23444444456799999999999997767766665 3334556666543
No 35
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=46.32 E-value=1.6e+02 Score=30.26 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=61.2
Q ss_pred EEEeCCCCCHH-HHHHHHHHhcCCC-CCCCCCceEEEEeeccCChhhhHHHHHH----HhhcCCeEEEeecccccchhHH
Q 007828 419 IGVFSTGNNFE-RRMALRRSWMQYP-AVRSGDLAVRFFIGLHKNRQVNFELWKE----AQAYGDIQIMPFVDYYSLISLK 492 (588)
Q Consensus 419 I~V~Sap~n~~-RR~AIR~TW~~~~-~v~~~~V~v~FvvG~~~~~~~~~~L~~E----ae~ygDII~ldf~DsY~NLtlK 492 (588)
|+|++--.... -.+.++..+.... ......+.+ |++..+.+++.......+ .+++..-+.+-+...-.|.-.|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 45555555554 5666776664110 000124666 888665554332211111 1223433333344444455567
Q ss_pred HHHHHHHhhcc-CCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 493 TIAICIFGTKI-LPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 493 Tla~l~wa~~c-~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
+-..-.+.... .+.+|++-.|.|+.+..+.|...+..
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~ 119 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRR 119 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 66554443322 57899999999999999999988875
No 36
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=46.13 E-value=49 Score=34.99 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCCCCCCCCcEEEEEEEccceEEEEe-----CCeEE-EEEeccccCCCcceeEEEEeCcccc
Q 007828 327 SNFPFVDGNPFTTTIWVGLDGFHMTV-----NGRHE-TSLAYREKLEPWSVTGVKVAGGVDL 382 (588)
Q Consensus 327 ~~fPF~~G~~F~ltI~~g~egf~v~V-----nG~h~-tsF~yR~~l~~~~v~~l~I~GDv~L 382 (588)
|+|-| .|.++|..+.+..+.+. |++.+ ++|+|++-|-..+|++++|.|=-.+
T Consensus 130 Wp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~tl 187 (305)
T KOG1594|consen 130 WPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLETL 187 (305)
T ss_pred CCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEeccccc
Confidence 55555 46777777755555432 78887 6899999998899999999994333
No 37
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=45.78 E-value=3.5e+02 Score=28.96 Aligned_cols=107 Identities=10% Similarity=-0.087 Sum_probs=65.5
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHH
Q 007828 415 LVMLIGVFSTGNNF-ERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (588)
Q Consensus 415 v~LlI~V~Sap~n~-~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKT 493 (588)
+.+-|+|.+--++. --.+.++..-.+.- ....+..+...+. ++..+.+.+-..++++.+.+... ..-...-
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dy----p~~evivv~d~~~-d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK 125 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDY----PRYEVIVVDDGST-DETYEILEELGAEYGPNFRVIYP---EKKNGGK 125 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCC----CCceEEEECCCCC-hhHHHHHHHHHhhcCcceEEEec---cccCccc
Confidence 66777777777665 44444554444421 1245555554333 34445566666666534443311 1122222
Q ss_pred HHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 494 IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 494 la~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
...+.++....+.++++..|.|+.+..|.|.+.+..
T Consensus 126 ~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~ 161 (439)
T COG1215 126 AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSP 161 (439)
T ss_pred hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhh
Confidence 456677766667999999999999999999998887
No 38
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=45.19 E-value=40 Score=31.85 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=41.5
Q ss_pred EEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEeeCCCCCccCCCCCCC-----------------CCCCCCCccCceE
Q 007828 508 YIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKWN-----------------GRIPHTHHGPMVQ 568 (588)
Q Consensus 508 fvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~~~~~P~Rd~~sKWy-----------------~~YPpYc~G~gYI 568 (588)
||+-+|+|+.+..+-+.+.+.. ++.-...-|.+... +..+.-.++. -..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 6899999999999888877665 23333344444421 1111001111 2346788999999
Q ss_pred EcCChHHHHHH
Q 007828 569 VISSPGTLRNS 579 (588)
Q Consensus 569 LS~s~davrrL 579 (588)
+.+ ++++++
T Consensus 79 ~r~--~~l~~v 87 (193)
T PF13632_consen 79 FRR--EALREV 87 (193)
T ss_pred eeH--HHHHHh
Confidence 987 676654
No 39
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=44.87 E-value=1.6e+02 Score=27.76 Aligned_cols=33 Identities=24% Similarity=0.057 Sum_probs=24.9
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
+++++. ....+|++..|||..+..+-+...+..
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 345554 457899999999999998777666554
No 40
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=44.12 E-value=3e+02 Score=26.42 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=43.4
Q ss_pred CceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHh
Q 007828 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (588)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L 527 (588)
...+.++...+.+. ....+ .+...+..+.+..- +. .-|.- .+..+......+|++.+|+|+.+..+.|...+
T Consensus 28 ~~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~~-~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVITV-PH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChH-HHHHH-HhhccCCcEEEEec-CC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHHH
Confidence 34555554444332 22223 34555666655532 21 12333 23334344589999999999999999988877
Q ss_pred hc
Q 007828 528 KE 529 (588)
Q Consensus 528 ~~ 529 (588)
..
T Consensus 100 ~~ 101 (235)
T cd06434 100 KP 101 (235)
T ss_pred Hh
Confidence 66
No 41
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=43.92 E-value=3e+02 Score=26.40 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=47.8
Q ss_pred CCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHH
Q 007828 447 GDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (588)
Q Consensus 447 ~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~ 526 (588)
..+.+..+-+.+.+ +....++...+.+..+....-.. .. +. .++..+....+.+|++.+|||..+..+-|...
T Consensus 30 ~~~evivvd~~s~d-~~~~~~~~~~~~~~~v~~i~~~~----~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~ 102 (249)
T cd02525 30 DLIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPK----RI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILEL 102 (249)
T ss_pred CccEEEEEeCCCCc-cHHHHHHHHHhcCCeEEEEeCCC----CC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHH
Confidence 34555555544443 33344444444443344433221 11 11 24555555558999999999999988877777
Q ss_pred hhc--CCCCCeEEEEe
Q 007828 527 LKE--KPSNGLLFGLM 540 (588)
Q Consensus 527 L~~--~~~~~l~~G~v 540 (588)
+.. .+......|..
T Consensus 103 ~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 103 VEALKRTGADNVGGPM 118 (249)
T ss_pred HHHHhcCCCCEEecce
Confidence 755 33334444544
No 42
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=43.10 E-value=4.9e+02 Score=28.71 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=59.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHH
Q 007828 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (588)
Q Consensus 415 v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTl 494 (588)
+.+-|+|.+--+...-++.|+.- .+... ..+.+.++-..+. +...+.+++..+++..+.......+ .. |.
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q~y---p~~eIivVdDgs~-D~t~~~~~~~~~~~~~v~vv~~~~n---~G-ka- 144 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQTY---TNIEVIAINDGSS-DDTAQVLDALLAEDPRLRVIHLAHN---QG-KA- 144 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcCCC---CCeEEEEEECCCC-ccHHHHHHHHHHhCCCEEEEEeCCC---CC-HH-
Confidence 45556666555444444444432 22211 2355444443333 3344445555566766655543322 11 32
Q ss_pred HHHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 495 AICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 495 a~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
..++.+....+.+|++.+|+|+.+..+.+...+..
T Consensus 145 ~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~ 179 (444)
T PRK14583 145 IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAP 179 (444)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHH
Confidence 34566655568999999999999999988887765
No 43
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=42.58 E-value=2.8e+02 Score=29.41 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=64.3
Q ss_pred CceEEEEeeccCChhhhHHHHHHHhhcCC-eEEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHH
Q 007828 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGD-IQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (588)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Eae~ygD-II~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~ 526 (588)
.+.++++-..+.+.+. +.+++-++.+++ ++......++- |. .++..+..+.+.+|++.+|+|...+++.+..+
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNYG----QH-SAIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCCC----HH-HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 4666677665555433 223333344444 44333333331 11 12233333457899999999999999999888
Q ss_pred hhc-CCCCCeEEEEeeC-CCCCccCCCCCCC---------CCCCCCCccCceEEcCChHHHHHHH
Q 007828 527 LKE-KPSNGLLFGLMSY-DSSPQRDKDSKWN---------GRIPHTHHGPMVQVISSPGTLRNSL 580 (588)
Q Consensus 527 L~~-~~~~~l~~G~v~~-~~~P~Rd~~sKWy---------~~YPpYc~G~gYILS~s~davrrLl 580 (588)
++. ...-+...|.... ...+.|.-.++.+ ..++.++.| .-++++ ++++.+.
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~g-fr~~~r--~~~~~l~ 173 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCM-LRAYRR--HIVDAML 173 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcC-eEEEcH--HHHHHHH
Confidence 877 2222444443321 1122222222222 334444443 237777 7888764
No 44
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=38.99 E-value=3.5e+02 Score=26.50 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
.+.++....+.+|++.+|+|+.+..+.|.+.+..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~ 108 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAA 108 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Confidence 4556655567899999999999999999888776
No 45
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=37.99 E-value=5.5e+02 Score=27.72 Aligned_cols=110 Identities=17% Similarity=0.064 Sum_probs=55.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHH-HhhcC---CeEEEeecccccchh
Q 007828 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKE-AQAYG---DIQIMPFVDYYSLIS 490 (588)
Q Consensus 415 v~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~E-ae~yg---DII~ldf~DsY~NLt 490 (588)
+.+-|+|..--+...-.+.|+.--.|.- ...+.+.++-..+.+.+ .++.++ .+.+. .+..+...+.-.+-.
T Consensus 40 p~VSVIIpa~Ne~~~L~~~L~sL~~q~y---p~~~eIIVVDd~StD~T--~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~ 114 (384)
T TIGR03469 40 PAVVAVVPARNEADVIGECVTSLLEQDY---PGKLHVILVDDHSTDGT--ADIARAAARAYGRGDRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCEEEEEecCCcHhHHHHHHHHHHhCCC---CCceEEEEEeCCCCCcH--HHHHHHHHHhcCCCCcEEEecCCCCCCCCc
Confidence 3455555544333333344444333321 12356665555554433 223333 23333 454444322212223
Q ss_pred HHHHH---HHHHhh-ccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 491 LKTIA---ICIFGT-KILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 491 lKTla---~l~wa~-~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
-|.-+ +++.+. .+++.+|++.+|+|+.+..+.+...+..
T Consensus 115 Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~ 157 (384)
T TIGR03469 115 GKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVAR 157 (384)
T ss_pred chHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHH
Confidence 44333 334442 3445899999999999999888887765
No 46
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=37.11 E-value=1.5e+02 Score=28.73 Aligned_cols=34 Identities=18% Similarity=0.001 Sum_probs=26.0
Q ss_pred HHHHhhcc--CCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 496 ICIFGTKI--LPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 496 ~l~wa~~c--~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
.+.++... .+++|++.+|+|+.+..+.|..++..
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPI 108 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHH
Confidence 35555332 24799999999999999998888766
No 47
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=31.13 E-value=5.2e+02 Score=25.44 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeEEEEee
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~--~~~~~l~~G~v~ 541 (588)
++..+....+.+|++.+|+|..++++.|..++.. ...-.+.+|...
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~ 131 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRY 131 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccc
Confidence 3444444457899999999999999988887765 333456777543
No 48
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=26.93 E-value=5.2e+02 Score=24.01 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeEEEEe
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLM 540 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~---~~~~~l~~G~v 540 (588)
++..+......+|++.+|+|..+..+.|...++. .+.-.+++|..
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 121 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDE 121 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccH
Confidence 3455544567899999999999998877777664 34445555543
No 49
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=26.15 E-value=5.7e+02 Score=24.27 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred CceEEEEeeccCChhhhHHHHHHHhhcCCe-EEEeecccccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHH
Q 007828 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDI-QIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (588)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Eae~ygDI-I~ldf~DsY~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~ 526 (588)
.+.+..+-+.+.+. ..+.+++..+.++.. ..+....+. - |. .++..+......+|++.+|+|.....+.+..+
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n~---G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKNR---G-KG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccCC---C-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 45555554444433 333445555566654 233332221 1 11 23333433445699999999999999988888
Q ss_pred hhc--CCCCCeEEEEee
Q 007828 527 LKE--KPSNGLLFGLMS 541 (588)
Q Consensus 527 L~~--~~~~~l~~G~v~ 541 (588)
+.. .......+|...
T Consensus 104 ~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 104 EEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHhccCCcEEEEEee
Confidence 875 334466777654
No 50
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=25.21 E-value=5.2e+02 Score=23.51 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHhhccCCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeEEEEe
Q 007828 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLM 540 (588)
Q Consensus 497 l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~~~~~~l~~G~v 540 (588)
+..+......+|++..|+|..+..+-|...++.......++|..
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~~~v~g~~ 114 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPGVFLSGSR 114 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCCcEEecce
Confidence 34555556789999999999998887777666543334444543
No 51
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=25.18 E-value=9.5e+02 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeEEEEeeC
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSY 542 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~---~~~~~l~~G~v~~ 542 (588)
++.++....+.+|++.+|+|..+..+.|.+.+.. ++.-....|.+..
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~ 171 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILT 171 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEec
Confidence 4566655567899999999999999988887765 3322334465543
No 52
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=24.59 E-value=8e+02 Score=25.41 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=53.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCceEEEEeeccCChhhhHHHHHHHhhcCCeEEEeecccccchhHHHHH
Q 007828 416 VMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIA 495 (588)
Q Consensus 416 ~LlI~V~Sap~n~~RR~AIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Eae~ygDII~ldf~DsY~NLtlKTla 495 (588)
.+-++|.|-..-....+.+...=.+.. ......++-........+.+.... +.++..+...++.---.- .-.
T Consensus 4 ~i~~iiv~yn~~~~l~~~l~~l~~~~~-----~~~~iv~vDn~s~d~~~~~~~~~~--~~~v~~i~~~~NlG~agg-~n~ 75 (305)
T COG1216 4 KISIIIVTYNRGEDLVECLASLAAQTY-----PDDVIVVVDNGSTDGSLEALKARF--FPNVRLIENGENLGFAGG-FNR 75 (305)
T ss_pred ceEEEEEecCCHHHHHHHHHHHhcCCC-----CCcEEEEccCCCCCCCHHHHHhhc--CCcEEEEEcCCCccchhh-hhH
Confidence 344444444444445555555555432 122222444333333222233322 678877766555320000 002
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
+..++..- ..+|++-.++|+.+..+.|.++++.
T Consensus 76 g~~~a~~~-~~~~~l~LN~D~~~~~~~l~~ll~~ 108 (305)
T COG1216 76 GIKYALAK-GDDYVLLLNPDTVVEPDLLEELLKA 108 (305)
T ss_pred HHHHHhcC-CCcEEEEEcCCeeeChhHHHHHHHH
Confidence 33343221 1129999999999999999988887
No 53
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=23.96 E-value=5.5e+02 Score=29.50 Aligned_cols=70 Identities=11% Similarity=-0.024 Sum_probs=41.4
Q ss_pred CCcEEEEeCCceeeeHHHHHHHhhcCCCCCeEEEEeeCCCCCccCCCCCC----C-CC----------------CCCCCc
Q 007828 505 PAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSYDSSPQRDKDSKW----N-GR----------------IPHTHH 563 (588)
Q Consensus 505 ~akfvmK~DDDtfVnvd~Ll~~L~~~~~~~l~~G~v~~~~~P~Rd~~sKW----y-~~----------------YPpYc~ 563 (588)
++++++-.|-|..+.++.|..+....+..++.-..+.... + ..+.| | .. -+..+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~~~~VQ~pv~~~~---~-~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNYLLPRHDFVQLPVFSLP---R-DWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHhhcCCCCEEecceeccC---C-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 5799999999999999998765333332232221122111 1 11222 1 11 133578
Q ss_pred cCceEEcCChHHHHHHH
Q 007828 564 GPMVQVISSPGTLRNSL 580 (588)
Q Consensus 564 G~gYILS~s~davrrLl 580 (588)
|.|+.+.+ ++++++.
T Consensus 234 Gtg~afRR--~aLe~l~ 248 (504)
T PRK14716 234 GVGTAFSR--RALERLA 248 (504)
T ss_pred CeeEEeEH--HHHHHHH
Confidence 99999998 7888764
No 54
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=23.25 E-value=4.5e+02 Score=22.05 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=30.4
Q ss_pred cCCeEEEeecccccchhHHHHHHHHH-hhccCCCcEEEEeCCceeeeHHH
Q 007828 474 YGDIQIMPFVDYYSLISLKTIAICIF-GTKILPAKYIMKTDDDAFVRIDE 522 (588)
Q Consensus 474 ygDII~ldf~DsY~NLtlKTla~l~w-a~~c~~akfvmK~DDDtfVnvd~ 522 (588)
+.++-+..+.+.|..-... ...+.. ......++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 3556666666666543333 223332 23345899999999999987665
No 55
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.03 E-value=2.1e+02 Score=30.59 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCeEEEeeccc--ccchhHHHHHHHHHhhccCCCcEEEEeCCceeeeHHHHHHHh
Q 007828 465 FELWKEAQAYGDIQIMPFVDY--YSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (588)
Q Consensus 465 ~~L~~Eae~ygDII~ldf~Ds--Y~NLtlKTla~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L 527 (588)
..|..=...+.-.+.+++.+. +..-+.--.++..|+.+-++..+++.+|-|+|.-.|++.+.|
T Consensus 52 ~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l 116 (346)
T COG4092 52 RLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKML 116 (346)
T ss_pred HHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHH
Confidence 445555555556667776443 333333344566777777789999999999999999999988
No 56
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=22.44 E-value=8.4e+02 Score=24.88 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=25.9
Q ss_pred HHHHhhccCCCcEEEEeCCceeeeHHHHHHHhhc
Q 007828 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (588)
Q Consensus 496 ~l~wa~~c~~akfvmK~DDDtfVnvd~Ll~~L~~ 529 (588)
+...+......+|++.+|+|+.+..+-|..++..
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~ 107 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLAR 107 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHH
Confidence 4555555567899999999999987777776654
Done!