Query 007829
Match_columns 588
No_of_seqs 503 out of 3412
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0341 DEAD-box protein abstr 100.0 1E-138 2E-143 1003.7 34.6 581 2-583 18-610 (610)
2 KOG0331 ATP-dependent RNA heli 100.0 3.3E-80 7.1E-85 639.3 37.4 411 112-531 30-477 (519)
3 KOG0333 U5 snRNP-like RNA heli 100.0 7E-80 1.5E-84 616.7 33.4 419 105-531 208-654 (673)
4 KOG0339 ATP-dependent RNA heli 100.0 2.8E-77 6E-82 594.8 36.2 451 97-557 177-632 (731)
5 PTZ00110 helicase; Provisional 100.0 2.9E-72 6.4E-77 610.6 47.9 417 105-531 91-513 (545)
6 KOG0336 ATP-dependent RNA heli 100.0 4.8E-74 1E-78 558.4 29.6 422 102-533 170-603 (629)
7 KOG0330 ATP-dependent RNA heli 100.0 7E-73 1.5E-77 548.8 30.4 361 141-516 59-421 (476)
8 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-69 2.6E-74 588.6 46.9 415 106-529 83-502 (518)
9 KOG0335 ATP-dependent RNA heli 100.0 1.2E-70 2.6E-75 558.5 30.8 392 132-530 63-472 (482)
10 KOG0338 ATP-dependent RNA heli 100.0 1.9E-70 4.1E-75 546.8 30.3 360 142-513 180-544 (691)
11 KOG0334 RNA helicase [RNA proc 100.0 1.6E-69 3.4E-74 585.5 37.1 427 96-532 317-750 (997)
12 COG0513 SrmB Superfamily II DN 100.0 3.1E-68 6.8E-73 573.6 40.7 364 143-517 29-396 (513)
13 KOG0328 Predicted ATP-dependen 100.0 4E-67 8.6E-72 488.2 27.8 375 139-528 23-399 (400)
14 PRK04837 ATP-dependent RNA hel 100.0 1.6E-63 3.4E-68 530.9 41.6 363 142-512 7-372 (423)
15 KOG0342 ATP-dependent RNA heli 100.0 8.7E-65 1.9E-69 506.5 29.1 362 142-513 81-448 (543)
16 KOG0345 ATP-dependent RNA heli 100.0 5.8E-63 1.2E-67 490.0 34.9 351 143-501 4-364 (567)
17 PRK10590 ATP-dependent RNA hel 100.0 2.4E-62 5.3E-67 525.2 41.8 363 144-515 2-365 (456)
18 PRK11776 ATP-dependent RNA hel 100.0 9E-62 2E-66 522.9 41.6 357 143-514 4-361 (460)
19 PRK04537 ATP-dependent RNA hel 100.0 1.2E-61 2.6E-66 529.1 42.5 364 143-514 9-376 (572)
20 PRK11634 ATP-dependent RNA hel 100.0 1.1E-61 2.4E-66 532.1 41.1 355 142-510 5-360 (629)
21 KOG0340 ATP-dependent RNA heli 100.0 8.6E-63 1.9E-67 473.1 27.5 346 142-501 6-361 (442)
22 KOG0343 RNA Helicase [RNA proc 100.0 1.3E-62 2.9E-67 494.6 28.9 360 142-512 68-433 (758)
23 KOG0326 ATP-dependent RNA heli 100.0 5.8E-64 1.3E-68 474.3 17.0 366 143-524 85-451 (459)
24 PRK11192 ATP-dependent RNA hel 100.0 4.1E-60 8.9E-65 506.8 43.0 360 144-514 2-364 (434)
25 KOG0348 ATP-dependent RNA heli 100.0 9.4E-61 2E-65 480.0 28.4 363 142-512 135-564 (708)
26 PRK01297 ATP-dependent RNA hel 100.0 1E-58 2.3E-63 500.4 42.2 367 141-515 85-455 (475)
27 KOG0346 RNA helicase [RNA proc 100.0 1.9E-59 4.1E-64 461.0 29.0 368 143-517 19-425 (569)
28 PTZ00424 helicase 45; Provisio 100.0 7.9E-57 1.7E-61 477.7 39.6 358 142-514 27-386 (401)
29 KOG0347 RNA helicase [RNA proc 100.0 4.7E-59 1E-63 469.0 19.6 371 140-517 178-585 (731)
30 KOG0327 Translation initiation 100.0 1.5E-56 3.2E-61 436.8 23.1 368 143-526 26-394 (397)
31 KOG0344 ATP-dependent RNA heli 100.0 4.9E-56 1.1E-60 454.0 26.2 401 122-530 111-523 (593)
32 KOG0332 ATP-dependent RNA heli 100.0 1.4E-55 3.1E-60 425.7 26.5 372 140-528 87-471 (477)
33 KOG0337 ATP-dependent RNA heli 100.0 5.2E-56 1.1E-60 434.8 20.0 360 142-515 20-381 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 8.9E-53 1.9E-57 470.4 40.2 343 138-501 7-386 (742)
35 KOG4284 DEAD box protein [Tran 100.0 3.7E-54 8.1E-59 439.8 23.8 354 136-503 18-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 2.6E-51 5.7E-56 455.0 40.7 331 144-501 436-787 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 4.6E-50 9.9E-55 431.6 37.0 312 162-501 8-333 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 5.4E-51 1.2E-55 407.2 21.9 348 152-512 146-551 (620)
39 PRK11057 ATP-dependent DNA hel 100.0 2.9E-48 6.3E-53 428.2 38.6 322 150-501 9-343 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 6.3E-48 1.4E-52 426.7 38.6 316 156-501 3-331 (591)
41 PRK13767 ATP-dependent helicas 100.0 1.1E-46 2.3E-51 429.7 37.8 347 150-501 18-398 (876)
42 PRK02362 ski2-like helicase; P 100.0 7.1E-47 1.5E-51 427.3 33.6 336 144-501 2-397 (737)
43 PRK00254 ski2-like helicase; P 100.0 9.3E-46 2E-50 417.2 35.7 336 144-501 2-388 (720)
44 COG0514 RecQ Superfamily II DN 100.0 6.1E-46 1.3E-50 391.6 31.4 322 155-502 6-338 (590)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.7E-45 5.9E-50 402.2 34.2 324 155-500 5-390 (844)
46 KOG0329 ATP-dependent RNA heli 100.0 1.6E-47 3.5E-52 352.1 13.4 335 142-524 41-378 (387)
47 TIGR00580 mfd transcription-re 100.0 6.6E-44 1.4E-48 402.4 40.6 321 150-501 436-770 (926)
48 PRK10917 ATP-dependent DNA hel 100.0 8.9E-43 1.9E-47 388.6 42.5 372 152-562 248-641 (681)
49 PRK10689 transcription-repair 100.0 1.2E-42 2.7E-47 400.1 41.7 316 155-501 591-919 (1147)
50 PRK01172 ski2-like helicase; P 100.0 4.6E-43 1E-47 393.7 34.9 333 144-501 2-378 (674)
51 TIGR00643 recG ATP-dependent D 100.0 2.8E-42 6.1E-47 382.2 40.3 372 153-563 224-619 (630)
52 COG1201 Lhr Lhr-like helicases 100.0 3.2E-42 6.9E-47 376.0 32.9 340 149-501 7-362 (814)
53 PRK09401 reverse gyrase; Revie 100.0 6.2E-42 1.4E-46 395.1 33.5 304 154-487 69-430 (1176)
54 PRK09751 putative ATP-dependen 100.0 1E-40 2.3E-45 385.6 35.4 309 185-497 1-381 (1490)
55 PRK14701 reverse gyrase; Provi 100.0 3.9E-40 8.5E-45 387.4 34.2 317 152-494 66-449 (1638)
56 PHA02653 RNA helicase NPH-II; 100.0 1.9E-39 4.1E-44 354.7 31.6 311 167-502 166-515 (675)
57 PRK12898 secA preprotein trans 100.0 2.4E-39 5.1E-44 348.4 30.0 315 162-502 101-587 (656)
58 KOG0349 Putative DEAD-box RNA 100.0 2.3E-40 5E-45 325.0 19.0 279 220-501 287-615 (725)
59 PHA02558 uvsW UvsW helicase; P 100.0 3.1E-38 6.7E-43 341.6 33.2 305 164-498 113-449 (501)
60 TIGR01587 cas3_core CRISPR-ass 100.0 1E-38 2.2E-43 333.5 27.8 296 182-501 1-336 (358)
61 COG1111 MPH1 ERCC4-like helica 100.0 1.7E-37 3.6E-42 313.5 32.4 320 163-501 13-481 (542)
62 TIGR01054 rgy reverse gyrase. 100.0 5.7E-38 1.2E-42 362.9 33.4 293 152-473 65-409 (1171)
63 COG1202 Superfamily II helicas 100.0 1.5E-38 3.3E-43 322.4 24.6 335 144-501 195-553 (830)
64 PRK09200 preprotein translocas 100.0 4.8E-38 1E-42 345.3 29.7 316 162-502 76-542 (790)
65 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-37 2.4E-42 348.7 32.9 302 170-501 7-336 (819)
66 KOG0352 ATP-dependent DNA heli 100.0 9.3E-39 2E-43 313.5 20.8 324 153-502 6-363 (641)
67 PRK11664 ATP-dependent RNA hel 100.0 3.4E-37 7.4E-42 345.6 31.4 302 170-501 10-339 (812)
68 COG1204 Superfamily II helicas 100.0 3.6E-37 7.9E-42 341.1 29.7 334 146-501 12-408 (766)
69 COG1205 Distinct helicase fami 100.0 1.4E-36 3.1E-41 341.0 33.7 343 151-508 56-429 (851)
70 KOG0351 ATP-dependent DNA heli 100.0 1.5E-37 3.2E-42 346.1 25.5 323 152-501 250-592 (941)
71 TIGR00963 secA preprotein tran 100.0 6.8E-37 1.5E-41 330.8 29.0 315 162-502 54-518 (745)
72 KOG0353 ATP-dependent DNA heli 100.0 4.2E-37 9E-42 297.7 23.8 331 145-501 73-467 (695)
73 TIGR03714 secA2 accessory Sec 100.0 1.3E-36 2.9E-41 330.7 29.7 314 165-502 70-538 (762)
74 PRK13766 Hef nuclease; Provisi 100.0 5.3E-35 1.2E-39 334.4 36.8 321 163-502 13-480 (773)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 8.6E-35 1.9E-39 301.4 31.1 293 169-486 1-357 (357)
76 COG1200 RecG RecG-like helicas 100.0 2.3E-34 5E-39 302.8 31.9 370 151-562 248-643 (677)
77 KOG0354 DEAD-box like helicase 100.0 1.1E-33 2.4E-38 301.8 27.5 318 163-500 60-528 (746)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 8.3E-34 1.8E-38 305.5 23.5 326 162-501 107-491 (1230)
79 TIGR00603 rad25 DNA repair hel 100.0 5.3E-33 1.2E-37 302.7 26.8 318 164-517 254-624 (732)
80 PRK05580 primosome assembly pr 100.0 4.2E-31 9E-36 293.8 37.4 309 164-501 143-549 (679)
81 PRK11131 ATP-dependent RNA hel 100.0 4.1E-32 8.8E-37 309.4 29.3 296 170-501 79-411 (1294)
82 PRK04914 ATP-dependent helicas 100.0 1.7E-31 3.8E-36 300.5 32.6 332 164-516 151-617 (956)
83 cd00268 DEADc DEAD-box helicas 100.0 1.4E-30 3.1E-35 249.9 24.6 202 145-358 1-202 (203)
84 PRK13104 secA preprotein trans 100.0 3.1E-30 6.6E-35 282.9 28.3 315 164-503 81-589 (896)
85 PRK09694 helicase Cas3; Provis 100.0 3.7E-29 8E-34 280.2 36.6 310 163-490 284-664 (878)
86 KOG0951 RNA helicase BRR2, DEA 100.0 4.2E-30 9.2E-35 279.9 25.0 384 149-556 295-750 (1674)
87 COG1197 Mfd Transcription-repa 100.0 5.5E-29 1.2E-33 275.9 34.0 363 150-551 579-959 (1139)
88 PRK12904 preprotein translocas 100.0 1.2E-29 2.6E-34 278.1 27.7 315 164-503 80-575 (830)
89 TIGR01967 DEAH_box_HrpA ATP-de 100.0 9.7E-30 2.1E-34 291.1 27.3 297 172-501 74-404 (1283)
90 COG1061 SSL2 DNA or RNA helica 100.0 2.9E-29 6.3E-34 266.5 27.3 290 164-487 35-375 (442)
91 PRK12899 secA preprotein trans 100.0 4.9E-29 1.1E-33 272.8 29.1 148 146-312 65-228 (970)
92 TIGR00595 priA primosomal prot 100.0 7.7E-29 1.7E-33 266.3 30.3 287 184-499 1-379 (505)
93 PRK12906 secA preprotein trans 100.0 5.8E-29 1.3E-33 271.7 26.8 314 164-502 79-554 (796)
94 KOG0947 Cytoplasmic exosomal R 100.0 5E-29 1.1E-33 265.8 23.7 308 165-501 297-723 (1248)
95 KOG0948 Nuclear exosomal RNA h 100.0 8.3E-29 1.8E-33 258.2 17.8 316 164-507 128-545 (1041)
96 PLN03142 Probable chromatin-re 100.0 4.2E-27 9.2E-32 266.0 29.1 315 165-501 169-599 (1033)
97 COG4581 Superfamily II RNA hel 100.0 5.1E-27 1.1E-31 260.4 25.6 316 159-501 114-537 (1041)
98 PRK13107 preprotein translocas 100.0 4.7E-27 1E-31 257.1 24.4 314 165-503 82-593 (908)
99 PRK11448 hsdR type I restricti 99.9 5.2E-26 1.1E-30 261.9 29.3 304 165-489 413-801 (1123)
100 KOG0950 DNA polymerase theta/e 99.9 8E-27 1.7E-31 251.1 20.9 332 149-502 207-612 (1008)
101 COG4098 comFA Superfamily II D 99.9 5.2E-25 1.1E-29 212.2 30.1 297 164-498 96-413 (441)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 4.6E-26 1E-30 211.8 19.2 165 167-346 1-168 (169)
103 KOG0385 Chromatin remodeling c 99.9 9.2E-25 2E-29 229.2 23.7 315 165-501 167-599 (971)
104 PRK12900 secA preprotein trans 99.9 1.4E-23 3.1E-28 230.6 21.8 125 376-502 577-712 (1025)
105 TIGR00631 uvrb excinuclease AB 99.9 2.2E-21 4.8E-26 213.6 34.1 109 392-501 440-553 (655)
106 COG1203 CRISPR-associated heli 99.9 1.6E-22 3.4E-27 227.5 25.4 319 166-501 196-550 (733)
107 KOG0384 Chromodomain-helicase 99.9 4.3E-23 9.4E-28 226.4 15.8 368 106-502 314-812 (1373)
108 KOG0387 Transcription-coupled 99.9 2E-21 4.4E-26 205.3 22.4 319 148-501 196-658 (923)
109 PRK05298 excinuclease ABC subu 99.9 2.2E-20 4.8E-25 207.3 30.8 134 391-525 443-589 (652)
110 COG1110 Reverse gyrase [DNA re 99.9 3.2E-21 7E-26 209.0 23.0 289 153-473 70-417 (1187)
111 PRK12326 preprotein translocas 99.9 1.1E-20 2.3E-25 202.8 26.8 313 164-502 77-548 (764)
112 TIGR01407 dinG_rel DnaQ family 99.9 8.4E-20 1.8E-24 209.6 31.9 332 151-501 232-814 (850)
113 COG1198 PriA Primosomal protei 99.9 1.6E-19 3.4E-24 197.2 30.5 311 163-501 196-603 (730)
114 COG1643 HrpA HrpA-like helicas 99.9 6.4E-20 1.4E-24 203.1 27.3 306 169-501 54-387 (845)
115 TIGR00348 hsdR type I site-spe 99.9 1.3E-19 2.8E-24 201.9 28.8 296 166-488 239-634 (667)
116 PRK13103 secA preprotein trans 99.9 6.1E-20 1.3E-24 201.7 24.4 314 164-503 81-593 (913)
117 COG4096 HsdR Type I site-speci 99.9 3.4E-20 7.5E-25 198.4 21.1 293 164-488 164-525 (875)
118 smart00487 DEXDc DEAD-like hel 99.8 1.6E-19 3.5E-24 171.4 21.0 187 161-362 4-192 (201)
119 KOG0389 SNF2 family DNA-depend 99.8 3.1E-19 6.7E-24 188.6 22.9 319 165-504 399-891 (941)
120 KOG0949 Predicted helicase, DE 99.8 3.4E-19 7.4E-24 191.5 23.1 160 165-342 511-673 (1330)
121 KOG2340 Uncharacterized conser 99.8 1E-19 2.2E-24 184.4 17.6 337 164-501 215-668 (698)
122 PRK12903 secA preprotein trans 99.8 8.5E-19 1.9E-23 190.7 25.3 314 162-502 76-540 (925)
123 KOG4150 Predicted ATP-dependen 99.8 2.1E-19 4.6E-24 183.0 19.0 328 156-501 277-640 (1034)
124 COG0556 UvrB Helicase subunit 99.8 5.7E-18 1.2E-22 172.6 26.2 163 331-501 387-557 (663)
125 KOG0390 DNA repair protein, SN 99.8 3.2E-18 6.9E-23 185.9 25.9 321 165-501 238-707 (776)
126 PF06862 DUF1253: Protein of u 99.8 3.2E-18 7E-23 176.9 23.7 283 218-501 36-415 (442)
127 KOG0922 DEAH-box RNA helicase 99.8 5.5E-18 1.2E-22 177.8 24.6 303 167-502 53-391 (674)
128 KOG0392 SNF2 family DNA-depend 99.8 3.1E-18 6.7E-23 187.8 23.5 333 165-515 975-1468(1549)
129 CHL00122 secA preprotein trans 99.8 1.1E-17 2.4E-22 183.2 25.6 274 162-461 74-491 (870)
130 KOG1000 Chromatin remodeling p 99.8 4.5E-18 9.7E-23 171.3 17.9 313 163-501 196-603 (689)
131 PRK07246 bifunctional ATP-depe 99.8 2.9E-16 6.3E-21 178.1 33.2 316 162-501 243-783 (820)
132 PRK12902 secA preprotein trans 99.8 1.1E-16 2.4E-21 175.0 26.1 273 165-461 85-506 (939)
133 KOG0923 mRNA splicing factor A 99.8 3.4E-17 7.5E-22 170.1 18.8 304 165-500 265-605 (902)
134 KOG0920 ATP-dependent RNA heli 99.8 9.9E-17 2.2E-21 177.2 23.4 311 167-501 175-544 (924)
135 cd00079 HELICc Helicase superf 99.8 1.6E-17 3.6E-22 147.0 14.0 117 381-497 12-131 (131)
136 KOG0924 mRNA splicing factor A 99.7 1.4E-16 3.1E-21 165.7 22.3 302 167-501 358-697 (1042)
137 PF00271 Helicase_C: Helicase 99.7 6E-18 1.3E-22 135.7 8.9 78 412-489 1-78 (78)
138 KOG0386 Chromatin remodeling c 99.7 1.8E-17 4E-22 179.3 15.0 316 164-500 393-835 (1157)
139 KOG0953 Mitochondrial RNA heli 99.7 6.9E-17 1.5E-21 165.1 15.5 277 180-515 191-486 (700)
140 KOG0926 DEAH-box RNA helicase 99.7 7.8E-16 1.7E-20 162.8 23.7 305 171-501 262-704 (1172)
141 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.1E-14 2.4E-19 158.4 33.3 126 382-509 458-624 (636)
142 KOG1123 RNA polymerase II tran 99.7 4.8E-17 1E-21 164.0 13.2 305 164-503 301-655 (776)
143 COG4889 Predicted helicase [Ge 99.7 9.9E-18 2.1E-22 178.2 8.4 334 144-498 141-583 (1518)
144 PRK08074 bifunctional ATP-depe 99.7 3.6E-15 7.9E-20 172.2 29.7 114 388-501 746-893 (928)
145 cd00046 DEXDc DEAD-like helica 99.7 1.2E-15 2.7E-20 136.1 16.0 144 181-340 1-144 (144)
146 KOG0388 SNF2 family DNA-depend 99.7 4.6E-15 1E-19 155.0 18.4 120 382-501 1032-1154(1185)
147 PF04851 ResIII: Type III rest 99.6 2.4E-15 5.1E-20 141.4 12.4 158 165-341 3-183 (184)
148 KOG0951 RNA helicase BRR2, DEA 99.6 1.6E-14 3.6E-19 159.3 19.7 306 164-501 1142-1494(1674)
149 KOG0391 SNF2 family DNA-depend 99.6 1.9E-14 4E-19 157.1 19.8 119 383-501 1265-1387(1958)
150 PRK12901 secA preprotein trans 99.6 3.4E-14 7.3E-19 157.3 21.0 125 375-502 606-742 (1112)
151 smart00490 HELICc helicase sup 99.6 4.4E-15 9.6E-20 119.8 9.4 81 409-489 2-82 (82)
152 COG1199 DinG Rad3-related DNA 99.6 3.7E-13 8.1E-18 151.7 27.3 115 383-500 468-616 (654)
153 KOG0925 mRNA splicing factor A 99.6 2.2E-13 4.8E-18 137.5 21.3 324 142-501 24-387 (699)
154 KOG1002 Nucleotide excision re 99.6 3.5E-13 7.7E-18 136.1 22.2 109 394-502 638-750 (791)
155 PRK11747 dinG ATP-dependent DN 99.5 7E-12 1.5E-16 140.7 32.6 105 393-501 533-674 (697)
156 TIGR00604 rad3 DNA repair heli 99.5 2.1E-12 4.5E-17 146.0 28.5 134 387-530 515-693 (705)
157 TIGR02562 cas3_yersinia CRISPR 99.5 6.9E-13 1.5E-17 147.7 22.7 316 156-490 399-881 (1110)
158 PRK14873 primosome assembly pr 99.5 4.7E-12 1E-16 139.7 26.4 272 188-501 168-539 (665)
159 KOG4439 RNA polymerase II tran 99.5 1.7E-12 3.6E-17 136.5 18.8 114 391-504 743-861 (901)
160 COG0553 HepA Superfamily II DN 99.4 7.4E-12 1.6E-16 146.4 20.0 112 391-502 706-823 (866)
161 KOG1015 Transcription regulato 99.4 5.5E-11 1.2E-15 128.4 24.0 106 392-497 1140-1271(1567)
162 PF02399 Herpes_ori_bp: Origin 99.4 5E-11 1.1E-15 130.0 20.9 286 183-501 52-388 (824)
163 COG0653 SecA Preprotein transl 99.3 1.4E-10 3.1E-15 127.3 20.2 312 165-501 80-545 (822)
164 PF07652 Flavi_DEAD: Flaviviru 99.2 3E-11 6.5E-16 105.3 8.1 136 180-345 4-141 (148)
165 PF00176 SNF2_N: SNF2 family N 99.2 8.4E-11 1.8E-15 119.6 12.1 157 169-341 1-173 (299)
166 smart00488 DEXDc2 DEAD-like he 99.1 2E-09 4.4E-14 108.3 13.8 73 165-242 8-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.1 2E-09 4.4E-14 108.3 13.8 73 165-242 8-84 (289)
168 COG0610 Type I site-specific r 99.0 2.7E-08 5.9E-13 115.0 22.2 294 181-499 274-651 (962)
169 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.3E-08 2.8E-13 99.8 15.8 128 164-312 76-210 (266)
170 PRK15483 type III restriction- 98.7 2.8E-07 6.2E-12 103.9 15.5 149 181-342 60-240 (986)
171 KOG1016 Predicted DNA helicase 98.6 2.5E-06 5.4E-11 91.4 19.1 105 394-498 719-844 (1387)
172 KOG0952 DNA/RNA helicase MER3/ 98.5 1.2E-08 2.6E-13 112.6 -0.8 132 165-314 927-1061(1230)
173 TIGR00596 rad1 DNA repair prot 98.5 2.2E-06 4.7E-11 96.8 16.0 66 276-341 8-73 (814)
174 COG3587 Restriction endonuclea 98.5 1.1E-05 2.3E-10 88.2 20.2 46 443-488 482-527 (985)
175 KOG1001 Helicase-like transcri 98.4 5.1E-07 1.1E-11 99.7 8.4 102 395-496 540-643 (674)
176 KOG0921 Dosage compensation co 98.4 1.9E-06 4.2E-11 93.8 11.0 301 173-498 386-771 (1282)
177 PF02562 PhoH: PhoH-like prote 98.3 2.5E-06 5.3E-11 80.6 8.5 146 163-338 2-154 (205)
178 PF13307 Helicase_C_2: Helicas 98.3 1.3E-06 2.8E-11 80.7 6.2 113 387-501 2-150 (167)
179 PF13086 AAA_11: AAA domain; P 98.2 1.3E-05 2.9E-10 78.0 12.3 74 165-241 1-75 (236)
180 PF13604 AAA_30: AAA domain; P 98.1 1.2E-05 2.5E-10 76.4 9.8 123 165-339 1-130 (196)
181 PF13872 AAA_34: P-loop contai 98.1 2.4E-05 5.1E-10 77.3 11.8 172 147-346 25-226 (303)
182 KOG1802 RNA helicase nonsense 98.0 8.8E-05 1.9E-09 78.9 14.7 77 156-242 401-477 (935)
183 PF12340 DUF3638: Protein of u 98.0 7.1E-05 1.5E-09 71.3 11.3 155 143-313 3-186 (229)
184 PRK10536 hypothetical protein; 97.9 5.5E-05 1.2E-09 73.5 9.1 144 162-335 56-208 (262)
185 PF09848 DUF2075: Uncharacteri 97.8 8.5E-05 1.8E-09 77.4 10.0 107 183-326 4-117 (352)
186 KOG1803 DNA helicase [Replicat 97.7 9.2E-05 2E-09 78.5 8.6 66 164-240 184-250 (649)
187 TIGR00376 DNA helicase, putati 97.7 0.00032 7E-09 78.4 12.8 67 164-241 156-223 (637)
188 KOG1132 Helicase of the DEAD s 97.5 0.00052 1.1E-08 75.8 10.9 78 394-472 561-655 (945)
189 TIGR01448 recD_rel helicase, p 97.5 0.00091 2E-08 75.9 13.2 126 164-339 322-452 (720)
190 PF13245 AAA_19: Part of AAA d 97.5 0.00057 1.2E-08 53.9 8.0 60 173-239 2-62 (76)
191 PRK13889 conjugal transfer rel 97.5 0.0019 4.1E-08 74.9 15.2 126 161-339 343-470 (988)
192 PRK10875 recD exonuclease V su 97.5 0.001 2.2E-08 73.6 12.5 142 167-339 154-301 (615)
193 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0029 6.4E-08 72.1 15.7 121 165-337 352-474 (744)
194 TIGR01447 recD exodeoxyribonuc 97.4 0.0021 4.6E-08 71.0 13.7 143 167-339 147-295 (586)
195 smart00492 HELICc3 helicase su 97.4 0.0012 2.6E-08 58.9 9.4 66 407-472 4-78 (141)
196 PF14617 CMS1: U3-containing 9 97.3 0.00065 1.4E-08 66.2 7.1 87 217-310 124-212 (252)
197 PRK08181 transposase; Validate 97.3 0.0017 3.7E-08 64.5 10.1 48 297-344 165-213 (269)
198 COG1875 NYN ribonuclease and A 97.2 0.0027 5.9E-08 63.9 10.9 142 162-337 225-385 (436)
199 PRK04296 thymidine kinase; Pro 97.2 0.001 2.2E-08 62.8 7.8 53 281-340 63-115 (190)
200 KOG1805 DNA replication helica 97.2 0.0021 4.5E-08 71.8 10.5 156 139-313 647-810 (1100)
201 smart00491 HELICc2 helicase su 97.2 0.0018 3.9E-08 57.9 8.4 94 407-500 4-138 (142)
202 KOG0383 Predicted helicase [Ge 97.2 2.3E-05 5.1E-10 85.8 -4.5 69 388-457 625-696 (696)
203 PRK06526 transposase; Provisio 97.1 0.00078 1.7E-08 66.5 5.9 26 176-201 94-119 (254)
204 PF13871 Helicase_C_4: Helicas 97.1 0.0021 4.4E-08 63.5 8.5 81 435-515 52-143 (278)
205 PF13401 AAA_22: AAA domain; P 97.0 0.0025 5.4E-08 55.9 7.9 22 179-200 3-24 (131)
206 PRK13826 Dtr system oriT relax 97.0 0.012 2.6E-07 68.8 15.2 137 150-339 367-505 (1102)
207 PF05970 PIF1: PIF1-like helic 97.0 0.0014 3E-08 68.5 6.6 59 166-235 2-66 (364)
208 PRK12723 flagellar biosynthesi 97.0 0.024 5.1E-07 59.3 15.4 131 180-351 174-309 (388)
209 PF00580 UvrD-helicase: UvrD/R 96.9 0.0023 5E-08 65.2 7.9 123 166-309 1-125 (315)
210 PRK14974 cell division protein 96.8 0.017 3.7E-07 59.2 13.1 54 298-351 221-275 (336)
211 TIGR02760 TraI_TIGR conjugativ 96.8 0.15 3.3E-06 64.2 23.3 235 165-444 429-686 (1960)
212 PHA02533 17 large terminase pr 96.6 0.017 3.7E-07 63.1 11.3 150 165-340 59-210 (534)
213 KOG1133 Helicase of the DEAD s 96.5 0.038 8.3E-07 60.0 13.1 106 393-501 628-780 (821)
214 cd00009 AAA The AAA+ (ATPases 96.5 0.026 5.7E-07 49.7 10.6 18 180-197 19-36 (151)
215 KOG0298 DEAD box-containing he 96.5 0.007 1.5E-07 69.5 8.0 157 179-347 373-557 (1394)
216 PRK06921 hypothetical protein; 96.5 0.044 9.6E-07 54.5 12.9 19 179-197 116-134 (266)
217 PRK05642 DNA replication initi 96.4 0.019 4.2E-07 56.0 9.7 45 298-342 96-141 (234)
218 PRK11889 flhF flagellar biosyn 96.4 0.066 1.4E-06 55.6 13.5 72 280-352 302-375 (436)
219 KOG1131 RNA polymerase II tran 96.3 0.046 1E-06 57.4 12.2 80 394-473 530-623 (755)
220 PRK08727 hypothetical protein; 96.3 0.03 6.4E-07 54.7 10.3 47 298-344 92-140 (233)
221 PRK12377 putative replication 96.2 0.025 5.4E-07 55.5 9.2 48 297-344 161-210 (248)
222 COG1198 PriA Primosomal protei 96.2 0.049 1.1E-06 61.1 12.4 84 383-467 234-318 (730)
223 smart00382 AAA ATPases associa 96.2 0.013 2.7E-07 51.4 6.5 19 180-198 2-20 (148)
224 PRK06893 DNA replication initi 96.1 0.02 4.4E-07 55.7 8.2 47 297-343 89-137 (229)
225 PRK07952 DNA replication prote 96.1 0.098 2.1E-06 51.2 12.7 49 297-345 160-210 (244)
226 PRK06835 DNA replication prote 96.1 0.074 1.6E-06 54.6 12.2 49 297-345 244-294 (329)
227 PRK08116 hypothetical protein; 96.1 0.067 1.4E-06 53.4 11.6 48 297-345 176-226 (268)
228 KOG0989 Replication factor C, 96.0 0.037 8E-07 54.7 8.9 61 294-355 124-187 (346)
229 COG3421 Uncharacterized protei 95.9 0.0065 1.4E-07 64.6 3.9 143 185-343 2-168 (812)
230 PF00448 SRP54: SRP54-type pro 95.9 0.13 2.7E-06 48.8 12.2 52 298-349 82-134 (196)
231 PRK08084 DNA replication initi 95.9 0.052 1.1E-06 53.1 9.8 43 300-342 98-142 (235)
232 PRK12727 flagellar biosynthesi 95.8 0.79 1.7E-05 49.6 19.0 22 179-200 349-370 (559)
233 cd01124 KaiC KaiC is a circadi 95.8 0.039 8.4E-07 51.6 8.4 48 183-242 2-49 (187)
234 PF00308 Bac_DnaA: Bacterial d 95.8 0.058 1.2E-06 52.1 9.6 48 297-344 95-144 (219)
235 COG1484 DnaC DNA replication p 95.8 0.071 1.5E-06 52.7 10.2 49 179-239 104-152 (254)
236 PF03354 Terminase_1: Phage Te 95.7 0.038 8.2E-07 60.1 8.9 71 168-245 1-80 (477)
237 PRK00149 dnaA chromosomal repl 95.7 0.083 1.8E-06 57.0 11.4 48 298-345 210-259 (450)
238 cd01120 RecA-like_NTPases RecA 95.7 0.084 1.8E-06 47.7 9.9 46 297-342 83-138 (165)
239 PRK14087 dnaA chromosomal repl 95.6 0.082 1.8E-06 56.8 10.6 48 297-344 204-253 (450)
240 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.087 1.9E-06 50.9 9.9 42 300-341 91-133 (226)
241 PHA03333 putative ATPase subun 95.5 0.37 8E-06 53.3 15.0 154 165-340 169-332 (752)
242 PRK14712 conjugal transfer nic 95.5 0.13 2.8E-06 62.6 12.6 64 165-235 835-900 (1623)
243 PRK09183 transposase/IS protei 95.4 0.084 1.8E-06 52.4 9.2 24 177-200 99-122 (259)
244 PRK12422 chromosomal replicati 95.3 0.1 2.2E-06 55.9 10.2 50 298-347 201-252 (445)
245 TIGR00362 DnaA chromosomal rep 95.3 0.13 2.8E-06 54.7 10.8 46 299-344 199-246 (405)
246 PRK06731 flhF flagellar biosyn 95.2 0.31 6.6E-06 48.5 12.6 130 179-352 74-209 (270)
247 PF05127 Helicase_RecD: Helica 95.2 0.015 3.2E-07 53.7 3.0 124 184-341 1-124 (177)
248 TIGR01547 phage_term_2 phage t 95.2 0.06 1.3E-06 57.1 8.1 136 182-343 3-143 (396)
249 PRK05703 flhF flagellar biosyn 95.2 0.27 5.9E-06 52.3 12.8 130 179-351 220-354 (424)
250 PRK14722 flhF flagellar biosyn 95.1 0.065 1.4E-06 55.7 7.8 25 179-203 136-160 (374)
251 PRK14723 flhF flagellar biosyn 95.1 0.33 7.2E-06 54.9 13.8 38 425-462 459-500 (767)
252 PRK11054 helD DNA helicase IV; 95.1 0.091 2E-06 59.4 9.4 79 157-244 188-266 (684)
253 cd01122 GP4d_helicase GP4d_hel 95.0 0.12 2.7E-06 51.5 9.4 55 177-242 27-81 (271)
254 PRK08903 DnaA regulatory inact 95.0 0.15 3.2E-06 49.5 9.7 43 299-342 90-133 (227)
255 PRK14086 dnaA chromosomal repl 95.0 0.1 2.2E-06 57.4 9.2 49 297-345 375-425 (617)
256 PRK05580 primosome assembly pr 95.0 0.12 2.5E-06 58.7 10.1 76 393-469 189-265 (679)
257 COG2805 PilT Tfp pilus assembl 95.0 0.028 6.2E-07 55.4 4.4 54 136-208 99-152 (353)
258 COG0593 DnaA ATPase involved i 95.0 0.12 2.7E-06 54.0 9.2 47 299-345 175-223 (408)
259 COG2256 MGS1 ATPase related to 94.9 0.091 2E-06 54.0 7.9 20 181-200 49-68 (436)
260 TIGR00064 ftsY signal recognit 94.9 0.42 9.1E-06 47.7 12.6 54 298-351 153-213 (272)
261 COG1444 Predicted P-loop ATPas 94.9 0.27 5.8E-06 55.2 12.0 152 155-341 204-357 (758)
262 TIGR00595 priA primosomal prot 94.8 0.12 2.7E-06 56.4 9.3 76 392-468 23-99 (505)
263 PRK10919 ATP-dependent DNA hel 94.8 0.071 1.5E-06 60.5 7.8 71 165-244 2-72 (672)
264 COG1419 FlhF Flagellar GTP-bin 94.8 0.18 3.9E-06 52.2 9.9 132 179-352 202-336 (407)
265 PRK13709 conjugal transfer nic 94.8 0.27 5.9E-06 60.6 12.9 65 164-235 966-1032(1747)
266 PF05621 TniB: Bacterial TniB 94.8 0.15 3.3E-06 50.9 9.0 56 181-241 62-118 (302)
267 PRK14088 dnaA chromosomal repl 94.8 0.34 7.3E-06 52.0 12.3 49 299-347 194-244 (440)
268 PRK08939 primosomal protein Dn 94.7 0.22 4.7E-06 50.7 10.0 50 297-346 215-267 (306)
269 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.26 5.7E-06 44.7 9.5 54 296-349 92-147 (159)
270 PRK13833 conjugal transfer pro 94.6 0.11 2.4E-06 52.9 7.8 65 156-231 121-186 (323)
271 TIGR02785 addA_Gpos recombinat 94.6 0.16 3.4E-06 61.7 10.3 124 165-310 1-126 (1232)
272 PRK10917 ATP-dependent DNA hel 94.6 0.094 2E-06 59.6 7.9 75 393-467 309-388 (681)
273 PHA03368 DNA packaging termina 94.6 0.2 4.3E-06 55.1 9.8 139 177-342 251-392 (738)
274 PRK12724 flagellar biosynthesi 94.5 0.58 1.3E-05 49.3 12.8 54 298-351 298-356 (432)
275 PRK00411 cdc6 cell division co 94.5 0.15 3.2E-06 54.0 8.7 18 180-197 55-72 (394)
276 TIGR01074 rep ATP-dependent DN 94.5 0.21 4.6E-06 56.8 10.5 70 166-244 2-71 (664)
277 PRK13894 conjugal transfer ATP 94.4 0.098 2.1E-06 53.5 6.9 66 155-231 124-190 (319)
278 PRK14873 primosome assembly pr 94.4 0.24 5.3E-06 55.6 10.6 84 384-468 178-263 (665)
279 PRK11331 5-methylcytosine-spec 94.2 0.13 2.8E-06 54.5 7.4 34 165-198 179-212 (459)
280 TIGR00708 cobA cob(I)alamin ad 94.2 0.62 1.3E-05 42.9 11.0 53 297-349 95-149 (173)
281 TIGR01075 uvrD DNA helicase II 94.2 0.11 2.4E-06 59.5 7.5 72 164-244 3-74 (715)
282 PRK06995 flhF flagellar biosyn 94.1 0.28 6E-06 52.8 9.7 22 180-201 256-277 (484)
283 PRK12402 replication factor C 94.0 0.36 7.8E-06 49.8 10.4 41 298-340 124-164 (337)
284 PRK05707 DNA polymerase III su 94.0 0.15 3.2E-06 52.4 7.3 35 165-199 3-41 (328)
285 PF05876 Terminase_GpA: Phage 94.0 0.082 1.8E-06 58.4 5.7 128 164-313 15-148 (557)
286 PRK07764 DNA polymerase III su 94.0 0.13 2.8E-06 59.2 7.4 44 298-343 119-162 (824)
287 TIGR02782 TrbB_P P-type conjug 93.9 0.19 4E-06 51.0 7.8 66 155-231 108-174 (299)
288 PF13173 AAA_14: AAA domain 93.9 0.44 9.6E-06 41.5 9.2 36 299-337 61-96 (128)
289 PF05496 RuvB_N: Holliday junc 93.9 0.2 4.3E-06 47.9 7.3 19 181-199 51-69 (233)
290 TIGR02760 TraI_TIGR conjugativ 93.9 0.34 7.4E-06 61.2 11.4 63 164-235 1018-1084(1960)
291 PRK11773 uvrD DNA-dependent he 93.9 0.15 3.2E-06 58.5 7.7 72 164-244 8-79 (721)
292 PRK12726 flagellar biosynthesi 93.8 0.83 1.8E-05 47.4 12.1 23 179-201 205-227 (407)
293 PF06745 KaiC: KaiC; InterPro 93.8 0.33 7.1E-06 47.0 9.1 139 179-340 18-160 (226)
294 TIGR01425 SRP54_euk signal rec 93.8 0.95 2.1E-05 48.0 12.9 53 299-351 182-235 (429)
295 PRK05986 cob(I)alamin adenolsy 93.8 0.47 1E-05 44.4 9.4 140 178-349 20-167 (191)
296 cd00984 DnaB_C DnaB helicase C 93.8 0.69 1.5E-05 45.2 11.4 38 179-226 12-49 (242)
297 PLN03025 replication factor C 93.7 0.48 1E-05 48.6 10.5 43 298-342 98-140 (319)
298 PF00004 AAA: ATPase family as 93.7 0.63 1.4E-05 40.3 9.8 17 299-315 58-74 (132)
299 PRK08533 flagellar accessory p 93.6 0.68 1.5E-05 45.0 10.9 52 179-242 23-74 (230)
300 PHA00729 NTP-binding motif con 93.6 0.64 1.4E-05 44.7 10.2 74 277-350 60-138 (226)
301 PRK08769 DNA polymerase III su 93.6 0.43 9.4E-06 48.7 9.7 36 164-199 3-45 (319)
302 PRK00771 signal recognition pa 93.6 1 2.2E-05 48.1 12.7 52 300-351 176-228 (437)
303 TIGR00643 recG ATP-dependent D 93.5 0.18 3.9E-06 56.9 7.5 75 393-467 283-362 (630)
304 COG1435 Tdk Thymidine kinase [ 93.5 0.79 1.7E-05 42.7 10.2 90 182-312 6-95 (201)
305 PRK13342 recombination factor 93.4 0.52 1.1E-05 50.2 10.5 38 299-341 92-129 (413)
306 TIGR03499 FlhF flagellar biosy 93.4 0.19 4.1E-06 50.6 6.8 21 179-199 193-213 (282)
307 TIGR02881 spore_V_K stage V sp 93.4 0.68 1.5E-05 45.9 10.7 21 180-200 42-62 (261)
308 PTZ00112 origin recognition co 93.4 1.2 2.6E-05 50.9 13.2 27 298-325 868-894 (1164)
309 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.9 2E-05 44.0 11.3 52 179-242 19-70 (229)
310 TIGR03877 thermo_KaiC_1 KaiC d 93.4 0.45 9.7E-06 46.5 9.1 53 179-243 20-72 (237)
311 PHA02544 44 clamp loader, smal 93.3 0.4 8.7E-06 49.0 9.2 39 299-337 100-138 (316)
312 PRK14721 flhF flagellar biosyn 93.2 1.2 2.7E-05 47.1 12.5 21 179-199 190-210 (420)
313 TIGR03015 pepcterm_ATPase puta 93.2 1.3 2.7E-05 44.0 12.3 34 165-198 23-61 (269)
314 TIGR03600 phage_DnaB phage rep 93.2 1 2.3E-05 48.1 12.4 50 179-239 193-242 (421)
315 COG1219 ClpX ATP-dependent pro 93.2 0.098 2.1E-06 52.0 4.0 22 178-199 95-116 (408)
316 PTZ00293 thymidine kinase; Pro 93.1 0.68 1.5E-05 44.0 9.5 38 180-228 4-41 (211)
317 PRK06645 DNA polymerase III su 93.1 0.48 1E-05 51.5 9.6 21 181-201 44-64 (507)
318 PRK14956 DNA polymerase III su 93.1 0.19 4E-06 53.9 6.2 19 182-200 42-60 (484)
319 PRK10867 signal recognition pa 93.0 1.4 3.1E-05 46.9 12.9 20 182-201 102-121 (433)
320 TIGR02525 plasmid_TraJ plasmid 93.0 0.25 5.4E-06 51.5 7.1 49 139-206 126-174 (372)
321 TIGR00580 mfd transcription-re 93.0 0.49 1.1E-05 55.3 10.0 75 393-467 499-578 (926)
322 KOG0991 Replication factor C, 92.9 0.3 6.6E-06 46.5 6.7 45 290-335 102-148 (333)
323 TIGR00959 ffh signal recogniti 92.9 1.8 3.8E-05 46.2 13.3 21 182-202 101-121 (428)
324 COG3972 Superfamily I DNA and 92.8 0.38 8.2E-06 50.6 7.8 151 152-313 150-309 (660)
325 PRK14949 DNA polymerase III su 92.8 0.2 4.3E-06 57.3 6.3 45 298-344 118-162 (944)
326 PF01695 IstB_IS21: IstB-like 92.8 0.19 4.1E-06 46.8 5.3 46 177-234 44-89 (178)
327 PRK14964 DNA polymerase III su 92.8 0.35 7.5E-06 52.3 7.9 46 297-344 114-159 (491)
328 PRK04195 replication factor C 92.8 0.64 1.4E-05 50.7 10.1 18 180-197 39-56 (482)
329 CHL00181 cbbX CbbX; Provisiona 92.8 1.2 2.6E-05 44.9 11.4 21 180-200 59-79 (287)
330 PF03796 DnaB_C: DnaB-like hel 92.8 1.1 2.4E-05 44.3 11.1 128 180-327 19-162 (259)
331 cd03115 SRP The signal recogni 92.6 2 4.4E-05 39.5 11.9 19 183-201 3-21 (173)
332 PRK06904 replicative DNA helic 92.5 2.5 5.4E-05 45.8 14.1 117 179-314 220-349 (472)
333 PRK14952 DNA polymerase III su 92.5 0.34 7.3E-06 53.6 7.6 44 297-342 116-159 (584)
334 PF03237 Terminase_6: Terminas 92.5 1.7 3.8E-05 45.0 12.8 110 184-315 1-113 (384)
335 COG1110 Reverse gyrase [DNA re 92.4 0.27 5.8E-06 56.1 6.5 66 389-454 120-191 (1187)
336 TIGR02524 dot_icm_DotB Dot/Icm 92.3 0.2 4.3E-06 52.1 5.1 26 179-205 133-158 (358)
337 PRK07003 DNA polymerase III su 92.2 0.49 1.1E-05 53.2 8.3 44 298-343 118-161 (830)
338 TIGR01073 pcrA ATP-dependent D 92.2 0.36 7.8E-06 55.5 7.6 72 164-244 3-74 (726)
339 PRK13851 type IV secretion sys 92.2 0.22 4.8E-06 51.3 5.3 44 176-231 158-201 (344)
340 KOG1513 Nuclear helicase MOP-3 92.2 0.25 5.4E-06 54.6 5.7 78 437-514 850-938 (1300)
341 KOG0701 dsRNA-specific nucleas 92.1 0.092 2E-06 63.2 2.6 94 396-489 294-399 (1606)
342 KOG0742 AAA+-type ATPase [Post 92.1 0.28 6E-06 50.4 5.6 58 282-343 430-496 (630)
343 COG4962 CpaF Flp pilus assembl 92.0 0.27 5.9E-06 49.7 5.5 60 162-233 154-214 (355)
344 PRK11823 DNA repair protein Ra 92.0 1.2 2.5E-05 48.0 10.7 58 173-242 68-130 (446)
345 PRK13900 type IV secretion sys 91.9 0.51 1.1E-05 48.6 7.6 43 177-231 157-199 (332)
346 PRK13764 ATPase; Provisional 91.9 0.34 7.3E-06 53.6 6.5 26 179-205 256-281 (602)
347 PRK14963 DNA polymerase III su 91.8 0.6 1.3E-05 50.9 8.3 29 297-329 114-142 (504)
348 PRK13341 recombination factor 91.6 1.2 2.7E-05 50.6 10.9 41 299-344 109-149 (725)
349 PRK08506 replicative DNA helic 91.6 1.8 3.9E-05 47.0 11.8 115 179-313 191-316 (472)
350 COG1474 CDC6 Cdc6-related prot 91.5 1.3 2.7E-05 46.3 10.1 19 181-199 43-61 (366)
351 PRK11034 clpA ATP-dependent Cl 91.5 2 4.2E-05 49.3 12.3 44 301-344 280-327 (758)
352 COG1200 RecG RecG-like helicas 91.5 0.71 1.5E-05 50.8 8.3 88 382-469 297-391 (677)
353 PRK14960 DNA polymerase III su 91.5 0.4 8.6E-06 53.2 6.5 43 298-342 117-159 (702)
354 PRK10689 transcription-repair 91.4 0.5 1.1E-05 56.6 7.8 75 393-467 648-727 (1147)
355 PRK06067 flagellar accessory p 91.4 2.1 4.6E-05 41.6 11.1 52 179-242 24-75 (234)
356 KOG1133 Helicase of the DEAD s 91.4 0.27 5.8E-06 53.7 4.9 44 164-207 14-61 (821)
357 PRK14962 DNA polymerase III su 91.2 0.69 1.5E-05 50.0 8.1 19 182-200 38-56 (472)
358 PRK14955 DNA polymerase III su 91.2 0.68 1.5E-05 49.0 7.9 19 182-200 40-58 (397)
359 PRK10416 signal recognition pa 91.2 5.4 0.00012 40.8 14.1 54 298-351 195-255 (318)
360 PF02534 T4SS-DNA_transf: Type 91.2 0.24 5.1E-06 53.8 4.5 49 181-242 45-93 (469)
361 PRK14958 DNA polymerase III su 91.1 0.95 2E-05 49.5 9.0 39 298-337 118-156 (509)
362 PRK07994 DNA polymerase III su 91.0 1.8 3.9E-05 48.4 11.2 19 183-201 41-59 (647)
363 cd01126 TraG_VirD4 The TraG/Tr 91.0 0.17 3.8E-06 53.3 3.2 48 182-242 1-48 (384)
364 PF02572 CobA_CobO_BtuR: ATP:c 91.0 4.3 9.2E-05 37.4 11.8 56 294-349 91-148 (172)
365 PRK09112 DNA polymerase III su 90.9 0.97 2.1E-05 46.9 8.5 44 297-342 139-182 (351)
366 PRK07471 DNA polymerase III su 90.9 1.8 3.9E-05 45.2 10.4 138 182-339 43-180 (365)
367 KOG0739 AAA+-type ATPase [Post 90.8 2 4.4E-05 42.6 9.9 153 141-359 128-297 (439)
368 PF13177 DNA_pol3_delta2: DNA 90.8 1.7 3.8E-05 39.6 9.2 41 298-339 101-141 (162)
369 PRK08840 replicative DNA helic 90.6 4.5 9.7E-05 43.7 13.5 116 179-312 216-342 (464)
370 COG3973 Superfamily I DNA and 90.6 1.4 3E-05 47.8 9.3 92 147-243 186-284 (747)
371 TIGR01420 pilT_fam pilus retra 90.6 0.66 1.4E-05 48.1 6.9 43 179-231 121-163 (343)
372 COG0470 HolB ATPase involved i 90.5 1 2.2E-05 46.1 8.3 45 297-343 107-151 (325)
373 TIGR03878 thermo_KaiC_2 KaiC d 90.5 2.1 4.6E-05 42.4 10.2 37 179-226 35-71 (259)
374 PRK14961 DNA polymerase III su 90.5 0.43 9.3E-06 49.9 5.6 41 298-340 118-158 (363)
375 TIGR00665 DnaB replicative DNA 90.5 3.1 6.7E-05 44.7 12.3 114 179-313 194-319 (434)
376 cd01130 VirB11-like_ATPase Typ 90.5 0.51 1.1E-05 44.2 5.5 33 165-197 9-42 (186)
377 PRK12323 DNA polymerase III su 90.4 1.4 2.9E-05 49.1 9.4 45 297-343 122-166 (700)
378 PRK04537 ATP-dependent RNA hel 90.4 1.8 3.8E-05 48.3 10.5 74 218-307 256-333 (572)
379 KOG0344 ATP-dependent RNA heli 90.3 3.5 7.7E-05 44.5 12.0 98 189-310 366-467 (593)
380 KOG0733 Nuclear AAA ATPase (VC 90.3 3.6 7.7E-05 44.9 12.0 54 141-197 506-562 (802)
381 PRK07004 replicative DNA helic 90.3 2.3 5E-05 45.9 11.0 116 179-313 212-338 (460)
382 cd01121 Sms Sms (bacterial rad 90.2 3.7 8E-05 43.0 12.1 58 173-242 70-132 (372)
383 COG2909 MalT ATP-dependent tra 90.2 0.96 2.1E-05 51.0 8.0 44 298-341 128-171 (894)
384 PRK08760 replicative DNA helic 90.0 2.6 5.7E-05 45.7 11.2 113 180-312 229-352 (476)
385 PRK04328 hypothetical protein; 90.0 2.5 5.4E-05 41.6 10.2 53 179-243 22-74 (249)
386 PRK08006 replicative DNA helic 89.9 5.9 0.00013 42.9 13.8 116 179-312 223-349 (471)
387 PRK05973 replicative DNA helic 89.9 0.71 1.5E-05 44.9 6.1 81 149-242 24-114 (237)
388 PHA03372 DNA packaging termina 89.9 3.8 8.3E-05 44.9 11.9 133 178-341 200-338 (668)
389 PRK00440 rfc replication facto 89.8 2.6 5.7E-05 42.9 10.6 38 299-337 102-139 (319)
390 PRK13897 type IV secretion sys 89.8 0.33 7.1E-06 53.9 4.1 49 181-242 159-207 (606)
391 PRK05748 replicative DNA helic 89.7 4.4 9.4E-05 43.7 12.6 114 179-312 202-327 (448)
392 PF06733 DEAD_2: DEAD_2; Inte 89.7 0.2 4.3E-06 46.4 2.0 44 271-314 115-160 (174)
393 PRK14959 DNA polymerase III su 89.6 1.3 2.8E-05 49.2 8.5 44 298-345 118-163 (624)
394 PRK14965 DNA polymerase III su 89.6 0.87 1.9E-05 50.6 7.3 46 297-344 117-162 (576)
395 cd03239 ABC_SMC_head The struc 89.6 1.5 3.2E-05 40.8 7.8 42 297-338 114-156 (178)
396 TIGR02928 orc1/cdc6 family rep 89.6 1.3 2.8E-05 46.3 8.2 17 181-197 41-57 (365)
397 KOG2028 ATPase related to the 89.5 1.1 2.4E-05 45.5 7.2 19 181-199 163-181 (554)
398 PRK09111 DNA polymerase III su 89.5 1.7 3.7E-05 48.4 9.4 40 297-337 130-169 (598)
399 COG4626 Phage terminase-like p 89.3 2.1 4.6E-05 46.2 9.5 74 164-245 60-144 (546)
400 PF01637 Arch_ATPase: Archaeal 89.2 0.41 8.9E-06 46.1 4.0 56 282-341 105-166 (234)
401 PF10593 Z1: Z1 domain; Inter 89.2 1.1 2.3E-05 43.9 6.7 79 418-501 110-193 (239)
402 KOG0060 Long-chain acyl-CoA tr 89.1 0.77 1.7E-05 49.5 6.0 34 295-328 584-617 (659)
403 PF12846 AAA_10: AAA-like doma 89.1 0.64 1.4E-05 46.8 5.5 42 181-233 2-43 (304)
404 PRK08691 DNA polymerase III su 89.1 1.3 2.8E-05 49.6 8.0 40 297-337 117-156 (709)
405 cd01129 PulE-GspE PulE/GspE Th 89.0 0.82 1.8E-05 45.5 6.0 37 167-204 65-103 (264)
406 PRK06871 DNA polymerase III su 89.0 1.5 3.2E-05 45.0 7.9 34 166-199 3-43 (325)
407 PRK06964 DNA polymerase III su 89.0 1.6 3.5E-05 45.0 8.2 34 166-199 2-40 (342)
408 PRK07940 DNA polymerase III su 88.9 1 2.2E-05 47.5 6.8 46 297-344 115-160 (394)
409 PRK05563 DNA polymerase III su 88.9 0.82 1.8E-05 50.6 6.4 20 181-200 39-58 (559)
410 PRK05896 DNA polymerase III su 88.9 1.1 2.4E-05 49.5 7.3 20 181-200 39-58 (605)
411 PRK14951 DNA polymerase III su 88.8 1.9 4.1E-05 48.1 9.1 44 298-343 123-166 (618)
412 PRK08451 DNA polymerase III su 88.8 0.45 9.7E-06 52.0 4.2 40 297-337 115-154 (535)
413 TIGR02639 ClpA ATP-dependent C 88.7 7 0.00015 45.0 14.0 21 180-200 203-223 (731)
414 KOG0298 DEAD box-containing he 88.6 0.73 1.6E-05 53.8 5.7 97 392-493 1219-1316(1394)
415 TIGR03880 KaiC_arch_3 KaiC dom 88.5 2.7 5.8E-05 40.5 9.1 52 179-242 15-66 (224)
416 KOG0339 ATP-dependent RNA heli 88.4 3.9 8.4E-05 43.5 10.3 71 393-467 295-375 (731)
417 TIGR00678 holB DNA polymerase 88.4 1.2 2.6E-05 41.7 6.4 17 297-313 94-110 (188)
418 PRK14701 reverse gyrase; Provi 88.3 1.5 3.2E-05 54.4 8.6 61 393-453 121-187 (1638)
419 PRK09376 rho transcription ter 88.3 3.4 7.5E-05 43.1 9.9 90 105-196 69-185 (416)
420 PRK07414 cob(I)yrinic acid a,c 88.3 5.4 0.00012 36.8 10.3 52 297-348 113-166 (178)
421 TIGR00763 lon ATP-dependent pr 88.2 5.4 0.00012 46.2 12.7 19 179-197 346-364 (775)
422 COG3267 ExeA Type II secretory 88.1 2.8 6.1E-05 40.8 8.6 23 176-198 46-69 (269)
423 PRK06090 DNA polymerase III su 88.0 2.3 5.1E-05 43.4 8.6 35 165-199 3-44 (319)
424 PRK04837 ATP-dependent RNA hel 88.0 2.7 5.9E-05 44.9 9.6 72 219-306 255-330 (423)
425 PRK14954 DNA polymerase III su 88.0 2.5 5.4E-05 47.2 9.4 19 182-200 40-58 (620)
426 COG1197 Mfd Transcription-repa 88.0 2.9 6.3E-05 49.0 10.1 75 393-467 642-721 (1139)
427 PRK14957 DNA polymerase III su 87.8 2.7 5.9E-05 46.2 9.4 40 297-337 117-156 (546)
428 KOG0331 ATP-dependent RNA heli 87.7 2.4 5.2E-05 45.7 8.7 73 217-305 339-415 (519)
429 PF05729 NACHT: NACHT domain 87.7 3.7 8E-05 36.9 9.1 16 182-197 2-17 (166)
430 TIGR03346 chaperone_ClpB ATP-d 87.6 5.2 0.00011 46.9 12.2 20 180-199 194-213 (852)
431 PF03969 AFG1_ATPase: AFG1-lik 87.6 11 0.00023 39.4 13.3 46 298-344 126-172 (362)
432 PTZ00110 helicase; Provisional 87.6 3.3 7E-05 45.9 10.1 72 218-305 376-451 (545)
433 COG0630 VirB11 Type IV secreto 87.6 1.1 2.4E-05 45.7 5.9 55 165-231 127-182 (312)
434 PRK13850 type IV secretion sys 87.5 0.69 1.5E-05 52.0 4.8 49 181-242 140-188 (670)
435 PRK04841 transcriptional regul 87.5 5.3 0.00011 47.2 12.6 44 299-342 121-164 (903)
436 TIGR00635 ruvB Holliday juncti 87.5 2.2 4.7E-05 43.4 8.1 17 181-197 31-47 (305)
437 COG2804 PulE Type II secretory 87.5 0.86 1.9E-05 48.6 5.1 41 166-207 242-284 (500)
438 PRK08699 DNA polymerase III su 87.4 3.2 6.9E-05 42.6 9.2 35 166-200 2-41 (325)
439 PRK14969 DNA polymerase III su 87.3 1.1 2.3E-05 49.4 6.0 40 297-337 117-156 (527)
440 PF00437 T2SE: Type II/IV secr 87.2 0.62 1.3E-05 46.5 3.8 43 178-231 125-167 (270)
441 KOG0741 AAA+-type ATPase [Post 87.1 6.5 0.00014 42.2 11.1 68 148-228 494-573 (744)
442 cd00268 DEADc DEAD-box helicas 87.1 3 6.4E-05 39.3 8.3 70 394-467 69-148 (203)
443 PRK09354 recA recombinase A; P 87.0 2 4.4E-05 44.2 7.5 44 179-233 59-102 (349)
444 PRK05636 replicative DNA helic 87.0 5 0.00011 43.8 10.9 16 298-313 374-389 (505)
445 PF05707 Zot: Zonular occluden 87.0 0.99 2.1E-05 42.5 4.9 54 299-352 79-137 (193)
446 cd01127 TrwB Bacterial conjuga 87.0 0.57 1.2E-05 49.9 3.6 49 175-234 37-85 (410)
447 PF04665 Pox_A32: Poxvirus A32 86.8 0.86 1.9E-05 44.3 4.4 36 182-228 15-50 (241)
448 PRK10590 ATP-dependent RNA hel 86.7 3.9 8.4E-05 44.2 9.9 71 218-304 244-318 (456)
449 TIGR00631 uvrb excinuclease AB 86.6 9.1 0.0002 43.3 13.0 78 218-311 441-522 (655)
450 PRK10865 protein disaggregatio 86.6 3.9 8.5E-05 47.8 10.4 20 180-199 199-218 (857)
451 TIGR00767 rho transcription te 86.5 2.2 4.7E-05 44.7 7.4 19 179-197 167-185 (415)
452 PRK07993 DNA polymerase III su 86.5 4.2 9.1E-05 41.9 9.5 35 165-199 2-43 (334)
453 TIGR02012 tigrfam_recA protein 86.5 1.6 3.4E-05 44.5 6.3 44 179-233 54-97 (321)
454 PRK05595 replicative DNA helic 86.4 2.8 6.2E-05 45.1 8.6 51 180-241 201-251 (444)
455 COG2255 RuvB Holliday junction 86.4 1.6 3.6E-05 43.0 6.0 19 181-199 53-71 (332)
456 PRK10436 hypothetical protein; 86.2 1.5 3.2E-05 47.2 6.2 38 167-205 203-242 (462)
457 PRK11192 ATP-dependent RNA hel 86.2 3.8 8.3E-05 43.9 9.5 72 218-305 244-319 (434)
458 cd01131 PilT Pilus retraction 86.2 1.1 2.5E-05 42.3 4.8 21 183-204 4-24 (198)
459 TIGR01054 rgy reverse gyrase. 85.9 1.9 4E-05 52.0 7.5 62 392-453 119-187 (1171)
460 PF10412 TrwB_AAD_bind: Type I 85.8 0.97 2.1E-05 47.7 4.6 47 177-234 12-58 (386)
461 PRK07133 DNA polymerase III su 85.8 1.5 3.3E-05 49.4 6.3 19 182-200 42-60 (725)
462 TIGR03345 VI_ClpV1 type VI sec 85.7 2.5 5.4E-05 49.3 8.2 19 181-199 209-227 (852)
463 PRK06321 replicative DNA helic 85.7 9.2 0.0002 41.4 12.0 112 181-313 227-350 (472)
464 CHL00095 clpC Clp protease ATP 85.6 6.6 0.00014 45.9 11.7 22 180-201 200-221 (821)
465 TIGR03819 heli_sec_ATPase heli 85.6 2 4.4E-05 44.4 6.7 63 155-231 154-217 (340)
466 PRK11776 ATP-dependent RNA hel 85.6 3.9 8.4E-05 44.3 9.2 73 219-307 242-318 (460)
467 TIGR02640 gas_vesic_GvpN gas v 85.4 1.3 2.7E-05 44.1 4.9 28 172-199 13-40 (262)
468 COG2109 BtuR ATP:corrinoid ade 85.4 7.9 0.00017 35.9 9.5 53 298-350 121-175 (198)
469 PRK14950 DNA polymerase III su 85.2 2 4.2E-05 48.1 6.8 19 182-200 40-58 (585)
470 KOG1513 Nuclear helicase MOP-3 85.1 0.47 1E-05 52.6 1.8 154 164-340 263-454 (1300)
471 TIGR02533 type_II_gspE general 85.1 1.4 3E-05 47.9 5.4 30 167-196 227-258 (486)
472 PRK14948 DNA polymerase III su 84.9 1.5 3.2E-05 49.2 5.7 20 181-200 39-58 (620)
473 KOG0745 Putative ATP-dependent 84.9 1.1 2.4E-05 46.6 4.3 22 178-199 224-245 (564)
474 COG1132 MdlB ABC-type multidru 84.8 4.2 9.1E-05 45.3 9.3 39 297-335 481-519 (567)
475 PRK09165 replicative DNA helic 84.7 8.9 0.00019 41.9 11.5 124 180-313 217-355 (497)
476 COG0513 SrmB Superfamily II DN 84.5 5.4 0.00012 43.8 9.8 70 219-304 273-346 (513)
477 PRK13822 conjugal transfer cou 84.5 1.2 2.5E-05 50.0 4.6 50 180-242 224-273 (641)
478 KOG0347 RNA helicase [RNA proc 84.4 1.6 3.5E-05 46.6 5.2 168 397-570 266-480 (731)
479 cd01128 rho_factor Transcripti 84.2 2.1 4.6E-05 42.1 5.8 20 177-196 13-32 (249)
480 PHA00012 I assembly protein 84.1 7 0.00015 39.7 9.3 58 298-355 80-142 (361)
481 COG5008 PilU Tfp pilus assembl 84.0 0.94 2E-05 44.1 3.1 43 141-203 106-149 (375)
482 PF13555 AAA_29: P-loop contai 84.0 1.4 3E-05 33.0 3.4 25 179-205 22-46 (62)
483 PRK13880 conjugal transfer cou 84.0 0.98 2.1E-05 50.8 3.8 46 181-239 176-221 (636)
484 cd03114 ArgK-like The function 83.9 5.7 0.00012 35.6 8.1 18 183-200 2-19 (148)
485 TIGR01243 CDC48 AAA family ATP 83.6 3.5 7.5E-05 47.5 8.2 54 141-197 448-504 (733)
486 TIGR00614 recQ_fam ATP-depende 83.6 2.9 6.4E-05 45.4 7.2 59 394-452 51-109 (470)
487 TIGR03743 SXT_TraD conjugative 83.6 3.9 8.4E-05 46.0 8.2 54 179-243 175-230 (634)
488 TIGR02868 CydC thiol reductant 83.5 2.4 5.2E-05 46.8 6.7 39 297-335 486-524 (529)
489 PF00098 zf-CCHC: Zinc knuckle 83.2 1 2.2E-05 24.7 1.7 17 546-562 2-18 (18)
490 CHL00176 ftsH cell division pr 83.2 3.8 8.2E-05 46.1 8.0 18 180-197 216-233 (638)
491 PRK06647 DNA polymerase III su 83.1 3.1 6.7E-05 46.1 7.2 18 182-199 40-57 (563)
492 COG0552 FtsY Signal recognitio 83.1 35 0.00075 34.8 13.8 131 182-351 141-280 (340)
493 PRK06620 hypothetical protein; 83.1 6.8 0.00015 37.5 8.8 108 220-343 15-126 (214)
494 COG3973 Superfamily I DNA and 83.1 6.1 0.00013 43.1 8.9 119 333-471 591-716 (747)
495 TIGR01243 CDC48 AAA family ATP 83.0 5.8 0.00013 45.7 9.6 54 141-197 173-229 (733)
496 TIGR02538 type_IV_pilB type IV 82.9 1.7 3.7E-05 48.2 5.1 38 167-205 301-340 (564)
497 KOG0333 U5 snRNP-like RNA heli 82.6 9.7 0.00021 40.8 10.0 71 218-304 516-590 (673)
498 PRK13700 conjugal transfer pro 82.6 1.3 2.9E-05 49.6 4.1 71 151-234 156-228 (732)
499 PRK01297 ATP-dependent RNA hel 82.3 7.3 0.00016 42.4 9.7 73 218-306 334-410 (475)
500 TIGR02767 TraG-Ti Ti-type conj 82.3 1.7 3.7E-05 48.5 4.8 49 181-242 212-260 (623)
No 1
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1e-138 Score=1003.71 Aligned_cols=581 Identities=72% Similarity=1.164 Sum_probs=559.1
Q ss_pred CCcCCCcccccchhHHHHHHHHHHHHhccCCCcc----------hhHHhhhhhhccccCHHHHHHhhhhcCC-CCChhhh
Q 007829 2 MEEEDDYVEYVPIAKRRAMEAQKILQRKGQASTL----------EDELEKSKLAEVKPSLLVKASQLKRDQP-EISPTEQ 70 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~ 70 (588)
+++|+||++||||.+||++..+++++....+... +..+.+.++.+++.||+++|.++++.++ ..++.|+
T Consensus 18 de~d~dyv~yv~v~err~~~~~k~l~r~~k~~~~~~q~~~~~~~~~~~~d~~g~~~n~sLL~qh~elk~~~~ak~sa~Ek 97 (610)
T KOG0341|consen 18 DEDDEDYVPYVPVQERRAQVHRKLLQRQVKAPTEEEQEDSESEREKKEDDKQGEEANKSLLDQHTELKETAEAKISASEK 97 (610)
T ss_pred ccccccceecccHHHHHHHHHHHHHHhhccccchhhccchhcccccCcccccchhhhhhHHHHHHHHHhhhhhhcchHHH
Confidence 4668899999999999999999998665443211 1222345677888999999999999776 6899999
Q ss_pred hHHHHHHHHHhhhcccccccHHhhhcCCcccCCCcCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCC
Q 007829 71 IVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRF 150 (588)
Q Consensus 71 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l 150 (588)
++.+|+++++.+++.+.||+|.|+++++.|++|+.+.|+||..+++||+++.+..|++|+|.|+|+++|||+.+|.+|+|
T Consensus 98 ql~eEee~me~v~~~k~LmsV~ElakGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKF 177 (610)
T KOG0341|consen 98 QLMEEEEIMESVADGKALMSVAELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKF 177 (610)
T ss_pred HHHHHHHHHHHHhcCccceeHHHHhCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007829 151 PEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
|..+++.|+++|+.+|||+|.+++|.+++|||+|++|.||||||++|.||+++.++++++..|+..+.||.+|||||+|+
T Consensus 178 P~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRE 257 (610)
T KOG0341|consen 178 PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRE 257 (610)
T ss_pred CHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcc
Q 007829 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~ 310 (588)
||.|+++.+..++..+...++|.+++.+++||.++.++...+++|+||+|+||+||.|+|.++.++|+-|+|+++||||+
T Consensus 258 LArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADR 337 (610)
T KOG0341|consen 258 LARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADR 337 (610)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh
Q 007829 311 LVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 390 (588)
Q Consensus 311 l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l 390 (588)
|+|+||+++++.||.+|+.++|+++||||||.+++.|+++.+.+|+.++++++++++.+++|+++|+.+++|+.++++||
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCL 417 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECL 417 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC
Q 007829 391 QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470 (588)
Q Consensus 391 ~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~ 470 (588)
+++.+||||||..+.+++.+++||..+|+.++++|||.+|++|..+++.|+.|+.+||||||+++.|+|||++.||||||
T Consensus 418 QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 418 QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhccCchhhHHHHhhccCCCCCccc
Q 007829 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYC 550 (588)
Q Consensus 471 ~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l~~~~~~~~~~~~~~~~~~c~~c 550 (588)
||.++++|+||||||||.|++|.|++|++++.++..+.+|+++|.+++|++|++|.+|+.+++. ..+.+.++.+||+||
T Consensus 498 MP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~-~~~a~~~~~kGCayC 576 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEE-ETIADAGGEKGCAYC 576 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccc-cccccCCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998776 678899999999999
Q ss_pred CCCCcccccCcchHHHHHHHhhc-CCCCccCCCC
Q 007829 551 GGLGHRIRDCPKLEHQKSMAIAS-SRRDYFGSGG 583 (588)
Q Consensus 551 g~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 583 (588)
||+||||++||||++++++++++ +|+||+++|+
T Consensus 577 gGLGHRItdCPKle~~~~k~~sn~gRkdy~~~~~ 610 (610)
T KOG0341|consen 577 GGLGHRITDCPKLEAQQNKQISNIGRKDYLGSGG 610 (610)
T ss_pred cCCCcccccCchhhhhcchhhhhhccccccCCCC
Confidence 99999999999999999999888 7999999875
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-80 Score=639.32 Aligned_cols=411 Identities=43% Similarity=0.737 Sum_probs=366.0
Q ss_pred CccccCCHHHHHHHHHhcCeEeecCC-CCCCCCCC-----------------------------CCCCCCHHHHHHHHHC
Q 007829 112 LPIRRMSKKACDLIRKQWHIIVDGED-IPPPIKNF-----------------------------KDMRFPEPILKKLKAK 161 (588)
Q Consensus 112 ~~~~~~~~~~~~~~r~~~~i~v~g~~-~p~p~~~f-----------------------------~~~~l~~~l~~~l~~~ 161 (588)
.....+...+....+.+..+.+.+.+ +|.|..+| ..+++++.+...++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ls~~~~~~lk~~ 109 (519)
T KOG0331|consen 30 PSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQELGLSEELMKALKEQ 109 (519)
T ss_pred cccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcccccHHHHHHHHhc
Confidence 33444444455555555566665544 56555544 4455666677778899
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
||..|||||.++||.+++|+|++++|.||||||++|++|+++++... ......+.+|++|||+||||||.|+.+.+..
T Consensus 110 g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~--~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 110 GFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNE--QGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhc--cccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998863 2334456799999999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHH
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~ 321 (588)
++..+ .+++.|++||.+...|...+.+|++|+||||+||++++..+.++|++|.|+|+||||+|++|||+++++
T Consensus 188 ~~~~~------~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~ 261 (519)
T KOG0331|consen 188 FGKSL------RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIR 261 (519)
T ss_pred HcCCC------CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHH
Confidence 99876 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCC--CcccceEEEeeehhhHHHHHHHHHHhhc----CC
Q 007829 322 EVFDHF-KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQK----TP 394 (588)
Q Consensus 322 ~i~~~~-~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~--~~~~~v~~~~~~~~~~~k~~~ll~~l~~----~~ 394 (588)
.|+..+ ++.+|++++|||+|..++.++..++.+|+.+.++... .++.++.|.+..+...+|...+...|.. ..
T Consensus 262 ~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~ 341 (519)
T KOG0331|consen 262 KILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSE 341 (519)
T ss_pred HHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCC
Confidence 999999 6677999999999999999999999999999988654 6778888888888876666555555543 46
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC
Q 007829 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s 474 (588)
+++||||+|+..|+.|+..|+..++++.+|||+.+|.+|..+++.|++|+..||||||+++||||+|+|++|||||+|.+
T Consensus 342 ~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~ 421 (519)
T KOG0331|consen 342 GKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNN 421 (519)
T ss_pred CcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhccCc
Q 007829 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531 (588)
Q Consensus 475 ~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l~~~ 531 (588)
+++|+||+|||||+|++|.+++|++.. +......+++.+++++|.+|+.+..+...
T Consensus 422 vEdYVHRiGRTGRa~~~G~A~tfft~~-~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 422 VEDYVHRIGRTGRAGKKGTAITFFTSD-NAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred HHHHHhhcCccccCCCCceEEEEEeHH-HHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 999999999999999999999999998 78899999999999999999999887553
No 3
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7e-80 Score=616.70 Aligned_cols=419 Identities=40% Similarity=0.716 Sum_probs=391.6
Q ss_pred cCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEE
Q 007829 105 LTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi 184 (588)
..||.. ..+..|++.+|..||..++|..+|..+|+|+.+|++.+||..+++.+.+.||..|+|+|+++||..++.+|+|
T Consensus 208 drhW~~-k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~i 286 (673)
T KOG0333|consen 208 DRHWSE-KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPI 286 (673)
T ss_pred ccchhh-hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCee
Confidence 578975 4567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCC-CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007829 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMP-IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 185 ~~a~TGsGKTl~~~lp~l~~~~~~~~~~~-~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
++|.||||||++|++|++..+........ .....||+++|++|||+|++|+.++-.+|+.++ +++++.++||.
T Consensus 287 gvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l------g~r~vsvigg~ 360 (673)
T KOG0333|consen 287 GVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL------GIRTVSVIGGL 360 (673)
T ss_pred eEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc------cceEEEEeccc
Confidence 99999999999999999988776543333 245679999999999999999999999999887 89999999999
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhh--------------
Q 007829 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA-------------- 329 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~-------------- 329 (588)
+..++.-.+..||+|+||||++|.+.|.+..+.+++|.|||+||||+|+||||++++..++.+++.
T Consensus 361 s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~ 440 (673)
T KOG0333|consen 361 SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEE 440 (673)
T ss_pred chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHH
Confidence 999998899999999999999999999999999999999999999999999999999999998853
Q ss_pred -----------cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcC-CCCE
Q 007829 330 -----------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT-PPPV 397 (588)
Q Consensus 330 -----------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~-~~~v 397 (588)
.+|+++||||+|+.+..+++.++.+|+.+.++..+.....+.|.+..+..+.+...|++.+.+. .+|+
T Consensus 441 ~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppi 520 (673)
T KOG0333|consen 441 RVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPI 520 (673)
T ss_pred HHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCE
Confidence 2799999999999999999999999999999999999999999999999999999999999875 7899
Q ss_pred EEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhH
Q 007829 398 LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 477 (588)
Q Consensus 398 iIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~ 477 (588)
|||+|+++.|+.|++.|.+.|+.+..+||+.+|++|..++..|++|..+||||||+++||||+|+|.+||||||++++++
T Consensus 521 IIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieD 600 (673)
T KOG0333|consen 521 IIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIED 600 (673)
T ss_pred EEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHH-HhcCcCchHHhhccCc
Q 007829 478 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ-EAKQRIPPVLAELNDP 531 (588)
Q Consensus 478 y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~-~~~~~vp~~l~~l~~~ 531 (588)
|+||||||||+|+.|+|++|+++. +..++.+|+..+. ......|+.++...++
T Consensus 601 YtHRIGRTgRAGk~GtaiSflt~~-dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 601 YTHRIGRTGRAGKSGTAISFLTPA-DTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred HHHHhccccccccCceeEEEeccc-hhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 999999999999999999999999 4556677877776 5567788888777665
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-77 Score=594.79 Aligned_cols=451 Identities=41% Similarity=0.629 Sum_probs=421.2
Q ss_pred CCcccCCCcCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH
Q 007829 97 GITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV 176 (588)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~ 176 (588)
.++|..+.+..|..+.+|..+.+.+.-.+|..+++.|.|..+|.|+.+|++++|.+.|+.++.+..|.+|||+|.+++|.
T Consensus 177 ~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalpt 256 (731)
T KOG0339|consen 177 EIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPT 256 (731)
T ss_pred hccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccc
Confidence 55666666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceE
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRT 256 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~ 256 (588)
.++|+|++.+|.||||||.+|+.|++.+++.+. .+.+++||.+||+||||+||.|++.++++|++.. ++++
T Consensus 257 alsgrdvigIAktgSgktaAfi~pm~~himdq~---eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y------gl~~ 327 (731)
T KOG0339|consen 257 ALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP---ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY------GLRV 327 (731)
T ss_pred ccccccchheeeccCcchhHHHHHHHHHhcchh---hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc------cceE
Confidence 999999999999999999999999999998754 4556899999999999999999999999999876 9999
Q ss_pred EEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEE
Q 007829 257 LLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLF 336 (588)
Q Consensus 257 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~ 336 (588)
++++||.+..+|...|+.|+.||||||+||++++..+..++.++.||||||||+|.++||+.+++.|..++++++|+|+|
T Consensus 328 v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllF 407 (731)
T KOG0339|consen 328 VAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLF 407 (731)
T ss_pred EEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh-hHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHHH
Q 007829 337 SATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHEY 413 (588)
Q Consensus 337 SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~-~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~~ 413 (588)
|||++..++.+++.+|.+|+.+..+..+.++..+.|.+..+. .+.|+..|+..|.+. .+++|||+..+.+++.++..
T Consensus 408 saTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~ 487 (731)
T KOG0339|consen 408 SATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAAN 487 (731)
T ss_pred eccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHH
Confidence 999999999999999999999999999999999999998876 456788899888774 45999999999999999999
Q ss_pred HHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccE
Q 007829 414 LLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 493 (588)
Q Consensus 414 L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~ 493 (588)
|..+|+++..+||+|+|.+|.+++..|+.+...|||+||++++|+|||+++.|||||+-.+++.|.|||||+||+|.+|+
T Consensus 488 Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGv 567 (731)
T KOG0339|consen 488 LKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGV 567 (731)
T ss_pred hccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhccCchh--hHHHHhhccCCCCCcccCCCCccc
Q 007829 494 ATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME--DVDAITNASGVKGCAYCGGLGHRI 557 (588)
Q Consensus 494 ~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l~~~~~--~~~~~~~~~~~~~c~~cg~~g~~~ 557 (588)
+++++++. +..+...|++.|+.++|.||+.|.+|..... ...+....++.++...-||+|+|-
T Consensus 568 ayTlvTeK-Da~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~~~~~gglgyr~ 632 (731)
T KOG0339|consen 568 AYTLVTEK-DAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKGTGGGGGLGYRE 632 (731)
T ss_pred eeEEechh-hHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCccccc
Confidence 99999998 5669999999999999999999999886543 334555566667777777888873
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-72 Score=610.62 Aligned_cols=417 Identities=44% Similarity=0.713 Sum_probs=378.7
Q ss_pred cCCCCCCCccccCCHHHHHHHHHhcCeEe-ecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCE
Q 007829 105 LTGWKPPLPIRRMSKKACDLIRKQWHIIV-DGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDM 183 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~v-~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dv 183 (588)
+..|.++..+..++.++++.+|++..+.+ +|.++|+|+.+|++++||+.+++.|.+.||.+|||+|.++||.+++|+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dv 170 (545)
T PTZ00110 91 KNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDM 170 (545)
T ss_pred hhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCE
Confidence 45667778889999999999999999886 79999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007829 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 i~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
|++||||||||++|++|++.++.... ....+.+|.+|||+||++||.|+.+.+.+|.... .+++.+++||.
T Consensus 171 I~~ApTGSGKTlaylLP~l~~i~~~~---~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~------~i~~~~~~gg~ 241 (545)
T PTZ00110 171 IGIAETGSGKTLAFLLPAIVHINAQP---LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS------KIRNTVAYGGV 241 (545)
T ss_pred EEEeCCCChHHHHHHHHHHHHHHhcc---cccCCCCcEEEEECChHHHHHHHHHHHHHHhccc------CccEEEEeCCC
Confidence 99999999999999999998876532 1223468999999999999999999999997654 78899999999
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
+...+...+..+++|+|+||++|.+++......++++++|||||||+|++++|+.+++.++..+++.+|+++||||+|..
T Consensus 242 ~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~ 321 (545)
T PTZ00110 242 PKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKE 321 (545)
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHH
Confidence 99999899999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-CCeEEEecCCC-CcccceEEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcC
Q 007829 344 IQNFARSALV-KPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 344 i~~~~~~~l~-~p~~i~~~~~~-~~~~~v~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
++.+++.++. .++.+.++... ....++.+.+..+....+...+...+.. ...++||||+++..|+.++..|...|
T Consensus 322 v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g 401 (545)
T PTZ00110 322 VQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG 401 (545)
T ss_pred HHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC
Confidence 9999998886 57877776554 3445677777776666666555555543 56799999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEE
Q 007829 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498 (588)
Q Consensus 419 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~ 498 (588)
+.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|++|||||+|.+++.|+||+|||||+|+.|.+++|+
T Consensus 402 ~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 402 WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhcCcCchHHhhccCc
Q 007829 499 NKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531 (588)
Q Consensus 499 ~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l~~~ 531 (588)
+++ +...+.+|.+++++++|.+|++|.++...
T Consensus 482 ~~~-~~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 513 (545)
T PTZ00110 482 TPD-KYRLARDLVKVLREAKQPVPPELEKLSNE 513 (545)
T ss_pred Ccc-hHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 987 67889999999999999999999988543
No 6
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-74 Score=558.40 Aligned_cols=422 Identities=37% Similarity=0.631 Sum_probs=379.2
Q ss_pred CCCc-CCCCCCCccccCCHHHHHHHHHhc-CeEee----c--CCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCCcHHHHH
Q 007829 102 DPLL-TGWKPPLPIRRMSKKACDLIRKQW-HIIVD----G--EDIPPPIKNFKDM-RFPEPILKKLKAKGIVQPTPIQVQ 172 (588)
Q Consensus 102 ~~~~-~~~~~~~~~~~~~~~~~~~~r~~~-~i~v~----g--~~~p~p~~~f~~~-~l~~~l~~~l~~~g~~~p~~~Q~~ 172 (588)
.|+. ..|+.+.+.+.||+.+++.+|+.. +|.++ | ..+|+|.-+|++. .--+++++.+++.||.+|||+|.|
T Consensus 170 pPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQ 249 (629)
T KOG0336|consen 170 PPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQ 249 (629)
T ss_pred CchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhc
Confidence 3554 567788889999999999998885 56553 3 2499999999874 577999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCC
Q 007829 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYP 252 (588)
Q Consensus 173 ~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~ 252 (588)
+||.+|+|.|+|++|.||+|||++|++|.+.++..+.. ......+|.+|+++|||+||.|+.-+..++. +.
T Consensus 250 aWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~--~~~qr~~p~~lvl~ptreLalqie~e~~kys-------yn 320 (629)
T KOG0336|consen 250 AWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK--RREQRNGPGVLVLTPTRELALQIEGEVKKYS-------YN 320 (629)
T ss_pred ccceeecCcceEEEEecCCCcCHHHhccceeeeeccch--hhhccCCCceEEEeccHHHHHHHHhHHhHhh-------hc
Confidence 99999999999999999999999999999887765432 2335678999999999999999999888874 45
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcce
Q 007829 253 DLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 332 (588)
Q Consensus 253 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q 332 (588)
+++.++++||.+..++...+++|.+|+++||++|.++...+.+++.++.|||+||||+|+||||++++++|+-.+++++|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccchHHHHHHHHhccCCeEEEecCCCCcc-cceEEEeeehhhHHHHHHHHHHhhc--CCCCEEEEeCccccHHH
Q 007829 333 TLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN-LDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDD 409 (588)
Q Consensus 333 ~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~-~~v~~~~~~~~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~ 409 (588)
+++.|||||+.+..++.+++.+|+.+.++...... ..+.|.+.....+.++..+-.++.. ...++||||.++..++.
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhh
Confidence 99999999999999999999999999998887544 4566666444455566555455544 35699999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCC
Q 007829 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 410 l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g 489 (588)
|...|...|+.+..+||+-+|.+|+.+++.|++|+++||||||+++||||++++.||+|||+|.+++.|+||+||+||+|
T Consensus 481 LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 481 LSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred ccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhccCchh
Q 007829 490 KTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533 (588)
Q Consensus 490 ~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l~~~~~ 533 (588)
++|.+++|++.+ +...+..|.++|+++.|.||+.|..++..+.
T Consensus 561 r~G~sis~lt~~-D~~~a~eLI~ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 561 RTGTSISFLTRN-DWSMAEELIQILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred CCcceEEEEehh-hHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 999999999998 7789999999999999999999999877654
No 7
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-73 Score=548.76 Aligned_cols=361 Identities=37% Similarity=0.613 Sum_probs=338.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
...+|.++++.+.++++++..||..||++|+++||.++.|+|+|+.|.||||||.+|+||+++.++++ ...+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~--------p~~~ 130 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE--------PKLF 130 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC--------CCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999884 2458
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH-cccCCCCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA-KKKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~-~~~~~l~~ 299 (588)
++||++||||||.|+.+.++.+...+ ++++.++.||.++..+...+.+.+||+|||||+|++++. .+.+++..
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i------glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~ 204 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI------GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQ 204 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc------CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHH
Confidence 99999999999999999999998877 999999999999999999999999999999999999999 57899999
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
++|+|+||||+++++.|.+.+..|+..++..+|+++||||||.++..+.+..+.+|+.+.+.........+.|.+.+++.
T Consensus 205 lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 205 LKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred hHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888888889999999988
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007829 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 458 (588)
..|-.+|+..+.+ .+.++||||++...++.++-.|+..|+.+..+||.|+|..|.-+++.|++|..+||||||+++||+
T Consensus 285 k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGL 364 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGL 364 (476)
T ss_pred cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccC
Confidence 8887777777766 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHH
Q 007829 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQE 516 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~ 516 (588)
|+|.|++|||||+|.+..+|+||+||+||+|.+|.+++|++.. +-.....+...+..
T Consensus 365 Dip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqy-Dve~~qrIE~~~gk 421 (476)
T KOG0330|consen 365 DIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQY-DVELVQRIEHALGK 421 (476)
T ss_pred CCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehh-hhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999986 44445555555443
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-69 Score=588.64 Aligned_cols=415 Identities=33% Similarity=0.567 Sum_probs=373.2
Q ss_pred CCCCCCCcc-ccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEE
Q 007829 106 TGWKPPLPI-RRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184 (588)
Q Consensus 106 ~~~~~~~~~-~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi 184 (588)
..|...... ..++..+++.+|+..+|.+.|..+|+|+.+|+++++++.+++.|.+.||..|||+|.++||.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dvi 162 (518)
T PLN00206 83 CFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLL 162 (518)
T ss_pred cCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEE
Confidence 344433333 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcc
Q 007829 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264 (588)
Q Consensus 185 ~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~ 264 (588)
++||||||||++|++|++.++...... ......++++|||+|||+||.|+.+.+..+...+ ++++..++||..
T Consensus 163 v~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~------~~~~~~~~gG~~ 235 (518)
T PLN00206 163 VSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL------PFKTALVVGGDA 235 (518)
T ss_pred EEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC------CceEEEEECCcc
Confidence 999999999999999999887653211 1112367899999999999999999999887654 688899999999
Q ss_pred hHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 265 ~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...+...+..+++|+|+||++|.+++.+....++++++|||||||+|+++||...+..++..++ .+|+++||||+++.+
T Consensus 236 ~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v 314 (518)
T PLN00206 236 MPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEV 314 (518)
T ss_pred hHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHH
Confidence 9888888889999999999999999999888999999999999999999999999999998885 679999999999999
Q ss_pred HHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHH-cCCc
Q 007829 345 QNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLL-KGVE 420 (588)
Q Consensus 345 ~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~-~g~~ 420 (588)
..++..++.+++.+.++.....+..+.+.+.++....+...++..+.. ..+++||||+++..++.+++.|.. .|+.
T Consensus 315 ~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~ 394 (518)
T PLN00206 315 EKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLK 394 (518)
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcc
Confidence 999999999999998887777677777777777766666666666653 346899999999999999999975 6999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcC
Q 007829 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 421 ~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++|||||+|.++++|+||+|||||.|..|.+++|++.
T Consensus 395 ~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~ 474 (518)
T PLN00206 395 ALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNE 474 (518)
T ss_pred eEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHhcCcCchHHhhcc
Q 007829 501 NQSETTLLDLKHLLQEAKQRIPPVLAELN 529 (588)
Q Consensus 501 ~~~~~~~~~l~~~l~~~~~~vp~~l~~l~ 529 (588)
+ +...+.++.+.++.+++.+|++|..+.
T Consensus 475 ~-~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 475 E-DRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred h-HHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 7 677889999999999999999998765
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-70 Score=558.53 Aligned_cols=392 Identities=42% Similarity=0.731 Sum_probs=366.8
Q ss_pred EeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhccc
Q 007829 132 IVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMM 211 (588)
Q Consensus 132 ~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~ 211 (588)
.+.|.++|+++.+|.+-.+.+.+...++..++..|||+|+.+||.+..|+|++++|+||||||.+|++|++.++++....
T Consensus 63 ~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~ 142 (482)
T KOG0335|consen 63 KVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPE 142 (482)
T ss_pred eccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCC--CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHH
Q 007829 212 MPIVPGE--GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289 (588)
Q Consensus 212 ~~~~~~~--~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~ 289 (588)
.+..... .|.+||++||||||.|++++.+++.... .+++..++||.+...+...+.++|+|+|||||+|.++
T Consensus 143 ~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s------~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~ 216 (482)
T KOG0335|consen 143 DRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS------GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDL 216 (482)
T ss_pred cCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc------cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhh
Confidence 4433333 5999999999999999999999997644 8999999999999999999999999999999999999
Q ss_pred HHcccCCCCCcceeeecCCccccc-CCCHHHHHHHHHhhhh----cceEEEEeeccchHHHHHHHHhccC-CeEEEecCC
Q 007829 290 LAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRA 363 (588)
Q Consensus 290 l~~~~~~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~----~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~ 363 (588)
+..+.+.+..|+|+|+||||+|+| ++|+++++.|+..... .+|++|||||+|..++.++..++.+ .+.+.++..
T Consensus 217 ~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv 296 (482)
T KOG0335|consen 217 IERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV 296 (482)
T ss_pred hhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee
Confidence 999999999999999999999999 9999999999998754 7899999999999999999998886 899999999
Q ss_pred CCcccceEEEeeehhhHHHHHHHHHHhhcCC----------CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHH
Q 007829 364 GAANLDVIQEVEYVKQEAKIVYLLECLQKTP----------PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEER 433 (588)
Q Consensus 364 ~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~----------~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r 433 (588)
+..+.++.|.+.++....+...|++.+.... .+++|||++++.|+.++..|...++++..+||..+|.+|
T Consensus 297 g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 297 GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 9999999999999999999999999887422 279999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHH
Q 007829 434 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 434 ~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
..+++.|++|++.|||||++++||||+|+|+||||||+|.+..+|+||||||||.|+.|.++.|++.. +......|.++
T Consensus 377 ~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~-~~~i~~~L~~~ 455 (482)
T KOG0335|consen 377 EQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK-NQNIAKALVEI 455 (482)
T ss_pred HHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc-cchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999955 77899999999
Q ss_pred HHHhcCcCchHHhhccC
Q 007829 514 LQEAKQRIPPVLAELND 530 (588)
Q Consensus 514 l~~~~~~vp~~l~~l~~ 530 (588)
+.+++|.+|+||.++..
T Consensus 456 l~ea~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 456 LTEANQEVPQWLSELSR 472 (482)
T ss_pred HHHhcccCcHHHHhhhh
Confidence 99999999999998544
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-70 Score=546.76 Aligned_cols=360 Identities=36% Similarity=0.575 Sum_probs=328.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..+|.+|+|+.++++++...||..|||||..+||.++-|+|++.+|.||||||.+|++|+|..++..... ....+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----Cccee
Confidence 4589999999999999999999999999999999999999999999999999999999999988763221 34568
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCCCCCc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMNLDNC 300 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-~~~~l~~~ 300 (588)
||||||||+|+.|++.+.++++... +|.++++.||.+.+.|-..++..+||||||||||+|++.+ ..++++++
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt------~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT------DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc------cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccce
Confidence 9999999999999999999998765 8999999999999999999999999999999999999987 47899999
Q ss_pred ceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh-
Q 007829 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ- 379 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~- 379 (588)
.++|+||||+|++.||.+++..|++.++..+|+++|||||+..+.+++.-.|.+|+.+.+.........+.|++..+..
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~ 408 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPK 408 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988888888888876652
Q ss_pred --HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007829 380 --EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 380 --~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 456 (588)
..+-..+..++.. ....+|||+.|++.|.++.-.|-..|+.+.-+||.++|.+|.+.++.|++++++||||||+++|
T Consensus 409 re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsR 488 (691)
T KOG0338|consen 409 REGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASR 488 (691)
T ss_pred cccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhc
Confidence 1222223333333 3568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHH
Q 007829 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
||||++|.+||||+||.+++.|+||+|||.|+|+.|.+++|+.++ +...+..+...
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccc-cHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998 66666666554
No 11
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-69 Score=585.49 Aligned_cols=427 Identities=39% Similarity=0.645 Sum_probs=400.7
Q ss_pred cCCcccCCCcCCCCCCCccccCCHHHHHHHHHhcC-eEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHH
Q 007829 96 KGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGL 174 (588)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i 174 (588)
..+.|+++-+++|....++.+|+.++++.+|.... |.+.|.++|.|+.+|.+.+++..++..+++.||.+|+|||.+||
T Consensus 317 S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAi 396 (997)
T KOG0334|consen 317 SKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAI 396 (997)
T ss_pred ccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhc
Confidence 46666666666677889999999999999999986 99999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCc
Q 007829 175 PVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDL 254 (588)
Q Consensus 175 ~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i 254 (588)
|+|++|+|+|++|.||||||++|+||++.++.. ..+...+.||.+|||+|||+||.|+++.+..|+..+ ++
T Consensus 397 P~ImsGrdvIgvakTgSGKT~af~LPmirhi~d---Qr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l------~i 467 (997)
T KOG0334|consen 397 PAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKD---QRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL------GI 467 (997)
T ss_pred chhccCcceEEeeccCCccchhhhcchhhhhhc---CCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc------Cc
Confidence 999999999999999999999999999976654 456667889999999999999999999999999887 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc---CCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcc
Q 007829 255 RTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQR 331 (588)
Q Consensus 255 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~---~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~ 331 (588)
++++++||.....++..+++|+.|+|||||+++|++..+. .++.++.|||+||||+|+++||.+++..|+..+++.+
T Consensus 468 r~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdr 547 (997)
T KOG0334|consen 468 RVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDR 547 (997)
T ss_pred eEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhh
Confidence 9999999999999999999999999999999999998654 4567777999999999999999999999999999999
Q ss_pred eEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh-hHHHHHHHHHHhhc--CCCCEEEEeCccccHH
Q 007829 332 QTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQK--TPPPVLIFCENKADVD 408 (588)
Q Consensus 332 q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~-~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~ 408 (588)
|+++||||+|..+..+++..+..|+.+.++..+..+.++.|.+..+. ...|+..|++.|.. ...++||||.+...|+
T Consensus 548 QtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 548 QTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKAD 627 (997)
T ss_pred hhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHH
Confidence 99999999999999999999999999999999899999999999988 88899999988865 4679999999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCC
Q 007829 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 409 ~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~ 488 (588)
.+.+.|.+.|+.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|++++.+|||||+|...++|+||.|||||+
T Consensus 628 ~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgra 707 (997)
T KOG0334|consen 628 ALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRA 707 (997)
T ss_pred HHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhccCch
Q 007829 489 GKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPM 532 (588)
Q Consensus 489 g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l~~~~ 532 (588)
|++|.|++|+.+. +..+..+|.+.+...++.+|..|..|...+
T Consensus 708 grkg~AvtFi~p~-q~~~a~dl~~al~~~~~~~P~~l~~l~~~f 750 (997)
T KOG0334|consen 708 GRKGAAVTFITPD-QLKYAGDLCKALELSKQPVPKLLQALSERF 750 (997)
T ss_pred CccceeEEEeChH-HhhhHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 9999999999995 788999999999999999999998887664
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-68 Score=573.64 Aligned_cols=364 Identities=41% Similarity=0.686 Sum_probs=333.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.+++++.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|++..+.... ......+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVSA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCce
Confidence 6899999999999999999999999999999999999999999999999999999999999965320 0111129
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
||++||||||.|+++.+..+.... +++++.+++||.+...+...+.++++|||+||+||+|++.++.+.++.+.+
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~-----~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNL-----GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhc-----CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999999998754 168899999999999999999999999999999999999999999999999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCC--cccceEEEeeehhhH
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA--ANLDVIQEVEYVKQE 380 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~--~~~~v~~~~~~~~~~ 380 (588)
+|+||||+|+++||.+++..|+..++.++|+++||||+|..+..+++.++.+|..+.+..... ....+.|.+..+...
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCH
Confidence 999999999999999999999999999999999999999999999999999999888875554 778899999888876
Q ss_pred H-HHHHHHHHhhcCC-CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007829 381 A-KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 381 ~-k~~~ll~~l~~~~-~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 458 (588)
. ++..|...+.... .++||||+++..++.++..|...|+.+..+||+++|++|.++++.|++|+.+||||||+++|||
T Consensus 258 ~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 258 EEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 5 8888888777643 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHh
Q 007829 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA 517 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~ 517 (588)
|+|+|++|||||+|.+++.|+||+|||||+|..|.+++|+++..+...+..+.+.+...
T Consensus 338 Di~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 338 DIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999854666777777776544
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-67 Score=488.20 Aligned_cols=375 Identities=31% Similarity=0.548 Sum_probs=345.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCC
Q 007829 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGE 218 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 218 (588)
-.++.+|++|++.+++++++...||++|+.+|+.||+.++.|+|+|+.|..|+|||.+|.+.+++.+-- ..+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~--------~~r 94 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI--------SVR 94 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc--------ccc
Confidence 347789999999999999999999999999999999999999999999999999999998888765422 124
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCC
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLD 298 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~ 298 (588)
...+||+.||||||.|+.+.+..+..++ ++.+..++||.+..+.+..+..|.|++.+|||++.+++.+..+..+
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~m------nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr 168 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYM------NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTR 168 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccc------cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccc
Confidence 5689999999999999999999998877 9999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK 378 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~ 378 (588)
.++++|+||||.|++.||..++-.+++.+++..|++++|||+|..+.+....++.+|+.+.+.+.+.....+.|.+..+.
T Consensus 169 ~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred ceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888887777
Q ss_pred hHH-HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007829 379 QEA-KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 379 ~~~-k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 456 (588)
.+. |+..|...... +-.+.+|||+|+..++.|.+.++...+.+.++||+|+|++|..++..|++|+.+||++||+-+|
T Consensus 249 ~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaR 328 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWAR 328 (400)
T ss_pred hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhc
Confidence 665 77777765543 3458999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhc
Q 007829 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l 528 (588)
|+|+|.|++|||||+|.+.+.|+|||||.||.|++|.++-|+..+ +-..+.++.+.+......+|-.++++
T Consensus 329 GiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~-d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 329 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred cCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHH-HHHHHHHHHHHHhhhcccccchhhhc
Confidence 999999999999999999999999999999999999999999887 67788888888888777777665543
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-63 Score=530.87 Aligned_cols=363 Identities=34% Similarity=0.539 Sum_probs=323.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
-.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..++..... ......+++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~-~~~~~~~~~ 85 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP-EDRKVNQPR 85 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc-cccccCCce
Confidence 3589999999999999999999999999999999999999999999999999999999999988753211 111134689
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
+|||+||++||.|+++.+..+.... ++++..++||.+...+...+..+++|+|+||++|.+++....+.++.++
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~------~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQAT------GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 9999999999999999999998755 7899999999988888888888999999999999999998889999999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhh--cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
+|||||||+|++++|...+..++..++. .+++++||||++..+..++...+.+|..+.+.........+.+.+.+...
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~ 239 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN 239 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH
Confidence 9999999999999999999999999874 56789999999999999999999999888877665555666666667667
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007829 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 458 (588)
..+...+...+.. ...++||||+++..|+.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++||
T Consensus 240 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 240 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 7777777777655 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHH
Q 007829 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
|+|++++|||||+|.+++.|+||+||+||.|+.|.+++|+++. +...+..+.+
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~-~~~~~~~i~~ 372 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE-YALNLPAIET 372 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 3334444433
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.7e-65 Score=506.55 Aligned_cols=362 Identities=35% Similarity=0.577 Sum_probs=328.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
...|++..|++..+++++.+||..+|++|...|+.++.|+|+++.|.||||||++|++|++..++... +.+.++..
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~----~~~r~~~~ 156 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK----FKPRNGTG 156 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcc----cCCCCCee
Confidence 45688899999999999999999999999999999999999999999999999999999999988753 33457788
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNC 300 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-~~~l~~~ 300 (588)
+|||||||+||.|++.+++.+.... +.+.+..++||++.......+.+++.|+|||||||.|++.+. .+....+
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h-----~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~ 231 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYH-----ESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNL 231 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhC-----CCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcc
Confidence 9999999999999999999998653 478999999999999998999999999999999999999974 5567778
Q ss_pred ceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccC-CeEEEecCCC--CcccceEEEeeeh
Q 007829 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRAG--AANLDVIQEVEYV 377 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~--~~~~~v~~~~~~~ 377 (588)
+++|+||||+++++||+..+..|+..++.++|+++||||.|++++++++..+.. |+.+++...+ .....+.|-+...
T Consensus 232 k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~ 311 (543)
T KOG0342|consen 232 KCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVA 311 (543)
T ss_pred ceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEec
Confidence 999999999999999999999999999999999999999999999999988875 7777765444 4455677777777
Q ss_pred hhHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007829 378 KQEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 455 (588)
....++..+..+|++. ..++||||+|...+..+++.|....++|..+||+++|..|..+..+|++.+.-||||||+++
T Consensus 312 ~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA 391 (543)
T KOG0342|consen 312 PSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA 391 (543)
T ss_pred cccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh
Confidence 7777788888888764 36999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHH
Q 007829 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
||+|+|+|++||+||+|.++++|+||+|||||.|..|.++.|+.+. +..++..|+++
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~-El~Flr~LK~l 448 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPW-ELGFLRYLKKL 448 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChh-HHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999998 66677776633
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-63 Score=490.00 Aligned_cols=351 Identities=34% Similarity=0.575 Sum_probs=314.4
Q ss_pred CCCCCCCC--CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 143 KNFKDMRF--PEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 143 ~~f~~~~l--~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
.+|++++. +++++.++...||..+||+|..+||.+++++|+++-++||||||++|++|++..+.......+ ..--
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~---~~~v 80 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP---PGQV 80 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC---ccce
Confidence 35666654 499999999999999999999999999999999999999999999999999998865432111 0123
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHccc--CCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKK--MNL 297 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~--~~l 297 (588)
.+|||+||||||.|+.+.+..|...+ +++++.+++||....+.+..++ .++.|+|||||||.+++.+.. +++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l-----~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~ 155 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHL-----PNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSF 155 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhh-----hccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccc
Confidence 58999999999999999999998874 6899999999999988887775 578999999999999999854 445
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCC--cccceEEEee
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA--ANLDVIQEVE 375 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~--~~~~v~~~~~ 375 (588)
.++.++|+||||++++|||...++.|++.+|.+|++-+||||....+.++.+..+.+|+.+.++.... ....+...+.
T Consensus 156 rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 156 RSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred cccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceee
Confidence 59999999999999999999999999999999999999999999999999999999999999887664 4444555666
Q ss_pred ehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 376 YVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 376 ~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
.+....|+..+++++.. ...++|||.+|...++.....|... .+++..+||.|++..|..++..|+...-.||+|||
T Consensus 236 v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred EecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 67888899999999877 4679999999999999999888654 78899999999999999999999998889999999
Q ss_pred ccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+++||||||+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEeccc
Confidence 9999999999999999999999999999999999999999999999986
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.4e-62 Score=525.21 Aligned_cols=363 Identities=39% Similarity=0.639 Sum_probs=324.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+|++++|++.++++|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|++..+...... ......+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEE
Confidence 68999999999999999999999999999999999999999999999999999999999987653211 1112345899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~l 303 (588)
||+||++||.|+.+.+..+...+ ++++..++||.+...+...+..+++|+|+||++|.+++....+.++++++|
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~------~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL------NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC------CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 99999999999999999997654 789999999999988888888889999999999999999888899999999
Q ss_pred eecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHH
Q 007829 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383 (588)
Q Consensus 304 IvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~ 383 (588)
||||||+|++++|...++.++..++..+|+++||||+++.+..++..++.+|..+.+.........+.+.+.++....+.
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887766655566677777777766665
Q ss_pred HHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC
Q 007829 384 VYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 384 ~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~ 462 (588)
..+...+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~ 313 (456)
T PRK10590 234 ELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 313 (456)
T ss_pred HHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCccc
Confidence 555555544 3468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHH
Q 007829 463 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 463 v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
+++||||++|.++++|+||+|||||.|..|.+++|++.+ +...+..+...+.
T Consensus 314 v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~-d~~~~~~ie~~l~ 365 (456)
T PRK10590 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVD-EHKLLRDIEKLLK 365 (456)
T ss_pred CCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHH-HHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999887 5555666555543
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9e-62 Score=522.86 Aligned_cols=357 Identities=36% Similarity=0.587 Sum_probs=322.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..+... ..++++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--------~~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--------RFRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--------cCCceE
Confidence 579999999999999999999999999999999999999999999999999999999999886432 235689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
||++||++||.|+.+.++.+.... +++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~-----~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFI-----PNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNT 150 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCE
Confidence 999999999999999999886532 478899999999999999999999999999999999999998888999999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHH
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k 382 (588)
||+||||+|++++|...+..++..++..+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.+..+....+
T Consensus 151 lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k 229 (460)
T PRK11776 151 LVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDER 229 (460)
T ss_pred EEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999888776543 33446666666666667
Q ss_pred HHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007829 383 IVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 383 ~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip 461 (588)
+..+...+.. .+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 230 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 230 LPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchh
Confidence 7777777755 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
++++||+||+|.+++.|+||+|||||.|+.|.+++|+++. +...+..+.+.+
T Consensus 310 ~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~-e~~~~~~i~~~~ 361 (460)
T PRK11776 310 ALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPE-EMQRANAIEDYL 361 (460)
T ss_pred cCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchh-HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887 444555555544
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-61 Score=529.10 Aligned_cols=364 Identities=35% Similarity=0.555 Sum_probs=323.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..++...... .....++++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceE
Confidence 4799999999999999999999999999999999999999999999999999999999999886532110 011236899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCcc
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-~~~l~~~~ 301 (588)
|||+||++||.|+++.+..++..+ ++++..++||.+...+...+..+++|+|+||++|.+++.+. .+.+..++
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~------~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~ 161 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL------GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhhee
Confidence 999999999999999999998765 78999999999998888888888999999999999998775 46789999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhh--cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
+|||||||+|++++|...+..++..++. .+|+++||||++..+..+...++..|..+.+.........+.+.+.....
T Consensus 162 ~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 162 ICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD 241 (572)
T ss_pred eeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH
Confidence 9999999999999999999999999886 78999999999999999999999988777666555555667777777777
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007829 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 458 (588)
..++..++..+.. ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 242 ~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 242 EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 7788778777765 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
|+|++++|||||+|.+++.|+||+||+||.|..|.+++|+++. +...+.++.+.+
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~i~~~~ 376 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPDIEAYI 376 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 444455554443
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-61 Score=532.07 Aligned_cols=355 Identities=36% Similarity=0.578 Sum_probs=322.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|++..+... ..+++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--------~~~~~ 76 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--------LKAPQ 76 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--------cCCCe
Confidence 3479999999999999999999999999999999999999999999999999999999999876442 24689
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
+|||+||++||.|+++.+..+...+ ++++++.++||.+...+...+..+++|||+||++|.+++.++.+.+++++
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~-----~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~ 151 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHM-----RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLS 151 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhc-----CCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 9999999999999999999987643 47889999999999888888889999999999999999999889999999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHH
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~ 381 (588)
+|||||||.|++++|...+..++..++..+|+++||||+|+.+..+++.++.+|..+.+.........+.+.+..+....
T Consensus 152 ~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~ 231 (629)
T PRK11634 152 GLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR 231 (629)
T ss_pred EEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhh
Confidence 99999999999999999999999999999999999999999999999999999988877766555666777766666667
Q ss_pred HHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC
Q 007829 382 KIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF 460 (588)
Q Consensus 382 k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDi 460 (588)
+...+...+... ..++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 232 k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi 311 (629)
T PRK11634 232 KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 311 (629)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc
Confidence 777777776553 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHH
Q 007829 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDL 510 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l 510 (588)
|+|++|||||+|.+++.|+||+|||||.|+.|.+++|+++. +...+..+
T Consensus 312 p~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~-e~~~l~~i 360 (629)
T PRK11634 312 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR-ERRLLRNI 360 (629)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechH-HHHHHHHH
Confidence 99999999999999999999999999999999999999876 33344443
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-63 Score=473.15 Aligned_cols=346 Identities=35% Similarity=0.544 Sum_probs=309.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..+|+.+++++++.+.|+.+|+.+|||+|..+||.||.|+|+|++|.||||||.+|.+|+++.+.+. ..|-+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed--------P~giF 77 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED--------PYGIF 77 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC--------CCcce
Confidence 4689999999999999999999999999999999999999999999999999999999999988664 36889
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc----cCCC
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK----KMNL 297 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~----~~~l 297 (588)
++|+.|||+||.|+.+.|..+.+.+ ++++.+++||.++-.+...+.+.+|+||+||||+.+++..+ ...+
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l------~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~ 151 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLL------NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIF 151 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccc------cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhh
Confidence 9999999999999999999998877 99999999999999999999999999999999999999876 3458
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeE--EEecCCCCcccceEEEee
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVT--VNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~--i~~~~~~~~~~~v~~~~~ 375 (588)
++++++|+||||++++..|.+.+..+++.+|..+|+++||||+++.+..+..-...++.. +.............|.+.
T Consensus 152 ~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 152 QRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred hceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 899999999999999999999999999999999999999999998877766544444322 222222233334556666
Q ss_pred ehhhHHHHHHHHHHhhc----CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc
Q 007829 376 YVKQEAKIVYLLECLQK----TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT 451 (588)
Q Consensus 376 ~~~~~~k~~~ll~~l~~----~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT 451 (588)
.++...+-.|+...|.. ....++||+++...|+.++..|...++.++.+||.|+|.+|..++.+|+++..+|||||
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 67766666666666543 35689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 452 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 452 ~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|+++||+|||.|++|||||+|.+|.+|+||+||++|+|+.|.++.|++..
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~r 361 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQR 361 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechh
Confidence 99999999999999999999999999999999999999999999999976
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-62 Score=494.64 Aligned_cols=360 Identities=35% Similarity=0.559 Sum_probs=329.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+..|.+++++...+++|++.+|..||.+|.++||.+|.|+|+++.|.||||||++|++|++..++...+ .+..|--
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW----s~~DGlG 143 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW----SPTDGLG 143 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC----CCCCCce
Confidence 457999999999999999999999999999999999999999999999999999999999999987654 3456778
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNC 300 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-~~~l~~~ 300 (588)
+|||.|||+||.|+++.+.+.+... .+.+++++||.+.......+. +++|+|||||||+.++..+ .++.+++
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h------~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHH------DFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhcc------ccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 9999999999999999999998765 899999999998877666554 4899999999999998865 6788899
Q ss_pred ceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCC--CCcccceEEEeeehh
Q 007829 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA--GAANLDVIQEVEYVK 378 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~--~~~~~~v~~~~~~~~ 378 (588)
.++|+||||+|++|||...+..|++.++..+|+++||||.+..+.++++-.+.+|..|.+... .+...+..|.+..+.
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999887632 345567788888889
Q ss_pred hHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007829 379 QEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 455 (588)
.+.++..|..++..+ ..++|||+.|.+.+..+++.+... |++..++||+|+|..|..+...|...+.-||+|||+++
T Consensus 297 l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~a 376 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAA 376 (758)
T ss_pred hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhh
Confidence 999999999999875 558999999999999999999765 99999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHH
Q 007829 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
||+|||.|++||.+|+|.++++|+||+||++|.+..|.+++++.+...+..+..|..
T Consensus 377 RGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 377 RGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred ccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999965666665544
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-64 Score=474.29 Aligned_cols=366 Identities=30% Similarity=0.542 Sum_probs=334.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
..|+++.|...++..+.++||.+|+|+|.++||.+++|+|+++-|..|+|||.+|++|++..+-.. ...-.+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--------~~~IQ~ 156 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--------KNVIQA 156 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--------ccceeE
Confidence 479999999999999999999999999999999999999999999999999999999999876432 356689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
+|++|||+||.|+...+..+.+++ ++.+...+||++..+.+-.+...+|++|+||||++|+..++--.++.|.+
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~------~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~ 230 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHL------GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVI 230 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhccc------CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceE
Confidence 999999999999999999999887 89999999999999999999999999999999999999999889999999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHH
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k 382 (588)
+|+||||.+++..|...+..++..+|..+|++++|||+|-.+..|..+++.+|..++.-.. .....+.|.+.++.+..|
T Consensus 231 lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qK 309 (459)
T KOG0326|consen 231 LVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQK 309 (459)
T ss_pred EEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhh
Confidence 9999999999999999999999999999999999999999999999999999999887544 566788999999999888
Q ss_pred HHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007829 383 IVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 383 ~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip 461 (588)
+..|-..+.+ .-.+.|||||+.+.++.++..+.+.|+.+..+|+.|.|+.|.++...|++|.++.|||||.+.||||++
T Consensus 310 vhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 310 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccc
Confidence 7666555444 345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchH
Q 007829 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~ 524 (588)
++++|||||+|++.+.|+||+||+||.|+.|.|+.+++.+ +...+..+..-|......+|+.
T Consensus 390 avNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLitye-drf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 390 AVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYE-DRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred eeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehh-hhhhHHHHHHHhccccccCCCc
Confidence 9999999999999999999999999999999999999988 4445555555555555555544
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-60 Score=506.82 Aligned_cols=360 Identities=34% Similarity=0.564 Sum_probs=319.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+|+++++++.+++.|.+.||..|+++|.++|+.++.|+|++++||||+|||++|++|++.++... +.....++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~----~~~~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDF----PRRKSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhc----cccCCCCceEE
Confidence 69999999999999999999999999999999999999999999999999999999999988652 11123457899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~l 303 (588)
|++||++||.|+++.+..+.... ++++..++||.....+...+..+++|+|+||++|.+++..+.+.+.++++|
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~------~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHT------HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccC------CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 99999999999999999998655 789999999999988888888889999999999999999988889999999
Q ss_pred eecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccch-HHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh-HH
Q 007829 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT-KIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ-EA 381 (588)
Q Consensus 304 IvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~-~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~-~~ 381 (588)
||||||+|++++|...+..+...++..+|+++||||++. .+..+...++.+|+.+...........+.+.+..... ..
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 231 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEH 231 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHH
Confidence 999999999999999999999999888999999999985 5788888888899888776665555566666555543 44
Q ss_pred HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC
Q 007829 382 KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF 460 (588)
Q Consensus 382 k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDi 460 (588)
+...+...+.. ...++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 232 k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 232 KTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 55555555554 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
|++++|||||+|.+...|+||+||+||.|..|.+++|+... +...+..+.+++
T Consensus 312 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~-d~~~~~~i~~~~ 364 (434)
T PRK11192 312 DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAH-DHLLLGKIERYI 364 (434)
T ss_pred CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 455555555444
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-61 Score=479.96 Aligned_cols=363 Identities=33% Similarity=0.562 Sum_probs=316.5
Q ss_pred CCCCCCCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 142 IKNFKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
-..|..++|++.+...|... +|..||.+|.++||.+++|+|+++-++||||||++|++|+++.+...+. ......|+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~ 212 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGP 212 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCc
Confidence 45799999999999999987 9999999999999999999999999999999999999999999877542 33456899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCCCCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-~~~~l~~ 299 (588)
.+|||+||||||.|+|+.++++.+++ ..|-.+.+.||.........+++|+.|+|+|||||.|+|.+ ..+.+++
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~-----hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPF-----HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCc-----eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 99999999999999999999998764 36677889999999888899999999999999999999987 5678899
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhh-------------hcceEEEEeeccchHHHHHHHHhccCCeEEEecCC---
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFK-------------AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA--- 363 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~-------------~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~--- 363 (588)
+++||+||||+++++||+.++..|++.+. .+.|.+++|||++..+..++...+.+|+.|..+..
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 99999999999999999999999998772 24688999999999999999999999998872211
Q ss_pred ----------------------CCcccceEEEeeehhhHHHHHHHHHHhhc-----CCCCEEEEeCccccHHHHHHHHHH
Q 007829 364 ----------------------GAANLDVIQEVEYVKQEAKIVYLLECLQK-----TPPPVLIFCENKADVDDIHEYLLL 416 (588)
Q Consensus 364 ----------------------~~~~~~v~~~~~~~~~~~k~~~ll~~l~~-----~~~~viIF~~s~~~~~~l~~~L~~ 416 (588)
........|++..++...++..|...|.+ ...++|||+.+...++.-+..|..
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 11223456667777777788777776654 245899999999999988888754
Q ss_pred c----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC
Q 007829 417 K----------------------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474 (588)
Q Consensus 417 ~----------------------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s 474 (588)
. +..+..+||+|+|++|..+++.|...+-.||+|||+++||+|+|+|++||.||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 2 345788999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHH
Q 007829 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 475 ~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
+++|+||+|||+|+|.+|.++.|+.+. +..++..|+.
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~-Eaey~~~l~~ 564 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPS-EAEYVNYLKK 564 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEeccc-HHHHHHHHHh
Confidence 999999999999999999999999998 4446555543
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-58 Score=500.40 Aligned_cols=367 Identities=34% Similarity=0.529 Sum_probs=320.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
....|.++++++.+.++|.+.||..||++|.++|+.+++|+|+|+++|||||||++|++|++..+....... ......+
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-~~~~~~~ 163 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-ERYMGEP 163 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc-ccccCCc
Confidence 455789999999999999999999999999999999999999999999999999999999999887632100 0011257
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCCCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~l~~ 299 (588)
++|||+||++||.|+++.+..+...+ ++++..++||.+...+...+. ..++|+|+||++|.+++.++...+++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~------~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~ 237 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT------GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDM 237 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC------CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCccccc
Confidence 99999999999999999999997655 788999999988877777665 46899999999999999888888999
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhh--cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeeh
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~ 377 (588)
+++|||||||++.+++|...++.++..++. .+|++++|||++..+.+++..++.+|..+.+.........+.+.+..+
T Consensus 238 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 317 (475)
T PRK01297 238 VEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAV 317 (475)
T ss_pred CceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEe
Confidence 999999999999999999999999998854 579999999999999999999999998887766655555666666666
Q ss_pred hhHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007829 378 KQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 456 (588)
....+...+...+... ..++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++
T Consensus 318 ~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~ 397 (475)
T PRK01297 318 AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGR 397 (475)
T ss_pred cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Confidence 6666666666655543 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHH
Q 007829 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
|||+|++++||+|++|.|+.+|+||+||+||.|..|.+++|+.++ +...+..+..++.
T Consensus 398 GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~~~~~~~~~~~~ 455 (475)
T PRK01297 398 GIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED-DAFQLPEIEELLG 455 (475)
T ss_pred CCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH-HHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999876 4445566555543
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-59 Score=460.96 Aligned_cols=368 Identities=29% Similarity=0.479 Sum_probs=325.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|++++|.+.+++++.+.||.+||.+|..+||.+|.|+|+++-|.||||||.+|++|+++.++...... ....|+.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 5899999999999999999999999999999999999999999999999999999999999999865433 44678999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc-CCCCCcc
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~-~~l~~~~ 301 (588)
+|++||+|||+|++..+.++...+. ..++++-+..+.+.......+...++|||+||+++..++..+. ..+..++
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~----k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~ 172 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCS----KDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLS 172 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHH----HhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhhee
Confidence 9999999999999999999876652 2566666666666666667788889999999999999999876 6788999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCccc-ceEEEeeehhhH
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL-DVIQEVEYVKQE 380 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~-~v~~~~~~~~~~ 380 (588)
++|+||||.++..||++++..+.+++|+..|.++||||+...++.+-+.++.+|+.+........+. .+.|....+..+
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~ 252 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE 252 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999988877665544 455666667777
Q ss_pred HHHHHHHHHhh--cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----
Q 007829 381 AKIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV----- 453 (588)
Q Consensus 381 ~k~~~ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~----- 453 (588)
+++..+...++ -..+++|||+|++..|.++.-.|...|+...+++|.++..-|..++++|+.|-++++||||.
T Consensus 253 DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~ 332 (569)
T KOG0346|consen 253 DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGD 332 (569)
T ss_pred hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchh
Confidence 88766655544 35789999999999999999999999999999999999999999999999999999999992
Q ss_pred ------------------------------cccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCC
Q 007829 454 ------------------------------ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 454 ------------------------------~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~ 503 (588)
.+|||||.+|.+|||||+|.+...|+||+|||+|+|++|.+++|+.+. +
T Consensus 333 ~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~-e 411 (569)
T KOG0346|consen 333 KLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK-E 411 (569)
T ss_pred hhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch-H
Confidence 579999999999999999999999999999999999999999999998 4
Q ss_pred hhHHHHHHHHHHHh
Q 007829 504 ETTLLDLKHLLQEA 517 (588)
Q Consensus 504 ~~~~~~l~~~l~~~ 517 (588)
......+..++...
T Consensus 412 ~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 412 EFGKESLESILKDE 425 (569)
T ss_pred HhhhhHHHHHHhhH
Confidence 44446666666553
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.9e-57 Score=477.65 Aligned_cols=358 Identities=32% Similarity=0.584 Sum_probs=311.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|++++||||||||++|++|++..+... ..+++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--------LNACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--------CCCce
Confidence 4689999999999999999999999999999999999999999999999999999999999876321 24678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
+|||+||++|+.|+.+.+..++... .+.+..+.|+.....+...+..+++|+|+||++|.+++.+....+++++
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~ 172 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL------KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLK 172 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc------CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCccccccc
Confidence 9999999999999999999987644 6788888999888888888888899999999999999998888899999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh-H
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ-E 380 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~-~ 380 (588)
+||+||||++.+++|...+..++..++...|++++|||+|+.+..+...++..|..+.+.........+.+.+..... .
T Consensus 173 lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PTZ00424 173 LFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE 252 (401)
T ss_pred EEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH
Confidence 999999999999999999999999999999999999999999999999999888776655444333444444444433 2
Q ss_pred HHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007829 381 AKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 381 ~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlD 459 (588)
.+...+...+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|
T Consensus 253 ~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiD 332 (401)
T PTZ00424 253 WKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGID 332 (401)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcC
Confidence 344444444443 3568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 460 ip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
+|++++||+||+|.+...|+||+||+||.|+.|.|++|++++ +...+..+.+.+
T Consensus 333 ip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~e~~~ 386 (401)
T PTZ00424 333 VQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPD-DIEQLKEIERHY 386 (401)
T ss_pred cccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876 444444443333
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-59 Score=469.03 Aligned_cols=371 Identities=32% Similarity=0.502 Sum_probs=301.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCC-----
Q 007829 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMP----- 213 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~----- 213 (588)
.-+..|.++++|..++++|...||..||+||...||.+..| .|+++.|.||||||++|-+|++..+.+......
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567999999999999999999999999999999999999 799999999999999999999995544321110
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc
Q 007829 214 IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 214 ~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~ 293 (588)
......+.+||++||||||.|+...+...+. ++++++..++||.....|-+.+...++|||||||||+.++..+
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~------~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAE------KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhcc------ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh
Confidence 1112234599999999999999999999987 4599999999999999999999999999999999999999876
Q ss_pred cC---CCCCcceeeecCCcccccCCCHHHHHHHHHhhh-----hcceEEEEeeccchH---------------------H
Q 007829 294 KM---NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-----AQRQTLLFSATMPTK---------------------I 344 (588)
Q Consensus 294 ~~---~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~-----~~~q~l~~SAT~~~~---------------------i 344 (588)
.. +++.++++|+||||||+..|+-..+..++..+. .++|++.||||++-. +
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ki 411 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKI 411 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHH
Confidence 44 577889999999999999998899999988875 468999999998422 2
Q ss_pred HHHHHHh--ccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEE
Q 007829 345 QNFARSA--LVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV 422 (588)
Q Consensus 345 ~~~~~~~--l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~ 422 (588)
+.+++.. ..+|.++...+.......+......++...+-.++.-+|...++++|||||++..+.+|+-+|...+++..
T Consensus 412 q~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 412 QHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 3333322 23454444443322221111111111222222223333455688999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 423 AVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 423 ~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
.+|+.|.|..|...++.|++....||||||+++||+|||+|+|||||-.|.+.+.|+||.|||+|++..|+.+.|+.+.
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~- 570 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ- 570 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHh
Q 007829 503 SETTLLDLKHLLQEA 517 (588)
Q Consensus 503 ~~~~~~~l~~~l~~~ 517 (588)
+...+..|.+-|...
T Consensus 571 e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 571 EVGPLKKLCKTLKKK 585 (731)
T ss_pred HhHHHHHHHHHHhhc
Confidence 455556665555443
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-56 Score=436.83 Aligned_cols=368 Identities=32% Similarity=0.590 Sum_probs=334.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|++|+|++.+++.++..||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++.+-. +.....+
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--------~~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--------SVKETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--------chHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999987622 1245679
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-KRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
|+++|||+||.|+......++... +.++..+.||.+...+...+ ..+++|+|+||+++.+++....+....++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~------~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iK 171 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHM------DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIK 171 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhccc------ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccccccee
Confidence 999999999999999999987765 88899999998887554444 45689999999999999999988899999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHH
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~ 381 (588)
++|+||||.|+..||.+++..++++++...|++++|||+|..+....+.++.+|+.+.+...+.....+.|.+..+..+.
T Consensus 172 mfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~ 251 (397)
T KOG0327|consen 172 MFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE 251 (397)
T ss_pred EEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988888788888888888888
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007829 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip 461 (588)
|+..+..+.. .-.+.+||||++..++.+...|...++.+.++||.|.+.+|..+++.|++|..+|||.|+.++||+|+.
T Consensus 252 k~~~l~dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 252 KLDTLCDLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred cccHHHHHHH-hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 8888888777 666899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHh
Q 007829 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 526 (588)
.+..||||++|...++|+||+||+||.|.+|.++.|++.. +.+.+.++.+++......+|....
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~-d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEE-DVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHh-hHHHHHhHHHhcCCcceecccchh
Confidence 9999999999999999999999999999999999999988 566666666666555555555443
No 31
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-56 Score=453.98 Aligned_cols=401 Identities=31% Similarity=0.497 Sum_probs=348.3
Q ss_pred HHHHHHhcCeEeecCCCCCCCCCCCC----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 122 CDLIRKQWHIIVDGEDIPPPIKNFKD----MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 122 ~~~~r~~~~i~v~g~~~p~p~~~f~~----~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
....|+.+.+.+.|.++|+|+.+|.+ ....+.+++.+...+|..|+|+|++++|.++.++|++.|||||||||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 34568889999999999999999998 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH-HHHHHhcCC
Q 007829 198 VLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS-QLEVVKRGV 276 (588)
Q Consensus 198 ~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~-~~~~l~~~~ 276 (588)
.+|++.++..... .....|-+++|+.||++||.|++.++.++...- ..++++........... ........+
T Consensus 191 ~~Pil~~L~~~~~---~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~----~t~~~a~~~~~~~~~~qk~a~~~~~k~ 263 (593)
T KOG0344|consen 191 NLPILQHLKDLSQ---EKHKVGLRALILSPTRELAAQIYREMRKYSIDE----GTSLRAAQFSKPAYPSQKPAFLSDEKY 263 (593)
T ss_pred hhHHHHHHHHhhc---ccCccceEEEEecchHHHHHHHHHHHHhcCCCC----CCchhhhhcccccchhhccchhHHHHH
Confidence 9999998876431 122457799999999999999999999997220 11334433333222111 112223347
Q ss_pred cEEEeChHHHHHHHHccc--CCCCCcceeeecCCcccccC-CCHHHHHHHHHhhhh-cceEEEEeeccchHHHHHHHHhc
Q 007829 277 HIVVATPGRLKDMLAKKK--MNLDNCRYLTLDEADRLVDL-GFEDDIREVFDHFKA-QRQTLLFSATMPTKIQNFARSAL 352 (588)
Q Consensus 277 ~IvV~Tp~~l~~~l~~~~--~~l~~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~~~~~~~l 352 (588)
+|+|.||-++...+.... +.++.+.++|+||||++.+. +|..++..|++.+.. ...+-+||||++..+++++...+
T Consensus 264 dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~ 343 (593)
T KOG0344|consen 264 DILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIK 343 (593)
T ss_pred HHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhh
Confidence 999999999998888765 67899999999999999998 899999999988753 45677899999999999999999
Q ss_pred cCCeEEEecCCCCcccceEEEeeehhh-HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHH-HHcCCcEEEEeCCCC
Q 007829 353 VKPVTVNVGRAGAANLDVIQEVEYVKQ-EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYL-LLKGVEAVAVHGGKD 429 (588)
Q Consensus 353 ~~p~~i~~~~~~~~~~~v~~~~~~~~~-~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L-~~~g~~~~~ihg~~~ 429 (588)
.+++.+.++..+.++..+.|...++.. ..++..+.+.+.. ..+|+|||+.++..|..|...| ...++++.++||..+
T Consensus 344 ~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 344 SDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERS 423 (593)
T ss_pred ccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccc
Confidence 999999999998888889998888764 5677777777766 5789999999999999999999 788999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHH
Q 007829 430 QEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 509 (588)
Q Consensus 430 ~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~ 509 (588)
+.+|..++++|+.|+++|||||++++||+|+.++++|||||+|.+...|+||+||+||+|+.|.|++|++.. +-..+..
T Consensus 424 ~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~-d~~~ir~ 502 (593)
T KOG0344|consen 424 QKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQ-DMPRIRS 502 (593)
T ss_pred hhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccc-cchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 6778899
Q ss_pred HHHHHHHhcCcCchHHhhccC
Q 007829 510 LKHLLQEAKQRIPPVLAELND 530 (588)
Q Consensus 510 l~~~l~~~~~~vp~~l~~l~~ 530 (588)
+...++..+..+|.++..+..
T Consensus 503 iae~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 503 IAEVMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred HHHHHHHcCCcchHHHHhhhh
Confidence 999999999999999887765
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-55 Score=425.72 Aligned_cols=372 Identities=32% Similarity=0.505 Sum_probs=322.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007829 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
-...+|+++.|.|++++++..++|.+|+.+|..++|.+|.. +|+|..+..|+|||.+|.|.+|..+--. .
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~ 158 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------V 158 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------c
Confidence 35679999999999999999999999999999999999965 7999999999999999999999875332 2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMN 296 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-~~~~ 296 (588)
..|.++.|+|||+||.|+.+.+.+.++.. ++...+.+.|.....- ..+ ..+|+|+||+.+.|++.+ +.+.
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~------~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id 229 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFT------ELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCID 229 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCce------eeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhC
Confidence 57889999999999999999999997654 6777777766411110 111 148999999999999998 8888
Q ss_pred CCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEee
Q 007829 297 LDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~ 375 (588)
+..++.+|+||||.|++ .||.++-..|...++...|+++||||+...+..|+...+.++..+.+.+......++.|...
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv 309 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYV 309 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhee
Confidence 99999999999999997 57999999999999999999999999999999999999999999999888888888888777
Q ss_pred ehh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007829 376 YVK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 376 ~~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~ 453 (588)
.+. ..+|+..+.+.... .-++.||||.++..+..++..|...|..+.++||.|.-.+|..++++|+.|..+|||+|++
T Consensus 310 ~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV 389 (477)
T KOG0332|consen 310 LCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNV 389 (477)
T ss_pred eccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEech
Confidence 665 45667777664433 3468999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceEEecCCCC------ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHH-HhcCcCchHHh
Q 007829 454 ASKGLDFPDIQHVINYDMPA------EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ-EAKQRIPPVLA 526 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~------s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~-~~~~~vp~~l~ 526 (588)
++||||++.|++|||||+|. +++.|+||||||||.|+.|.++.|+....+.+.+..+.+... ...+..|+.+.
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~ 469 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLD 469 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHH
Confidence 99999999999999999994 799999999999999999999999999878777777776663 33344554444
Q ss_pred hc
Q 007829 527 EL 528 (588)
Q Consensus 527 ~l 528 (588)
++
T Consensus 470 E~ 471 (477)
T KOG0332|consen 470 EL 471 (477)
T ss_pred HH
Confidence 43
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-56 Score=434.81 Aligned_cols=360 Identities=36% Similarity=0.583 Sum_probs=336.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
-.+|..|+|...+.+++.+.||..|||+|+..||.+|.++|++..+.||||||.+|++|+++.+.... ..|-+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~R 92 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLR 92 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccc
Confidence 45899999999999999999999999999999999999999999999999999999999999886542 35789
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
+++++|||+|+.|+.+.++.+.... ++++++++||..+.+++..+..++|||+|||+++..+...-.+.|+.+.
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt------~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT------KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc------chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheecccccee
Confidence 9999999999999999999998765 8999999999999999999998999999999999888777678899999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHH
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~ 381 (588)
||||||||++..|||.+++..++..++..+|+++||||+|..+.++++..+..|+.+.+......+......+.++....
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999887777667777777888888999
Q ss_pred HHHHHHHHhhcCCC--CEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007829 382 KIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 382 k~~~ll~~l~~~~~--~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlD 459 (588)
|..+|+..+.+... +++|||.++.+++.+...|...|+.+..++|.+++..|...+..|+.++..+||.|++++||+|
T Consensus 247 K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 247 KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 99999999988654 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHH
Q 007829 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 460 ip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
+|-.+.|||||+|.+..-|+||+||+.|+|.+|.+|.|+... +..++.+|..++.
T Consensus 327 iplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~-~~~yl~DL~lflg 381 (529)
T KOG0337|consen 327 IPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVAST-DDPYLLDLQLFLG 381 (529)
T ss_pred CccccccccccCCCCCceEEEEecchhhccccceEEEEEecc-cchhhhhhhhhcC
Confidence 999999999999999999999999999999999999999988 5667777776653
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.9e-53 Score=470.42 Aligned_cols=343 Identities=18% Similarity=0.240 Sum_probs=273.8
Q ss_pred CCCCCCCCCCC--CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007829 138 IPPPIKNFKDM--RFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 138 ~p~p~~~f~~~--~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
+|+--..+..+ .+++.+.++|.+.||..||++|.++|+.+++|+|+++++|||||||++|++|++..+...
T Consensus 7 ~p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------- 79 (742)
T TIGR03817 7 LPARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------- 79 (742)
T ss_pred cCCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------
Confidence 44444444444 489999999999999999999999999999999999999999999999999999987652
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc--
Q 007829 216 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-- 293 (588)
Q Consensus 216 ~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-- 293 (588)
.++++|||+||++||.|+.+.+..+. ..++++..+.|+++.. +...+..+++|+|+||++|...+...
T Consensus 80 --~~~~aL~l~PtraLa~q~~~~l~~l~-------~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~ 149 (742)
T TIGR03817 80 --PRATALYLAPTKALAADQLRAVRELT-------LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHA 149 (742)
T ss_pred --CCcEEEEEcChHHHHHHHHHHHHHhc-------cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchh
Confidence 46799999999999999999999985 1268888888887754 44566777999999999997543321
Q ss_pred --cCCCCCcceeeecCCcccccCCCHHHHHHHHHhh-------hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCC
Q 007829 294 --KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364 (588)
Q Consensus 294 --~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~-------~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~ 364 (588)
...++++++|||||||.|.+. |+..+..++..+ +..+|++++|||+++... ++..++..|+.+ +...+
T Consensus 150 ~~~~~l~~l~~vViDEah~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~ 226 (742)
T TIGR03817 150 RWARFLRRLRYVVIDECHSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG 226 (742)
T ss_pred HHHHHHhcCCEEEEeChhhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC
Confidence 223789999999999999874 777766665554 456899999999998864 677777777654 32222
Q ss_pred CcccceEEEeeeh----------------hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--------CCc
Q 007829 365 AANLDVIQEVEYV----------------KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--------GVE 420 (588)
Q Consensus 365 ~~~~~v~~~~~~~----------------~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--------g~~ 420 (588)
.........+... ....+. .++..+...+.++||||+|+..++.++..|... +..
T Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~-~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~ 305 (742)
T TIGR03817 227 SPRGARTVALWEPPLTELTGENGAPVRRSASAEAA-DLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAER 305 (742)
T ss_pred CCcCceEEEEecCCccccccccccccccchHHHHH-HHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 2211111111000 011222 233333334679999999999999999998764 567
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcC
Q 007829 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 421 ~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
+..+||++++++|..+++.|++|++++||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.+++++..
T Consensus 306 v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 306 VAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred hhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 007829 501 N 501 (588)
Q Consensus 501 ~ 501 (588)
+
T Consensus 386 ~ 386 (742)
T TIGR03817 386 D 386 (742)
T ss_pred C
Confidence 4
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.7e-54 Score=439.82 Aligned_cols=354 Identities=29% Similarity=0.464 Sum_probs=320.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007829 136 EDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 136 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
...|.....|+++-+...++..|+..+|..||++|..|||.++++-|+|+.|..|+|||++|.+.++..+...
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~------- 90 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR------- 90 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-------
Confidence 3456777899999999999999999999999999999999999999999999999999999999888765332
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC
Q 007829 216 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 216 ~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~ 295 (588)
...+..+||+|||++|.|+.+.+.+++..+ .++++.+++||++.......++. ++|+|+||||+..++..+.+
T Consensus 91 -~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf-----~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~ 163 (980)
T KOG4284|consen 91 -SSHIQKVIVTPTREIAVQIKETVRKVAPSF-----TGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAM 163 (980)
T ss_pred -cCcceeEEEecchhhhhHHHHHHHHhcccc-----cCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCC
Confidence 357889999999999999999999998764 48999999999998887777765 79999999999999999999
Q ss_pred CCCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEe
Q 007829 296 NLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV 374 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~ 374 (588)
+.+.++++|+||||.+.+ ..|.+++..|++.++..+|++.||||.|..+.+.+.++|.+|..+...........+.|.+
T Consensus 164 n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv 243 (980)
T KOG4284|consen 164 NMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYV 243 (980)
T ss_pred CccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhhee
Confidence 999999999999999998 5699999999999999999999999999999999999999999998888877778888877
Q ss_pred eehhh--------HHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007829 375 EYVKQ--------EAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 375 ~~~~~--------~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~ 445 (588)
..... ..++..|-+.+... -.+.||||+....|+.++++|...|+.+.++.|.|+|.+|..+++.++.-..
T Consensus 244 ~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 244 VAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 65542 23444444444442 3479999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCC
Q 007829 446 DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 446 ~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~ 503 (588)
+|||+||..+||||-++|++|||.|.|.+.+.|.||||||||.|..|.+++|+....+
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999988744
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.6e-51 Score=454.96 Aligned_cols=331 Identities=20% Similarity=0.302 Sum_probs=262.8
Q ss_pred CCC--CCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 144 NFK--DMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 144 ~f~--~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+|. .+++...+...++.. |+..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~G 501 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PG 501 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CC
Confidence 355 355667777777776 9999999999999999999999999999999999999999852 45
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh------cCCcEEEeChHHHHH--HHHc
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK------RGVHIVVATPGRLKD--MLAK 292 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~------~~~~IvV~Tp~~l~~--~l~~ 292 (588)
.+|||+|+++|+.++...+... ++++..+.++....++...+. ..++|+|+||++|.. .+..
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~----------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~ 571 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA----------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLR 571 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC----------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHH
Confidence 7999999999998766666554 788999999988777655443 358999999999852 2222
Q ss_pred c--cC-CCCCcceeeecCCcccccCC--CHHHHHHH--HHhhhhcceEEEEeeccchHHHHHHHHhccCC-eEEEecCCC
Q 007829 293 K--KM-NLDNCRYLTLDEADRLVDLG--FEDDIREV--FDHFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAG 364 (588)
Q Consensus 293 ~--~~-~l~~~~~lIvDEah~l~~~~--~~~~i~~i--~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p-~~i~~~~~~ 364 (588)
. .+ ....+.+|||||||++++|| |++.++.+ +...-+..++++||||++..+...+...+... ..+....
T Consensus 572 ~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-- 649 (1195)
T PLN03137 572 HLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-- 649 (1195)
T ss_pred HHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--
Confidence 1 11 23458899999999999998 76766653 33333567899999999999887666655422 2222222
Q ss_pred CcccceEEEeeehhhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007829 365 AANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442 (588)
Q Consensus 365 ~~~~~v~~~~~~~~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~ 442 (588)
....++...+... ....+..+...+.. ...+.||||.++..|+.++..|...|+.+..|||+|++.+|..+++.|..
T Consensus 650 f~RpNL~y~Vv~k-~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~ 728 (1195)
T PLN03137 650 FNRPNLWYSVVPK-TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK 728 (1195)
T ss_pred cCccceEEEEecc-chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc
Confidence 2233343333322 12223445555543 24579999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 443 g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|+++|||||+++++|||+|+|++||||++|.+++.|+||+|||||+|..|.|++|+...
T Consensus 729 Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 729 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred CCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999765
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.6e-50 Score=431.57 Aligned_cols=312 Identities=21% Similarity=0.331 Sum_probs=248.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
||..|+|+|.++|+.+++|+|+++++|||||||++|++|++. .++.+|||+||++|+.|+++.+..
T Consensus 8 g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--------------~~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 8 GLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--------------SDGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--------------cCCcEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999884 245789999999999999988876
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHH---HHh-cCCcEEEeChHHHHHHH-HcccC-CCCCcceeeecCCcccccCC
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VVK-RGVHIVVATPGRLKDML-AKKKM-NLDNCRYLTLDEADRLVDLG 315 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~-~~~~IvV~Tp~~l~~~l-~~~~~-~l~~~~~lIvDEah~l~~~~ 315 (588)
+ ++.+..+.++....++.. .+. ..++|+++||+++.... ....+ ....+++|||||||++.+||
T Consensus 74 ~----------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g 143 (470)
T TIGR00614 74 S----------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWG 143 (470)
T ss_pred c----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccc
Confidence 5 677778877766554322 222 34799999999975322 11122 56789999999999999988
Q ss_pred --CHHHHHHHH--HhhhhcceEEEEeeccchHHHHHHHHhc--cCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHH
Q 007829 316 --FEDDIREVF--DHFKAQRQTLLFSATMPTKIQNFARSAL--VKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 389 (588)
Q Consensus 316 --~~~~i~~i~--~~~~~~~q~l~~SAT~~~~i~~~~~~~l--~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~ 389 (588)
|...+..+. ....+..+++++|||+++.+...+...+ .+|..+... . ...++...+.... ...+..++..
T Consensus 144 ~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~--~r~nl~~~v~~~~-~~~~~~l~~~ 219 (470)
T TIGR00614 144 HDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-F--DRPNLYYEVRRKT-PKILEDLLRF 219 (470)
T ss_pred cccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-C--CCCCcEEEEEeCC-ccHHHHHHHH
Confidence 555554432 2222467899999999998876665554 344433322 1 1222322222221 1234455666
Q ss_pred hhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE
Q 007829 390 LQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467 (588)
Q Consensus 390 l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI 467 (588)
+.+ .+..+||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||
T Consensus 220 l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI 299 (470)
T TIGR00614 220 IRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI 299 (470)
T ss_pred HHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE
Confidence 642 345679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 468 ~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+|++|.|++.|+||+|||||.|..|.+++|++..
T Consensus 300 ~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~ 333 (470)
T TIGR00614 300 HYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA 333 (470)
T ss_pred EeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh
Confidence 9999999999999999999999999999999877
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-51 Score=407.19 Aligned_cols=348 Identities=28% Similarity=0.421 Sum_probs=273.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHh---------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 152 EPILKKLKAKGIVQPTPIQVQGLPVVL---------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~i~~il---------~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
..+...+.++++....|+|...+|.++ .++|+.+.||||||||++|.+|+++.+.+.. -+.-++
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRa 218 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRA 218 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEE
Confidence 344555999999999999999999996 2689999999999999999999999876531 234689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc-----CCcEEEeChHHHHHHHHc-ccCC
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR-----GVHIVVATPGRLKDMLAK-KKMN 296 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-----~~~IvV~Tp~~l~~~l~~-~~~~ 296 (588)
|||+||++|+.|+++.|.+++... ++.|+.+.|..+.......+.. .++|+|+|||||.|++.. +.++
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~t------gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGT------GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCC------ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 999999999999999999998765 8889999998888877777754 248999999999999994 7899
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhh----------------------------------cceEEEEeeccch
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----------------------------------QRQTLLFSATMPT 342 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~----------------------------------~~q~l~~SAT~~~ 342 (588)
|++++|+||||||||++..|..-+-.++.+++. ..+.+.||||+..
T Consensus 293 Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsq 372 (620)
T KOG0350|consen 293 LKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQ 372 (620)
T ss_pred hhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhc
Confidence 999999999999999987665544444433321 1135778888876
Q ss_pred HHHHHHHHhccCCeEEEecCC----CCcccceEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHH--
Q 007829 343 KIQNFARSALVKPVTVNVGRA----GAANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLL-- 415 (588)
Q Consensus 343 ~i~~~~~~~l~~p~~i~~~~~----~~~~~~v~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~-- 415 (588)
.-..+..--+..|-...+... ......+..........-+...+...+.. ...++|+|+++...+.+++..|.
T Consensus 373 dP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~ 452 (620)
T KOG0350|consen 373 DPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVE 452 (620)
T ss_pred ChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHH
Confidence 655666666777744333221 11111111122222222344444454443 45689999999999999999886
Q ss_pred --HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccE
Q 007829 416 --LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 493 (588)
Q Consensus 416 --~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~ 493 (588)
...+++..+.|+++...|...++.|..|.++||||||+++||+|+.+++.|||||+|.+...|+||+|||+|+|+.|.
T Consensus 453 ~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~ 532 (620)
T KOG0350|consen 453 FCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY 532 (620)
T ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce
Confidence 335677779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCChhHHHHHHH
Q 007829 494 ATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 494 ~~~~~~~~~~~~~~~~l~~ 512 (588)
|++++...+...+...|+.
T Consensus 533 a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 533 AITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred EEEeeccccchHHHHHHHH
Confidence 9999998844433333333
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.9e-48 Score=428.19 Aligned_cols=322 Identities=23% Similarity=0.352 Sum_probs=253.9
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 150 FPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
++....+.|++. ||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..+|||+|+
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl 74 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPL 74 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecH
Confidence 344445556554 9999999999999999999999999999999999999999842 3468999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcccCCCCCcceee
Q 007829 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lI 304 (588)
++|+.|+.+.+..+ ++.+.++.++......... +. ...+++++||++|........+...++++||
T Consensus 75 ~sL~~dqv~~l~~~----------gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iV 144 (607)
T PRK11057 75 ISLMKDQVDQLLAN----------GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLA 144 (607)
T ss_pred HHHHHHHHHHHHHc----------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEE
Confidence 99999999988775 6777777777665544332 22 3478999999998643222334456789999
Q ss_pred ecCCcccccCC--CHHHHHHH---HHhhhhcceEEEEeeccchHHHHHHHHhc--cCCeEEEecCCCCcccceEEEeeeh
Q 007829 305 LDEADRLVDLG--FEDDIREV---FDHFKAQRQTLLFSATMPTKIQNFARSAL--VKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 305 vDEah~l~~~~--~~~~i~~i---~~~~~~~~q~l~~SAT~~~~i~~~~~~~l--~~p~~i~~~~~~~~~~~v~~~~~~~ 377 (588)
|||||++.+|| |.+.++.+ ...+ +..+++++|||+++.+...+...+ .+|.... .... ..++...+ .
T Consensus 145 IDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~--r~nl~~~v--~ 218 (607)
T PRK11057 145 VDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD--RPNIRYTL--V 218 (607)
T ss_pred EeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCC--CCcceeee--e
Confidence 99999999987 55555443 2233 467899999999998766544443 3444332 2221 12222221 1
Q ss_pred hhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007829 378 KQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 456 (588)
.....+..++..+.. .+.++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~ 298 (607)
T PRK11057 219 EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGM 298 (607)
T ss_pred eccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhc
Confidence 222334455555543 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|||+|+|++||||++|.|++.|+||+|||||.|..|.+++|++..
T Consensus 299 GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~ 343 (607)
T PRK11057 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred cCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHH
Confidence 999999999999999999999999999999999999999999876
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.3e-48 Score=426.72 Aligned_cols=316 Identities=23% Similarity=0.364 Sum_probs=255.5
Q ss_pred HHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 156 KKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 156 ~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
+.|++. ||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKD 68 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHH
Confidence 345554 9999999999999999999999999999999999999999842 3468999999999999
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcc
Q 007829 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV----KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~ 310 (588)
+++.+..+ ++.+..+.++.+..+....+ ....+|+++||++|........+...++++|||||||+
T Consensus 69 q~~~l~~~----------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~ 138 (591)
T TIGR01389 69 QVDQLRAA----------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHC 138 (591)
T ss_pred HHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcc
Confidence 99988876 67788888887766543322 24689999999999654444455667899999999999
Q ss_pred cccCC--CHHHHHHHHH---hhhhcceEEEEeeccchHHHHHHHHhcc--CCeEEEecCCCCcccceEEEeeehhhHHHH
Q 007829 311 LVDLG--FEDDIREVFD---HFKAQRQTLLFSATMPTKIQNFARSALV--KPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383 (588)
Q Consensus 311 l~~~~--~~~~i~~i~~---~~~~~~q~l~~SAT~~~~i~~~~~~~l~--~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~ 383 (588)
+.+|| |.+.+..+.. .++ ..+++++|||+++.+...+...+. .+..+. .. ....++...+. ....+.
T Consensus 139 i~~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~nl~~~v~--~~~~~~ 212 (591)
T TIGR01389 139 VSQWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TS--FDRPNLRFSVV--KKNNKQ 212 (591)
T ss_pred cccccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CCCCCcEEEEE--eCCCHH
Confidence 99987 6665554433 333 345999999999998877666654 333222 11 12223322222 223344
Q ss_pred HHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC
Q 007829 384 VYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 384 ~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~ 462 (588)
..+.+.+... +.++||||+++..++.+++.|...|+.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|+
T Consensus 213 ~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~ 292 (591)
T TIGR01389 213 KFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPN 292 (591)
T ss_pred HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCC
Confidence 4556666543 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 463 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 463 v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+++||+|++|.|++.|+|++|||||.|..|.+++|++..
T Consensus 293 v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 293 VRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred CCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHH
Confidence 999999999999999999999999999999999998776
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-46 Score=429.65 Aligned_cols=347 Identities=21% Similarity=0.277 Sum_probs=259.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
+++.+.+.+.+ +|..|||+|.++|+.+++|+|++++||||||||++|++|++..+...... .....++++|||+||+
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--GELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--cCCCCCeEEEEEcCHH
Confidence 66777777665 68999999999999999999999999999999999999999988753211 0112467899999999
Q ss_pred HHHHHHHHHHHHHhhccc------ccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC--CCCCcc
Q 007829 230 ELARQTYEVVEQFLTPMR------DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM--NLDNCR 301 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~------~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~--~l~~~~ 301 (588)
+|+.|+++.+...+..+. ....+++++.+.+|+++..++...+.+.++|+||||++|..++....+ .+.+++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 999999987775443221 122347899999999988888777888899999999999877765433 478999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhh----hhcceEEEEeeccchH--HHHHHHHhc----cCCeEEEecCCCCcccceE
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTK--IQNFARSAL----VKPVTVNVGRAGAANLDVI 371 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~----~~~~q~l~~SAT~~~~--i~~~~~~~l----~~p~~i~~~~~~~~~~~v~ 371 (588)
+|||||+|.+.+..++..+...+..+ +...|++++|||+++. +..++.... ..++.+.... ......+.
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~ 253 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIK 253 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccC-CCccceEE
Confidence 99999999999877766665555443 3567999999999763 222222211 1122221111 11111110
Q ss_pred EE-----eeehhh----HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHH
Q 007829 372 QE-----VEYVKQ----EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK------GVEAVAVHGGKDQEEREYA 436 (588)
Q Consensus 372 ~~-----~~~~~~----~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~r~~~ 436 (588)
.. ...... ......+.+.+ +..+++||||+|+..|+.++..|... +..+..+||++++++|..+
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i-~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELI-KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 00 000111 11122233333 34678999999999999999999763 4679999999999999999
Q ss_pred HHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCC-CCccEEEEEEcCC
Q 007829 437 ISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC-GKTGIATTFINKN 501 (588)
Q Consensus 437 ~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~-g~~g~~~~~~~~~ 501 (588)
++.|++|+++|||||+++++|||+|++++||+|+.|.++..|+||+||+||. |..+.++++....
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999987 5555666665543
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.1e-47 Score=427.31 Aligned_cols=336 Identities=24% Similarity=0.393 Sum_probs=260.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.|+++++|+.+++.+.+.||..|+|+|.++++. +++|+|++++||||||||++|.+|++..+. ++.++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----------~~~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----------RGGKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----------cCCcE
Confidence 578999999999999999999999999999998 679999999999999999999999998773 35689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
|||+|+++||.|+++.+.++.. + ++++..++|+...... ....++|+||||+++..++.+....++++++
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~------g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~l 140 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-L------GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITC 140 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-C------CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCE
Confidence 9999999999999999997642 2 6889999998765432 2245799999999998888766666889999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhh---hhcceEEEEeeccchH--HHHHHHHhcc----CCeEEEec--CCCCcccceE
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTK--IQNFARSALV----KPVTVNVG--RAGAANLDVI 371 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~--i~~~~~~~l~----~p~~i~~~--~~~~~~~~v~ 371 (588)
||+||+|.+.+.+++..+..++..+ ....|++++|||+++. +.+++...+. .|+.+..+ ..........
T Consensus 141 vViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~ 220 (737)
T PRK02362 141 VVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDS 220 (737)
T ss_pred EEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccc
Confidence 9999999999988888888877665 4678999999999763 2222221110 12211111 0000000000
Q ss_pred EE-eeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC--------------------------------
Q 007829 372 QE-VEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG-------------------------------- 418 (588)
Q Consensus 372 ~~-~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-------------------------------- 418 (588)
+. +...........+.+.+ ..++++||||+++..|+.++..|....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 299 (737)
T PRK02362 221 QREVEVPSKDDTLNLVLDTL-EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLA 299 (737)
T ss_pred cccCCCccchHHHHHHHHHH-HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHH
Confidence 00 00001112222333333 356799999999999999988885431
Q ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC-----CCCChhHHHHHhccc
Q 007829 419 ----VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD-----MPAEIENYVHRIGRT 485 (588)
Q Consensus 419 ----~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~----~~-----~p~s~~~y~QriGRa 485 (588)
..++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||
T Consensus 300 ~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 300 DCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRA 379 (737)
T ss_pred HHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcC
Confidence 35788999999999999999999999999999999999999999999997 66 588999999999999
Q ss_pred CCCCCc--cEEEEEEcCC
Q 007829 486 GRCGKT--GIATTFINKN 501 (588)
Q Consensus 486 gR~g~~--g~~~~~~~~~ 501 (588)
||.|.. |.+++++...
T Consensus 380 GR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCCCCceEEEEecCc
Confidence 999865 8899988654
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.3e-46 Score=417.24 Aligned_cols=336 Identities=22% Similarity=0.297 Sum_probs=263.0
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
+|+++++++.+.+.|++.||.+|+|+|.++++. +++|+|+++++|||||||++|.+|++..+.. .+.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----------~~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----------EGGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----------cCCeE
Confidence 578899999999999999999999999999986 7899999999999999999999999988754 36789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
|||+|+++|+.|+++.+..+. .+ ++++..++|+.+.... ....++|+|+||+++..++.++...++++++
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~-~~------g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~l 141 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWE-KL------GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKL 141 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHh-hc------CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCE
Confidence 999999999999999998763 22 7889999998765432 2245899999999998888776667899999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccce-EEEeeehhh--
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDV-IQEVEYVKQ-- 379 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v-~~~~~~~~~-- 379 (588)
||+||+|.+.+.+++..+..++..+....|++++|||+++. .+++. ++.........+.......+ .+.+.+...
T Consensus 142 vViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~ 219 (720)
T PRK00254 142 VVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGK 219 (720)
T ss_pred EEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcc
Confidence 99999999999889999999999998899999999999863 44443 44332211111110000000 011111110
Q ss_pred ----HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc---------------------------------CCcEE
Q 007829 380 ----EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK---------------------------------GVEAV 422 (588)
Q Consensus 380 ----~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~---------------------------------g~~~~ 422 (588)
......++..+.+.+.++||||+|+..|+.++..|... ...+.
T Consensus 220 ~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 299 (720)
T PRK00254 220 IERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVA 299 (720)
T ss_pred hhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEE
Confidence 01111222222235679999999999999887666321 23588
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe-------cCCCC-ChhHHHHHhcccCCCC--Ccc
Q 007829 423 AVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN-------YDMPA-EIENYVHRIGRTGRCG--KTG 492 (588)
Q Consensus 423 ~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~-------~~~p~-s~~~y~QriGRagR~g--~~g 492 (588)
.+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||. +++|. ++.+|.||+|||||.| ..|
T Consensus 300 ~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G 379 (720)
T PRK00254 300 FHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVG 379 (720)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCc
Confidence 9999999999999999999999999999999999999999999994 56654 5779999999999975 679
Q ss_pred EEEEEEcCC
Q 007829 493 IATTFINKN 501 (588)
Q Consensus 493 ~~~~~~~~~ 501 (588)
.+++++..+
T Consensus 380 ~~ii~~~~~ 388 (720)
T PRK00254 380 EAIIVATTE 388 (720)
T ss_pred eEEEEecCc
Confidence 999998765
No 44
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.1e-46 Score=391.62 Aligned_cols=322 Identities=25% Similarity=0.404 Sum_probs=261.9
Q ss_pred HHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007829 155 LKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 155 ~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
...|+.. |+..++|-|.++|..+++|+|+++++|||+|||+||++|++.. .| .+|||.|..+|..
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G-~TLVVSPLiSLM~ 71 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EG-LTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CC-CEEEECchHHHHH
Confidence 3456655 8999999999999999999999999999999999999999853 23 6899999999999
Q ss_pred HHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcccCCCCCcceeeecCCc
Q 007829 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 234 Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah 309 (588)
.+.+.+... ++.+.++.+..+..+....+ .. ..++++-+|++|..--..+.+.-..+.+++|||||
T Consensus 72 DQV~~l~~~----------Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 72 DQVDQLEAA----------GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred HHHHHHHHc----------CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 999999887 78888888887766654433 33 37999999999965544444446678899999999
Q ss_pred ccccCC--CHHHHHHHHHhhh--hcceEEEEeeccchHHHHHHHHhccC-CeEEEecCCCCcccceEEEeeeh-hhHHHH
Q 007829 310 RLVDLG--FEDDIREVFDHFK--AQRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRAGAANLDVIQEVEYV-KQEAKI 383 (588)
Q Consensus 310 ~l~~~~--~~~~i~~i~~~~~--~~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~~~~~~v~~~~~~~-~~~~k~ 383 (588)
++.+|| |++..+.+-.... +...++.+|||.++.++..+...+.- ...+..... ...++...+... ....++
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--dRpNi~~~v~~~~~~~~q~ 219 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--DRPNLALKVVEKGEPSDQL 219 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--CCchhhhhhhhcccHHHHH
Confidence 999998 8887776654432 25679999999999998877766643 222333322 223333332222 233444
Q ss_pred HHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc
Q 007829 384 VYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDI 463 (588)
Q Consensus 384 ~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v 463 (588)
..+.+.+.....+.||||.|++.++.++++|...|+.+..|||||+.++|..+.++|..++.+|+|||.++++|||.|+|
T Consensus 220 ~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdV 299 (590)
T COG0514 220 AFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDV 299 (590)
T ss_pred HHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCc
Confidence 43333334456679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 464 QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 464 ~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
++||||++|.|++.|+|.+|||||+|....|++|+.+.+
T Consensus 300 RfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 300 RFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred eEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 999999999999999999999999999999999999884
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.7e-45 Score=402.20 Aligned_cols=324 Identities=18% Similarity=0.222 Sum_probs=254.8
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHhcCC-CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE-EcCCHHH
Q 007829 155 LKKLKA-KGIVQPTPIQVQGLPVVLSGR-DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI-VCPSREL 231 (588)
Q Consensus 155 ~~~l~~-~g~~~p~~~Q~~~i~~il~g~-dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li-l~Ptr~L 231 (588)
.+.+.+ .||. |||||.++|+.++.|+ ++++.+|||||||.+|.++++... . ....++.|| ++|||+|
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~--------~~~~~~rLv~~vPtReL 74 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I--------GAKVPRRLVYVVNRRTV 74 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c--------cccccceEEEeCchHHH
Confidence 344555 3888 9999999999999998 577789999999997765554221 1 123455555 7799999
Q ss_pred HHHHHHHHHHHhhccc-----------------ccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc
Q 007829 232 ARQTYEVVEQFLTPMR-----------------DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
|.|+++.+.++...+. ..+...+++..++||.+...++..+..+++|||+|+ |++.++.
T Consensus 75 a~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~ 150 (844)
T TIGR02621 75 VDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRL 150 (844)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCc
Confidence 9999999999988652 223456899999999999999999999999999996 6666555
Q ss_pred CC----------------CCCcceeeecCCcccccCCCHHHHHHHHHhh--hh---cceEEEEeeccchHHHHHHHHhcc
Q 007829 295 MN----------------LDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KA---QRQTLLFSATMPTKIQNFARSALV 353 (588)
Q Consensus 295 ~~----------------l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~--~~---~~q~l~~SAT~~~~i~~~~~~~l~ 353 (588)
++ ++++++||+|||| ++++|...+..|++.+ +. .+|+++||||+|..+..+...++.
T Consensus 151 L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~ 228 (844)
T TIGR02621 151 LFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA 228 (844)
T ss_pred cccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc
Confidence 42 6889999999999 6899999999999975 33 269999999999988888888887
Q ss_pred CCeEEEecCCCCcccceEEEeeehhhHHHHHHHH----HHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 354 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL----ECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 354 ~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll----~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
++..+.+.........+.+.+ ....+.++..++ ..+...+.++||||||+..++.+++.|...++ ..+||+|+
T Consensus 229 ~p~~i~V~~~~l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~ 305 (844)
T TIGR02621 229 EDYKHPVLKKRLAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLR 305 (844)
T ss_pred CCceeecccccccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCC
Confidence 777666554433333444432 233333333333 23344567899999999999999999998887 89999999
Q ss_pred HHHHH-----HHHHHHhc----CC-------cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCc-c
Q 007829 430 QEERE-----YAISSFKA----GK-------KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT-G 492 (588)
Q Consensus 430 ~~~r~-----~~~~~F~~----g~-------~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~-g 492 (588)
+.+|. .+++.|++ |+ ..|||||+++++||||+. ++||++..| ++.|+||+||+||.|+. +
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQA 382 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCC
Confidence 99999 88999987 54 689999999999999986 899998877 68999999999999986 4
Q ss_pred EEEEEEcC
Q 007829 493 IATTFINK 500 (588)
Q Consensus 493 ~~~~~~~~ 500 (588)
.++++++.
T Consensus 383 ~~i~vv~~ 390 (844)
T TIGR02621 383 CQIAVVHL 390 (844)
T ss_pred ceEEEEee
Confidence 44666644
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-47 Score=352.14 Aligned_cols=335 Identities=29% Similarity=0.503 Sum_probs=280.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..-|.++-|.|++++++...||.+|+.+|.++||...-|-|++..|..|.|||.+|++..++.+-- . .....
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v--~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------V--DGQVS 112 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------C--CCeEE
Confidence 346889999999999999999999999999999999999999999999999999999999876522 1 12346
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
+|++|.||+||-|+..++.+|.+.+ |+.++.+.+||.+++.....+++-+||+|+||||++.+...+.+++++++
T Consensus 113 vlvmchtrelafqi~~ey~rfskym-----P~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYM-----PSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhC-----CCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 8999999999999999999998775 79999999999999999899999999999999999999999999999999
Q ss_pred eeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcc-cceEEEeeehhh
Q 007829 302 YLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN-LDVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~-~~v~~~~~~~~~ 379 (588)
.+|+||||.|+.+ ..+.++..|++..+...|+++||||++++++...++++.+|..+.+....... ....|.+.....
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke 267 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE 267 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh
Confidence 9999999999863 34578899999999999999999999999999999999999988876654333 334444444444
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007829 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 458 (588)
..|-..+...|.. .-.+++||+.+... | + | ..+ +|||++++||+
T Consensus 268 ~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgm 312 (387)
T KOG0329|consen 268 NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGM 312 (387)
T ss_pred hhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhcccc
Confidence 4444444444432 24589999988654 0 0 2 234 89999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchH
Q 007829 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~ 524 (588)
|+..++.|+|||+|.+...|+||+|||||.|..|.+++|+....+...+.++..-..-....+|+.
T Consensus 313 diervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 313 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999999999999999999998877767666665554444445543
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.6e-44 Score=402.44 Aligned_cols=321 Identities=18% Similarity=0.214 Sum_probs=257.0
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 150 FPEPILKKLKAK-GIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 150 l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g------~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+..+.+.+.+. +| .|||+|.++|+.++++ +|++++||||||||.+|++|++..+. .++++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-----------~g~qv 503 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-----------DGKQV 503 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-----------hCCeE
Confidence 345566666665 77 5999999999999975 79999999999999999999987763 36789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHhc-CCcEEEeChHHHHHHHHcccCCCC
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVKR-GVHIVVATPGRLKDMLAKKKMNLD 298 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l~ 298 (588)
+||+||++||.|+++.+.+++..+ ++++..++|+.+..++. ..+.. .++|||+||. ++ .+.+.+.
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~------~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~ 572 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANF------PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFK 572 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC------CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcc
Confidence 999999999999999999987654 68888888887654443 33444 4899999993 22 4556789
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK 378 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~ 378 (588)
++++|||||+|++ +...+..+..++...|+++||||+++....+....+.++..+.....+ ...+...+....
T Consensus 573 ~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~ 645 (926)
T TIGR00580 573 DLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD 645 (926)
T ss_pred cCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC
Confidence 9999999999994 355667777788889999999999887766666666666655543322 223333332222
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007829 379 QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 456 (588)
.......+...+. .+++++|||+++..++.+++.|... ++++..+||+|++.+|..++++|++|+++|||||+++++
T Consensus 646 ~~~i~~~i~~el~-~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~ 724 (926)
T TIGR00580 646 PELVREAIRRELL-RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIET 724 (926)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 2211222333333 4678999999999999999999874 789999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCC-ChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 457 GLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~-s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|+|+|++++||+++.|. +..+|+||+||+||.|+.|.|++|+.+.
T Consensus 725 GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 725 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999999975 6889999999999999999999999765
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.9e-43 Score=388.55 Aligned_cols=372 Identities=20% Similarity=0.271 Sum_probs=270.1
Q ss_pred HHHHHHHHHC-CCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE
Q 007829 152 EPILKKLKAK-GIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI 224 (588)
Q Consensus 152 ~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g------~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li 224 (588)
..+.+.+... +| .||++|.++++.+.++ .+++++||||||||++|++|++..+. .|.+++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----------~g~q~li 315 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----------AGYQAAL 315 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEE
Confidence 4455555554 66 6999999999999976 48999999999999999999987652 4789999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhc-CCcEEEeChHHHHHHHHcccCCCCCc
Q 007829 225 VCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 225 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l~~~ 300 (588)
|+||++||.|+++.+++++..+ ++++.+++|+.+..+. ...+.. .++|+|+||+.+. ..+.+.++
T Consensus 316 laPT~~LA~Q~~~~l~~l~~~~------~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l 384 (681)
T PRK10917 316 MAPTEILAEQHYENLKKLLEPL------GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNL 384 (681)
T ss_pred EeccHHHHHHHHHHHHHHHhhc------CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhccc
Confidence 9999999999999999998765 7899999999886444 334444 4999999998773 34567899
Q ss_pred ceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhH
Q 007829 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE 380 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~ 380 (588)
++||+||+|++ +...+..+......+++++||||+.+....+......+...+. ........+...+......
T Consensus 385 ~lvVIDE~Hrf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~~~~~~~~~~ 457 (681)
T PRK10917 385 GLVIIDEQHRF-----GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPITTVVIPDSRR 457 (681)
T ss_pred ceEEEechhhh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcEEEEeCcccH
Confidence 99999999995 3444555555555689999999987765444432222222222 1111122333333333333
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCccc--------cHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007829 381 AKIVYLLECLQKTPPPVLIFCENKA--------DVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 381 ~k~~~ll~~l~~~~~~viIF~~s~~--------~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVa 450 (588)
.++...+......+.+++|||+.++ .++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 458 ~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 537 (681)
T PRK10917 458 DEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVA 537 (681)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 3332233222356779999999654 456677777765 578999999999999999999999999999999
Q ss_pred cCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhcc
Q 007829 451 TDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~-s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l~ 529 (588)
|+++++|+|+|++++||+++.|. ....|+||+||+||.|..|.|++++.....+.....+.. +......+ .+++
T Consensus 538 T~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~-~~~~~dgf--~iae-- 612 (681)
T PRK10917 538 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKI-MRETNDGF--VIAE-- 612 (681)
T ss_pred CcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHH-HHHhcchH--HHHH--
Confidence 99999999999999999999997 578899999999999999999999964323323233322 22211100 1111
Q ss_pred CchhhHHHHhhccCCCCCcccCCCCcccccCcc
Q 007829 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPK 562 (588)
Q Consensus 530 ~~~~~~~~~~~~~~~~~c~~cg~~g~~~~~~~~ 562 (588)
. ...+.+.|..-|-.+.|...+++.+..+
T Consensus 613 ---~-dl~~rg~g~~~g~~q~g~~~~~~~~~~~ 641 (681)
T PRK10917 613 ---K-DLELRGPGELLGTRQSGLPEFKVADLVR 641 (681)
T ss_pred ---H-hHhhCCCccccCceecCCCCeeEeeHhh
Confidence 1 1234566667788888888889887654
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.2e-42 Score=400.13 Aligned_cols=316 Identities=20% Similarity=0.211 Sum_probs=251.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 155 LKKLKAKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.+.....+| .||++|.++|+.++.+ +|++++|+||+|||.+|+.+++..+. .+++++||+||
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----------~g~qvlvLvPT 658 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----------NHKQVAVLVPT 658 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----------cCCeEEEEeCc
Confidence 333444466 7999999999999987 89999999999999999988876542 47899999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcccCCCCCcceee
Q 007829 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lI 304 (588)
++||.|+++.+.+++... ++++.+++|+.+..++...+. ..++|+|+||+.+ ...+.+.++++||
T Consensus 659 ~eLA~Q~~~~f~~~~~~~------~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLV 727 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANW------PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLI 727 (1147)
T ss_pred HHHHHHHHHHHHHhhccC------CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEE
Confidence 999999999999876543 678888888888776655443 3589999999643 2456678999999
Q ss_pred ecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHH
Q 007829 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384 (588)
Q Consensus 305 vDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~ 384 (588)
|||+|++ |+ .....++.++..+|+++||||+++....++...+.++..+...... ...+.+.+..........
T Consensus 728 IDEahrf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~ 800 (1147)
T PRK10689 728 VDEEHRF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVRE 800 (1147)
T ss_pred Eechhhc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHH
Confidence 9999996 33 3355667788889999999999988888888888888777654332 223333322222222222
Q ss_pred HHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC
Q 007829 385 YLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 385 ~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~ 462 (588)
.++..+. .+++++|||+++..++.+++.|... ++.+..+||+|++.+|.+++..|++|+++|||||+++++|||+|+
T Consensus 801 ~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~ 879 (1147)
T PRK10689 801 AILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 (1147)
T ss_pred HHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccccc
Confidence 3333333 3568999999999999999999887 789999999999999999999999999999999999999999999
Q ss_pred cceEEecCCC-CChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 463 IQHVINYDMP-AEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 463 v~~VI~~~~p-~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+++||..+.. .+..+|+||+||+||.|+.|.|++++...
T Consensus 880 v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 9999954432 25678999999999999999999988654
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.6e-43 Score=393.66 Aligned_cols=333 Identities=19% Similarity=0.278 Sum_probs=252.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
.|+++++|+.+++.+...+|. |+++|.++++.+++|+|++++||||||||+++.++++..+.. +.++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEE
Confidence 578899999999999999986 999999999999999999999999999999999999877643 56899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~l 303 (588)
|++|+++||.|+++.+.++.. + ++++...+|+...... ..+.++|+|+||+++..++.+....+.++++|
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~-~------g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lv 139 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS-L------GMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLI 139 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh-c------CCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEE
Confidence 999999999999999988642 2 6788888887654332 22457999999999988887766678999999
Q ss_pred eecCCcccccCCCHHHHHHHHHhh---hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEE--Eeee--
Q 007829 304 TLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQ--EVEY-- 376 (588)
Q Consensus 304 IvDEah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~--~~~~-- 376 (588)
|+||+|++.+.+++..+..++..+ +...|++++|||+++. .+++. ++.........+.......+.. .+..
T Consensus 140 ViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 140 VADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLIKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred EEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCccCCCCCCCCeEEEEEecCeeeecc
Confidence 999999999888888887776654 4678999999999764 34443 3322211000000000000000 0000
Q ss_pred -hhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-------------------------CCcEEEEeCCCCH
Q 007829 377 -VKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK-------------------------GVEAVAVHGGKDQ 430 (588)
Q Consensus 377 -~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~-------------------------g~~~~~ihg~~~~ 430 (588)
......+..++......++++||||+++..++.++..|... ...+..+||++++
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 218 YERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 00011122333333345779999999999999999988653 1247789999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC---------CCChhHHHHHhcccCCCCC--ccEEEEEEc
Q 007829 431 EEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM---------PAEIENYVHRIGRTGRCGK--TGIATTFIN 499 (588)
Q Consensus 431 ~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~---------p~s~~~y~QriGRagR~g~--~g~~~~~~~ 499 (588)
++|..+++.|++|.++|||||+++++|+|+|+..+ |+++. |.++.+|.||+|||||.|. .|.+++++.
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~V-II~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLV-IVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEE-EEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 99999999999999999999999999999998654 44443 4588899999999999985 577888876
Q ss_pred CC
Q 007829 500 KN 501 (588)
Q Consensus 500 ~~ 501 (588)
..
T Consensus 377 ~~ 378 (674)
T PRK01172 377 SP 378 (674)
T ss_pred Cc
Confidence 54
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.8e-42 Score=382.24 Aligned_cols=372 Identities=19% Similarity=0.259 Sum_probs=262.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007829 153 PILKKLKAKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 153 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
.+.+.+...+| .||++|.++|+.++++ .+.+++||||||||++|++|++..+. .|++++|++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-----------~g~qvlila 291 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-----------AGYQVALMA 291 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-----------cCCcEEEEC
Confidence 34455566688 7999999999999965 36899999999999999999987652 477899999
Q ss_pred CCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhc-CCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 227 PSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 227 Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
||++||.|+++.+.+++..+ ++++.+++|+....+. ...+.. .++|+|+||+.+.+ .+.+.++++
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~------gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~l 360 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPL------GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLAL 360 (630)
T ss_pred CHHHHHHHHHHHHHHHhccc------CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccce
Confidence 99999999999999998765 7899999999876653 333443 47999999987743 456789999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhh---cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKA---QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~---~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
||+||+|++. ...+..+..... .+++++||||+.+....+......+...+. ........+...+.....
T Consensus 361 vVIDEaH~fg-----~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p~~r~~i~~~~~~~~~ 433 (630)
T TIGR00643 361 VIIDEQHRFG-----VEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELPPGRKPITTVLIKHDE 433 (630)
T ss_pred EEEechhhcc-----HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCCCCCCceEEEEeCcch
Confidence 9999999953 222333332222 678999999987654433221111111111 111111223332222222
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccc--------cHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEE
Q 007829 380 EAKIVYLLECLQKTPPPVLIFCENKA--------DVDDIHEYLLL--KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 449 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~--------~~~~l~~~L~~--~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLV 449 (588)
...+...+......+.+++|||+... .++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 434 ~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 513 (630)
T TIGR00643 434 KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILV 513 (630)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 22222222222235678999999864 45567777765 378899999999999999999999999999999
Q ss_pred EcCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhhc
Q 007829 450 ATDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528 (588)
Q Consensus 450 aT~~~~~GlDip~v~~VI~~~~p~-s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~l 528 (588)
||+++++|+|+|++++||+++.|. +...|+||+||+||.|+.|.|++++.....+.....+ +.+......+ .+.+
T Consensus 514 aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl-~~~~~~~dgf--~iae- 589 (630)
T TIGR00643 514 ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRL-RVMADTLDGF--VIAE- 589 (630)
T ss_pred ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHH-HHHHhhcccH--HHHH-
Confidence 999999999999999999999987 6888999999999999999999999433233222222 2222211111 1111
Q ss_pred cCchhhHHHHhhccCCCCCcccCCCCcccccCcch
Q 007829 529 NDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKL 563 (588)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~c~~cg~~g~~~~~~~~~ 563 (588)
....+...|..-|-.+.|..++++.+..+-
T Consensus 590 -----~dl~~Rg~g~~~g~~QsG~~~~~~~~~~~d 619 (630)
T TIGR00643 590 -----EDLELRGPGDLLGTKQSGYPEFRVADLVRD 619 (630)
T ss_pred -----HHHhcCCCcccCCCcccCCCcceeecHHHH
Confidence 112345566667888888888888776553
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.2e-42 Score=376.04 Aligned_cols=340 Identities=24% Similarity=0.304 Sum_probs=271.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 149 RFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 149 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
-|++.+.+.++.+ |..|||.|.+|||.+++|+|++++||||||||+++.||++..+.... +.....+-.+|||+|.
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPL 82 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPL 82 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcH
Confidence 3789999999998 99999999999999999999999999999999999999999988753 2223456789999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc--CCCCCcceeeec
Q 007829 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK--MNLDNCRYLTLD 306 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~--~~l~~~~~lIvD 306 (588)
|+|.+++.+.+..++..+ ++.+.+.+|+++..+.....++.+||+|+||+.|.-++.... -.|.++++||||
T Consensus 83 kALn~Di~~rL~~~~~~~------G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVD 156 (814)
T COG1201 83 KALNNDIRRRLEEPLREL------GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVD 156 (814)
T ss_pred HHHHHHHHHHHHHHHHHc------CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEee
Confidence 999999999999998876 889999999999998888889999999999999977776543 358999999999
Q ss_pred CCcccccCCCHHHHHHHHHhh---hhcceEEEEeeccchHHHHHHHHhccC--CeEEEecCCCCcccce--EEEeee---
Q 007829 307 EADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVK--PVTVNVGRAGAANLDV--IQEVEY--- 376 (588)
Q Consensus 307 Eah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~--p~~i~~~~~~~~~~~v--~~~~~~--- 376 (588)
|.|.+.+.-.+.++.--+..+ ..+.|.|++|||..+. ...++-+... ++.+.... .....++ ..-...
T Consensus 157 EiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~-~~k~~~i~v~~p~~~~~~ 234 (814)
T COG1201 157 EIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS-AAKKLEIKVISPVEDLIY 234 (814)
T ss_pred hhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcc-cCCcceEEEEecCCcccc
Confidence 999998765555554333332 3378999999999754 2333333333 33332211 1122221 111111
Q ss_pred hh-h-HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007829 377 VK-Q-EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG-VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 377 ~~-~-~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~ 453 (588)
.. . ...+..+.+.++ ....+|||+||+..++.++..|.+.+ ..+..+||.++.+.|..+.++|++|+.+++|||+.
T Consensus 235 ~~~~~~~~~~~i~~~v~-~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSS 313 (814)
T COG1201 235 DEELWAALYERIAELVK-KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSS 313 (814)
T ss_pred ccchhHHHHHHHHHHHh-hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccc
Confidence 11 1 122333334444 44499999999999999999999887 89999999999999999999999999999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccCCC-CCccEEEEEEcCC
Q 007829 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC-GKTGIATTFINKN 501 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~-g~~g~~~~~~~~~ 501 (588)
++.|||+.+++.||+|+.|.++..++||+||+|+. |....++++..+.
T Consensus 314 LELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 314 LELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred hhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 99999999999999999999999999999999965 7777777777653
No 53
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.2e-42 Score=395.12 Aligned_cols=304 Identities=24% Similarity=0.309 Sum_probs=241.6
Q ss_pred HHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007829 154 ILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 154 l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
+.+.+++. |+ .||++|..++|.++.|+|++++||||||||. |.++++..+.. .++++|||+||++|+
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa 136 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHH
Confidence 34456555 76 8999999999999999999999999999995 55555544322 478999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCceEEEEEcCcch-----HHHHHHHhc-CCcEEEeChHHHHHHHHcccCCCCCcceeeec
Q 007829 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM-----RSQLEVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306 (588)
Q Consensus 233 ~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~-----~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvD 306 (588)
.|+++.++.++... ++.+..+.|+.+. .++...+.. +++|+|+||++|.+.+. .+....+++||||
T Consensus 137 ~Qi~~~l~~l~~~~------~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvD 208 (1176)
T PRK09401 137 EQVVEKLEKFGEKV------GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVD 208 (1176)
T ss_pred HHHHHHHHHHhhhc------CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEE
Confidence 99999999998754 6677777766542 233344453 58999999999998876 4556679999999
Q ss_pred CCccccc-----------CCCH-HHHHHHHHhhhh------------------------cceEEEEeeccchH-HHHHHH
Q 007829 307 EADRLVD-----------LGFE-DDIREVFDHFKA------------------------QRQTLLFSATMPTK-IQNFAR 349 (588)
Q Consensus 307 Eah~l~~-----------~~~~-~~i~~i~~~~~~------------------------~~q~l~~SAT~~~~-i~~~~~ 349 (588)
|||+|++ +||. +++..++..++. .+|+++||||+++. +..
T Consensus 209 EaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--- 285 (1176)
T PRK09401 209 DVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--- 285 (1176)
T ss_pred ChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---
Confidence 9999996 6885 678888877654 68999999999874 332
Q ss_pred HhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCcccc---HHHHHHHHHHcCCcEEEEeC
Q 007829 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKAD---VDDIHEYLLLKGVEAVAVHG 426 (588)
Q Consensus 350 ~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~---~~~l~~~L~~~g~~~~~ihg 426 (588)
.++..+..+.++.......++.+.+.... .+...+.+.+...+.++||||+++.. ++.++++|...|+++..+||
T Consensus 286 ~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg 363 (1176)
T PRK09401 286 KLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAIS 363 (1176)
T ss_pred HHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeC
Confidence 23344555666666555566666655443 34455566666656789999999888 99999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEE----cCccccCCCCCC-cceEEecCCCC------ChhHHHHHhcccCC
Q 007829 427 GKDQEEREYAISSFKAGKKDVLVA----TDVASKGLDFPD-IQHVINYDMPA------EIENYVHRIGRTGR 487 (588)
Q Consensus 427 ~~~~~~r~~~~~~F~~g~~~VLVa----T~~~~~GlDip~-v~~VI~~~~p~------s~~~y~QriGRagR 487 (588)
+| .+.++.|++|+++|||| |++++||||+|+ |++|||||+|. ..+.|.||+||+-.
T Consensus 364 ~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 364 GF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred cH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99 23469999999999999 699999999999 89999999998 67889999999963
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1e-40 Score=385.64 Aligned_cols=309 Identities=20% Similarity=0.221 Sum_probs=226.8
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCC--CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccc----c--cCCCCceE
Q 007829 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMP--IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMR----D--AGYPDLRT 256 (588)
Q Consensus 185 ~~a~TGsGKTl~~~lp~l~~~~~~~~~~~--~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~----~--~~~~~i~~ 256 (588)
++||||||||++|.||++..++....... .....+.++|||+|+++|+.|+++.++..+..+. . ...+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999998876321000 0112467999999999999999999876433221 0 11247899
Q ss_pred EEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCcceeeecCCcccccCCCHHH----HHHHHHhhhhcc
Q 007829 257 LLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTLDEADRLVDLGFEDD----IREVFDHFKAQR 331 (588)
Q Consensus 257 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-~~~l~~~~~lIvDEah~l~~~~~~~~----i~~i~~~~~~~~ 331 (588)
..++|+++..++...+++.++|+|+||++|..++.++ ...++++++|||||+|.|.+..++.. +..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999998887778888999999999998887654 34689999999999999997644444 444444455678
Q ss_pred eEEEEeeccchHHHHHHHHhcc-CCeEEEecCCCCcccceEEEeeehhhHH------------------------HHHHH
Q 007829 332 QTLLFSATMPTKIQNFARSALV-KPVTVNVGRAGAANLDVIQEVEYVKQEA------------------------KIVYL 386 (588)
Q Consensus 332 q~l~~SAT~~~~i~~~~~~~l~-~p~~i~~~~~~~~~~~v~~~~~~~~~~~------------------------k~~~l 386 (588)
|+|++|||+++. .++++.+.. .++.+.. .......++...+ ...... ....+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999874 455543322 3554432 2222222221111 111000 00122
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcC---------------------------------CcEEEEeCCCCHHHH
Q 007829 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKG---------------------------------VEAVAVHGGKDQEER 433 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g---------------------------------~~~~~ihg~~~~~~r 433 (588)
+..+. ...++||||||+..|+.++..|.... +.+.++||++++++|
T Consensus 238 l~~i~-~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 238 LDEVL-RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHh-cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 22222 35789999999999999999997531 125689999999999
Q ss_pred HHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCC-CCccEEEEE
Q 007829 434 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC-GKTGIATTF 497 (588)
Q Consensus 434 ~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~-g~~g~~~~~ 497 (588)
..+++.|++|++++||||+++++|||++++++||+|+.|.++.+|+||+||+||. |..+.++++
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 9999999999999999999999999999999999999999999999999999997 334445533
No 55
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.9e-40 Score=387.44 Aligned_cols=317 Identities=22% Similarity=0.289 Sum_probs=249.0
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007829 152 EPILKKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 152 ~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
..+.+.+++ .|| .||++|.++++.+++|+|++++||||||||++++++++... ..++++|||+||++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-----------~~g~~aLVl~PTre 133 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-----------LKGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-----------hcCCeEEEEECHHH
Confidence 345566776 599 69999999999999999999999999999996666655432 14678999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeeec
Q 007829 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvD 306 (588)
|+.|+++.+..++..+. .++++..++|+.+..++.. .+..+ ++|+|+||++|.+.+... ....+++||||
T Consensus 134 La~Qi~~~l~~l~~~~~----~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVD 207 (1638)
T PRK14701 134 LVKQTVEKIESFCEKAN----LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVD 207 (1638)
T ss_pred HHHHHHHHHHHHHhhcC----CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEE
Confidence 99999999999876541 1567888899988776643 34444 899999999998776542 22678999999
Q ss_pred CCccccc-----------CCCHHHHHH----HHH----------------------hhhhcce-EEEEeeccchHHHHHH
Q 007829 307 EADRLVD-----------LGFEDDIRE----VFD----------------------HFKAQRQ-TLLFSATMPTKIQNFA 348 (588)
Q Consensus 307 Eah~l~~-----------~~~~~~i~~----i~~----------------------~~~~~~q-~l~~SAT~~~~i~~~~ 348 (588)
|||+|++ +||.+++.. ++. .++..+| ++++|||+++.. ..
T Consensus 208 EAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~ 285 (1638)
T PRK14701 208 DVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DR 285 (1638)
T ss_pred CceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HH
Confidence 9999986 588887764 332 2234455 577999998641 12
Q ss_pred HHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccH---HHHHHHHHHcCCcEEEEe
Q 007829 349 RSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADV---DDIHEYLLLKGVEAVAVH 425 (588)
Q Consensus 349 ~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~---~~l~~~L~~~g~~~~~ih 425 (588)
...+..+..+.++.......++.+.+.......+ ..++..+...+.++||||+++..+ +.+++.|...|+++..+|
T Consensus 286 ~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h 364 (1638)
T PRK14701 286 VKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVS 364 (1638)
T ss_pred HHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEec
Confidence 2334566667777666555667766655544433 456666666667899999998864 899999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEc----CccccCCCCCC-cceEEecCCCC---ChhHHHHHh-------------cc
Q 007829 426 GGKDQEEREYAISSFKAGKKDVLVAT----DVASKGLDFPD-IQHVINYDMPA---EIENYVHRI-------------GR 484 (588)
Q Consensus 426 g~~~~~~r~~~~~~F~~g~~~VLVaT----~~~~~GlDip~-v~~VI~~~~p~---s~~~y~Qri-------------GR 484 (588)
|+ |..+++.|++|+++||||| ++++||||+|+ |++|||||+|+ +++.|.|.. ||
T Consensus 365 ~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~ 439 (1638)
T PRK14701 365 AK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEE 439 (1638)
T ss_pred ch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhh
Confidence 95 8899999999999999999 58999999999 99999999999 888887766 99
Q ss_pred cCCCCCccEE
Q 007829 485 TGRCGKTGIA 494 (588)
Q Consensus 485 agR~g~~g~~ 494 (588)
+||.|..+.+
T Consensus 440 a~~~g~~~~~ 449 (1638)
T PRK14701 440 ELKEGIPIEG 449 (1638)
T ss_pred hcccCCcchh
Confidence 9999866544
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.9e-39 Score=354.70 Aligned_cols=311 Identities=15% Similarity=0.170 Sum_probs=232.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHH---------HHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHH
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLV---------FVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYE 237 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~---------~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~ 237 (588)
..+|.++++.+++|+++|++|+||||||.+ |++|.+..+..-. ....++.++|++|||+||.|+..
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----PNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----cccCCcEEEEECcHHHHHHHHHH
Confidence 358999999999999999999999999976 3444444332100 01245689999999999999998
Q ss_pred HHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCH
Q 007829 238 VVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~ 317 (588)
.+.+..... .+.+..+.+.+||... .+.....++.+|+|+|++. ....++.+++|||||||.+..++
T Consensus 241 ~i~~~vg~~---~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~-- 307 (675)
T PHA02653 241 TLLKSLGFD---EIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG-- 307 (675)
T ss_pred HHHHHhCcc---ccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--
Confidence 887765321 2346778888999763 2222233467999999742 11247889999999999998876
Q ss_pred HHHHHHHHhhh-hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh----------hHHHHHHH
Q 007829 318 DDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK----------QEAKIVYL 386 (588)
Q Consensus 318 ~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~----------~~~k~~~l 386 (588)
+.+..++.... ..+|+++||||++..+..+ ..++.+|..+.+... ....+.+.+.... ...+ ..+
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~ 383 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEK-KNI 383 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHH-HHH
Confidence 55666665443 3469999999999888776 578888887776432 2233333321100 1111 112
Q ss_pred HHHhh----cCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHH-hcCCcEEEEEcCccccCCC
Q 007829 387 LECLQ----KTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSF-KAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 387 l~~l~----~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F-~~g~~~VLVaT~~~~~GlD 459 (588)
+..+. ..++.+||||+++.+++.+++.|... ++.+..+||++++. .++++.| ++|+.+|||||+++++|||
T Consensus 384 l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGID 461 (675)
T PHA02653 384 VTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVT 461 (675)
T ss_pred HHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcccc
Confidence 22222 23568999999999999999999887 79999999999985 4667777 6899999999999999999
Q ss_pred CCCcceEEecC---CCC---------ChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 460 FPDIQHVINYD---MPA---------EIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 460 ip~v~~VI~~~---~p~---------s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
+|+|++||++| .|. |.++|+||+|||||. ++|.|+.|+++..
T Consensus 462 Ip~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 462 IRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred ccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 99999999999 665 888999999999999 8999999998764
No 57
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.4e-39 Score=348.40 Aligned_cols=315 Identities=21% Similarity=0.252 Sum_probs=246.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++..++ .|+.++||+||++||.|.++.+..
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 54 79999999999999999 99999999999999999997653 478899999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHccc-------------------------C
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKK-------------------------M 295 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-------------------------~ 295 (588)
++..+ ++++.+++||.+.. ......+++|+|+|...| .|+|..+. .
T Consensus 167 l~~~l------Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (656)
T PRK12898 167 LYEAL------GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQL 238 (656)
T ss_pred HHhhc------CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhh
Confidence 98876 89999999997643 344556899999999887 45554321 1
Q ss_pred CCCCcceeeecCCcccc-cC-----------------C-----------------CH---------------HHHHHHHH
Q 007829 296 NLDNCRYLTLDEADRLV-DL-----------------G-----------------FE---------------DDIREVFD 325 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~-~~-----------------~-----------------~~---------------~~i~~i~~ 325 (588)
....+.+.||||+|.++ |. . |. ..++.++.
T Consensus 239 v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~ 318 (656)
T PRK12898 239 LLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAE 318 (656)
T ss_pred cccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhC
Confidence 24567899999999865 10 0 00 00001100
Q ss_pred ------------------hhhh----------------------------------------------------------
Q 007829 326 ------------------HFKA---------------------------------------------------------- 329 (588)
Q Consensus 326 ------------------~~~~---------------------------------------------------------- 329 (588)
.+..
T Consensus 319 ~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~ 398 (656)
T PRK12898 319 SLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLAR 398 (656)
T ss_pred cchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeee
Confidence 0000
Q ss_pred ---------cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhc---CCCCE
Q 007829 330 ---------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPV 397 (588)
Q Consensus 330 ---------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~---~~~~v 397 (588)
...+.+||||.+....++...+..+++.+...... .....+.+.+.....|+..+...+.. .+.++
T Consensus 399 It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 399 ITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred ehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 01357899999988888888888887776554443 22233334455666777777776654 36789
Q ss_pred EEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC---Ccc-----eEEec
Q 007829 398 LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP---DIQ-----HVINY 469 (588)
Q Consensus 398 iIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip---~v~-----~VI~~ 469 (588)
||||+|+..++.++..|...|+++..+||.++ +|+..+..|..+...|+|||++++||+||+ +|. |||+|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 99999999999999999999999999999865 455556666666678999999999999999 676 99999
Q ss_pred CCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 470 ~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
++|.|...|.||+|||||.|.+|.+++|++..+
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999999999999999763
No 58
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=325.04 Aligned_cols=279 Identities=35% Similarity=0.571 Sum_probs=228.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007829 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~ 299 (588)
|.+||+-|+|+|+.|++..+++|-.++ ..|.++..+++||.-.++|...+..|.||+|+||+|+.+++.+..+.+..
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~---~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHT---SNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhc---CChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 789999999999999999998886554 34678888999999999999999999999999999999999999999999
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhh------cceEEEEeeccch-HHHHHHHHhccCCeEEEecCCCCcccceEE
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKA------QRQTLLFSATMPT-KIQNFARSALVKPVTVNVGRAGAANLDVIQ 372 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~------~~q~l~~SAT~~~-~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~ 372 (588)
|+++|+||||.++..|+.+.+..+...++. ..|.++.|||+.. ++..+....+.-|..+...........+..
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999998888888777753 4589999999853 344455566666666655544433322222
Q ss_pred Eeeehhh--H----------------------------HHHHHHHHHh---------hc-CCCCEEEEeCccccHHHHHH
Q 007829 373 EVEYVKQ--E----------------------------AKIVYLLECL---------QK-TPPPVLIFCENKADVDDIHE 412 (588)
Q Consensus 373 ~~~~~~~--~----------------------------~k~~~ll~~l---------~~-~~~~viIF~~s~~~~~~l~~ 412 (588)
.+..+.. . ..+.....++ .+ ...+.||||.++.+|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 2211110 0 0011111111 11 23589999999999999999
Q ss_pred HHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCC
Q 007829 413 YLLLKG---VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 413 ~L~~~g---~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g 489 (588)
++..+| +.++++||+..+.+|...++.|+.+..++||||++++||+||.++-.+||..+|.+..+|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998874 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCC
Q 007829 490 KTGIATTFINKN 501 (588)
Q Consensus 490 ~~g~~~~~~~~~ 501 (588)
+-|.++.++...
T Consensus 604 rmglaislvat~ 615 (725)
T KOG0349|consen 604 RMGLAISLVATV 615 (725)
T ss_pred hcceeEEEeecc
Confidence 999999999765
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.1e-38 Score=341.58 Aligned_cols=305 Identities=18% Similarity=0.189 Sum_probs=222.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.++++.++.+++.++++|||+|||+++...+ ..+.. ....++|||+||++|+.|+.+.+.+++
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~---------~~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE---------NYEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh---------cCCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999998765432 22222 123489999999999999999999986
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHH
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i 323 (588)
. .+...+..+.+|.... .+.+|+|+||+++..... ..+.++++||+||||++.. ..+..+
T Consensus 183 ~------~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~i 242 (501)
T PHA02558 183 L------FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSI 242 (501)
T ss_pred c------ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHH
Confidence 3 2234455566664432 346999999999865432 2467899999999999975 456777
Q ss_pred HHhhhhcceEEEEeeccchHHHHHHH-HhccCCeEEEecCC-----CC-cccceE--------------------EEeee
Q 007829 324 FDHFKAQRQTLLFSATMPTKIQNFAR-SALVKPVTVNVGRA-----GA-ANLDVI--------------------QEVEY 376 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT~~~~i~~~~~-~~l~~p~~i~~~~~-----~~-~~~~v~--------------------~~~~~ 376 (588)
+..++..+++++||||++........ ..+..|+...+... +. ....+. ..+..
T Consensus 243 l~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 78887778999999999753221110 11112222111100 00 000000 00000
Q ss_pred h-hhHHH---HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc-
Q 007829 377 V-KQEAK---IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT- 451 (588)
Q Consensus 377 ~-~~~~k---~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT- 451 (588)
. ....+ +..+...+.+.+.++||||+++.+++.+++.|...|+++..+||++++++|..+++.|++|+..|||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~ 402 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASY 402 (501)
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEc
Confidence 0 11111 222333334456789999999999999999999999999999999999999999999999999999998
Q ss_pred CccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEE
Q 007829 452 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498 (588)
Q Consensus 452 ~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~ 498 (588)
+++++|+|+|++++||+++++.|...|+||+||++|.+..+...+++
T Consensus 403 ~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 403 GVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 89999999999999999999999999999999999997665444444
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1e-38 Score=333.50 Aligned_cols=296 Identities=19% Similarity=0.191 Sum_probs=209.9
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++. -.+..++|
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---------~~~~~~~~ 62 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------QKADRVIIALPTRATINAMYRRAKELFG---------SNLGLLHS 62 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------CCCCeEEEEeehHHHHHHHHHHHHHHhC---------cccEEeec
Confidence 58999999999999999999977543 2467899999999999999999999863 13344444
Q ss_pred CcchH------------HHHHHHh------cCCcEEEeChHHHHHHHHccc----CCC--CCcceeeecCCcccccCCCH
Q 007829 262 GVDMR------------SQLEVVK------RGVHIVVATPGRLKDMLAKKK----MNL--DNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 262 g~~~~------------~~~~~l~------~~~~IvV~Tp~~l~~~l~~~~----~~l--~~~~~lIvDEah~l~~~~~~ 317 (588)
+.... ....... ...+|+|+||+++...+.... ..+ -..++||+||+|.+.++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~ 142 (358)
T TIGR01587 63 SSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLA 142 (358)
T ss_pred cHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHH
Confidence 33211 0001111 136899999999988776521 111 12378999999999987654
Q ss_pred HHHHHHHHhhh-hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeee-----hhhHHHHHHHHHHhh
Q 007829 318 DDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-----VKQEAKIVYLLECLQ 391 (588)
Q Consensus 318 ~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~-----~~~~~k~~~ll~~l~ 391 (588)
. +..++..+. ...|+++||||+|..+.+++......+............. ..+.+.. ......+..++..+
T Consensus 143 ~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~- 219 (358)
T TIGR01587 143 L-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRF-ERHRFIKIESDKVGEISSLERLLEFI- 219 (358)
T ss_pred H-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccccc-ccccceeeccccccCHHHHHHHHHHh-
Confidence 3 666666554 4679999999999888877766544322111111100000 0111111 11222333344333
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHH----HHHHhcCCcEEEEEcCccccCCCCCCcce
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLKGV--EAVAVHGGKDQEEREYA----ISSFKAGKKDVLVATDVASKGLDFPDIQH 465 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~r~~~----~~~F~~g~~~VLVaT~~~~~GlDip~v~~ 465 (588)
..++++||||++++.++.+++.|...+. .+..+||++++.+|... ++.|++|+.+|||||+++++|+|++ +++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCE
Confidence 2467999999999999999999988776 49999999999999764 8899999999999999999999995 889
Q ss_pred EEecCCCCChhHHHHHhcccCCCCCcc----EEEEEEcCC
Q 007829 466 VINYDMPAEIENYVHRIGRTGRCGKTG----IATTFINKN 501 (588)
Q Consensus 466 VI~~~~p~s~~~y~QriGRagR~g~~g----~~~~~~~~~ 501 (588)
||++..| ++.|+||+||+||.|+.+ ..++|....
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9998776 789999999999988643 555555544
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-37 Score=313.55 Aligned_cols=320 Identities=23% Similarity=0.329 Sum_probs=241.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...++.+|......++.+ |.+++.|||.|||+++++.+...+.+. .+ ++|+++||+-|+.|+.+.+.++
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHHHHH
Confidence 347899999998888766 999999999999999988888777652 34 8999999999999999999998
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
+. .|.-.++.++|.....+....+.. .+|+|+||+.+.+-+..+.+++.++.++|||||||-....-...+..
T Consensus 82 ~~------ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~ 154 (542)
T COG1111 82 TG------IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAK 154 (542)
T ss_pred hC------CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHH
Confidence 63 557788899999888877666666 49999999999988889999999999999999999776543445555
Q ss_pred HHHhhhhcceEEEEeeccchHH---HHHHHHhccCCeEEEe---------------------------------------
Q 007829 323 VFDHFKAQRQTLLFSATMPTKI---QNFARSALVKPVTVNV--------------------------------------- 360 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~i---~~~~~~~l~~p~~i~~--------------------------------------- 360 (588)
-+-.....+.++++|||+.... ++.+..+-...+.+..
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 4455566778999999984322 2211111111111100
Q ss_pred ------------cCCCC-------cc---cceEEE---------------------------------eeehh-------
Q 007829 361 ------------GRAGA-------AN---LDVIQE---------------------------------VEYVK------- 378 (588)
Q Consensus 361 ------------~~~~~-------~~---~~v~~~---------------------------------~~~~~------- 378 (588)
..... .. ...... ..|+.
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 00000 00 000000 00000
Q ss_pred -------------------------------hHHHHHHHHHHhh-----cCCCCEEEEeCccccHHHHHHHHHHcCCcEE
Q 007829 379 -------------------------------QEAKIVYLLECLQ-----KTPPPVLIFCENKADVDDIHEYLLLKGVEAV 422 (588)
Q Consensus 379 -------------------------------~~~k~~~ll~~l~-----~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~ 422 (588)
...|+..+.+.+. ..+.++|||++.+..++.+.++|...|..+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 0012222222222 1245899999999999999999999988875
Q ss_pred -EE--------eCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccE
Q 007829 423 -AV--------HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 493 (588)
Q Consensus 423 -~i--------hg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~ 493 (588)
.+ ..||+|.++.++++.|+.|.++|||||+++++|||+|+++.||+|++-.|+..++||.|||||. +.|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 33 2579999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred EEEEEcCC
Q 007829 494 ATTFINKN 501 (588)
Q Consensus 494 ~~~~~~~~ 501 (588)
++++++.+
T Consensus 474 v~vLvt~g 481 (542)
T COG1111 474 VVVLVTEG 481 (542)
T ss_pred EEEEEecC
Confidence 99999988
No 62
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.7e-38 Score=362.86 Aligned_cols=293 Identities=23% Similarity=0.315 Sum_probs=225.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 152 EPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.++.+.+.+.....|+++|..+++.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTreL 133 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHHH
Confidence 34556666654457999999999999999999999999999996 66776655432 47899999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCce---EEEEEcCcchHHHH---HHHhc-CCcEEEeChHHHHHHHHcccCCCCCcceee
Q 007829 232 ARQTYEVVEQFLTPMRDAGYPDLR---TLLCIGGVDMRSQL---EVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~---~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lI 304 (588)
|.|+++.+..++..+ +++ +.+++||.+..++. ..+.+ +++|+|+||++|.+.+..-. . .++++|
T Consensus 134 a~Qi~~~l~~l~~~~------~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iV 204 (1171)
T TIGR01054 134 VIQVAEKISSLAEKA------GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIF 204 (1171)
T ss_pred HHHHHHHHHHHHHhc------CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEE
Confidence 999999999998654 333 34577888776543 33444 58999999999988776421 2 899999
Q ss_pred ecCCccccc-----------CCCHHH-HHHHHH----------------------hhhhcce--EEEEeec-cchHHHHH
Q 007829 305 LDEADRLVD-----------LGFEDD-IREVFD----------------------HFKAQRQ--TLLFSAT-MPTKIQNF 347 (588)
Q Consensus 305 vDEah~l~~-----------~~~~~~-i~~i~~----------------------~~~~~~q--~l~~SAT-~~~~i~~~ 347 (588)
|||||+|++ +||.++ +..++. .++..+| +++|||| +|..+..
T Consensus 205 vDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~- 283 (1171)
T TIGR01054 205 VDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA- 283 (1171)
T ss_pred EeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH-
Confidence 999999998 788764 555432 3344455 5679999 5655432
Q ss_pred HHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCcc---ccHHHHHHHHHHcCCcEEEE
Q 007829 348 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENK---ADVDDIHEYLLLKGVEAVAV 424 (588)
Q Consensus 348 ~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~---~~~~~l~~~L~~~g~~~~~i 424 (588)
.++.++..+.++.......++.+.+..... +...+.+.+...+.++||||+++ ..|+.+++.|...|+++..+
T Consensus 284 --~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~l 359 (1171)
T TIGR01054 284 --KLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAY 359 (1171)
T ss_pred --HHcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEE
Confidence 234455556666665555666666544333 12344555555567899999999 99999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCcEEEEE----cCccccCCCCCC-cceEEecCCCC
Q 007829 425 HGGKDQEEREYAISSFKAGKKDVLVA----TDVASKGLDFPD-IQHVINYDMPA 473 (588)
Q Consensus 425 hg~~~~~~r~~~~~~F~~g~~~VLVa----T~~~~~GlDip~-v~~VI~~~~p~ 473 (588)
||++++ .+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 360 hg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 360 HATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred eCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999974 6899999999999999 599999999999 89999999995
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=322.44 Aligned_cols=335 Identities=21% Similarity=0.325 Sum_probs=269.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
..+++.+|+.+.+.|+..|++.+.|+|.-++.. ++.|+|.+++.+|+||||++.-++-+..++. .|.+-
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----------~g~Km 264 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----------GGKKM 264 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------CCCeE
Confidence 467889999999999999999999999999988 5699999999999999999999998887766 57889
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcccCCCC
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE----VVKRGVHIVVATPGRLKDMLAKKKMNLD 298 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~----~l~~~~~IvV~Tp~~l~~~l~~~~~~l~ 298 (588)
||++|..+||+|-++.|+.-..++ ++.+.+-.|-.-++..-. .....+||||+|++.+ |++.+....+.
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~L------glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg~~lg 337 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKL------GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTGKDLG 337 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcc------cceEEEEechhhhcccCCccccCCCCCCcEEEeechhH-HHHHHcCCccc
Confidence 999999999999999999877777 788877777544433321 1123589999999999 44444447799
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHh---hhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEee
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDH---FKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~---~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~ 375 (588)
++..||+||+|.+.+...++.+..++.. +-+..|+|.+|||..++ .++++.+--+++... .....+..++.
T Consensus 338 diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlv 411 (830)
T COG1202 338 DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLV 411 (830)
T ss_pred ccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeee
Confidence 9999999999999987666666655544 44578999999999776 467777666665543 23334445555
Q ss_pred ehh-hHHHHHHHHHHhh---------cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007829 376 YVK-QEAKIVYLLECLQ---------KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 376 ~~~-~~~k~~~ll~~l~---------~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~ 445 (588)
+.. ...|+..+..... ...+++|||++|+..|..++.+|..+|+++..||+|++..+|..+...|.++++
T Consensus 412 f~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l 491 (830)
T COG1202 412 FARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL 491 (830)
T ss_pred eecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc
Confidence 554 3444443333322 135799999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCccccCCCCCCcceEE---ecCCCC-ChhHHHHHhcccCCCCC--ccEEEEEEcCC
Q 007829 446 DVLVATDVASKGLDFPDIQHVI---NYDMPA-EIENYVHRIGRTGRCGK--TGIATTFINKN 501 (588)
Q Consensus 446 ~VLVaT~~~~~GlDip~v~~VI---~~~~p~-s~~~y~QriGRagR~g~--~g~~~~~~~~~ 501 (588)
.++|+|-+++.|+|||+-++++ -++.-| |+..|.||.|||||.+. .|.+++++.+.
T Consensus 492 ~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 492 AAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999999877655 233334 89999999999999874 58888888765
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.8e-38 Score=345.26 Aligned_cols=316 Identities=22% Similarity=0.281 Sum_probs=238.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++..++ .|+.++|++||++||.|.++.+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-----------~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-----------EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-----------cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 65 79999999999998887 99999999999999999986654 377899999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-c
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~-~ 313 (588)
++..+ +++++++.|+.+...+... ..+++|+|+||++| .|+|..+ ...++.+.++||||||.|+ |
T Consensus 142 l~~~l------Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiD 214 (790)
T PRK09200 142 VYEFL------GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLD 214 (790)
T ss_pred HHhhc------CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceec
Confidence 99877 9999999999884333333 34689999999999 5665543 2356889999999999976 1
Q ss_pred C---------------CCHHHHHHHHHhhhhc------------------------------------------------
Q 007829 314 L---------------GFEDDIREVFDHFKAQ------------------------------------------------ 330 (588)
Q Consensus 314 ~---------------~~~~~i~~i~~~~~~~------------------------------------------------ 330 (588)
. .+...+..+...+...
T Consensus 215 ea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 294 (790)
T PRK09200 215 EAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALR 294 (790)
T ss_pred cCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHH
Confidence 0 0011111111111000
Q ss_pred ---------------------------------------------------------------------ceEEEEeeccc
Q 007829 331 ---------------------------------------------------------------------RQTLLFSATMP 341 (588)
Q Consensus 331 ---------------------------------------------------------------------~q~l~~SAT~~ 341 (588)
..+.+||+|..
T Consensus 295 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~ 374 (790)
T PRK09200 295 AHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAK 374 (790)
T ss_pred HHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCCh
Confidence 12345666654
Q ss_pred hHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcC
Q 007829 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
..-.+|...+-...+.+.. ..+....+. ....+.....|...++..+.. .+.|+||||+|+..++.++..|...|
T Consensus 375 t~~~e~~~~Y~l~v~~IPt-~kp~~r~d~-~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g 452 (790)
T PRK09200 375 TEEKEFFEVYNMEVVQIPT-NRPIIRIDY-PDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG 452 (790)
T ss_pred HHHHHHHHHhCCcEEECCC-CCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4434443333222222111 111111111 122344566777777776643 67899999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC---CCcc-----eEEecCCCCChhHHHHHhcccCCCCC
Q 007829 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF---PDIQ-----HVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 419 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDi---p~v~-----~VI~~~~p~s~~~y~QriGRagR~g~ 490 (588)
+++..+||.+.+.++..+...++.| +|+|||++++||+|+ |+|. |||+|++|.|...|.||+|||||.|.
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGD 530 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCC
Confidence 9999999999998888887777766 799999999999999 6998 99999999999999999999999999
Q ss_pred ccEEEEEEcCCC
Q 007829 491 TGIATTFINKNQ 502 (588)
Q Consensus 491 ~g~~~~~~~~~~ 502 (588)
+|.+++|++..+
T Consensus 531 ~G~s~~~is~eD 542 (790)
T PRK09200 531 PGSSQFFISLED 542 (790)
T ss_pred CeeEEEEEcchH
Confidence 999999998763
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-37 Score=348.66 Aligned_cols=302 Identities=20% Similarity=0.237 Sum_probs=231.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccccc
Q 007829 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDA 249 (588)
Q Consensus 170 Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~ 249 (588)
-.+.+..+.+++++|++|+||||||.+|.++++.... .+++++|+.|||++|.|+++.+.+.+..
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~---- 71 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGE---- 71 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCC----
Confidence 3455666678899999999999999999999987541 3468999999999999999988654421
Q ss_pred CCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCc-ccccCCCHHH-HHHHHHhh
Q 007829 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD-RLVDLGFEDD-IREVFDHF 327 (588)
Q Consensus 250 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah-~l~~~~~~~~-i~~i~~~~ 327 (588)
..+..+++.+++.+ ......+|+|+|||+|.+++.. ...++++++|||||+| ++++.++... +..+...+
T Consensus 72 -~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l 143 (819)
T TIGR01970 72 -AVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSL 143 (819)
T ss_pred -CcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhc
Confidence 11455655555432 1234579999999999998876 4579999999999999 5777655433 34556667
Q ss_pred hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHH-----HHHHHHhhcCCCCEEEEeC
Q 007829 328 KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI-----VYLLECLQKTPPPVLIFCE 402 (588)
Q Consensus 328 ~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~-----~~ll~~l~~~~~~viIF~~ 402 (588)
+.+.|+|+||||++... ...++.++..+.+... ...+.+.+.......++ ..+...+....+.+|||++
T Consensus 144 r~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlp 217 (819)
T TIGR01970 144 REDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLP 217 (819)
T ss_pred CCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 78899999999999763 3456655544444322 12233333222222221 2333444455678999999
Q ss_pred ccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC-----
Q 007829 403 NKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE----- 474 (588)
Q Consensus 403 s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s----- 474 (588)
+..+++.+++.|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||+|++||++++|+.
T Consensus 218 g~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~ 297 (819)
T TIGR01970 218 GQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDP 297 (819)
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccc
Confidence 99999999999987 4789999999999999999999999999999999999999999999999999999853
Q ss_pred -------------hhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 475 -------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 -------------~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
..+|.||+|||||. .+|.|+.|+++.
T Consensus 298 ~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 298 KTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred ccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 34689999999999 899999999865
No 66
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-39 Score=313.54 Aligned_cols=324 Identities=20% Similarity=0.294 Sum_probs=247.9
Q ss_pred HHHHHHHHC-CCCCC-cHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 153 PILKKLKAK-GIVQP-TPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 153 ~l~~~l~~~-g~~~p-~~~Q~~~i~~il~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.+.++|++. |+.++ ++.|.+|+..+..+ .|+.+++|||+||++||+||+|.+ +...||+.|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLi 71 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLI 71 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHH
Confidence 456677776 77655 89999999998855 699999999999999999999964 34899999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---H---hcCCcEEEeChHHHHHHHHc----ccCCCCC
Q 007829 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---V---KRGVHIVVATPGRLKDMLAK----KKMNLDN 299 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l---~~~~~IvV~Tp~~l~~~l~~----~~~~l~~ 299 (588)
+|..++.+.+.++ .+++..+.+..+..+..+. + +....+++.||+....-..+ .-.+-+.
T Consensus 72 ALIkDQiDHL~~L----------KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~ 141 (641)
T KOG0352|consen 72 ALIKDQIDHLKRL----------KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDV 141 (641)
T ss_pred HHHHHHHHHHHhc----------CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhce
Confidence 9999999999887 4555555554444444332 2 23578999999976433222 2233456
Q ss_pred cceeeecCCcccccCC--CHHHHHHHHH--hhhhcceEEEEeeccchHHHHHHH--HhccCCeEEEecCCCCcccceEEE
Q 007829 300 CRYLTLDEADRLVDLG--FEDDIREVFD--HFKAQRQTLLFSATMPTKIQNFAR--SALVKPVTVNVGRAGAANLDVIQE 373 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~--~~~~i~~i~~--~~~~~~q~l~~SAT~~~~i~~~~~--~~l~~p~~i~~~~~~~~~~~v~~~ 373 (588)
+.|+||||||+..+|| |+++...+-. ..-+....+.+|||.++.+++.+- ..+.+|+.+.-... -..++...
T Consensus 142 L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~--FR~NLFYD 219 (641)
T KOG0352|consen 142 LRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT--FRDNLFYD 219 (641)
T ss_pred eeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc--hhhhhhHH
Confidence 7899999999999998 6665544322 222345689999999999887543 34567776543322 22233333
Q ss_pred eeehhh-HHHHHHH----HHHhhc----------CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Q 007829 374 VEYVKQ-EAKIVYL----LECLQK----------TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438 (588)
Q Consensus 374 ~~~~~~-~~k~~~l----l~~l~~----------~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~ 438 (588)
+.+... ++.+..| ..+|.+ ..+..||||.|++.|+.++-.|...|+++.+||+|+...+|..+.+
T Consensus 220 ~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 220 NHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred HHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHH
Confidence 322221 1112222 223321 1346899999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 439 ~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
.|.++++.|++||..+++|+|-|+|++|||+++|.|+..|.|..|||||+|....|-+++..++
T Consensus 300 ~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 300 KWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred HHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999874
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.4e-37 Score=345.59 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=230.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccccc
Q 007829 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDA 249 (588)
Q Consensus 170 Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~ 249 (588)
-.+.+..+.+++++++.|+||||||.+|.++++... ...++++|++|||++|.|+++.+.+....
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~-----------~~~~~ilvlqPrR~aA~qia~rva~~l~~---- 74 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG-----------GINGKIIMLEPRRLAARNVAQRLAEQLGE---- 74 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC-----------CcCCeEEEECChHHHHHHHHHHHHHHhCc----
Confidence 345566667889999999999999999999888542 12348999999999999999988655321
Q ss_pred CCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcc-cccCCCH-HHHHHHHHhh
Q 007829 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR-LVDLGFE-DDIREVFDHF 327 (588)
Q Consensus 250 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~-l~~~~~~-~~i~~i~~~~ 327 (588)
..+..++..+++.+.. ....+|+|+|||+|.+++.. ...++++++|||||+|. .++..+. ..+..+++.+
T Consensus 75 -~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l 146 (812)
T PRK11664 75 -KPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGL 146 (812)
T ss_pred -ccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC
Confidence 1256677777664322 13468999999999998876 45799999999999996 4443321 2334556667
Q ss_pred hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHH-----HHHHHhhcCCCCEEEEeC
Q 007829 328 KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV-----YLLECLQKTPPPVLIFCE 402 (588)
Q Consensus 328 ~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~-----~ll~~l~~~~~~viIF~~ 402 (588)
+.+.|+++||||++.. .+ ..++.++..+.+... ...+.+.+.......++. .+...+....+.+|||++
T Consensus 147 r~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlp 220 (812)
T PRK11664 147 RDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLP 220 (812)
T ss_pred CccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 7888999999999875 23 455655544443322 223433333333333322 234444555789999999
Q ss_pred ccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC-----
Q 007829 403 NKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE----- 474 (588)
Q Consensus 403 s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s----- 474 (588)
++.+++.+++.|.. .++.+..+||++++.+|..++..|++|+.+|||||+++++|||||+|++||++++++.
T Consensus 221 g~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~ 300 (812)
T PRK11664 221 GVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDP 300 (812)
T ss_pred CHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccc
Confidence 99999999999987 5788999999999999999999999999999999999999999999999999888753
Q ss_pred -------------hhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 475 -------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 -------------~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
-++|.||.|||||. ..|.|+.++++.
T Consensus 301 ~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 301 KTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred cCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 35799999999999 699999999865
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=341.13 Aligned_cols=334 Identities=22% Similarity=0.304 Sum_probs=252.2
Q ss_pred CCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE
Q 007829 146 KDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI 224 (588)
Q Consensus 146 ~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li 224 (588)
+...+++.+.+.++..++..+.+.|+.++...+ +++|+++++|||||||+++++.+++.+.+ .+.++||
T Consensus 12 ~~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~----------~~~k~vY 81 (766)
T COG1204 12 SKVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE----------GGGKVVY 81 (766)
T ss_pred ccccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh----------cCCcEEE
Confidence 344578889999998899888888888887755 66999999999999999999999998876 3678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceee
Q 007829 225 VCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 225 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lI 304 (588)
|||+++||.++++.++++ ..+ ++++...+|+.+.... ...+++|+|+||++|-..+.+....+..+++||
T Consensus 82 ivPlkALa~Ek~~~~~~~-~~~------GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvV 151 (766)
T COG1204 82 IVPLKALAEEKYEEFSRL-EEL------GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVV 151 (766)
T ss_pred EeChHHHHHHHHHHhhhH-Hhc------CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEE
Confidence 999999999999999943 222 9999999999775542 224589999999999666666666788999999
Q ss_pred ecCCcccccCCCHHHHHHHHHhhhh---cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcc--cceEEEeeehh-
Q 007829 305 LDEADRLVDLGFEDDIREVFDHFKA---QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN--LDVIQEVEYVK- 378 (588)
Q Consensus 305 vDEah~l~~~~~~~~i~~i~~~~~~---~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~--~~v~~~~~~~~- 378 (588)
+||+|.+.+...+..+..|...+.. ..|++++|||+|+.. +++.-.-.+++ ...-+..... ....+.+....
T Consensus 152 iDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~ 229 (766)
T COG1204 152 IDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE-EVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADG 229 (766)
T ss_pred EeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHH-HHHHHhCCccc-ccCCCCcccccCCccceEEEEecC
Confidence 9999999988666777777666543 379999999999762 34433322332 1111111111 11111111111
Q ss_pred --------hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc---------------------------------
Q 007829 379 --------QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--------------------------------- 417 (588)
Q Consensus 379 --------~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--------------------------------- 417 (588)
.......++....+.++++||||+++..+...++.|...
T Consensus 230 ~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l 309 (766)
T COG1204 230 KKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEEL 309 (766)
T ss_pred ccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHH
Confidence 122333333333456779999999999999999998731
Q ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----ecC-----CCCChhHHHHHhcc
Q 007829 418 ----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----NYD-----MPAEIENYVHRIGR 484 (588)
Q Consensus 418 ----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI----~~~-----~p~s~~~y~QriGR 484 (588)
-..++.+|+|++.++|..+.+.|+.|+++|||||++++.|+|+|.-.+|| .|+ .+-++-+|.|++||
T Consensus 310 ~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GR 389 (766)
T COG1204 310 AELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGR 389 (766)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCc
Confidence 01256789999999999999999999999999999999999999988777 566 45578899999999
Q ss_pred cCCCCC--ccEEEEEEcCC
Q 007829 485 TGRCGK--TGIATTFINKN 501 (588)
Q Consensus 485 agR~g~--~g~~~~~~~~~ 501 (588)
|||.|- .|.++++.+..
T Consensus 390 AGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 390 AGRPGYDDYGEAIILATSH 408 (766)
T ss_pred CCCCCcCCCCcEEEEecCc
Confidence 999974 46677776444
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=341.03 Aligned_cols=343 Identities=21% Similarity=0.325 Sum_probs=276.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007829 151 PEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
...+..+|.+.|+..|+++|.+|+..+.+|+|+|++.+||||||.+|++|++.+++.. ...++|+|.||++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~---------~~a~AL~lYPtnA 126 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD---------PSARALLLYPTNA 126 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC---------cCccEEEEechhh
Confidence 3455888889999999999999999999999999999999999999999999999884 3448899999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc----cCCCCCcceeeec
Q 007829 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK----KMNLDNCRYLTLD 306 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~----~~~l~~~~~lIvD 306 (588)
||+.+.+.+.++...+.. .++...+.|++...+....+.+.++|++|||.+|..++.+. ...+++++|||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~----~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvD 202 (851)
T COG1205 127 LANDQAERLRELISDLPG----KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVD 202 (851)
T ss_pred hHhhHHHHHHHHHHhCCC----cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEe
Confidence 999999999999887622 58888899998888777778889999999999997766543 2347789999999
Q ss_pred CCcccccCCCHHHHHHHHHhh-------hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeeh--
Q 007829 307 EADRLVDLGFEDDIREVFDHF-------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV-- 377 (588)
Q Consensus 307 Eah~l~~~~~~~~i~~i~~~~-------~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~-- 377 (588)
|+|.+-.. |+..+..+++.+ +...|+|+.|||+.+. .+++..+........+...+.........+...
T Consensus 203 ElHtYrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~ 280 (851)
T COG1205 203 ELHTYRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPI 280 (851)
T ss_pred cceecccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcc
Confidence 99998654 666666555544 3467999999999766 456666666665553444443333322222221
Q ss_pred ---------hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHH----HHHHHcC----CcEEEEeCCCCHHHHHHHHHHH
Q 007829 378 ---------KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIH----EYLLLKG----VEAVAVHGGKDQEEREYAISSF 440 (588)
Q Consensus 378 ---------~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~----~~L~~~g----~~~~~ihg~~~~~~r~~~~~~F 440 (588)
........+...+...+-++|+|+.++..++.+. ..+...+ ..+..++|++...+|.++...|
T Consensus 281 ~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~ 360 (851)
T COG1205 281 RELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEF 360 (851)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHH
Confidence 2334455566666677889999999999999997 4455555 6688999999999999999999
Q ss_pred hcCCcEEEEEcCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHH
Q 007829 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 508 (588)
Q Consensus 441 ~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~-s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~ 508 (588)
++|+..++++|+++.-|+|+-+++.||+++.|. +..++.||.||+||.++.+..+.....+.-..+..
T Consensus 361 ~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~ 429 (851)
T COG1205 361 KEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYL 429 (851)
T ss_pred hcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhh
Confidence 999999999999999999999999999999999 89999999999999998888877777554333333
No 70
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-37 Score=346.12 Aligned_cols=323 Identities=21% Similarity=0.304 Sum_probs=259.0
Q ss_pred HHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007829 152 EPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 152 ~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
+.+...+... |...++|-|.++|..++.|+|+++.+|||.||++||+||++- .++.+|||.|..+
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--------------~~gitvVISPL~S 315 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--------------LGGVTVVISPLIS 315 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc--------------cCCceEEeccHHH
Confidence 4566666665 999999999999999999999999999999999999999984 2458999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HHhc---CCcEEEeChHHHHHH--HHcccCCCCC---
Q 007829 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VVKR---GVHIVVATPGRLKDM--LAKKKMNLDN--- 299 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~---~~~IvV~Tp~~l~~~--l~~~~~~l~~--- 299 (588)
|++.+...+... +|....+.++....++.. .+.. .++|++.||+++... +......+..
T Consensus 316 Lm~DQv~~L~~~----------~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~ 385 (941)
T KOG0351|consen 316 LMQDQVTHLSKK----------GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGL 385 (941)
T ss_pred HHHHHHHhhhhc----------CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCe
Confidence 999877766443 788888888877764433 3333 489999999988432 2222233444
Q ss_pred cceeeecCCcccccCC--CHHHHHHHHHhh--hhcceEEEEeeccchHHHHHHHHhcc--CCeEEEecCCCCcccceEEE
Q 007829 300 CRYLTLDEADRLVDLG--FEDDIREVFDHF--KAQRQTLLFSATMPTKIQNFARSALV--KPVTVNVGRAGAANLDVIQE 373 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~--~~~~i~~i~~~~--~~~~q~l~~SAT~~~~i~~~~~~~l~--~p~~i~~~~~~~~~~~v~~~ 373 (588)
+.++|+||||+...|| |++..+.+.... -+...+|.+|||.+..++..+-..|. ++..+. ......+....
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~ye 462 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYE 462 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEE
Confidence 8899999999999998 666655543322 12357999999999998877666654 444222 22344566666
Q ss_pred eeehhhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc
Q 007829 374 VEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT 451 (588)
Q Consensus 374 ~~~~~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT 451 (588)
|...........++..+.. ....+||||.++.+|+.++..|+..|+.+..||+||+..+|..+...|..++++|+|||
T Consensus 463 V~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivAT 542 (941)
T KOG0351|consen 463 VSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVAT 542 (941)
T ss_pred EEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 6555533333344444433 35689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 452 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 452 ~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
-++++|||.|+|+.||||.+|+|++.|+|.+|||||+|....|++|+...
T Consensus 543 VAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 543 VAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred eeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 99999999999999999999999999999999999999999999999877
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=6.8e-37 Score=330.84 Aligned_cols=315 Identities=22% Similarity=0.262 Sum_probs=240.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|..+.+.++.|+ |+.++||+|||++|.+|++...+. |..++||+||++||.|.++.+..
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 54 79999999999988887 999999999999999999655443 45699999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCccccc-
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLVD- 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~~- 313 (588)
++..+ ++++.+++|+.+...+.... .++|+|+||++| .|++..+ ...++.+.++||||+|+|+-
T Consensus 120 l~~~L------GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LID 191 (745)
T TIGR00963 120 VYRFL------GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILID 191 (745)
T ss_pred HhccC------CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHH
Confidence 99877 89999999998876554433 479999999999 8888765 35678999999999999762
Q ss_pred C--------C----C---HHHHHHHHHhhhh-------------------------------------------------
Q 007829 314 L--------G----F---EDDIREVFDHFKA------------------------------------------------- 329 (588)
Q Consensus 314 ~--------~----~---~~~i~~i~~~~~~------------------------------------------------- 329 (588)
. | . ......+.+.+..
T Consensus 192 eaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~ 271 (745)
T TIGR00963 192 EARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALK 271 (745)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHH
Confidence 1 1 0 0000111111100
Q ss_pred --------------------------------------------------------------------cceEEEEeeccc
Q 007829 330 --------------------------------------------------------------------QRQTLLFSATMP 341 (588)
Q Consensus 330 --------------------------------------------------------------------~~q~l~~SAT~~ 341 (588)
...+.+||+|..
T Consensus 272 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 351 (745)
T TIGR00963 272 AKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAK 351 (745)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcH
Confidence 012345566655
Q ss_pred hHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcC
Q 007829 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
....+|...+-...+.+....+ ....+ .....+.....++..+++.+ ...+.|+||||+++..++.+++.|...|
T Consensus 352 te~~E~~~iY~l~vv~IPtnkp-~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 352 TEEEEFEKIYNLEVVVVPTNRP-VIRKD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred HHHHHHHHHhCCCEEEeCCCCC-eeeee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 4444444433333222211111 11111 11223444566776666655 4578899999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC-------cceEEecCCCCChhHHHHHhcccCCCCCc
Q 007829 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD-------IQHVINYDMPAEIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 419 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~-------v~~VI~~~~p~s~~~y~QriGRagR~g~~ 491 (588)
+++..+||. +.+|+..+..|+.+...|+|||++++||+||+. .-|||++++|.|...|.|++|||||.|.+
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 999999998 889999999999999999999999999999998 55999999999999999999999999999
Q ss_pred cEEEEEEcCCC
Q 007829 492 GIATTFINKNQ 502 (588)
Q Consensus 492 g~~~~~~~~~~ 502 (588)
|.+..|++..+
T Consensus 508 G~s~~~ls~eD 518 (745)
T TIGR00963 508 GSSRFFLSLED 518 (745)
T ss_pred cceEEEEeccH
Confidence 99999999874
No 72
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=297.69 Aligned_cols=331 Identities=22% Similarity=0.354 Sum_probs=263.3
Q ss_pred CCCCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 145 FKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 145 f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
-++++++.+..+.|++. .+.+++|.|..+|++.++|.|++++.|||.||++||.||++.. ...+|
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------------dg~al 138 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------------DGFAL 138 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------------CCceE
Confidence 35778899999998887 7789999999999999999999999999999999999999853 56799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-------hcCCcEEEeChHHHHH---HHHc-
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-------KRGVHIVVATPGRLKD---MLAK- 292 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-------~~~~~IvV~Tp~~l~~---~l~~- 292 (588)
||||..+|+..+.-.++.+ ++....+...++..+ ...+ .....+++.||+.+.. ++.+
T Consensus 139 vi~plislmedqil~lkql----------gi~as~lnansske~-~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl 207 (695)
T KOG0353|consen 139 VICPLISLMEDQILQLKQL----------GIDASMLNANSSKEE-AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL 207 (695)
T ss_pred eechhHHHHHHHHHHHHHh----------CcchhhccCcccHHH-HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH
Confidence 9999999999888888887 555555555444322 2222 1246899999999842 2222
Q ss_pred -ccCCCCCcceeeecCCcccccCC--CHHHHH--HHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcc
Q 007829 293 -KKMNLDNCRYLTLDEADRLVDLG--FEDDIR--EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN 367 (588)
Q Consensus 293 -~~~~l~~~~~lIvDEah~l~~~~--~~~~i~--~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~ 367 (588)
+.+....++++.+||+|+..+|| |+++.. .+++.--+...++++|||.++.+.+.++..+.....+. .+.+...
T Consensus 208 eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~t-f~a~fnr 286 (695)
T KOG0353|consen 208 EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFT-FRAGFNR 286 (695)
T ss_pred HHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhe-eecccCC
Confidence 35566778999999999999998 444433 23332223456999999999999888888775432222 2333444
Q ss_pred cceEEEeeeh--hhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 007829 368 LDVIQEVEYV--KQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 368 ~~v~~~~~~~--~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g 443 (588)
.+....+... ..++-+..+...+.. .+...||||-+.++|+.++..|...|+.+..||..|.+.+|.-+.+.|..|
T Consensus 287 ~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ 366 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG 366 (695)
T ss_pred CCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc
Confidence 5555554433 244445556565554 356789999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHH-------------------------------------------
Q 007829 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH------------------------------------------- 480 (588)
Q Consensus 444 ~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~Q------------------------------------------- 480 (588)
+++|+|||-++++|||-|+|++|||..+|+|+++|.|
T Consensus 367 eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsek 446 (695)
T KOG0353|consen 367 EIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEK 446 (695)
T ss_pred ceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecch
Confidence 9999999999999999999999999999999999999
Q ss_pred HhcccCCCCCccEEEEEEcCC
Q 007829 481 RIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 481 riGRagR~g~~g~~~~~~~~~ 501 (588)
..||+||+|.+..|+.++.-.
T Consensus 447 esgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 447 ESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hccccccCCCcccEEEEechH
Confidence 679999999999999998654
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.3e-36 Score=330.73 Aligned_cols=314 Identities=21% Similarity=0.248 Sum_probs=226.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+++|..+...+..| .|+.++||+|||++|++|++..++. |+.++||+|+++||.|+.+.+..+..
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----------g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT-----------GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc-----------CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 4555555555555454 6999999999999999998766543 55699999999999999999999988
Q ss_pred cccccCCCCceEEEEEcCcc---hHHHHHHHhcCCcEEEeChHHH-HHHHHc------ccCCCCCcceeeecCCcccc-c
Q 007829 245 PMRDAGYPDLRTLLCIGGVD---MRSQLEVVKRGVHIVVATPGRL-KDMLAK------KKMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~---~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~------~~~~l~~~~~lIvDEah~l~-~ 313 (588)
.+ ++.+.+++++.. ..........+++|+++||++| .+.|.. ....++.+.++|+||||.|+ |
T Consensus 137 ~L------GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD 210 (762)
T TIGR03714 137 WL------GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD 210 (762)
T ss_pred hc------CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc
Confidence 76 888888877622 2223334445799999999999 565532 23457889999999999985 1
Q ss_pred CC---------------CHHHHHHHHHhhhh-------------------------------------------------
Q 007829 314 LG---------------FEDDIREVFDHFKA------------------------------------------------- 329 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~------------------------------------------------- 329 (588)
.. ....+..+...+..
T Consensus 211 eartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~ 290 (762)
T TIGR03714 211 SAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALR 290 (762)
T ss_pred cCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHH
Confidence 10 00011111111100
Q ss_pred --------------------------------------------------------------------cceEEEEeeccc
Q 007829 330 --------------------------------------------------------------------QRQTLLFSATMP 341 (588)
Q Consensus 330 --------------------------------------------------------------------~~q~l~~SAT~~ 341 (588)
...+.+||+|..
T Consensus 291 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 370 (762)
T TIGR03714 291 AHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK 370 (762)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh
Confidence 013455666655
Q ss_pred hHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcC
Q 007829 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
....+|.+.+-...+.+....+ ... .-.....+.....|+..+++.+.+ .+.|+||||+|+..++.++..|...|
T Consensus 371 ~~~~Ef~~iY~l~v~~IPt~kp-~~r-~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 371 VAEKEFIETYSLSVVKIPTNKP-IIR-IDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred hHHHHHHHHhCCCEEEcCCCCC-eee-eeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC
Confidence 5445554433222222211111 111 111223455666777777776643 57799999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC---------CcceEEecCCCCChhHHHHHhcccCCCC
Q 007829 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP---------DIQHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 419 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip---------~v~~VI~~~~p~s~~~y~QriGRagR~g 489 (588)
+++..+||.+.+.++..+...++.| .|+|||++++||+||+ ++.+|++|++|....+ .||+|||||.|
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 9999999999999888777766666 7999999999999999 9999999999988776 99999999999
Q ss_pred CccEEEEEEcCCC
Q 007829 490 KTGIATTFINKNQ 502 (588)
Q Consensus 490 ~~g~~~~~~~~~~ 502 (588)
.+|.+++|++..+
T Consensus 526 ~~G~s~~~is~eD 538 (762)
T TIGR03714 526 DPGSSQFFVSLED 538 (762)
T ss_pred CceeEEEEEccch
Confidence 9999999998763
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.3e-35 Score=334.43 Aligned_cols=321 Identities=25% Similarity=0.354 Sum_probs=238.9
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...|+++|.+++..++.+ |+++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.+.++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~----------~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH----------KKGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH----------hCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 457899999999998887 9999999999999999998887662 24678999999999999999999988
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
+.. +..++..++|+.+..... .+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+..
T Consensus 82 ~~~------~~~~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~ 154 (773)
T PRK13766 82 LNI------PEEKIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAE 154 (773)
T ss_pred hCC------CCceEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHH
Confidence 632 245777888887765443 3444579999999999888777788889999999999999876543344444
Q ss_pred HHHhhhhcceEEEEeeccchH---HHHHHHHhccCCeEEE--------------------ecC-----------------
Q 007829 323 VFDHFKAQRQTLLFSATMPTK---IQNFARSALVKPVTVN--------------------VGR----------------- 362 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~---i~~~~~~~l~~p~~i~--------------------~~~----------------- 362 (588)
.+.......++++||||+... +......+....+.+. +..
T Consensus 155 ~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 155 RYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred HHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 444444566799999998422 2222222111111000 000
Q ss_pred -------CCCc---c--cc----------eEEEe------------------------------------ee--------
Q 007829 363 -------AGAA---N--LD----------VIQEV------------------------------------EY-------- 376 (588)
Q Consensus 363 -------~~~~---~--~~----------v~~~~------------------------------------~~-------- 376 (588)
.+.. . .. +.+.. .+
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 0000 0 00 00000 00
Q ss_pred ----------------------------hhhHHHHHHHHHHhh-----cCCCCEEEEeCccccHHHHHHHHHHcCCcEEE
Q 007829 377 ----------------------------VKQEAKIVYLLECLQ-----KTPPPVLIFCENKADVDDIHEYLLLKGVEAVA 423 (588)
Q Consensus 377 ----------------------------~~~~~k~~~ll~~l~-----~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ 423 (588)
.....|+..+.+.+. ..+.++||||+++..|+.++++|...|+.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 000123333444442 24679999999999999999999999999999
Q ss_pred EeCC--------CCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEE
Q 007829 424 VHGG--------KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495 (588)
Q Consensus 424 ihg~--------~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~ 495 (588)
+||. +++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.++
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~ 473 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVV 473 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEE
Confidence 9986 999999999999999999999999999999999999999999999999999999999999865 8888
Q ss_pred EEEcCCC
Q 007829 496 TFINKNQ 502 (588)
Q Consensus 496 ~~~~~~~ 502 (588)
+++..+.
T Consensus 474 ~l~~~~t 480 (773)
T PRK13766 474 VLIAKGT 480 (773)
T ss_pred EEEeCCC
Confidence 8887663
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=8.6e-35 Score=301.41 Aligned_cols=293 Identities=18% Similarity=0.202 Sum_probs=204.8
Q ss_pred HHHHHHHHHhcCCC--EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007829 169 IQVQGLPVVLSGRD--MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 169 ~Q~~~i~~il~g~d--vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
+|.++++.+..+.+ ++++||||||||.+|++|++. .+.+++|++|+++|++|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~--------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH--------------GENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH--------------cCCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999998874 788999999999999999884 13458999999999999999999998644
Q ss_pred cccCCCCceEEEEEcCcchH--HHH------------------HHHhcCCcEEEeChHHHHHHHHcc----c----CCCC
Q 007829 247 RDAGYPDLRTLLCIGGVDMR--SQL------------------EVVKRGVHIVVATPGRLKDMLAKK----K----MNLD 298 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~--~~~------------------~~l~~~~~IvV~Tp~~l~~~l~~~----~----~~l~ 298 (588)
.. ..+..+..+.|.+... ... ......++|+++||+.|..++... . ..+.
T Consensus 67 ~~--~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 67 KP--ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred CC--CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 21 1145555566642211 000 001235789999999996655431 1 1257
Q ss_pred CcceeeecCCcccccCCC-----HHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHh--ccCCeEEEecCC--------
Q 007829 299 NCRYLTLDEADRLVDLGF-----EDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA--LVKPVTVNVGRA-------- 363 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~-----~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~--l~~p~~i~~~~~-------- 363 (588)
.+++|||||+|.+..++. ......++.......+++++|||+++.+...+... +..++....+..
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~ 224 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPE 224 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChh
Confidence 899999999999875432 12233344444445789999999999888887765 445543333320
Q ss_pred ---CCc-------ccceEEEeeeh--hhHHHHHHHHHHh----h-cCCCCEEEEeCccccHHHHHHHHHHcC--CcEEEE
Q 007829 364 ---GAA-------NLDVIQEVEYV--KQEAKIVYLLECL----Q-KTPPPVLIFCENKADVDDIHEYLLLKG--VEAVAV 424 (588)
Q Consensus 364 ---~~~-------~~~v~~~~~~~--~~~~k~~~ll~~l----~-~~~~~viIF~~s~~~~~~l~~~L~~~g--~~~~~i 424 (588)
... ...+...+... .....+..+++.+ . ..+.++||||+++..++.++..|+..+ +.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l 304 (357)
T TIGR03158 225 LEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRI 304 (357)
T ss_pred hhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEee
Confidence 000 01232222221 1122233333333 2 245689999999999999999999864 578889
Q ss_pred eCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccC
Q 007829 425 HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG 486 (588)
Q Consensus 425 hg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRag 486 (588)
||.+++.+|.++ ++.+|||||+++++|||++.+ +|| ++ |.+++.|+||+||+|
T Consensus 305 ~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999999998754 478999999999999999987 566 45 899999999999997
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.3e-34 Score=302.78 Aligned_cols=370 Identities=22% Similarity=0.281 Sum_probs=282.8
Q ss_pred CHHHHHHHH-HCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 151 PEPILKKLK-AKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 151 ~~~l~~~l~-~~g~~~p~~~Q~~~i~~il~g------~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
...+.+.+. ...| ++|..|.+++..|... .+-++++..|||||++++++++..+- .|.++.
T Consensus 248 ~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----------~G~Q~A 315 (677)
T COG1200 248 NGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----------AGYQAA 315 (677)
T ss_pred cHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----------cCCeeE
Confidence 344555544 4466 7999999999999843 36699999999999999999998763 588999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhcC-CcEEEeChHHHHHHHHcccCCCCC
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKRG-VHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~ 299 (588)
+++||--||.|.++.+.+++.++ ++++..++|....... ...+..| ++|||+| +.|.+..+.+++
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~------~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~ 384 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPL------GIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHN 384 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhc------CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecc
Confidence 99999999999999999999988 8999999997665444 3445555 9999999 888899999999
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhh-cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKA-QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK 378 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~ 378 (588)
+.++|+||-|| |+-.-+..+..-.. .+.+++||||+-|... +-....+-.+-.+...+.-...+...+....
T Consensus 385 LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTL--Alt~fgDldvS~IdElP~GRkpI~T~~i~~~ 457 (677)
T COG1200 385 LGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTL--ALTAFGDLDVSIIDELPPGRKPITTVVIPHE 457 (677)
T ss_pred eeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHH--HHHHhccccchhhccCCCCCCceEEEEeccc
Confidence 99999999999 77888888888777 6889999999987643 4444443333333333333444555544444
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCccccH--------HHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007829 379 QEAKIVYLLECLQKTPPPVLIFCENKADV--------DDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s~~~~--------~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 448 (588)
...++...+..-...+.++.+.|+-+++. +.+++.|... ++.+..+||.|+.+++++++.+|++|+++||
T Consensus 458 ~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 458 RRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 44443333333233688999999987654 4666667643 6779999999999999999999999999999
Q ss_pred EEcCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhh
Q 007829 449 VATDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~-s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 527 (588)
|||.+.+.|+|+|+++++|+.+.-. ..++..|-.||+||.+..+.|+.++.+...+..-..|. .+.+
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~------------im~~ 605 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLK------------IMRE 605 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHH------------HHHh
Confidence 9999999999999999999888654 78899999999999999999999998773322112211 2233
Q ss_pred ccCchh---hHHHHhhccCCCCCcccCCCCcccccCcc
Q 007829 528 LNDPME---DVDAITNASGVKGCAYCGGLGHRIRDCPK 562 (588)
Q Consensus 528 l~~~~~---~~~~~~~~~~~~~c~~cg~~g~~~~~~~~ 562 (588)
-.+++. ..-++++.|...|-.+.|..++++++.-.
T Consensus 606 t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f~~Adl~~ 643 (677)
T COG1200 606 TTDGFVIAEEDLKLRGPGELLGTRQSGLPEFRVADLVR 643 (677)
T ss_pred cCCcceehhhhHhccCCccccCCcccCCcceEEeeHHh
Confidence 333332 12355667778899999999999988754
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=301.85 Aligned_cols=318 Identities=25% Similarity=0.310 Sum_probs=226.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...++.+|.+....+| |+|+|+++|||+|||.++...++.++.+. +..++||++||+-|+.|+...+..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---------p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---------PKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---------CcceEEEeeCCchHHHHHHHHHhhc
Confidence 3468999999999999 99999999999999999999998887652 4578999999999999999888777
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeeecCCcccccCCCHHHHH
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~l~~~~~lIvDEah~l~~~~~~~~i~ 321 (588)
+. +..+....||.........+-...+|+|+||+.|.+.|..... .++.+.++||||||+-....-...+.
T Consensus 130 ~~--------~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 130 LI--------PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred cC--------cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHH
Confidence 64 2445556666444444445555679999999999888876533 36899999999999987765445554
Q ss_pred -HHHHhhhhcceEEEEeeccchHHHHHH---HHhc----------------------cCCeEE-----------------
Q 007829 322 -EVFDHFKAQRQTLLFSATMPTKIQNFA---RSAL----------------------VKPVTV----------------- 358 (588)
Q Consensus 322 -~i~~~~~~~~q~l~~SAT~~~~i~~~~---~~~l----------------------~~p~~i----------------- 358 (588)
..+..-....|+|++|||+..+..... ..+. ..|+.+
T Consensus 202 r~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 444443344499999999854322210 0000 000000
Q ss_pred -------------E------------ecCCCCcccceEEE--e------------------e------e---------hh
Q 007829 359 -------------N------------VGRAGAANLDVIQE--V------------------E------Y---------VK 378 (588)
Q Consensus 359 -------------~------------~~~~~~~~~~v~~~--~------------------~------~---------~~ 378 (588)
. .......+..-.+. + . + ..
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 0 00000000000000 0 0 0 00
Q ss_pred -------------------------------hHHHHHHHHHHhhc-----CCCCEEEEeCccccHHHHHHHHHH---cCC
Q 007829 379 -------------------------------QEAKIVYLLECLQK-----TPPPVLIFCENKADVDDIHEYLLL---KGV 419 (588)
Q Consensus 379 -------------------------------~~~k~~~ll~~l~~-----~~~~viIF~~s~~~~~~l~~~L~~---~g~ 419 (588)
...++..+.+.+.+ ...++||||.++..|+.|..+|.. .|+
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 01222233333321 345899999999999999999973 244
Q ss_pred cEEEEe--------CCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCc
Q 007829 420 EAVAVH--------GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 420 ~~~~ih--------g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~ 491 (588)
.+..+- .+|+|.+..++++.|++|+++|||||+++++||||+.|++||.||.-.|+...+||.|| ||+ +.
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~n 519 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RN 519 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cC
Confidence 444443 38999999999999999999999999999999999999999999999999999999999 998 57
Q ss_pred cEEEEEEcC
Q 007829 492 GIATTFINK 500 (588)
Q Consensus 492 g~~~~~~~~ 500 (588)
|.++.+.+.
T Consensus 520 s~~vll~t~ 528 (746)
T KOG0354|consen 520 SKCVLLTTG 528 (746)
T ss_pred CeEEEEEcc
Confidence 777777773
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.3e-34 Score=305.52 Aligned_cols=326 Identities=21% Similarity=0.276 Sum_probs=244.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
+|..+..+|..++|.+. +..|+|+|||||||||.+|+|.+|+.+.+.+.. -....++-+++||+|+++||..+++.+.
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~-~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ-GDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc-cccccCCceEEEEechHHHHHHHHHHHh
Confidence 67889999999999998 678999999999999999999999988763221 1223457799999999999999999998
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC----CCCCcceeeecCCcccccCCC
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM----NLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~----~l~~~~~lIvDEah~l~~~~~ 316 (588)
+-+.++ ++.|..++|++.....- + ..++|+|+||+++ |.+.++.. .++.+++||+||+|.+.+. .
T Consensus 186 kkl~~~------gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-R 254 (1230)
T KOG0952|consen 186 KKLAPL------GISVRELTGDTQLTKTE--I-ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-R 254 (1230)
T ss_pred hhcccc------cceEEEecCcchhhHHH--H-HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-c
Confidence 887776 89999999987765442 2 3489999999999 77776533 3677899999999999875 5
Q ss_pred HHHHHHHHHhhh-------hcceEEEEeeccchHHHHHHHHhccCC-eEEEecCCCCcccceEEEeeehh----------
Q 007829 317 EDDIREVFDHFK-------AQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAANLDVIQEVEYVK---------- 378 (588)
Q Consensus 317 ~~~i~~i~~~~~-------~~~q~l~~SAT~~~~i~~~~~~~l~~p-~~i~~~~~~~~~~~v~~~~~~~~---------- 378 (588)
++.++.|+.+.. ...++|++|||+|+- .+.+.-+-.+| .-+.............+.+.-.+
T Consensus 255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~ 333 (1230)
T KOG0952|consen 255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKN 333 (1230)
T ss_pred cchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhh
Confidence 577777776654 335799999999975 34444333332 11111111122233333332111
Q ss_pred -hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC-----------------------CcEEEEeCCCCHHHHH
Q 007829 379 -QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG-----------------------VEAVAVHGGKDQEERE 434 (588)
Q Consensus 379 -~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-----------------------~~~~~ihg~~~~~~r~ 434 (588)
.+.....+.+.++ .+++++|||.+++.....++.|...+ .....+|+||..++|.
T Consensus 334 ~d~~~~~kv~e~~~-~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 334 IDEVCYDKVVEFLQ-EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 1222334444443 46799999999999999999886531 2356789999999999
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----ecCCCC------ChhHHHHHhcccCCC--CCccEEEEEEcCC
Q 007829 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----NYDMPA------EIENYVHRIGRTGRC--GKTGIATTFINKN 501 (588)
Q Consensus 435 ~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI----~~~~p~------s~~~y~QriGRagR~--g~~g~~~~~~~~~ 501 (588)
.+.+.|..|.++||+||..++.|+|+|+--++| .||.-. ++.+.+|.+|||||. +..|.++++.+.+
T Consensus 413 l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 413 LVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 999999999999999999999999999877666 344333 577889999999996 5778888887765
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-33 Score=302.68 Aligned_cols=318 Identities=20% Similarity=0.246 Sum_probs=216.9
Q ss_pred CCCcHHHHHHHHHHh-cC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVL-SG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il-~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..++|+|.+++..++ +| +..++++|||+|||++.+..+.. + +.++|||||+..|+.||.+.|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 468999999999988 44 47899999999999997755432 1 3458999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------ccCCCCCcceeeecCCcccc
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--------KKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~--------~~~~l~~~~~lIvDEah~l~ 312 (588)
+++. .+...+..++|+.... ......|+|+|+..+.....+ ..+.-..+++||+||||++.
T Consensus 320 ~~~~------l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp 388 (732)
T TIGR00603 320 MWST------IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP 388 (732)
T ss_pred HhcC------CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc
Confidence 9853 1244566666653221 112368999999876432111 11223568899999999985
Q ss_pred cCCCHHHHHHHHHhhhhcceEEEEeeccchHHHH--HHHHhccCCeEEEecCCCC------cccceEEE-ee--------
Q 007829 313 DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN--FARSALVKPVTVNVGRAGA------ANLDVIQE-VE-------- 375 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~--~~~~~l~~p~~i~~~~~~~------~~~~v~~~-~~-------- 375 (588)
. ..++.++..+... ..+++|||+...-.. .+. ++..|.......... +....... +.
T Consensus 389 A----~~fr~il~~l~a~-~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 389 A----AMFRRVLTIVQAH-CKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred H----HHHHHHHHhcCcC-cEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 4 5566677766543 479999999643211 111 222333322211100 00000000 00
Q ss_pred ------------ehhhHHHHHH---HHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Q 007829 376 ------------YVKQEAKIVY---LLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440 (588)
Q Consensus 376 ------------~~~~~~k~~~---ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F 440 (588)
+.....|+.. ++......+.++||||++...++.++..| .+..+||.+++.+|..+++.|
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHH
Confidence 0011122222 23222235679999999999888888877 356799999999999999999
Q ss_pred hcC-CcEEEEEcCccccCCCCCCcceEEecCCC-CChhHHHHHhcccCCCCCccEE-------EEEEcCCCChh-HHHHH
Q 007829 441 KAG-KKDVLVATDVASKGLDFPDIQHVINYDMP-AEIENYVHRIGRTGRCGKTGIA-------TTFINKNQSET-TLLDL 510 (588)
Q Consensus 441 ~~g-~~~VLVaT~~~~~GlDip~v~~VI~~~~p-~s~~~y~QriGRagR~g~~g~~-------~~~~~~~~~~~-~~~~l 510 (588)
++| .+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ ++|++.+..+. +...=
T Consensus 538 r~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 538 QHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred HhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 975 78999999999999999999999999998 4999999999999999876665 88888875433 33344
Q ss_pred HHHHHHh
Q 007829 511 KHLLQEA 517 (588)
Q Consensus 511 ~~~l~~~ 517 (588)
..+|.+.
T Consensus 618 q~fl~~q 624 (732)
T TIGR00603 618 QRFLVDQ 624 (732)
T ss_pred HHHHHHC
Confidence 4555443
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4.2e-31 Score=293.81 Aligned_cols=309 Identities=18% Similarity=0.231 Sum_probs=218.7
Q ss_pred CCCcHHHHHHHHHHhcC---CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLSG---RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g---~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..+|+.|.++++.++.+ +++++.|+||||||.+|+.++...+. .|.++|||+||++|+.|+++.++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----------~g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----------QGKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHHHHHHHHHH
Confidence 36899999999999974 78999999999999999887765542 36789999999999999999998
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCC
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~ 316 (588)
+.+ +.++..++|+.+..++... +. ..++|+|+|+..+. ..+.++++|||||+|....+..
T Consensus 212 ~~f---------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~ 275 (679)
T PRK05580 212 ARF---------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQ 275 (679)
T ss_pred HHh---------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccC
Confidence 864 5678899999877655433 33 35799999998763 4578899999999998764321
Q ss_pred ---HHHHHH--HHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCC-CCcccceEEEeeehh---------hHH
Q 007829 317 ---EDDIRE--VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA-GAANLDVIQEVEYVK---------QEA 381 (588)
Q Consensus 317 ---~~~i~~--i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~-~~~~~~v~~~~~~~~---------~~~ 381 (588)
.-..+. ++.......+++++|||++......+..-. ...+..... ..........+.... -..
T Consensus 276 ~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~g~--~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 276 EGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQGR--YRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred cCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhccc--eeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 111222 233345678999999998876555443221 111111111 111111111111100 001
Q ss_pred HHHHHHHHhhcCCCCEEEEeCcc---------------------------------------------------------
Q 007829 382 KIVYLLECLQKTPPPVLIFCENK--------------------------------------------------------- 404 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~--------------------------------------------------------- 404 (588)
.+...+....+.+.++|||+|++
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 11122222223566899998752
Q ss_pred ---ccHHHHHHHHHHc--CCcEEEEeCCCC--HHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE--ecCCCCC-
Q 007829 405 ---ADVDDIHEYLLLK--GVEAVAVHGGKD--QEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI--NYDMPAE- 474 (588)
Q Consensus 405 ---~~~~~l~~~L~~~--g~~~~~ihg~~~--~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI--~~~~p~s- 474 (588)
..++.+++.|... +.++..+|+++. ..+++.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|.+.+
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 2466888888775 889999999986 46789999999999999999999999999999999985 4454433
Q ss_pred ---------hhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 475 ---------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 ---------~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
...|+|++||+||.+..|.+++.....
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 367999999999999999998766543
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.1e-32 Score=309.37 Aligned_cols=296 Identities=21% Similarity=0.311 Sum_probs=205.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHhhc
Q 007829 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP----SRELARQTYEVVEQFLTP 245 (588)
Q Consensus 170 Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P----tr~La~Q~~~~~~~~~~~ 245 (588)
-.+.+..+..++.+|++|+||||||. ++|.+..... .+....+++.-| +++||.++.+++..-+
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g--------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l-- 146 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG--------RGVKGLIGHTQPRRLAARTVANRIAEELETEL-- 146 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC--------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh--
Confidence 34455566677778888999999997 6885433211 011123333446 4577777777776422
Q ss_pred ccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCc-ccccCCCHHH-HHHH
Q 007829 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD-RLVDLGFEDD-IREV 323 (588)
Q Consensus 246 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah-~l~~~~~~~~-i~~i 323 (588)
+-.+++-+. ...+ ...+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... ++.+
T Consensus 147 -------G~~VGY~vr---f~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~l 212 (1294)
T PRK11131 147 -------GGCVGYKVR---FNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKEL 212 (1294)
T ss_pred -------cceeceeec---Cccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHh
Confidence 111222111 1111 12468999999999999987654 49999999999999 6888887643 3333
Q ss_pred HHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh------hHHHHHHHHHHh----hcC
Q 007829 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK------QEAKIVYLLECL----QKT 393 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~------~~~k~~~ll~~l----~~~ 393 (588)
+.. .++.|+|+||||++.. .+.+.+...|+ +.+.... ..+...+.... ..+.+..++..+ ...
T Consensus 213 L~~-rpdlKvILmSATid~e--~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~ 285 (1294)
T PRK11131 213 LPR-RPDLKVIITSATIDPE--RFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREG 285 (1294)
T ss_pred hhc-CCCceEEEeeCCCCHH--HHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCC
Confidence 332 2467999999999754 66666555554 4443221 12222222221 122333333322 235
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCc---EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKGVE---AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~---~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~ 470 (588)
.+.+|||+++..+++.+++.|...++. +..+||++++.+|..+++. .|..+|||||+++++|||+|+|++||+++
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECC
Confidence 678999999999999999999988765 6789999999999999876 57889999999999999999999999986
Q ss_pred ---------------CC---CChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 471 ---------------MP---AEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 471 ---------------~p---~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+| .|.++|.||+|||||. .+|.|+.|+++.
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 34 3568999999999999 799999999865
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-31 Score=300.53 Aligned_cols=332 Identities=20% Similarity=0.234 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~--g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
..|.|+|..++..++. ...+++...+|.|||+-+.+.+...+.. +...++|||||+ .|+.||..++.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~---------g~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT---------GRAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc---------CCCCcEEEEcCH-HHHHHHHHHHHH
Confidence 4699999999887764 3479999999999998886665544333 345579999998 899999999876
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHH--HHhcCCcEEEeChHHHHHHHH-cccCCCCCcceeeecCCcccccCC--C
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLE--VVKRGVHIVVATPGRLKDMLA-KKKMNLDNCRYLTLDEADRLVDLG--F 316 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IvV~Tp~~l~~~l~-~~~~~l~~~~~lIvDEah~l~~~~--~ 316 (588)
.+ ++...++.++........ ......+++|+|.+.+...-. ...+.-..+++|||||||++.... .
T Consensus 221 kF---------~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~ 291 (956)
T PRK04914 221 RF---------NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAP 291 (956)
T ss_pred Hh---------CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCc
Confidence 54 444444433321100000 000135899999987753111 112223478999999999997311 1
Q ss_pred HHHHHHHHHhh-hhcceEEEEeeccch-HH------------------HHHH-------------H--------------
Q 007829 317 EDDIREVFDHF-KAQRQTLLFSATMPT-KI------------------QNFA-------------R-------------- 349 (588)
Q Consensus 317 ~~~i~~i~~~~-~~~~q~l~~SAT~~~-~i------------------~~~~-------------~-------------- 349 (588)
....+ .+..+ .....++++||||-. .. ..|. .
T Consensus 292 s~~y~-~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~ 370 (956)
T PRK04914 292 SREYQ-VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALN 370 (956)
T ss_pred CHHHH-HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHH
Confidence 12222 22222 234568999999831 00 0000 0
Q ss_pred ---HhccC-----------------------------------CeEEEecCCCCc--ccceEEEee--------------
Q 007829 350 ---SALVK-----------------------------------PVTVNVGRAGAA--NLDVIQEVE-------------- 375 (588)
Q Consensus 350 ---~~l~~-----------------------------------p~~i~~~~~~~~--~~~v~~~~~-------------- 375 (588)
.++.. .+.+...+.... .......+.
T Consensus 371 ~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~ 450 (956)
T PRK04914 371 ALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVS 450 (956)
T ss_pred HHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHh
Confidence 00000 000000000000 000000000
Q ss_pred -----------------------ehhhHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHH-HcCCcEEEEeCCCCH
Q 007829 376 -----------------------YVKQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLL-LKGVEAVAVHGGKDQ 430 (588)
Q Consensus 376 -----------------------~~~~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~-~~g~~~~~ihg~~~~ 430 (588)
+.....|+..+++.+... ..++||||+++..+..+++.|+ ..|+.+..+||+|++
T Consensus 451 ~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~ 530 (956)
T PRK04914 451 LEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSI 530 (956)
T ss_pred HHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCH
Confidence 011123455666666543 6799999999999999999994 679999999999999
Q ss_pred HHHHHHHHHHhcC--CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHH
Q 007829 431 EEREYAISSFKAG--KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 508 (588)
Q Consensus 431 ~~r~~~~~~F~~g--~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~ 508 (588)
.+|.++++.|+++ ..+|||||+++++|+|++.+++|||||+|+|+..|.||+||+||.|+++.+.+++... ......
T Consensus 531 ~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~-~~t~~e 609 (956)
T PRK04914 531 IERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL-EGTAQE 609 (956)
T ss_pred HHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC-CCCHHH
Confidence 9999999999984 5999999999999999999999999999999999999999999999999887777554 333444
Q ss_pred HHHHHHHH
Q 007829 509 DLKHLLQE 516 (588)
Q Consensus 509 ~l~~~l~~ 516 (588)
.+..++.+
T Consensus 610 ~i~~~~~~ 617 (956)
T PRK04914 610 RLFRWYHE 617 (956)
T ss_pred HHHHHHhh
Confidence 44454444
No 83
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=1.4e-30 Score=249.93 Aligned_cols=202 Identities=45% Similarity=0.773 Sum_probs=184.0
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE
Q 007829 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI 224 (588)
Q Consensus 145 f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li 224 (588)
|+++++++.+.+.|.+.|+..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... ...++++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------~~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP------KKDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc------ccCCceEEE
Confidence 68899999999999999999999999999999999999999999999999999999999887642 125789999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceee
Q 007829 225 VCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 225 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lI 304 (588)
++|+++|+.|+...+..+.... ++++..+.|+.+.......+..+++|+|+||++|.+++.+....+.+++++|
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT------NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLV 148 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEE
Confidence 9999999999999999986542 7888999999888777777777899999999999999988888899999999
Q ss_pred ecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEE
Q 007829 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTV 358 (588)
Q Consensus 305 vDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i 358 (588)
+||+|.+.+.++...+..+++.++..+|++++|||+++.+.+++..++.+|+.+
T Consensus 149 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 149 LDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999899999999999999999999999988765
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.1e-30 Score=282.90 Aligned_cols=315 Identities=20% Similarity=0.248 Sum_probs=231.2
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+--.+..|+ |+.++||+|||++|.+|++..++. |..++||+||++||.|.++.+..+.
T Consensus 81 ~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~-----------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS-----------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 368888888777776766 999999999999999999977653 4569999999999999999999998
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc-cCCC-----CCcceeeecCCcccc-cCC
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK-KMNL-----DNCRYLTLDEADRLV-DLG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~-~~~l-----~~~~~lIvDEah~l~-~~~ 315 (588)
..+ ++++.+++||.+...+...+ .++|+|+||++| .|+|..+ .+.+ ..+.++||||||.|+ |..
T Consensus 148 ~~l------GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 148 EFL------GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred ccc------CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 876 89999999998877665444 589999999999 8999876 3334 589999999999976 110
Q ss_pred ---------------CHHHHHHHHHhhhhc--------------ce----------------------------------
Q 007829 316 ---------------FEDDIREVFDHFKAQ--------------RQ---------------------------------- 332 (588)
Q Consensus 316 ---------------~~~~i~~i~~~~~~~--------------~q---------------------------------- 332 (588)
....+..+...+... .+
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~ 299 (896)
T PRK13104 220 RTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNI 299 (896)
T ss_pred CCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhh
Confidence 111122222222111 11
Q ss_pred --------------------------------------------------------------------------------
Q 007829 333 -------------------------------------------------------------------------------- 332 (588)
Q Consensus 333 -------------------------------------------------------------------------------- 332 (588)
T Consensus 300 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y 379 (896)
T PRK13104 300 MLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMY 379 (896)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc
Confidence
Q ss_pred --EEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccH
Q 007829 333 --TLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADV 407 (588)
Q Consensus 333 --~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~ 407 (588)
+.+||+|......+|...+-...+.|....+ ... .-.....|.....|+..+++.+ ...+.|+||||+|+..+
T Consensus 380 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp-~~R-~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~s 457 (896)
T PRK13104 380 NKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS-MIR-KDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEAS 457 (896)
T ss_pred chhccCCCCChhHHHHHHHHhCCCEEECCCCCC-cce-ecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 1222333222222222222111111111000 000 1111234555667777776655 45788999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC-------------------------
Q 007829 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD------------------------- 462 (588)
Q Consensus 408 ~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~------------------------- 462 (588)
+.++.+|...|+++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 458 E~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~ 535 (896)
T PRK13104 458 EFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKK 535 (896)
T ss_pred HHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999994 9999999999999862
Q ss_pred -------------cceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCC
Q 007829 463 -------------IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 463 -------------v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~ 503 (588)
==|||--..+.|-.---|-.||+||.|.+|.+-.|++-+++
T Consensus 536 ~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 536 EWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12677777888888889999999999999999999987743
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3.7e-29 Score=280.17 Aligned_cols=310 Identities=21% Similarity=0.241 Sum_probs=209.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...|+|+|..+......+.-+|+.||||+|||.++++++...+.. +....++|.+||+++++|+++++.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~---------~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ---------GLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 348999999886554456678999999999999988776643322 24568999999999999999999887
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHH---------------------HHHh---c---CCcEEEeChHHHHHHHHc-cc
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQL---------------------EVVK---R---GVHIVVATPGRLKDMLAK-KK 294 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~---------------------~~l~---~---~~~IvV~Tp~~l~~~l~~-~~ 294 (588)
...+ ++...+.+.+|........ ..+. + -.+|+|||+.+++..+.. +.
T Consensus 355 ~~~~----f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh 430 (878)
T PRK09694 355 ASKL----FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH 430 (878)
T ss_pred HHHh----cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch
Confidence 6544 2234567777754322110 1111 1 168999999998765554 22
Q ss_pred CCCCCc----ceeeecCCcccccCCCHHHHHHHHHhhh-hcceEEEEeeccchHHHHHHHHhccC----------CeEEE
Q 007829 295 MNLDNC----RYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVK----------PVTVN 359 (588)
Q Consensus 295 ~~l~~~----~~lIvDEah~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~----------p~~i~ 359 (588)
..++.+ ++|||||+|.+-.. ....+..+++.+. ....+|+||||+|....+.+...+.. |....
T Consensus 431 ~~lR~~~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~ 509 (878)
T PRK09694 431 RFIRGFGLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITW 509 (878)
T ss_pred HHHHHHhhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccc
Confidence 223333 48999999997432 2234445555442 34569999999999876544332211 11000
Q ss_pred ecCCCCc-----------ccceEEEeeeh------hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC---C
Q 007829 360 VGRAGAA-----------NLDVIQEVEYV------KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG---V 419 (588)
Q Consensus 360 ~~~~~~~-----------~~~v~~~~~~~------~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g---~ 419 (588)
....... .......+... .....+..+++.+ ..++++||||||+..+..+++.|+..+ .
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~ 588 (878)
T PRK09694 510 RGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQV 588 (878)
T ss_pred cccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCc
Confidence 0000000 00011111111 1122223333333 356789999999999999999998765 6
Q ss_pred cEEEEeCCCCHHHH----HHHHHHH-hcCC---cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCC
Q 007829 420 EAVAVHGGKDQEER----EYAISSF-KAGK---KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 420 ~~~~ihg~~~~~~r----~~~~~~F-~~g~---~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~ 490 (588)
++..+||.+++.+| .++++.| ++|+ ..|||||+++++|+|+ +++++|....| ++.|+||+||+||.+.
T Consensus 589 ~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 589 DIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 79999999999999 4567788 6666 4799999999999999 68999998888 7899999999999875
No 86
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.2e-30 Score=279.95 Aligned_cols=384 Identities=20% Similarity=0.207 Sum_probs=264.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007829 149 RFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 149 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
.+|.+-..++. |...+.++|....+.++.+ .|+++|||||+|||.++++-+++.+-......-...-...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46666666665 4566999999999999965 69999999999999999999998876543211111123458999999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC---CCCCcceee
Q 007829 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM---NLDNCRYLT 304 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~---~l~~~~~lI 304 (588)
.++|++.+...|.+.+.++ +++|.-.+|+.....+. ..+..|+|+||+.+ |.+.++.- ..+-++++|
T Consensus 373 mKaLvqE~VgsfSkRla~~------GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlI 442 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL------GITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLI 442 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc------CcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHh
Confidence 9999999999999988877 99999999986543221 13479999999999 88877632 234578999
Q ss_pred ecCCcccccCCCHHHHHHHHHhhh-------hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeeh
Q 007829 305 LDEADRLVDLGFEDDIREVFDHFK-------AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 305 vDEah~l~~~~~~~~i~~i~~~~~-------~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~ 377 (588)
+||.|.+.|. .++.+..|..... ..++++++|||+|+-. +.+.-...++.-+...........+.|.+.-+
T Consensus 443 IDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi 520 (1674)
T KOG0951|consen 443 IDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGI 520 (1674)
T ss_pred hhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEecc
Confidence 9999998664 4466666655442 3568999999999863 22222223332222222233444455554433
Q ss_pred hhH-----------HHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-----------------------------
Q 007829 378 KQE-----------AKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK----------------------------- 417 (588)
Q Consensus 378 ~~~-----------~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~----------------------------- 417 (588)
... .-...+++... .++||||+.++++.-..++.++..
T Consensus 521 ~ek~~~~~~qamNe~~yeKVm~~ag--k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~k 598 (1674)
T KOG0951|consen 521 TEKKPLKRFQAMNEACYEKVLEHAG--KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAK 598 (1674)
T ss_pred ccCCchHHHHHHHHHHHHHHHHhCC--CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhccc
Confidence 221 12223333333 379999999999988888877621
Q ss_pred --------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----ecCC------CCChhHHH
Q 007829 418 --------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----NYDM------PAEIENYV 479 (588)
Q Consensus 418 --------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI----~~~~------p~s~~~y~ 479 (588)
.+.++++|+||+..+|..+.+.|++|.++|||+|-.+++|+|+|+-.++| .||+ +.++.+.+
T Consensus 599 n~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~ 678 (1674)
T KOG0951|consen 599 NPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVM 678 (1674)
T ss_pred ChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHH
Confidence 34578899999999999999999999999999999999999999888777 4554 34799999
Q ss_pred HHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCch---HHhhccCchhhHHHHhhccCCCCCcccCCCCcc
Q 007829 480 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPP---VLAELNDPMEDVDAITNASGVKGCAYCGGLGHR 556 (588)
Q Consensus 480 QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~---~l~~l~~~~~~~~~~~~~~~~~~c~~cg~~g~~ 556 (588)
||.|||||.+..+..-.++..+. .++...+...+|.+|- ++..+.+..... .-.|-...-..|.|+||.
T Consensus 679 qmlgragrp~~D~~gegiiit~~-----se~qyyls~mn~qLpiesq~~~rl~d~lnae---iv~Gv~~~~d~~~wl~yT 750 (1674)
T KOG0951|consen 679 QMLGRAGRPQYDTCGEGIIITDH-----SELQYYLSLMNQQLPIESQFVSRLADCLNAE---IVLGVRSARDAVDWLGYT 750 (1674)
T ss_pred HHHhhcCCCccCcCCceeeccCc-----hHhhhhHHhhhhcCCChHHHHHHhhhhhhhh---hhcchhhHHHHHhhhcce
Confidence 99999999875543333333221 2566667777777764 344444432111 111111233456777763
No 87
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5.5e-29 Score=275.91 Aligned_cols=363 Identities=22% Similarity=0.240 Sum_probs=279.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVL----SG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il----~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
.+......+...-...-||-|..||..+. ++ .|-++||..|-|||.+++-+++..++ +|++|.
T Consensus 579 ~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-----------~GKQVA 647 (1139)
T COG1197 579 PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-----------DGKQVA 647 (1139)
T ss_pred CChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-----------CCCeEE
Confidence 33455556665533457999999999987 34 48899999999999999999988774 489999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcccCCCCC
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~l~~~l~~~~~~l~~ 299 (588)
|+|||--||+|.++.|+.-+..+ .+++..+..-.+.+++...+ .. .+||||+| +-|.++.+.+.+
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~f------PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~Fkd 716 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGF------PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKD 716 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCC------CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEec
Confidence 99999999999999999988766 78888888766666665444 33 58999999 677788889999
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
+.+|||||=|+ |+-.-+.-++.++.+..++-+|||+-|...+++-..+.+--.+... +.....+...+.-.+.
T Consensus 717 LGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP--P~~R~pV~T~V~~~d~ 789 (1139)
T COG1197 717 LGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP--PEDRLPVKTFVSEYDD 789 (1139)
T ss_pred CCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCC--CCCCcceEEEEecCCh
Confidence 99999999999 7777788888899999999999999888888877776665444432 2334445444443333
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccC
Q 007829 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 457 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~G 457 (588)
.---..++..+ ..++++-..+|.++..+.+++.|+.. ...+++.||.|+..+-+.++..|.+|+.+|||||.+.+.|
T Consensus 790 ~~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtG 868 (1139)
T COG1197 790 LLIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETG 868 (1139)
T ss_pred HHHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecC
Confidence 33233333333 35678999999999999999999876 5678899999999999999999999999999999999999
Q ss_pred CCCCCcceEEecCCCC-ChhHHHHHhcccCCCCCccEEEEEEcCCC--ChhHHHHHHHHHHHhcCcCchHHhhccCchhh
Q 007829 458 LDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQ--SETTLLDLKHLLQEAKQRIPPVLAELNDPMED 534 (588)
Q Consensus 458 lDip~v~~VI~~~~p~-s~~~y~QriGRagR~g~~g~~~~~~~~~~--~~~~~~~l~~~l~~~~~~vp~~l~~l~~~~~~ 534 (588)
||+|+++++|..+... ..++..|..||+||.++.+.|+.++.+.. .+.....|..+-. +.+|-.++.-
T Consensus 869 IDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~---------~~~LGaGf~l 939 (1139)
T COG1197 869 IDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS---------FTELGAGFKL 939 (1139)
T ss_pred cCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh---------hhhcCchHHH
Confidence 9999999999776654 69999999999999999999999998753 2222222222211 2233333221
Q ss_pred ---HHHHhhccCCCCCcccC
Q 007829 535 ---VDAITNASGVKGCAYCG 551 (588)
Q Consensus 535 ---~~~~~~~~~~~~c~~cg 551 (588)
...+++.|..-|-.+.|
T Consensus 940 A~~DLeIRGaGNlLG~eQSG 959 (1139)
T COG1197 940 AMHDLEIRGAGNLLGEEQSG 959 (1139)
T ss_pred HhcchhccccccccCccccC
Confidence 13566777777777766
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.2e-29 Score=278.10 Aligned_cols=315 Identities=21% Similarity=0.263 Sum_probs=237.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+.-.+..|+ |+.+.||+|||+++.+|++...+. |..+-|++||..||.|.++.+..++
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-----------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 368999998888777775 999999999999999999755443 4457899999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHccc------CCCCCcceeeecCCcccc-cCC
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKK------MNLDNCRYLTLDEADRLV-DLG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~------~~l~~~~~lIvDEah~l~-~~~ 315 (588)
..+ ++++.+++|+.+..++...+ .++|+++||++| .|+|..+. ..++.+.++||||||.|+ |..
T Consensus 147 ~~L------Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 147 EFL------GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred hhc------CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 877 99999999998888776654 389999999999 88987654 347789999999999976 100
Q ss_pred ---------------CHHHHHHHHHhhhh---------------------------------------------------
Q 007829 316 ---------------FEDDIREVFDHFKA--------------------------------------------------- 329 (588)
Q Consensus 316 ---------------~~~~i~~i~~~~~~--------------------------------------------------- 329 (588)
....+..+...+..
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 11111111111100
Q ss_pred ------------------------------------------------------------------cceEEEEeeccchH
Q 007829 330 ------------------------------------------------------------------QRQTLLFSATMPTK 343 (588)
Q Consensus 330 ------------------------------------------------------------------~~q~l~~SAT~~~~ 343 (588)
...+.+||+|....
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 01244566666555
Q ss_pred HHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCCc
Q 007829 344 IQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGVE 420 (588)
Q Consensus 344 i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~~ 420 (588)
..+|...+-...+.+....+ ....+ .....+.....|+..+...+. ..+.|+||||+|+..++.++..|...|++
T Consensus 379 ~~E~~~iY~l~vv~IPtnkp-~~r~d-~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 379 AEEFREIYNLDVVVIPTNRP-MIRID-HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred HHHHHHHhCCCEEEcCCCCC-eeeee-CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 44444444333222221111 11111 112334456667777776664 36789999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc-------------------------------------
Q 007829 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDI------------------------------------- 463 (588)
Q Consensus 421 ~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v------------------------------------- 463 (588)
+..+||. +.+|+..+..|+.+...|+|||++++||+||+=-
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 8899999999999999999999999999999642
Q ss_pred -ceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCC
Q 007829 464 -QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 464 -~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~ 503 (588)
=|||--..|.|..---|-.||+||.|.+|.+-.|++-+++
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2688888899999999999999999999999999988743
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=9.7e-30 Score=291.11 Aligned_cols=297 Identities=22% Similarity=0.290 Sum_probs=207.3
Q ss_pred HHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCC
Q 007829 172 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251 (588)
Q Consensus 172 ~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~ 251 (588)
+.+..+.+++.+|++|+||||||. ++|.+.. ... .+....+++.-|.|-.|..+...+.+..
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~ll--e~~------~~~~~~I~~tQPRRlAA~svA~RvA~el-------- 135 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICL--ELG------RGSHGLIGHTQPRRLAARTVAQRIAEEL-------- 135 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHH--HcC------CCCCceEecCCccHHHHHHHHHHHHHHh--------
Confidence 444555567788899999999996 5676543 211 0122355667799988888777766654
Q ss_pred CCceEEEEEcC-cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCc-ccccCCCHHH-HHHHHHhhh
Q 007829 252 PDLRTLLCIGG-VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD-RLVDLGFEDD-IREVFDHFK 328 (588)
Q Consensus 252 ~~i~~~~~~gg-~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah-~l~~~~~~~~-i~~i~~~~~ 328 (588)
+..++...|. .....+ .....+|.|+|+|.|+..+.... .++.+++||||||| ++++.+|... ++.++.. .
T Consensus 136 -g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-r 209 (1283)
T TIGR01967 136 -GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-R 209 (1283)
T ss_pred -CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-C
Confidence 2333333332 111111 12357899999999999887654 48999999999999 6888877654 4555443 3
Q ss_pred hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh------hHHHHHHHH----HHhhcCCCCEE
Q 007829 329 AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK------QEAKIVYLL----ECLQKTPPPVL 398 (588)
Q Consensus 329 ~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~------~~~k~~~ll----~~l~~~~~~vi 398 (588)
++.|+|+||||++. ..+.+.+...|+ +.+.... ..+...+.... ..+....++ ..+....+.+|
T Consensus 210 pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdIL 283 (1283)
T TIGR01967 210 PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDIL 283 (1283)
T ss_pred CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEE
Confidence 57799999999975 356666555554 3332211 11222221111 012222222 22334567899
Q ss_pred EEeCccccHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCC--
Q 007829 399 IFCENKADVDDIHEYLLLKG---VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA-- 473 (588)
Q Consensus 399 IF~~s~~~~~~l~~~L~~~g---~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~-- 473 (588)
||+++..+++.+++.|...+ +.+..+||++++++|..+++.+ +..+|||||+++++|||+|+|++||++++++
T Consensus 284 VFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~ 361 (1283)
T TIGR01967 284 IFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARIS 361 (1283)
T ss_pred EeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccc
Confidence 99999999999999998764 4578899999999999986543 3468999999999999999999999999543
Q ss_pred ----------------ChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 474 ----------------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 474 ----------------s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|.++|.||.|||||.| +|.|+.++++.
T Consensus 362 ~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 362 RYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred ccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 5679999999999997 99999999865
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.9e-29 Score=266.45 Aligned_cols=290 Identities=23% Similarity=0.286 Sum_probs=203.4
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~----g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
..|+++|.+++..+.+ ++..++++|||+|||++++..+... +..+||||||++|+.||.+.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------~~~~Lvlv~~~~L~~Qw~~~~ 100 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------KRSTLVLVPTKELLDQWAEAL 100 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------cCCEEEEECcHHHHHHHHHHH
Confidence 4699999999999997 8999999999999998876665432 223999999999999999877
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHH
Q 007829 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~ 319 (588)
..++.. ...+..+.|+..... . ..|.|+|.+.+........+..+.+.+|||||||++....
T Consensus 101 ~~~~~~-------~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---- 162 (442)
T COG1061 101 KKFLLL-------NDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS---- 162 (442)
T ss_pred HHhcCC-------ccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----
Confidence 777531 112333444322111 1 3699999988755421123334478999999999987643
Q ss_pred HHHHHHhhhhcceEEEEeeccchHHHH---HHHHhccCCeEEEecCCC-----CcccceEEEeee---------------
Q 007829 320 IREVFDHFKAQRQTLLFSATMPTKIQN---FARSALVKPVTVNVGRAG-----AANLDVIQEVEY--------------- 376 (588)
Q Consensus 320 i~~i~~~~~~~~q~l~~SAT~~~~i~~---~~~~~l~~p~~i~~~~~~-----~~~~~v~~~~~~--------------- 376 (588)
.+.+...+.....++++|||++..-.. .+...+ .|+........ .........+..
T Consensus 163 ~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 163 YRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred HHHHHHhhhcccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhh
Confidence 344555544443389999998743211 111111 12222221110 000000000000
Q ss_pred ----------------------hhhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHH
Q 007829 377 ----------------------VKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEE 432 (588)
Q Consensus 377 ----------------------~~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~ 432 (588)
.....++..+...+.. .+.+++|||.+..++..++..|...|+ +..+.|..+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~e 320 (442)
T COG1061 242 RFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEE 320 (442)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHH
Confidence 0011122222222322 356999999999999999999998888 889999999999
Q ss_pred HHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCC
Q 007829 433 REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 487 (588)
Q Consensus 433 r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR 487 (588)
|..+++.|+.|.+++||++.++.+|+|+|+++++|......|...|+||+||.-|
T Consensus 321 R~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 321 REAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999
No 91
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.9e-29 Score=272.77 Aligned_cols=148 Identities=24% Similarity=0.331 Sum_probs=129.7
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007829 146 KDMRFPEPILKKLK-----AKGIVQP---TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 146 ~~~~l~~~l~~~l~-----~~g~~~p---~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
+.+.+.+.+.+.+. .+||..| +|+|.++++.++.++++|+.|+||+|||++|++|++..++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 45678888888777 5689998 99999999999999999999999999999999999987754
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcccCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKKMN 296 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~~~ 296 (588)
+..++||+||++||.|+.+.+..+...+ ++++.+++||.+...+...+ +++|+|+||++| .|++..+.+.
T Consensus 135 -g~~v~IVTpTrELA~Qdae~m~~L~k~l------GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~ 205 (970)
T PRK12899 135 -GKPVHLVTVNDYLAQRDCEWVGSVLRWL------GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIA 205 (970)
T ss_pred -cCCeEEEeCCHHHHHHHHHHHHHHHhhc------CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCC
Confidence 2238999999999999999999998765 89999999999998887655 589999999999 9999987666
Q ss_pred CC-------CcceeeecCCcccc
Q 007829 297 LD-------NCRYLTLDEADRLV 312 (588)
Q Consensus 297 l~-------~~~~lIvDEah~l~ 312 (588)
++ .+.++||||||.|+
T Consensus 206 ~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 206 TRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred cCHHHhhcccccEEEEechhhhh
Confidence 55 45899999999986
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.7e-29 Score=266.34 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=195.7
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007829 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 i~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
++.|+||||||.+|+..+... +. .|.++|||+|+++|+.|+++.+++.+ +.++..++|+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~----------~g~~vLvlvP~i~L~~Q~~~~l~~~f---------~~~v~vlhs~~ 60 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LA----------LGKSVLVLVPEIALTPQMIQRFKYRF---------GSQVAVLHSGL 60 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HH----------cCCeEEEEeCcHHHHHHHHHHHHHHh---------CCcEEEEECCC
Confidence 467999999999997655433 33 46789999999999999999998865 45678889887
Q ss_pred chHHHHH---HHh-cCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCC---HHHHH--HHHHhhhhcceEE
Q 007829 264 DMRSQLE---VVK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF---EDDIR--EVFDHFKAQRQTL 334 (588)
Q Consensus 264 ~~~~~~~---~l~-~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~---~~~i~--~i~~~~~~~~q~l 334 (588)
+..+... .+. ..++|||+|+..+. ..+.++++|||||+|....++. .-..+ .++.......++|
T Consensus 61 ~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vi 133 (505)
T TIGR00595 61 SDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVV 133 (505)
T ss_pred CHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEE
Confidence 7655433 333 34799999997662 3578899999999999764431 11111 2223334567899
Q ss_pred EEeeccchHHHHHHHHhccCCeEEEec-CCCCcccceEEEeeehhh------HHHHHHHHHHhhcCCCCEEEEeCcccc-
Q 007829 335 LFSATMPTKIQNFARSALVKPVTVNVG-RAGAANLDVIQEVEYVKQ------EAKIVYLLECLQKTPPPVLIFCENKAD- 406 (588)
Q Consensus 335 ~~SAT~~~~i~~~~~~~l~~p~~i~~~-~~~~~~~~v~~~~~~~~~------~~k~~~ll~~l~~~~~~viIF~~s~~~- 406 (588)
++|||++.+....+... ....+... +...........+..... ...+...+....+.+.++|||+|++..
T Consensus 134 l~SATPsles~~~~~~g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya 211 (505)
T TIGR00595 134 LGSATPSLESYHNAKQK--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYS 211 (505)
T ss_pred EEeCCCCHHHHHHHhcC--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCC
Confidence 99999876654444321 11111111 111111111111111110 112222222233456789999877532
Q ss_pred -----------------------------------------------------------HHHHHHHHHHc--CCcEEEEe
Q 007829 407 -----------------------------------------------------------VDDIHEYLLLK--GVEAVAVH 425 (588)
Q Consensus 407 -----------------------------------------------------------~~~l~~~L~~~--g~~~~~ih 425 (588)
.+.+.+.|... +.++..+|
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d 291 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARID 291 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEe
Confidence 57888888876 78999999
Q ss_pred CCCCHHHH--HHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE--ecCC----CC------ChhHHHHHhcccCCCCCc
Q 007829 426 GGKDQEER--EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI--NYDM----PA------EIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 426 g~~~~~~r--~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI--~~~~----p~------s~~~y~QriGRagR~g~~ 491 (588)
+++++..+ ..+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||+||.+..
T Consensus 292 ~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~ 371 (505)
T TIGR00595 292 SDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP 371 (505)
T ss_pred cccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC
Confidence 99987665 8999999999999999999999999999999985 5554 21 246789999999999999
Q ss_pred cEEEEEEc
Q 007829 492 GIATTFIN 499 (588)
Q Consensus 492 g~~~~~~~ 499 (588)
|.+++...
T Consensus 372 g~viiqt~ 379 (505)
T TIGR00595 372 GQVIIQTY 379 (505)
T ss_pred CEEEEEeC
Confidence 98885543
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.8e-29 Score=271.73 Aligned_cols=314 Identities=19% Similarity=0.256 Sum_probs=230.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+.-.+..|+ |..+.||+|||+++.+|++..++. |..|-|++||.-||.|-++.+..++
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 478999999888777877 999999999999999999887754 7789999999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcc------cCCCCCcceeeecCCcccc-cCC
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK-DMLAKK------KMNLDNCRYLTLDEADRLV-DLG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~-~~l~~~------~~~l~~~~~lIvDEah~l~-~~~ 315 (588)
..+ ++++.++.|+.+..+..... .++|+++|...|- |.|..+ ......+.+.||||+|.++ |.+
T Consensus 146 ~~L------Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWL------GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred Hhc------CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 988 99999999887766554433 4799999988762 444332 2234678899999999875 110
Q ss_pred ---------------CHHHHHHHHHhhhhc--------------------------------------------------
Q 007829 316 ---------------FEDDIREVFDHFKAQ-------------------------------------------------- 330 (588)
Q Consensus 316 ---------------~~~~i~~i~~~~~~~-------------------------------------------------- 330 (588)
....+..+...+...
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 011111111111100
Q ss_pred ------------------------------------------------------------------------------ce
Q 007829 331 ------------------------------------------------------------------------------RQ 332 (588)
Q Consensus 331 ------------------------------------------------------------------------------~q 332 (588)
.+
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 12
Q ss_pred EEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHH
Q 007829 333 TLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDD 409 (588)
Q Consensus 333 ~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~ 409 (588)
+.+||+|......+|.+.+-...+.+.... +.. ..-.....+.....|+..+.+.+. ..+.|+||||+|+..++.
T Consensus 378 l~GmTGTa~~e~~Ef~~iY~l~vv~IPtnk-p~~-r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 378 LSGMTGTAKTEEEEFREIYNMEVITIPTNR-PVI-RKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSER 455 (796)
T ss_pred hhccCCCCHHHHHHHHHHhCCCEEEcCCCC-Cee-eeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 234444444333333332222211111100 000 011112234455667777776663 467899999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC---Ccc-----eEEecCCCCChhHHHHH
Q 007829 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP---DIQ-----HVINYDMPAEIENYVHR 481 (588)
Q Consensus 410 l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip---~v~-----~VI~~~~p~s~~~y~Qr 481 (588)
+++.|...|+++..+|+++.+.++..+...++.|. |+|||++++||+||+ +|. |||++++|.|...|.|+
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999999999998888887777777776 999999999999995 899 99999999999999999
Q ss_pred hcccCCCCCccEEEEEEcCCC
Q 007829 482 IGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 482 iGRagR~g~~g~~~~~~~~~~ 502 (588)
+|||||.|.+|.+..|++.++
T Consensus 534 ~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 534 RGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hhhhccCCCCcceEEEEeccc
Confidence 999999999999999999874
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5e-29 Score=265.83 Aligned_cols=308 Identities=20% Similarity=0.263 Sum_probs=235.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|..+|++||-.+..|..+++.|+|.+|||+++-.++...- ..+.+++|-+|-++|.+|-++.|+..+.
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-----------~h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-----------KHMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-----------hhccceEecchhhhhccchHHHHHHhcc
Confidence 68999999999999999999999999999999888776432 2477899999999999999999998754
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHH
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~ 324 (588)
.+.+++|+...... +.++|+|.+.|..||.++.--++++.+|||||+|.+.|...+..|..++
T Consensus 366 ----------DvgLlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 366 ----------DVGLLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred ----------ccceeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeee
Confidence 23488888766544 7899999999999999988889999999999999999988889999999
Q ss_pred HhhhhcceEEEEeeccchHHH--HHHHHhccCCeEEEec-CCCC------------------------------------
Q 007829 325 DHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVG-RAGA------------------------------------ 365 (588)
Q Consensus 325 ~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~-~~~~------------------------------------ 365 (588)
-.+|...++|++|||.|+..+ +++...-.+.+.+... ....
T Consensus 429 IMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~ 508 (1248)
T KOG0947|consen 429 IMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKK 508 (1248)
T ss_pred eeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcc
Confidence 999999999999999997643 2222222222221110 0000
Q ss_pred ------------------cccceEEEe-------eehhhH----HHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHH
Q 007829 366 ------------------ANLDVIQEV-------EYVKQE----AKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 366 ------------------~~~~v~~~~-------~~~~~~----~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~ 415 (588)
......+.. ...... ..+..++..+.+. --|+||||-+++.|+..+++|.
T Consensus 509 ~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~ 588 (1248)
T KOG0947|consen 509 EAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLT 588 (1248)
T ss_pred cccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHh
Confidence 000000000 000001 1255666666654 4599999999999999999985
Q ss_pred HcC---------------------------------------CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007829 416 LKG---------------------------------------VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 416 ~~g---------------------------------------~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 456 (588)
... -.++++|||+-+--++-+.-.|..|-++||+||.++++
T Consensus 589 ~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAM 668 (1248)
T KOG0947|consen 589 NLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAM 668 (1248)
T ss_pred ccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhh
Confidence 421 12567899999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCC---------CChhHHHHHhcccCCCCC--ccEEEEEEcCC
Q 007829 457 GLDFPDIQHVINYDMP---------AEIENYVHRIGRTGRCGK--TGIATTFINKN 501 (588)
Q Consensus 457 GlDip~v~~VI~~~~p---------~s~~~y~QriGRagR~g~--~g~~~~~~~~~ 501 (588)
|+|.|+-.+|+. .+- -.+..|.|++|||||.|- +|+++++....
T Consensus 669 GVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 669 GVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999998766662 222 368899999999999984 56666666554
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=8.3e-29 Score=258.20 Aligned_cols=316 Identities=21% Similarity=0.245 Sum_probs=239.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
-.+.|+|.++|..+-++..+++.|.|.+|||.++-.++.+.+. +..+++|-.|-++|.+|-++++..-+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-----------~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-----------EKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-----------hcCeEEeeChhhhhcchhHHHHHHHh
Confidence 3678999999999999999999999999999999998887764 36789999999999999999988765
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHH
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i 323 (588)
+ .+++.+|+..+... +..+|+|.+.|..||.++..-++.+..|||||+|.|-|...+-.|..-
T Consensus 197 ~----------DVGLMTGDVTInP~-------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEET 259 (1041)
T KOG0948|consen 197 K----------DVGLMTGDVTINPD-------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET 259 (1041)
T ss_pred c----------ccceeecceeeCCC-------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeee
Confidence 3 36677887666543 679999999999999999888999999999999999998877888888
Q ss_pred HHhhhhcceEEEEeeccchHHH--HHHHHhccCCeEEEec-CCCCccc--------ceEEEeeeh---hhHHH-------
Q 007829 324 FDHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVG-RAGAANL--------DVIQEVEYV---KQEAK------- 382 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~-~~~~~~~--------~v~~~~~~~---~~~~k------- 382 (588)
+-.++...+.+++|||+|+..+ +++...-..|+.+... ....... +-.+.+.-. ..++.
T Consensus 260 IIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 260 IILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred EEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 8888999999999999998753 3444444455443221 1110000 000000000 01111
Q ss_pred -------------------------------HHHHHHH-hhcCCCCEEEEeCccccHHHHHHHHHHcCC-----------
Q 007829 383 -------------------------------IVYLLEC-LQKTPPPVLIFCENKADVDDIHEYLLLKGV----------- 419 (588)
Q Consensus 383 -------------------------------~~~ll~~-l~~~~~~viIF~~s~~~~~~l~~~L~~~g~----------- 419 (588)
+..++.. +.+...|+|||+-++++|+.++-.+....+
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~ 419 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVET 419 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHH
Confidence 2222222 233456899999999999999988754321
Q ss_pred ----------------------------cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe---
Q 007829 420 ----------------------------EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN--- 468 (588)
Q Consensus 420 ----------------------------~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~--- 468 (588)
.++++|||+-+--++-+.-.|.+|-+++|+||.+++.|+|.|+-.+|+.
T Consensus 420 iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~r 499 (1041)
T KOG0948|consen 420 IFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVR 499 (1041)
T ss_pred HHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeecc
Confidence 2567899999999999999999999999999999999999998887772
Q ss_pred -cCCC----CChhHHHHHhcccCCCCC--ccEEEEEEcCCCChhHH
Q 007829 469 -YDMP----AEIENYVHRIGRTGRCGK--TGIATTFINKNQSETTL 507 (588)
Q Consensus 469 -~~~p----~s~~~y~QriGRagR~g~--~g~~~~~~~~~~~~~~~ 507 (588)
||-- -|-..|+|+.|||||.|. .|.+++.+++.-+....
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~a 545 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVA 545 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHH
Confidence 2211 267789999999999985 58888888776444433
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=4.2e-27 Score=265.96 Aligned_cols=315 Identities=21% Similarity=0.274 Sum_probs=216.6
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.++++|.+++..+. +|.+.|+...+|.|||+..+.. +..+.... +....+|||||. ++..||.+.+.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~-------~~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR-------GITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc-------CCCCCEEEEeCh-HHHHHHHHHHH
Confidence 68999999999875 6789999999999999875433 33333211 223457999997 56678899999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHH--H-hcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCH
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV--V-KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~--l-~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~ 317 (588)
+|+ |.+++..++|.......... + ....+|+|+|++.+..... .+.-..+++|||||||++.+..
T Consensus 240 kw~--------p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~-- 307 (1033)
T PLN03142 240 RFC--------PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN-- 307 (1033)
T ss_pred HHC--------CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--
Confidence 986 36778888876543332211 1 2357999999988754322 2233457899999999998743
Q ss_pred HHHHHHHHhhhhcceEEEEeeccch-HHHHH----------------------------------------HHHh-----
Q 007829 318 DDIREVFDHFKAQRQTLLFSATMPT-KIQNF----------------------------------------ARSA----- 351 (588)
Q Consensus 318 ~~i~~i~~~~~~~~q~l~~SAT~~~-~i~~~----------------------------------------~~~~----- 351 (588)
......+..+... ..+++|+||-. .+.++ ++.+
T Consensus 308 Sklskalr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 308 SLLSKTMRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HHHHHHHHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhh
Confidence 4555666666544 35889999721 11100 0000
Q ss_pred -------ccCC--eEEEecCCC--------------------Cc---ccceEE-----------------------Eeee
Q 007829 352 -------LVKP--VTVNVGRAG--------------------AA---NLDVIQ-----------------------EVEY 376 (588)
Q Consensus 352 -------l~~p--~~i~~~~~~--------------------~~---~~~v~~-----------------------~~~~ 376 (588)
+... ..+.+.... .. ..++.. .-..
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~l 466 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHL 466 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHH
Confidence 0000 001110000 00 000000 0000
Q ss_pred hhhHHH---HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC---CcEEEEE
Q 007829 377 VKQEAK---IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG---KKDVLVA 450 (588)
Q Consensus 377 ~~~~~k---~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g---~~~VLVa 450 (588)
+....| +..++..+...+.+||||+......+.|.++|...|+.+..+||+++..+|..+++.|++. ...+|++
T Consensus 467 ie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 467 VENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 111223 3344555566788999999999999999999999999999999999999999999999853 3467999
Q ss_pred cCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEE--EEEEcCC
Q 007829 451 TDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~--~~~~~~~ 501 (588)
|.+++.|||+..+++||+||+|||+..+.|++||+.|.|++..+ +.|++.+
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999998654 4555555
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.1e-27 Score=260.40 Aligned_cols=316 Identities=19% Similarity=0.252 Sum_probs=238.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007829 159 KAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 159 ~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
...+| .|.++|++++-.+..|.+++++||||||||++...++...+. .|.+++|.+|.++|.+|.++.
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-----------~~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-----------DGQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-----------cCCceEeccchhhhhhhHHHH
Confidence 34466 699999999999999999999999999999999888776653 466799999999999999999
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHH
Q 007829 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~ 318 (588)
+...+... .-.+++++|+..... ++.++|+|.+.|.+|+.++...+..+..|||||+|.|.|...+.
T Consensus 182 l~~~fgdv------~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~ 248 (1041)
T COG4581 182 LLAKFGDV------ADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGV 248 (1041)
T ss_pred HHHHhhhh------hhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccch
Confidence 98776422 223577888766553 48899999999999999998889999999999999999998889
Q ss_pred HHHHHHHhhhhcceEEEEeeccchHHH--HHHHHhccCCeEEEecCCCCcccceEEEee-------ehhh----------
Q 007829 319 DIREVFDHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVGRAGAANLDVIQEVE-------YVKQ---------- 379 (588)
Q Consensus 319 ~i~~i~~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~-------~~~~---------- 379 (588)
.|+.++-.++...++++||||.|+..+ .++...-..|+.+.....-... ..+.+. .+++
T Consensus 249 VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvP--L~~~~~~~~~l~~lvde~~~~~~~~~~ 326 (1041)
T COG4581 249 VWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVP--LEHFVYVGKGLFDLVDEKKKFNAENFP 326 (1041)
T ss_pred hHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCC--eEEEEecCCceeeeecccccchhhcch
Confidence 999999999999999999999987642 3444333445444332111110 000000 0000
Q ss_pred -------------------------------------HHHHHHHHHHhh-cCCCCEEEEeCccccHHHHHHHHHHc----
Q 007829 380 -------------------------------------EAKIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLK---- 417 (588)
Q Consensus 380 -------------------------------------~~k~~~ll~~l~-~~~~~viIF~~s~~~~~~l~~~L~~~---- 417 (588)
..+...++..+. ...-|+|+|+-++..|+..+..+...
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~ 406 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVL 406 (1041)
T ss_pred hhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccccccc
Confidence 000111233332 23458999999999999888877421
Q ss_pred ------------------------CCc-------------EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC
Q 007829 418 ------------------------GVE-------------AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF 460 (588)
Q Consensus 418 ------------------------g~~-------------~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDi 460 (588)
+++ .+++|+||-+..|..+...|..|-++|++||.+++.|+|.
T Consensus 407 ~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 407 TEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM 486 (1041)
T ss_pred CCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC
Confidence 121 3468999999999999999999999999999999999999
Q ss_pred CCcceEE----ecC----CCCChhHHHHHhcccCCCCCc--cEEEEEEcCC
Q 007829 461 PDIQHVI----NYD----MPAEIENYVHRIGRTGRCGKT--GIATTFINKN 501 (588)
Q Consensus 461 p~v~~VI----~~~----~p~s~~~y~QriGRagR~g~~--g~~~~~~~~~ 501 (588)
|.-++|+ .+| .+-++..|+|+.|||||.|.. |.+++...+.
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred cccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 9877666 222 234799999999999999864 6666664443
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=4.7e-27 Score=257.09 Aligned_cols=314 Identities=19% Similarity=0.246 Sum_probs=227.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+++|.-+--.+..|+ |+.++||.|||++|.+|++..++. |..|.||+|+..||.|..+.+..+..
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~-----------g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 67888887776666665 999999999999999999877654 45599999999999999999999998
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc-cCC-----CCCcceeeecCCcccccC-C-
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK-KMN-----LDNCRYLTLDEADRLVDL-G- 315 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~-~~~-----l~~~~~lIvDEah~l~~~-~- 315 (588)
.+ ++++.++.++.+..+... .-+++|+++||++| .|+|..+ .+. ...+.++||||+|.++-. .
T Consensus 149 ~l------Glsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 149 FL------GLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred hc------CCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 77 999999999877643322 12689999999999 8888766 333 377899999999987621 0
Q ss_pred --------------CHHHHHHHHHhhhh-------------------cc-------------------------------
Q 007829 316 --------------FEDDIREVFDHFKA-------------------QR------------------------------- 331 (588)
Q Consensus 316 --------------~~~~i~~i~~~~~~-------------------~~------------------------------- 331 (588)
....+..+...+.. ..
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 01111111111110 00
Q ss_pred --------------------------------------------------------------------------------
Q 007829 332 -------------------------------------------------------------------------------- 331 (588)
Q Consensus 332 -------------------------------------------------------------------------------- 331 (588)
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence
Q ss_pred -----eEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCc
Q 007829 332 -----QTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCEN 403 (588)
Q Consensus 332 -----q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s 403 (588)
.+.+||+|......+|...+-...+.|....+ ....+ .....|.....|+..+++.+ .+.+.|+||||.|
T Consensus 381 Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp-~~R~d-~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRP-MVRKD-MADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCC-cccee-CCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 11223333322222222222211111111110 01111 11123444566766666554 3578899999999
Q ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC---------------------
Q 007829 404 KADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD--------------------- 462 (588)
Q Consensus 404 ~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~--------------------- 462 (588)
+..++.++.+|...|+.+..+|+.+++.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999998 9999999999999962
Q ss_pred ----------------cceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCC
Q 007829 463 ----------------IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 463 ----------------v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~ 503 (588)
==|||--..+.|-.---|-.||+||.|.+|.+..|++-+++
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12688888888988899999999999999999999987743
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=5.2e-26 Score=261.93 Aligned_cols=304 Identities=19% Similarity=0.231 Sum_probs=198.5
Q ss_pred CCcHHHHHHHHHHh----c-CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVL----S-GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~-g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.++++|.+||..+. . .++++++++||||||.+++. ++..++.. +...++|||+|+++|+.|+.+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--------~~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--------KRFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--------CccCeEEEEecHHHHHHHHHHHH
Confidence 58999999998876 2 36899999999999987544 33334332 24568999999999999999999
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-----cCCCCCcceeeecCCccccc-
Q 007829 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-----KMNLDNCRYLTLDEADRLVD- 313 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-----~~~l~~~~~lIvDEah~l~~- 313 (588)
..+.... ......+++....... .......|+|+|+++|...+... ...+..+++||+||||+-..
T Consensus 484 ~~~~~~~------~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~ 555 (1123)
T PRK11448 484 KDTKIEG------DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTL 555 (1123)
T ss_pred Hhccccc------ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcc
Confidence 8873210 1111111111111111 11234689999999997765431 24567889999999999531
Q ss_pred --------CC------CHHHHHHHHHhhhhcceEEEEeeccchHHHHHH--------------HHhcc---CCeEEEec-
Q 007829 314 --------LG------FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFA--------------RSALV---KPVTVNVG- 361 (588)
Q Consensus 314 --------~~------~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~--------------~~~l~---~p~~i~~~- 361 (588)
.+ +...++.++.++. .-.|+|||||......+. ..++. .|+.+...
T Consensus 556 d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~ 633 (1123)
T PRK11448 556 DKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRL 633 (1123)
T ss_pred ccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEe
Confidence 11 2367788888774 357999999964332211 11222 12222210
Q ss_pred -CCCCc--cc-----------ceE-----EEeeehh-h-------HHHH----HHHHHHhhc-CCCCEEEEeCccccHHH
Q 007829 362 -RAGAA--NL-----------DVI-----QEVEYVK-Q-------EAKI----VYLLECLQK-TPPPVLIFCENKADVDD 409 (588)
Q Consensus 362 -~~~~~--~~-----------~v~-----~~~~~~~-~-------~~k~----~~ll~~l~~-~~~~viIF~~s~~~~~~ 409 (588)
..+.. .. .+. ..+.+.. . .... ..+.+.+.. .++++||||.++.+|+.
T Consensus 634 ~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~ 713 (1123)
T PRK11448 634 SQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADM 713 (1123)
T ss_pred ccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHH
Confidence 00000 00 000 0000000 0 0011 122233322 34699999999999999
Q ss_pred HHHHHHHc------CC---cEEEEeCCCCHHHHHHHHHHHhcCCc-EEEEEcCccccCCCCCCcceEEecCCCCChhHHH
Q 007829 410 IHEYLLLK------GV---EAVAVHGGKDQEEREYAISSFKAGKK-DVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 479 (588)
Q Consensus 410 l~~~L~~~------g~---~~~~ihg~~~~~~r~~~~~~F~~g~~-~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~ 479 (588)
+.+.|... ++ .+..+||+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+
T Consensus 714 i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 714 VVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 99887653 22 4567899875 56789999999987 6999999999999999999999999999999999
Q ss_pred HHhcccCCCC
Q 007829 480 HRIGRTGRCG 489 (588)
Q Consensus 480 QriGRagR~g 489 (588)
||+||+.|..
T Consensus 792 QmIGRgtR~~ 801 (1123)
T PRK11448 792 QMLGRATRLC 801 (1123)
T ss_pred HHHhhhccCC
Confidence 9999999974
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=8e-27 Score=251.06 Aligned_cols=332 Identities=20% Similarity=0.239 Sum_probs=241.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHH--HHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007829 149 RFPEPILKKLKAKGIVQPTPIQVQGL--PVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 149 ~l~~~l~~~l~~~g~~~p~~~Q~~~i--~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
+++....-..+.+|+.+++.||.+++ |.++.++|+|..+||+.|||+++-+-++..++. .+..++++.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~----------~rr~~llil 276 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC----------RRRNVLLIL 276 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH----------HhhceeEec
Confidence 34444444555569999999999998 668899999999999999999999999988776 345689999
Q ss_pred CCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--ccCCCCCcceee
Q 007829 227 PSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--KKMNLDNCRYLT 304 (588)
Q Consensus 227 Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~--~~~~l~~~~~lI 304 (588)
|..+.+..-...+..+...+ ++++-.+.|..+..... +.-++.|||.++-..++.. ..-.+..+++||
T Consensus 277 p~vsiv~Ek~~~l~~~~~~~------G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vv 346 (1008)
T KOG0950|consen 277 PYVSIVQEKISALSPFSIDL------GFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVV 346 (1008)
T ss_pred ceeehhHHHHhhhhhhcccc------CCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEE
Confidence 99999998888888888776 88888888776554332 2358999999998665543 233467889999
Q ss_pred ecCCcccccCCCHHHHHHHHHhh-----hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCccc--ceEEEeeeh
Q 007829 305 LDEADRLVDLGFEDDIREVFDHF-----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL--DVIQEVEYV 377 (588)
Q Consensus 305 vDEah~l~~~~~~~~i~~i~~~~-----~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~--~v~~~~~~~ 377 (588)
|||.|.+.+.+.+..++.++..+ ....|+|+||||+|+. .+++.++..-+.....++-.... .+-..+...
T Consensus 347 VdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~ 424 (1008)
T KOG0950|consen 347 VDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYES 424 (1008)
T ss_pred EeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccc
Confidence 99999999999888888777654 3346799999999975 34444444322222111100000 000000000
Q ss_pred hh-------------------HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc---------------------
Q 007829 378 KQ-------------------EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--------------------- 417 (588)
Q Consensus 378 ~~-------------------~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--------------------- 417 (588)
.. .+.+..+.......+.++||||+++..|+.++..+...
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 00 01112222222223457999999999999988665321
Q ss_pred -----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC----CCChh
Q 007829 418 -----------------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM----PAEIE 476 (588)
Q Consensus 418 -----------------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~----p~s~~ 476 (588)
-+.+..+|+|++.++|..+...|+.|...|++||+.++.|+++|..+++|-.-+ ..+.-
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~ 584 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRL 584 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhh
Confidence 233677899999999999999999999999999999999999999998884432 34788
Q ss_pred HHHHHhcccCCCCC--ccEEEEEEcCCC
Q 007829 477 NYVHRIGRTGRCGK--TGIATTFINKNQ 502 (588)
Q Consensus 477 ~y~QriGRagR~g~--~g~~~~~~~~~~ 502 (588)
.|.||+|||||.|- .|.+++++.+.+
T Consensus 585 ~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 585 EYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred hHHhhhhhhhhcccccCcceEEEeeccc
Confidence 99999999999974 588888888774
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.2e-25 Score=212.16 Aligned_cols=297 Identities=22% Similarity=0.256 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.+++|.|..+-..++ +..++++.|-||+|||.. +.+.+..++. .|.++.+..|....|..++.++
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh----------cCCeEEEecCcccchHHHHHHH
Confidence 378999998877765 668999999999999965 4556666655 5889999999999999999999
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHH
Q 007829 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~ 319 (588)
+.-+. +..+.+++|+.+..-+ .+++|||..+|+.+- +.++++|+||+|.+.-..- ..
T Consensus 165 k~aF~--------~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d-~~ 221 (441)
T COG4098 165 KQAFS--------NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDD-QS 221 (441)
T ss_pred HHhhc--------cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCC-HH
Confidence 98754 6778889988655432 689999998887663 4578999999998753221 22
Q ss_pred HHHH-HHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh----------HHHHHHHHH
Q 007829 320 IREV-FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ----------EAKIVYLLE 388 (588)
Q Consensus 320 i~~i-~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~----------~~k~~~ll~ 388 (588)
+... -+..+...-+|.+|||+++.++.-+...-..++. +...-....-....+.+... ..++...++
T Consensus 222 L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~~~~k--lp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~le 299 (441)
T COG4098 222 LQYAVKKARKKEGATIYLTATPTKKLERKILKGNLRILK--LPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLE 299 (441)
T ss_pred HHHHHHHhhcccCceEEEecCChHHHHHHhhhCCeeEee--cchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHH
Confidence 2222 2233444568999999998876554433222222 22111111112222223221 123444444
Q ss_pred HhhcCCCCEEEEeCccccHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceE
Q 007829 389 CLQKTPPPVLIFCENKADVDDIHEYLLLK-G-VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 389 ~l~~~~~~viIF~~s~~~~~~l~~~L~~~-g-~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~V 466 (588)
.-.+.+.|++||++++...+.++..|+.. . ...+.+|+. ...|.+.+++|++|++.+||+|.+++||+.+|+|+++
T Consensus 300 kq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~ 377 (441)
T COG4098 300 KQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVF 377 (441)
T ss_pred HHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEE
Confidence 44557889999999999999999999543 3 345778884 4578899999999999999999999999999999996
Q ss_pred EecCCC--CChhHHHHHhcccCCCC--CccEEEEEE
Q 007829 467 INYDMP--AEIENYVHRIGRTGRCG--KTGIATTFI 498 (588)
Q Consensus 467 I~~~~p--~s~~~y~QriGRagR~g--~~g~~~~~~ 498 (588)
|.-.-- .+.+..+|..||+||.- .+|.+..|-
T Consensus 378 Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 378 VLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred EecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 643322 47889999999999983 345544443
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4.6e-26 Score=211.79 Aligned_cols=165 Identities=32% Similarity=0.578 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
||+|.++|+.+.+|+++++.||||+|||+++++|++..+... ...+++|++|+++|+.|+.+.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------~~~~~lii~P~~~l~~q~~~~~~~~~~~- 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---------KDARVLIIVPTRALAEQQFERLRKFFSN- 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------SSSEEEEEESSHHHHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---------CCceEEEEeecccccccccccccccccc-
Confidence 799999999999999999999999999999999999887652 2348999999999999999999999764
Q ss_pred cccCCCCceEEEEEcCcchH-HHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHH
Q 007829 247 RDAGYPDLRTLLCIGGVDMR-SQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD 325 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~-~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~ 325 (588)
+++++..++|+.... .....+..+++|+|+||++|.+++.....++.++++|||||+|.+..+++...+..++.
T Consensus 71 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~ 145 (169)
T PF00270_consen 71 -----TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILR 145 (169)
T ss_dssp -----TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHH
T ss_pred -----cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHH
Confidence 378899999988765 44455556799999999999999988666778899999999999999888888999988
Q ss_pred hhhh--cceEEEEeeccchHHHH
Q 007829 326 HFKA--QRQTLLFSATMPTKIQN 346 (588)
Q Consensus 326 ~~~~--~~q~l~~SAT~~~~i~~ 346 (588)
.+.. ..|++++|||+++.+++
T Consensus 146 ~~~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 146 RLKRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp HSHTTTTSEEEEEESSSTHHHHH
T ss_pred HhcCCCCCcEEEEeeCCChhHhh
Confidence 8754 48899999999977654
No 103
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=9.2e-25 Score=229.17 Aligned_cols=315 Identities=23% Similarity=0.327 Sum_probs=224.9
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.++++|.+++..+. +|-+.|+...+|.|||+-. +.++.++.... +-+||. ||+||...|.+ |.++|.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~------~~~GPf-LVi~P~StL~N-W~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK------GIPGPF-LVIAPKSTLDN-WMNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc------CCCCCe-EEEeeHhhHHH-HHHHHH
Confidence 68999999998875 7889999999999999653 44444443311 125664 99999999876 566699
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHH-HH--hcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCH
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLE-VV--KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~-~l--~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~ 317 (588)
+|+ |++++++++|+...+.... .+ ....+|+|+|++..+.- +..+.--.++|+|||||||+.+..
T Consensus 238 rf~--------P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~-- 305 (971)
T KOG0385|consen 238 RFT--------PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK-- 305 (971)
T ss_pred HhC--------CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--
Confidence 996 5899999999864433221 11 23679999999876433 233334567899999999999876
Q ss_pred HHHHHHHHhhhhcceEEEEeeccc-hHHHHH-------------------------------------------------
Q 007829 318 DDIREVFDHFKAQRQTLLFSATMP-TKIQNF------------------------------------------------- 347 (588)
Q Consensus 318 ~~i~~i~~~~~~~~q~l~~SAT~~-~~i~~~------------------------------------------------- 347 (588)
..+..+++.+.... .+++|+|+- +.+.++
T Consensus 306 s~L~~~lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 306 SKLSKILREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred hHHHHHHHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 56667788776555 477788851 010000
Q ss_pred --------------------------------------------------------HHHhccCCeEEEecCCCCcccceE
Q 007829 348 --------------------------------------------------------ARSALVKPVTVNVGRAGAANLDVI 371 (588)
Q Consensus 348 --------------------------------------------------------~~~~l~~p~~i~~~~~~~~~~~v~ 371 (588)
+++....|..+....++..-....
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 001111111110000000000000
Q ss_pred EEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC---cEEE
Q 007829 372 QEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK---KDVL 448 (588)
Q Consensus 372 ~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~---~~VL 448 (588)
..+.-......+..|+..|.+.+++||||.......+.|.+|+..+++.+..+.|.++.++|..+++.|.... .-+|
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 0000111223466778888889999999999999999999999999999999999999999999999999654 4478
Q ss_pred EEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEE--EEEEcCC
Q 007829 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~--~~~~~~~ 501 (588)
++|.+++.|||+..+++||.||..|+|..-.|...||.|.|++..+ +-|++.+
T Consensus 545 LSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred EeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999999999988755 5556665
No 104
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.4e-23 Score=230.62 Aligned_cols=125 Identities=21% Similarity=0.296 Sum_probs=112.1
Q ss_pred ehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 376 YVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 376 ~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
|.....|+..+++.+ ...+.|+||||+|+..++.++.+|...|+++..+|+ .+.+|+..+..|+.+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 444566777777766 346789999999999999999999999999999997 688999999999999999999999
Q ss_pred ccccCCCCC---Ccce-----EEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 453 VASKGLDFP---DIQH-----VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 453 ~~~~GlDip---~v~~-----VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
+++||+||+ +|.. ||++..|.|...|.|++|||||.|.+|.+.+|++.++
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999999 5543 4999999999999999999999999999999999874
No 105
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=2.2e-21 Score=213.56 Aligned_cols=109 Identities=27% Similarity=0.404 Sum_probs=104.2
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC-
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD- 470 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~- 470 (588)
+.+.++||||+++..++.++++|...|+.+..+||++++.+|..++..|+.|+++|||||+.+++|+|+|++++||++|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 4577899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----CCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 471 ----MPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 471 ----~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
.|.+...|+||+|||||. ..|.+++|++..
T Consensus 520 difG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 520 DKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred ccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 899999999999999998 689999999876
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.6e-22 Score=227.47 Aligned_cols=319 Identities=21% Similarity=0.219 Sum_probs=214.1
Q ss_pred CcHHHHHHHHHHhcC---C-CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 166 PTPIQVQGLPVVLSG---R-DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 166 p~~~Q~~~i~~il~g---~-dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+++.|..++..++.. . .+++.||||+|||.+.+.+++...... ....++++++.|++.+++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------IKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------ccccceEEEEccHHHHHHHHHHHHHh
Confidence 489999999988843 4 788999999999999999988765441 12578999999999999999999998
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHH--------------HhcCCcEEEeChHHHHHHHHcc-cCC-C--CCccee
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEV--------------VKRGVHIVVATPGRLKDMLAKK-KMN-L--DNCRYL 303 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~--------------l~~~~~IvV~Tp~~l~~~l~~~-~~~-l--~~~~~l 303 (588)
++... .......+|.....-.... ......+.++||..+....... ... + -..+++
T Consensus 269 ~~~~~------~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~v 342 (733)
T COG1203 269 IFGLF------SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLV 342 (733)
T ss_pred hhccc------ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhch
Confidence 76432 1111112222211110000 0012456667766654422221 111 1 123579
Q ss_pred eecCCcccccCCCHHHHHHHHHhh-hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCC---cccceEEEeeehhh
Q 007829 304 TLDEADRLVDLGFEDDIREVFDHF-KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA---ANLDVIQEVEYVKQ 379 (588)
Q Consensus 304 IvDEah~l~~~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~---~~~~v~~~~~~~~~ 379 (588)
|+||+|.+.+......+..++..+ .....+|++|||+|+...+.+...+.+...+....... ....+.+. ....-
T Consensus 343 IlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~ 421 (733)
T COG1203 343 ILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK-ERVDV 421 (733)
T ss_pred hhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc-cchhh
Confidence 999999998763222333333333 23567999999999999999888877665443321100 00111111 11111
Q ss_pred HHH----HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh----cCCcEEEEEc
Q 007829 380 EAK----IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK----AGKKDVLVAT 451 (588)
Q Consensus 380 ~~k----~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~----~g~~~VLVaT 451 (588)
... ...+...-.+.+.+++|.|||+..|..+++.|+..+.++..+||.+...+|.+.++.++ .+...|+|||
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaT 501 (733)
T COG1203 422 EDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVAT 501 (733)
T ss_pred hhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEe
Confidence 111 11112222335679999999999999999999999888999999999999998888655 5688999999
Q ss_pred CccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCC--CccEEEEEEcCC
Q 007829 452 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG--KTGIATTFINKN 501 (588)
Q Consensus 452 ~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g--~~g~~~~~~~~~ 501 (588)
++.+.|+|+ +.+++|-== ..+...+||+||++|-| ..|.++++....
T Consensus 502 QVIEagvDi-dfd~mITe~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 502 QVIEAGVDI-DFDVLITEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred eEEEEEecc-ccCeeeecC--CCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 999999999 588777553 44889999999999999 667777777655
No 107
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.90 E-value=4.3e-23 Score=226.35 Aligned_cols=368 Identities=22% Similarity=0.310 Sum_probs=240.3
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcC---eEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----
Q 007829 106 TGWKPPLPIRRMSKKACDLIRKQWH---IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL---- 178 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~r~~~~---i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il---- 178 (588)
..|.....|..+...+++.+...-. .+-.+...-++-..|..+...+..+.. ..++.+|.++++.++
T Consensus 314 ~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~ 387 (1373)
T KOG0384|consen 314 CTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWY 387 (1373)
T ss_pred ccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHH
Confidence 4555555555444455555433321 111222222333344444444433332 579999999999987
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.+.++|+...+|.|||+- .+..|..+.+... -.|| .|||+|...+.. |.+.|..+. .+++++
T Consensus 388 ~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~------~~gp-flvvvplst~~~-W~~ef~~w~---------~mn~i~ 449 (1373)
T KOG0384|consen 388 KRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ------IHGP-FLVVVPLSTITA-WEREFETWT---------DMNVIV 449 (1373)
T ss_pred hcccceehhhcCCCcchH-HHHHHHHHHHhhh------ccCC-eEEEeehhhhHH-HHHHHHHHh---------hhceee
Confidence 689999999999999954 3444444444321 1455 489999977665 556687775 689999
Q ss_pred EEcCcchHHHHHHHh----c-----CCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhh
Q 007829 259 CIGGVDMRSQLEVVK----R-----GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 329 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~----~-----~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~ 329 (588)
++|....++.+.... . ..+++++|++.++.- +..+.--.+.+++|||||++.+.. ..+-..+..+..
T Consensus 450 y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~ 525 (1373)
T KOG0384|consen 450 YHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKNDE--SKLYESLNQFKM 525 (1373)
T ss_pred eecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCchH--HHHHHHHHHhcc
Confidence 999887776665442 1 378999999766321 112222345789999999998643 444455666654
Q ss_pred cceEEEEeeccc-hHHHHHH------------------------------------HHhc-------------cCCeE-E
Q 007829 330 QRQTLLFSATMP-TKIQNFA------------------------------------RSAL-------------VKPVT-V 358 (588)
Q Consensus 330 ~~q~l~~SAT~~-~~i~~~~------------------------------------~~~l-------------~~p~~-i 358 (588)
.. -|++|+|+- +.+.++. +-++ .++.. +
T Consensus 526 ~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~Il 604 (1373)
T KOG0384|consen 526 NH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETIL 604 (1373)
T ss_pred cc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEE
Confidence 44 466777752 1111110 0000 00000 0
Q ss_pred Ee-----------------------cCCCC--cccceEEEe-------eeh-h-----------------------hHHH
Q 007829 359 NV-----------------------GRAGA--ANLDVIQEV-------EYV-K-----------------------QEAK 382 (588)
Q Consensus 359 ~~-----------------------~~~~~--~~~~v~~~~-------~~~-~-----------------------~~~k 382 (588)
.+ +..+. ...++..+. ..+ . ...|
T Consensus 605 rVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGK 684 (1373)
T KOG0384|consen 605 RVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGK 684 (1373)
T ss_pred EeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCc
Confidence 00 00000 000100000 000 0 0011
Q ss_pred ---HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc---CCcEEEEEcCcccc
Q 007829 383 ---IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA---GKKDVLVATDVASK 456 (588)
Q Consensus 383 ---~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~---g~~~VLVaT~~~~~ 456 (588)
+..|+..|.+.+++||||.......+.|++||..+++++-.+.|....+-|..++++|.. ....+|+||.+.+.
T Consensus 685 lVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGL 764 (1373)
T KOG0384|consen 685 LVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGL 764 (1373)
T ss_pred EEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcc
Confidence 334555667788999999999999999999999999999999999999999999999985 35678999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccE--EEEEEcCCC
Q 007829 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI--ATTFINKNQ 502 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~--~~~~~~~~~ 502 (588)
|||+..+++||+||..|||.+-+|...||.|.|++.. +|-|++.+.
T Consensus 765 GINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999999998875 567788774
No 108
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2e-21 Score=205.28 Aligned_cols=319 Identities=19% Similarity=0.246 Sum_probs=217.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 148 MRFPEPILKKLKAKGIVQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 148 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+.+|..|. ..+.++|+.++..+. ++..-|+...+|.|||+- .+..|..+.+.. .-...+|
T Consensus 196 ~~vPg~I~--------~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~-------k~~~paL 259 (923)
T KOG0387|consen 196 FKVPGFIW--------SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG-------KLTKPAL 259 (923)
T ss_pred ccccHHHH--------HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc-------cccCceE
Confidence 55666654 356799999999876 566789999999999954 334444444431 1125689
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcch--------HHHHH-----HHhcCCcEEEeChHHHHHHH
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM--------RSQLE-----VVKRGVHIVVATPGRLKDML 290 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--------~~~~~-----~l~~~~~IvV~Tp~~l~~~l 290 (588)
||||. .+..||.+++..| +|.+++.+++|..+. ..... ....+.+|+|+|++.+.-.
T Consensus 260 IVCP~-Tii~qW~~E~~~w--------~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~- 329 (923)
T KOG0387|consen 260 IVCPA-TIIHQWMKEFQTW--------WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ- 329 (923)
T ss_pred EEccH-HHHHHHHHHHHHh--------CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-
Confidence 99998 6778888889998 568899999875442 00011 1122468999999777322
Q ss_pred HcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccc-hHHHHH----------------------
Q 007829 291 AKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP-TKIQNF---------------------- 347 (588)
Q Consensus 291 ~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~-~~i~~~---------------------- 347 (588)
...+.-..++|+|+||.|++.+.+ .++...+..++.. +.+.+|+|+- +++.++
T Consensus 330 -~d~l~~~~W~y~ILDEGH~IrNpn--s~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f 405 (923)
T KOG0387|consen 330 -GDDLLGILWDYVILDEGHRIRNPN--SKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNF 405 (923)
T ss_pred -CcccccccccEEEecCcccccCCc--cHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhh
Confidence 233444567899999999998866 5555555555433 4566677751 111110
Q ss_pred ------------------------------H-------------------------------------------------
Q 007829 348 ------------------------------A------------------------------------------------- 348 (588)
Q Consensus 348 ------------------------------~------------------------------------------------- 348 (588)
+
T Consensus 406 ~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i 485 (923)
T KOG0387|consen 406 EHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI 485 (923)
T ss_pred hhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH
Confidence 0
Q ss_pred --------------HHhccCCeEEEecCCCCcccceEEEe---eehhhHHH---HHHHHHHhhcCCCCEEEEeCccccHH
Q 007829 349 --------------RSALVKPVTVNVGRAGAANLDVIQEV---EYVKQEAK---IVYLLECLQKTPPPVLIFCENKADVD 408 (588)
Q Consensus 349 --------------~~~l~~p~~i~~~~~~~~~~~v~~~~---~~~~~~~k---~~~ll~~l~~~~~~viIF~~s~~~~~ 408 (588)
++.+..|..+.-.. ....+.. .......| +..++....+.+.++|+|..++...+
T Consensus 486 ~ng~~~~l~Gi~iLrkICnHPdll~~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLd 560 (923)
T KOG0387|consen 486 LNGKRNCLSGIDILRKICNHPDLLDRRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLD 560 (923)
T ss_pred HcCCccceechHHHHhhcCCcccccCcc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHH
Confidence 00000110000000 0000000 11122223 44444545567889999999999999
Q ss_pred HHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHHhcCCc-E-EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhccc
Q 007829 409 DIHEYLL-LKGVEAVAVHGGKDQEEREYAISSFKAGKK-D-VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485 (588)
Q Consensus 409 ~l~~~L~-~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~-~-VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRa 485 (588)
.|...|. ..|+.+..+.|..+...|..+++.|+++.. . +|++|.+.+.|+|+..++-||.||+.|+|..-.|..-||
T Consensus 561 ilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRa 640 (923)
T KOG0387|consen 561 ILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERA 640 (923)
T ss_pred HHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHH
Confidence 9999998 689999999999999999999999998753 3 688899999999999999999999999999999999999
Q ss_pred CCCCCccEEE--EEEcCC
Q 007829 486 GRCGKTGIAT--TFINKN 501 (588)
Q Consensus 486 gR~g~~g~~~--~~~~~~ 501 (588)
.|.|++.-++ -|++..
T Consensus 641 wRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 641 WRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred HhhcCccceEEEEEecCC
Confidence 9999886544 455554
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=2.2e-20 Score=207.28 Aligned_cols=134 Identities=23% Similarity=0.343 Sum_probs=114.2
Q ss_pred hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC
Q 007829 391 QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470 (588)
Q Consensus 391 ~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~ 470 (588)
.+.+.++||||+++..++.+++.|...|+.+..+||++++.+|..++..|+.|++.|||||+++++|+|+|++++||+++
T Consensus 443 ~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred HhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C-----CCChhHHHHHhcccCCCCCccEEEEEEcCC--------CChhHHHHHHHHHHHhcCcCchHH
Q 007829 471 M-----PAEIENYVHRIGRTGRCGKTGIATTFINKN--------QSETTLLDLKHLLQEAKQRIPPVL 525 (588)
Q Consensus 471 ~-----p~s~~~y~QriGRagR~g~~g~~~~~~~~~--------~~~~~~~~l~~~l~~~~~~vp~~l 525 (588)
. |.+...|+||+||+||. ..|.+++|++.. .+...+.++...+......+|...
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred CcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 5 78999999999999996 789999999853 122334444444445555566543
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.2e-21 Score=209.03 Aligned_cols=289 Identities=25% Similarity=0.378 Sum_probs=202.7
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 153 PILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 153 ~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+.+.+.+. |+ .|+..|.-....++.|++.-++||||.|||.--++..+-.. ..|.++++|+||..|
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-----------~kgkr~yii~PT~~L 137 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-----------KKGKRVYIIVPTTTL 137 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-----------hcCCeEEEEecCHHH
Confidence 444566666 55 89999999999999999999999999999954433333221 257899999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhc-CCcEEEeChHHHHHHHHcccCCCC--Ccceeee
Q 007829 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNLD--NCRYLTL 305 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l~--~~~~lIv 305 (588)
+.|+++.+.++..... ...+.++ +++..+..+. ...+.+ +.||+|+|..-| .++.-.+. ++++|++
T Consensus 138 v~Q~~~kl~~~~e~~~---~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL----~k~~e~L~~~kFdfifV 209 (1187)
T COG1110 138 VRQVYERLKKFAEDAG---SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFL----SKRFEELSKLKFDFIFV 209 (1187)
T ss_pred HHHHHHHHHHHHhhcC---Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHH----HhhHHHhcccCCCEEEE
Confidence 9999999999986542 2244555 7776555443 333443 589999997444 33332333 6889999
Q ss_pred cCCcccccC-----------CCHHHH-------HHHHHhh------------------------hhcceEEEEeeccchH
Q 007829 306 DEADRLVDL-----------GFEDDI-------REVFDHF------------------------KAQRQTLLFSATMPTK 343 (588)
Q Consensus 306 DEah~l~~~-----------~~~~~i-------~~i~~~~------------------------~~~~q~l~~SAT~~~~ 343 (588)
|.+|.++.. ||...+ ..+...+ ....+++..|||..+.
T Consensus 210 DDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~r 289 (1187)
T COG1110 210 DDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPR 289 (1187)
T ss_pred ccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCC
Confidence 999987643 333211 1111111 0124789999998543
Q ss_pred H--HHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCc---cccHHHHHHHHHHcC
Q 007829 344 I--QNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN---KADVDDIHEYLLLKG 418 (588)
Q Consensus 344 i--~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s---~~~~~~l~~~L~~~g 418 (588)
- ..+.+.++. +.++.......|+....... .....+++.+.+.+...|||++. +..++.++++|+..|
T Consensus 290 g~R~~LfReLlg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~G 362 (1187)
T COG1110 290 GSRLKLFRELLG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHG 362 (1187)
T ss_pred CchHHHHHHHhC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcC
Confidence 2 233444443 23344333444554443333 33444555566667789999999 899999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc----CccccCCCCCC-cceEEecCCCC
Q 007829 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT----DVASKGLDFPD-IQHVINYDMPA 473 (588)
Q Consensus 419 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT----~~~~~GlDip~-v~~VI~~~~p~ 473 (588)
+++..+|++. ...++.|..|+++|||++ .++-||||+|. ++.+|+++.|+
T Consensus 363 i~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 363 INAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ceEEEeeccc-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9999999943 567999999999999886 46789999998 88999999993
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.1e-20 Score=202.83 Aligned_cols=313 Identities=22% Similarity=0.244 Sum_probs=221.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+.-.++.|+ |..+.||+|||+++.+|++..++. |..|.|++|+..||.|-++.+..++
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-----------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-----------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 378999999999999886 789999999999999999877654 7779999999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-cCC
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-DLG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~-~~~ 315 (588)
..+ ++++.++.++.+..+....+ .++|+++|...| .|.|..+ ......+.+.||||+|.++ |..
T Consensus 144 ~~L------GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA 215 (764)
T PRK12326 144 EAL------GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA 215 (764)
T ss_pred Hhc------CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc
Confidence 887 99999999887766544444 489999998765 2333322 2335678899999999875 100
Q ss_pred --------------CHHHHHHHHHhhhh----------------------------------------------------
Q 007829 316 --------------FEDDIREVFDHFKA---------------------------------------------------- 329 (588)
Q Consensus 316 --------------~~~~i~~i~~~~~~---------------------------------------------------- 329 (588)
....+..+...+..
T Consensus 216 rtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~ 295 (764)
T PRK12326 216 LVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAH 295 (764)
T ss_pred cCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHH
Confidence 00111111111110
Q ss_pred ------------------------------------------------------------------cceEEEEeeccchH
Q 007829 330 ------------------------------------------------------------------QRQTLLFSATMPTK 343 (588)
Q Consensus 330 ------------------------------------------------------------------~~q~l~~SAT~~~~ 343 (588)
...+.+||+|....
T Consensus 296 ~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~ 375 (764)
T PRK12326 296 ALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAA 375 (764)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhH
Confidence 01244566666555
Q ss_pred HHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCCc
Q 007829 344 IQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGVE 420 (588)
Q Consensus 344 i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~~ 420 (588)
..+|.+.+-...+.|... .+....+ .....+.....|+..+++.+. +.+.||||.+.|+..++.++..|...|++
T Consensus 376 ~~Ef~~iY~l~Vv~IPtn-kp~~R~d-~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 376 GEQLRQFYDLGVSVIPPN-KPNIRED-EADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred HHHHHHHhCCcEEECCCC-CCceeec-CCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 444444443332222111 1111111 122344556667777766553 47889999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCC-cEEEEEcCccccCCCCCC---------------cceEEecCCCCChhHHHHHhcc
Q 007829 421 AVAVHGGKDQEEREYAISSFKAGK-KDVLVATDVASKGLDFPD---------------IQHVINYDMPAEIENYVHRIGR 484 (588)
Q Consensus 421 ~~~ihg~~~~~~r~~~~~~F~~g~-~~VLVaT~~~~~GlDip~---------------v~~VI~~~~p~s~~~y~QriGR 484 (588)
...+++.-...+ ..++. ..|+ -.|-|||++++||.||.= ==|||--..+.|..--.|-.||
T Consensus 454 h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGR 530 (764)
T PRK12326 454 AVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGR 530 (764)
T ss_pred ceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcc
Confidence 999998744333 22222 2453 568999999999999962 2278888899999999999999
Q ss_pred cCCCCCccEEEEEEcCCC
Q 007829 485 TGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 485 agR~g~~g~~~~~~~~~~ 502 (588)
+||.|.+|.+..|++-++
T Consensus 531 aGRQGDpGss~f~lSleD 548 (764)
T PRK12326 531 AGRQGDPGSSVFFVSLED 548 (764)
T ss_pred cccCCCCCceeEEEEcch
Confidence 999999999999998774
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=8.4e-20 Score=209.56 Aligned_cols=332 Identities=18% Similarity=0.212 Sum_probs=204.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007829 151 PEPILKKLKAKGIVQPTPIQVQGLP----VVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~----~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
++.+...+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++..+. .+.+++|.+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----------~~~~vvi~t 299 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----------TEKPVVIST 299 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----------CCCeEEEEe
Confidence 34667777777886 8999998776 4447899999999999999999999987653 245899999
Q ss_pred CCHHHHHHHHH-HHHHHhhcccccCCCCceEEEEEcCcch----------------------------------------
Q 007829 227 PSRELARQTYE-VVEQFLTPMRDAGYPDLRTLLCIGGVDM---------------------------------------- 265 (588)
Q Consensus 227 Ptr~La~Q~~~-~~~~~~~~~~~~~~~~i~~~~~~gg~~~---------------------------------------- 265 (588)
||++|..|+.. .+..+.+.+. ..++++++.|+.+.
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~----~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~e 375 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILN----FKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDE 375 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcC----CCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhh
Confidence 99999999865 4544433220 03555555553321
Q ss_pred -------------------------------HHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccC
Q 007829 266 -------------------------------RSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 266 -------------------------------~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~ 314 (588)
..........++|||++...|.+.+......+....++||||||++.+.
T Consensus 376 l~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 376 LNLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDI 455 (850)
T ss_pred ccCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHH
Confidence 0000111124899999998887766443333455689999999998641
Q ss_pred C-------C-----HHH---------------------------------------------------------------
Q 007829 315 G-------F-----EDD--------------------------------------------------------------- 319 (588)
Q Consensus 315 ~-------~-----~~~--------------------------------------------------------------- 319 (588)
. + ...
T Consensus 456 a~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 535 (850)
T TIGR01407 456 AENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVD 535 (850)
T ss_pred HHHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 0 000
Q ss_pred -HHHHHHh-----------h-------------------------------------hhcceEEEEeeccchH-HHHHHH
Q 007829 320 -IREVFDH-----------F-------------------------------------KAQRQTLLFSATMPTK-IQNFAR 349 (588)
Q Consensus 320 -i~~i~~~-----------~-------------------------------------~~~~q~l~~SAT~~~~-i~~~~~ 349 (588)
+...+.. + +....+|++|||+... -.++..
T Consensus 536 ~l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~ 615 (850)
T TIGR01407 536 QLRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFP 615 (850)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHH
Confidence 0000000 0 0012578999999631 123333
Q ss_pred HhccC--CeEEEec-CCCC--cccc--eEEEee---ehhhHH---H-HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHH
Q 007829 350 SALVK--PVTVNVG-RAGA--ANLD--VIQEVE---YVKQEA---K-IVYLLECLQKTPPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 350 ~~l~~--p~~i~~~-~~~~--~~~~--v~~~~~---~~~~~~---k-~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~ 415 (588)
..+.- ....... ..-. .+.. +...+. ....+. . ...+.+.+...++++|||++|....+.++..|.
T Consensus 616 ~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~ 695 (850)
T TIGR01407 616 QLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLN 695 (850)
T ss_pred HhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHh
Confidence 33331 1111111 1100 0000 000010 011111 1 222334444567899999999999999999997
Q ss_pred H----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcc--eEEecCCCCC---------------
Q 007829 416 L----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ--HVINYDMPAE--------------- 474 (588)
Q Consensus 416 ~----~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~--~VI~~~~p~s--------------- 474 (588)
. .++. .+..+.. ..|..+++.|++|+..||++|+.+++|||+|+.. +||...+|..
T Consensus 696 ~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~ 772 (850)
T TIGR01407 696 ELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLE 772 (850)
T ss_pred hhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 5 2333 3334433 5788999999999999999999999999999966 5777777631
Q ss_pred ---------------hhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 475 ---------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 ---------------~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+..+.|.+||.-|.....-++++++..
T Consensus 773 ~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 773 QEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 123468899999986555456666544
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.6e-19 Score=197.23 Aligned_cols=311 Identities=22% Similarity=0.287 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHhcC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g----~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
...+++-|..++..+.+. ...++.+-||||||.+|+-.+-..+ . .|..+|||+|-.+|-.|+.+.
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~----------~GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-A----------QGKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-H----------cCCEEEEEeccccchHHHHHH
Confidence 346788999999999855 6789999999999999876655444 3 578999999999999999999
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccC
Q 007829 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~ 314 (588)
|+..+ +.++.+++++.+..+....+ . ..+.|||+|--.+ ...+.++.+|||||=|--.-.
T Consensus 265 f~~rF---------g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYK 328 (730)
T COG1198 265 FKARF---------GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYK 328 (730)
T ss_pred HHHHh---------CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEecccccccc
Confidence 99887 57788899988776654443 2 4689999994222 345889999999999975421
Q ss_pred ---C--CHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHH-----HHH
Q 007829 315 ---G--FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-----KIV 384 (588)
Q Consensus 315 ---~--~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~-----k~~ 384 (588)
+ +...=-.++..-..+.++|+-|||+.-+....+..-...... ...+.+.+...-...+....... -..
T Consensus 329 q~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~-L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 329 QEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLR-LTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred CCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEE-ccccccccCCCcceEEeccccccccCccCCH
Confidence 1 111112333444457789999999876655444322111111 11222211111111111111100 012
Q ss_pred HHHHHh---hcCCCCEEEEeCccc--------------------------------------------------------
Q 007829 385 YLLECL---QKTPPPVLIFCENKA-------------------------------------------------------- 405 (588)
Q Consensus 385 ~ll~~l---~~~~~~viIF~~s~~-------------------------------------------------------- 405 (588)
.+++.+ .+.+.++|+|.|.+-
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 233333 235678888888752
Q ss_pred ----cHHHHHHHHHHc--CCcEEEEeCCCCHH--HHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCC----
Q 007829 406 ----DVDDIHEYLLLK--GVEAVAVHGGKDQE--EREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA---- 473 (588)
Q Consensus 406 ----~~~~l~~~L~~~--g~~~~~ihg~~~~~--~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~---- 473 (588)
..+++.+.|... +.++..+.++.... .-...+..|.+|+.+|||.|.+++.|.|+|++..|...|...
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 255666666554 67788888876543 346789999999999999999999999999999977555431
Q ss_pred --------ChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 474 --------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 474 --------s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
...-+.|-.|||||.+.+|.+++=...-
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 2445788999999998888776655433
No 114
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=6.4e-20 Score=203.07 Aligned_cols=306 Identities=22% Similarity=0.266 Sum_probs=208.2
Q ss_pred HHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccc
Q 007829 169 IQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRD 248 (588)
Q Consensus 169 ~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~ 248 (588)
...+.+..+.+..-+|++|+||||||.. +|.+ +++... +.+..+.+.-|.|--|..+.+.+..-+..-
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~--lle~g~------~~~g~I~~tQPRRlAArsvA~RvAeel~~~-- 121 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQF--LLEEGL------GIAGKIGCTQPRRLAARSVAERVAEELGEK-- 121 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHH--HHhhhc------ccCCeEEecCchHHHHHHHHHHHHHHhCCC--
Confidence 3444555666778899999999999954 5543 222211 245577888899988888887776654321
Q ss_pred cCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccc-cCCCH-HHHHHHHHh
Q 007829 249 AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV-DLGFE-DDIREVFDH 326 (588)
Q Consensus 249 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~-~~~~~-~~i~~i~~~ 326 (588)
++-.|++-+-..+.. .....|-++|.|.|..++..... |+.+++||+||||.=. +-.+. ..+..++..
T Consensus 122 ---~G~~VGY~iRfe~~~------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~ 191 (845)
T COG1643 122 ---LGETVGYSIRFESKV------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLAR 191 (845)
T ss_pred ---cCceeeEEEEeeccC------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhh
Confidence 133344333221111 12368999999999999876655 8999999999999732 11111 123344455
Q ss_pred hhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehh---hHHHHHHHH-HHhhcCCCCEEEEeC
Q 007829 327 FKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK---QEAKIVYLL-ECLQKTPPPVLIFCE 402 (588)
Q Consensus 327 ~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~---~~~k~~~ll-~~l~~~~~~viIF~~ 402 (588)
.+.+-++|.||||+... .|...+-.-|+...-++.. ...+........ -++.+...+ ..+.+..+.+|||.+
T Consensus 192 rr~DLKiIimSATld~~--rfs~~f~~apvi~i~GR~f--PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLp 267 (845)
T COG1643 192 RRDDLKLIIMSATLDAE--RFSAYFGNAPVIEIEGRTY--PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLP 267 (845)
T ss_pred cCCCceEEEEecccCHH--HHHHHcCCCCEEEecCCcc--ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECC
Confidence 55567899999999865 4444443345544333321 112221111111 122222222 333456789999999
Q ss_pred ccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC-------
Q 007829 403 NKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM------- 471 (588)
Q Consensus 403 s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~------- 471 (588)
...+.+.+++.|.. ..+.+..+||.++.++..++++---.|+.+|++||++++.+|.||+|+.||.-+.
T Consensus 268 G~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~ 347 (845)
T COG1643 268 GQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYD 347 (845)
T ss_pred cHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccc
Confidence 99999999999987 3577888999999999999877777777779999999999999999999996554
Q ss_pred -----------CCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 472 -----------PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 472 -----------p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|-|-.+..||.|||||- .+|.|+-+++++
T Consensus 348 ~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~ 387 (845)
T COG1643 348 PRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEE 387 (845)
T ss_pred cccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHH
Confidence 34677889999999998 589999999864
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1.3e-19 Score=201.92 Aligned_cols=296 Identities=15% Similarity=0.151 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHh----c------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 166 PTPIQVQGLPVVL----S------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 166 p~~~Q~~~i~~il----~------g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
|+++|..|+..+. . .+..+++++||||||++.+..+...+ .. ...+++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--------~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--------LKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--------cCCCeEEEEECcHHHHHHH
Confidence 6889999998865 2 25799999999999988766554433 21 3578999999999999999
Q ss_pred HHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc-CCcEEEeChHHHHHHHHcc--cCCCCCc-ceeeecCCccc
Q 007829 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR-GVHIVVATPGRLKDMLAKK--KMNLDNC-RYLTLDEADRL 311 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~--~~~l~~~-~~lIvDEah~l 311 (588)
.+.|..+.... . .+..+.......+.. ...|+|+|.++|...+... ......- -+||+||||+.
T Consensus 310 ~~~f~~~~~~~-------~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs 377 (667)
T TIGR00348 310 MKEFQSLQKDC-------A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRS 377 (667)
T ss_pred HHHHHhhCCCC-------C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccc
Confidence 99999884210 0 111122222222322 3689999999997644321 1111111 28999999996
Q ss_pred ccCCCHHHHHHHH-HhhhhcceEEEEeeccchHHHHHHHHhcc---CCeEEEecCCCC----cccceEEEeee----h--
Q 007829 312 VDLGFEDDIREVF-DHFKAQRQTLLFSATMPTKIQNFARSALV---KPVTVNVGRAGA----ANLDVIQEVEY----V-- 377 (588)
Q Consensus 312 ~~~~~~~~i~~i~-~~~~~~~q~l~~SAT~~~~i~~~~~~~l~---~p~~i~~~~~~~----~~~~v~~~~~~----~-- 377 (588)
.. ..+...+ ..++ ....++|||||-..........+. ..+........+ ....+...... .
T Consensus 378 ~~----~~~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~ 452 (667)
T TIGR00348 378 QY----GELAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDR 452 (667)
T ss_pred cc----hHHHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccCh
Confidence 53 2334444 3444 456999999995321100001111 011111000000 00000000000 0
Q ss_pred ------------------hh-------------------HHHHHH----HHHHh----hcCCCCEEEEeCccccHHHHHH
Q 007829 378 ------------------KQ-------------------EAKIVY----LLECL----QKTPPPVLIFCENKADVDDIHE 412 (588)
Q Consensus 378 ------------------~~-------------------~~k~~~----ll~~l----~~~~~~viIF~~s~~~~~~l~~ 412 (588)
.. +..+.. +++.. ...+.+++|||.++..|..+++
T Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~ 532 (667)
T TIGR00348 453 KKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKN 532 (667)
T ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHH
Confidence 00 000111 11111 1124799999999999999999
Q ss_pred HHHHc-----CCcEEEEeCCCCHH---------------------HHHHHHHHHhc-CCcEEEEEcCccccCCCCCCcce
Q 007829 413 YLLLK-----GVEAVAVHGGKDQE---------------------EREYAISSFKA-GKKDVLVATDVASKGLDFPDIQH 465 (588)
Q Consensus 413 ~L~~~-----g~~~~~ihg~~~~~---------------------~r~~~~~~F~~-g~~~VLVaT~~~~~GlDip~v~~ 465 (588)
.|... +..++.+++..+.. ....++++|++ +..+|||.++++..|+|.|.+++
T Consensus 533 ~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~t 612 (667)
T TIGR00348 533 ALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNT 612 (667)
T ss_pred HHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccce
Confidence 88654 34566677654332 12468889976 68899999999999999999999
Q ss_pred EEecCCCCChhHHHHHhcccCCC
Q 007829 466 VINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 466 VI~~~~p~s~~~y~QriGRagR~ 488 (588)
++...+-.+ ..++|.+||+.|.
T Consensus 613 LyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 613 LYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEeccccc-cHHHHHHHHhccc
Confidence 998776555 4689999999993
No 116
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=6.1e-20 Score=201.70 Aligned_cols=314 Identities=20% Similarity=0.245 Sum_probs=216.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+--.+..|+ |..+.||+|||+++.+|++..++. |..|.|++||..||.|-++.+..++
T Consensus 81 m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~-----------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS-----------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 468888988777776665 889999999999999999876654 7789999999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-cCC
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-DLG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~-~~~ 315 (588)
..+ ++++.++.++.+..+....+. ++|+++|..-| .|.|..+ ......+.++||||+|.++ |..
T Consensus 148 ~~l------Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 148 EFL------GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred ccc------CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 877 999999988877666544443 89999998775 2334322 2234788999999999975 110
Q ss_pred ---------------CHHHHHHHHHhhhh--------------------c------------------------------
Q 007829 316 ---------------FEDDIREVFDHFKA--------------------Q------------------------------ 330 (588)
Q Consensus 316 ---------------~~~~i~~i~~~~~~--------------------~------------------------------ 330 (588)
....+..+...+.. .
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly 299 (913)
T PRK13103 220 RTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLY 299 (913)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhcc
Confidence 00111111111100 0
Q ss_pred --------------------------------------------------------------------------------
Q 007829 331 -------------------------------------------------------------------------------- 330 (588)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (588)
T Consensus 300 ~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (913)
T PRK13103 300 SAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQN 379 (913)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHH
Confidence
Q ss_pred -----ceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeC
Q 007829 331 -----RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCE 402 (588)
Q Consensus 331 -----~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~ 402 (588)
..+.+||+|......+|...+-...+.|....+ ....+ .....|.....|+..+++.+. +.+.||||-+.
T Consensus 380 fFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP-~~R~D-~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~ 457 (913)
T PRK13103 380 YFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKP-LARKD-FNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTA 457 (913)
T ss_pred HHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCC-ccccc-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 012234444333333333322222222111111 11111 122345556677777766554 47889999999
Q ss_pred ccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEEEEEcCccccCCCCC--------------------
Q 007829 403 NKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG-KKDVLVATDVASKGLDFP-------------------- 461 (588)
Q Consensus 403 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VLVaT~~~~~GlDip-------------------- 461 (588)
|+...+.++..|...|++.-++++.....+ .-+-. ..| ...|.|||++++||.||.
T Consensus 458 SVe~SE~ls~~L~~~gi~h~VLNAk~~~~E--A~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~ 534 (913)
T PRK13103 458 TIETSEHMSNLLKKEGIEHKVLNAKYHEKE--AEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQI 534 (913)
T ss_pred CHHHHHHHHHHHHHcCCcHHHhccccchhH--HHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHH
Confidence 999999999999999999888887644333 22222 455 456999999999999994
Q ss_pred -----------------CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCC
Q 007829 462 -----------------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 462 -----------------~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~ 503 (588)
+==|||--..+.|..---|-.||+||.|.+|.+-.|++-+++
T Consensus 535 ~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 535 AQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 122688888899999999999999999999999999988743
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=3.4e-20 Score=198.43 Aligned_cols=293 Identities=22% Similarity=0.291 Sum_probs=195.8
Q ss_pred CCCcHHHHHHHHHHh----cC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVL----SG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
..|+.+|..||..+. .| +.++++|.||+|||..++. ++..++.. +..+++|+|+-+++|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~--------~~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS--------GWVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc--------chhheeeEEechHHHHHHHHHH
Confidence 468999999998765 44 4599999999999987644 44444442 4578999999999999999999
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-----cCCCCCcceeeecCCccccc
Q 007829 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-----KMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-----~~~l~~~~~lIvDEah~l~~ 313 (588)
+..+.. .-.......+.... ..++|.|+|+.++...+... .+....+++||+|||||
T Consensus 235 f~~~~P--------~~~~~n~i~~~~~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR--- 296 (875)
T COG4096 235 FEDFLP--------FGTKMNKIEDKKGD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR--- 296 (875)
T ss_pred HHHhCC--------CccceeeeecccCC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh---
Confidence 999864 33232222221111 14799999999998887754 34455689999999999
Q ss_pred CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhc-cCCe--------------------EEE--ecCCCCcccc-
Q 007829 314 LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL-VKPV--------------------TVN--VGRAGAANLD- 369 (588)
Q Consensus 314 ~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l-~~p~--------------------~i~--~~~~~~~~~~- 369 (588)
|....++.|+.++....|.+ |||+...+..-.-.++ ..|+ .+. +...|.....
T Consensus 297 -gi~~~~~~I~dYFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ 373 (875)
T COG4096 297 -GIYSEWSSILDYFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAG 373 (875)
T ss_pred -hHHhhhHHHHHHHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCcc
Confidence 44567779999988776444 9998664332222222 2221 111 1111111000
Q ss_pred ---------eE----EEee---------ehh-hHHHHHHHHHHhhc--C---CCCEEEEeCccccHHHHHHHHHHc----
Q 007829 370 ---------VI----QEVE---------YVK-QEAKIVYLLECLQK--T---PPPVLIFCENKADVDDIHEYLLLK---- 417 (588)
Q Consensus 370 ---------v~----~~~~---------~~~-~~~k~~~ll~~l~~--~---~~~viIF~~s~~~~~~l~~~L~~~---- 417 (588)
.+ +.+. ... .+.....+.+.+.. . .+++||||.+..+|+.+.+.|...
T Consensus 374 serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~ 453 (875)
T COG4096 374 SEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY 453 (875)
T ss_pred chhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc
Confidence 00 0000 000 11222223333333 2 469999999999999999999765
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhc--CCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCC
Q 007829 418 -GVEAVAVHGGKDQEEREYAISSFKA--GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 418 -g~~~~~ihg~~~~~~r~~~~~~F~~--g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~ 488 (588)
|--+..+.|.-.+ -...++.|.. .-.+|.|+.+++..|+|+|.|.++|++..-.|..-|.||+||.-|.
T Consensus 454 ~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 454 NGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cCceEEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3335566665433 3445666665 3356899999999999999999999999999999999999999885
No 118
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=1.6e-19 Score=171.42 Aligned_cols=187 Identities=37% Similarity=0.545 Sum_probs=154.7
Q ss_pred CCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.++..|+++|.++++.++.. +++++.++||+|||.++..+++..+... ....+||++|++.++.|+...+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------~~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---------KGKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---------CCCcEEEEeCCHHHHHHHHHHH
Confidence 46788999999999999988 9999999999999999988888776442 2467999999999999999999
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCC-cEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHH
Q 007829 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGV-HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~-~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~ 318 (588)
..++... ........++......+..+..+. +++++||+.+.+.+.........++++|+||+|.+....+..
T Consensus 75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 75 KKLGPSL------GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred HHHhccC------CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHH
Confidence 9886532 234455555655555666666666 999999999999988877778889999999999999766778
Q ss_pred HHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecC
Q 007829 319 DIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362 (588)
Q Consensus 319 ~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~ 362 (588)
.+..++..++...+++++|||+++........+..+.+.+....
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88888888877889999999999999998888888777666544
No 119
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.84 E-value=3.1e-19 Score=188.64 Aligned_cols=319 Identities=21% Similarity=0.239 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
++-++|.-+++.+. .+-+.|+...+|.|||.- +++.+..+.+.. ..||. |||||+..|-+ |.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g-------~~gpH-LVVvPsSTleN-WlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG-------NPGPH-LVVVPSSTLEN-WLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC-------CCCCc-EEEecchhHHH-HHHHHH
Confidence 37899999998865 566789999999999943 555666665532 34554 99999988866 566799
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHH-cccCCCCCcceeeecCCcccccCC
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLA-KKKMNLDNCRYLTLDEADRLVDLG 315 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~l~~~l~-~~~~~l~~~~~lIvDEah~l~~~~ 315 (588)
+||. .+++..++|....+..++... .+.+|+|+|+.-...--. +..+.-.++.|+|+||+|.+.+++
T Consensus 469 kwCP--------sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~ 540 (941)
T KOG0389|consen 469 KWCP--------SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT 540 (941)
T ss_pred HhCC--------ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc
Confidence 9974 789999999987766655442 268999999854421100 112334567899999999999876
Q ss_pred CHHHHHHHHHhhhhcceEEEEeeccch-HHHH---------------------------------------------HHH
Q 007829 316 FEDDIREVFDHFKAQRQTLLFSATMPT-KIQN---------------------------------------------FAR 349 (588)
Q Consensus 316 ~~~~i~~i~~~~~~~~q~l~~SAT~~~-~i~~---------------------------------------------~~~ 349 (588)
- ..++.+++- + ..+.|++|+|+-. .+.+ -++
T Consensus 541 S-eRy~~LM~I-~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK 617 (941)
T KOG0389|consen 541 S-ERYKHLMSI-N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAK 617 (941)
T ss_pred h-HHHHHhccc-c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHH
Confidence 3 344444332 2 3345788888510 0000 000
Q ss_pred H-------------hcc----CCeEEE---e------------------------c--CCC---------CcccceEEEe
Q 007829 350 S-------------ALV----KPVTVN---V------------------------G--RAG---------AANLDVIQEV 374 (588)
Q Consensus 350 ~-------------~l~----~p~~i~---~------------------------~--~~~---------~~~~~v~~~~ 374 (588)
. .+. +.-.|. . . ..+ .++.....+.
T Consensus 618 ~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~ 697 (941)
T KOG0389|consen 618 TIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRS 697 (941)
T ss_pred HhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHH
Confidence 0 000 000000 0 0 000 0000000000
Q ss_pred ee---------------------------------------------------------hhhHH---HHHHHHHHhhcCC
Q 007829 375 EY---------------------------------------------------------VKQEA---KIVYLLECLQKTP 394 (588)
Q Consensus 375 ~~---------------------------------------------------------~~~~~---k~~~ll~~l~~~~ 394 (588)
.| +-... ++..|+..+++.+
T Consensus 698 ~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G 777 (941)
T KOG0389|consen 698 IYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG 777 (941)
T ss_pred hccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC
Confidence 00 00112 3344445555678
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--cEEEEEcCccccCCCCCCcceEEecCCC
Q 007829 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK--KDVLVATDVASKGLDFPDIQHVINYDMP 472 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~--~~VLVaT~~~~~GlDip~v~~VI~~~~p 472 (588)
.+||||..-....+.|..+|...++.+..+.|...-.+|..+++.|...+ .-+|++|-+.+.|||+..+++||.||+.
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d 857 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID 857 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC
Confidence 89999999999999999999999999999999999999999999999765 3468999999999999999999999999
Q ss_pred CChhHHHHHhcccCCCCCcc--EEEEEEcCCCCh
Q 007829 473 AEIENYVHRIGRTGRCGKTG--IATTFINKNQSE 504 (588)
Q Consensus 473 ~s~~~y~QriGRagR~g~~g--~~~~~~~~~~~~ 504 (588)
.+|-+-.|.-.||.|.|++. .++.||+++.-+
T Consensus 858 FNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred CCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 99999999999999999876 456678877443
No 120
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=3.4e-19 Score=191.48 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=113.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|..||.+.+..+-.+...+++|||.+|||.+.-..+=..+.. .....+|+++||++|++|....+...+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe---------sD~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE---------SDSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh---------cCCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 4788999999999999999999999999997755544333333 3567899999999999999988877652
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc---ccCCCCCcceeeecCCcccccCCCHHHHH
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK---KKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~---~~~~l~~~~~lIvDEah~l~~~~~~~~i~ 321 (588)
.- .-.+-..+.|.....-+.. .-.|+|+|+-|+-+-.+|.. ......+++|+|+||+|.+..+.-...+.
T Consensus 582 ~~-----t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~E 654 (1330)
T KOG0949|consen 582 TK-----TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWE 654 (1330)
T ss_pred cC-----ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHH
Confidence 11 0111222233221111111 12589999999999888876 45567889999999999998764334555
Q ss_pred HHHHhhhhcceEEEEeeccch
Q 007829 322 EVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~ 342 (588)
.++... .+.++++|||+.+
T Consensus 655 qll~li--~CP~L~LSATigN 673 (1330)
T KOG0949|consen 655 QLLLLI--PCPFLVLSATIGN 673 (1330)
T ss_pred HHHHhc--CCCeeEEecccCC
Confidence 555554 4669999999844
No 121
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1e-19 Score=184.41 Aligned_cols=337 Identities=19% Similarity=0.248 Sum_probs=236.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecC-CchH--hHHHHHHHHHHHHhhcccCCCC--------------------CCCCC
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFT-GSGK--TLVFVLPMIMIAMHEEMMMPIV--------------------PGEGP 220 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~T-GsGK--Tl~~~lp~l~~~~~~~~~~~~~--------------------~~~~~ 220 (588)
..+|+.|.+.+..+.+.+|++..-.| +.|+ +-+|++.++++++......-.. +-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 56799999999999999999876333 3444 6789999999988753221000 11268
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccc-----cCCCCc--------------------eEEEEEcCcch--------HH
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRD-----AGYPDL--------------------RTLLCIGGVDM--------RS 267 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~-----~~~~~i--------------------~~~~~~gg~~~--------~~ 267 (588)
+||||||+|+-|..+...+..++....+ ++...+ --.+..|.++. ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999999988554432 010000 00011111110 00
Q ss_pred HHHHH---hcCCcEEEeChHHHHHHHHcc------cCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhc--------
Q 007829 268 QLEVV---KRGVHIVVATPGRLKDMLAKK------KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-------- 330 (588)
Q Consensus 268 ~~~~l---~~~~~IvV~Tp~~l~~~l~~~------~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~-------- 330 (588)
..-.+ ...+||+||+|-.|..++... .-.++++.++|||.||.|+..+| +.+..|+.+++..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 00001 114899999999998888732 23588999999999999998877 6677787776432
Q ss_pred ----------------ceEEEEeeccchHHHHHHHHhccCCe---EEE-e---cCCCCcccceEEEeeehh-------hH
Q 007829 331 ----------------RQTLLFSATMPTKIQNFARSALVKPV---TVN-V---GRAGAANLDVIQEVEYVK-------QE 380 (588)
Q Consensus 331 ----------------~q~l~~SAT~~~~i~~~~~~~l~~p~---~i~-~---~~~~~~~~~v~~~~~~~~-------~~ 380 (588)
+|+++||+-..+.+..+...++.+.. ... + +..+.....+.|.+..+. .+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 58999999988887777766665431 111 0 111112222333332221 34
Q ss_pred HHHHHHHHHhh-----cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007829 381 AKIVYLLECLQ-----KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 381 ~k~~~ll~~l~-----~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 455 (588)
.++.++...+. .....+|||.++.-+..++.+++.+.++.++.+|...++..-.++.+.|..|...||+.|..+.
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 56666665432 2345689999999999999999999999999999999999999999999999999999999987
Q ss_pred --cCCCCCCcceEEecCCCCChhHHHH---HhcccCCCC----CccEEEEEEcCC
Q 007829 456 --KGLDFPDIQHVINYDMPAEIENYVH---RIGRTGRCG----KTGIATTFINKN 501 (588)
Q Consensus 456 --~GlDip~v~~VI~~~~p~s~~~y~Q---riGRagR~g----~~g~~~~~~~~~ 501 (588)
+..++.+|+.||+|.+|.+|..|.. +++|+.-.| ..-.|.+++++-
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 8899999999999999999998865 555653323 335778888876
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=8.5e-19 Score=190.68 Aligned_cols=314 Identities=21% Similarity=0.273 Sum_probs=218.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|. .|+++|.-+--.+..|+ |.-+.||-|||+++.+|++..++. |..|-||+.+--||..=.+.+..
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~-----------GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT-----------GKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc-----------CCceEEEecchhhhhhhHHHHHH
Confidence 44 78999998887777775 899999999999999999766544 66789999999999998888888
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-c
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~-~ 313 (588)
+...+ ++.++++..+.+..+..... .|+|+++|...| .|.|..+ ......+.|.||||+|.++ |
T Consensus 142 vy~fL------GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID 213 (925)
T PRK12903 142 VFNFL------GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID 213 (925)
T ss_pred HHHHh------CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeec
Confidence 88877 99999998876665544433 489999998876 3445432 2235678899999999875 1
Q ss_pred CC---------------CHHHHHHHHHhhhh-------------------------------------------------
Q 007829 314 LG---------------FEDDIREVFDHFKA------------------------------------------------- 329 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~------------------------------------------------- 329 (588)
.. +...+..+...+..
T Consensus 214 EArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A 293 (925)
T PRK12903 214 EAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRA 293 (925)
T ss_pred ccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHH
Confidence 10 11111111111110
Q ss_pred -------------------------------------------------------------------cceEEEEeeccch
Q 007829 330 -------------------------------------------------------------------QRQTLLFSATMPT 342 (588)
Q Consensus 330 -------------------------------------------------------------------~~q~l~~SAT~~~ 342 (588)
...+.+||+|...
T Consensus 294 ~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~t 373 (925)
T PRK12903 294 HKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKT 373 (925)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 0123345555544
Q ss_pred HHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCC
Q 007829 343 KIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGV 419 (588)
Q Consensus 343 ~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~ 419 (588)
.-.+|...+-...+.|....+ ....+ .....+.....|+..+++.+. +.+.||||.|.|+..++.+++.|...|+
T Consensus 374 e~~Ef~~iY~l~Vv~IPTnkP-~~R~D-~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi 451 (925)
T PRK12903 374 EEQEFIDIYNMRVNVVPTNKP-VIRKD-EPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANI 451 (925)
T ss_pred HHHHHHHHhCCCEEECCCCCC-eeeee-CCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 444444333322222211111 11111 111234456677777766554 4688999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcC-CcEEEEEcCccccCCCCCCcc--------eEEecCCCCChhHHHHHhcccCCCCC
Q 007829 420 EAVAVHGGKDQEEREYAISSFKAG-KKDVLVATDVASKGLDFPDIQ--------HVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 420 ~~~~ihg~~~~~~r~~~~~~F~~g-~~~VLVaT~~~~~GlDip~v~--------~VI~~~~p~s~~~y~QriGRagR~g~ 490 (588)
+..++++.-. +++..+-. ..| ...|.|||++++||.||.--. |||....|.|..---|..||+||.|.
T Consensus 452 ~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 452 PHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred Cceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 9999998633 44433332 456 467999999999999996432 89999999998888899999999999
Q ss_pred ccEEEEEEcCCC
Q 007829 491 TGIATTFINKNQ 502 (588)
Q Consensus 491 ~g~~~~~~~~~~ 502 (588)
+|.+-.|++-.+
T Consensus 529 pGss~f~lSLeD 540 (925)
T PRK12903 529 VGESRFFISLDD 540 (925)
T ss_pred CCcceEEEecch
Confidence 999999998774
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.1e-19 Score=182.95 Aligned_cols=328 Identities=13% Similarity=0.094 Sum_probs=230.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 156 KKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 156 ~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
..+..+.-.....+|.++|..+-.|+++++...|.+||++++.+......... .....+++.|+.++++..
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---------~~s~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---------HATNSLLPSEMVEHLRNG 347 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---------cccceecchhHHHHhhcc
Confidence 34444445677899999999999999999999999999999999887765442 344579999999998875
Q ss_pred HHHHHHHhhcccccCCCCceE--EEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCC----CcceeeecCCc
Q 007829 236 YEVVEQFLTPMRDAGYPDLRT--LLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLD----NCRYLTLDEAD 309 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~--~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~----~~~~lIvDEah 309 (588)
.+.+.-....+ |..+. +-.+.+....+...-.+.+.+++++.|..+......+..+.+ ...++++||+|
T Consensus 348 ~~~~~V~~~~I-----~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 348 SKGQVVHVEVI-----KARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred CCceEEEEEeh-----hhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 54333222211 12222 222334444555556677899999999988777665554433 34679999999
Q ss_pred ccccCCCHH----HHHHHHHhh-----hhcceEEEEeeccchHHHHHHHHhccCCeEEE-ecCCCCcccceEEEeeeh--
Q 007829 310 RLVDLGFED----DIREVFDHF-----KAQRQTLLFSATMPTKIQNFARSALVKPVTVN-VGRAGAANLDVIQEVEYV-- 377 (588)
Q Consensus 310 ~l~~~~~~~----~i~~i~~~~-----~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~-~~~~~~~~~~v~~~~~~~-- 377 (588)
.++.. |.. +++.+++.+ +...|++-.|||+...++.....+-.+.+.+. ....... -...+.+.
T Consensus 423 ~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~---~K~~V~WNP~ 498 (1034)
T KOG4150|consen 423 LYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSS---EKLFVLWNPS 498 (1034)
T ss_pred eeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCc---cceEEEeCCC
Confidence 98754 333 334443333 23568899999998887665554444443322 2221111 11111111
Q ss_pred -------hhHHHHH---HHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc----CC----cEEEEeCCCCHHHHHHHHHH
Q 007829 378 -------KQEAKIV---YLLECLQKTPPPVLIFCENKADVDDIHEYLLLK----GV----EAVAVHGGKDQEEREYAISS 439 (588)
Q Consensus 378 -------~~~~k~~---~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~----g~----~~~~ihg~~~~~~r~~~~~~ 439 (588)
..+.++. .++..+...+-++|.||++++.|+.+....+.. +. .+..|.||...++|..+...
T Consensus 499 ~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~ 578 (1034)
T KOG4150|consen 499 APPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESD 578 (1034)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHH
Confidence 1122222 233334446779999999999999877655432 22 35678999999999999999
Q ss_pred HhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 440 F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+-.|+..-+|||++++.|||+.+++.|++.++|.|+.++.|+.|||||.++...++.+....
T Consensus 579 ~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 579 LFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999998887776554
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=5.7e-18 Score=172.61 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=123.7
Q ss_pred ceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccH
Q 007829 331 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADV 407 (588)
Q Consensus 331 ~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~ 407 (588)
.|+|++|||+.+.-....... -+.-.+..-+...+.+.-+ +....+..|+..+. +.+.++||-+-|++.+
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~---vveQiIRPTGLlDP~ievR----p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGN---VVEQIIRPTGLLDPEIEVR----PTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhccCc---eeEEeecCCCCCCCceeee----cCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 599999999987533322211 1111122222222222211 22223334444433 2457999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCC-----CChhHHHHHh
Q 007829 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP-----AEIENYVHRI 482 (588)
Q Consensus 408 ~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p-----~s~~~y~Qri 482 (588)
+.|.+||...|+++..+|++.+.-+|.++++.++.|.++|||.-+.+-+|+|+|.|.+|.++|.. .|..+.+|-+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988854 5899999999
Q ss_pred cccCCCCCccEEEEEEcCC
Q 007829 483 GRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 483 GRagR~g~~g~~~~~~~~~ 501 (588)
|||+|. -.|.++.+.+.-
T Consensus 540 GRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 540 GRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHhhc-cCCeEEEEchhh
Confidence 999996 678999888654
No 125
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.82 E-value=3.2e-18 Score=185.88 Aligned_cols=321 Identities=16% Similarity=0.186 Sum_probs=203.8
Q ss_pred CCcHHHHHHHHHHh---cC-------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 165 QPTPIQVQGLPVVL---SG-------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 165 ~p~~~Q~~~i~~il---~g-------~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
.++|+|++++..+. .| ..+|+.-.+|+|||+.. ++.+..++... |....--.++|||||. .|+.-
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~---P~~~~~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQF---PQAKPLINKPLVVAPS-SLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhC---cCccccccccEEEccH-HHHHH
Confidence 57999999999875 23 25778889999999774 44444444431 1111122678999997 78888
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcch--HHHHHHH-----hcCCcEEEeChHHHHHHHHcccCCCCCcceeeecC
Q 007829 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM--RSQLEVV-----KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--~~~~~~l-----~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDE 307 (588)
|.++|.+|...- .+....++|..+. ......+ .-..-|++.+++.+.+... .+....+++||+||
T Consensus 313 WkkEF~KWl~~~------~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDE 384 (776)
T KOG0390|consen 313 WKKEFGKWLGNH------RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDE 384 (776)
T ss_pred HHHHHHHhcccc------ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECC
Confidence 999999996531 5666666666553 0111111 1134688899988875544 34567889999999
Q ss_pred CcccccCCCHHHHHHHHHhhhhcceEEEEeeccch-H-------------------------------------------
Q 007829 308 ADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT-K------------------------------------------- 343 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~-~------------------------------------------- 343 (588)
.|++.+.. ..+...+..+...+ -|++|+|+-. .
T Consensus 385 GHrlkN~~--s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 385 GHRLKNSD--SLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred CCCccchh--hHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhh
Confidence 99998754 66777777776555 5777888610 0
Q ss_pred --------HHHHHHHhccCC--------------eEEEecCCC-------------------------------------
Q 007829 344 --------IQNFARSALVKP--------------VTVNVGRAG------------------------------------- 364 (588)
Q Consensus 344 --------i~~~~~~~l~~p--------------~~i~~~~~~------------------------------------- 364 (588)
+..+...++... .++......
T Consensus 462 ~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390|consen 462 EREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPS 541 (776)
T ss_pred hhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHH
Confidence 111111111000 000000000
Q ss_pred -------------CcccceEEE-------eeehhhHHHHHHHHHHhhcCCCCEEEEe----CccccHHHHHHHHHHcCCc
Q 007829 365 -------------AANLDVIQE-------VEYVKQEAKIVYLLECLQKTPPPVLIFC----ENKADVDDIHEYLLLKGVE 420 (588)
Q Consensus 365 -------------~~~~~v~~~-------~~~~~~~~k~~~ll~~l~~~~~~viIF~----~s~~~~~~l~~~L~~~g~~ 420 (588)
..+...... ..-.....++..|...+.....++++|+ |.+...+.+...++.+|+.
T Consensus 542 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 542 LLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred hhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 000000000 0000012334444444433333444444 4444555555556667999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCC---cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEE-
Q 007829 421 AVAVHGGKDQEEREYAISSFKAGK---KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATT- 496 (588)
Q Consensus 421 ~~~ihg~~~~~~r~~~~~~F~~g~---~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~- 496 (588)
+..+||.++..+|..+++.|++.. .-+|.+|-+.+.||++-+++.||.||++|||+.-.|.++|+.|.||+..|++
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999653 3356777888999999999999999999999999999999999999887655
Q ss_pred -EEcCC
Q 007829 497 -FINKN 501 (588)
Q Consensus 497 -~~~~~ 501 (588)
|+..+
T Consensus 702 rLlatG 707 (776)
T KOG0390|consen 702 RLLATG 707 (776)
T ss_pred EeecCC
Confidence 45554
No 126
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.81 E-value=3.2e-18 Score=176.89 Aligned_cols=283 Identities=20% Similarity=0.259 Sum_probs=209.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhc-ccccCCCCceE------------EEEEcCcchHHHHHHHhc----------
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTP-MRDAGYPDLRT------------LLCIGGVDMRSQLEVVKR---------- 274 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~-~~~~~~~~i~~------------~~~~gg~~~~~~~~~l~~---------- 274 (588)
..|+||||+|+|..|.++.+.+.+++.. ....+...+.- ..-.......+.+..+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4799999999999999999999988765 11100000000 000000111122222211
Q ss_pred ---------------CCcEEEeChHHHHHHHHc------ccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhh----
Q 007829 275 ---------------GVHIVVATPGRLKDMLAK------KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA---- 329 (588)
Q Consensus 275 ---------------~~~IvV~Tp~~l~~~l~~------~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~---- 329 (588)
++|||||+|-.|...+.. ....|+++.++|+|.||.|+..+| +.+..++.+++.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCC
Confidence 489999999999888874 234699999999999999998776 667777766642
Q ss_pred --------------------cceEEEEeeccchHHHHHHHHhccCC---eEEEecCC-----CCcccceEEEeeehh---
Q 007829 330 --------------------QRQTLLFSATMPTKIQNFARSALVKP---VTVNVGRA-----GAANLDVIQEVEYVK--- 378 (588)
Q Consensus 330 --------------------~~q~l~~SAT~~~~i~~~~~~~l~~p---~~i~~~~~-----~~~~~~v~~~~~~~~--- 378 (588)
-+|+|++|+...+.+..+....+.+. +.+..... ......+.|.+..++
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 26999999999999999998866554 22221111 234455666665543
Q ss_pred ----hHHHHHHHHHH----hh--cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007829 379 ----QEAKIVYLLEC----LQ--KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 379 ----~~~k~~~ll~~----l~--~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 448 (588)
.+.++.++.+. +. ...+.+|||++|.-+...|.++|...++.++.+|...++.+-.++...|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 34555555442 23 245689999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccc--cCCCCCCcceEEecCCCCChhHHHHHhcccCCCCC------ccEEEEEEcCC
Q 007829 449 VATDVAS--KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK------TGIATTFINKN 501 (588)
Q Consensus 449 VaT~~~~--~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~------~g~~~~~~~~~ 501 (588)
+.|..+. +...+.++++||+|++|..+..|-..+.-.+.... ...+.++++.-
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 9999887 88999999999999999999999988866555433 57888898876
No 127
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.81 E-value=5.5e-18 Score=177.79 Aligned_cols=303 Identities=20% Similarity=0.240 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh-c
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT-P 245 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~-~ 245 (588)
+.+-.+.+..+.+.+-+|++|+||||||. ++| +.+.+..+ .....+.+.-|.|--|.-++++...-.. .
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~------~~~g~I~~TQPRRVAavslA~RVAeE~~~~ 122 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGF------ASSGKIACTQPRRVAAVSLAKRVAEEMGCQ 122 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhccc------ccCCcEEeecCchHHHHHHHHHHHHHhCCC
Confidence 34455667777788999999999999994 455 33333322 1223377888999888877766654322 2
Q ss_pred ccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHH
Q 007829 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD 325 (588)
Q Consensus 246 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~ 325 (588)
+ +-.|+..+--.+... ....|.+.|-|.|+..+..... |+.+++||+||||.=.=. .+-+..+++
T Consensus 123 l------G~~VGY~IRFed~ts------~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~--TDiLlGlLK 187 (674)
T KOG0922|consen 123 L------GEEVGYTIRFEDSTS------KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLH--TDILLGLLK 187 (674)
T ss_pred c------CceeeeEEEecccCC------CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhH--HHHHHHHHH
Confidence 2 333443332111111 1268999999999877765544 899999999999973211 123333333
Q ss_pred hh---hhcceEEEEeeccchHHHHHHHHhccC-CeEEEecCCCCcccceEEEeeehhhHHHH----HHHHHHh-hcCCCC
Q 007829 326 HF---KAQRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRAGAANLDVIQEVEYVKQEAKI----VYLLECL-QKTPPP 396 (588)
Q Consensus 326 ~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~~~~~~v~~~~~~~~~~~k~----~~ll~~l-~~~~~~ 396 (588)
.+ +++-++|++|||+... ....++.+ |+....|+. ..+...+...+..+-+ ..++++. .+.++-
T Consensus 188 ki~~~R~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GD 260 (674)
T KOG0922|consen 188 KILKKRPDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRT----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGD 260 (674)
T ss_pred HHHhcCCCceEEEEeeeecHH---HHHHHhcCCceEeecCCC----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCC
Confidence 33 2345799999999743 34445544 544333332 2222222222222222 2222222 245668
Q ss_pred EEEEeCccccHHHHHHHHHHc----C--C--cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe
Q 007829 397 VLIFCENKADVDDIHEYLLLK----G--V--EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 397 viIF~~s~~~~~~l~~~L~~~----g--~--~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~ 468 (588)
+|||....++++.+.+.|.+. + . -+..+||.++.++..++.+.--.|..+|++||++++..+.|+++..||.
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 999999999999999998765 1 1 2356899999999999988878899999999999999999999999996
Q ss_pred cCC------------------CCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 469 YDM------------------PAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 469 ~~~------------------p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
-++ |-|-.+-.||.|||||.| +|.|+-++++++
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHH
Confidence 654 347788899999999985 899999998763
No 128
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=3.1e-18 Score=187.84 Aligned_cols=333 Identities=20% Similarity=0.293 Sum_probs=219.5
Q ss_pred CCcHHHHHHHHHHh---c-CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVL---S-GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il---~-g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.++.||++++..+. + +=+-|+|..+|-|||+-.+--+..-..+.+. ....-.....|||||+ .|+--|..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--ESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--cchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 34889999998764 2 3488999999999998765444433333210 0001122337999997 78888999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHH
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i 320 (588)
+|+. -+++..+.|+-..+...+.-.+.++|+|++++.+.+-+. .+.-..+-|+|+||.|-|.+.. ..+
T Consensus 1052 kf~p--------fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~k--tkl 1119 (1549)
T KOG0392|consen 1052 KFFP--------FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSK--TKL 1119 (1549)
T ss_pred Hhcc--------hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchH--HHH
Confidence 9974 567788888765555555555568999999988753222 1112345699999999998743 566
Q ss_pred HHHHHhhhhcceEEEEeeccc-hHHHH-----------------------------------------------------
Q 007829 321 REVFDHFKAQRQTLLFSATMP-TKIQN----------------------------------------------------- 346 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT~~-~~i~~----------------------------------------------------- 346 (588)
.+..+.+..+. .+.+|+|+- +.+.+
T Consensus 1120 ~kavkqL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKq 1198 (1549)
T KOG0392|consen 1120 TKAVKQLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQ 1198 (1549)
T ss_pred HHHHHHHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHH
Confidence 66667776665 466788851 00000
Q ss_pred ---------------------------------------HHHHhccCCeEEEecCCCCcccc-----eEEEeee------
Q 007829 347 ---------------------------------------FARSALVKPVTVNVGRAGAANLD-----VIQEVEY------ 376 (588)
Q Consensus 347 ---------------------------------------~~~~~l~~p~~i~~~~~~~~~~~-----v~~~~~~------ 376 (588)
|.++ ...-+.-.+. .+..... +.|...|
T Consensus 1199 VLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~-~k~~~~~~~d-~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1199 VLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK-AKQCVSSQID-GGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH-hccccccccc-cchhccCcchHHHHHHHHHHHHhcC
Confidence 0000 0000000000 0000000 0111111
Q ss_pred -----------------------------hhhHHHHHHHHHHhhc-----------------CCCCEEEEeCccccHHHH
Q 007829 377 -----------------------------VKQEAKIVYLLECLQK-----------------TPPPVLIFCENKADVDDI 410 (588)
Q Consensus 377 -----------------------------~~~~~k~~~ll~~l~~-----------------~~~~viIF~~s~~~~~~l 410 (588)
+....|+..|-+.|.+ .++++||||.-+...+.+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 0112333334333321 246899999999999999
Q ss_pred HHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcC-CcEEE-EEcCccccCCCCCCcceEEecCCCCChhHHHHHhccc
Q 007829 411 HEYLLLKG---VEAVAVHGGKDQEEREYAISSFKAG-KKDVL-VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485 (588)
Q Consensus 411 ~~~L~~~g---~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VL-VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRa 485 (588)
.+-|.+.. +....+.|..++.+|.++.++|+++ .++|| ++|-+.+.|+|+.++++||+++-.|||-.-.|.+.||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 99887653 4455789999999999999999999 78876 5678999999999999999999999999999999999
Q ss_pred CCCCCccEE--EEEEcCCCChhHHHHHHHHHH
Q 007829 486 GRCGKTGIA--TTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 486 gR~g~~g~~--~~~~~~~~~~~~~~~l~~~l~ 515 (588)
.|.|++.++ +-||+.+.-+.....|.++-.
T Consensus 1437 HRIGQKrvVNVyRlItrGTLEEKVMgLQkFKm 1468 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVYRLITRGTLEEKVMGLQKFKM 1468 (1549)
T ss_pred HhhcCceeeeeeeehhcccHHHHHhhHHHHhh
Confidence 999998865 556777755555555555543
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=1.1e-17 Score=183.19 Aligned_cols=274 Identities=22% Similarity=0.218 Sum_probs=180.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|.-+.-.+.. ..|..+.||.|||+++.+|++..++ .|..|.||+++..||.+-++.+..
T Consensus 74 G~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL-----------~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 74 GL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNAL-----------TGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred CC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHh-----------cCCceEEEeCCHHHHHHHHHHHHH
Confidence 54 588888887665554 4699999999999999999975544 366799999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcc------cCCCCCcceeeecCCcccc-c
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK-DMLAKK------KMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~-~~l~~~------~~~l~~~~~lIvDEah~l~-~ 313 (588)
+...+ ++.++++.++.+..+..... .++|+++|...|- |.|..+ ......+.+.||||+|.++ |
T Consensus 140 vy~~L------GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLID 211 (870)
T CHL00122 140 IYRFL------GLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILID 211 (870)
T ss_pred HHHHc------CCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheec
Confidence 98887 99999998887776654443 3799999986442 333322 2235678899999999875 1
Q ss_pred CC---------------CHHHHHHHHHhhhh-------------------------------------------------
Q 007829 314 LG---------------FEDDIREVFDHFKA------------------------------------------------- 329 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~------------------------------------------------- 329 (588)
.. ....+..+...+..
T Consensus 212 eArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A 291 (870)
T CHL00122 212 EARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKA 291 (870)
T ss_pred cCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHH
Confidence 10 00000111111100
Q ss_pred -------------------------------------------------------------------cceEEEEeeccch
Q 007829 330 -------------------------------------------------------------------QRQTLLFSATMPT 342 (588)
Q Consensus 330 -------------------------------------------------------------------~~q~l~~SAT~~~ 342 (588)
...+.+||+|...
T Consensus 292 ~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~t 371 (870)
T CHL00122 292 KELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKT 371 (870)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHH
Confidence 0124456666654
Q ss_pred HHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcCC
Q 007829 343 KIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKGV 419 (588)
Q Consensus 343 ~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g~ 419 (588)
.-.+|...+-...+.|.... +....+. ....+.....|+..+++.+ .+.+.||||-|.|+...+.++..|...|+
T Consensus 372 e~~Ef~~iY~l~vv~IPtnk-p~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 372 EELEFEKIYNLEVVCIPTHR-PMLRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHHhCCCEEECCCCC-CccceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 44444333332222221111 1111111 2233445566766666554 34688999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHH-HHHHHHhcC-CcEEEEEcCccccCCCCC
Q 007829 420 EAVAVHGGKDQEERE-YAISSFKAG-KKDVLVATDVASKGLDFP 461 (588)
Q Consensus 420 ~~~~ihg~~~~~~r~-~~~~~F~~g-~~~VLVaT~~~~~GlDip 461 (588)
+..++++.-.+.+++ .++.. .| ...|-|||++++||.||.
T Consensus 450 ~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 450 PHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 999999964222232 23332 45 456999999999999973
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.78 E-value=4.5e-18 Score=171.27 Aligned_cols=313 Identities=20% Similarity=0.272 Sum_probs=210.3
Q ss_pred CCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+..+.|+|.+++...+ .|..+++...+|.|||+-++..+ ..+.. +.| .|||||. .|--.|.+.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA--~yyra---------Ewp-lliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA--RYYRA---------EWP-LLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH--HHHhh---------cCc-EEEEecH-HHhHHHHHHHHH
Confidence 3456899999999887 67889999999999997765433 33332 233 6999998 455678888999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHH
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~ 321 (588)
|+..+ ..+.++.++.+... .+.....|.|.+++.+..+- +.+.-..+++||+||.|.+.+.. ....+
T Consensus 263 ~lps~-------~pi~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~K 329 (689)
T KOG1000|consen 263 FLPSI-------HPIFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTK 329 (689)
T ss_pred hcccc-------cceEEEecccCCcc---ccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhh
Confidence 98654 22444555433321 12223579999998874332 22333457899999999998753 24466
Q ss_pred HHHHhhhhcceEEEEeeccc----h---------------HHHHHHHHhcc-CCeEEEecCCCCccc-------------
Q 007829 322 EVFDHFKAQRQTLLFSATMP----T---------------KIQNFARSALV-KPVTVNVGRAGAANL------------- 368 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~----~---------------~i~~~~~~~l~-~p~~i~~~~~~~~~~------------- 368 (588)
.++..+....++|++|+|+. . ...+|+..+.. ..+.+.....+..+.
T Consensus 330 a~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMI 409 (689)
T KOG1000|consen 330 AATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMI 409 (689)
T ss_pred hhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHH
Confidence 66666666778999999972 1 11122222221 111111111111000
Q ss_pred ------------ceEEEeeeh--------------------------------------hhHHHHHHHHHHhhc------
Q 007829 369 ------------DVIQEVEYV--------------------------------------KQEAKIVYLLECLQK------ 392 (588)
Q Consensus 369 ------------~v~~~~~~~--------------------------------------~~~~k~~~ll~~l~~------ 392 (588)
.-.+.+.++ ....|+..+.+++..
T Consensus 410 RRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d 489 (689)
T KOG1000|consen 410 RRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPD 489 (689)
T ss_pred HHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCccccc
Confidence 001111110 001222233333332
Q ss_pred -CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEE-EEEcCccccCCCCCCcceEEec
Q 007829 393 -TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG-KKDV-LVATDVASKGLDFPDIQHVINY 469 (588)
Q Consensus 393 -~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g-~~~V-LVaT~~~~~GlDip~v~~VI~~ 469 (588)
.+.+++|||......+.+...+..+++....|.|..+..+|....+.|... ++.| +++-.+++.|+++...+.||+.
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 356899999999999999999999999999999999999999999999955 4555 5566788999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCccEEE--EEEcCC
Q 007829 470 DMPAEIENYVHRIGRTGRCGKTGIAT--TFINKN 501 (588)
Q Consensus 470 ~~p~s~~~y~QriGRagR~g~~g~~~--~~~~~~ 501 (588)
.++|++.-.+|.-.|+.|.|++..+. .|+.++
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEEEEecC
Confidence 99999999999999999999987553 344444
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=2.9e-16 Score=178.09 Aligned_cols=316 Identities=18% Similarity=0.249 Sum_probs=189.5
Q ss_pred CCCCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH-
Q 007829 162 GIVQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY- 236 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~- 236 (588)
|| .+++-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|+.|+.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~~ 309 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIMA 309 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHHH
Confidence 44 68999999555543 678899999999999999999988642 3578999999999999994
Q ss_pred HHHHHHhhcccccCCCCceEEEEEcCcch------HH-----------------------------------------HH
Q 007829 237 EVVEQFLTPMRDAGYPDLRTLLCIGGVDM------RS-----------------------------------------QL 269 (588)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~~gg~~~------~~-----------------------------------------~~ 269 (588)
+.+..+...+ ++++.++.|+.+. .. -+
T Consensus 310 ~~i~~l~~~~------~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w 383 (820)
T PRK07246 310 EEVKAIQEVF------HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYF 383 (820)
T ss_pred HHHHHHHHhc------CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHH
Confidence 6666665443 4555555554321 00 00
Q ss_pred HH------------------------HhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC-----CH---
Q 007829 270 EV------------------------VKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-----FE--- 317 (588)
Q Consensus 270 ~~------------------------l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~-----~~--- 317 (588)
.. -...++|||++-.-|...+.... .+...+++||||||++.+.. ..
T Consensus 384 ~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~ 462 (820)
T PRK07246 384 DQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNI 462 (820)
T ss_pred HHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecH
Confidence 00 01138899999877766554433 25678999999999986421 00
Q ss_pred ----HHH-------------------------------------------HH---HHHhh--------------------
Q 007829 318 ----DDI-------------------------------------------RE---VFDHF-------------------- 327 (588)
Q Consensus 318 ----~~i-------------------------------------------~~---i~~~~-------------------- 327 (588)
..+ .. .+..+
T Consensus 463 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W 542 (820)
T PRK07246 463 TSFLQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYW 542 (820)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 000 00 00000
Q ss_pred ----------------------------hhcceEEEEeeccc--hHHHHHHHHhcc-CCeEEEecCCCCcccceE-E-Ee
Q 007829 328 ----------------------------KAQRQTLLFSATMP--TKIQNFARSALV-KPVTVNVGRAGAANLDVI-Q-EV 374 (588)
Q Consensus 328 ----------------------------~~~~q~l~~SAT~~--~~i~~~~~~~l~-~p~~i~~~~~~~~~~~v~-~-~~ 374 (588)
+....+|++|||++ +.. .+...+-. ......+......+..+. . .+
T Consensus 543 ~e~~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~ 621 (820)
T PRK07246 543 LESEKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIEKDKKQDQLVVVDQDM 621 (820)
T ss_pred EEecCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCCCChHHccEEEeCCCC
Confidence 00124688899985 222 23322211 111111110000000000 0 00
Q ss_pred ee---hhhHH---HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007829 375 EY---VKQEA---KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 375 ~~---~~~~~---k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 448 (588)
.. ...+. .+...+..+...+++++|+++|....+.+++.|....+.+ ...|... .+..++++|+++...||
T Consensus 622 p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vL 698 (820)
T PRK07246 622 PLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQIL 698 (820)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEE
Confidence 00 11111 2222222233567899999999999999999997665544 4445222 25668999999989999
Q ss_pred EEcCccccCCCCCC--cceEEecCCCC----C--------------------------hhHHHHHhcccCCCCCccEEEE
Q 007829 449 VATDVASKGLDFPD--IQHVINYDMPA----E--------------------------IENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 449 VaT~~~~~GlDip~--v~~VI~~~~p~----s--------------------------~~~y~QriGRagR~g~~g~~~~ 496 (588)
++|+.+.+|+|+|+ ...||...+|- + +..+.|.+||.-|....--+++
T Consensus 699 lG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 699 LGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred EecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999974 55567777662 1 2235688999999854333455
Q ss_pred EEcCC
Q 007829 497 FINKN 501 (588)
Q Consensus 497 ~~~~~ 501 (588)
+++..
T Consensus 779 ilD~R 783 (820)
T PRK07246 779 ILDRR 783 (820)
T ss_pred EECCc
Confidence 55443
No 132
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.1e-16 Score=175.00 Aligned_cols=273 Identities=23% Similarity=0.257 Sum_probs=180.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+++|.-+--.+..|+ |..+.||-|||+++.+|++..++. |..|.||+++..||..-.+.+..+..
T Consensus 85 r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~-----------GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT-----------GKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc-----------CCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 68888888777776665 999999999999999999876654 66799999999999999999999988
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-----HHHHHc--ccCCCCCcceeeecCCcccc-cCC-
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-----KDMLAK--KKMNLDNCRYLTLDEADRLV-DLG- 315 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-----~~~l~~--~~~~l~~~~~lIvDEah~l~-~~~- 315 (588)
.+ ++.++++.++.+..+... .-.++|+++|+..| .|.+.. .......+.+.||||+|.++ |..
T Consensus 152 ~L------GLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEAr 223 (939)
T PRK12902 152 FL------GLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEAR 223 (939)
T ss_pred Hh------CCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCC
Confidence 77 999999988776654433 33589999999887 444432 23446788999999999875 111
Q ss_pred --------------CHHHHHHHHHhhhh--------------c-------------------------------------
Q 007829 316 --------------FEDDIREVFDHFKA--------------Q------------------------------------- 330 (588)
Q Consensus 316 --------------~~~~i~~i~~~~~~--------------~------------------------------------- 330 (588)
.......+...+.. .
T Consensus 224 TPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~A 303 (939)
T PRK12902 224 TPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNA 303 (939)
T ss_pred CcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHH
Confidence 00111111111111 0
Q ss_pred -----------------------------------------------------------------------ceEEEEeec
Q 007829 331 -----------------------------------------------------------------------RQTLLFSAT 339 (588)
Q Consensus 331 -----------------------------------------------------------------------~q~l~~SAT 339 (588)
.++.+||+|
T Consensus 304 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGT 383 (939)
T PRK12902 304 LKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGT 383 (939)
T ss_pred HHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 122344444
Q ss_pred cchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHH
Q 007829 340 MPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLL 416 (588)
Q Consensus 340 ~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~ 416 (588)
....-.+|...+-...+.+....+ ....+ .....+.....|+..+++.+. +.+.||||-+.|+...+.++..|..
T Consensus 384 a~te~~Ef~~iY~l~Vv~IPTnkP-~~R~d-~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~ 461 (939)
T PRK12902 384 AKTEEVEFEKTYKLEVTVIPTNRP-RRRQD-WPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQE 461 (939)
T ss_pred CHHHHHHHHHHhCCcEEEcCCCCC-eeeec-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHH
Confidence 433333333333222222111111 11111 112234455677777765553 4788999999999999999999999
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCC-cEEEEEcCccccCCCCC
Q 007829 417 KGVEAVAVHGGKDQEEREYAISSFKAGK-KDVLVATDVASKGLDFP 461 (588)
Q Consensus 417 ~g~~~~~ihg~~~~~~r~~~~~~F~~g~-~~VLVaT~~~~~GlDip 461 (588)
.|++..++++.-...+++..+-. ..|+ ..|-|||++++||-||.
T Consensus 462 ~gi~h~vLNAk~~~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 462 QGIPHNLLNAKPENVEREAEIVA-QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred cCCchheeeCCCcchHhHHHHHH-hcCCCCcEEEeccCCCCCcCEe
Confidence 99999999996333233322222 2454 56899999999999974
No 133
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=3.4e-17 Score=170.05 Aligned_cols=304 Identities=20% Similarity=0.229 Sum_probs=202.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh-
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL- 243 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~- 243 (588)
.-+++-.+.+.++...+-+|+.|.|||||| -++|- .+.+... ...|.++=+--|.|-.|..+..++.+-.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKT--TQiPQ--yL~EaGy-----tk~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKT--TQIPQ--YLYEAGY-----TKGGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcc--ccccH--HHHhccc-----ccCCceEeecCcchHHHHHHHHHHHHHhC
Confidence 346777788888888899999999999999 45663 3444322 1245556777899988888876665432
Q ss_pred hcccc-cCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 244 TPMRD-AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 244 ~~~~~-~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
-.+.. .|| .|+.--++. ...-|=+.|-|.|+.-+.. ...|.+.++|||||||.-.-. .+.+..
T Consensus 336 vkLG~eVGY-sIRFEdcTS------------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~--TDILfg 399 (902)
T KOG0923|consen 336 VKLGHEVGY-SIRFEDCTS------------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLH--TDILFG 399 (902)
T ss_pred cccccccce-EEEeccccC------------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhh--hhHHHH
Confidence 22211 111 222222211 1245779999998766544 335889999999999963211 112222
Q ss_pred H---HHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh-----hcCC
Q 007829 323 V---FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL-----QKTP 394 (588)
Q Consensus 323 i---~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l-----~~~~ 394 (588)
+ +..++++..+++.|||+... .|..-+-.-|+....++.. .+--.+...+..+-+...+..+ ....
T Consensus 400 LvKDIar~RpdLKllIsSAT~DAe--kFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~ 473 (902)
T KOG0923|consen 400 LVKDIARFRPDLKLLISSATMDAE--KFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPL 473 (902)
T ss_pred HHHHHHhhCCcceEEeeccccCHH--HHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEeccCC
Confidence 2 22345677899999999754 4444333445555444432 2222222222333333333222 2245
Q ss_pred CCEEEEeCccccHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcce
Q 007829 395 PPVLIFCENKADVDDIHEYLLLK---------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 465 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~---------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~ 465 (588)
+-+|||..-....+...+.|... .+-+..+|+.++.+.+..+.+---.|-.+|++||++++..|.|++|..
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~y 553 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKY 553 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEE
Confidence 67999999988888777777443 244677899999999999888777888999999999999999999999
Q ss_pred EEecCC------------------CCChhHHHHHhcccCCCCCccEEEEEEcC
Q 007829 466 VINYDM------------------PAEIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 466 VI~~~~------------------p~s~~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
||.-++ |-|-.+-.||.|||||.| +|.|+-+++.
T Consensus 554 ViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 554 VIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred EecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 995554 346677889999999996 8999999974
No 134
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.75 E-value=9.9e-17 Score=177.19 Aligned_cols=311 Identities=17% Similarity=0.166 Sum_probs=212.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
+..+.+.+..+.+.+-+++.+.||+|||.-.---++....+. +....+++--|.|--|.-+++++..--..
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~--------~~~~~IicTQPRRIsAIsvAeRVa~ER~~- 245 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES--------GAACNIICTQPRRISAISVAERVAKERGE- 245 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------CCCCeEEecCCchHHHHHHHHHHHHHhcc-
Confidence 677888889999999999999999999966444445544442 24456777789998888888777653211
Q ss_pred cccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCccccc-CCCHHHHHHHHH
Q 007829 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFD 325 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~ 325 (588)
..+-.|+.-.+...... ....+++||.|-|+..+.. .-.+..+..||+||+|.-.- ..|.-.+.+.+-
T Consensus 246 ----~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL 314 (924)
T KOG0920|consen 246 ----SLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLL 314 (924)
T ss_pred ----ccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHh
Confidence 11333433333222211 2368999999999999877 55688999999999997442 234444444444
Q ss_pred hhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcc----------------cceEEE------------eeeh
Q 007829 326 HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN----------------LDVIQE------------VEYV 377 (588)
Q Consensus 326 ~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~----------------~~v~~~------------~~~~ 377 (588)
..++..++|+||||+..+ ....++.....+.+....... ....+. ....
T Consensus 315 ~~~p~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 315 PRNPDLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred hhCCCceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 456788999999998733 233333332222221110000 000000 0000
Q ss_pred ---hhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007829 378 ---KQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLK-------GVEAVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 378 ---~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~r~~~~~~F~~g~~ 445 (588)
-.-.-+..++..+.+ ..+.+|||.+...++..+.+.|... .+-+..+|+.++..++..+...--.|..
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 111234445555543 3678999999999999999999642 2566788999999999999988889999
Q ss_pred EEEEEcCccccCCCCCCcceEEecCC--------CC----------ChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 446 DVLVATDVASKGLDFPDIQHVINYDM--------PA----------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 446 ~VLVaT~~~~~GlDip~v~~VI~~~~--------p~----------s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+|++||++++..|.|++|-.||..+. -. |-.+-.||.|||||. ++|.|+.+++..
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999999999999999995443 22 456678999999998 799999999876
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.6e-17 Score=147.03 Aligned_cols=117 Identities=44% Similarity=0.744 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccC
Q 007829 381 AKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 457 (588)
Q Consensus 381 ~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~G 457 (588)
.+...+...+.+ .+.++||||++...++.++++|...+..+..+||+++..+|..+++.|.+|...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 455555555554 36799999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEE
Q 007829 458 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 497 (588)
Q Consensus 458 lDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~ 497 (588)
+|+|.+++||++++|++...|.|++||++|.|+.|.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.4e-16 Score=165.71 Aligned_cols=302 Identities=21% Similarity=0.244 Sum_probs=197.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh-hc
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL-TP 245 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~-~~ 245 (588)
...+.+.+..+..++-+|+++.||||||.. +| +.++.... +....+-+--|.|..|..+++.+..-+ ..
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGY------ADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhccc------ccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 455666677777788899999999999954 43 33444322 123344555699998888887766543 22
Q ss_pred ccc-cCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHH
Q 007829 246 MRD-AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 246 ~~~-~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~ 324 (588)
+.. .|| .++.--+++ ....|-+.|-|-|+.-.... -.|...+.||+||||.-.-.. +.+..++
T Consensus 428 lG~~VGY-sIRFEdvT~------------~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNt--DilfGll 491 (1042)
T KOG0924|consen 428 LGDTVGY-SIRFEDVTS------------EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNT--DILFGLL 491 (1042)
T ss_pred cccccce-EEEeeecCC------------CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccch--HHHHHHH
Confidence 211 111 122222221 12478899999886554433 247889999999999743211 3333333
Q ss_pred Hhh---hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh-----hcCCCC
Q 007829 325 DHF---KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL-----QKTPPP 396 (588)
Q Consensus 325 ~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l-----~~~~~~ 396 (588)
+.. +.+..+|.+||||... .|..-+-.-|.....++. ..+.-.+...+.++-+...+... ....+-
T Consensus 492 k~~larRrdlKliVtSATm~a~--kf~nfFgn~p~f~IpGRT----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 492 KKVLARRRDLKLIVTSATMDAQ--KFSNFFGNCPQFTIPGRT----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGD 565 (1042)
T ss_pred HHHHHhhccceEEEeeccccHH--HHHHHhCCCceeeecCCc----cceEEEeccCchHHHHHHHHhhheEeeccCCCCC
Confidence 332 3356799999999743 444433334443332222 22322333333444433333322 223567
Q ss_pred EEEEeCccccHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceE
Q 007829 397 VLIFCENKADVDDIHEYLLLK----------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 397 viIF~~s~~~~~~l~~~L~~~----------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~V 466 (588)
+|||.....+++-....+... ++.+..+++.+++.-+.++.+.--.|..+++|||++++..|.+|++.+|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 999999888776655555332 6778899999999999998888888999999999999999999999999
Q ss_pred EecCC------------------CCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 467 INYDM------------------PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 467 I~~~~------------------p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|..+. |-|-.+--||.|||||.| +|.|+-+++.+
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 96654 456777889999999985 89999999875
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=6e-18 Score=135.70 Aligned_cols=78 Identities=44% Similarity=0.807 Sum_probs=75.7
Q ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCC
Q 007829 412 EYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 412 ~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g 489 (588)
++|...|+.+..+||++++.+|..+++.|++|...|||||+++++|+|+|++++||++++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 138
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=1.8e-17 Score=179.32 Aligned_cols=316 Identities=20% Similarity=0.291 Sum_probs=209.0
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
..+.+||..++..+. +.-|-|+...||.|||+. .+.++.++++.. ...||+ |||+|+..|.++.. +|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K------~~~GP~-LvivPlstL~NW~~-Ef 463 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK------QMQGPF-LIIVPLSTLVNWSS-EF 463 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc------ccCCCe-EEeccccccCCchh-hc
Confidence 368899999998866 334788899999999965 455666666643 235665 99999999988654 46
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHH--HHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCH
Q 007829 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE--VVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~ 317 (588)
..|. |.+..+.+.|.-..+..+. ......+|+++|++.+.. .+..+.--++.|+||||.|+|.+..
T Consensus 464 ~kWa--------PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~-- 531 (1157)
T KOG0386|consen 464 PKWA--------PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI-- 531 (1157)
T ss_pred cccc--------cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--
Confidence 6664 5777777777543322221 112458999999987743 1112223356799999999998642
Q ss_pred HHHHHHHHhhhhcceEEEEeecc---------------------------------------------------------
Q 007829 318 DDIREVFDHFKAQRQTLLFSATM--------------------------------------------------------- 340 (588)
Q Consensus 318 ~~i~~i~~~~~~~~q~l~~SAT~--------------------------------------------------------- 340 (588)
..+...++..-.....+++|+|+
T Consensus 532 ~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHk 611 (1157)
T KOG0386|consen 532 CKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHK 611 (1157)
T ss_pred hHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHH
Confidence 33333333211112234444443
Q ss_pred ------------------chHHHHHHH-------Hhc-----cCCeEE-Ee--cCCCCcc------------------cc
Q 007829 341 ------------------PTKIQNFAR-------SAL-----VKPVTV-NV--GRAGAAN------------------LD 369 (588)
Q Consensus 341 ------------------~~~i~~~~~-------~~l-----~~p~~i-~~--~~~~~~~------------------~~ 369 (588)
|.+++..++ ..+ ..+... .. +..+... .+
T Consensus 612 VLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ 691 (1157)
T KOG0386|consen 612 VLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN 691 (1157)
T ss_pred hhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh
Confidence 111111100 000 000000 00 0000000 00
Q ss_pred e----EEEe---eeh---hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Q 007829 370 V----IQEV---EYV---KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISS 439 (588)
Q Consensus 370 v----~~~~---~~~---~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~ 439 (588)
+ ...+ ..+ ....-+..++..|+..+++||.||....-.+.+..+|...++....+.|....++|...++.
T Consensus 692 ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~ 771 (1157)
T KOG0386|consen 692 VENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEI 771 (1157)
T ss_pred hccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHH
Confidence 0 0000 001 11223445566677889999999999999999999999999999999999999999999999
Q ss_pred HhcCC---cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcC
Q 007829 440 FKAGK---KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 440 F~~g~---~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
|+... ..+|.+|.+.+.|+|+..++.||.||..|++....|+.-||.|.|+...+-++...
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99654 44789999999999999999999999999999999999999999998877666543
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=6.9e-17 Score=165.15 Aligned_cols=277 Identities=20% Similarity=0.208 Sum_probs=188.0
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
.+=++-++||.||||.- +++.+.+ ...+++.-|.|-||..+++.+.+. ++.+.++
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~-----------aksGvycGPLrLLA~EV~~r~na~----------gipCdL~ 245 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKS-----------AKSGVYCGPLRLLAHEVYDRLNAL----------GIPCDLL 245 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhh-----------hccceecchHHHHHHHHHHHhhhc----------CCCcccc
Confidence 34456679999999954 3454433 456799999999999999999887 7888888
Q ss_pred EcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh-hhcceEEEEee
Q 007829 260 IGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-KAQRQTLLFSA 338 (588)
Q Consensus 260 ~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~-~~~~q~l~~SA 338 (588)
+|..-...... -..+..+-||-++. . .-..+++.|+||++.|.|...+-.|...+--+ .....+.+
T Consensus 246 TGeE~~~~~~~--~~~a~hvScTVEM~----s----v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG--- 312 (700)
T KOG0953|consen 246 TGEERRFVLDN--GNPAQHVSCTVEMV----S----VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG--- 312 (700)
T ss_pred ccceeeecCCC--CCcccceEEEEEEe----e----cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---
Confidence 88533222111 11245566664332 1 12457899999999999876555554433222 22222222
Q ss_pred ccchHHHHHHHHhccC---CeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHH
Q 007829 339 TMPTKIQNFARSALVK---PVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 339 T~~~~i~~~~~~~l~~---p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~ 415 (588)
.+.+..++++.+.. .+.+ ..++....-.....++..+..-.+.=-|.|-|+++.-.+...+.
T Consensus 313 --epsvldlV~~i~k~TGd~vev-------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE 377 (700)
T KOG0953|consen 313 --EPSVLDLVRKILKMTGDDVEV-------------REYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIE 377 (700)
T ss_pred --CchHHHHHHHHHhhcCCeeEE-------------EeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHH
Confidence 13344555555432 1221 12222222222223455555544455677888999999999999
Q ss_pred HcCCc-EEEEeCCCCHHHHHHHHHHHhc--CCcEEEEEcCccccCCCCCCcceEEecCCC---------CChhHHHHHhc
Q 007829 416 LKGVE-AVAVHGGKDQEEREYAISSFKA--GKKDVLVATDVASKGLDFPDIQHVINYDMP---------AEIENYVHRIG 483 (588)
Q Consensus 416 ~~g~~-~~~ihg~~~~~~r~~~~~~F~~--g~~~VLVaT~~~~~GlDip~v~~VI~~~~p---------~s~~~y~QriG 483 (588)
..|.. +++++|+++++.|..--..|++ ++.+||||||+.++|+|+ +++-||+|++- -+..+-.|..|
T Consensus 378 ~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAG 456 (700)
T KOG0953|consen 378 KAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAG 456 (700)
T ss_pred HhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhh
Confidence 88877 9999999999999999999997 899999999999999999 89999988864 35778899999
Q ss_pred ccCCCCC---ccEEEEEEcCCCChhHHHHHHHHHH
Q 007829 484 RTGRCGK---TGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 484 RagR~g~---~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
||||.|. .|.+++|-.++ +..|++.+.
T Consensus 457 RAGRf~s~~~~G~vTtl~~eD-----L~~L~~~l~ 486 (700)
T KOG0953|consen 457 RAGRFGSKYPQGEVTTLHSED-----LKLLKRILK 486 (700)
T ss_pred cccccccCCcCceEEEeeHhh-----HHHHHHHHh
Confidence 9999974 58888887654 344444444
No 140
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=7.8e-16 Score=162.84 Aligned_cols=305 Identities=19% Similarity=0.206 Sum_probs=186.8
Q ss_pred HHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccC
Q 007829 171 VQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAG 250 (588)
Q Consensus 171 ~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~ 250 (588)
++.+.+|..+.-+|+|+.|||||| -++| +.+++.....+.... +..+=|--|.|--|.-+.++...-+..+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKT--TQvP--QFLYEAGf~s~~~~~-~gmIGITqPRRVAaiamAkRVa~EL~~~~--- 333 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKT--TQVP--QFLYEAGFASEQSSS-PGMIGITQPRRVAAIAMAKRVAFELGVLG--- 333 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcc--ccch--HHHHHcccCCccCCC-CCeeeecCchHHHHHHHHHHHHHHhccCc---
Confidence 345555666677899999999999 4566 445565544333333 33556778999887777766554332221
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh---
Q 007829 251 YPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--- 327 (588)
Q Consensus 251 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~--- 327 (588)
..+...+-+.|+-. ....|-++|-|-|+.-+.+ .+.|..++.||+||||.-.- +.+.+..+++.+
T Consensus 334 -~eVsYqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 334 -SEVSYQIRFDGTIG--------EDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPL 401 (1172)
T ss_pred -cceeEEEEeccccC--------CCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccc--hHHHHHHHHHHHHHH
Confidence 12222333333222 1258999999999877765 44588999999999997432 113333333332
Q ss_pred ----hh------cceEEEEeeccchHHHHHH--HHhcc-CCeEEEecCCCCcccceEEEeeehhhHH----HHHHHHHHh
Q 007829 328 ----KA------QRQTLLFSATMPTKIQNFA--RSALV-KPVTVNVGRAGAANLDVIQEVEYVKQEA----KIVYLLECL 390 (588)
Q Consensus 328 ----~~------~~q~l~~SAT~~~~i~~~~--~~~l~-~p~~i~~~~~~~~~~~v~~~~~~~~~~~----k~~~ll~~l 390 (588)
.. ...+|+||||+--. +|. +.++. .|..+.+.. ....+.-+|......+ .+...+.+.
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVs--DFtenk~LFpi~pPlikVdA---RQfPVsIHF~krT~~DYi~eAfrKtc~IH 476 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVS--DFTENKRLFPIPPPLIKVDA---RQFPVSIHFNKRTPDDYIAEAFRKTCKIH 476 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEec--ccccCceecCCCCceeeeec---ccCceEEEeccCCCchHHHHHHHHHHHHh
Confidence 11 23579999998532 333 22222 222333322 2222322332222221 122233333
Q ss_pred hc-CCCCEEEEeCccccHHHHHHHHHHcCC--------------------------------------------------
Q 007829 391 QK-TPPPVLIFCENKADVDDIHEYLLLKGV-------------------------------------------------- 419 (588)
Q Consensus 391 ~~-~~~~viIF~~s~~~~~~l~~~L~~~g~-------------------------------------------------- 419 (588)
++ ..+.+|||+....+++.|.+.|++.--
T Consensus 477 ~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~ 556 (1172)
T KOG0926|consen 477 KKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQEL 556 (1172)
T ss_pred hcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhh
Confidence 33 456899999999999999999876300
Q ss_pred -------------------------------------------------cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007829 420 -------------------------------------------------EAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 420 -------------------------------------------------~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVa 450 (588)
-+..+++=++.+++.++.+.--.|..-++||
T Consensus 557 ~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVa 636 (1172)
T KOG0926|consen 557 VDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVA 636 (1172)
T ss_pred hcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEe
Confidence 0222344455556666666666788889999
Q ss_pred cCccccCCCCCCcceEEecCCC--------C----------ChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 451 TDVASKGLDFPDIQHVINYDMP--------A----------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p--------~----------s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|++++..+.||+++.||..+.- . |-.+--||+|||||.| .|.||-+++..
T Consensus 637 TNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 637 TNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999999999966543 2 2334459999999996 89999988654
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=1.1e-14 Score=158.40 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc----CCcEEEEEcCccccC
Q 007829 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA----GKKDVLVATDVASKG 457 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~----g~~~VLVaT~~~~~G 457 (588)
....+...+...++.++|.+.|....+.+++.|...---.+.+.|..+ .+...+++|+. |.-.||++|+.+..|
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 345566667778889999999999999999999654323345666442 45668889987 478999999999999
Q ss_pred CCC--------CC--cceEEecCCCCC-------------------------hhHHHHHhcccCCCCCc--cEEEEEEcC
Q 007829 458 LDF--------PD--IQHVINYDMPAE-------------------------IENYVHRIGRTGRCGKT--GIATTFINK 500 (588)
Q Consensus 458 lDi--------p~--v~~VI~~~~p~s-------------------------~~~y~QriGRagR~g~~--g~~~~~~~~ 500 (588)
+|+ |+ +++||+..+|.. .-.+.|-+||.-|.... --.++++++
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 999 33 888998887721 22356888999998554 233444443
Q ss_pred CCChhHHHH
Q 007829 501 NQSETTLLD 509 (588)
Q Consensus 501 ~~~~~~~~~ 509 (588)
.....+-..
T Consensus 616 R~~~~yg~~ 624 (636)
T TIGR03117 616 RIHWPYMES 624 (636)
T ss_pred CCCchhHHH
Confidence 333444333
No 142
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=4.8e-17 Score=164.03 Aligned_cols=305 Identities=21% Similarity=0.260 Sum_probs=193.7
Q ss_pred CCCcHHHHHHHHHHh-cC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVL-SG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il-~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..++|+|..++..++ +| |.-|++.|.|+|||++-+-++.. -...+||||.+.-.+.||...+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t--------------ikK~clvLcts~VSVeQWkqQfk 366 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT--------------IKKSCLVLCTSAVSVEQWKQQFK 366 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee--------------ecccEEEEecCccCHHHHHHHHH
Confidence 578999999999998 33 68899999999999987665542 35679999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------ccCCCCCcceeeecCCcccc
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--------KKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~--------~~~~l~~~~~lIvDEah~l~ 312 (588)
.|+..- .-.++..+.+.. .....++.|+|+|+..+..--.+ ..+.-..+.++++||+|.+.
T Consensus 367 ~wsti~------d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP 435 (776)
T KOG1123|consen 367 QWSTIQ------DDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP 435 (776)
T ss_pred hhcccC------ccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch
Confidence 986421 333444444322 22345789999998655211111 01234567899999999986
Q ss_pred cCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHH-HhccCCeEEEecCCCCcccceE---E----------------
Q 007829 313 DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR-SALVKPVTVNVGRAGAANLDVI---Q---------------- 372 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~-~~l~~p~~i~~~~~~~~~~~v~---~---------------- 372 (588)
..-| +.++......+ -+++|||+-.+-..+.. .++..|-..............+ |
T Consensus 436 A~MF----RRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eY 510 (776)
T KOG1123|consen 436 AKMF----RRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREY 510 (776)
T ss_pred HHHH----HHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHH
Confidence 5444 34443333333 48999998543222111 1111111110000000000000 0
Q ss_pred --------EeeehhhH---HHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 007829 373 --------EVEYVKQE---AKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 373 --------~~~~~~~~---~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~ 441 (588)
...++-.. ..-..|+..-...+.++|||..+.-.....+- +.|- -.|+|..+|.+|..+++.|+
T Consensus 511 L~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi---kl~K--pfIYG~Tsq~ERm~ILqnFq 585 (776)
T KOG1123|consen 511 LRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI---KLGK--PFIYGPTSQNERMKILQNFQ 585 (776)
T ss_pred HhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH---HcCC--ceEECCCchhHHHHHHHhcc
Confidence 00111111 12234555555678899999987654444443 3333 36899999999999999999
Q ss_pred c-CCcEEEEEcCccccCCCCCCcceEEecCCC-CChhHHHHHhcccCCCCC------ccEEEEEEcCCCC
Q 007829 442 A-GKKDVLVATDVASKGLDFPDIQHVINYDMP-AEIENYVHRIGRTGRCGK------TGIATTFINKNQS 503 (588)
Q Consensus 442 ~-g~~~VLVaT~~~~~GlDip~v~~VI~~~~p-~s~~~y~QriGRagR~g~------~g~~~~~~~~~~~ 503 (588)
. ..++-++-+-++-..+|+|.++++|....- .|-.+-.||.||.-|+-+ ...-+++++.+..
T Consensus 586 ~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 586 TNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred cCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 5 468888888999999999999999976654 367778999999988632 2345566666533
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=99.72 E-value=9.9e-18 Score=178.16 Aligned_cols=334 Identities=20% Similarity=0.218 Sum_probs=199.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g----~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
.|+.+.. .++...+.-+...+|+|+|++|+..++.| ..-=+++..|+|||+..+-.+ ..+ ..
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eal------------a~ 206 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EAL------------AA 206 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHH------------hh
Confidence 4444432 45555565566789999999999999865 234567788999998764432 222 23
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH--------------------HHH---HH--hc
Q 007829 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS--------------------QLE---VV--KR 274 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~--------------------~~~---~l--~~ 274 (588)
.++|+|+|+.+|..|+.+.+..-.. + .++...++++..... ... .. ..
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~-l------~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~ 279 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKE-L------DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKAN 279 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccC-c------cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccC
Confidence 6799999999999999988876532 1 556655555332211 111 11 12
Q ss_pred CCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhh-----hcceEEEEeeccchH---HH-
Q 007829 275 GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-----AQRQTLLFSATMPTK---IQ- 345 (588)
Q Consensus 275 ~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~-----~~~q~l~~SAT~~~~---i~- 345 (588)
+--||++|++.+...-......+..+++||.|||||-.......+=..-+..+. .....+.||||+--- ..
T Consensus 280 ~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~ 359 (1518)
T COG4889 280 GLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKA 359 (1518)
T ss_pred CcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhh
Confidence 567999999999777666677789999999999999764321111111111111 112347788887211 00
Q ss_pred -----------------------------HHHHHhccCCeEEEecCCCCcccceEEEeee-hh------hHHHHHHHHHH
Q 007829 346 -----------------------------NFARSALVKPVTVNVGRAGAANLDVIQEVEY-VK------QEAKIVYLLEC 389 (588)
Q Consensus 346 -----------------------------~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~-~~------~~~k~~~ll~~ 389 (588)
...+.++.+.-++.............+.... .. .-.++.-.-.-
T Consensus 360 kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnG 439 (1518)
T COG4889 360 KAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNG 439 (1518)
T ss_pred hhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhh
Confidence 1122222222211111111111111111100 00 01111111111
Q ss_pred hhcC----------------CCCEEEEeCccccHHHHHHHHHH-------------cCCcEE--EEeCCCCHHHHHHHHH
Q 007829 390 LQKT----------------PPPVLIFCENKADVDDIHEYLLL-------------KGVEAV--AVHGGKDQEEREYAIS 438 (588)
Q Consensus 390 l~~~----------------~~~viIF~~s~~~~~~l~~~L~~-------------~g~~~~--~ihg~~~~~~r~~~~~ 438 (588)
|.+. ..+.|-||.+++....+++.+.. .++.+. -+.|.|+..+|...+.
T Consensus 440 lakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~ 519 (1518)
T COG4889 440 LAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLE 519 (1518)
T ss_pred hhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHh
Confidence 1110 12578999999888877776632 234444 4568899988854443
Q ss_pred ---HHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCC-CccEEEEEE
Q 007829 439 ---SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG-KTGIATTFI 498 (588)
Q Consensus 439 ---~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g-~~g~~~~~~ 498 (588)
.|...+++||--...+++|+|+|.++-||+|++-.++-+.+|.+||+.|-. .+..+++++
T Consensus 520 l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 520 LKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred ccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 234567899988899999999999999999999999999999999999963 233444444
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.71 E-value=3.6e-15 Score=172.19 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=83.9
Q ss_pred HHhhcCCCCEEEEeCccccHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC--c
Q 007829 388 ECLQKTPPPVLIFCENKADVDDIHEYLLLKGV--EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD--I 463 (588)
Q Consensus 388 ~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~--v 463 (588)
..+...++++|||++|....+.+++.|..... ....+.-+++...|..+++.|+.++-.||++|+.+.+|+|+|+ +
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l 825 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDEL 825 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCce
Confidence 44445678999999999999999999975432 1223333444456788999999998899999999999999998 5
Q ss_pred ceEEecCCCC-C-----------------------------hhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 464 QHVINYDMPA-E-----------------------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 464 ~~VI~~~~p~-s-----------------------------~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
++||...+|. + +..+.|.+||.-|.....-++++++..
T Consensus 826 ~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 826 SCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 7898888773 1 122468889999986554455555544
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.2e-15 Score=136.07 Aligned_cols=144 Identities=37% Similarity=0.516 Sum_probs=110.7
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEE
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (588)
+++++.++||+|||.+++..+...... ...++++|++|++.++.|+.+.+..+... .+.+..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-------~~~~~~~~ 64 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---------LKGGQVLVLAPTRELANQVAERLKELFGE-------GIKVGYLI 64 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-------CcEEEEEe
Confidence 478999999999999988887765533 24678999999999999999998887631 46677777
Q ss_pred cCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeecc
Q 007829 261 GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 261 gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
++............+.+|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 65 ~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 65 GGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 77666665555567799999999999887776655567889999999999987654343222333445667899999996
No 146
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.65 E-value=4.6e-15 Score=154.98 Aligned_cols=120 Identities=21% Similarity=0.316 Sum_probs=107.5
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE-EEEEcCccccCCCC
Q 007829 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD-VLVATDVASKGLDF 460 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~-VLVaT~~~~~GlDi 460 (588)
++..|+..|...++++|+|+...+..+.+.+||..+|+....+.|.....+|..++..|....+- +|++|.+.+.|||+
T Consensus 1032 ~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINL 1111 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINL 1111 (1185)
T ss_pred eHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccc
Confidence 35667777778899999999999999999999999999999999999999999999999986654 58999999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccCCCCCccE--EEEEEcCC
Q 007829 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI--ATTFINKN 501 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~--~~~~~~~~ 501 (588)
.+++.||+||..|++..-.|...||.|.|++.- ++-++...
T Consensus 1112 TAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1112 TAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999999999999998865 44455544
No 147
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=2.4e-15 Score=141.40 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=102.8
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVLS-------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYE 237 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~-------g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~ 237 (588)
+|+++|.+++..+.. .+++++.+|||||||.+++..+.... . +++|+||+..|+.|+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------~--~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------R--KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH------------C--EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc------------c--ceeEecCHHHHHHHHHH
Confidence 589999999999883 68999999999999988876555432 1 79999999999999999
Q ss_pred HHHHHhhcccccCC----CCce-EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-----------cCCCCCcc
Q 007829 238 VVEQFLTPMRDAGY----PDLR-TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-----------KMNLDNCR 301 (588)
Q Consensus 238 ~~~~~~~~~~~~~~----~~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-----------~~~l~~~~ 301 (588)
.+..+......... +... .....................+++++|...|....... .......+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 99777542210000 0000 00011111111222222346799999999998776532 12345678
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
+||+||||++.... .++.++. .....+|+||||++
T Consensus 149 ~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999999976532 1555555 34556899999986
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=1.6e-14 Score=159.34 Aligned_cols=306 Identities=17% Similarity=0.248 Sum_probs=206.7
Q ss_pred CCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
....|+|.+.++.+. +++++++.+|+|||||.++-++++. +....++++++|.-+.+..+++.+.+-
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------~~~~~~~vyi~p~~~i~~~~~~~w~~~ 1209 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------PDTIGRAVYIAPLEEIADEQYRDWEKK 1209 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------CccceEEEEecchHHHHHHHHHHHHHh
Confidence 445899999999988 5568899999999999999888774 135668999999999999888888776
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC---CH--
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG---FE-- 317 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~---~~-- 317 (588)
+..+ .+.+++.+.|..+..-. +....+|+|+||+++ +.+. ..+.+++.|.||+|.+.+.. ++
T Consensus 1210 f~~~-----~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~g~v~evi 1276 (1674)
T KOG0951|consen 1210 FSKL-----LGLRIVKLTGETSLDLK---LLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVYGAVYEVI 1276 (1674)
T ss_pred hccc-----cCceEEecCCccccchH---HhhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccCCceEEEE
Confidence 5544 27777777776555432 223359999999999 5553 67888999999999987432 10
Q ss_pred HHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccc--eEEEeeehhhHHHHHHH----H---H
Q 007829 318 DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLD--VIQEVEYVKQEAKIVYL----L---E 388 (588)
Q Consensus 318 ~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~--v~~~~~~~~~~~k~~~l----l---~ 388 (588)
-.++.|.+.+.+..+++.+|..+.+. .+++ .......++........+. -+|.+...........+ . .
T Consensus 1277 ~S~r~ia~q~~k~ir~v~ls~~lana-~d~i--g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~ 1353 (1674)
T KOG0951|consen 1277 CSMRYIASQLEKKIRVVALSSSLANA-RDLI--GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIV 1353 (1674)
T ss_pred eeHHHHHHHHHhheeEEEeehhhccc-hhhc--cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHH
Confidence 12778888888888899999887653 2221 1111122222221111111 12222222112211111 1 1
Q ss_pred HhhcCCCCEEEEeCccccHHHHHHHHHHc----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007829 389 CLQKTPPPVLIFCENKADVDDIHEYLLLK----------------------GVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 389 ~l~~~~~~viIF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~ 446 (588)
.....+.+.+||++++++|..++.-|... .+..++=|.+++..+..-+-..|..|.+.
T Consensus 1354 ~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~ 1433 (1674)
T KOG0951|consen 1354 RHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQ 1433 (1674)
T ss_pred HHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEE
Confidence 12235779999999999998877655211 12223338899999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEE----ecC------CCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 447 VLVATDVASKGLDFPDIQHVI----NYD------MPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 447 VLVaT~~~~~GlDip~v~~VI----~~~------~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|+|...- ..|+-...--+|+ .|| .+.++....|++|+|.| .|.++++....
T Consensus 1434 v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~ 1494 (1674)
T KOG0951|consen 1434 VCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTP 1494 (1674)
T ss_pred EEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCc
Confidence 9998876 7777764333333 222 34568899999999998 47888888766
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=157.11 Aligned_cols=119 Identities=22% Similarity=0.310 Sum_probs=103.2
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--cEEEEEcCccccCCCC
Q 007829 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK--KDVLVATDVASKGLDF 460 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~--~~VLVaT~~~~~GlDi 460 (588)
+..|+..|+..++++|||.......+.|..+|..+|+-.+.+.|..+-++|...+++|+... ..++++|...+.|||+
T Consensus 1265 LAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred HHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 33445555667789999999999999999999999999999999999999999999999764 4578899999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccCCCCCccEE--EEEEcCC
Q 007829 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~--~~~~~~~ 501 (588)
.+++.||+||..||+..-.|.-.|+.|.|++..+ |-||++.
T Consensus 1345 tgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1345 TGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999888888888888877644 5566655
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=3.4e-14 Score=157.26 Aligned_cols=125 Identities=20% Similarity=0.271 Sum_probs=99.7
Q ss_pred eehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEEEEE
Q 007829 375 EYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG-KKDVLVA 450 (588)
Q Consensus 375 ~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VLVa 450 (588)
.|.....|+..+++.+. +.+.||||-+.|+...+.++..|...|++.-++++.....+-.-+- ..| ...|-||
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTIA 682 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTIA 682 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEEe
Confidence 34455667777666553 4788999999999999999999999999988888864433332222 234 3568999
Q ss_pred cCccccCCCCC--------CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 451 TDVASKGLDFP--------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 451 T~~~~~GlDip--------~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
|++++||.||. +==|||--..+.|..---|..||+||.|.+|.+-.|++-.+
T Consensus 683 TNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 683 TNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred ccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99999999996 33478888889999999999999999999999999998774
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=4.4e-15 Score=119.79 Aligned_cols=81 Identities=48% Similarity=0.816 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCC
Q 007829 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 409 ~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~ 488 (588)
.++++|...++.+..+||+++..+|..+++.|++|...|||+|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007829 489 G 489 (588)
Q Consensus 489 g 489 (588)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=3.7e-13 Score=151.74 Aligned_cols=115 Identities=24% Similarity=0.363 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHHhcCCc-EEEEEcCccccCCCC
Q 007829 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKDQEEREYAISSFKAGKK-DVLVATDVASKGLDF 460 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~~~r~~~~~~F~~g~~-~VLVaT~~~~~GlDi 460 (588)
...+...+...++++|||++|......+++.|...... ....+|..+ +...++.|+.+.- -++|+|..+++|+|+
T Consensus 468 ~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 468 AAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 44555666677789999999999999999999876653 344555444 4478888887655 899999999999999
Q ss_pred CC--cceEEecCCCC------------------------------ChhHHHHHhcccCCCCCccEEEEEEcC
Q 007829 461 PD--IQHVINYDMPA------------------------------EIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 461 p~--v~~VI~~~~p~------------------------------s~~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
|+ .+.||..++|. -+....|.+||+-|.-...-++++++.
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 98 57788888873 133457999999997444444444444
No 153
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=2.2e-13 Score=137.50 Aligned_cols=324 Identities=19% Similarity=0.245 Sum_probs=195.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+..|...++++...+.|++..--.-+..+...+..+.+++-+++++.||||||. ++|-...-.... ....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~--------~~~~ 93 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELS--------HLTG 93 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHh--------hccc
Confidence 678999999999999998874333455666667777788999999999999994 445332221110 1233
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcc-c-ccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPM-R-DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~-~-~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~ 299 (588)
+..--|.|.-|.++..+...-..-. . ..|| .|+.--+++. .. =+-++|-+.|+.-..... .+.+
T Consensus 94 v~CTQprrvaamsva~RVadEMDv~lG~EVGy-sIrfEdC~~~---~T---------~Lky~tDgmLlrEams~p-~l~~ 159 (699)
T KOG0925|consen 94 VACTQPRRVAAMSVAQRVADEMDVTLGEEVGY-SIRFEDCTSP---NT---------LLKYCTDGMLLREAMSDP-LLGR 159 (699)
T ss_pred eeecCchHHHHHHHHHHHHHHhccccchhccc-cccccccCCh---hH---------HHHHhcchHHHHHHhhCc-cccc
Confidence 5566688888888776665433211 0 0111 1222111111 10 112456655544433333 3788
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhh---hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEe--
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-- 374 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~-- 374 (588)
+++||+||||.-.-. .+.+..+++.. +++.++|.+|||+-.. -.+.++.++..+.+.. .....+....
T Consensus 160 y~viiLDeahERtlA--TDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg--~~PvEi~Yt~e~ 232 (699)
T KOG0925|consen 160 YGVIILDEAHERTLA--TDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG--THPVEIFYTPEP 232 (699)
T ss_pred ccEEEechhhhhhHH--HHHHHHHHHHHHhhCCCceEEEeecccchH---HHHHHhCCCCeeecCC--CCceEEEecCCC
Confidence 999999999973211 02222222222 3467899999998643 2445555554444432 1222221111
Q ss_pred eehhhHHHHHHHHHHhh-cCCCCEEEEeCccccHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHH---h
Q 007829 375 EYVKQEAKIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLK---------GVEAVAVHGGKDQEEREYAISSF---K 441 (588)
Q Consensus 375 ~~~~~~~k~~~ll~~l~-~~~~~viIF~~s~~~~~~l~~~L~~~---------g~~~~~ihg~~~~~~r~~~~~~F---~ 441 (588)
....-++.+..++++.. +..+-+|||.....+.+...+.+... .+.+..+| +.+...+.+-. .
T Consensus 233 erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~ 308 (699)
T KOG0925|consen 233 ERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKR 308 (699)
T ss_pred ChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCccc
Confidence 11111233344444332 34678999999999888888877643 23456666 22222222111 1
Q ss_pred cC--CcEEEEEcCccccCCCCCCcceEEecCC------------------CCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 442 AG--KKDVLVATDVASKGLDFPDIQHVINYDM------------------PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 442 ~g--~~~VLVaT~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+| ..+|+|+|+.+...+.++++.+||.-++ |-|..+-.||.||+||. .+|.|+.++++.
T Consensus 309 ~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 309 NGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 22 3569999999999999999999996654 45777889999999997 799999999865
No 154
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.57 E-value=3.5e-13 Score=136.14 Aligned_cols=109 Identities=20% Similarity=0.189 Sum_probs=96.5
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEE-EEEcCccccCCCCCCcceEEecCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG-KKDV-LVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g-~~~V-LVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
.-+.|||..-....+.+.-.|.+.|+.++-+.|+|++..|..+++.|++. .++| ||+-.+.+..+|+..+.+|+++|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 44789999999999999999999999999999999999999999999976 4665 667788889999999999999999
Q ss_pred CCChhHHHHHhcccCCCCCc--cEEEEEEcCCC
Q 007829 472 PAEIENYVHRIGRTGRCGKT--GIATTFINKNQ 502 (588)
Q Consensus 472 p~s~~~y~QriGRagR~g~~--g~~~~~~~~~~ 502 (588)
.|++.--.|...|..|.|+. -.++.|+-++.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999999999999875 46677777663
No 155
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.55 E-value=7e-12 Score=140.75 Aligned_cols=105 Identities=19% Similarity=0.347 Sum_probs=77.2
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHh----cCCcEEEEEcCccccCCCCCC--cce
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFK----AGKKDVLVATDVASKGLDFPD--IQH 465 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~r~~~~~~F~----~g~~~VLVaT~~~~~GlDip~--v~~ 465 (588)
.++.+|||++|....+.++..|... +.. ...+|.. .|..+++.|+ .|+..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 5667999999999999999998743 333 4456642 4677887776 467889999999999999998 788
Q ss_pred EEecCCCC----Ch--------------------------hHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 466 VINYDMPA----EI--------------------------ENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 466 VI~~~~p~----s~--------------------------~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
||...+|. ++ ..+.|.+||.-|....--++++++..
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99888773 11 12358889999985443345555544
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=2.1e-12 Score=146.00 Aligned_cols=134 Identities=20% Similarity=0.306 Sum_probs=92.2
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCc------EEEEeCCCCHHHHHHHHHHHhc----CCcEEEEEc--Ccc
Q 007829 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE------AVAVHGGKDQEEREYAISSFKA----GKKDVLVAT--DVA 454 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~------~~~ihg~~~~~~r~~~~~~F~~----g~~~VLVaT--~~~ 454 (588)
.+.+...++.+|||++|....+.+.+.+...|.. ..++.-+....++..+++.|+. |+..||+|+ ..+
T Consensus 515 ~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~ 594 (705)
T TIGR00604 515 VEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKV 594 (705)
T ss_pred HHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcc
Confidence 3444556889999999999999999988765431 1223322333578889999964 466799999 889
Q ss_pred ccCCCCCC--cceEEecCCCC-Ch------------------------------hHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 455 SKGLDFPD--IQHVINYDMPA-EI------------------------------ENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 455 ~~GlDip~--v~~VI~~~~p~-s~------------------------------~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
++|||+++ ++.||..++|. ++ ....|.+||+-|.-+.--++++++..
T Consensus 595 sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 595 SEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred cCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 99999998 78899999885 11 12358899999986555566666554
Q ss_pred CChhHHHHHHHHHHHhcCcCchHHhhccC
Q 007829 502 QSETTLLDLKHLLQEAKQRIPPVLAELND 530 (588)
Q Consensus 502 ~~~~~~~~l~~~l~~~~~~vp~~l~~l~~ 530 (588)
-.. ......+|.|+...-.
T Consensus 675 ~~~----------~~~~~~lp~W~~~~~~ 693 (705)
T TIGR00604 675 YAR----------SNKRKKLPKWIQDTIQ 693 (705)
T ss_pred cCC----------cchhhhcCHHHHhhcc
Confidence 111 1133567877765433
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=6.9e-13 Score=147.74 Aligned_cols=316 Identities=20% Similarity=0.208 Sum_probs=183.1
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhc------CCC--EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007829 156 KKLKAKGIVQPTPIQVQGLPVVLS------GRD--MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 156 ~~l~~~g~~~p~~~Q~~~i~~il~------g~d--vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+.|.+..-..-+.||-.|+..+.. ... ++-.|.||+|||++=.- ++..+.. ...|.+..|..-
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR--ImyaLsd-------~~~g~RfsiALG 469 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR--AMYALRD-------DKQGARFAIALG 469 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH--HHHHhCC-------CCCCceEEEEcc
Confidence 334333233447899999998873 123 34459999999966332 2333332 246778899999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH-------------------------------------
Q 007829 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE------------------------------------- 270 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~------------------------------------- 270 (588)
.|.|-.|+-+.+++-+. ..+-...+++||....+-..
T Consensus 470 LRTLTLQTGda~r~rL~------L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~ 543 (1110)
T TIGR02562 470 LRSLTLQTGHALKTRLN------LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLD 543 (1110)
T ss_pred ccceeccchHHHHHhcC------CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCcc
Confidence 99999998888887543 12334445555433322111
Q ss_pred ------HHhc--------CCcEEEeChHHHHHHHHc--c-cCCCC--C--cceeeecCCcccccCCCHHHHHHHHHhhh-
Q 007829 271 ------VVKR--------GVHIVVATPGRLKDMLAK--K-KMNLD--N--CRYLTLDEADRLVDLGFEDDIREVFDHFK- 328 (588)
Q Consensus 271 ------~l~~--------~~~IvV~Tp~~l~~~l~~--~-~~~l~--~--~~~lIvDEah~l~~~~~~~~i~~i~~~~~- 328 (588)
.+.+ .+.|+|||++.++..... . ...+. . =+.|||||+|.+-..-+ ..+..++....
T Consensus 544 ~~~l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~ 622 (1110)
T TIGR02562 544 TIELLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGL 622 (1110)
T ss_pred chhhhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHH
Confidence 1100 268999999999877632 1 11111 1 25799999998643221 22233333221
Q ss_pred hcceEEEEeeccchHHHHHHHHh-----------cc---CCeEE---EecCCCCcccceE--------------------
Q 007829 329 AQRQTLLFSATMPTKIQNFARSA-----------LV---KPVTV---NVGRAGAANLDVI-------------------- 371 (588)
Q Consensus 329 ~~~q~l~~SAT~~~~i~~~~~~~-----------l~---~p~~i---~~~~~~~~~~~v~-------------------- 371 (588)
-...++++|||+|+.+...+... .. .++.+ .+.........+.
T Consensus 623 lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L 702 (1110)
T TIGR02562 623 LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQL 702 (1110)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 23569999999999876533221 12 12111 1111110000000
Q ss_pred --------EEeeehh-----hHHHHHHHHHHh--------hc-------CCCC---EEEEeCccccHHHHHHHHHHc---
Q 007829 372 --------QEVEYVK-----QEAKIVYLLECL--------QK-------TPPP---VLIFCENKADVDDIHEYLLLK--- 417 (588)
Q Consensus 372 --------~~~~~~~-----~~~k~~~ll~~l--------~~-------~~~~---viIF~~s~~~~~~l~~~L~~~--- 417 (588)
-.+..+. .......+.+.+ +. .+.+ .+|-++++..+..++..|...
T Consensus 703 ~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~ 782 (1110)
T TIGR02562 703 AKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAE 782 (1110)
T ss_pred hcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccc
Confidence 0000010 011111111111 00 1122 477788888888888888654
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHHH----------------------hc----CCcEEEEEcCccccCCCCCCcceEEe
Q 007829 418 ---GVEAVAVHGGKDQEEREYAISSF----------------------KA----GKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 418 ---g~~~~~ihg~~~~~~r~~~~~~F----------------------~~----g~~~VLVaT~~~~~GlDip~v~~VI~ 468 (588)
.+.+.+||+......|..+.+.. .+ +...|+|+|.+.+.|+|+ +.+++|.
T Consensus 783 ~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~ 861 (1110)
T TIGR02562 783 EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA 861 (1110)
T ss_pred cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee
Confidence 34578899999888887766553 12 466899999999999998 6776664
Q ss_pred cCCCCChhHHHHHhcccCCCCC
Q 007829 469 YDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 469 ~~~p~s~~~y~QriGRagR~g~ 490 (588)
- |.++...+|++||+.|-|.
T Consensus 862 ~--~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 862 D--PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred c--cCcHHHHHHHhhccccccc
Confidence 3 6679999999999999764
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.51 E-value=4.7e-12 Score=139.74 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=163.0
Q ss_pred cCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH
Q 007829 188 FTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS 267 (588)
Q Consensus 188 ~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~ 267 (588)
-+|||||.+|+-.+-..+ . .|..+|||+|...|..|+.+.++..+. +..+..++++.+..+
T Consensus 168 ~~GSGKTevyl~~i~~~l-~----------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--------~~~v~~lhS~l~~~~ 228 (665)
T PRK14873 168 LPGEDWARRLAAAAAATL-R----------AGRGALVVVPDQRDVDRLEAALRALLG--------AGDVAVLSAGLGPAD 228 (665)
T ss_pred CCCCcHHHHHHHHHHHHH-H----------cCCeEEEEecchhhHHHHHHHHHHHcC--------CCcEEEECCCCCHHH
Confidence 359999999877665443 3 477899999999999999999998863 256888998887765
Q ss_pred HHHH---HhcC-CcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccC---CCHHHHHHH--HHhhhhcceEEEEee
Q 007829 268 QLEV---VKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL---GFEDDIREV--FDHFKAQRQTLLFSA 338 (588)
Q Consensus 268 ~~~~---l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~---~~~~~i~~i--~~~~~~~~q~l~~SA 338 (588)
.... +..| +.|||+|-..+ ...+.++.+|||||=|--.-. +..-..+.+ +..-.....+|+.||
T Consensus 229 R~~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 229 RYRRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECC
Confidence 5443 3344 79999994322 346889999999999964321 111122222 223334667999999
Q ss_pred ccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeeh--------------hhHHHHHHHHHHhhcCCCCEEEEeCcc
Q 007829 339 TMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV--------------KQEAKIVYLLECLQKTPPPVLIFCENK 404 (588)
Q Consensus 339 T~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~--------------~~~~k~~~ll~~l~~~~~~viIF~~s~ 404 (588)
|++-+....+..-....+...-......... ...+... -+..-+..+.+.+ +.+ ++|||.|.+
T Consensus 302 TPSles~~~~~~g~~~~~~~~~~~~~~~~P~-v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L-~~g-qvll~lnRr 378 (665)
T PRK14873 302 ARTAEAQALVESGWAHDLVAPRPVVRARAPR-VRALGDSGLALERDPAARAARLPSLAFRAARDAL-EHG-PVLVQVPRR 378 (665)
T ss_pred CCCHHHHHHHhcCcceeeccccccccCCCCe-EEEEeCchhhhccccccccCccCHHHHHHHHHHH-hcC-cEEEEecCC
Confidence 9987766554432221111100000011111 1111100 0111222222333 345 999999886
Q ss_pred cc-----------------------------------------------------------HHHHHHHHHHc--CCcEEE
Q 007829 405 AD-----------------------------------------------------------VDDIHEYLLLK--GVEAVA 423 (588)
Q Consensus 405 ~~-----------------------------------------------------------~~~l~~~L~~~--g~~~~~ 423 (588)
-. .+.+.+.|... +.++..
T Consensus 379 Gyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r 458 (665)
T PRK14873 379 GYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT 458 (665)
T ss_pred CCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE
Confidence 33 33333333322 233333
Q ss_pred EeCCCCHHHHHHHHHHHhcCCcEEEEEcC----ccccCCCCCCcceEEecCCC------C------ChhHHHHHhcccCC
Q 007829 424 VHGGKDQEEREYAISSFKAGKKDVLVATD----VASKGLDFPDIQHVINYDMP------A------EIENYVHRIGRTGR 487 (588)
Q Consensus 424 ihg~~~~~~r~~~~~~F~~g~~~VLVaT~----~~~~GlDip~v~~VI~~~~p------~------s~~~y~QriGRagR 487 (588)
+. ++.+++.|. ++.+|||+|. +++ +++..|+..|.. . ....+.|-.||+||
T Consensus 459 ~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr 525 (665)
T PRK14873 459 SG-------GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRP 525 (665)
T ss_pred EC-------hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcC
Confidence 22 234788886 5999999999 555 356777655532 1 24456789999999
Q ss_pred CCCccEEEEEEcCC
Q 007829 488 CGKTGIATTFINKN 501 (588)
Q Consensus 488 ~g~~g~~~~~~~~~ 501 (588)
.+..|.+++..+++
T Consensus 526 ~~~~G~V~iq~~p~ 539 (665)
T PRK14873 526 RADGGQVVVVAESS 539 (665)
T ss_pred CCCCCEEEEEeCCC
Confidence 99999988875333
No 159
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.48 E-value=1.7e-12 Score=136.54 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=95.8
Q ss_pred hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh--cCCcEEE-EEcCccccCCCCCCcceEE
Q 007829 391 QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK--AGKKDVL-VATDVASKGLDFPDIQHVI 467 (588)
Q Consensus 391 ~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~--~g~~~VL-VaT~~~~~GlDip~v~~VI 467 (588)
.....+++|...-......+...|...|+....+||.....+|..+++.|+ +|..+|+ ++-.+.+.|+|+-+.+|+|
T Consensus 743 ~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHli 822 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLI 822 (901)
T ss_pred hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEE
Confidence 335667888888877788888999999999999999999999999999998 4556665 5557778999999999999
Q ss_pred ecCCCCChhHHHHHhcccCCCCCccEEEE--EEcCCCCh
Q 007829 468 NYDMPAEIENYVHRIGRTGRCGKTGIATT--FINKNQSE 504 (588)
Q Consensus 468 ~~~~p~s~~~y~QriGRagR~g~~g~~~~--~~~~~~~~ 504 (588)
..|+-|++.-=.|...|..|.|++..+++ |+..+..+
T Consensus 823 lvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 823 LVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred EEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHH
Confidence 99999999999999999999999876654 45555333
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=7.4e-12 Score=146.36 Aligned_cols=112 Identities=23% Similarity=0.324 Sum_probs=99.7
Q ss_pred hcCCC--CEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CcEEEEEcCccccCCCCCCcceE
Q 007829 391 QKTPP--PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG--KKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 391 ~~~~~--~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g--~~~VLVaT~~~~~GlDip~v~~V 466 (588)
...+. ++|||++.....+.+..+|...++.+..++|.++...|...++.|.++ ..-++++|.+++.|+|+...++|
T Consensus 706 ~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 706 LEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred HhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 34566 999999999999999999999999999999999999999999999986 45577888899999999999999
Q ss_pred EecCCCCChhHHHHHhcccCCCCCccEE--EEEEcCCC
Q 007829 467 INYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKNQ 502 (588)
Q Consensus 467 I~~~~p~s~~~y~QriGRagR~g~~g~~--~~~~~~~~ 502 (588)
|+||..|++....|...|+.|.|++..+ +-|+..+.
T Consensus 786 i~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 786 ILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred EEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999999999999988754 55555553
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.40 E-value=5.5e-11 Score=128.38 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=93.8
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCC----c
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLK----------------------GVEAVAVHGGKDQEEREYAISSFKAGK----K 445 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~r~~~~~~F~~g~----~ 445 (588)
..+.++|||..+....+.|..+|... |.....|.|......|......|++-. .
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 46789999999999999999998542 566788999999999999999999642 2
Q ss_pred EEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEE
Q 007829 446 DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 497 (588)
Q Consensus 446 ~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~ 497 (588)
-.||+|.+.+.|||+-+++-||+||..|+|.--.|-|=|+.|.|++.-++++
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 3799999999999999999999999999999999999999999998876654
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.36 E-value=5e-11 Score=130.00 Aligned_cols=286 Identities=15% Similarity=0.187 Sum_probs=175.9
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcC
Q 007829 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg 262 (588)
.++-+|+|||||.+..-+ +...+. ....++|+|.-.++|+.++...++... ++++....-.++
T Consensus 52 ~vVRSpMGTGKTtaLi~w-Lk~~l~---------~~~~~VLvVShRrSL~~sL~~rf~~~~-------l~gFv~Y~d~~~ 114 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRW-LKDALK---------NPDKSVLVVSHRRSLTKSLAERFKKAG-------LSGFVNYLDSDD 114 (824)
T ss_pred EEEECCCCCCcHHHHHHH-HHHhcc---------CCCCeEEEEEhHHHHHHHHHHHHhhcC-------CCcceeeecccc
Confidence 466699999999765443 333222 256789999999999999998887652 223332222221
Q ss_pred cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHH------HH-HHHhhhhcceEEE
Q 007829 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDI------RE-VFDHFKAQRQTLL 335 (588)
Q Consensus 263 ~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i------~~-i~~~~~~~~q~l~ 335 (588)
..+.. +..+-+++..+.|..+. ...+.++++||+||+-..+..=|.+.+ .. +...+.....+|+
T Consensus 115 ~~i~~------~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~ 185 (824)
T PF02399_consen 115 YIIDG------RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIV 185 (824)
T ss_pred ccccc------cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEE
Confidence 11111 12466777776664442 234677999999999887654232222 22 2233456678999
Q ss_pred EeeccchHHHHHHHHhccC-CeEEEecCCCCcccc-------------------------------------eEEEeeeh
Q 007829 336 FSATMPTKIQNFARSALVK-PVTVNVGRAGAANLD-------------------------------------VIQEVEYV 377 (588)
Q Consensus 336 ~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~~~~~~-------------------------------------v~~~~~~~ 377 (588)
+-||+.....+|+...... ++.+.++.--..... ......+.
T Consensus 186 ~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (824)
T PF02399_consen 186 MDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS 265 (824)
T ss_pred ecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccc
Confidence 9999999999999987653 333322210000000 00000011
Q ss_pred hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccC
Q 007829 378 KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 457 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~G 457 (588)
.....+...+..-...+.++-||+.|...++.+++.....+..+..++|..+..+. +. -++.+|++.|.+...|
T Consensus 266 ~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG 339 (824)
T PF02399_consen 266 NDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVG 339 (824)
T ss_pred cchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEE
Confidence 11222222222222356789999999999999999999888899999887665532 21 4679999999999999
Q ss_pred CCCCCcce--EEec--CCC--CChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 458 LDFPDIQH--VINY--DMP--AEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 458 lDip~v~~--VI~~--~~p--~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+++-...+ |.-| .+. .++.+..|++||+ |.=.....+++++..
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred eccchhhceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 99965433 4434 222 2455689999999 543455555665543
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.30 E-value=1.4e-10 Score=127.26 Aligned_cols=312 Identities=21% Similarity=0.249 Sum_probs=194.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+.+|.-+--. -...-|.-+.||-|||+++.+|+.-..+. |..+.++...--||.--.+++..+..
T Consensus 80 ~~~dVQliG~i~--lh~g~iaEM~TGEGKTL~atlp~ylnaL~-----------gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLGGIV--LHLGDIAEMRTGEGKTLVATLPAYLNALA-----------GKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhhhhh--hcCCceeeeecCCchHHHHHHHHHHHhcC-----------CCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 455555554444 44455889999999999999999766543 56689999999999998999998888
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHc------ccCCCCCcceeeecCCcccc-cC--
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAK------KKMNLDNCRYLTLDEADRLV-DL-- 314 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~------~~~~l~~~~~lIvDEah~l~-~~-- 314 (588)
.+ ++.+++...+.+..++..... |||..+|-..| .|.+.. .......+.|.|+||+|-++ |.
T Consensus 147 ~L------GlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEAR 218 (822)
T COG0653 147 FL------GLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEAR 218 (822)
T ss_pred Hc------CCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccc
Confidence 77 999999999887766655443 79999997765 222221 23335568899999999865 10
Q ss_pred ------C-------CHHHHHHHHHhhhhc--------ceEE---------------------------------------
Q 007829 315 ------G-------FEDDIREVFDHFKAQ--------RQTL--------------------------------------- 334 (588)
Q Consensus 315 ------~-------~~~~i~~i~~~~~~~--------~q~l--------------------------------------- 334 (588)
| ....+..+...+... .+.+
T Consensus 219 tPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~ 298 (822)
T COG0653 219 TPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHI 298 (822)
T ss_pred cceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHH
Confidence 1 112222222222111 0111
Q ss_pred ----------------------------------------------------------------------EEeeccchHH
Q 007829 335 ----------------------------------------------------------------------LFSATMPTKI 344 (588)
Q Consensus 335 ----------------------------------------------------------------------~~SAT~~~~i 344 (588)
+||.|.-...
T Consensus 299 l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~ 378 (822)
T COG0653 299 LFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE 378 (822)
T ss_pred HhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh
Confidence 1111111111
Q ss_pred HHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCCcE
Q 007829 345 QNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGVEA 421 (588)
Q Consensus 345 ~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~~~ 421 (588)
.+|...+....+.+....+ ....+ .....|.....|+..++..+. ..+.|+||-..++...+.+++.|.+.|++.
T Consensus 379 ~EF~~iY~l~vv~iPTnrp-~~R~D-~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 379 EEFDVIYGLDVVVIPTNRP-IIRLD-EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred hhhhhccCCceeeccCCCc-ccCCC-CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCc
Confidence 1111111111111111111 01111 112234455677777776654 478899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcce-----------EEecCCCCChhHHHHHhcccCCCCC
Q 007829 422 VAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH-----------VINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 422 ~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~-----------VI~~~~p~s~~~y~QriGRagR~g~ 490 (588)
.++...-. .++.-+-.+.--...|-|||++++||-||.--.. ||--.--.|-.---|.-||+||.|-
T Consensus 457 ~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 457 NVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred eeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 88887655 3333333333223458899999999999854332 3322222333344588999999999
Q ss_pred ccEEEEEEcCC
Q 007829 491 TGIATTFINKN 501 (588)
Q Consensus 491 ~g~~~~~~~~~ 501 (588)
+|.+-.|++-.
T Consensus 535 pG~S~F~lSle 545 (822)
T COG0653 535 PGSSRFYLSLE 545 (822)
T ss_pred cchhhhhhhhH
Confidence 99988888765
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.22 E-value=3e-11 Score=105.28 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|+--++-..+|+|||--.+--++...+. .+.++|||.|||.++..+.+.++.. .+++...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~----------~~~rvLvL~PTRvva~em~~aL~~~----------~~~~~t~ 63 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK----------RRLRVLVLAPTRVVAEEMYEALKGL----------PVRFHTN 63 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHTTTS----------SEEEEST
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH----------ccCeEEEecccHHHHHHHHHHHhcC----------CcccCce
Confidence 4445777899999997765556655555 5779999999999999887766543 2222211
Q ss_pred EcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhc--ceEEEEe
Q 007829 260 IGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ--RQTLLFS 337 (588)
Q Consensus 260 ~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~--~q~l~~S 337 (588)
.-+ . ....+.-|-|+|...+...+.. ...+.++++||+||||..-... -..+..+..+... ..+|++|
T Consensus 64 ~~~---~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mT 133 (148)
T PF07652_consen 64 ARM---R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMT 133 (148)
T ss_dssp TSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEE
T ss_pred eee---c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEe
Confidence 110 0 1124467889999998877766 5557899999999999854322 2333344444333 4799999
Q ss_pred eccchHHH
Q 007829 338 ATMPTKIQ 345 (588)
Q Consensus 338 AT~~~~i~ 345 (588)
||+|....
T Consensus 134 ATPPG~~~ 141 (148)
T PF07652_consen 134 ATPPGSED 141 (148)
T ss_dssp SS-TT---
T ss_pred CCCCCCCC
Confidence 99997643
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.21 E-value=8.4e-11 Score=119.57 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=92.9
Q ss_pred HHHHHHHHHh-------------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 169 IQVQGLPVVL-------------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 169 ~Q~~~i~~il-------------~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
+|.+++..++ ..+.+|++..+|+|||+..+..+. .+..... ......+|||||. .+..||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~-----~~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP-----QRGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT-----TSS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc-----cccccceeEeecc-chhhhh
Confidence 5777776653 346889999999999987655544 3332110 0111259999999 888999
Q ss_pred HHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH---cccCCCCCcceeeecCCcccc
Q 007829 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA---KKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~---~~~~~l~~~~~lIvDEah~l~ 312 (588)
..++.+++.+. .+++..+.|+..............+++|+|++.+..... ...+.-..+++||+||+|.+.
T Consensus 74 ~~E~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 74 KEEIEKWFDPD------SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp HHHHHHHSGT-------TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred hhhhccccccc------cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 99999997532 566666666541222222223457999999998871100 011112348899999999996
Q ss_pred cCCCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 313 DLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
+.. ......+..+. ....+++|||+.
T Consensus 148 ~~~--s~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 148 NKD--SKRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp TTT--SHHHHHHHCCC-ECEEEEE-SS-S
T ss_pred ccc--ccccccccccc-cceEEeeccccc
Confidence 544 44445555565 556788999974
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.06 E-value=2e-09 Score=108.28 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPV----VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~----il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++..+...... ..+.+++|.++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 479999995544 45789999999999999999999999776542110 023489999999999998877776
Q ss_pred HH
Q 007829 241 QF 242 (588)
Q Consensus 241 ~~ 242 (588)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.06 E-value=2e-09 Score=108.28 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPV----VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~----il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++..+...... ..+.+++|.++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 479999995544 45789999999999999999999999776542110 023489999999999998877776
Q ss_pred HH
Q 007829 241 QF 242 (588)
Q Consensus 241 ~~ 242 (588)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.01 E-value=2.7e-08 Score=114.98 Aligned_cols=294 Identities=18% Similarity=0.211 Sum_probs=163.9
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEE
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (588)
+.-+++=-||||||++....+- .+... ...|.++||+-.+.|-.|+.+.+..+..... ...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~--------~~~-- 334 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF--------NDP-- 334 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhh--------hcc--
Confidence 4689999999999987554443 33332 3688999999999999999999999965431 111
Q ss_pred cCcchHHHHHHHhcC-CcEEEeChHHHHHHHHccc--CCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 261 GGVDMRSQLEVVKRG-VHIVVATPGRLKDMLAKKK--MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 261 gg~~~~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~--~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+...-...+..+ ..|+|||-++|...+.... ..-..=-+||+|||||-- ++..-..+-..++. ...++||
T Consensus 335 ~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~~-a~~~gFT 410 (962)
T COG0610 335 KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALKK-AIFIGFT 410 (962)
T ss_pred cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhcc-ceEEEee
Confidence 223334444444434 3899999999987776541 112222368999999943 32333333333433 6689999
Q ss_pred eccchHHHHH-HHHhccCCeEEEecC---CCCcccceEEEe---------------eehh-------h------------
Q 007829 338 ATMPTKIQNF-ARSALVKPVTVNVGR---AGAANLDVIQEV---------------EYVK-------Q------------ 379 (588)
Q Consensus 338 AT~~~~i~~~-~~~~l~~p~~i~~~~---~~~~~~~v~~~~---------------~~~~-------~------------ 379 (588)
+||-..-..- ........+....-. .......+.... .... .
T Consensus 411 GTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 490 (962)
T COG0610 411 GTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKN 490 (962)
T ss_pred CCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhh
Confidence 9984321111 111111111110000 000000000000 0000 0
Q ss_pred -----------HHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcCCc----------------EEEE-----
Q 007829 380 -----------EAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKGVE----------------AVAV----- 424 (588)
Q Consensus 380 -----------~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g~~----------------~~~i----- 424 (588)
......+.... .....++.+.|.++..+..+.+........ ....
T Consensus 491 ~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 570 (962)
T COG0610 491 LEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKK 570 (962)
T ss_pred hhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhh
Confidence 00000011111 123457888888877555555443222000 0000
Q ss_pred --eCCCCHHHHHHHHHHH--hcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCC--C--CccEEEE
Q 007829 425 --HGGKDQEEREYAISSF--KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC--G--KTGIATT 496 (588)
Q Consensus 425 --hg~~~~~~r~~~~~~F--~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~--g--~~g~~~~ 496 (588)
|.. ....+......| .....++||-++++-.|+|-|.++++. .|-|.-....+|.+.|+.|. + ..|..+.
T Consensus 571 ~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVD 648 (962)
T COG0610 571 QSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVD 648 (962)
T ss_pred hhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEE
Confidence 111 223334444553 456789999999999999999888665 55667788899999999997 3 2355555
Q ss_pred EEc
Q 007829 497 FIN 499 (588)
Q Consensus 497 ~~~ 499 (588)
|+.
T Consensus 649 f~g 651 (962)
T COG0610 649 FRG 651 (962)
T ss_pred Ccc
Confidence 554
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.99 E-value=1.3e-08 Score=99.85 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=99.0
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|++.|.-++-.+..|+ |+.+.||-|||++..+|++..++. |..|-|++.+..||..=++.+..++
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 479999999998887777 999999999999999998877654 6789999999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcc------cCCCCCcceeeecCCcccc
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK-DMLAKK------KMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~-~~l~~~------~~~l~~~~~lIvDEah~l~ 312 (588)
..+ ++.+.++.++.+......... ++|+++|...|. |.|..+ ......+.++||||+|.++
T Consensus 143 ~~L------Glsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFL------GLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHT------T--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHh------hhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 988 999999999887655433333 689999999884 455432 1125778999999999875
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.69 E-value=2.8e-07 Score=103.95 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=89.9
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH-HhhcccccCCC--CceEE
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ-FLTPMRDAGYP--DLRTL 257 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~-~~~~~~~~~~~--~i~~~ 257 (588)
.++.+.|+||+|||.+|+-.++...... .-.+.||+||+.+.-..+...+.. .....-...+. .++..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 3788999999999999988877654331 345789999999999888866551 11111111122 24444
Q ss_pred EEEcCc-------chHHHHHHHhc-------CCcEEEeChHHHHHHHH-ccc----------CCCCCc----ceeeecCC
Q 007829 258 LCIGGV-------DMRSQLEVVKR-------GVHIVVATPGRLKDMLA-KKK----------MNLDNC----RYLTLDEA 308 (588)
Q Consensus 258 ~~~gg~-------~~~~~~~~l~~-------~~~IvV~Tp~~l~~~l~-~~~----------~~l~~~----~~lIvDEa 308 (588)
.+.++. .....+..+.. ..+|+|.|-+.|..-.. ... ..+..+ -+||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 22333333322 47999999988754211 100 111111 26999999
Q ss_pred cccccCCCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 309 DRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 309 h~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
|++...+ ..+..| ..+++.. ++.||||.+.
T Consensus 211 h~~~~~~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRDN--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCCCcch--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 9985532 344444 5566555 6779999986
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.62 E-value=2.5e-06 Score=91.44 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=90.2
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcC------------------CcEEEEeCCCCHHHHHHHHHHHhcC---CcEEEEEcC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKG------------------VEAVAVHGGKDQEEREYAISSFKAG---KKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g------------------~~~~~ihg~~~~~~r~~~~~~F~~g---~~~VLVaT~ 452 (588)
+.++|||..+....+.+.+.|.... .....+.|..+..+|++.+++|++- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4589999999999999999887652 2345678889999999999999863 235889999
Q ss_pred ccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEE
Q 007829 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~ 498 (588)
+...|||+-..+-+|.||.-|++.--.|.+-|+-|.|+...|+++=
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999999999999999999999999999999999988887764
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.53 E-value=1.2e-08 Score=112.57 Aligned_cols=132 Identities=22% Similarity=0.283 Sum_probs=101.3
Q ss_pred CCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 165 QPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 165 ~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
...|+|.+.+-.+. ...++++.+|||+|||++|.+.++..... .++.++++++|..+|+....+.+....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~---------~p~~kvvyIap~kalvker~~Dw~~r~ 997 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY---------YPGSKVVYIAPDKALVKERSDDWSKRD 997 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc---------CCCccEEEEcCCchhhcccccchhhhc
Confidence 45567777766555 45688999999999999999998876544 356889999999999988777777654
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--ccCCCCCcceeeecCCcccccC
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--KKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~--~~~~l~~~~~lIvDEah~l~~~ 314 (588)
. .++++++-+.|..... ...+ ..++++|+||+++-..... +...+.++..+|+||.|++.+.
T Consensus 998 ~------~~g~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 998 E------LPGIKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred c------cCCceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 3 2478888888876554 2222 3479999999999777763 4556889999999999998754
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.50 E-value=2.2e-06 Score=96.84 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=55.9
Q ss_pred CcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 276 VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 276 ~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
..|+++||..|..-+..+.+.++.+..|||||||++....-+..+..+++.-++..-+.+|||.+.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 479999999998777788899999999999999999877666777777777777777889999974
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.49 E-value=1.1e-05 Score=88.22 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=42.5
Q ss_pred CCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCC
Q 007829 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 443 g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~ 488 (588)
...+.+.+-.++-+|.|=|+|=.+.-.....|...=.|.+||.-|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4578999999999999999999999999899999999999999995
No 175
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.43 E-value=5.1e-07 Score=99.66 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=91.7
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-cEE-EEEcCccccCCCCCCcceEEecCCC
Q 007829 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK-KDV-LVATDVASKGLDFPDIQHVINYDMP 472 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~-~~V-LVaT~~~~~GlDip~v~~VI~~~~p 472 (588)
++++||+.-...+..+...|...++....+.|.|+...|...+..|..+. ..| +++.-+.+.|+++..+.||+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 49999999999999999999999999999999999999999999999553 333 5677888999999999999999999
Q ss_pred CChhHHHHHhcccCCCCCccEEEE
Q 007829 473 AEIENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 473 ~s~~~y~QriGRagR~g~~g~~~~ 496 (588)
|++..--|.+-|+.|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998876655
No 176
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.38 E-value=1.9e-06 Score=93.84 Aligned_cols=301 Identities=19% Similarity=0.185 Sum_probs=175.1
Q ss_pred HHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH-hhcccccCC
Q 007829 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF-LTPMRDAGY 251 (588)
Q Consensus 173 ~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~-~~~~~~~~~ 251 (588)
.+..+...+-+++-+.||.|||.-+.--+|..++.+.. +...-+.+--|++..+.-+.+.+.+- +...
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~------g~~~na~v~qprrisaisiaerva~er~e~~----- 454 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN------GASFNAVVSQPRRISAISLAERVANERGEEV----- 454 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc------cccccceeccccccchHHHHHHHHHhhHHhh-----
Confidence 33444455667788999999999988888887776431 12223566678888888777665542 2111
Q ss_pred CCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh----
Q 007829 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF---- 327 (588)
Q Consensus 252 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~---- 327 (588)
+-.+|-.......... .---|+.||-+-++.++... +..+.++|+||.|..--.+ ..+..+++-+
T Consensus 455 -----g~tvgy~vRf~Sa~pr-pyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~~ty 523 (1282)
T KOG0921|consen 455 -----GETCGYNVRFDSATPR-PYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMISTY 523 (1282)
T ss_pred -----cccccccccccccccc-cccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhhccc
Confidence 1111111111100001 11268999999998887754 4567789999999754322 2223332222
Q ss_pred ---------------------hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCC------------------Cccc
Q 007829 328 ---------------------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG------------------AANL 368 (588)
Q Consensus 328 ---------------------~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~------------------~~~~ 368 (588)
..-.|+.+.++|+|-. .|....+..+.....+... ..+.
T Consensus 524 ~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~ 601 (1282)
T KOG0921|consen 524 RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNM 601 (1282)
T ss_pred hhhhhhhhhcccchhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccc
Confidence 2223444445554432 2222222211111111000 0011
Q ss_pred ceEEEeeeh----------hhHHHHHHHHHHhh------cCCCCEEEEeCccccHHHHHHHHHHc-------CCcEEEEe
Q 007829 369 DVIQEVEYV----------KQEAKIVYLLECLQ------KTPPPVLIFCENKADVDDIHEYLLLK-------GVEAVAVH 425 (588)
Q Consensus 369 ~v~~~~~~~----------~~~~k~~~ll~~l~------~~~~~viIF~~s~~~~~~l~~~L~~~-------g~~~~~ih 425 (588)
+....-.+. ...+....|++.+. ...+-++||.+--+....|..+|... .++..-.|
T Consensus 602 n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~H 681 (1282)
T KOG0921|consen 602 NILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLH 681 (1282)
T ss_pred ccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccch
Confidence 111111111 01111222333222 13567999999998888888888654 45677889
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC------------------CCChhHHHHHhcccCC
Q 007829 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PAEIENYVHRIGRTGR 487 (588)
Q Consensus 426 g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~QriGRagR 487 (588)
+.....+...+.+....|..+++++|.++..-+.+-++..||..+. ..+..+.+||.||+||
T Consensus 682 sq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~gr 761 (1282)
T KOG0921|consen 682 SQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGR 761 (1282)
T ss_pred hhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCce
Confidence 9988888888888888899999999999998888888777774432 2356678999999998
Q ss_pred CCCccEEEEEE
Q 007829 488 CGKTGIATTFI 498 (588)
Q Consensus 488 ~g~~g~~~~~~ 498 (588)
. +.|.|..++
T Consensus 762 v-R~G~~f~lc 771 (1282)
T KOG0921|consen 762 V-RPGFCFHLC 771 (1282)
T ss_pred e-ccccccccc
Confidence 7 566666665
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.29 E-value=2.5e-06 Score=80.58 Aligned_cols=146 Identities=21% Similarity=0.314 Sum_probs=76.3
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH-------H
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ-------T 235 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q-------~ 235 (588)
+...++.|..++..+++..-+++.+|.|+|||+.++..++..+.. +.-.+.+|+-|+.+.... .
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---------g~~~kiii~Rp~v~~~~~lGflpG~~ 72 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---------GEYDKIIITRPPVEAGEDLGFLPGDL 72 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---------TS-SEEEEEE-S--TT----SS----
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---------CCCcEEEEEecCCCCccccccCCCCH
Confidence 345688999999999988888999999999999999888887765 345678888888753111 1
Q ss_pred HHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC
Q 007829 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG 315 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~ 315 (588)
.+.+.-++.++...-. .+ .+ ......+.....|-+.++..+ . ...+++ .+||+|||..+..
T Consensus 73 ~eK~~p~~~p~~d~l~-~~-----~~----~~~~~~~~~~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~t~-- 133 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALE-EL-----FG----KEKLEELIQNGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNLTP-- 133 (205)
T ss_dssp -----TTTHHHHHHHT-TT-----S-----TTCHHHHHHTTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG--H--
T ss_pred HHHHHHHHHHHHHHHH-HH-----hC----hHhHHHHhhcCeEEEEehhhh----c--Cccccc-eEEEEecccCCCH--
Confidence 1222222211110000 00 01 111222223345666654222 1 222332 7899999999753
Q ss_pred CHHHHHHHHHhhhhcceEEEEee
Q 007829 316 FEDDIREVFDHFKAQRQTLLFSA 338 (588)
Q Consensus 316 ~~~~i~~i~~~~~~~~q~l~~SA 338 (588)
.+++.++.++....+++++--
T Consensus 134 --~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 134 --EELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp --HHHHHHHTTB-TT-EEEEEE-
T ss_pred --HHHHHHHcccCCCcEEEEecC
Confidence 789999999988887776543
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.28 E-value=1.3e-06 Score=80.65 Aligned_cols=113 Identities=23% Similarity=0.333 Sum_probs=77.6
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC--ccccCCCCCC
Q 007829 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGV--EAVAVHGGKDQEEREYAISSFKAGKKDVLVATD--VASKGLDFPD 462 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~--~~~~GlDip~ 462 (588)
.+.+...++.+|||++|....+.+.+.+...+. ....+.. +..++..+++.|++++..||+|+. .+++|+|+|+
T Consensus 2 ~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 2 LELISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred hHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 345566778999999999999999999876532 1223333 245778899999999999999998 9999999997
Q ss_pred --cceEEecCCCCC-h-----------------------------hHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 463 --IQHVINYDMPAE-I-----------------------------ENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 463 --v~~VI~~~~p~s-~-----------------------------~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
++.||..++|.. + ....|.+||+-|....--+++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 778999998841 1 11248899999987665555666544
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.22 E-value=1.3e-05 Score=77.96 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~d-vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
++.+.|..|+..+++... .++.||.|+|||.+.. .++..+..... ......+.++|+++||...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 9999999999995433 33333311000 00124678899999999999999988887
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=1.2e-05 Score=76.38 Aligned_cols=123 Identities=16% Similarity=0.195 Sum_probs=70.7
Q ss_pred CCcHHHHHHHHHHhcC-CC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVLSG-RD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g-~d-vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
++++-|.+++..++.. .. +++.++.|+|||.+ +..+...+.. .+..+++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~--l~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~--- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL--LKALAEALEA---------AGKRVIGLAPTNKAAKELREKT--- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH--HHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH--HHHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhh---
Confidence 3688999999999744 33 56679999999954 3334333332 4678999999998888755442
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc----CCCCCcceeeecCCcccccCCCHH
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK----MNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~----~~l~~~~~lIvDEah~l~~~~~~~ 318 (588)
++.+ .|-.+++....... ..+...++||||||-.+.. .
T Consensus 67 ----------~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~ 108 (196)
T PF13604_consen 67 ----------GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----R 108 (196)
T ss_dssp ----------TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----H
T ss_pred ----------Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH----H
Confidence 1111 12111111100100 1156667999999998753 5
Q ss_pred HHHHHHHhhhh-cceEEEEeec
Q 007829 319 DIREVFDHFKA-QRQTLLFSAT 339 (588)
Q Consensus 319 ~i~~i~~~~~~-~~q~l~~SAT 339 (588)
.+..++..++. ..++|++-=+
T Consensus 109 ~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 109 QLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHHHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHHHHHhcCCEEEEECCc
Confidence 67777777765 5566665544
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.13 E-value=2.4e-05 Score=77.32 Aligned_cols=172 Identities=15% Similarity=0.123 Sum_probs=107.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007829 147 DMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL----------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 147 ~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il----------~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
.+.||+.+.. .| .++..|.+++-.+- .+.-.++-..||.||--...-.++..++.
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------- 89 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------- 89 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------
Confidence 3467766554 23 57889998886654 23567788899999986655555555544
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc---
Q 007829 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK--- 293 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~--- 293 (588)
...++|++..+..|-....+.+..+... .+.+..+.. ..... ...+ .-.|+++|+..|...-.++
T Consensus 90 -Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-------~i~v~~l~~-~~~~~-~~~~--~~GvlF~TYs~L~~~~~~~~~~ 157 (303)
T PF13872_consen 90 -GRKRAVWVSVSNDLKYDAERDLRDIGAD-------NIPVHPLNK-FKYGD-IIRL--KEGVLFSTYSTLISESQSGGKY 157 (303)
T ss_pred -CCCceEEEECChhhhhHHHHHHHHhCCC-------cccceechh-hccCc-CCCC--CCCccchhHHHHHhHHhccCCc
Confidence 2457999999999999999989887532 233322221 00000 0111 2469999999887665321
Q ss_pred cCCCC--------C-cceeeecCCcccccCCCH--------HHHHHHHHhhhhcceEEEEeeccchHHHH
Q 007829 294 KMNLD--------N-CRYLTLDEADRLVDLGFE--------DDIREVFDHFKAQRQTLLFSATMPTKIQN 346 (588)
Q Consensus 294 ~~~l~--------~-~~~lIvDEah~l~~~~~~--------~~i~~i~~~~~~~~q~l~~SAT~~~~i~~ 346 (588)
...+. + =.+|||||||.+.+..-. ..+..+-+.++..+ ++.+|||-..+..+
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~N 226 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRN 226 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCce
Confidence 11111 1 148999999999876421 23444555565444 99999998665443
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.05 E-value=8.8e-05 Score=78.95 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=63.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 156 KKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 156 ~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
+.+..-++.++..-|..|+..+|+..=.|+.+|.|+|||.+..-.+++.+.. .+..+|+++|+.-.+.|+
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----------~~~~VLvcApSNiAVDqL 470 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----------HAGPVLVCAPSNIAVDQL 470 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----------cCCceEEEcccchhHHHH
Confidence 3555568889999999999999999999999999999998765555544433 355689999999999999
Q ss_pred HHHHHHH
Q 007829 236 YEVVEQF 242 (588)
Q Consensus 236 ~~~~~~~ 242 (588)
.+.+.+.
T Consensus 471 aeKIh~t 477 (935)
T KOG1802|consen 471 AEKIHKT 477 (935)
T ss_pred HHHHHhc
Confidence 9988876
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.97 E-value=7.1e-05 Score=71.35 Aligned_cols=155 Identities=24% Similarity=0.382 Sum_probs=100.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLS---GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~---g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
.+|+.+..|..++=.+... + -.++.|.+....+.+ |.|.+..+-+|.|||.+ ++|++..++.+ ..
T Consensus 3 ~~w~p~~~P~wLl~E~e~~-i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---------g~ 70 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIESN-I-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---------GS 70 (229)
T ss_pred CCCCchhChHHHHHHHHcC-c-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---------CC
Confidence 3677777888887777543 3 579999999988884 68999999999999966 78888877763 23
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH----HH----HHHhcCCcEEEeChHHHHHHHH
Q 007829 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS----QL----EVVKRGVHIVVATPGRLKDMLA 291 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~----~~----~~l~~~~~IvV~Tp~~l~~~l~ 291 (588)
.-+.+++|. +|..|+...+...+..+-.. .+...-+.-.+.... .. ......-.|+++||+.++.+..
T Consensus 71 ~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r---~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L 146 (229)
T PF12340_consen 71 RLVRVIVPK-ALLEQMRQMLRSRLGGLLNR---RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKL 146 (229)
T ss_pred cEEEEEcCH-HHHHHHHHHHHHHHHHHhCC---eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHH
Confidence 456677775 79999999988776554211 222222222322211 11 1222345799999998865532
Q ss_pred cc-------c-----------CCCCCcceeeecCCccccc
Q 007829 292 KK-------K-----------MNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 292 ~~-------~-----------~~l~~~~~lIvDEah~l~~ 313 (588)
.. . ..+.....=|+||+|..+.
T Consensus 147 ~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 147 KGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 21 0 0123334578999998764
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=5.5e-05 Score=73.49 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=84.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH-------H
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR-------Q 234 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~-------Q 234 (588)
++...+..|...+..+.++..+++.+++|+|||+.++..++..+... .-.+++|.=|+.+... .
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---------~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---------DVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---------CeeEEEEeCCCCCchhhhCcCCCC
Confidence 56667889999999998888888999999999988777666555431 2345566666654221 2
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-h-cCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-K-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~-~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
..+.+.-|+.++.+ .+.. +.|. .....+ . ..-.|-|+.. .++.... +. -.+||+|||+.+.
T Consensus 127 ~~eK~~p~~~pi~D----~L~~--~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt--l~-~~~vIvDEaqn~~ 189 (262)
T PRK10536 127 IAEKFAPYFRPVYD----VLVR--RLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT--FE-NAVVILDEAQNVT 189 (262)
T ss_pred HHHHHHHHHHHHHH----HHHH--HhCh----HHHHHHHHhccCcEEEecH----HHhcCCc--cc-CCEEEEechhcCC
Confidence 23333333333211 0000 0111 111111 1 1124555553 2222222 32 3799999999975
Q ss_pred cCCCHHHHHHHHHhhhhcceEEE
Q 007829 313 DLGFEDDIREVFDHFKAQRQTLL 335 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~ 335 (588)
- .++..++..++...++|+
T Consensus 190 ~----~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 190 A----AQMKMFLTRLGENVTVIV 208 (262)
T ss_pred H----HHHHHHHhhcCCCCEEEE
Confidence 3 788888888887776655
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.82 E-value=8.5e-05 Score=77.39 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=67.2
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcC
Q 007829 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg 262 (588)
++|.|..|||||++++-.+... .. ...+..+++++++..|...+...+..-...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l-~~--------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL-QN--------SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh-hc--------cccCCceEEEEecchHHHHHHHHHhhhccc-----------------
Confidence 6778999999998765443332 11 135778999999999998877777654200
Q ss_pred cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC-------CHHHHHHHHHh
Q 007829 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-------FEDDIREVFDH 326 (588)
Q Consensus 263 ~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~-------~~~~i~~i~~~ 326 (588)
......+..|..+...+.........+++|||||||++...+ ..+.+..+++.
T Consensus 58 -----------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233344444433333233456788999999999998732 23556666555
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.75 E-value=9.2e-05 Score=78.50 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~d-vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..+.+-|.+|+..+.+.++ .++.||.|+|||......+.+.+ . .+.++||.+||..-+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k----------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-K----------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-H----------cCCeEEEEcCchHHHHHHHHHhc
Confidence 4568899999999998866 46669999999977655554443 3 46899999999999999888644
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.71 E-value=0.00032 Score=78.36 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
..+++.|..|+..++.. ..+++.||+|+|||.+.. .++..+.. .|+++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 667888999999996543 33333333 366899999999999998888876
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.53 E-value=0.00052 Score=75.76 Aligned_cols=78 Identities=27% Similarity=0.361 Sum_probs=51.4
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhc--------CCcEEEEEcCccccCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKG-------VEAVAVHGGKDQEEREYAISSFKA--------GKKDVLVATDVASKGL 458 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g-------~~~~~ihg~~~~~~r~~~~~~F~~--------g~~~VLVaT~~~~~Gl 458 (588)
+..+|||.++....+.+...+...+ +.- .+-.-.+..+=.+++..|.+ |..-+.||-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 4579999999998888876665432 222 22222233344455555543 3335667888899999
Q ss_pred CCCC--cceEEecCCC
Q 007829 459 DFPD--IQHVINYDMP 472 (588)
Q Consensus 459 Dip~--v~~VI~~~~p 472 (588)
|+.+ .+.||..++|
T Consensus 640 DFsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLP 655 (945)
T ss_pred CccccCCceeEEecCC
Confidence 9987 6679988887
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.52 E-value=0.00091 Score=75.94 Aligned_cols=126 Identities=21% Similarity=0.160 Sum_probs=77.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++.|.+|+..+..++-+++.++.|+|||.+. -.+..++... +....+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l--~~i~~~~~~~-------~~~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT--RAIIELAEEL-------GGLLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH--HHHHHHHHHc-------CCCceEEEEeCchHHHHHHHHhc----
Confidence 4689999999999999899999999999999543 3333333321 11156888999988776543221
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH-----cccCCCCCcceeeecCCcccccCCCHH
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA-----KKKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~-----~~~~~l~~~~~lIvDEah~l~~~~~~~ 318 (588)
+... .|-.+|+.... .........++||||||+.+.. .
T Consensus 389 ---------g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~ 431 (720)
T TIGR01448 389 ---------GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----W 431 (720)
T ss_pred ---------CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----H
Confidence 1110 01111111000 0001124578999999998743 4
Q ss_pred HHHHHHHhhhhcceEEEEeec
Q 007829 319 DIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 319 ~i~~i~~~~~~~~q~l~~SAT 339 (588)
.+..+++.++...++|++--+
T Consensus 432 ~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 432 LALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHHHHhCCCCCEEEEECcc
Confidence 567777788877787775444
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.50 E-value=0.00057 Score=53.89 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=39.9
Q ss_pred HHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 173 GLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 173 ~i~~il~g~d-vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
++...+++.+ +++.+|.|||||...+-.+...+.... ..+..+++++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-------~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-------DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-------CCCCeEEEECCCHHHHHHHHHHH
Confidence 3443344444 555999999999665444443332111 12678999999999999988877
No 191
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.49 E-value=0.0019 Score=74.88 Aligned_cols=126 Identities=21% Similarity=0.208 Sum_probs=77.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~d-vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.|+ .+++-|.+++..++++++ +++.++.|+|||.+ +-.+..++.. .|..++.++||--.|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~---------~G~~V~~~ApTGkAA~~L~e-- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA---------AGYEVRGAALSGIAAENLEG-- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------cCCeEEEecCcHHHHHHHhh--
Confidence 354 689999999999998765 67889999999954 3334433332 47889999999776654322
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHH
Q 007829 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~ 319 (588)
- . ++.. .|-.+|..-...+...+...++|||||+-.+.. ..
T Consensus 409 --~---t------Gi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~ 449 (988)
T PRK13889 409 --G---S------GIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQ 449 (988)
T ss_pred --c---c------Ccch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HH
Confidence 1 0 1111 121222111112233466778999999997643 45
Q ss_pred HHHHHHhh-hhcceEEEEeec
Q 007829 320 IREVFDHF-KAQRQTLLFSAT 339 (588)
Q Consensus 320 i~~i~~~~-~~~~q~l~~SAT 339 (588)
+..+++.. +...++|++-=+
T Consensus 450 m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 450 LERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred HHHHHHhhhhCCCEEEEECCH
Confidence 55666543 345566665444
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.48 E-value=0.001 Score=73.61 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
.++|..|+-..+..+-+++.++.|+|||.+. ..++..+.... ......+++++||.--|..+.+.+......+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~------~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA------DGERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc------CCCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 5899999999999999999999999999553 22233332210 1124578899999999988887776543322
Q ss_pred cccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH------cccCCCCCcceeeecCCcccccCCCHHHH
Q 007829 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA------KKKMNLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~------~~~~~l~~~~~lIvDEah~l~~~~~~~~i 320 (588)
++ . . .+......-..|-.+|+.... .+..+.-.+++||||||-.+- ...+
T Consensus 227 ------~~---------~--~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm 282 (615)
T PRK10875 227 ------PL---------T--D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMM 282 (615)
T ss_pred ------cc---------c--h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHH
Confidence 10 0 0 000001111233333322211 111233456899999998763 2667
Q ss_pred HHHHHhhhhcceEEEEeec
Q 007829 321 REVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT 339 (588)
..+++.+++..++|++-=.
T Consensus 283 ~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 283 ARLIDALPPHARVIFLGDR 301 (615)
T ss_pred HHHHHhcccCCEEEEecch
Confidence 7888888888888776544
No 193
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.42 E-value=0.0029 Score=72.12 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 165 QPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.+++-|..|+..++.+ +-+++.++.|+|||.+ +-.+..++.. .|..+++++||--.|..+.+. .
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~---------~g~~V~~~ApTg~Aa~~L~~~---~- 416 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA---------AGYRVIGAALSGKAAEGLQAE---S- 416 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh---------CCCeEEEEeCcHHHHHHHHhc---c-
Confidence 5899999999999874 5678889999999944 4444444432 477899999997766554321 0
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHH
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i 323 (588)
++... |-.++..-.......+...++||||||-.+.. ..+..+
T Consensus 417 ---------g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~L 459 (744)
T TIGR02768 417 ---------GIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARV 459 (744)
T ss_pred ---------CCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHH
Confidence 22111 11112111122233456789999999998753 344555
Q ss_pred HHhh-hhcceEEEEe
Q 007829 324 FDHF-KAQRQTLLFS 337 (588)
Q Consensus 324 ~~~~-~~~~q~l~~S 337 (588)
+... ....++|++-
T Consensus 460 l~~~~~~~~kliLVG 474 (744)
T TIGR02768 460 LKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHhcCCEEEEEC
Confidence 5533 3455566554
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.40 E-value=0.0021 Score=70.98 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
..+|..|+..++.++-+++.|+.|+|||.+. ..++..+.... + ....+++++.+||---|..+.+.+......+
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~---~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQS---P--KQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc---c--ccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 3799999999999999999999999999553 22333332211 0 0113579999999988888777666543222
Q ss_pred cccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc------ccCCCCCcceeeecCCcccccCCCHHHH
Q 007829 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK------KKMNLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~------~~~~l~~~~~lIvDEah~l~~~~~~~~i 320 (588)
.. . .. +.....+-..|-.+|+..... ...+...+++||||||=.+.. ..+
T Consensus 221 ------~~---------~-~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~ 276 (586)
T TIGR01447 221 ------AA---------A-EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLM 276 (586)
T ss_pred ------cc---------c-hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHH
Confidence 00 0 00 000111223444444322111 112234678999999987642 567
Q ss_pred HHHHHhhhhcceEEEEeec
Q 007829 321 REVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT 339 (588)
..+++.++...++|++-=.
T Consensus 277 ~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 277 AKLLKALPPNTKLILLGDK 295 (586)
T ss_pred HHHHHhcCCCCEEEEECCh
Confidence 7888888888887775444
No 195
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.38 E-value=0.0012 Score=58.93 Aligned_cols=66 Identities=24% Similarity=0.459 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCC------cEEEEeCCCCHHHHHHHHHHHhcCCc-EEEEEcCccccCCCCCC--cceEEecCCC
Q 007829 407 VDDIHEYLLLKGV------EAVAVHGGKDQEEREYAISSFKAGKK-DVLVATDVASKGLDFPD--IQHVINYDMP 472 (588)
Q Consensus 407 ~~~l~~~L~~~g~------~~~~ihg~~~~~~r~~~~~~F~~g~~-~VLVaT~~~~~GlDip~--v~~VI~~~~p 472 (588)
.+.++..+...+. ....+.-+.+..+...+++.|+.... .||++|..+++|+|+|+ ++.||..++|
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3445555554443 23445555666677889999987643 79999988999999998 5789988877
No 196
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.28 E-value=0.00065 Score=66.16 Aligned_cols=87 Identities=26% Similarity=0.393 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc-chHHHHHHHhc-CCcEEEeChHHHHHHHHccc
Q 007829 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV-DMRSQLEVVKR-GVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~~ 294 (588)
...|.+||||.+-.-|..+.+.+..|-.. +..++-+..-+ ...++...+.+ .++|.||||+|+..++..+.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-------~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~ 196 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-------DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA 196 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-------CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC
Confidence 46799999999988888888888887311 22333333333 56778888874 68999999999999999999
Q ss_pred CCCCCcceeeecCCcc
Q 007829 295 MNLDNCRYLTLDEADR 310 (588)
Q Consensus 295 ~~l~~~~~lIvDEah~ 310 (588)
+.++.+.+||||--|.
T Consensus 197 L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 197 LSLSNLKRIVLDWSYL 212 (252)
T ss_pred CCcccCeEEEEcCCcc
Confidence 9999999999998765
No 197
>PRK08181 transposase; Validated
Probab=97.27 E-value=0.0017 Score=64.49 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=28.2
Q ss_pred CCCcceeeecCCcccccCCC-HHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 297 LDNCRYLTLDEADRLVDLGF-EDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~-~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
+..+++|||||.+......+ ...+..+++..-....+|+.|-..+...
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 35678999999998654322 2234455554333445666666655543
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.23 E-value=0.0027 Score=63.87 Aligned_cols=142 Identities=15% Similarity=0.250 Sum_probs=85.9
Q ss_pred CCCCCcHHHHHHHHHHhcCC--CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH----
Q 007829 162 GIVQPTPIQVQGLPVVLSGR--DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT---- 235 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~--dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~---- 235 (588)
|+..-...|.-|+..++... =|.+.++.|||||+.++.+.+...+... ...++||-=|+..+-+.+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--------~y~KiiVtRp~vpvG~dIGfLP 296 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--------RYRKIIVTRPTVPVGEDIGFLP 296 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--------hhceEEEecCCcCcccccCcCC
Confidence 77666778888898888553 4667799999999999999998887753 345667777776554321
Q ss_pred ---HHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc----------ce
Q 007829 236 ---YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC----------RY 302 (588)
Q Consensus 236 ---~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~----------~~ 302 (588)
.+.+.-|+. +..+....+....+ ++-+.|..++.+..+....+ .+
T Consensus 297 G~eEeKm~PWmq-------------------~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~F 354 (436)
T COG1875 297 GTEEEKMGPWMQ-------------------AIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSF 354 (436)
T ss_pred CchhhhccchHH-------------------HHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccce
Confidence 011111111 11111222211111 12333434444433322211 48
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
||+|||+.+. ..++..|+.+.....+++++.
T Consensus 355 iIIDEaQNLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 355 IIIDEAQNLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred EEEehhhccC----HHHHHHHHHhccCCCEEEEcC
Confidence 9999999985 378999999998888777743
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.23 E-value=0.001 Score=62.75 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=32.2
Q ss_pred eChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeecc
Q 007829 281 ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 281 ~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
..+..+...+.. .-..+++|||||+|.+. .+++..+++.+......+.+|+-.
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 444455454433 23567899999998752 245666777755555556655543
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.19 E-value=0.0021 Score=71.82 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=93.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007829 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~d-vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
||...+-....+.|.+.+.. +..+..-|++|+-.++..+| .++.|=.|+|||.+....+ ..+..
T Consensus 647 pP~f~~~~~~~~~p~~~~~~----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~---------- 711 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKII----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA---------- 711 (1100)
T ss_pred CchhhcccccccCchhhHHH----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH----------
Confidence 33333444455666666542 34678899999999997776 5666888999996543322 22222
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCC-----CCceEEEEEcCcchH--HHHHHHhcCCcEEEeChHHHHHHH
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY-----PDLRTLLCIGGVDMR--SQLEVVKRGVHIVVATPGRLKDML 290 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~-----~~i~~~~~~gg~~~~--~~~~~l~~~~~IvV~Tp~~l~~~l 290 (588)
.|.++|+.+=|...+..+.-.+..+.-.+-..|. |.++-.+...+.+.. +........+.||.+|--.+.+.+
T Consensus 712 ~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl 791 (1100)
T KOG1805|consen 712 LGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL 791 (1100)
T ss_pred cCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh
Confidence 5888999999988888777767666332211111 111111111122111 122233456788888854444433
Q ss_pred HcccCCCCCcceeeecCCccccc
Q 007829 291 AKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 291 ~~~~~~l~~~~~lIvDEah~l~~ 313 (588)
+..+.++|+|||||-.+..
T Consensus 792 ----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 792 ----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ----hhccccCEEEEcccccccc
Confidence 3356689999999998764
No 201
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.18 E-value=0.0018 Score=57.86 Aligned_cols=94 Identities=27% Similarity=0.398 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCC---cEEEEeCCCCHHHHHHHHHHHhcCCc---EEEEEcCc--cccCCCCCC--cceEEecCCCC---
Q 007829 407 VDDIHEYLLLKGV---EAVAVHGGKDQEEREYAISSFKAGKK---DVLVATDV--ASKGLDFPD--IQHVINYDMPA--- 473 (588)
Q Consensus 407 ~~~l~~~L~~~g~---~~~~ihg~~~~~~r~~~~~~F~~g~~---~VLVaT~~--~~~GlDip~--v~~VI~~~~p~--- 473 (588)
.+.+++.+...+. ...++.-+.+..+...+++.|++... .||+++.- +++|||+|+ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3455566655443 22333333444455788888987543 68888876 999999998 67899888873
Q ss_pred -Ch---------------------------hHHHHHhcccCCCCCccEEEEEEcC
Q 007829 474 -EI---------------------------ENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 474 -s~---------------------------~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
++ ....|.+||+-|....--++++++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 11 1234888999998655445555543
No 202
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.18 E-value=2.3e-05 Score=85.78 Aligned_cols=69 Identities=28% Similarity=0.373 Sum_probs=60.2
Q ss_pred HHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc---CCcEEEEEcCccccC
Q 007829 388 ECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA---GKKDVLVATDVASKG 457 (588)
Q Consensus 388 ~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~---g~~~VLVaT~~~~~G 457 (588)
..++..+++|+||..-....+.+.+++...+ ....+.|.....+|..+++.|+. ....+|.+|.+.+.|
T Consensus 625 ~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 625 KKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3445578999999999999999999999999 89999999999999999999993 356689999987765
No 203
>PRK06526 transposase; Provisional
Probab=97.11 E-value=0.00078 Score=66.45 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=20.1
Q ss_pred HHhcCCCEEEEecCCchHhHHHHHHH
Q 007829 176 VVLSGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 176 ~il~g~dvi~~a~TGsGKTl~~~lp~ 201 (588)
.+-.+++++++||+|+|||......+
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHH
Confidence 34477899999999999996654433
No 204
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.09 E-value=0.0021 Score=63.51 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=61.6
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCC--------cceEEecCCCCChhHHHHHhcccCCCCCc-cEEEEEEcCCC--C
Q 007829 435 YAISSFKAGKKDVLVATDVASKGLDFPD--------IQHVINYDMPAEIENYVHRIGRTGRCGKT-GIATTFINKNQ--S 503 (588)
Q Consensus 435 ~~~~~F~~g~~~VLVaT~~~~~GlDip~--------v~~VI~~~~p~s~~~y~QriGRagR~g~~-g~~~~~~~~~~--~ 503 (588)
...+.|.+|+.+|+|.|++++.|+.+.+ -++-|...+|||....+|..||+.|.|+. ...+.++..+. +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4577899999999999999999999864 34677889999999999999999999984 44466555542 3
Q ss_pred hhHHHHHHHHHH
Q 007829 504 ETTLLDLKHLLQ 515 (588)
Q Consensus 504 ~~~~~~l~~~l~ 515 (588)
..++..+.+-|.
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.03 E-value=0.0025 Score=55.91 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=13.6
Q ss_pred cCCCEEEEecCCchHhHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp 200 (588)
+++-+++.|++|+|||.+....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHH
Confidence 4567899999999999664443
No 206
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.01 E-value=0.012 Score=68.80 Aligned_cols=137 Identities=16% Similarity=0.106 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLS-GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~-g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
+++..+......+ ..+++-|.+++..+.+ ++=++++|+.|+|||.+ +-.+..+++. .|..++.++||
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~---------~G~~V~g~ApT 434 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA---------AGYRVVGGALA 434 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------cCCeEEEEcCc
Confidence 4455555444444 3699999999998865 45578889999999944 4444444442 57889999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCC
Q 007829 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEa 308 (588)
---|..+.+ -. ++.... -.+|..-.......+...++||||||
T Consensus 435 gkAA~~L~e----~~---------Gi~a~T------------------------Ias~ll~~~~~~~~l~~~~vlVIDEA 477 (1102)
T PRK13826 435 GKAAEGLEK----EA---------GIQSRT------------------------LSSWELRWNQGRDQLDNKTVFVLDEA 477 (1102)
T ss_pred HHHHHHHHH----hh---------CCCeee------------------------HHHHHhhhccCccCCCCCcEEEEECc
Confidence 776655432 11 222211 11111001112234566789999999
Q ss_pred cccccCCCHHHHHHHHHhhh-hcceEEEEeec
Q 007829 309 DRLVDLGFEDDIREVFDHFK-AQRQTLLFSAT 339 (588)
Q Consensus 309 h~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT 339 (588)
-.+.. ..+..+++... ...++|++.=+
T Consensus 478 sMv~~----~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 478 GMVAS----RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ccCCH----HHHHHHHHHHHhcCCEEEEECCH
Confidence 97643 55666676664 45667765544
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.97 E-value=0.0014 Score=68.52 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHH------hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 166 PTPIQVQGLPVV------LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 166 p~~~Q~~~i~~i------l~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
+++-|+.++..+ ..+.++.+.++-|+||| |++-++...+. ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~---------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLR---------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhc---------cccceEEEecchHHHHHhc
Confidence 567799998888 57889999999999999 55555554443 2567899999997776655
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.024 Score=59.34 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=68.8
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE-EEcCC-HHHHHHHHHHHHHHhhcccccCCCCceEE
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL-IVCPS-RELARQTYEVVEQFLTPMRDAGYPDLRTL 257 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L-il~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~i~~~ 257 (588)
++.+++++|||+|||.+..--+........ ..+..+. +-+-| |.-+.++ +..++..+ ++.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~-------~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l------gvpv~ 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD-------DKSLNIKIITIDNYRIGAKKQ---IQTYGDIM------GIPVK 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc-------cCCCeEEEEeccCccHHHHHH---HHHHhhcC------CcceE
Confidence 467889999999999775443332222110 1233443 33333 4444433 33443322 33221
Q ss_pred EEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC-CHHHHHHHHHhhhhc-ceEEE
Q 007829 258 LCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQ-RQTLL 335 (588)
Q Consensus 258 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~~-~q~l~ 335 (588)
++-++..+...+.. +..+++|++|++.+..... ....+..++...... .-++.
T Consensus 238 ---------------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LV 292 (388)
T PRK12723 238 ---------------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLA 292 (388)
T ss_pred ---------------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 12234444444432 3678999999999976321 123444555544433 34688
Q ss_pred Eeeccch-HHHHHHHHh
Q 007829 336 FSATMPT-KIQNFARSA 351 (588)
Q Consensus 336 ~SAT~~~-~i~~~~~~~ 351 (588)
+|||... .+.+....+
T Consensus 293 lsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 293 VSSTTKTSDVKEIFHQF 309 (388)
T ss_pred EcCCCCHHHHHHHHHHh
Confidence 8999864 344444444
No 209
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.94 E-value=0.0023 Score=65.21 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Q 007829 166 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTP 245 (588)
Q Consensus 166 p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~ 245 (588)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... .+...+|++++|+..|..+.+.+...+..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 47789999987 7788999999999999886665555444321 13456999999999999999999987654
Q ss_pred ccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCC--CcceeeecCCc
Q 007829 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLD--NCRYLTLDEAD 309 (588)
Q Consensus 246 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~--~~~~lIvDEah 309 (588)
.......+ .........-..+.|+|-..+...+.+...... .-.+-++|+..
T Consensus 72 ~~~~~~~~------------~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 72 EQQESSDN------------ERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCHCCTT-------------HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccc------------ccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 31110000 011112223357889998888654443221111 12356666666
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=96.85 E-value=0.017 Score=59.19 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=38.4
Q ss_pred CCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHh
Q 007829 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++|++|.+.++.. ......++.+.+...+..-++.++||......+.++.+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 3567999999999863 33445666776666677778889999877665555554
No 211
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.81 E-value=0.15 Score=64.19 Aligned_cols=235 Identities=14% Similarity=0.203 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+++-|.+++..++.. +=.++.++.|+|||.+ +-.+..+.+. .|..+++++||-.-+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~---------~G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE---------QGYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHhcch
Confidence 5889999999999865 4567789999999944 4444444442 5788999999988776655432211
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
.. ........+..+ .-..|..+|. .....+...++||||||-.+.. ..+..
T Consensus 498 A~-------------------Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~ 548 (1960)
T TIGR02760 498 AS-------------------TFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLK 548 (1960)
T ss_pred hh-------------------hHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHH
Confidence 00 001111111111 1122322332 2333456788999999997643 56677
Q ss_pred HHHhh-hhcceEEEEeecc------chHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hc
Q 007829 323 VFDHF-KAQRQTLLFSATM------PTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QK 392 (588)
Q Consensus 323 i~~~~-~~~~q~l~~SAT~------~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l---~~ 392 (588)
++... ....++|++.=+- +..+...+...- -+....... ......+ .+.-.....+...+.+.. ..
T Consensus 549 Ll~~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~g-v~t~~l~~i-~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 549 LIDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEGG-VTTYAWVDT-KQQKASV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred HHHHHhhcCCEEEEEcChhhcCccccchHHHHHHHCC-CcEEEeecc-cccCcce--eeeccCchHHHHHHHHHHHhccc
Confidence 77655 4567788765542 223333343321 121111111 1111111 111112222222233222 22
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cC------CcEEEEe-CCCCHHHHHHHHHHHhcCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLL----KG------VEAVAVH-GGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g------~~~~~ih-g~~~~~~r~~~~~~F~~g~ 444 (588)
....++|+..+..+...|....+. .| +....+. ..++..++... ..|+.|.
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 334689999998888887776643 22 2333333 35777777643 6666654
No 212
>PHA02533 17 large terminase protein; Provisional
Probab=96.55 E-value=0.017 Score=63.12 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=87.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|.|+|...+..+..++-.++..+=..|||.+....++..+.. ..+..+++++|+..-|..+++.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~---------~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF---------NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh---------CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5789999999887666666788888899997776545444332 2466899999999999999988887765
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHH
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~ 324 (588)
.+.....+.+ .... ...-.+..|+.|.+.|-. .....=.+..++++||+|.+.+ +...+..+.
T Consensus 130 ~~P~l~~~~i----~~~~----~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~ 192 (534)
T PHA02533 130 LLPDFLQPGI----VEWN----KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQ 192 (534)
T ss_pred hCHHHhhcce----eecC----ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHH
Confidence 4321100010 0000 000112355666555421 1111222456899999998755 223334444
Q ss_pred Hhhhh--cceEEEEeecc
Q 007829 325 DHFKA--QRQTLLFSATM 340 (588)
Q Consensus 325 ~~~~~--~~q~l~~SAT~ 340 (588)
..+.. ..+++.+|++.
T Consensus 193 p~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 193 PVISSGRSSKIIITSTPN 210 (534)
T ss_pred HHHHcCCCceEEEEECCC
Confidence 33332 23455555553
No 213
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.51 E-value=0.038 Score=59.98 Aligned_cols=106 Identities=21% Similarity=0.323 Sum_probs=74.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHh----cCCcEEEEEc--CccccCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGV-------EAVAVHGGKDQEEREYAISSFK----AGKKDVLVAT--DVASKGLD 459 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~-------~~~~ihg~~~~~~r~~~~~~F~----~g~~~VLVaT--~~~~~GlD 459 (588)
.++.+++|+++..-...+.+.+...|+ +.+.+-..-+ -..+++.|. .|.-.+|+|. .-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 578999999999999999999976654 2233333222 344555554 4555666654 67899999
Q ss_pred CCC--cceEEecCCCCC--------------------------------hhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 460 FPD--IQHVINYDMPAE--------------------------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 460 ip~--v~~VI~~~~p~s--------------------------------~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|.+ .+.||..++|.. +...-|-||||-|--+.-.++++++..
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 988 888999998832 112348899999986666677777554
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.50 E-value=0.026 Score=49.72 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.5
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
++.+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999543
No 215
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.50 E-value=0.007 Score=69.53 Aligned_cols=157 Identities=19% Similarity=0.139 Sum_probs=93.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhccc-------CCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCC
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMM-------MPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~-------~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~ 251 (588)
.|++++....+|+|||..-+...+......... ........+.+|||||. ++..||+.++..-+..
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~------ 445 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS------ 445 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc------
Confidence 457889999999999987655544331111000 00001123568999998 5667888888887643
Q ss_pred CCceEEEEEcCcchH-HHHHHHhcCCcEEEeChHHHHHHHHccc--------------CCCCC------cceeeecCCcc
Q 007829 252 PDLRTLLCIGGVDMR-SQLEVVKRGVHIVVATPGRLKDMLAKKK--------------MNLDN------CRYLTLDEADR 310 (588)
Q Consensus 252 ~~i~~~~~~gg~~~~-~~~~~l~~~~~IvV~Tp~~l~~~l~~~~--------------~~l~~------~~~lIvDEah~ 310 (588)
.+++..+.|=.... .+...+ -.+|||+||+..|..-+.... ..+.+ +=-||+|||..
T Consensus 446 -~lKv~~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM 523 (1394)
T KOG0298|consen 446 -LLKVLLYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM 523 (1394)
T ss_pred -cceEEEEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh
Confidence 46777777621110 011112 248999999999976654321 11110 11399999998
Q ss_pred cccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHH
Q 007829 311 LVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347 (588)
Q Consensus 311 l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~ 347 (588)
+-.. ..........++.. ..-++|+|+-..+.++
T Consensus 524 vess--sS~~a~M~~rL~~i-n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 524 VESS--SSAAAEMVRRLHAI-NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred hcch--HHHHHHHHHHhhhh-ceeeecCCchhhhhhh
Confidence 7653 25555555555433 3578899986665554
No 216
>PRK06921 hypothetical protein; Provisional
Probab=96.49 E-value=0.044 Score=54.54 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.++++.|++|+|||...
T Consensus 116 ~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3678999999999999553
No 217
>PRK05642 DNA replication initiation factor; Validated
Probab=96.41 E-value=0.019 Score=56.02 Aligned_cols=45 Identities=18% Similarity=0.436 Sum_probs=29.1
Q ss_pred CCcceeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 298 DNCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
..+++||+|++|.+... .+...+..+++.+......+++|++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 45678999999987543 3445567777666554345666666544
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.066 Score=55.57 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=39.5
Q ss_pred EeChHHHHHHHHcccCCCCCcceeeecCCcccccCC-CHHHHHHHHHhhhhcceEEEEeeccc-hHHHHHHHHhc
Q 007829 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQRQTLLFSATMP-TKIQNFARSAL 352 (588)
Q Consensus 280 V~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~~~q~l~~SAT~~-~~i~~~~~~~l 352 (588)
+.+|..+.+.+..-.. ..++++|+||-+-+..... ....+..++....+..-++.+|||.. ..+.+.++.+-
T Consensus 302 ~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 302 VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 3467666665543111 1257899999998765322 12233344433333444566888765 45566666553
No 219
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.34 E-value=0.046 Score=57.37 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=51.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCc------EEEEeCCCCHHHHHHHHHHHh----cCCcEEE--EEcCccccCCCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKGVE------AVAVHGGKDQEEREYAISSFK----AGKKDVL--VATDVASKGLDFP 461 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~------~~~ihg~~~~~~r~~~~~~F~----~g~~~VL--VaT~~~~~GlDip 461 (588)
+..++.|..+.-..+.+.......|+- -..+-+.-+..+-..++...+ .|+-.|| ||-.-.++|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 446788888877777776665554431 122334334444455555554 4665666 5567778999998
Q ss_pred Ccc--eEEecCCCC
Q 007829 462 DIQ--HVINYDMPA 473 (588)
Q Consensus 462 ~v~--~VI~~~~p~ 473 (588)
+-. .||.++.|.
T Consensus 610 hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 610 HHYGREVIMEGIPY 623 (755)
T ss_pred cccCceEEEEeccc
Confidence 865 899999994
No 220
>PRK08727 hypothetical protein; Validated
Probab=96.29 E-value=0.03 Score=54.68 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=25.9
Q ss_pred CCcceeeecCCcccccCC-CHHHHHHHHHhhhhc-ceEEEEeeccchHH
Q 007829 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQ-RQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~~-~q~l~~SAT~~~~i 344 (588)
.++++||+||+|.+.... ....+..+++..... .++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 455789999999987543 222333444444332 34555455455443
No 221
>PRK12377 putative replication protein; Provisional
Probab=96.21 E-value=0.025 Score=55.55 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=26.1
Q ss_pred CCCcceeeecCCcccccCCCH-HHHHHHHHhh-hhcceEEEEeeccchHH
Q 007829 297 LDNCRYLTLDEADRLVDLGFE-DDIREVFDHF-KAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~-~~i~~i~~~~-~~~~q~l~~SAT~~~~i 344 (588)
+..+++||+||.+......+. ..+..++..- .....+++.|--.+..+
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAM 210 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHH
Confidence 467889999999654332222 2333344332 23355666665444433
No 222
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.049 Score=61.10 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=68.7
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007829 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip 461 (588)
...++...-..+..+||.++.+.....+.+.|+.. |.++..+|+++++.+|.....+.++|+.+|+|.|..+- =.-++
T Consensus 234 Yl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~ 312 (730)
T COG1198 234 YLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFK 312 (730)
T ss_pred HHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchh
Confidence 33444444456789999999999999998888654 89999999999999999999999999999999997532 24566
Q ss_pred CcceEE
Q 007829 462 DIQHVI 467 (588)
Q Consensus 462 ~v~~VI 467 (588)
++..||
T Consensus 313 ~LGLII 318 (730)
T COG1198 313 NLGLII 318 (730)
T ss_pred hccEEE
Confidence 777766
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.18 E-value=0.013 Score=51.35 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
++.+++.+|+|+|||.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 5678999999999996643
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=96.14 E-value=0.02 Score=55.66 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCCcceeeecCCcccccC-CCHHHHHHHHHhhhhc-ceEEEEeeccchH
Q 007829 297 LDNCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQ-RQTLLFSATMPTK 343 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~-~q~l~~SAT~~~~ 343 (588)
+.++++||+||+|.+... .+...+..+++..... .+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 346789999999998633 2344555666655443 4566777776554
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.098 Score=51.25 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=29.9
Q ss_pred CCCcceeeecCCcccccCCCHH-HHHHHHHh-hhhcceEEEEeeccchHHH
Q 007829 297 LDNCRYLTLDEADRLVDLGFED-DIREVFDH-FKAQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~-~i~~i~~~-~~~~~q~l~~SAT~~~~i~ 345 (588)
+..+++|||||++......|.. .+..|+.. ......+++.|---+..+.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 4578899999999876444433 23344443 2334567777766555544
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.074 Score=54.55 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCCcceeeecCCcccccCCC-HHHHHHHHHhhh-hcceEEEEeeccchHHH
Q 007829 297 LDNCRYLTLDEADRLVDLGF-EDDIREVFDHFK-AQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~-~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~ 345 (588)
+.++++||||+.+......| ...+..++...- ....+|+.|...|..+.
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 45778999999987653332 234444554432 24556666665555553
No 227
>PRK08116 hypothetical protein; Validated
Probab=96.07 E-value=0.067 Score=53.36 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=27.7
Q ss_pred CCCcceeeecCCcc--cccCCCHHHHHHHHHhh-hhcceEEEEeeccchHHH
Q 007829 297 LDNCRYLTLDEADR--LVDLGFEDDIREVFDHF-KAQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lIvDEah~--l~~~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i~ 345 (588)
+.+.++||||+.+. ..+|. ...+..++... .....+|+.|...|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 35668999999964 33332 23344455443 334567777766665544
No 228
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.98 E-value=0.037 Score=54.70 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=41.2
Q ss_pred cCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeecc---chHHHHHHHHhccCC
Q 007829 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM---PTKIQNFARSALVKP 355 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~---~~~i~~~~~~~l~~p 355 (588)
......++.+|+||||.|....+ ..++..+........+++.+..+ |..+..-..++..++
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred CCCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 44567789999999999986544 56677777777677777777765 344444444444443
No 229
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.0065 Score=64.61 Aligned_cols=143 Identities=19% Similarity=0.223 Sum_probs=72.3
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcc
Q 007829 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264 (588)
Q Consensus 185 ~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~ 264 (588)
.-+.||||||++..-.++ +++.. .....|+.|........+...+.. ++... | -+.-.+.+++..
T Consensus 2 f~matgsgkt~~ma~lil-~~y~k---------gyr~flffvnq~nilekt~~nftd---~~s~k-y-lf~e~i~~~d~~ 66 (812)
T COG3421 2 FEMATGSGKTLVMAGLIL-ECYKK---------GYRNFLFFVNQANILEKTKLNFTD---SVSSK-Y-LFSENININDEN 66 (812)
T ss_pred cccccCCChhhHHHHHHH-HHHHh---------chhhEEEEecchhHHHHHHhhccc---chhhh-H-hhhhhhhcCCce
Confidence 357899999987544444 44442 122457777766555544433322 11100 0 000011112211
Q ss_pred hH----HHHHHHhcCCcEEEeChHHHHHHHHcc---cCCC---CCcc-eeeecCCcccccC-------------CCHHHH
Q 007829 265 MR----SQLEVVKRGVHIVVATPGRLKDMLAKK---KMNL---DNCR-YLTLDEADRLVDL-------------GFEDDI 320 (588)
Q Consensus 265 ~~----~~~~~l~~~~~IvV~Tp~~l~~~l~~~---~~~l---~~~~-~lIvDEah~l~~~-------------~~~~~i 320 (588)
+. ........+..|+++|.+.|...+.+. .+.+ .+.. +++-||||++... .|+..+
T Consensus 67 i~ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v 146 (812)
T COG3421 67 IEIKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVV 146 (812)
T ss_pred eeeeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHH
Confidence 10 001112346789999999997766543 3333 3333 4667999998632 122222
Q ss_pred HHHHHhhhhcceEEEEeeccchH
Q 007829 321 REVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
...+.. +++.-++.||||.|..
T Consensus 147 ~la~~~-nkd~~~lef~at~~k~ 168 (812)
T COG3421 147 KLALEQ-NKDNLLLEFSATIPKE 168 (812)
T ss_pred HHHHhc-CCCceeehhhhcCCcc
Confidence 222222 2233467899999843
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.91 E-value=0.13 Score=48.79 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=33.3
Q ss_pred CCcceeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHH
Q 007829 298 DNCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~ 349 (588)
+++++|+||-+-+.... .....++.++....+..-.+.+|||........+.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 45778999988775421 12346666677776666678899998766444333
No 231
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.89 E-value=0.052 Score=53.05 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=25.6
Q ss_pred cceeeecCCcccccC-CCHHHHHHHHHhhhhc-ceEEEEeeccch
Q 007829 300 CRYLTLDEADRLVDL-GFEDDIREVFDHFKAQ-RQTLLFSATMPT 342 (588)
Q Consensus 300 ~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~-~q~l~~SAT~~~ 342 (588)
+++|||||+|.+... .+...+..+++.+... ...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999998643 3445566666655432 223444555443
No 232
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.79 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.2
Q ss_pred cCCCEEEEecCCchHhHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp 200 (588)
.|+.+.+++|||+|||......
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakL 370 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKL 370 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678888999999999665433
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.83 E-value=0.039 Score=51.62 Aligned_cols=48 Identities=21% Similarity=0.098 Sum_probs=32.5
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+++.||+|+|||...+--+...+ . .|..++|+.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~----------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A----------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H----------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999976544444333 2 4667887764 46667777766665
No 234
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.82 E-value=0.058 Score=52.10 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCCcceeeecCCcccccCC-CHHHHHHHHHhhh-hcceEEEEeeccchHH
Q 007829 297 LDNCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i 344 (588)
+..+++|+||.+|.+.+.. +...+..+++.+. ...++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4578899999999987642 3455566666654 3456777776777654
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.071 Score=52.69 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=32.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
++.++++.|++|+|||..+...+...+ . .| .-++.+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~----------~g-~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K----------AG-ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H----------cC-CeEEEEEHHHHHHHHHHHH
Confidence 778999999999999965443333332 2 23 3466677777777655433
No 236
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.73 E-value=0.038 Score=60.09 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=52.9
Q ss_pred HHHHHHHHHHh-----cC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007829 168 PIQVQGLPVVL-----SG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 168 ~~Q~~~i~~il-----~g----~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
|+|.-.+-.++ .| +.+++.-|=|.|||......++..++-. +..++.++++++++.-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-------g~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-------GEPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-------CccCceEEEEeCCHHHHHHHHHH
Confidence 67887777776 22 4688889999999966554444333221 23578899999999999999999
Q ss_pred HHHHhhc
Q 007829 239 VEQFLTP 245 (588)
Q Consensus 239 ~~~~~~~ 245 (588)
+..++..
T Consensus 74 ~~~~i~~ 80 (477)
T PF03354_consen 74 AKKMIEA 80 (477)
T ss_pred HHHHHHh
Confidence 9998764
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.71 E-value=0.083 Score=57.03 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=27.5
Q ss_pred CCcceeeecCCcccccCC-CHHHHHHHHHhhh-hcceEEEEeeccchHHH
Q 007829 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~ 345 (588)
..+++||+||+|.+.... ....+..++..+- ...++++.|...|..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 357799999999986532 2234445554443 33455555555454443
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.70 E-value=0.084 Score=47.66 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=26.3
Q ss_pred CCCcceeeecCCcccccCCC----------HHHHHHHHHhhhhcceEEEEeeccch
Q 007829 297 LDNCRYLTLDEADRLVDLGF----------EDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~----------~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
.....++|+||.+.+.+... ...+..+....+...-+++++...+.
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 35677999999998754321 23444445454433444555555443
No 239
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.56 E-value=0.082 Score=56.81 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=29.4
Q ss_pred CCCcceeeecCCcccccCC-CHHHHHHHHHhhhh-cceEEEEeeccchHH
Q 007829 297 LDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKA-QRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i 344 (588)
+.++++||+||+|.+.... ..+.+..+++.+.. ..|+|+.|-..|..+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 3567899999999886432 33455666665543 345555555555443
No 240
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.55 E-value=0.087 Score=50.93 Aligned_cols=42 Identities=10% Similarity=0.347 Sum_probs=24.8
Q ss_pred cceeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 300 CRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 300 ~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
.++|||||+|.+... .+...+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999998643 224555555555433323455565543
No 241
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.47 E-value=0.37 Score=53.29 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHh---cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVL---SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 165 ~p~~~Q~~~i~~il---~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
-|.|.=.+-|..++ ..+-.++.+|=|-|||.+..+.+...+.. .+..++|.+|...-+.++++.++.
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHH
Confidence 34555555555544 56778888999999997765555433321 357899999999999999999999
Q ss_pred Hhhcccc-cCCCCc-eEEEEEcCcch---HHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC
Q 007829 242 FLTPMRD-AGYPDL-RTLLCIGGVDM---RSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG 315 (588)
Q Consensus 242 ~~~~~~~-~~~~~i-~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~ 315 (588)
++..+.. .+++.. ++..+.||... ... ...+.| ..|.+++-. .+...-..+++||+|||.-+.+
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p-~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISD-PAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecC-cccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH--
Confidence 8875531 122222 22223332110 000 000001 223332210 1222223568999999999866
Q ss_pred CHHHHHHHHHhhh-hcceEEEEeecc
Q 007829 316 FEDDIREVFDHFK-AQRQTLLFSATM 340 (588)
Q Consensus 316 ~~~~i~~i~~~~~-~~~q~l~~SAT~ 340 (588)
+.+..++-.+. ....++++|.+.
T Consensus 309 --~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 --GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred --HHHHHHHHHHccCCCceEEEeCCC
Confidence 33344433333 244566666665
No 242
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.47 E-value=0.13 Score=62.55 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 165 QPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
.+++-|.+++..++.. +-+++.+..|+|||.+. -.+..++... ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l--~~i~~~~~~l-----~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF--RAVMSAVNML-----PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH--HHHHHHHHHH-----hhccCceEEEEechHHHHHHH
Confidence 6899999999999955 66888899999999553 2222111110 012467789999998776654
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=95.39 E-value=0.084 Score=52.36 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=19.3
Q ss_pred HhcCCCEEEEecCCchHhHHHHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp 200 (588)
+..|.++++.||+|+|||......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 447899999999999999665443
No 244
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.30 E-value=0.1 Score=55.90 Aligned_cols=50 Identities=12% Similarity=0.320 Sum_probs=31.4
Q ss_pred CCcceeeecCCcccccCC-CHHHHHHHHHhhh-hcceEEEEeeccchHHHHH
Q 007829 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKIQNF 347 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~ 347 (588)
.++++|++||+|.+.... ....+..+++.+. ...++|+.|.+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999987543 2345555555443 3456666665666665443
No 245
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.25 E-value=0.13 Score=54.72 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=25.9
Q ss_pred CcceeeecCCcccccCC-CHHHHHHHHHhhh-hcceEEEEeeccchHH
Q 007829 299 NCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKI 344 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i 344 (588)
.+++||+||+|.+.... ....+..++..+. ...++++.|...|..+
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 46799999999986542 2233444554443 3455555444444443
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.24 E-value=0.31 Score=48.52 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=69.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEE-cCCH--HHHHHHHHHHHHHhhcccccCCCCce
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIV-CPSR--ELARQTYEVVEQFLTPMRDAGYPDLR 255 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil-~Ptr--~La~Q~~~~~~~~~~~~~~~~~~~i~ 255 (588)
.+..+.+++++|+|||..+...+... .. .+..+.++ +.+. ..+.|+. .+...+ ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~----------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~------~~- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG----------KKKTVGFITTDHSRIGTVQQLQ----DYVKTI------GF- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH----------cCCeEEEEecCCCCHHHHHHHH----HHhhhc------Cc-
Confidence 55788999999999997765544332 11 23444444 3222 3444443 332211 22
Q ss_pred EEEEEcCcchHHHHHHHhcCCcEEE-eChHHHHHHHHcccCCCCCcceeeecCCcccccCC-CHHHHHHHHHhhhhcceE
Q 007829 256 TLLCIGGVDMRSQLEVVKRGVHIVV-ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQRQT 333 (588)
Q Consensus 256 ~~~~~gg~~~~~~~~~l~~~~~IvV-~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~~~q~ 333 (588)
.+.. .+|..+.+.+..- .....+++|+||-+=+..... ....+..++....+..-+
T Consensus 132 ---------------------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~ 189 (270)
T PRK06731 132 ---------------------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIC 189 (270)
T ss_pred ---------------------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEE
Confidence 2222 3455555444321 112467899999998864321 123344444444444446
Q ss_pred EEEeeccc-hHHHHHHHHhc
Q 007829 334 LLFSATMP-TKIQNFARSAL 352 (588)
Q Consensus 334 l~~SAT~~-~~i~~~~~~~l 352 (588)
+.+|||.. ..+.+.++.+-
T Consensus 190 LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 190 LTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred EEEcCccCHHHHHHHHHHhC
Confidence 77999864 46667776654
No 247
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.21 E-value=0.015 Score=53.71 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=53.1
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007829 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 i~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
++.|+=|-|||.+.-+.+...+. .....++|.+|+.+-++.+++.+..-+..+ +++.....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~----------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~------~~~~~~~~--- 61 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ----------KGKIRILVTAPSPENVQTLFEFAEKGLKAL------GYKEEKKK--- 61 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----------hcCceEEEecCCHHHHHHHHHHHHhhcccc------cccccccc---
Confidence 57899999999665544432211 122579999999999888777666554433 11110000
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
...........+..|-+..|+.+... ....++||||||=.+. .+.+..++...+ .++||.|..
T Consensus 62 ~~~~~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 62 RIGQIIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp -----------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred ccccccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 00000001112457788888665222 2245899999998763 245555544332 567788863
No 248
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.21 E-value=0.06 Score=57.08 Aligned_cols=136 Identities=15% Similarity=0.237 Sum_probs=77.5
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH-HHHHHHHHHHHHhhcccccCCCCceEEEEE
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE-LARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~-La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (588)
-.++.+..|||||.+..+-++..++.. ..+..++++-|+.. |..-++..+...+..+ ++....-.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~------g~~~~~~~ 68 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--------KKQQNILAARKVQNSIRDSVFKDIENLLSIE------GINYEFKK 68 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHc------CChhheee
Confidence 357889999999999888888777663 14567899989887 6666677777665543 22111111
Q ss_pred cCcchHHHHHHHhc-CCcEEEeCh-HHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhh--cceEEEE
Q 007829 261 GGVDMRSQLEVVKR-GVHIVVATP-GRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLF 336 (588)
Q Consensus 261 gg~~~~~~~~~l~~-~~~IvV~Tp-~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~ 336 (588)
...+. .+. +.. |..|++..- +.... + .....+.++.+|||..+.. ..+..++..++. ....+++
T Consensus 69 ~~~~~--~i~-~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~ 136 (396)
T TIGR01547 69 SKSSM--EIK-ILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIF 136 (396)
T ss_pred cCCcc--EEE-ecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEE
Confidence 11100 000 111 345555442 11111 1 1223368999999999853 345555555432 2224788
Q ss_pred eeccchH
Q 007829 337 SATMPTK 343 (588)
Q Consensus 337 SAT~~~~ 343 (588)
|.||+..
T Consensus 137 t~NP~~~ 143 (396)
T TIGR01547 137 SSNPESP 143 (396)
T ss_pred EcCcCCC
Confidence 8888654
No 249
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.16 E-value=0.27 Score=52.35 Aligned_cols=130 Identities=19% Similarity=0.220 Sum_probs=65.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEE-cCC-HHHHHHHHHHHHHHhhcccccCCCCceE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIV-CPS-RELARQTYEVVEQFLTPMRDAGYPDLRT 256 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil-~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~i~~ 256 (588)
.++.+++++|||+|||.+..--+...... ..+.++.+| +-+ |.-+. +.+..+...+ ++.+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~---------~~g~~V~li~~D~~r~~a~---eqL~~~a~~~------~vp~ 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALL---------YGKKKVALITLDTYRIGAV---EQLKTYAKIM------GIPV 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh---------cCCCeEEEEECCccHHHHH---HHHHHHHHHh------CCce
Confidence 36678999999999996654433333211 123444444 332 32222 2233333211 2221
Q ss_pred EEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccC-CCHHHHHHHHHh-hhhcceEE
Q 007829 257 LLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL-GFEDDIREVFDH-FKAQRQTL 334 (588)
Q Consensus 257 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~-~~~~~i~~i~~~-~~~~~q~l 334 (588)
.++.++..+...+.. +..+++|+||-+-+.... .....+..++.. ..+....+
T Consensus 282 ---------------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~L 336 (424)
T PRK05703 282 ---------------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYL 336 (424)
T ss_pred ---------------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEE
Confidence 122345555455442 346799999999764321 111344444442 12234478
Q ss_pred EEeeccch-HHHHHHHHh
Q 007829 335 LFSATMPT-KIQNFARSA 351 (588)
Q Consensus 335 ~~SAT~~~-~i~~~~~~~ 351 (588)
.+|||... .+......+
T Consensus 337 Vl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 337 VLSATTKYEDLKDIYKHF 354 (424)
T ss_pred EEECCCCHHHHHHHHHHh
Confidence 88998764 444444444
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.065 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=18.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIM 203 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~ 203 (588)
.|..+++++|||+|||.....-+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999775444433
No 251
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.33 Score=54.89 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=23.6
Q ss_pred eCCCCHHHHHHHHHHHhcCC-cEEEEEcCcc---ccCCCCCC
Q 007829 425 HGGKDQEEREYAISSFKAGK-KDVLVATDVA---SKGLDFPD 462 (588)
Q Consensus 425 hg~~~~~~r~~~~~~F~~g~-~~VLVaT~~~---~~GlDip~ 462 (588)
+..+.+.-+..+.+.|.... .-+|+.++-+ ..|+|.+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~L~~h~~~~l~~~~~~~~~ 500 (767)
T PRK14723 459 LRAMAQAVRAAVRRDVAAACDRYVLALHGTLALKVAGLPGAQ 500 (767)
T ss_pred HHHHhHhHHHHHHHHHHhcccceEEEeecccccCCCCCCcch
Confidence 44566666666777777543 3477777763 36666654
No 252
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.10 E-value=0.091 Score=59.37 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH
Q 007829 157 KLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY 236 (588)
Q Consensus 157 ~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~ 236 (588)
.+....-..+++-|.+++-. ...++++.|..|||||.+.+--+...+.... ..+..+|+++.|+..|..+.
T Consensus 188 ~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-------~~~~~IL~ltft~~AA~em~ 258 (684)
T PRK11054 188 FFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-------AQPEQILLLAFGRQAAEEMD 258 (684)
T ss_pred HHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-------CCHHHeEEEeccHHHHHHHH
Confidence 33333335789999999864 3457899999999999775544433332211 13457999999999999999
Q ss_pred HHHHHHhh
Q 007829 237 EVVEQFLT 244 (588)
Q Consensus 237 ~~~~~~~~ 244 (588)
+++...+.
T Consensus 259 eRL~~~lg 266 (684)
T PRK11054 259 ERIRERLG 266 (684)
T ss_pred HHHHHhcC
Confidence 98887653
No 253
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.05 E-value=0.12 Score=51.53 Aligned_cols=55 Identities=20% Similarity=0.061 Sum_probs=32.7
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+..|.-+++.|++|+|||...+-.+...+.. .+..++|+.- -+-..++...+...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----------~g~~vl~iS~-E~~~~~~~~r~~~~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ----------HGVRVGTISL-EEPVVRTARRLLGQ 81 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----------cCceEEEEEc-ccCHHHHHHHHHHH
Confidence 3467788999999999996544433333221 2566777763 23344444444433
No 254
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.03 E-value=0.15 Score=49.48 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=26.6
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcce-EEEEeeccch
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ-TLLFSATMPT 342 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q-~l~~SAT~~~ 342 (588)
..++||+||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 46789999999875432 2344555555444443 4777777654
No 255
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.03 E-value=0.1 Score=57.41 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCcceeeecCCcccccCC-CHHHHHHHHHhhhh-cceEEEEeeccchHHH
Q 007829 297 LDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKA-QRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~ 345 (588)
+.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3557899999999986543 33455666666544 4567766665555543
No 256
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.02 E-value=0.12 Score=58.74 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEec
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLL-KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~ 469 (588)
.+.++||.++++..+..+.+.|.. .|..+..+||+++..+|...+....+|..+|+|+|..+.. +.+.++.+||.-
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEE
Confidence 467899999999999999999976 4788999999999999999999999999999999974332 567778887743
No 257
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.99 E-value=0.028 Score=55.36 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhh
Q 007829 136 EDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHE 208 (588)
Q Consensus 136 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~ 208 (588)
.-+|..+.+|+++++|+-+.+.+... .-=+++.+|||||||.. +..++.++..+
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 34888999999999999888744322 11267779999999955 56677776553
No 258
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.12 Score=53.96 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=35.3
Q ss_pred CcceeeecCCcccccC-CCHHHHHHHHHhhhhc-ceEEEEeeccchHHH
Q 007829 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQ-RQTLLFSATMPTKIQ 345 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~-~q~l~~SAT~~~~i~ 345 (588)
+++++++|.++.+... .....+..+++.+... .|+|+.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999998875 3556667777776543 478888878887655
No 259
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.091 Score=53.97 Aligned_cols=20 Identities=35% Similarity=0.302 Sum_probs=16.6
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp 200 (588)
.++|+++|.|+|||.++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 48999999999999776443
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.89 E-value=0.42 Score=47.74 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCcceeeecCCcccccC-CCHHHHHHHHHhhh------hcceEEEEeeccchHHHHHHHHh
Q 007829 298 DNCRYLTLDEADRLVDL-GFEDDIREVFDHFK------AQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~------~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++|++|=+-++... .....+..+.+..+ +..-++.++||........+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45678888888775421 12234445544444 44457788888765544444443
No 261
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.86 E-value=0.27 Score=55.17 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=89.8
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCC--CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007829 155 LKKLKAKGIVQPTPIQVQGLPVVLSGR--DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il~g~--dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
-..+.....+.+..-|.+.+..++..+ -+++.|.=|=|||.+.-+.+...... .....++|.+|+.+-+
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~---------~~~~~iiVTAP~~~nv 274 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL---------AGSVRIIVTAPTPANV 274 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh---------cCCceEEEeCCCHHHH
Confidence 344555555566666666777777543 57777999999998877766333222 1145799999999998
Q ss_pred HHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 233 ~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
+.+++-+.+-+..+ |+. -.+..-..|.... .-.+...|=+.+|.... ...++||||||=.+.
T Consensus 275 ~~Lf~fa~~~l~~l---g~~-~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp 336 (758)
T COG1444 275 QTLFEFAGKGLEFL---GYK-RKVAPDALGEIRE----VSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP 336 (758)
T ss_pred HHHHHHHHHhHHHh---CCc-cccccccccceee----ecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC
Confidence 88887766655544 111 1111111010000 00012345566664331 116799999998763
Q ss_pred cCCCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 313 DLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
.+.+..++..+ +.++||.|+.
T Consensus 337 ----lplL~~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 337 ----LPLLHKLLRRF----PRVLFSTTIH 357 (758)
T ss_pred ----hHHHHHHHhhc----CceEEEeeec
Confidence 35555555544 3688888873
No 262
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.85 E-value=0.12 Score=56.36 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=64.6
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~ 468 (588)
..+.++||.++++.-+..+++.|+.. |..+..+||+++..+|.+......+|+.+|+|+|..+-. ..++++.+||.
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 45678999999999999999999764 778999999999999999999999999999999975432 45677888773
No 263
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.85 E-value=0.071 Score=60.46 Aligned_cols=71 Identities=24% Similarity=0.137 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.+++-|.+++.. ....+++.|..|||||.+...-+...+.+.. -....+|+|+.|+..|..+.+++.+++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999875 3568899999999999886555544442211 1234699999999999999999987754
No 264
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.84 E-value=0.18 Score=52.24 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=69.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC-HHHHHHHHHHHHHHhhcccccCCCCceEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS-RELARQTYEVVEQFLTPMRDAGYPDLRTL 257 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~i~~~ 257 (588)
.++-+.++||||.|||....=.+....+.. +....+||-.-| |-=|.. .++.|+.-+ ++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~--------~~~kVaiITtDtYRIGA~E---QLk~Ya~im------~vp~- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK--------KKKKVAIITTDTYRIGAVE---QLKTYADIM------GVPL- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc--------cCcceEEEEeccchhhHHH---HHHHHHHHh------CCce-
Confidence 488999999999999966433333332121 233344555544 332322 234443333 3333
Q ss_pred EEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEE
Q 007829 258 LCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLF 336 (588)
Q Consensus 258 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~ 336 (588)
.+|-+|.-|...+. .+.++++|.||=+-+=.. .-....+...+..-....-.+.+
T Consensus 264 --------------------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvl 319 (407)
T COG1419 264 --------------------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVL 319 (407)
T ss_pred --------------------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEE
Confidence 34445555544443 256678888887766321 11223444444444333446788
Q ss_pred eeccch-HHHHHHHHhc
Q 007829 337 SATMPT-KIQNFARSAL 352 (588)
Q Consensus 337 SAT~~~-~i~~~~~~~l 352 (588)
|||.-. .+.+....+-
T Consensus 320 sat~K~~dlkei~~~f~ 336 (407)
T COG1419 320 SATTKYEDLKEIIKQFS 336 (407)
T ss_pred ecCcchHHHHHHHHHhc
Confidence 888754 3444555543
No 265
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.82 E-value=0.27 Score=60.63 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
..+++.|.+|+..++.+ +-+++.+..|+|||.+ +-.+..++... ....+..++.++||---|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~--l~~v~~~~~~l-----~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ--FRAVMSAVNTL-----PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH--HHHHHHHHHHh-----hcccCceEEEECCcHHHHHHH
Confidence 36899999999999975 5678889999999954 33332222210 012466789999998776654
No 266
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.81 E-value=0.15 Score=50.86 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=33.2
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhc-ccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEE-MMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~-~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
.+++++|+|+.|||.+. ....... .........-|.+++-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 58999999999999643 2222211 11111112246778888887766666655443
No 267
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.76 E-value=0.34 Score=52.05 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=29.2
Q ss_pred CcceeeecCCcccccCC-CHHHHHHHHHhhhh-cceEEEEeeccchHHHHH
Q 007829 299 NCRYLTLDEADRLVDLG-FEDDIREVFDHFKA-QRQTLLFSATMPTKIQNF 347 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~~~ 347 (588)
.+++|++||+|.+.+.. ....+..++..+.. ..++|+.|...|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 57799999999886542 22345555555433 345555555556555444
No 268
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.67 E-value=0.22 Score=50.69 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCCcceeeecCCcccc--cCCCHHHHHHHHHh-hhhcceEEEEeeccchHHHH
Q 007829 297 LDNCRYLTLDEADRLV--DLGFEDDIREVFDH-FKAQRQTLLFSATMPTKIQN 346 (588)
Q Consensus 297 l~~~~~lIvDEah~l~--~~~~~~~i~~i~~~-~~~~~q~l~~SAT~~~~i~~ 346 (588)
+..+++||+||...-. +|.....+..|+.. +.....+++.|--.+..+.+
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 4678899999997643 23211223444443 23455677766665555443
No 269
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.67 E-value=0.26 Score=44.73 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=40.7
Q ss_pred CCCCcceeeecCCcccccCCC--HHHHHHHHHhhhhcceEEEEeeccchHHHHHHH
Q 007829 296 NLDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~~~~~--~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~ 349 (588)
....+++||+||+-..++.|+ .+.+..+++.-+...-+|+.+-.+|+.+.+.+.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 356789999999999887774 356677777766666778888888888766553
No 270
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.63 E-value=0.11 Score=52.95 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 156 KKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 156 ~~l~~~g~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
+.+...|. +++.|...|..+. .+.+++++++||||||.. +-.++..+... ..+-+++.+=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~--------~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS--------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC--------CCCceEEEecCCccc
Confidence 34445554 5677877776655 667999999999999944 34444443221 123467777777776
No 271
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.60 E-value=0.16 Score=61.66 Aligned_cols=124 Identities=23% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
++|+-|.++|.. .++++++.|..|||||.+.+--++..+... ..-..+|+|+=|+..|..+.+++.+-+.
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG--------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 368899999973 688999999999999988666666555431 1223589999999999999998887654
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc--ceeeecCCcc
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC--RYLTLDEADR 310 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~--~~lIvDEah~ 310 (588)
..... .| .......+.. .-...-|+|-..+..-+.+.....-.+ .+=|.||...
T Consensus 71 ~~~~~-~p--------~~~~L~~q~~---~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 KALQQ-EP--------NSKHLRRQLA---LLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHhc-Cc--------hhHHHHHHHh---hccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 32111 00 0001122222 223567899988865555433222222 3445777765
No 272
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.56 E-value=0.094 Score=59.61 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=65.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-cccCCCCCCcceEE
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-ASKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~~~GlDip~v~~VI 467 (588)
.+.+++|.+||+.-+..+++.+.. .|+.+..+||+++..+|..++..+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 466899999999998888777654 4789999999999999999999999999999999975 45567888898887
No 273
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.56 E-value=0.2 Score=55.13 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=86.2
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceE
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRT 256 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~ 256 (588)
....+-.++..|=-.|||.... +++..++.. -.|-.+++.+|.+..++.+++++..++... ++.-.+
T Consensus 251 ~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s--------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~----f~~~~v 317 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWFLV-PLIALALAT--------FRGIKIGYTAHIRKATEPVFEEIGARLRQW----FGASRV 317 (738)
T ss_pred HhhccceEEEecccCCchhhHH-HHHHHHHHh--------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhh----cchhhe
Confidence 3355778888999999997655 565555432 258899999999999999999999987632 222222
Q ss_pred EEEEcCcchHHHHHHHhcC--CcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh-hhcceE
Q 007829 257 LLCIGGVDMRSQLEVVKRG--VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-KAQRQT 333 (588)
Q Consensus 257 ~~~~gg~~~~~~~~~l~~~--~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~-~~~~q~ 333 (588)
-.+.| ... .-.+..| ..|.++|- -..+...=..++++|||||+-+.+.. +..++-.+ ..+.++
T Consensus 318 ~~vkG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~a----l~~ilp~l~~~n~k~ 383 (738)
T PHA03368 318 DHVKG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDA----VQTIMGFLNQTNCKI 383 (738)
T ss_pred eeecC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHH----HHHHHHHHhccCccE
Confidence 22222 111 0011223 25666641 11233334578899999999987743 33333222 236789
Q ss_pred EEEeeccch
Q 007829 334 LLFSATMPT 342 (588)
Q Consensus 334 l~~SAT~~~ 342 (588)
|++|.|...
T Consensus 384 I~ISS~Ns~ 392 (738)
T PHA03368 384 IFVSSTNTG 392 (738)
T ss_pred EEEecCCCC
Confidence 999988654
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.49 E-value=0.58 Score=49.26 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCcceeeecCCccccc-CCCHHHHHHHHHhhh---hcceEEEEeeccch-HHHHHHHHh
Q 007829 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFK---AQRQTLLFSATMPT-KIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~---~~~q~l~~SAT~~~-~i~~~~~~~ 351 (588)
..+++|+||=+-++.. ..-...+..++..+. +..-++.+|||... .+...+..+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4568899998766532 212233444444432 12346788999876 444555444
No 275
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.46 E-value=0.15 Score=54.04 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
..++++.||+|+|||.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999663
No 276
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.45 E-value=0.21 Score=56.79 Aligned_cols=70 Identities=21% Similarity=0.132 Sum_probs=52.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 166 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 166 p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
+++-|.+++.. ...++++.|..|||||.+.+--+...+.+.. .....+|+|+.|+..|.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-------YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68889998864 4568999999999999775555444432211 1234689999999999999999988754
No 277
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.45 E-value=0.098 Score=53.45 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=43.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHH-hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 155 LKKLKAKGIVQPTPIQVQGLPVV-LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~i-l~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
++.|...|+ +++.|...+..+ ..+++++++|+|||||| .++-.++..+... ....++++|-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~--------~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ--------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc--------CCCceEEEEcCCCcc
Confidence 455555564 567787777654 47789999999999999 4344444433210 134467777788776
No 278
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.43 E-value=0.24 Score=55.62 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=68.7
Q ss_pred HHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007829 384 VYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK-G-VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 384 ~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~-g-~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip 461 (588)
..++......++++||.++.+..+..+.+.|... | ..+..+|++++..+|.+......+|+.+|+|.|..+.- .-++
T Consensus 178 l~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~ 256 (665)
T PRK14873 178 AAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVE 256 (665)
T ss_pred HHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccC
Confidence 3344444456778999999999999999999765 4 67999999999999999999999999999999976433 5666
Q ss_pred CcceEEe
Q 007829 462 DIQHVIN 468 (588)
Q Consensus 462 ~v~~VI~ 468 (588)
+...||.
T Consensus 257 ~LgLIIv 263 (665)
T PRK14873 257 DLGLVAI 263 (665)
T ss_pred CCCEEEE
Confidence 7777773
No 279
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.24 E-value=0.13 Score=54.48 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHH
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~ 198 (588)
-+-......+..+..++++++.+|+|+|||.++.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 4555666677777789999999999999996653
No 280
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.22 E-value=0.62 Score=42.86 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=39.7
Q ss_pred CCCcceeeecCCcccccCCC--HHHHHHHHHhhhhcceEEEEeeccchHHHHHHH
Q 007829 297 LDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~--~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~ 349 (588)
-..+++||+||+-..++.|+ .+.+..+++..+....+|+..-.+|+.+.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 46789999999999888774 356667777766666777777778887766553
No 281
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.16 E-value=0.11 Score=59.47 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++-|.+++.. ...+++|.|..|||||.+...-+. +++... .-....+|+|+-|+..|..+.+++.+++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~------~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIA-WLLSVE------NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHcC------CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4689999999865 356899999999999987544443 333321 0123478999999999999999998876
Q ss_pred h
Q 007829 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 74 ~ 74 (715)
T TIGR01075 74 G 74 (715)
T ss_pred c
Confidence 4
No 282
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.09 E-value=0.28 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=17.0
Q ss_pred CCCEEEEecCCchHhHHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~ 201 (588)
|+-+.++||||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 5567888999999997755444
No 283
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.02 E-value=0.36 Score=49.75 Aligned_cols=41 Identities=12% Similarity=0.349 Sum_probs=24.6
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeecc
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
...++||+||+|.+... ....+..++...+....+|+ +++-
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~~ 164 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATRQ 164 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeCC
Confidence 45679999999988543 22445555555555554444 4443
No 284
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.15 Score=52.42 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHHHhcC-C---CEEEEecCCchHhHHHHH
Q 007829 165 QPTPIQVQGLPVVLSG-R---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g-~---dvi~~a~TGsGKTl~~~l 199 (588)
.++|||...|..+... + -.++.||.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 3589999999998843 2 478999999999966543
No 285
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.00 E-value=0.082 Score=58.38 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH-HHHH
Q 007829 164 VQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY-EVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~-~~~~ 240 (588)
...+|+|.+.+..+-.. +.++++.++-+|||.+.+..+ ...+.. ....+|++.||..+|..+. ..+.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~-g~~i~~---------~P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWI-GYSIDQ---------DPGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhc-eEEEEe---------CCCCEEEEEEcHHHHHHHHHHHHH
Confidence 35689999999887744 689999999999998544433 222221 2234799999999999877 4555
Q ss_pred HHhhcccccCCCCceEEEEE---cCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCccccc
Q 007829 241 QFLTPMRDAGYPDLRTLLCI---GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~---gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~ 313 (588)
.++... |.++-.+.- ...........+. |..+.++.-. ....+.-..+++|++||.|.+..
T Consensus 85 Pmi~~s-----p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~------S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 85 PMIRAS-----PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGAN------SPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHhC-----HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCC------CCcccccCCcCEEEEechhhccc
Confidence 554432 222211111 0000111111122 3344444311 11233455688999999999853
No 286
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.13 Score=59.16 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=27.8
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
...+++||||+|+|...++ +.+.+++...+....+|+. +|-+..
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~-tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFA-TTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEE-eCChhh
Confidence 5678999999999976443 4455555555555544444 355444
No 287
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.94 E-value=0.19 Score=51.01 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=41.4
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 155 LKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
++.|.+.|. +++-|...+..+. .+++++++++||||||.. +-.++..+... ....+++++=.+.|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~--------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN--------DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc--------CCCceEEEECCchhh
Confidence 445555553 4555666665544 667999999999999954 33344333210 124567888888776
No 288
>PF13173 AAA_14: AAA domain
Probab=93.93 E-value=0.44 Score=41.55 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=24.1
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
.-.+|++||+|.+.+ |...+..+.... ...++++.+
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tg 96 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTG 96 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEc
Confidence 456899999999976 446777776654 334444433
No 289
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.92 E-value=0.2 Score=47.94 Aligned_cols=19 Identities=26% Similarity=0.245 Sum_probs=15.1
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~l 199 (588)
.++|+.||.|.|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 3799999999999966433
No 290
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.91 E-value=0.34 Score=61.18 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=44.6
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHH--HHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFV--LPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~--lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
..+++.|.+|+..++.+ +-+++.++.|+|||.... +-.+..+.+ ..+..++.++||-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---------hcCCeEEEEeChHHHHHHH
Confidence 46899999999999865 446777999999995531 122222222 2467899999997776654
No 291
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.88 E-value=0.15 Score=58.53 Aligned_cols=72 Identities=24% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..++|-|.+++.. ....+++.|..|||||.+..--+. +++... .-....+|+|+-|+..|..+.+++.+++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~------~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIA-WLMQVE------NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHcC------CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3589999999874 346899999999999977554444 333311 0123468999999999999999998876
Q ss_pred h
Q 007829 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 4
No 292
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=0.83 Score=47.43 Aligned_cols=23 Identities=35% Similarity=0.222 Sum_probs=17.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~ 201 (588)
.++-+++++|+|+|||....-.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46778899999999996654433
No 293
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.84 E-value=0.33 Score=47.02 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=67.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.-+++.+++|+|||...+--+...+.. .|-.+++++- .+-..++.+.+..+.-.+..... .-....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~----------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~-~g~l~~ 85 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN----------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYED-SGKLKI 85 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH----------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHH-TTSEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh----------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhh-cCCEEE
Confidence 45788999999999997655545444433 1456777774 44556666666665211100000 001111
Q ss_pred EEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC----CHHHHHHHHHhhhhcceEE
Q 007829 259 CIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG----FEDDIREVFDHFKAQRQTL 334 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~----~~~~i~~i~~~~~~~~q~l 334 (588)
+......... . -..++.+...+..... -...+.+|+|-...+.... +...+..++..++....+.
T Consensus 86 ~d~~~~~~~~--------~--~~~~~~l~~~i~~~i~-~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ 154 (226)
T PF06745_consen 86 IDAFPERIGW--------S--PNDLEELLSKIREAIE-ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTT 154 (226)
T ss_dssp EESSGGGST---------T--SCCHHHHHHHHHHHHH-HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEE
T ss_pred Eecccccccc--------c--ccCHHHHHHHHHHHHH-hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 1111000000 0 1233444333332111 1122789999988873222 3345555666666666677
Q ss_pred EEeecc
Q 007829 335 LFSATM 340 (588)
Q Consensus 335 ~~SAT~ 340 (588)
++++..
T Consensus 155 llt~~~ 160 (226)
T PF06745_consen 155 LLTSEM 160 (226)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 777774
No 294
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.81 E-value=0.95 Score=47.99 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=30.1
Q ss_pred CcceeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHh
Q 007829 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
.+++||+|=+-++... ..-..+..+.....+..-++.++||......+.++.+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 4667777777665321 1223444444444555557778888776555555544
No 295
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.80 E-value=0.47 Score=44.36 Aligned_cols=140 Identities=12% Similarity=0.078 Sum_probs=75.9
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH-HHHHHHHHHHhhcccccCCCCceE
Q 007829 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA-RQTYEVVEQFLTPMRDAGYPDLRT 256 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La-~Q~~~~~~~~~~~~~~~~~~~i~~ 256 (588)
+....+++..++|.|||.+++--++..+- .|.+|+|+-=.+--. .-=...+.++ +++..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g-----------~G~~V~ivQFlKg~~~~GE~~~l~~l---------~~v~~ 79 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG-----------HGKKVGVVQFIKGAWSTGERNLLEFG---------GGVEF 79 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH-----------CCCeEEEEEEecCCCccCHHHHHhcC---------CCcEE
Confidence 35678999999999999988777776653 466777764222110 0001112221 12222
Q ss_pred EEEEcCc-----chHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCC--HHHHHHHHHhhhh
Q 007829 257 LLCIGGV-----DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKA 329 (588)
Q Consensus 257 ~~~~gg~-----~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~--~~~i~~i~~~~~~ 329 (588)
.....+. +..+... .....+... +..+.-..+++||+||+-..++.|+ .+.+..++..-+.
T Consensus 80 ~~~g~~~~~~~~~~~e~~~-----------~~~~~~~~a-~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~ 147 (191)
T PRK05986 80 HVMGTGFTWETQDRERDIA-----------AAREGWEEA-KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG 147 (191)
T ss_pred EECCCCCcccCCCcHHHHH-----------HHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC
Confidence 2111110 0000000 011111111 1223346789999999999998885 3566666666565
Q ss_pred cceEEEEeeccchHHHHHHH
Q 007829 330 QRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 330 ~~q~l~~SAT~~~~i~~~~~ 349 (588)
..-+|+.--.+|+.+.+.+.
T Consensus 148 ~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 148 MQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCEEEEECCCCCHHHHHhCc
Confidence 65666666667777766554
No 296
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.80 E-value=0.69 Score=45.20 Aligned_cols=38 Identities=26% Similarity=0.146 Sum_probs=25.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
.|.-+++.|++|+|||...+--+++.+.. .+..+++++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----------~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----------QGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCceEEEe
Confidence 56678889999999996544444443322 256778887
No 297
>PLN03025 replication factor C subunit; Provisional
Probab=93.75 E-value=0.48 Score=48.59 Aligned_cols=43 Identities=14% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
...+++|+||+|.|.... ...+..++...+.... ++++++.+.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~~~ 140 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNTSS 140 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCCcc
Confidence 357899999999987543 2444555554444444 444444433
No 298
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.69 E-value=0.63 Score=40.30 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=13.8
Q ss_pred CcceeeecCCcccccCC
Q 007829 299 NCRYLTLDEADRLVDLG 315 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~ 315 (588)
...+|++||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 34789999999998654
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.64 E-value=0.68 Score=45.01 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=33.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.+++|+|||...+-.+.. ... ++.++++++. -+-..+..+.+.++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~----------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQ----------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh----------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 5778899999999999664333332 222 3567888884 44445656656554
No 300
>PHA00729 NTP-binding motif containing protein
Probab=93.60 E-value=0.64 Score=44.73 Aligned_cols=74 Identities=8% Similarity=0.142 Sum_probs=40.3
Q ss_pred cEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC-CH----HHHHHHHHhhhhcceEEEEeeccchHHHHHHHH
Q 007829 277 HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FE----DDIREVFDHFKAQRQTLLFSATMPTKIQNFARS 350 (588)
Q Consensus 277 ~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~-~~----~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~ 350 (588)
..++.+.+.|.+.+....-....++++|+||+-.-.... |. .....+...+....+++.+...-|..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 455555566655554321122456789999943222110 11 122334445555567788888777777766665
No 301
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.60 E-value=0.43 Score=48.68 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHHH
Q 007829 164 VQPTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~---dvi~~a~TGsGKTl~~~l 199 (588)
..++|||..++..+. +|+ -+++.||.|+||+..+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 468899999998876 343 488999999999965433
No 302
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.56 E-value=1 Score=48.12 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=32.6
Q ss_pred cceeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHh
Q 007829 300 CRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 300 ~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
.++||||.+-++... ..-..+..+.....+..-++.++||......+.++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 378999999665421 1223445555555566667888888876655555553
No 303
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.55 E-value=0.18 Score=56.88 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=65.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-ccCCCCCCcceEE
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-SKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~-~~GlDip~v~~VI 467 (588)
.+.+++|.+||+.-+..+++.+.. .|+.+..+||+++..+|...++...+|+.+|+|+|..+ ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 466899999999999988877754 37999999999999999999999999999999999755 4567888888877
No 304
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.79 Score=42.69 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=52.5
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
=.++.+|+.||||.-.+--+-+. . -.|.++++..|- +.... +...+.-.-
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~-~----------~~g~~v~vfkp~----------iD~R~---------~~~~V~Sr~ 55 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRY-K----------EAGMKVLVFKPA----------IDTRY---------GVGKVSSRI 55 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHH-H----------HcCCeEEEEecc----------ccccc---------ccceeeecc
Confidence 35788999999997533322222 1 147788888886 22221 111111112
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 262 g~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
|... ..++|-++..+.+.+........ ++.|.||||+-+.
T Consensus 56 G~~~----------~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~ 95 (201)
T COG1435 56 GLSS----------EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFD 95 (201)
T ss_pred CCcc----------cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCC
Confidence 2221 24666677777777775443322 8899999999854
No 305
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.45 E-value=0.52 Score=50.23 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=23.0
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
.-.+|+|||+|++.. .....++..+.. ..++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCCC
Confidence 456899999999753 233344444433 44666666643
No 306
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.45 E-value=0.19 Score=50.56 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.++.+++++|||+|||....-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356788999999999966543
No 307
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.39 E-value=0.68 Score=45.95 Aligned_cols=21 Identities=33% Similarity=0.194 Sum_probs=16.7
Q ss_pred CCCEEEEecCCchHhHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp 200 (588)
..++++.||+|+|||.++-+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 358899999999999765443
No 308
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.39 E-value=1.2 Score=50.91 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=17.5
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHH
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFD 325 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~ 325 (588)
....+|||||+|.+...+ ...+..+++
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR 894 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFD 894 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHH
Confidence 345689999999998642 233444444
No 309
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.39 E-value=0.9 Score=43.99 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=32.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|..+++.+++|+|||...+.-+...+ . .+..++++.- .+...++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~----------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R----------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h----------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 467889999999999966544333332 2 3456777764 34455655555554
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.37 E-value=0.45 Score=46.53 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=37.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.|..+++.|++|+|||...+--+...+ . .|.+++|++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~----------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H----------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 457889999999999976554444443 2 366788887 5567777777777764
No 311
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.33 E-value=0.4 Score=49.02 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=24.5
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
..++|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999843223345556666655556555533
No 312
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.20 E-value=1.2 Score=47.09 Aligned_cols=21 Identities=33% Similarity=0.210 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.|.-+.++||||+|||.....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 566788999999999976543
No 313
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.18 E-value=1.3 Score=44.04 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHh----cCC-CEEEEecCCchHhHHHH
Q 007829 165 QPTPIQVQGLPVVL----SGR-DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~-dvi~~a~TGsGKTl~~~ 198 (588)
-+++.+.+++..+. .+. .++++||+|+|||.+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566666666543 233 57889999999996643
No 314
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.17 E-value=1 Score=48.08 Aligned_cols=50 Identities=24% Similarity=0.110 Sum_probs=29.0
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.|.=+++.|++|+|||...+--+.+.+.. .+..++|++ .-.-..|+..++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~----------~g~~v~~fS-lEm~~~~l~~Rl 242 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR----------EGKPVLFFS-LEMSAEQLGERL 242 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCcEEEEE-CCCCHHHHHHHH
Confidence 45667788999999996554444343322 345566665 333344444433
No 315
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.098 Score=52.01 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=18.3
Q ss_pred hcCCCEEEEecCCchHhHHHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~~l 199 (588)
++..|+++++|||||||+.+.-
T Consensus 95 L~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHH
Confidence 4567999999999999977654
No 316
>PTZ00293 thymidine kinase; Provisional
Probab=93.14 E-value=0.68 Score=44.03 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=25.0
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
|+=-++.+|++||||.-.+- .+..... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~----------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTY----------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHH----------cCCceEEEEec
Confidence 44457889999999954333 3333222 46678888886
No 317
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.09 E-value=0.48 Score=51.53 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=16.6
Q ss_pred CCEEEEecCCchHhHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~ 201 (588)
+.+++.||.|+|||.++.+-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999997765443
No 318
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.06 E-value=0.19 Score=53.86 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.4
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp 200 (588)
.+++.||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999776544
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=93.04 E-value=1.4 Score=46.87 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=15.2
Q ss_pred CEEEEecCCchHhHHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~ 201 (588)
-+++++++|+|||.+..--+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 46788999999997654433
No 320
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.04 E-value=0.25 Score=51.50 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHH
Q 007829 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAM 206 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~ 206 (588)
|..+.++.++++++.+++.+. ..+..+++++|||||||.. +-.++.++.
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 444446777777776544332 1344689999999999954 445555543
No 321
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.96 E-value=0.49 Score=55.29 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-cccCCCCCCcceEE
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-ASKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~~~GlDip~v~~VI 467 (588)
.+.+++|.+||+.-|...++.+... ++.+..++|..+..++..+++.+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3578999999999999998887653 678889999999999999999999999999999974 45678888999877
No 322
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.95 E-value=0.3 Score=46.46 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=27.5
Q ss_pred HHcccCCC--CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEE
Q 007829 290 LAKKKMNL--DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLL 335 (588)
Q Consensus 290 l~~~~~~l--~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~ 335 (588)
+.++++.+ .+.+.||+||||.|.+- -...++..+....+..++.+
T Consensus 102 FAQ~kv~lp~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 102 FAQKKVTLPPGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred HHHhhccCCCCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhh
Confidence 33444444 56788999999999753 33455555555555444443
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.91 E-value=1.8 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=15.7
Q ss_pred CEEEEecCCchHhHHHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLPMI 202 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l 202 (588)
-+++++++|+|||.+..--+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 477889999999977544433
No 324
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.83 E-value=0.38 Score=50.65 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=86.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 152 EPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
..+++.++++ +..+...|..+.-..-.|.- .+.+-.|||||.+..+-+.. ++. .++.-+.+|-+=|+.|
T Consensus 150 ~a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~--lh~-------knPd~~I~~Tfftk~L 218 (660)
T COG3972 150 NALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE--LHS-------KNPDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH--Hhc-------CCCCceEEEEeehHHH
Confidence 3455666554 55667778887666556665 66788999999765444332 221 2456689999999999
Q ss_pred HHHHHHHHHHHhhcccc--cCCCCceEEEEEcCcchHHHHHHHhcCC---cEEEeC----hHHHHHHHHcccCCCCCcce
Q 007829 232 ARQTYEVVEQFLTPMRD--AGYPDLRTLLCIGGVDMRSQLEVVKRGV---HIVVAT----PGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~--~~~~~i~~~~~~gg~~~~~~~~~l~~~~---~IvV~T----p~~l~~~l~~~~~~l~~~~~ 302 (588)
+.++...+.+|+-.... -.+..+-++.-.||............-| .+-+.- -..+..-+....-+..-+++
T Consensus 219 ~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ 298 (660)
T COG3972 219 ASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDY 298 (660)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccE
Confidence 99999999998743321 1122334444445654433222221111 111110 01111112222233667899
Q ss_pred eeecCCccccc
Q 007829 303 LTLDEADRLVD 313 (588)
Q Consensus 303 lIvDEah~l~~ 313 (588)
|.+||++-+.+
T Consensus 299 ilIDE~QDFP~ 309 (660)
T COG3972 299 ILIDESQDFPQ 309 (660)
T ss_pred EEecccccCCH
Confidence 99999998543
No 325
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=0.2 Score=57.27 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...+++||||||+|....+ +.+.+++..-+....+|+ ..|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFIL-aTTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLL-ATTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEE-ECCCchhc
Confidence 4678999999999964332 333444444334443444 34544443
No 326
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.80 E-value=0.19 Score=46.78 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=26.4
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
+-.++++++.|++|+|||..+...+ ..+.. .|..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~-~~~~~----------~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIA-NEAIR----------KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHH-HHHHH----------TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHH-HHhcc----------CCcceeEe-ecCceecc
Confidence 3468899999999999997654433 33333 35556654 44555444
No 327
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.80 E-value=0.35 Score=52.26 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
....+++||||+|.|....+ +.+.+.+...++.. ++.|.+|-+..+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v-~fIlatte~~Kl 159 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHV-KFILATTEVKKI 159 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCe-EEEEEeCChHHH
Confidence 35788999999999876433 33333344333333 344444544443
No 328
>PRK04195 replication factor C large subunit; Provisional
Probab=92.79 E-value=0.64 Score=50.67 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
.+.+++.||+|+|||.+.
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999654
No 329
>CHL00181 cbbX CbbX; Provisional
Probab=92.78 E-value=1.2 Score=44.87 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=17.1
Q ss_pred CCCEEEEecCCchHhHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp 200 (588)
|.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 567999999999999776544
No 330
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.76 E-value=1.1 Score=44.33 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=62.9
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|.=+++.|.||.|||...+-.+.+.+.. .+..++|++.= .-..++..++-..... +...-+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~----------~~~~vly~SlE-m~~~~l~~R~la~~s~--------v~~~~i 79 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN----------GGYPVLYFSLE-MSEEELAARLLARLSG--------VPYNKI 79 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT----------TSSEEEEEESS-S-HHHHHHHHHHHHHT--------STHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh----------cCCeEEEEcCC-CCHHHHHHHHHHHhhc--------chhhhh
Confidence 3456777999999996655555544433 24677887753 1122333333322211 111111
Q ss_pred EcCcchHHHHH-------HHhcCCcEEE-e----ChHHHHHHHHcccCCCCCcceeeecCCcccccC----CCHHHHHHH
Q 007829 260 IGGVDMRSQLE-------VVKRGVHIVV-A----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL----GFEDDIREV 323 (588)
Q Consensus 260 ~gg~~~~~~~~-------~l~~~~~IvV-~----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~----~~~~~i~~i 323 (588)
..+.-..+.+. .+.. ..+.| . |++.+.+.+..-......+++||||=.|.|... +....+..+
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i 158 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEI 158 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHH
T ss_pred hccccCHHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHH
Confidence 11211122222 2222 23433 3 444555555432222377899999999998864 233455555
Q ss_pred HHhh
Q 007829 324 FDHF 327 (588)
Q Consensus 324 ~~~~ 327 (588)
...+
T Consensus 159 ~~~L 162 (259)
T PF03796_consen 159 SREL 162 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 331
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.58 E-value=2 Score=39.46 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=14.4
Q ss_pred EEEEecCCchHhHHHHHHH
Q 007829 183 MIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp~ 201 (588)
+++.+++|+|||......+
T Consensus 3 ~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5778999999997754433
No 332
>PRK06904 replicative DNA helicase; Validated
Probab=92.53 E-value=2.5 Score=45.78 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=57.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+|+.|.+|.|||...+-.+.+.+.. .+..++|++ .-.-..|+..++-.....+ ...-
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~----------~g~~Vl~fS-lEMs~~ql~~Rlla~~s~v--------~~~~ 280 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA----------SEKPVLVFS-LEMPAEQIMMRMLASLSRV--------DQTK 280 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh----------cCCeEEEEe-ccCCHHHHHHHHHHhhCCC--------CHHH
Confidence 34455667899999996543333333322 244566654 3355556655554442211 1111
Q ss_pred E-Ec-CcchHHH------HHHHhcCCcEEE-----eChHHHHHHHHcccCCCCCcceeeecCCcccccC
Q 007829 259 C-IG-GVDMRSQ------LEVVKRGVHIVV-----ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 259 ~-~g-g~~~~~~------~~~l~~~~~IvV-----~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~ 314 (588)
+ .| ..+..+. ...+.....+.| .|+..+...+.+-......+++||||=.+.|...
T Consensus 281 i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 281 IRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred hccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 1 22 1222211 122323344666 3555555444321111235789999999888643
No 333
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.51 E-value=0.34 Score=53.60 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=26.0
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
....+++||||+|.|...++ +.+.+.+...+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChH
Confidence 35678999999999976543 33444444444444344433 5443
No 334
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.51 E-value=1.7 Score=45.00 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=47.6
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH-HHHHHHHHhhcccccCCCCceEEEEEcC
Q 007829 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ-TYEVVEQFLTPMRDAGYPDLRTLLCIGG 262 (588)
Q Consensus 184 i~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q-~~~~~~~~~~~~~~~~~~~i~~~~~~gg 262 (588)
++.++.|+|||.+..+.++..++.. ..+..++++ ||..-+.. +............. ...+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~--------~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR--------PPGRRVIIA-STYRQARDIFGRFWKGIIELLPS--WFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS--------SS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T--TTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC--------CCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH--hcCcccccCCCC
Confidence 5678999999988877777766552 112455555 55554444 33322222111111 001111100111
Q ss_pred cchHHHHHHHhcCCcEEEeChHHH--HHHHHcccCCCCCcceeeecCCcccccCC
Q 007829 263 VDMRSQLEVVKRGVHIVVATPGRL--KDMLAKKKMNLDNCRYLTLDEADRLVDLG 315 (588)
Q Consensus 263 ~~~~~~~~~l~~~~~IvV~Tp~~l--~~~l~~~~~~l~~~~~lIvDEah~l~~~~ 315 (588)
.-. +.+|..|.+.+-..- ..-+. =..++++++||+-.+.+..
T Consensus 70 ~~~------~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~ 113 (384)
T PF03237_consen 70 KII------LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDA 113 (384)
T ss_dssp EEE------ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHH
T ss_pred cEE------ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHH
Confidence 000 034566666663211 11111 1567799999998876543
No 335
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.39 E-value=0.27 Score=56.13 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=55.1
Q ss_pred HhhcCCCCEEEEeCccccHHHHHHHHHHcC-----CcEEE-EeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc
Q 007829 389 CLQKTPPPVLIFCENKADVDDIHEYLLLKG-----VEAVA-VHGGKDQEEREYAISSFKAGKKDVLVATDVA 454 (588)
Q Consensus 389 ~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-----~~~~~-ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 454 (588)
++...+.++++.+||..-+.++++.|.... +.+.. |||.++..++..++++|.+|..+|||+|..+
T Consensus 120 ~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 120 YLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 345567899999999999988888886542 33333 9999999999999999999999999999865
No 336
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.25 E-value=0.2 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=18.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~ 205 (588)
.+.-+++++|||||||.. +-.++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 566789999999999955 33344443
No 337
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.22 E-value=0.49 Score=53.19 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
...+++||||+|.|....| +.+.+++...+... +++|++|-+..
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v-~FILaTtd~~K 161 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHV-KFILATTDPQK 161 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCe-EEEEEECChhh
Confidence 4578999999999976443 33344444433333 44555554443
No 338
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.20 E-value=0.36 Score=55.51 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..++|-|.+++.. ...++++.|..|||||.+..--+...+.+.. -....+|+++-|+..|..+.+.+.+++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 4689999999875 3568999999999999876555544332211 112368999999999999999888775
Q ss_pred h
Q 007829 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 4
No 339
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.19 E-value=0.22 Score=51.33 Aligned_cols=44 Identities=25% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 176 VVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 176 ~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
++..+.+++++++||||||.. +-.++..+ ....+++.+=.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i-----------~~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI-----------PPQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc-----------CCCCCEEEECCCccc
Confidence 344788999999999999944 33333322 123456777787776
No 340
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.17 E-value=0.25 Score=54.62 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=57.6
Q ss_pred HHHHhcCCcEEEEEcCccccCCCCCCcceE--------EecCCCCChhHHHHHhcccCCCCCc-cEEEEEEcCC--CChh
Q 007829 437 ISSFKAGKKDVLVATDVASKGLDFPDIQHV--------INYDMPAEIENYVHRIGRTGRCGKT-GIATTFINKN--QSET 505 (588)
Q Consensus 437 ~~~F~~g~~~VLVaT~~~~~GlDip~v~~V--------I~~~~p~s~~~y~QriGRagR~g~~-g~~~~~~~~~--~~~~ 505 (588)
-++|.+|+..|-|-+.+++-||-+..-+-| |...+|||.+.-+|..|||.|.++- +--++|+-.+ .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 467999999999999999999999765444 5678999999999999999999763 5556665433 2334
Q ss_pred HHHHHHHHH
Q 007829 506 TLLDLKHLL 514 (588)
Q Consensus 506 ~~~~l~~~l 514 (588)
+..-+.+-|
T Consensus 930 FAS~VAKRL 938 (1300)
T KOG1513|consen 930 FASIVAKRL 938 (1300)
T ss_pred HHHHHHHHH
Confidence 444333333
No 341
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.05 E-value=0.092 Score=63.16 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=76.4
Q ss_pred CEEEEeCccccHHHHHHHHHHcC-CcEEEEeCCCC-----------HHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc
Q 007829 396 PVLIFCENKADVDDIHEYLLLKG-VEAVAVHGGKD-----------QEEREYAISSFKAGKKDVLVATDVASKGLDFPDI 463 (588)
Q Consensus 396 ~viIF~~s~~~~~~l~~~L~~~g-~~~~~ihg~~~-----------~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v 463 (588)
..|+||+....+..+.+.++... ..+..+.|.+. +-.+.+++..|....+.+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999998888888886652 23333444332 1245788999999999999999999999999999
Q ss_pred ceEEecCCCCChhHHHHHhcccCCCC
Q 007829 464 QHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 464 ~~VI~~~~p~s~~~y~QriGRagR~g 489 (588)
+.|+.++.|.....|+|..||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999996653
No 342
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.28 Score=50.43 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=32.9
Q ss_pred ChHHHHHHHHcccCCCCCcceeeecCCcccccC----CCHHHHHHHHHhh-----hhcceEEEEeeccchH
Q 007829 282 TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL----GFEDDIREVFDHF-----KAQRQTLLFSATMPTK 343 (588)
Q Consensus 282 Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~----~~~~~i~~i~~~~-----~~~~q~l~~SAT~~~~ 343 (588)
-...|.|+..+....| +|.|||||.++.. ...+..+..++.+ ...+.+++.=||.-+.
T Consensus 430 kiH~lFDWakkS~rGL----llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 430 KIHKLFDWAKKSRRGL----LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHHHHHHHHhhcccce----EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 3344556655432222 6899999987742 1224444444443 2345688888887554
No 343
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.98 E-value=0.27 Score=49.74 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=43.3
Q ss_pred CCCCCcHHHHHHHHHHhcCC-CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGR-DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~-dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.|...++-|...+-.+..++ |+++++.||||||.. +-++.... ...-+++.+=-|.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i----------~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI----------DSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC----------CCcccEEEEeehhhhcc
Confidence 46788999999998888776 999999999999944 22222111 12238888888888743
No 344
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.96 E-value=1.2 Score=47.97 Aligned_cols=58 Identities=26% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHhc-----CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 173 GLPVVLS-----GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 173 ~i~~il~-----g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.++.++. |.-+++.+++|+|||...+-.+.... . .+.+++|+.- .+-..|+...+.++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~----------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-A----------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-h----------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 4556664 45678889999999965444333322 1 3567888874 45566776666655
No 345
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.90 E-value=0.51 Score=48.56 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=28.0
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
+..+.+++++++||||||.. +-.++..+ ....+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i-----------p~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI-----------PAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC-----------CCCCeEEEecCCCcc
Confidence 34788999999999999943 34444332 123466666556555
No 346
>PRK13764 ATPase; Provisional
Probab=91.85 E-value=0.34 Score=53.55 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=19.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~ 205 (588)
.++++++++|||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999954 34444444
No 347
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.79 E-value=0.6 Score=50.91 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=19.5
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhh
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 329 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~ 329 (588)
....++|||||+|.+.. ..+..+++.+..
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEe 142 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEE 142 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHh
Confidence 35678999999998753 344555555543
No 348
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.63 E-value=1.2 Score=50.59 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=25.3
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...+|||||+|++... ....++..+. ..++++.+||-++..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChH
Confidence 4568999999997532 2233333333 356778888765443
No 349
>PRK08506 replicative DNA helicase; Provisional
Probab=91.63 E-value=1.8 Score=46.95 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=56.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|.||.|||...+--+.+ +.. .+..++|++ .-.-..|+..++-.....+ ....++
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~-~~~----------~g~~V~~fS-lEMs~~ql~~Rlla~~s~v---~~~~i~--- 252 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALK-ALN----------QDKGVAFFS-LEMPAEQLMLRMLSAKTSI---PLQNLR--- 252 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHH-HHh----------cCCcEEEEe-CcCCHHHHHHHHHHHhcCC---CHHHHh---
Confidence 3455677799999999654444433 322 344566664 3345556555554432211 000111
Q ss_pred EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCccccc
Q 007829 259 CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~ 313 (588)
.|..+..+. ...+.. ..+.|- |+..+...+.+-......+++||||=.+.|..
T Consensus 253 -~~~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 253 -TGDLDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred -cCCCCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 122222111 122222 345543 45555544433211123578999999998863
No 350
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=1.3 Score=46.33 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.5
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~l 199 (588)
.|+++.|+||+|||.+.-.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~ 61 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF 61 (366)
T ss_pred ccEEEECCCCCCHhHHHHH
Confidence 4799999999999976433
No 351
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.51 E-value=2 Score=49.32 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=28.2
Q ss_pred ceeeecCCcccccCCC----HHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 301 RYLTLDEADRLVDLGF----EDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~----~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
.+|+|||+|.+...|- ..++..++..+-...++.+..||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999976542 2344455554444455667777766554
No 352
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.47 E-value=0.71 Score=50.84 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=71.3
Q ss_pred HHHHHHHHhh--cCCCCEEEEeCcccc----HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-
Q 007829 382 KIVYLLECLQ--KTPPPVLIFCENKAD----VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA- 454 (588)
Q Consensus 382 k~~~ll~~l~--~~~~~viIF~~s~~~----~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~- 454 (588)
.+..++..+. ..+.++...+||--- .+.+.++|...|+.+..+.|.+....|..++....+|.++++|.|-++
T Consensus 297 TvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 297 TVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 3455555554 356789999999654 445555666679999999999999999999999999999999999876
Q ss_pred ccCCCCCCcceEEec
Q 007829 455 SKGLDFPDIQHVINY 469 (588)
Q Consensus 455 ~~GlDip~v~~VI~~ 469 (588)
...+++.++-.||.=
T Consensus 377 Qd~V~F~~LgLVIiD 391 (677)
T COG1200 377 QDKVEFHNLGLVIID 391 (677)
T ss_pred hcceeecceeEEEEe
Confidence 588999999988853
No 353
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.46 E-value=0.4 Score=53.18 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
...+++||||+|+|....+ +.+.+++...+... .++|++|-+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v-~FILaTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHV-KFLFATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCc-EEEEEECChH
Confidence 4568999999999875443 34444555444444 3444455433
No 354
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.42 E-value=0.5 Score=56.57 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=63.8
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-cccCCCCCCcceEE
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-ASKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~~~GlDip~v~~VI 467 (588)
.+.+++|.+||+.-+..+++.+... ++.+..++|+.+..++..++..+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999998888653 467888999999999999999999999999999964 45567778888877
No 355
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.41 E-value=2.1 Score=41.59 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=33.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.+++|+|||.....-+...+ . .+.+++|+.-- +-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-~----------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-K----------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-h----------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 356778889999999966544443332 1 35667777654 3345666666665
No 356
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.36 E-value=0.27 Score=53.72 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMH 207 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~ 207 (588)
.+|+.||.+.+..+. .|+=-|+-.|||+|||+..+-.++..+..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 478999999988766 78878888999999999877777665543
No 357
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=0.69 Score=49.98 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=15.2
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp 200 (588)
.+|+.||.|+|||.++.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999765443
No 358
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.19 E-value=0.68 Score=49.04 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.5
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp 200 (588)
.+|+.||.|+|||.++.+-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999776554
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.18 E-value=5.4 Score=40.82 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCcceeeecCCcccccCC-CHHHHHHHHHhh------hhcceEEEEeeccchHHHHHHHHh
Q 007829 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHF------KAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~------~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++||+|=+-++.... .-..+..+.+.+ .+..-++.++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 567889999888865321 223444444322 123346888999765443334443
No 360
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.17 E-value=0.24 Score=53.84 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=39.2
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+++++||||||||..+++|.+... .+ -+||.=|--+|...+....++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~------------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY------------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc------------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 5799999999999999999977421 22 5788889999988877766665
No 361
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.11 E-value=0.95 Score=49.48 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=24.5
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
.+.+++||||+|.|....+ +.+.+.+...+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999876443 34444555544454444433
No 362
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.04 E-value=1.8 Score=48.44 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.1
Q ss_pred EEEEecCCchHhHHHHHHH
Q 007829 183 MIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp~ 201 (588)
.|+.||.|+|||.++.+-+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999997765443
No 363
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.04 E-value=0.17 Score=53.32 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=37.4
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+++++|+||||||..+++|.+.. -...+||+=|.-++...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~-------------~~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT-------------WPGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc-------------CCCCEEEEccchhHHHHHHHHHHHc
Confidence 57899999999999999887642 1245788899999988776655544
No 364
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.97 E-value=4.3 Score=37.39 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=34.6
Q ss_pred cCCCCCcceeeecCCcccccCCCH--HHHHHHHHhhhhcceEEEEeeccchHHHHHHH
Q 007829 294 KMNLDNCRYLTLDEADRLVDLGFE--DDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah~l~~~~~~--~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~ 349 (588)
.+.-..+++||+||+-..++.|+. +.+..++..-+...-+|+.--.+|+.+.+.+.
T Consensus 91 ~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 91 AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 344567999999999998888853 45666666656666677777777777766553
No 365
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.87 E-value=0.97 Score=46.90 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
....+++||||||.|..... +.+.+.+...+....++++| +-|.
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit-~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILIS-HSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEE-CChh
Confidence 35678999999999865332 34445555434444444544 4443
No 366
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.85 E-value=1.8 Score=45.22 Aligned_cols=138 Identities=17% Similarity=0.095 Sum_probs=60.7
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
-.++.||.|+||+..+.. +...++..........+..+..+-+|+.-..|.+ +. ..+.|++..+.-..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~----i~-------~~~HPDl~~i~~~~ 110 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR----IA-------AGAHGGLLTLERSW 110 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCCccccccccccCCCCChHHHH----HH-------ccCCCCeEEEeccc
Confidence 488999999999966433 3344443210000000011234555655433333 22 22355665543211
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeec
Q 007829 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 262 g~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT 339 (588)
... ... ....|.|-..-.+.+.+... ......+++||||+|.|.... .+.+.+.+...+....+|++|..
T Consensus 111 ~~~-~~~-----~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 111 NEK-GKR-----LRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ccc-ccc-----ccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 000 000 01223333322232332222 224567899999999985422 23344444443334434444433
No 367
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=2 Score=42.56 Aligned_cols=153 Identities=19% Similarity=0.283 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-----CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGR-----DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~-----dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
|-..|++.-=-+...++|++.=+. |+- +|.++.|+ .+++.+|.|+||+ |+.-++..
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVIL---PIK---FPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVAT----------- 188 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVIL---PIK---FPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVAT----------- 188 (439)
T ss_pred CCCchhhhccchhHHHHHHhheee---ccc---chhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHh-----------
Confidence 334566653334455666655221 111 46677764 5899999999999 54444432
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC
Q 007829 216 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 216 ~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~ 295 (588)
+..-..+-+.+..|+..|.-+-+++.+.+ ..+...
T Consensus 189 --EAnSTFFSvSSSDLvSKWmGESEkLVknL----------------------------------------FemARe--- 223 (439)
T KOG0739|consen 189 --EANSTFFSVSSSDLVSKWMGESEKLVKNL----------------------------------------FEMARE--- 223 (439)
T ss_pred --hcCCceEEeehHHHHHHHhccHHHHHHHH----------------------------------------HHHHHh---
Confidence 22246788888888777766666654321 122221
Q ss_pred CCCCcceeeecCCcccccCC---CHHHHHHHHHhhh--------hcceEEEEeeccchHHHH-HHHHhccCCeEEE
Q 007829 296 NLDNCRYLTLDEADRLVDLG---FEDDIREVFDHFK--------AQRQTLLFSATMPTKIQN-FARSALVKPVTVN 359 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~~~~---~~~~i~~i~~~~~--------~~~q~l~~SAT~~~~i~~-~~~~~l~~p~~i~ 359 (588)
+.-+.|.|||+|.|.... -.+..+.|-..+- ..--++.+.||..+.+.+ -++.-+.+.+.|-
T Consensus 224 --~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 224 --NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred --cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceecc
Confidence 234578999999876532 1233444433321 223478899998766543 3344444444443
No 368
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.81 E-value=1.7 Score=39.62 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=25.6
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeec
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT 339 (588)
...+++|+|+||.|.... .+.+.+++..-+....+++.|..
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECC
Confidence 568899999999987543 25555566655555544444443
No 369
>PRK08840 replicative DNA helicase; Provisional
Probab=90.61 E-value=4.5 Score=43.72 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=54.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|.+|.|||...+-.+...+.. .+..++|+.. -.-..|+..++-.....+. ...++
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~----------~~~~v~~fSl-EMs~~ql~~Rlla~~s~v~---~~~i~--- 278 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMD----------QDKPVLIFSL-EMPAEQLMMRMLASLSRVD---QTKIR--- 278 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHh----------CCCeEEEEec-cCCHHHHHHHHHHhhCCCC---HHHHh---
Confidence 44556677999999996554333333322 2445665543 2344555544443322110 00111
Q ss_pred EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 259 CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
.|..+..+. ...+.....+.|- |+..+...+.+-......+++||||=.|.|.
T Consensus 279 -~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 279 -TGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred -cCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 222222221 1222223345553 3444443333211112357899999999885
No 370
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.59 E-value=1.4 Score=47.79 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=56.0
Q ss_pred CCCCCHHHH-HHHHHCCCCCCcH----HHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007829 147 DMRFPEPIL-KKLKAKGIVQPTP----IQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 147 ~~~l~~~l~-~~l~~~g~~~p~~----~Q~~~i~~il--~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
+.+...+++ ..|.+.--.+++. +|.+-=..|. .++-+|+.+..|||||.+++--+.-.++.. +.++ .+
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~--R~~l---~~ 260 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGY--RGPL---QA 260 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcc--cccc---cc
Confidence 445555544 5565553344433 3444434444 455678889999999988766554444432 2222 23
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 220 PFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+||+.|.+-+..-+.+.+-.++
T Consensus 261 k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 261 KPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred CceEEEcCcHHHHHHHHHhchhhc
Confidence 349999999999887766666653
No 371
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.57 E-value=0.66 Score=48.11 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=25.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+..+++++|||||||... -.++..+.. ..+.+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~---------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK---------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc---------CCCCEEEEEcCChhh
Confidence 4567899999999999553 334433321 123456666555444
No 372
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.52 E-value=1 Score=46.09 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=26.2
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
....++||+||||.|... -...+...+..-+.... +++++.-+..
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~-~il~~n~~~~ 151 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTR-FILITNDPSK 151 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeE-EEEEcCChhh
Confidence 367889999999998752 12344444444444444 4444444433
No 373
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.52 E-value=2.1 Score=42.43 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=25.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
.|.-+++.+++|+|||...+--+...+ . .|.+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~----------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S----------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h----------CCCcEEEEE
Confidence 456788899999999976544333332 1 356778877
No 374
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.51 E-value=0.43 Score=49.91 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeecc
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
...+++||||+|.|....+ +.+.+.+...+....+++ ++|-
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl-~t~~ 158 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFIL-ATTD 158 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEE-EcCC
Confidence 4568999999999875332 223333333333444444 4443
No 375
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.48 E-value=3.1 Score=44.68 Aligned_cols=114 Identities=13% Similarity=0.013 Sum_probs=55.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|++|+|||...+--+.+.+.. .|..+++++ .-.-..|+..++......+ ....
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~----------~g~~vl~~S-lEm~~~~i~~R~~~~~~~v--------~~~~ 254 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK----------EGKPVAFFS-LEMSAEQLAMRMLSSESRV--------DSQK 254 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh----------CCCeEEEEe-CcCCHHHHHHHHHHHhcCC--------CHHH
Confidence 45567778999999995544333333322 244566664 3344455555454433211 1111
Q ss_pred -EEcCcchHHH------HHHHhcCCcEEE-----eChHHHHHHHHcccCCCCCcceeeecCCccccc
Q 007829 259 -CIGGVDMRSQ------LEVVKRGVHIVV-----ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 259 -~~gg~~~~~~------~~~l~~~~~IvV-----~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~ 313 (588)
..|.....+. ...+.. ..+.| .|+..+...+..-... ..+++||||=.+.|..
T Consensus 255 ~~~g~l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 255 LRTGKLSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSG 319 (434)
T ss_pred hccCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 1122222111 122222 34444 2445555444321111 3478999999988753
No 376
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.46 E-value=0.51 Score=44.20 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHH
Q 007829 165 QPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 165 ~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~ 197 (588)
..++-|...+.... .|..+++++|||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 45677777776655 6889999999999999553
No 377
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.45 E-value=1.4 Score=49.05 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
....+++||||+|+|....+ +.+.+.+..-+....+|+ ..|-+..
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FIL-aTtep~k 166 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFIL-ATTDPQK 166 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEE-EeCChHh
Confidence 34678999999999976443 333334443334444444 4443333
No 378
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.40 E-value=1.8 Score=48.27 Aligned_cols=74 Identities=19% Similarity=0.370 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+|+..|.++++.+... ++.+..++|+.+..++...+ . ...+|+||| +.+. .
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-r 319 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-R 319 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-c
Confidence 4668999999999999998888765 67899999998776554433 3 357999999 6654 4
Q ss_pred cCCCCCcceeeecC
Q 007829 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lIvDE 307 (588)
.+++..+++||.-+
T Consensus 320 GIDip~V~~VInyd 333 (572)
T PRK04537 320 GLHIDGVKYVYNYD 333 (572)
T ss_pred CCCccCCCEEEEcC
Confidence 66788888887543
No 379
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.33 E-value=3.5 Score=44.46 Aligned_cols=98 Identities=19% Similarity=0.302 Sum_probs=73.4
Q ss_pred CCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH
Q 007829 189 TGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ 268 (588)
Q Consensus 189 TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 268 (588)
.+.||+..-++++.+.+-. +-.|.+||.+-+.+-|.|.+..+.. ++++++.+++|..+..+.
T Consensus 366 vF~gse~~K~lA~rq~v~~---------g~~PP~lIfVQs~eRak~L~~~L~~---------~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVAS---------GFKPPVLIFVQSKERAKQLFEELEI---------YDNINVDVIHGERSQKQR 427 (593)
T ss_pred eeeecchhHHHHHHHHHhc---------cCCCCeEEEEecHHHHHHHHHHhhh---------ccCcceeeEecccchhHH
Confidence 4668887777766655543 3578899999999999999988872 458999999998665443
Q ss_pred ---HHHHhc-CCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcc
Q 007829 269 ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310 (588)
Q Consensus 269 ---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~ 310 (588)
...++. ...++||| +++.++ +.+..+.+||-+..-.
T Consensus 428 de~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 334443 47899999 787765 7889999999866543
No 380
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=3.6 Score=44.89 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|++.+--..+...|... -++.|-.++.-++. .-..+++++|.|.|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHH
Confidence 445899998777777777654 33444444433332 2457999999999999764
No 381
>PRK07004 replicative DNA helicase; Provisional
Probab=90.29 E-value=2.3 Score=45.92 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=55.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|.+|+|||...+--+...+.. .+..++|++ .-.-..|+..++-.....+ ....++
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~----------~~~~v~~fS-lEM~~~ql~~R~la~~~~v---~~~~i~--- 274 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE----------YGLPVAVFS-MEMPGTQLAMRMLGSVGRL---DQHRMR--- 274 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH----------cCCeEEEEe-CCCCHHHHHHHHHHhhcCC---CHHHHh---
Confidence 45566778999999996544333333332 244555553 3333444444443221111 000111
Q ss_pred EEcCcchHHH------HHHHhcCCcEEE-----eChHHHHHHHHcccCCCCCcceeeecCCccccc
Q 007829 259 CIGGVDMRSQ------LEVVKRGVHIVV-----ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV-----~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~ 313 (588)
.|..+..+. ...+. ...+.| .|+..+.....+-......+++||||=.+.|..
T Consensus 275 -~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 275 -TGRLTDEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred -cCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 122222211 12222 345665 345455443332111223578999999998864
No 382
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.18 E-value=3.7 Score=42.98 Aligned_cols=58 Identities=22% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHhc-----CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 173 GLPVVLS-----GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 173 ~i~~il~-----g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.++.++. |.=+++.+++|+|||...+-.+.... . .+.+++|+.-. +-..|+...+.++
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a-~----------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA-K----------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH-h----------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 4555553 46678889999999966443333221 1 34578888654 4456666555554
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.17 E-value=0.96 Score=50.99 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=37.5
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
...-|+|+|..|++.+......++.++++.|...+.++.|-+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 33458999999999998777889999999999998888887765
No 384
>PRK08760 replicative DNA helicase; Provisional
Probab=90.05 E-value=2.6 Score=45.71 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=55.1
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|.=+++.|.+|+|||...+--+...+.. .+..++|++ .-.-..|+..++......+. ...+ .
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~----------~g~~V~~fS-lEMs~~ql~~Rl~a~~s~i~---~~~i----~ 290 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK----------SKKGVAVFS-MEMSASQLAMRLISSNGRIN---AQRL----R 290 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh----------cCCceEEEe-ccCCHHHHHHHHHHhhCCCc---HHHH----h
Confidence 3455667999999996554444333322 244555554 33444556555554432110 0011 1
Q ss_pred EcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 260 IGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 260 ~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
.|..+..+. ...+. ...+.|. |++.+...+.+-.. -..+++||||=.+.|.
T Consensus 291 ~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 291 TGALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred cCCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 222222111 12222 2345544 44555444432111 2357899999998885
No 385
>PRK04328 hypothetical protein; Provisional
Probab=89.97 E-value=2.5 Score=41.61 Aligned_cols=53 Identities=17% Similarity=0.035 Sum_probs=35.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.|.-+++.+++|+|||...+--+...+ . .|..++|+. +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~----------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h----------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 456788899999999966544444433 1 355677776 5556666777677663
No 386
>PRK08006 replicative DNA helicase; Provisional
Probab=89.94 E-value=5.9 Score=42.89 Aligned_cols=116 Identities=15% Similarity=0.089 Sum_probs=55.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|.+|.|||..++--+.+.+.. .+..++|+.. -.-..|+..++-.....+ ....++
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~----------~g~~V~~fSl-EM~~~ql~~Rlla~~~~v---~~~~i~--- 285 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML----------QDKPVLIFSL-EMPGEQIMMRMLASLSRV---DQTRIR--- 285 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh----------cCCeEEEEec-cCCHHHHHHHHHHHhcCC---CHHHhh---
Confidence 34455667999999995544444443322 2445666543 244445554444332211 011111
Q ss_pred EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 259 CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
.|..+..+. ...+.....+.|- |+..+...+.+-......+++||||=.|.|.
T Consensus 286 -~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 286 -TGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred -cCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 222222221 1122123445553 4555544443211112358899999999885
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=89.92 E-value=0.71 Score=44.95 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHCCCCC----------CcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCC
Q 007829 149 RFPEPILKKLKAKGIVQ----------PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGE 218 (588)
Q Consensus 149 ~l~~~l~~~l~~~g~~~----------p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 218 (588)
+++..+-+.-.+.||.. +||.. +...-+..|.-+++.|++|+|||...+--+...+ . .
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~----------~ 91 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-K----------S 91 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-h----------c
Confidence 44444444444556643 45522 2223334567788899999999976554444433 2 3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
|..++|++- -+-..|+.+.+..+
T Consensus 92 Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 92 GRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCeEEEEEE-eCCHHHHHHHHHHc
Confidence 556777753 34456777777666
No 388
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.87 E-value=3.8 Score=44.85 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=86.0
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEE
Q 007829 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTL 257 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~ 257 (588)
+..+-.+..-|=--|||. |+.|++..++... .|-++.|++.-+.-++-+++++...+... +|.-.+.
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s~--------~gI~IGYvAHqKhvs~~Vf~EI~~~lrrw----F~~~~vi 266 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKNI--------IGISIGYVAHQKHVSQFVLKEVEFRCRRM----FPRKHTI 266 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHhh--------cCceEEEEeeHHHHHHHHHHHHHHHHhhh----cCcccee
Confidence 455667788899999994 5788888877742 68889999999988888777776554432 3333332
Q ss_pred EEEcCcchHHHHHHHhcCCcEEEeChHHH-----HHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhh-hcc
Q 007829 258 LCIGGVDMRSQLEVVKRGVHIVVATPGRL-----KDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-AQR 331 (588)
Q Consensus 258 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-----~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~-~~~ 331 (588)
..-++ .|.+.-|+.= ......+...-..+.+++|||||-+.. +.+..|+-.+. .++
T Consensus 267 ~~k~~--------------tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~ 328 (668)
T PHA03372 267 ENKDN--------------VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTT 328 (668)
T ss_pred eecCc--------------EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCc
Confidence 22221 3333333211 112233455566788999999998754 45566666553 456
Q ss_pred eEEEEeeccc
Q 007829 332 QTLLFSATMP 341 (588)
Q Consensus 332 q~l~~SAT~~ 341 (588)
.+|+.|.|-+
T Consensus 329 KiIfISS~Ns 338 (668)
T PHA03372 329 KIIFISSTNT 338 (668)
T ss_pred eEEEEeCCCC
Confidence 7888888853
No 389
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.76 E-value=2.6 Score=42.88 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=23.5
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
..++|++||+|.+.... ...+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999986432 234555555555555555543
No 390
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.76 E-value=0.33 Score=53.92 Aligned_cols=49 Identities=24% Similarity=0.171 Sum_probs=40.7
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
++++++||||||||..+++|.+... +.-+||+=|--|+...+....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5899999999999999999988642 234788999999998888777665
No 391
>PRK05748 replicative DNA helicase; Provisional
Probab=89.67 E-value=4.4 Score=43.73 Aligned_cols=114 Identities=11% Similarity=-0.017 Sum_probs=55.0
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEE-
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTL- 257 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~- 257 (588)
.|.-+++.|+||+|||...+--+...+.. .+..++|+ ..-.-..|+..++-..... +...
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~----------~g~~v~~f-SlEms~~~l~~R~l~~~~~--------v~~~~ 262 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK----------TDKNVAIF-SLEMGAESLVMRMLCAEGN--------IDAQR 262 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh----------CCCeEEEE-eCCCCHHHHHHHHHHHhcC--------CCHHH
Confidence 34567778999999995544333332222 24455555 4444455555555332211 1111
Q ss_pred EEEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 258 LCIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 258 ~~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
+..|.....+. ...+. +..+.|. |+..+...+.+-......+++||||=.+.|.
T Consensus 263 i~~~~l~~~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 263 LRTGQLTDDDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred hhcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 11122222111 11222 2345553 4455544443211111257899999999885
No 392
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.66 E-value=0.2 Score=46.44 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHhcCCcEEEeChHHHHHHHHcccCC--CCCcceeeecCCcccccC
Q 007829 271 VVKRGVHIVVATPGRLKDMLAKKKMN--LDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 271 ~l~~~~~IvV~Tp~~l~~~l~~~~~~--l~~~~~lIvDEah~l~~~ 314 (588)
.....++|||+++..|.+-.....+. ...-.+|||||||.+.+.
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 33446899999999887665543332 223468999999998763
No 393
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.63 E-value=1.3 Score=49.21 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhh--cceEEEEeeccchHHH
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQ 345 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~ 345 (588)
...++|||||+|.|.. .....+++.+.. ..-++++.+|-+..+.
T Consensus 118 g~~kVIIIDEad~Lt~----~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR----EAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCH----HHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 4568999999999864 334444444432 2334555566554443
No 394
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.62 E-value=0.87 Score=50.65 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=26.4
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
....+++||||+|.|....+ +.+.+.+...+... +++|.+|-+..+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~-~fIl~t~~~~kl 162 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHV-KFIFATTEPHKV 162 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCe-EEEEEeCChhhh
Confidence 35678999999999875432 34444444433333 334444544433
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.59 E-value=1.5 Score=40.77 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=29.1
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhc-ceEEEEee
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSA 338 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~-~q~l~~SA 338 (588)
+...+++++||...-+|......+...+..+... .++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3567899999999998876666666666665433 55555544
No 396
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.55 E-value=1.3 Score=46.31 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.8
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999654
No 397
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.53 E-value=1.1 Score=45.51 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=15.7
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~l 199 (588)
..+|+++|.|+|||..+-+
T Consensus 163 pSmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARL 181 (554)
T ss_pred CceEEecCCCCchHHHHHH
Confidence 4899999999999966533
No 398
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.46 E-value=1.7 Score=48.35 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=23.9
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+++||||+|.|....+ +.+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 45678999999999975332 33344444444444444443
No 399
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.25 E-value=2.1 Score=46.15 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHh------cC----CCEEEEecCCchHhHHHH-HHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007829 164 VQPTPIQVQGLPVVL------SG----RDMIGIAFTGSGKTLVFV-LPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il------~g----~dvi~~a~TGsGKTl~~~-lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
..+-|+|.-++-.++ .| +-.++..|-+-|||.... +.+...+... ..+....|++|+.+-+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--------~~~~~~~i~A~s~~qa 131 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--------RSGAGIYILAPSVEQA 131 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--------hcCCcEEEEeccHHHH
Confidence 356899999999888 22 356888999999995443 2222222221 3677899999999999
Q ss_pred HHHHHHHHHHhhc
Q 007829 233 RQTYEVVEQFLTP 245 (588)
Q Consensus 233 ~Q~~~~~~~~~~~ 245 (588)
.+.+..++..+..
T Consensus 132 ~~~F~~ar~mv~~ 144 (546)
T COG4626 132 ANSFNPARDMVKR 144 (546)
T ss_pred HHhhHHHHHHHHh
Confidence 9988888877653
No 400
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.23 E-value=0.41 Score=46.05 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=28.8
Q ss_pred ChHHHHHHHHcccCCCCCcceeeecCCcccc-cC----CCHHHHHHHHHhhh-hcceEEEEeeccc
Q 007829 282 TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV-DL----GFEDDIREVFDHFK-AQRQTLLFSATMP 341 (588)
Q Consensus 282 Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~-~~----~~~~~i~~i~~~~~-~~~q~l~~SAT~~ 341 (588)
+...+...+.+.... -+||+||+|.+. .. .+...+..++.... .....+.++++..
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~ 166 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSD 166 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSH
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCch
Confidence 344455555543322 589999999998 21 23334444444422 2233455666653
No 401
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.22 E-value=1.1 Score=43.89 Aligned_cols=79 Identities=16% Similarity=0.326 Sum_probs=60.3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCC----cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccC-CCCCcc
Q 007829 418 GVEAVAVHGGKDQEEREYAISSFKAGK----KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG-RCGKTG 492 (588)
Q Consensus 418 g~~~~~ihg~~~~~~r~~~~~~F~~g~----~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRag-R~g~~g 492 (588)
++.+..++++.+... -.|.++. ..|+|+-+.++||+.++++.+.....-+...+.+.||.=--| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 567777776554432 2334443 789999999999999999999999999998888888754444 778888
Q ss_pred EEEEEEcCC
Q 007829 493 IATTFINKN 501 (588)
Q Consensus 493 ~~~~~~~~~ 501 (588)
.+-+|+++.
T Consensus 185 l~Ri~~~~~ 193 (239)
T PF10593_consen 185 LCRIYMPEE 193 (239)
T ss_pred ceEEecCHH
Confidence 999999765
No 402
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=89.10 E-value=0.77 Score=49.49 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCCCcceeeecCCcccccCCCHHHHHHHHHhhh
Q 007829 295 MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK 328 (588)
Q Consensus 295 ~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~ 328 (588)
+.+..-++.|+|||-.-.+.+.+..+-.+++..+
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 3466778999999999887665555555555543
No 403
>PF12846 AAA_10: AAA-like domain
Probab=89.09 E-value=0.64 Score=46.76 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
++++++|+||||||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~----------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR----------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH----------cCCCEEEEcCCchHHH
Confidence 689999999999996655 44444443 4677888877766544
No 404
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.07 E-value=1.3 Score=49.61 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
+...+++||||+|.|....+ +.+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 34678999999998765332 33444444434444444443
No 405
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.05 E-value=0.82 Score=45.48 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHH
Q 007829 167 TPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 167 ~~~Q~~~i~~il~--g~dvi~~a~TGsGKTl~~~lp~l~~ 204 (588)
.+.|.+.|..++. +..++++++||||||.. +..++..
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~ 103 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSE 103 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhh
Confidence 4456666655543 34588999999999955 3334443
No 406
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.99 E-value=1.5 Score=44.96 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHHH
Q 007829 166 PTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 166 p~~~Q~~~i~~il----~g~---dvi~~a~TGsGKTl~~~l 199 (588)
.+|||...|..+. +|+ -.++.||.|.||+..+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 4788888887765 443 567899999999966544
No 407
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.96 E-value=1.6 Score=44.98 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHhc--C---CCEEEEecCCchHhHHHHH
Q 007829 166 PTPIQVQGLPVVLS--G---RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 166 p~~~Q~~~i~~il~--g---~dvi~~a~TGsGKTl~~~l 199 (588)
++|||...|..+.. + +-.++.||.|.||+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 47888888888763 3 3678899999999966543
No 408
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.91 E-value=1 Score=47.54 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=26.6
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
....+++||||+|+|.... .+.+.+.+..-+.. -+++++||-+..+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEECChHHC
Confidence 3567899999999996532 23344444433333 3455555555443
No 409
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.91 E-value=0.82 Score=50.62 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=15.6
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp 200 (588)
+-.|+.||.|+|||.++-+-
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34788999999999776544
No 410
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.89 E-value=1.1 Score=49.45 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=15.7
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp 200 (588)
+.+++.||.|+|||.++..-
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35789999999999765443
No 411
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.77 E-value=1.9 Score=48.07 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
..++++||||+|+|....| +.+.+.+...+.... ++|.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~-fIL~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLK-FVLATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeE-EEEEECCchh
Confidence 4678999999999876443 233333333333333 3444454443
No 412
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.77 E-value=0.45 Score=51.95 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=25.0
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+++||||||.|....+ +.+...+...+....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~-NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAF-NALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHHhhcCCceEEEEEE
Confidence 35678999999999975432 34444555444455445444
No 413
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.72 E-value=7 Score=45.01 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=16.9
Q ss_pred CCCEEEEecCCchHhHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp 200 (588)
..|+++++|+|+|||.+.-..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 459999999999999765443
No 414
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.56 E-value=0.73 Score=53.81 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=77.8
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE-EEEEcCccccCCCCCCcceEEecC
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD-VLVATDVASKGLDFPDIQHVINYD 470 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~-VLVaT~~~~~GlDip~v~~VI~~~ 470 (588)
+..+++|||+.--...+.+...+...++.....-++. +-...+..|++ ++ .|+-+...+.|+|+-++.||+..+
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheec
Confidence 3457899999988888888888877777765555443 33456777776 44 467788889999999999999999
Q ss_pred CCCChhHHHHHhcccCCCCCccE
Q 007829 471 MPAEIENYVHRIGRTGRCGKTGI 493 (588)
Q Consensus 471 ~p~s~~~y~QriGRagR~g~~g~ 493 (588)
+-.++..-.|.+||..|.|++-.
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccc
Confidence 99999999999999999998753
No 415
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.47 E-value=2.7 Score=40.54 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.+++|+|||...+--+...+ . .+..++|+.-. +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~-~----------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL-K----------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h----------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 356788899999999965443333322 2 35567777654 4567777777666
No 416
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.44 E-value=3.9 Score=43.46 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=53.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc------cccCCCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV------ASKGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~------~~~GlDip~ 462 (588)
.++-.+|.|+|+.-|..++...++ .|+.++++|||.+.-++...++ -..-++|||+- --.++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 344567889999988888766544 4889999999999888766655 35678999962 236788888
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+.++|
T Consensus 371 vS~LV 375 (731)
T KOG0339|consen 371 VSYLV 375 (731)
T ss_pred eeEEE
Confidence 88766
No 417
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.41 E-value=1.2 Score=41.72 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=14.1
Q ss_pred CCCcceeeecCCccccc
Q 007829 297 LDNCRYLTLDEADRLVD 313 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~ 313 (588)
....++|||||+|.|..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 45678999999999865
No 418
>PRK14701 reverse gyrase; Provisional
Probab=88.31 E-value=1.5 Score=54.36 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=54.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~ 453 (588)
.+.++||.+||+.-+..+++.|... ++.+..+||+++..++..+++.+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988763 567789999999999999999999999999999975
No 419
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=88.27 E-value=3.4 Score=43.12 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=48.9
Q ss_pred cCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCC-CCCCCCCCC-------CCCHHHHHHHHHCCC---CC--------
Q 007829 105 LTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIP-PPIKNFKDM-------RFPEPILKKLKAKGI---VQ-------- 165 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p-~p~~~f~~~-------~l~~~l~~~l~~~g~---~~-------- 165 (588)
...|.+...--.+|...++.|..+-+-.|.|..-| ..-..|-.+ +.+++-... ...| +.
T Consensus 69 ~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~--r~~f~~l~p~~p~~R~~ 146 (416)
T PRK09376 69 DANYLPGPDDIYVSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARN--RPLFENLTPLYPNERLR 146 (416)
T ss_pred CcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcC--CCCcccCCCCChhhccc
Confidence 34566655666788888888877777666665322 222111111 122221111 0112 12
Q ss_pred -----CcHHHHHHHHHHh---cCCCEEEEecCCchHhHH
Q 007829 166 -----PTPIQVQGLPVVL---SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 166 -----p~~~Q~~~i~~il---~g~dvi~~a~TGsGKTl~ 196 (588)
+.++=..+|..+. .|+..+++||.|+|||..
T Consensus 147 le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 147 LETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 2233334444433 688999999999999954
No 420
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.27 E-value=5.4 Score=36.83 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=38.8
Q ss_pred CCCcceeeecCCcccccCCC--HHHHHHHHHhhhhcceEEEEeeccchHHHHHH
Q 007829 297 LDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~--~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~ 348 (588)
-..+++||+||+-..++.|+ .+.+..+++..+...-+|+.--.+|+.+.+.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 46789999999999988885 35666677766666667777777787776554
No 421
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.15 E-value=5.4 Score=46.23 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+..+++.+|+|+|||.++
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3457999999999999654
No 422
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.14 E-value=2.8 Score=40.78 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHhcCC-CEEEEecCCchHhHHHH
Q 007829 176 VVLSGR-DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 176 ~il~g~-dvi~~a~TGsGKTl~~~ 198 (588)
.+-.|+ -+.++++.|||||...-
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH
Confidence 344555 67788999999997765
No 423
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=88.03 E-value=2.3 Score=43.36 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHHH
Q 007829 165 QPTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~---dvi~~a~TGsGKTl~~~l 199 (588)
.++|||...+..+. +++ -.++.||.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 56788888887765 343 588999999999955433
No 424
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.98 E-value=2.7 Score=44.93 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=53.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
..++||.|+++..|..+++.+... ++++..++|+.+..++...+ . ..++|+||| +.+. .+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~-rG 318 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAA-RG 318 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhh-cC
Confidence 567999999999999888777654 77899999988766654433 2 358999999 5543 46
Q ss_pred CCCCCcceeeec
Q 007829 295 MNLDNCRYLTLD 306 (588)
Q Consensus 295 ~~l~~~~~lIvD 306 (588)
+++..+++||.-
T Consensus 319 iDip~v~~VI~~ 330 (423)
T PRK04837 319 LHIPAVTHVFNY 330 (423)
T ss_pred CCccccCEEEEe
Confidence 677888877643
No 425
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.96 E-value=2.5 Score=47.24 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.6
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp 200 (588)
.+|+.||.|.|||.++.+-
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999776544
No 426
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=87.95 E-value=2.9 Score=49.04 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=65.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-ccccCCCCCCcceEE
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-VASKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~~GlDip~v~~VI 467 (588)
.+++|.|.|||.--|+.-++-|+.+ .+++..+.--.+..+...+++..++|+++|+|.|- .++.++-+.++.+||
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4579999999988888777777654 66777888888999999999999999999999995 568999999999988
No 427
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.79 E-value=2.7 Score=46.20 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+++||||+|+|....+ +.+.+.+...+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 34668999999999876432 34444444444444444433
No 428
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.71 E-value=2.4 Score=45.72 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHc
Q 007829 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAK 292 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~l~~~l~~ 292 (588)
+.+.++||.|-|+--|.++...+... ++++..++|+.+-.+....++ ..+.|+||| |.. .
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~----------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVA-a 402 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK----------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVA-A 402 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc----------CcceeeecccccHHHHHHHHHhcccCCcceEEEc-----ccc-c
Confidence 45779999999999999988877765 578899999987766654443 258999999 554 3
Q ss_pred ccCCCCCcceeee
Q 007829 293 KKMNLDNCRYLTL 305 (588)
Q Consensus 293 ~~~~l~~~~~lIv 305 (588)
+.+++..+++||-
T Consensus 403 RGLDi~dV~lVIn 415 (519)
T KOG0331|consen 403 RGLDVPDVDLVIN 415 (519)
T ss_pred ccCCCccccEEEe
Confidence 4667777777763
No 429
>PF05729 NACHT: NACHT domain
Probab=87.70 E-value=3.7 Score=36.91 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
=+++.|+.|+|||...
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3688999999999654
No 430
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.65 E-value=5.2 Score=46.90 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.4
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~l 199 (588)
..+++++||+|+|||.+.-.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 36899999999999966543
No 431
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.61 E-value=11 Score=39.38 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhh-hhcceEEEEeeccchHH
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHF-KAQRQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i 344 (588)
....+|+|||.|.- |-+-.--+..+++.+ ....-+|..|-+.|..+
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 45568999999963 332223445555554 34456777888887664
No 432
>PTZ00110 helicase; Provisional
Probab=87.61 E-value=3.3 Score=45.91 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hhc-CCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VKR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+.+.+... ++.+..++|+....++... ++. ...|+||| +.+ ..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~-~r 439 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVA-SR 439 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chh-hc
Confidence 4678999999999999888877643 6778899998876655433 333 46899999 554 44
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
.+++..+++||.
T Consensus 440 GIDi~~v~~VI~ 451 (545)
T PTZ00110 440 GLDVKDVKYVIN 451 (545)
T ss_pred CCCcccCCEEEE
Confidence 667888888775
No 433
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.58 E-value=1.1 Score=45.72 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=35.7
Q ss_pred CCcHHHHHHH-HHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 165 QPTPIQVQGL-PVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 165 ~p~~~Q~~~i-~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+++.|..-+ -.+..+++++++++||||||.. +.+++..+ ....+.+.+=-|.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I-----------p~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI-----------PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC-----------CchhcEEEEeccccc
Confidence 4566665544 4455889999999999999943 45554433 123456666666555
No 434
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.54 E-value=0.69 Score=52.02 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
++++++||||||||..+++|-+... ...+||+=|--|+...+....++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 5899999999999999999987542 225788889888888776655554
No 435
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.51 E-value=5.3 Score=47.22 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=33.8
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
.--+||||++|.+.+......+..++...+....+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999986655556778888888888888888877543
No 436
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.48 E-value=2.2 Score=43.35 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.6
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.++++.+|.|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999554
No 437
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.47 E-value=0.86 Score=48.63 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHhcCC--CEEEEecCCchHhHHHHHHHHHHHHh
Q 007829 166 PTPIQVQGLPVVLSGR--DMIGIAFTGSGKTLVFVLPMIMIAMH 207 (588)
Q Consensus 166 p~~~Q~~~i~~il~g~--dvi~~a~TGsGKTl~~~lp~l~~~~~ 207 (588)
.++.|.+.+..+++.. =+++.+|||||||.. +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 3678888888877553 356669999999955 5666665543
No 438
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.44 E-value=3.2 Score=42.61 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHh--cCC---CEEEEecCCchHhHHHHHH
Q 007829 166 PTPIQVQGLPVVL--SGR---DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 166 p~~~Q~~~i~~il--~g~---dvi~~a~TGsGKTl~~~lp 200 (588)
.+|||...|..+. .++ -+++.||.|.|||..+..-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 3789999998877 333 5789999999999665443
No 439
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.32 E-value=1.1 Score=49.36 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=24.0
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+++||||+|.|....+ +.+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999999876433 33444444434444445444
No 440
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.19 E-value=0.62 Score=46.46 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=28.0
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
..+.+++++|+||||||.. +-.++..+-. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~----------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPP----------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHT----------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhccc----------cccceEEeccccce
Confidence 4578999999999999954 3434433211 23567777777665
No 441
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=6.5 Score=42.23 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--------cC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007829 148 MRFPEPILKKLKAKGIVQPTPIQVQGLPVVL--------SG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 148 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--------~g----~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
++.+++-++.+...|+-...+.=.+.+..-. +. ..+++.+|.|||||..+.-.++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 4677888888887777665555444443311 11 37899999999999554333221
Q ss_pred CCCCCEEEEEcCC
Q 007829 216 PGEGPFCLIVCPS 228 (588)
Q Consensus 216 ~~~~~~~Lil~Pt 228 (588)
..-|++=|+.|-
T Consensus 562 -S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 -SDFPFVKIISPE 573 (744)
T ss_pred -cCCCeEEEeChH
Confidence 256777777775
No 442
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.06 E-value=3 Score=39.31 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=51.0
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----c-ccCCCCCCc
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----A-SKGLDFPDI 463 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~-~~GlDip~v 463 (588)
++++||.++++.-+...+..+... ++.+..++|+.+..+...... +..+|+|+|.- + ..-.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 568999999999888877766544 778889999988766543332 67789999952 2 222566777
Q ss_pred ceEE
Q 007829 464 QHVI 467 (588)
Q Consensus 464 ~~VI 467 (588)
+++|
T Consensus 145 ~~lI 148 (203)
T cd00268 145 KYLV 148 (203)
T ss_pred CEEE
Confidence 7776
No 443
>PRK09354 recA recombinase A; Provisional
Probab=87.04 E-value=2 Score=44.23 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=30.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.|+-+.+.+|+|||||...+..+.... . .+..++||..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~----------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K----------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H----------cCCcEEEECCccchHH
Confidence 466778899999999977655444432 2 4667888887665554
No 444
>PRK05636 replicative DNA helicase; Provisional
Probab=87.02 E-value=5 Score=43.85 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=13.0
Q ss_pred CCcceeeecCCccccc
Q 007829 298 DNCRYLTLDEADRLVD 313 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~ 313 (588)
..+++||||=.|.|..
T Consensus 374 ~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 374 HDLKLIVVDYLQLMSS 389 (505)
T ss_pred cCCCEEEEcchHhcCC
Confidence 3578999999998863
No 445
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.01 E-value=0.99 Score=42.55 Aligned_cols=54 Identities=15% Similarity=0.326 Sum_probs=25.1
Q ss_pred CcceeeecCCcccccCCCH--HHHHHHHHhh---hhcceEEEEeeccchHHHHHHHHhc
Q 007829 299 NCRYLTLDEADRLVDLGFE--DDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSAL 352 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~--~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l 352 (588)
.=.++||||||.+...... ......+..+ +...--+.++.--+..+...++...
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 4468999999998764321 1223333333 3333345555554555555565443
No 446
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.99 E-value=0.57 Score=49.87 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 175 PVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 175 ~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
|.-...++++++|+||||||.+ +..++..+.. .+..++|+=|..++...
T Consensus 37 ~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~----------~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA----------RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh----------cCCCEEEEeCCcchhHh
Confidence 3334567999999999999965 4444444443 35578888898887543
No 447
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=86.83 E-value=0.86 Score=44.34 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=23.3
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
+++++|++|||||. +++-++..+.+ .-..+++++|.
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~----------~f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH----------KFDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc----------cCCEEEEEecC
Confidence 78999999999994 34444443322 22456666673
No 448
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=86.70 E-value=3.9 Score=44.23 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~l~~~l~~~ 293 (588)
...++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ +. ..+|+||| +.+. .
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-r 307 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKD----------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-R 307 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-c
Confidence 4567999999999999888877654 67889999998765554333 33 57899999 5554 4
Q ss_pred cCCCCCcceee
Q 007829 294 KMNLDNCRYLT 304 (588)
Q Consensus 294 ~~~l~~~~~lI 304 (588)
.+++..+++||
T Consensus 308 GiDip~v~~VI 318 (456)
T PRK10590 308 GLDIEELPHVV 318 (456)
T ss_pred CCCcccCCEEE
Confidence 66777777776
No 449
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.61 E-value=9.1 Score=43.28 Aligned_cols=78 Identities=12% Similarity=0.301 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HHh-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VVK-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+|+..+..+.+.+... ++.+..++|+.+..+... .++ ...+|+||| +.+ ..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L-~r 504 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLL-RE 504 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chh-cC
Confidence 5788999999999999988888776 678888888866544433 332 357899999 544 45
Q ss_pred cCCCCCcceeeecCCccc
Q 007829 294 KMNLDNCRYLTLDEADRL 311 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah~l 311 (588)
++.+..+++||+-+++..
T Consensus 505 GfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKE 522 (655)
T ss_pred CeeeCCCcEEEEeCcccc
Confidence 777899999998888774
No 450
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.57 E-value=3.9 Score=47.81 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.2
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~l 199 (588)
..+++++||+|+|||.+.-.
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred cCceEEECCCCCCHHHHHHH
Confidence 35899999999999966533
No 451
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.54 E-value=2.2 Score=44.73 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|+.+.+++|+|+|||...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCEEEEECCCCCChhHHH
Confidence 7889999999999999653
No 452
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.49 E-value=4.2 Score=41.92 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHHH
Q 007829 165 QPTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~---dvi~~a~TGsGKTl~~~l 199 (588)
.++|||...|..+. +|+ -.++.||.|+||+..+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 46788888888765 343 567999999999966543
No 453
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.47 E-value=1.6 Score=44.54 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=28.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.|+-+.+.+|+|||||...+-.+.. ... .+..++|+-.-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~-~~~----------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE-AQK----------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH----------cCCcEEEEcccchhHH
Confidence 5577889999999999765444433 322 3567788765544433
No 454
>PRK05595 replicative DNA helicase; Provisional
Probab=86.44 E-value=2.8 Score=45.09 Aligned_cols=51 Identities=20% Similarity=0.023 Sum_probs=28.2
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|.=+++.|.||+|||...+--+...+.. .|..++|+.. -.-..|+..++-.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~----------~g~~vl~fSl-Ems~~~l~~R~~a 251 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR----------EGKSVAIFSL-EMSKEQLAYKLLC 251 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH----------cCCcEEEEec-CCCHHHHHHHHHH
Confidence 3445667999999995544333332322 3556666644 3344455544433
No 455
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.42 E-value=1.6 Score=43.01 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~l 199 (588)
.++++.+|.|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4899999999999966544
No 456
>PRK10436 hypothetical protein; Provisional
Probab=86.19 E-value=1.5 Score=47.22 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007829 167 TPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 167 ~~~Q~~~i~~il--~g~dvi~~a~TGsGKTl~~~lp~l~~~ 205 (588)
.+.|.+.|..++ .+.-+++++|||||||... ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 445555555554 3446788899999999653 4445443
No 457
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=86.18 E-value=3.8 Score=43.93 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
...++||.|++++-|..+++.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~----------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~-~~ 307 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA----------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVA-AR 307 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-cc
Confidence 4568999999999999988887764 78899999988776664443 2 357999999 554 34
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
++++..+++||.
T Consensus 308 GiDip~v~~VI~ 319 (434)
T PRK11192 308 GIDIDDVSHVIN 319 (434)
T ss_pred CccCCCCCEEEE
Confidence 667888888773
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.16 E-value=1.1 Score=42.34 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=15.0
Q ss_pred EEEEecCCchHhHHHHHHHHHH
Q 007829 183 MIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp~l~~ 204 (588)
+++++|||||||... ..++..
T Consensus 4 ilI~GptGSGKTTll-~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 678899999999653 334443
No 459
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=85.91 E-value=1.9 Score=52.03 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=52.0
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc----CCcE---EEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLK----GVEA---VAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~----g~~~---~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~ 453 (588)
..+.++||.+||+.-+..+++.+... |+.+ ..+||+++..++...++.+.+|..+|||+|..
T Consensus 119 ~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 119 KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 34678999999999999998887653 4443 35899999999999999999999999999974
No 460
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=85.83 E-value=0.97 Score=47.67 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=32.0
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
-...++++++|.||||||. ++..++..+.. .+-++||.=|.-+....
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~----------~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRA----------RGDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH----------TT-EEEEEEETTHHHHH
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHH----------cCCEEEEEECCchHHHH
Confidence 3456899999999999996 45667766655 35677777787666443
No 461
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=85.78 E-value=1.5 Score=49.44 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=15.1
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp 200 (588)
-.|+.||.|+|||.++.+-
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 3589999999999776443
No 462
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.70 E-value=2.5 Score=49.34 Aligned_cols=19 Identities=32% Similarity=0.181 Sum_probs=15.8
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~l 199 (588)
.+++++||.|+|||.+.-.
T Consensus 209 ~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CceeEECCCCCCHHHHHHH
Confidence 5899999999999966433
No 463
>PRK06321 replicative DNA helicase; Provisional
Probab=85.66 E-value=9.2 Score=41.42 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=53.3
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE-
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC- 259 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~- 259 (588)
.=+++.|.+|+|||...+- +...+... .+..++|++ .-.-..|+..++-.... ++...-+
T Consensus 227 ~LiiiaarPgmGKTafal~-ia~~~a~~---------~g~~v~~fS-LEMs~~ql~~Rlla~~s--------~v~~~~i~ 287 (472)
T PRK06321 227 NLMILAARPAMGKTALALN-IAENFCFQ---------NRLPVGIFS-LEMTVDQLIHRIICSRS--------EVESKKIS 287 (472)
T ss_pred cEEEEEeCCCCChHHHHHH-HHHHHHHh---------cCCeEEEEe-ccCCHHHHHHHHHHhhc--------CCCHHHhh
Confidence 3456679999999955444 43332211 244455553 33344455444433221 1111111
Q ss_pred EcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCccccc
Q 007829 260 IGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 260 ~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~ 313 (588)
.|..+..+. ...+.+ ..+.|- |...+...+.+-.. -..+++||||=.+.|..
T Consensus 288 ~~~l~~~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 288 VGDLSGRDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSG 350 (472)
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCC
Confidence 222222111 122223 356554 44555444433111 24578999999998863
No 464
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.64 E-value=6.6 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=17.5
Q ss_pred CCCEEEEecCCchHhHHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~ 201 (588)
..+++++||+|.|||.+.-..+
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHH
Confidence 3599999999999997764433
No 465
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.57 E-value=2 Score=44.36 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=39.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 155 LKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||||||... -.++..+ . ...+.+++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i-~----------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV-A----------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC-C----------CCCcEEEECCccee
Confidence 455555564 4566777776655 5679999999999999543 2222221 1 23456777777776
No 466
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.56 E-value=3.9 Score=44.28 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=54.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
...+||.|+|+.-+..+++.+... ++.+..++|+.+..++...+ + ...+|+||| +.+ ...
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~----------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~-~rG 305 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ----------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVA-ARG 305 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----ccc-ccc
Confidence 456899999999999998888765 67899999998776554433 2 247899999 544 346
Q ss_pred CCCCCcceeeecC
Q 007829 295 MNLDNCRYLTLDE 307 (588)
Q Consensus 295 ~~l~~~~~lIvDE 307 (588)
+++..+++||.-+
T Consensus 306 iDi~~v~~VI~~d 318 (460)
T PRK11776 306 LDIKALEAVINYE 318 (460)
T ss_pred cchhcCCeEEEec
Confidence 6778888877533
No 467
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.40 E-value=1.3 Score=44.12 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCEEEEecCCchHhHHHHH
Q 007829 172 QGLPVVLSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 172 ~~i~~il~g~dvi~~a~TGsGKTl~~~l 199 (588)
+++..+..|+++++.+|+|+|||.++..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3444555899999999999999977543
No 468
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=85.37 E-value=7.9 Score=35.92 Aligned_cols=53 Identities=11% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCcceeeecCCcccccCCCH--HHHHHHHHhhhhcceEEEEeeccchHHHHHHHH
Q 007829 298 DNCRYLTLDEADRLVDLGFE--DDIREVFDHFKAQRQTLLFSATMPTKIQNFARS 350 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~--~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~ 350 (588)
..+++||+||.-..+..|+. +.+..++..-|....+|+.--..|+.+.+.+..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 46889999999998887752 455566665555555666666678887766543
No 469
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.21 E-value=2 Score=48.06 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.1
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp 200 (588)
.+|+.||.|+|||.+..+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999775443
No 470
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.11 E-value=0.47 Score=52.57 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=86.2
Q ss_pred CCCcHHHHHHHHHHh--------cCC--CEEEEecCC--chHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 164 VQPTPIQVQGLPVVL--------SGR--DMIGIAFTG--SGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il--------~g~--dvi~~a~TG--sGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
..++..|.+++-.+- +|. ..++-...| -|.|.+- .++...+. ..+++|++.-+..|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg--iIfeNyLk----------GRKrAlW~SVSsDL 330 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG--IIFENYLK----------GRKRALWFSVSSDL 330 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE--EEehhhhc----------ccceeEEEEecccc
Confidence 366778888876544 332 334444444 4556443 23343333 46789999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCceEEEEE----cCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCC-------CCC
Q 007829 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCI----GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMN-------LDN 299 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~~~~~~----gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-~~~~-------l~~ 299 (588)
-.+..+.+..... ++|.+..+. +..+.++. ...++ .|++||+-.|+---.. .... ++.
T Consensus 331 KfDAERDL~DigA-------~~I~V~alnK~KYakIss~en-~n~kr--GViFaTYtaLIGEs~~~~~kyrtR~rQllqW 400 (1300)
T KOG1513|consen 331 KFDAERDLRDIGA-------TGIAVHALNKFKYAKISSKEN-TNTKR--GVIFATYTALIGESQGKGGKYRTRFRQLLQW 400 (1300)
T ss_pred ccchhhchhhcCC-------CCccceehhhccccccccccc-CCccc--eeEEEeeHhhhhhccccCchHHHHHHHHHHH
Confidence 8877777776532 355544332 11111110 11122 5999999877543321 1100 111
Q ss_pred -----cceeeecCCcccccCC---------CHHHHHHHHHhhhhcceEEEEeecc
Q 007829 300 -----CRYLTLDEADRLVDLG---------FEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 300 -----~~~lIvDEah~l~~~~---------~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
=.+|||||||+-.+.- .+..+..+-+.++.. +++.-|||=
T Consensus 401 ~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~A-RVVYASATG 454 (1300)
T KOG1513|consen 401 CGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNA-RVVYASATG 454 (1300)
T ss_pred hhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCc-eEEEeeccC
Confidence 1489999999976521 234556666666654 588899984
No 471
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.06 E-value=1.4 Score=47.93 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHhcC-CC-EEEEecCCchHhHH
Q 007829 167 TPIQVQGLPVVLSG-RD-MIGIAFTGSGKTLV 196 (588)
Q Consensus 167 ~~~Q~~~i~~il~g-~d-vi~~a~TGsGKTl~ 196 (588)
.+-|.+.+..++.. +. +++++|||||||..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 56677677666643 33 67889999999955
No 472
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.93 E-value=1.5 Score=49.18 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=15.9
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp 200 (588)
..+|+.||.|+|||.++...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 46799999999999765443
No 473
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=1.1 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=17.7
Q ss_pred hcCCCEEEEecCCchHhHHHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~~l 199 (588)
|...|+|+.+|||||||+.+.-
T Consensus 224 LeKSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred eecccEEEECCCCCchhHHHHH
Confidence 3456899999999999976543
No 474
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=84.81 E-value=4.2 Score=45.31 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEE
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLL 335 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~ 335 (588)
+++-.++|+|||..-+|..-+..+...+..+...+.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 455589999999999998777778777776655543333
No 475
>PRK09165 replicative DNA helicase; Provisional
Probab=84.74 E-value=8.9 Score=41.90 Aligned_cols=124 Identities=12% Similarity=0.029 Sum_probs=58.1
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhccc-CC---CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCce
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMM-MP---IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLR 255 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~-~~---~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~ 255 (588)
|.=+++.|+||+|||...+--+.+.+...... .+ .....|..++|+ ..-.-..|+..++-.....+. ...+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~---~~~i- 291 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEIS---SSKI- 291 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCC---HHHH-
Confidence 34567789999999966554444433221100 00 000124566666 444555666665544422110 0011
Q ss_pred EEEEEcCcchHHHHHHHh------cCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCccccc
Q 007829 256 TLLCIGGVDMRSQLEVVK------RGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 256 ~~~~~gg~~~~~~~~~l~------~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~ 313 (588)
..|..+. +.+..+. ....+.|- |+..+...+.+-.. -..+++||||=.+.|..
T Consensus 292 ---~~~~l~~-~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 292 ---RRGKISE-EDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred ---hcCCCCH-HHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 1222221 1222111 12345543 45555444433211 23578999999998864
No 476
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=84.54 E-value=5.4 Score=43.80 Aligned_cols=70 Identities=10% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
...+||.|.|+..|..+...+... ++++..++|+.+.......+. ...+|+||| |.. ...
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~----------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----Dva-aRG 336 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKR----------GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVA-ARG 336 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHC----------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chh-hcc
Confidence 336999999999999988777776 789999999988766654442 358999999 665 346
Q ss_pred CCCCCcceee
Q 007829 295 MNLDNCRYLT 304 (588)
Q Consensus 295 ~~l~~~~~lI 304 (588)
+.+.++.+||
T Consensus 337 iDi~~v~~Vi 346 (513)
T COG0513 337 LDIPDVSHVI 346 (513)
T ss_pred CCccccceeE
Confidence 6677777664
No 477
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=84.46 E-value=1.2 Score=50.04 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=38.6
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
..+++++||||||||..+++|-+.. -+.-++|+=|..|+...+....++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~-------------~~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK-------------WGGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc-------------CCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 3689999999999999999997642 1234788889999988777655554
No 478
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=84.37 E-value=1.6 Score=46.64 Aligned_cols=168 Identities=15% Similarity=0.281 Sum_probs=97.1
Q ss_pred EEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cccC----CCCCCc
Q 007829 397 VLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASKG----LDFPDI 463 (588)
Q Consensus 397 viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~~~G----lDip~v 463 (588)
.|||++|++-|..+..+|.. .++.+..+.|||+....+++++. ..+|+|||+- +..+ =++.++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 89999999999999999865 48999999999999998888876 7789999973 2221 246678
Q ss_pred ceEEecCCCC-----ChhHHHH---Hhc--ccCCCCCcc-EEEEEEc-CCC-----------ChhHHHHHHHHHHHhcCc
Q 007829 464 QHVINYDMPA-----EIENYVH---RIG--RTGRCGKTG-IATTFIN-KNQ-----------SETTLLDLKHLLQEAKQR 520 (588)
Q Consensus 464 ~~VI~~~~p~-----s~~~y~Q---riG--RagR~g~~g-~~~~~~~-~~~-----------~~~~~~~l~~~l~~~~~~ 520 (588)
++.|.-.... ..+.+-| .++ +-.|..++- .+.+|.. ... ....-..+..++++.+-.
T Consensus 342 kcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~ 421 (731)
T KOG0347|consen 342 KCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR 421 (731)
T ss_pred eEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc
Confidence 8866332211 2333333 333 111111111 1111110 000 112334556666666655
Q ss_pred CchHHhhccCchhhHHHHhhccCCCCC------ccc-----CCCCcccccCcchHHHHHHH
Q 007829 521 IPPVLAELNDPMEDVDAITNASGVKGC------AYC-----GGLGHRIRDCPKLEHQKSMA 570 (588)
Q Consensus 521 vp~~l~~l~~~~~~~~~~~~~~~~~~c------~~c-----g~~g~~~~~~~~~~~~~~~~ 570 (588)
-++.+.++.........+.+. .-.| -|| .+.|..+-+|++.++.++..
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es--~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt 480 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTES--LIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLT 480 (731)
T ss_pred CCCeeEecCcchhHHHHHHHH--hhcCCccccceeEEEEEeecCCceEEEechHHHHHHHH
Confidence 555555555443333333221 1223 222 46788888998888876654
No 479
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=84.16 E-value=2.1 Score=42.08 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.2
Q ss_pred HhcCCCEEEEecCCchHhHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~ 196 (588)
+-.|+.+++.++.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34789999999999999953
No 480
>PHA00012 I assembly protein
Probab=84.06 E-value=7 Score=39.65 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCcceeeecCCcccccC-CCH----HHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCC
Q 007829 298 DNCRYLTLDEADRLVDL-GFE----DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~-~~~----~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p 355 (588)
..-.++|+||||..+.. ++. ..+...+...+...--+++..--|..+...++..+...
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~eH 142 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALAEH 142 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhhhe
Confidence 45679999999998862 122 33555455544443334444444556666776655543
No 481
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.05 E-value=0.94 Score=44.10 Aligned_cols=43 Identities=33% Similarity=0.488 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-CEEEEecCCchHhHHHHHHHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGR-DMIGIAFTGSGKTLVFVLPMIM 203 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~-dvi~~a~TGsGKTl~~~lp~l~ 203 (588)
.+.+|++++||+-+.+.- +..| =+|++++|||||+.. +..++.
T Consensus 106 ~IPt~eeL~LPevlk~la-------------------~~kRGLviiVGaTGSGKSTt-mAaMi~ 149 (375)
T COG5008 106 KIPTFEELKLPEVLKDLA-------------------LAKRGLVIIVGATGSGKSTT-MAAMIG 149 (375)
T ss_pred cCCcHHhcCCcHHHHHhh-------------------cccCceEEEECCCCCCchhh-HHHHhc
Confidence 455788888887665532 2222 368889999999965 334443
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.04 E-value=1.4 Score=33.01 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=17.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~ 205 (588)
.|...++.+++|||||.+ +-++..+
T Consensus 22 ~g~~tli~G~nGsGKSTl--lDAi~~~ 46 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL--LDAIQTV 46 (62)
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHHH
Confidence 345689999999999955 4444443
No 483
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.00 E-value=0.98 Score=50.78 Aligned_cols=46 Identities=26% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.+++++||||||||..+++|.+.. -+..+||+=|--|+..-+....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~-------------~~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLS-------------WGHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhh-------------CCCCEEEEeCcHHHHHHHHHHH
Confidence 689999999999999999998753 1335899999999977665544
No 484
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=83.94 E-value=5.7 Score=35.62 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=13.6
Q ss_pred EEEEecCCchHhHHHHHH
Q 007829 183 MIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp 200 (588)
+.++++.|+|||......
T Consensus 2 i~~~G~~GsGKTt~~~~l 19 (148)
T cd03114 2 IGITGVPGAGKSTLIDAL 19 (148)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 567899999999654443
No 485
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.64 E-value=3.5 Score=47.52 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
|..+|++.+-...+.+.|.+. .+..+.-++... +...+.+++.+|+|+|||+++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 344677776666666666543 111111111110 113457899999999999654
No 486
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.58 E-value=2.9 Score=45.35 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
.+.+||.+|++.-+......|...|+.+..++|+.+..++..++..+..|+.+|+++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45799999999999988899999999999999999999999999999999999999996
No 487
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=83.57 E-value=3.9 Score=46.01 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=37.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH--HHHHHHHHHHHHh
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE--LARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~--La~Q~~~~~~~~~ 243 (588)
..++++++|+||+|||..+.+ ++...+. .|..++++=|-.. |...+...++...
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~-l~~q~i~----------~g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAEL-LITQDIR----------RGDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHH-HHHHHHH----------cCCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 357999999999999977644 4434333 2556777778754 7666666666654
No 488
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.52 E-value=2.4 Score=46.77 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=25.3
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEE
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLL 335 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~ 335 (588)
+++-.++|+||+---+|...+..+...+....+.+-+++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVV 524 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 556678999999888776666666666655544443333
No 489
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=83.23 E-value=1 Score=24.69 Aligned_cols=17 Identities=59% Similarity=1.230 Sum_probs=15.6
Q ss_pred CCcccCCCCcccccCcc
Q 007829 546 GCAYCGGLGHRIRDCPK 562 (588)
Q Consensus 546 ~c~~cg~~g~~~~~~~~ 562 (588)
.|-.||..||...+||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 68899999999999995
No 490
>CHL00176 ftsH cell division protein; Validated
Probab=83.18 E-value=3.8 Score=46.07 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
.+.+++.+|+|+|||+.+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999664
No 491
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.15 E-value=3.1 Score=46.10 Aligned_cols=18 Identities=28% Similarity=0.045 Sum_probs=14.9
Q ss_pred CEEEEecCCchHhHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~l 199 (588)
-+++.||.|.|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977544
No 492
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.13 E-value=35 Score=34.80 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=68.7
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP--SRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P--tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
-+++++-.|+|||.. +.=+.+.+.. .|.++++.+- .|+-|.++.+.+-+-. +..++.-
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~~---------~g~~VllaA~DTFRAaAiEQL~~w~er~---------gv~vI~~ 200 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLKQ---------QGKSVLLAAGDTFRAAAIEQLEVWGERL---------GVPVISG 200 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHHH---------CCCeEEEEecchHHHHHHHHHHHHHHHh---------CCeEEcc
Confidence 357779999999966 3334444442 5667766653 4565554444443332 4444332
Q ss_pred EcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCC-CHHHHHHHHHhhhhcc-----eE
Q 007829 260 IGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQR-----QT 333 (588)
Q Consensus 260 ~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~~~-----q~ 333 (588)
..|.+...- ..+.+... .-+.+++|++|=|-||.+.. .-+.+.+|.+-+.+.. .+
T Consensus 201 ~~G~DpAaV-----------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~ 261 (340)
T COG0552 201 KEGADPAAV-----------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEI 261 (340)
T ss_pred CCCCCcHHH-----------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceE
Confidence 122222111 11222221 13566788888888887642 3345555555554332 23
Q ss_pred E-EEeeccchHHHHHHHHh
Q 007829 334 L-LFSATMPTKIQNFARSA 351 (588)
Q Consensus 334 l-~~SAT~~~~i~~~~~~~ 351 (588)
+ .+=||...+-.+-++.+
T Consensus 262 llvlDAttGqnal~QAk~F 280 (340)
T COG0552 262 LLVLDATTGQNALSQAKIF 280 (340)
T ss_pred EEEEEcccChhHHHHHHHH
Confidence 3 44788877655545443
No 493
>PRK06620 hypothetical protein; Validated
Probab=83.11 E-value=6.8 Score=37.55 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=58.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCC-CCceEEEEEcC--cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCC
Q 007829 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGY-PDLRTLLCIGG--VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~-~~i~~~~~~gg--~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~ 296 (588)
.--+|+.++.++|......+.+- ++. |..+..+++|. .....-...+.......+.+...... ..
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~ 82 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EI 82 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hH
Confidence 34589999888877766665431 111 11255778874 33444444444444444444322211 11
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhc-ceEEEEeeccchH
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSATMPTK 343 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~-~q~l~~SAT~~~~ 343 (588)
+...+++++||+|.+.+ ..+..+++.+... .++++.|.|.|+.
T Consensus 83 ~~~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 83 LEKYNAFIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred HhcCCEEEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 34567899999996522 3455666665444 4555555555553
No 494
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=83.06 E-value=6.1 Score=43.10 Aligned_cols=119 Identities=22% Similarity=0.306 Sum_probs=65.0
Q ss_pred EEEEeecc--chHHHHHHHHhccCCeEE-EecCCCCcccceEEEeeehhhH---HHHHHHHHHhhcC-CCCEEEEeCccc
Q 007829 333 TLLFSATM--PTKIQNFARSALVKPVTV-NVGRAGAANLDVIQEVEYVKQE---AKIVYLLECLQKT-PPPVLIFCENKA 405 (588)
Q Consensus 333 ~l~~SAT~--~~~i~~~~~~~l~~p~~i-~~~~~~~~~~~v~~~~~~~~~~---~k~~~ll~~l~~~-~~~viIF~~s~~ 405 (588)
.+.+++|- |..+.+|+..++.....+ .+.+. ....+.+.....+ .+....+..+.+. ...+.|.|.+..
T Consensus 591 ~v~l~~syrSt~eI~efan~~l~d~~~~~p~~rs----ge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~ 666 (747)
T COG3973 591 YVGLIASYRSTAEIDEFANSLLPDRFRIHPLTRS----GEKPAVIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTDH 666 (747)
T ss_pred hhhhhhhhcChHHHHHHHHHhccCCCccchhhcC----CCCceeeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcHH
Confidence 34455553 567788888888731111 11111 1122223333322 3344455555554 457889999999
Q ss_pred cHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC
Q 007829 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 406 ~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
+|..+.+.|+... ++.--...-+.|..|..-+.| -.+.|+-| ++||.||+
T Consensus 667 d~~~~~d~lre~~----------~~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~ 716 (747)
T COG3973 667 DCKAVMDSLREKD----------SQRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDP 716 (747)
T ss_pred HHHHHHHHHhhcc----------hhhHHHhhcccccCCceEEEe---eeccccee---eeEEEecc
Confidence 9999999997542 111111112233344433333 35788887 78888886
No 495
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.97 E-value=5.8 Score=45.74 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
+-.+|++++--...++.+.+. .+..|.-++... +..++.+++.||+|+|||...
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 335677776555555555433 111211111111 124678999999999999553
No 496
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.89 E-value=1.7 Score=48.23 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHH
Q 007829 167 TPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 167 ~~~Q~~~i~~il~--g~dvi~~a~TGsGKTl~~~lp~l~~~ 205 (588)
.+-|.+.|..++. ..-+++++|||||||.. +..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 4666777766553 34577899999999965 34445443
No 497
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=82.62 E-value=9.7 Score=40.79 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~l~~~l~~~ 293 (588)
..|.++|.+.++.-|..+.+.+.+. ++++..++||..-.+....+ +. ..+|+||| |.. ..
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvA-gR 579 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----------GYKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVA-GR 579 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----ccc-cc
Confidence 4678999999999999988888887 78999999998766554433 33 57999999 554 34
Q ss_pred cCCCCCcceee
Q 007829 294 KMNLDNCRYLT 304 (588)
Q Consensus 294 ~~~l~~~~~lI 304 (588)
++...++++||
T Consensus 580 GIDIpnVSlVi 590 (673)
T KOG0333|consen 580 GIDIPNVSLVI 590 (673)
T ss_pred CCCCCccceee
Confidence 56677777765
No 498
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=82.59 E-value=1.3 Score=49.55 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=46.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 151 PEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
++.+.+.+++.+-. .++-...+|... ..++++++|.||||||.+ +.-++..+.. +|.++||.=|+
T Consensus 156 ~~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~----------RGdrAIIyD~~ 222 (732)
T PRK13700 156 PKDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQ----------RGDMVVIYDRS 222 (732)
T ss_pred HHHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHH----------cCCeEEEEeCC
Confidence 46677777776533 445555565543 568999999999999975 3555555544 45566666666
Q ss_pred HHHHHH
Q 007829 229 RELARQ 234 (588)
Q Consensus 229 r~La~Q 234 (588)
-+....
T Consensus 223 GeFv~~ 228 (732)
T PRK13700 223 GEFVKS 228 (732)
T ss_pred CchHHH
Confidence 655443
No 499
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.29 E-value=7.3 Score=42.35 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hhc-CCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VKR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IvV~Tp~~l~~~l~~~ 293 (588)
...++||.|+++.-+..+++.+... ++.+..++|+.+..++... ++. ...|+||| +.+. .
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~-~ 397 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKD----------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAG-R 397 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-c
Confidence 3468999999999998888777654 6778889998877665433 333 57899999 5553 4
Q ss_pred cCCCCCcceeeec
Q 007829 294 KMNLDNCRYLTLD 306 (588)
Q Consensus 294 ~~~l~~~~~lIvD 306 (588)
++++..+++||.-
T Consensus 398 GIDi~~v~~VI~~ 410 (475)
T PRK01297 398 GIHIDGISHVINF 410 (475)
T ss_pred CCcccCCCEEEEe
Confidence 6678888888853
No 500
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=82.27 E-value=1.7 Score=48.48 Aligned_cols=49 Identities=31% Similarity=0.220 Sum_probs=38.3
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+++++||||||||..+++|-+.. -+.-++|+=|.-|+...+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~-------------~~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALK-------------YGGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhc-------------CCCCEEEEEChHHHHHHHHHHHHHc
Confidence 689999999999999999997532 1234788999999988776654444
Done!