Query 007829
Match_columns 588
No_of_seqs 503 out of 3412
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.6E-69 8.9E-74 577.4 47.8 391 129-528 42-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.9E-62 1.7E-66 518.6 43.9 394 131-531 3-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.6E-59 9E-64 496.7 34.3 370 138-522 32-403 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.5E-57 5E-62 483.5 32.2 376 137-527 34-412 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.9E-56 6.6E-61 473.0 37.1 368 140-523 18-386 (400)
6 1xti_A Probable ATP-dependent 100.0 4.8E-56 1.6E-60 468.2 35.4 368 143-523 8-379 (391)
7 1hv8_A Putative ATP-dependent 100.0 6.9E-55 2.4E-59 454.8 39.1 352 141-513 4-356 (367)
8 3fht_A ATP-dependent RNA helic 100.0 4.7E-55 1.6E-59 463.8 35.7 362 139-516 21-394 (412)
9 3pey_A ATP-dependent RNA helic 100.0 8.4E-55 2.9E-59 458.8 37.2 357 140-514 2-369 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 1.2E-54 4E-59 480.9 38.4 356 150-512 28-408 (579)
11 1fuu_A Yeast initiation factor 100.0 1.9E-56 6.6E-61 471.6 22.3 372 138-525 16-389 (394)
12 3i5x_A ATP-dependent RNA helic 100.0 2.2E-54 7.4E-59 477.8 36.8 356 150-512 79-459 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 1.9E-56 6.4E-61 484.6 19.4 372 131-518 77-463 (479)
14 2z0m_A 337AA long hypothetical 100.0 6.6E-52 2.3E-56 427.3 35.8 333 150-514 1-334 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 2.2E-52 7.7E-57 459.8 33.6 331 145-501 23-374 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.6E-50 5.4E-55 440.6 37.1 330 142-501 1-343 (523)
17 3fho_A ATP-dependent RNA helic 100.0 2.6E-52 8.8E-57 454.4 19.5 384 121-522 96-491 (508)
18 3oiy_A Reverse gyrase helicase 100.0 4.3E-50 1.5E-54 426.6 26.8 326 153-515 9-376 (414)
19 1tf5_A Preprotein translocase 100.0 1.9E-48 6.5E-53 429.0 23.6 355 113-503 35-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 4.4E-48 1.5E-52 451.2 26.4 332 143-504 162-600 (1108)
21 4a2p_A RIG-I, retinoic acid in 100.0 7.9E-47 2.7E-51 416.4 25.8 327 162-502 4-509 (556)
22 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-45 5.3E-50 417.8 34.5 336 142-501 7-408 (715)
23 2zj8_A DNA helicase, putative 100.0 2.1E-46 7.4E-51 424.9 26.6 332 144-502 2-388 (720)
24 4ddu_A Reverse gyrase; topoiso 100.0 2.7E-46 9.1E-51 436.1 27.1 324 155-515 68-503 (1104)
25 3tbk_A RIG-I helicase domain; 100.0 1.1E-45 3.7E-50 406.9 29.4 323 164-501 3-507 (555)
26 2ykg_A Probable ATP-dependent 100.0 2.3E-46 7.8E-51 424.0 21.4 333 155-501 3-516 (696)
27 2p6r_A Afuhel308 helicase; pro 100.0 7E-46 2.4E-50 419.5 22.5 330 144-501 2-388 (702)
28 2xgj_A ATP-dependent RNA helic 100.0 2.1E-44 7.1E-49 416.9 34.0 312 162-504 84-502 (1010)
29 2fsf_A Preprotein translocase 100.0 3.2E-45 1.1E-49 402.2 25.6 317 162-502 72-584 (853)
30 4a2q_A RIG-I, retinoic acid in 100.0 4E-45 1.4E-49 418.5 27.4 327 161-501 244-749 (797)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 7.4E-46 2.5E-50 432.6 19.0 324 156-516 48-468 (1054)
32 1wp9_A ATP-dependent RNA helic 100.0 2.9E-43 1E-47 380.1 34.2 319 165-502 9-476 (494)
33 1nkt_A Preprotein translocase 100.0 3.6E-44 1.2E-48 394.1 23.6 318 161-502 108-618 (922)
34 4gl2_A Interferon-induced heli 100.0 2.5E-44 8.6E-49 407.5 18.6 323 164-501 6-518 (699)
35 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-43 4.1E-48 410.7 24.5 327 161-501 244-749 (936)
36 1gm5_A RECG; helicase, replica 100.0 3.4E-43 1.2E-47 394.8 23.5 320 152-501 356-697 (780)
37 4a4z_A Antiviral helicase SKI2 100.0 2E-42 6.7E-47 400.4 29.3 308 162-499 37-490 (997)
38 2eyq_A TRCF, transcription-rep 100.0 1E-40 3.6E-45 391.4 37.6 322 149-501 587-922 (1151)
39 3fe2_A Probable ATP-dependent 100.0 5.4E-41 1.9E-45 330.0 27.9 238 117-363 3-240 (242)
40 4f92_B U5 small nuclear ribonu 100.0 6.2E-41 2.1E-45 403.8 33.2 331 150-501 911-1308(1724)
41 2whx_A Serine protease/ntpase/ 100.0 7.6E-43 2.6E-47 385.2 12.1 323 148-523 155-502 (618)
42 4f92_B U5 small nuclear ribonu 100.0 1.3E-40 4.5E-45 401.0 30.1 340 150-503 66-475 (1724)
43 2jlq_A Serine protease subunit 100.0 8.4E-42 2.9E-46 365.8 16.2 288 162-501 1-311 (451)
44 2oca_A DAR protein, ATP-depend 100.0 3.3E-41 1.1E-45 367.9 18.4 310 163-499 111-453 (510)
45 1yks_A Genome polyprotein [con 100.0 3.1E-42 1.1E-46 367.5 4.0 290 176-524 4-324 (440)
46 3o8b_A HCV NS3 protease/helica 100.0 8.2E-41 2.8E-45 365.8 11.3 278 165-504 217-517 (666)
47 2wv9_A Flavivirin protease NS2 100.0 2.1E-40 7.1E-45 368.0 13.6 314 157-521 202-555 (673)
48 2xau_A PRE-mRNA-splicing facto 100.0 1.5E-39 5.1E-44 367.6 17.0 334 139-501 68-443 (773)
49 2fwr_A DNA repair protein RAD2 100.0 3.5E-39 1.2E-43 348.4 18.2 293 164-502 92-455 (472)
50 2z83_A Helicase/nucleoside tri 100.0 2.5E-39 8.5E-44 347.2 14.0 276 171-501 12-313 (459)
51 1wrb_A DJVLGB; RNA helicase, D 100.0 1.3E-37 4.4E-42 308.0 21.5 239 129-373 7-252 (253)
52 3iuy_A Probable ATP-dependent 100.0 2.7E-37 9.3E-42 300.7 21.3 217 135-360 11-228 (228)
53 2v6i_A RNA helicase; membrane, 100.0 2.1E-37 7.1E-42 329.6 21.1 270 179-499 1-289 (431)
54 3dkp_A Probable ATP-dependent 100.0 8.6E-37 2.9E-41 300.6 20.0 230 121-363 3-243 (245)
55 3fmo_B ATP-dependent RNA helic 100.0 1.8E-36 6.2E-41 306.8 21.6 216 130-361 76-298 (300)
56 3bor_A Human initiation factor 100.0 2E-36 6.8E-41 296.4 20.7 214 134-361 21-235 (237)
57 3h1t_A Type I site-specific re 100.0 1.1E-36 3.6E-41 338.0 21.0 303 165-490 178-545 (590)
58 3ber_A Probable ATP-dependent 100.0 6.9E-36 2.4E-40 294.6 23.8 207 141-361 41-248 (249)
59 2oxc_A Probable ATP-dependent 100.0 6.7E-36 2.3E-40 291.3 21.6 212 135-360 16-228 (230)
60 2pl3_A Probable ATP-dependent 100.0 1.8E-35 6.3E-40 289.3 24.5 227 119-361 6-233 (236)
61 3rc3_A ATP-dependent RNA helic 100.0 5.8E-36 2E-40 331.3 22.1 279 169-498 144-442 (677)
62 1q0u_A Bstdead; DEAD protein, 100.0 7.2E-36 2.5E-40 288.8 18.9 212 141-362 2-213 (219)
63 1vec_A ATP-dependent RNA helic 100.0 3.3E-35 1.1E-39 281.2 23.2 203 143-358 3-205 (206)
64 1qde_A EIF4A, translation init 100.0 2.5E-35 8.5E-40 285.9 21.4 212 136-362 7-218 (224)
65 3dmq_A RNA polymerase-associat 100.0 2.8E-35 9.5E-40 341.2 23.2 317 164-499 152-611 (968)
66 2gxq_A Heat resistant RNA depe 100.0 1.5E-34 5.2E-39 276.7 24.2 204 144-360 2-205 (207)
67 3ly5_A ATP-dependent RNA helic 100.0 1E-34 3.5E-39 288.4 22.6 204 143-356 52-258 (262)
68 3jux_A Protein translocase sub 100.0 9.4E-34 3.2E-38 305.1 31.0 314 162-502 73-588 (822)
69 1t6n_A Probable ATP-dependent 100.0 1.8E-34 6.2E-39 279.1 21.4 210 137-359 8-219 (220)
70 1z63_A Helicase of the SNF2/RA 100.0 1.3E-34 4.5E-39 315.0 22.2 308 164-501 36-453 (500)
71 3mwy_W Chromo domain-containin 100.0 1.3E-32 4.3E-37 314.4 25.0 369 106-502 180-685 (800)
72 1z3i_X Similar to RAD54-like; 100.0 1.1E-30 3.8E-35 291.2 35.9 321 165-502 55-529 (644)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.6E-32 1.9E-36 311.4 24.8 308 165-499 271-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 4.8E-31 1.6E-35 248.7 18.5 183 348-530 8-190 (191)
75 2ipc_A Preprotein translocase 100.0 2.9E-28 1E-32 267.0 34.0 315 161-502 76-699 (997)
76 1c4o_A DNA nucleotide excision 100.0 1.5E-28 5E-33 273.9 27.1 109 392-501 437-550 (664)
77 2d7d_A Uvrabc system protein B 100.0 3.6E-27 1.2E-31 262.6 28.8 167 329-501 385-556 (661)
78 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.7E-28 1.3E-32 227.8 16.9 166 364-530 14-181 (185)
79 2hjv_A ATP-dependent RNA helic 99.9 1.4E-26 4.9E-31 212.7 17.2 148 365-513 5-153 (163)
80 1t5i_A C_terminal domain of A 99.9 4E-27 1.4E-31 218.3 13.2 157 368-524 4-161 (172)
81 1fuk_A Eukaryotic initiation f 99.9 1.4E-26 4.9E-31 213.1 13.4 156 369-525 3-160 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 7.6E-26 2.6E-30 210.4 15.7 146 367-513 5-158 (175)
83 3eaq_A Heat resistant RNA depe 99.9 3.5E-25 1.2E-29 212.3 15.5 141 374-515 10-151 (212)
84 3i32_A Heat resistant RNA depe 99.9 2.6E-24 8.9E-29 216.2 15.0 143 370-513 3-146 (300)
85 3b6e_A Interferon-induced heli 99.9 2.5E-24 8.4E-29 206.8 14.0 166 162-339 30-216 (216)
86 2vl7_A XPD; helicase, unknown 99.9 6E-24 2.1E-28 232.1 13.9 303 161-500 4-520 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 1.1E-25 3.7E-30 208.3 0.0 144 370-514 4-149 (170)
88 3llm_A ATP-dependent RNA helic 99.9 1E-21 3.5E-26 191.5 16.9 182 153-356 49-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 3.3E-20 1.1E-24 203.2 27.9 307 165-501 3-531 (551)
90 1rif_A DAR protein, DNA helica 99.9 4.9E-22 1.7E-26 199.3 10.6 155 164-344 112-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 5.5E-19 1.9E-23 172.1 16.5 139 164-343 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 3.6E-18 1.2E-22 188.6 23.3 111 386-500 440-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 9.8E-19 3.3E-23 173.4 12.5 124 379-502 94-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 3.5E-09 1.2E-13 116.7 8.7 145 167-339 151-298 (608)
95 2gk6_A Regulator of nonsense t 98.1 2.7E-05 9.4E-10 86.0 15.0 70 163-242 178-247 (624)
96 2xzl_A ATP-dependent helicase 98.1 3.5E-05 1.2E-09 87.2 15.1 70 163-242 358-427 (802)
97 4b3f_X DNA-binding protein smu 98.1 8.4E-06 2.9E-10 90.6 9.9 68 164-242 188-256 (646)
98 3hgt_A HDA1 complex subunit 3; 98.0 3.5E-05 1.2E-09 76.6 12.2 118 380-502 111-238 (328)
99 2wjy_A Regulator of nonsense t 98.0 6.2E-05 2.1E-09 85.1 14.4 70 163-242 354-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.9 2.3E-05 7.8E-10 85.4 10.3 126 165-338 189-314 (574)
101 3lfu_A DNA helicase II; SF1 he 97.9 0.00045 1.5E-08 76.7 21.1 72 164-244 8-79 (647)
102 3upu_A ATP-dependent DNA helic 97.9 5.2E-05 1.8E-09 80.6 10.8 69 161-239 21-94 (459)
103 2o0j_A Terminase, DNA packagin 97.3 0.0027 9.3E-08 65.1 14.0 73 165-246 163-235 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.013 4.5E-07 64.0 16.6 73 165-246 163-235 (592)
105 3ec2_A DNA replication protein 96.9 0.005 1.7E-07 55.9 10.2 32 167-198 16-56 (180)
106 2kjq_A DNAA-related protein; s 96.2 0.0043 1.5E-07 54.7 5.1 42 298-340 82-124 (149)
107 3vkw_A Replicase large subunit 96.1 0.012 4.3E-07 61.0 8.3 107 182-339 163-269 (446)
108 1xx6_A Thymidine kinase; NESG, 95.9 0.019 6.5E-07 52.8 8.1 40 179-229 7-46 (191)
109 2j9r_A Thymidine kinase; TK1, 95.9 0.01 3.5E-07 55.4 6.2 40 180-230 28-67 (214)
110 2orw_A Thymidine kinase; TMTK, 95.9 0.011 3.8E-07 54.1 6.3 40 179-229 2-41 (184)
111 3te6_A Regulatory protein SIR3 95.9 0.077 2.6E-06 52.8 12.7 21 179-199 44-64 (318)
112 1l8q_A Chromosomal replication 95.8 0.043 1.5E-06 54.9 10.6 18 180-197 37-54 (324)
113 2b8t_A Thymidine kinase; deoxy 95.7 0.01 3.4E-07 56.1 5.2 92 179-312 11-102 (223)
114 2z4s_A Chromosomal replication 95.4 0.09 3.1E-06 55.1 11.6 43 299-341 194-238 (440)
115 3kl4_A SRP54, signal recogniti 95.4 0.081 2.8E-06 55.0 11.1 54 298-351 178-234 (433)
116 2orv_A Thymidine kinase; TP4A 95.3 0.029 1E-06 52.8 6.9 40 179-229 18-57 (234)
117 1uaa_A REP helicase, protein ( 95.3 0.023 7.9E-07 63.1 7.3 71 165-244 2-72 (673)
118 1pjr_A PCRA; DNA repair, DNA r 95.2 0.038 1.3E-06 61.9 8.8 72 164-244 10-81 (724)
119 1d2n_A N-ethylmaleimide-sensit 94.9 0.21 7.1E-06 48.3 12.2 18 181-198 65-82 (272)
120 2w58_A DNAI, primosome compone 94.8 0.12 3.9E-06 47.6 9.5 17 181-197 55-71 (202)
121 3bos_A Putative DNA replicatio 94.7 0.042 1.4E-06 51.8 6.3 19 179-197 51-69 (242)
122 3e2i_A Thymidine kinase; Zn-bi 94.5 0.035 1.2E-06 51.7 5.0 41 179-230 27-67 (219)
123 2qgz_A Helicase loader, putati 94.5 0.18 6.2E-06 50.0 10.6 19 180-198 152-170 (308)
124 3u4q_A ATP-dependent helicase/ 94.5 0.055 1.9E-06 64.3 7.8 73 164-243 9-81 (1232)
125 1w4r_A Thymidine kinase; type 94.5 0.053 1.8E-06 49.7 6.0 39 179-228 19-57 (195)
126 2zpa_A Uncharacterized protein 94.3 0.066 2.2E-06 58.5 7.4 112 165-340 175-288 (671)
127 2chg_A Replication factor C sm 94.1 0.53 1.8E-05 43.2 12.4 39 298-337 101-139 (226)
128 1fnn_A CDC6P, cell division co 94.0 0.19 6.4E-06 51.2 10.0 16 182-197 46-61 (389)
129 1g5t_A COB(I)alamin adenosyltr 94.0 0.25 8.7E-06 45.2 9.6 52 297-348 118-171 (196)
130 1gm5_A RECG; helicase, replica 94.0 0.1 3.4E-06 58.7 8.1 75 393-467 416-495 (780)
131 2v1u_A Cell division control p 93.8 0.26 8.8E-06 50.0 10.5 19 179-197 43-61 (387)
132 2p65_A Hypothetical protein PF 93.8 0.22 7.6E-06 44.5 8.9 18 180-197 43-60 (187)
133 2p6n_A ATP-dependent RNA helic 93.4 0.64 2.2E-05 42.4 11.4 72 219-306 54-129 (191)
134 1a5t_A Delta prime, HOLB; zinc 93.3 0.29 1E-05 49.0 9.6 34 166-199 3-43 (334)
135 2hjv_A ATP-dependent RNA helic 93.2 0.56 1.9E-05 41.4 10.3 74 218-307 34-111 (163)
136 3dm5_A SRP54, signal recogniti 93.2 0.62 2.1E-05 48.4 12.0 54 299-352 182-236 (443)
137 2r6a_A DNAB helicase, replicat 92.9 0.54 1.9E-05 49.3 11.3 39 179-227 202-240 (454)
138 2qby_B CDC6 homolog 3, cell di 92.8 0.27 9.2E-06 50.0 8.7 18 180-197 45-62 (384)
139 3pfi_A Holliday junction ATP-d 92.4 0.45 1.5E-05 47.5 9.6 17 181-197 56-72 (338)
140 2dr3_A UPF0273 protein PH0284; 92.3 1.1 3.9E-05 42.0 11.9 51 179-241 22-72 (247)
141 3eaq_A Heat resistant RNA depe 92.2 0.8 2.7E-05 42.4 10.4 72 218-305 30-105 (212)
142 3u61_B DNA polymerase accessor 92.2 0.85 2.9E-05 45.1 11.2 40 298-337 104-143 (324)
143 2q6t_A DNAB replication FORK h 92.2 0.56 1.9E-05 49.0 10.2 116 179-314 199-325 (444)
144 1fuk_A Eukaryotic initiation f 92.0 0.89 3E-05 40.1 10.1 74 218-307 29-106 (165)
145 2rb4_A ATP-dependent RNA helic 92.0 0.63 2.2E-05 41.6 9.1 72 218-305 33-108 (175)
146 3oiy_A Reverse gyrase helicase 91.9 0.39 1.3E-05 49.4 8.7 76 392-467 62-144 (414)
147 3syl_A Protein CBBX; photosynt 91.8 0.22 7.6E-06 49.0 6.3 19 180-198 67-85 (309)
148 2qby_A CDC6 homolog 1, cell di 91.7 0.37 1.3E-05 48.8 8.1 18 180-197 45-62 (386)
149 1t5i_A C_terminal domain of A 91.2 0.81 2.8E-05 40.8 8.9 74 218-307 30-107 (172)
150 1sxj_E Activator 1 40 kDa subu 90.9 0.54 1.8E-05 47.2 8.3 43 297-340 132-174 (354)
151 3pvs_A Replication-associated 90.5 0.73 2.5E-05 48.1 9.0 17 181-197 51-67 (447)
152 2w0m_A SSO2452; RECA, SSPF, un 90.5 1.3 4.6E-05 40.9 10.2 21 179-199 22-42 (235)
153 1iqp_A RFCS; clamp loader, ext 90.4 1.3 4.4E-05 43.6 10.5 43 298-342 109-151 (327)
154 4b4t_J 26S protease regulatory 90.4 0.23 8E-06 50.8 4.9 54 141-197 143-199 (405)
155 1sxj_D Activator 1 41 kDa subu 90.3 1 3.6E-05 44.9 9.8 39 298-337 132-170 (353)
156 4a1f_A DNAB helicase, replicat 90.2 0.35 1.2E-05 48.4 5.9 50 179-240 45-94 (338)
157 1n0w_A DNA repair protein RAD5 89.8 1.9 6.4E-05 40.3 10.7 23 179-201 23-45 (243)
158 2gno_A DNA polymerase III, gam 89.6 0.99 3.4E-05 44.5 8.7 45 297-343 80-124 (305)
159 1hqc_A RUVB; extended AAA-ATPa 89.6 0.7 2.4E-05 45.6 7.7 18 180-197 38-55 (324)
160 1cr0_A DNA primase/helicase; R 89.4 0.63 2.2E-05 45.5 7.1 22 179-200 34-55 (296)
161 2px0_A Flagellar biosynthesis 89.1 1.8 6.2E-05 42.4 10.1 21 179-199 104-124 (296)
162 2jgn_A DBX, DDX3, ATP-dependen 88.7 1.3 4.3E-05 40.1 8.1 72 218-305 45-120 (185)
163 2eyq_A TRCF, transcription-rep 88.4 1 3.5E-05 53.0 9.0 76 392-467 650-730 (1151)
164 2i4i_A ATP-dependent RNA helic 88.0 1.9 6.5E-05 44.0 10.0 72 218-305 275-350 (417)
165 4ddu_A Reverse gyrase; topoiso 87.9 0.95 3.2E-05 52.9 8.3 77 392-468 119-202 (1104)
166 2z43_A DNA repair and recombin 87.9 1.9 6.3E-05 42.9 9.5 59 179-242 106-165 (324)
167 3hjh_A Transcription-repair-co 87.7 2 6.9E-05 45.2 9.9 51 179-243 13-63 (483)
168 1t6n_A Probable ATP-dependent 87.6 2.3 7.8E-05 39.2 9.3 71 394-467 82-163 (220)
169 3i5x_A ATP-dependent RNA helic 87.5 4.9 0.00017 42.9 13.3 78 218-308 338-419 (563)
170 3i32_A Heat resistant RNA depe 87.4 2.1 7.1E-05 42.1 9.2 71 219-305 28-102 (300)
171 3cmu_A Protein RECA, recombina 87.1 0.89 3E-05 55.8 7.5 47 174-231 1415-1467(2050)
172 2ehv_A Hypothetical protein PH 86.8 0.84 2.9E-05 43.0 5.9 46 298-343 134-184 (251)
173 1sxj_C Activator 1 40 kDa subu 86.7 1.8 6.1E-05 43.2 8.6 38 298-336 109-146 (340)
174 2cvh_A DNA repair and recombin 86.6 4.3 0.00015 37.0 10.7 22 179-200 19-40 (220)
175 3bh0_A DNAB-like replicative h 86.6 3.7 0.00013 40.5 10.7 52 179-242 67-118 (315)
176 3m6a_A ATP-dependent protease 86.1 0.81 2.8E-05 49.1 5.9 19 179-197 107-125 (543)
177 3sqw_A ATP-dependent RNA helic 86.1 6.8 0.00023 42.1 13.4 79 218-309 287-369 (579)
178 3hu3_A Transitional endoplasmi 85.9 0.95 3.2E-05 47.9 6.3 19 179-197 237-255 (489)
179 3hr8_A Protein RECA; alpha and 85.9 1.6 5.4E-05 44.0 7.6 42 179-231 60-101 (356)
180 1w5s_A Origin recognition comp 85.9 1.4 4.9E-05 44.9 7.6 17 181-197 51-69 (412)
181 3co5_A Putative two-component 85.9 0.61 2.1E-05 40.1 4.0 20 177-196 24-43 (143)
182 1sxj_B Activator 1 37 kDa subu 85.6 1.4 4.8E-05 43.2 7.1 38 299-337 107-144 (323)
183 3fe2_A Probable ATP-dependent 85.4 2.3 7.8E-05 40.0 8.2 72 393-468 101-182 (242)
184 1nlf_A Regulatory protein REPA 85.4 11 0.00038 36.1 13.3 25 177-201 27-51 (279)
185 1sxj_A Activator 1 95 kDa subu 85.4 1.2 3.9E-05 47.6 6.7 17 181-197 78-94 (516)
186 3n70_A Transport activator; si 85.3 0.61 2.1E-05 40.2 3.7 20 178-197 22-41 (145)
187 1e9r_A Conjugal transfer prote 85.0 0.85 2.9E-05 47.4 5.4 44 179-233 52-95 (437)
188 3fht_A ATP-dependent RNA helic 84.3 6.5 0.00022 39.7 11.7 72 218-305 265-340 (412)
189 1ls1_A Signal recognition part 84.2 7.2 0.00025 38.0 11.4 21 179-199 97-117 (295)
190 1hv8_A Putative ATP-dependent 83.7 2.5 8.6E-05 42.0 8.1 74 218-307 237-314 (367)
191 2l8b_A Protein TRAI, DNA helic 83.5 1.1 3.7E-05 40.3 4.5 59 166-234 35-95 (189)
192 1oyw_A RECQ helicase, ATP-depe 83.4 1.6 5.6E-05 46.5 6.8 59 394-452 65-123 (523)
193 2v1x_A ATP-dependent DNA helic 83.1 1.4 4.9E-05 47.7 6.2 59 394-452 84-144 (591)
194 3ber_A Probable ATP-dependent 82.9 4.6 0.00016 38.2 9.1 71 394-468 111-192 (249)
195 2i1q_A DNA repair and recombin 82.7 2.3 8E-05 42.0 7.2 23 179-201 97-119 (322)
196 3bgw_A DNAB-like replicative h 82.6 2.3 7.9E-05 44.3 7.4 50 179-240 196-245 (444)
197 1jr3_A DNA polymerase III subu 82.2 5.8 0.0002 39.6 10.2 16 182-197 40-55 (373)
198 2eyu_A Twitching motility prot 81.7 0.75 2.6E-05 44.3 3.0 21 177-197 22-42 (261)
199 1s2m_A Putative ATP-dependent 81.6 6.3 0.00022 39.7 10.3 73 218-306 257-333 (400)
200 3pey_A ATP-dependent RNA helic 81.5 4.2 0.00014 40.8 8.9 77 218-310 242-322 (395)
201 3e70_C DPA, signal recognition 81.2 14 0.00047 36.6 12.2 53 299-351 211-264 (328)
202 1xti_A Probable ATP-dependent 81.1 4.1 0.00014 41.0 8.6 76 218-309 249-328 (391)
203 3bor_A Human initiation factor 81.1 3.3 0.00011 38.7 7.3 73 393-468 97-179 (237)
204 2d7d_A Uvrabc system protein B 80.9 3.3 0.00011 45.5 8.2 78 218-311 444-525 (661)
205 2yhs_A FTSY, cell division pro 80.7 11 0.00038 39.5 11.6 53 299-351 375-434 (503)
206 3dmn_A Putative DNA helicase; 80.4 14 0.00049 32.6 11.0 64 393-471 60-123 (174)
207 1v5w_A DMC1, meiotic recombina 80.1 4.7 0.00016 40.3 8.4 63 174-241 111-179 (343)
208 2db3_A ATP-dependent RNA helic 80.1 5.6 0.00019 41.0 9.3 69 221-305 302-374 (434)
209 2gxq_A Heat resistant RNA depe 80.0 4.2 0.00014 36.7 7.5 72 393-468 71-150 (207)
210 2pl3_A Probable ATP-dependent 79.6 2.9 0.0001 38.9 6.4 70 393-467 96-176 (236)
211 1vec_A ATP-dependent RNA helic 79.6 4.3 0.00015 36.7 7.4 70 394-467 71-151 (206)
212 3hws_A ATP-dependent CLP prote 79.4 2.6 9E-05 42.4 6.4 19 179-197 50-68 (363)
213 2j0s_A ATP-dependent RNA helic 79.4 4.9 0.00017 40.8 8.6 71 219-305 276-350 (410)
214 3cf2_A TER ATPase, transitiona 79.3 2.6 8.9E-05 47.2 6.7 54 141-197 472-528 (806)
215 2fna_A Conserved hypothetical 79.2 49 0.0017 32.2 16.4 54 282-340 123-179 (357)
216 2oxc_A Probable ATP-dependent 79.1 3.2 0.00011 38.6 6.5 70 393-467 91-171 (230)
217 3iuy_A Probable ATP-dependent 78.9 3.1 0.00011 38.5 6.3 72 393-468 93-173 (228)
218 2oap_1 GSPE-2, type II secreti 78.8 2.6 8.9E-05 44.7 6.3 40 155-196 236-276 (511)
219 1c4o_A DNA nucleotide excision 78.4 5.6 0.00019 43.7 9.0 78 218-311 438-519 (664)
220 1qvr_A CLPB protein; coiled co 78.3 5.6 0.00019 45.1 9.3 19 180-198 191-209 (854)
221 2yjt_D ATP-dependent RNA helic 79.6 0.44 1.5E-05 42.4 0.0 73 218-306 29-105 (170)
222 1wp9_A ATP-dependent RNA helic 77.4 9.8 0.00033 39.1 10.3 76 218-309 360-447 (494)
223 3ly5_A ATP-dependent RNA helic 77.4 8.3 0.00028 36.6 9.0 72 393-468 125-207 (262)
224 4b4t_M 26S protease regulatory 77.3 0.98 3.3E-05 46.8 2.4 55 140-197 175-232 (434)
225 3jvv_A Twitching mobility prot 76.9 2.2 7.4E-05 43.0 4.8 18 179-196 122-139 (356)
226 2ffh_A Protein (FFH); SRP54, s 76.4 22 0.00075 36.5 12.2 21 179-199 97-117 (425)
227 1gku_B Reverse gyrase, TOP-RG; 76.2 4.4 0.00015 47.2 7.7 76 390-467 95-180 (1054)
228 3b85_A Phosphate starvation-in 76.2 2.6 8.9E-05 38.9 4.8 35 163-197 5-39 (208)
229 3io5_A Recombination and repai 75.7 5 0.00017 39.6 6.8 42 182-232 30-71 (333)
230 3cmu_A Protein RECA, recombina 74.6 6.2 0.00021 48.6 8.5 46 179-236 1080-1125(2050)
231 3nbx_X ATPase RAVA; AAA+ ATPas 74.3 3.4 0.00011 43.7 5.6 35 163-197 24-58 (500)
232 1wrb_A DJVLGB; RNA helicase, D 74.3 11 0.00036 35.4 8.8 70 394-467 100-179 (253)
233 1yks_A Genome polyprotein [con 74.2 4 0.00014 42.3 6.1 68 219-304 177-245 (440)
234 3lda_A DNA repair protein RAD5 73.8 21 0.00072 36.3 11.3 51 173-228 166-221 (400)
235 4ag6_A VIRB4 ATPase, type IV s 73.5 2.5 8.6E-05 43.1 4.3 42 179-231 34-75 (392)
236 2zts_A Putative uncharacterize 73.5 2.8 9.7E-05 39.2 4.4 53 179-242 29-81 (251)
237 1kgd_A CASK, peripheral plasma 73.4 1.8 6.3E-05 38.6 2.9 19 179-197 4-22 (180)
238 3cmw_A Protein RECA, recombina 73.1 5.2 0.00018 48.5 7.4 129 172-344 1417-1571(1706)
239 1p9r_A General secretion pathw 72.9 4.8 0.00017 41.4 6.3 27 170-196 155-183 (418)
240 2j37_W Signal recognition part 72.6 26 0.00089 36.9 11.9 19 181-199 102-120 (504)
241 1qde_A EIF4A, translation init 72.4 5.8 0.0002 36.4 6.3 70 393-467 81-160 (224)
242 3h4m_A Proteasome-activating n 72.2 1.7 5.6E-05 42.0 2.4 55 141-197 12-68 (285)
243 3a8t_A Adenylate isopentenyltr 71.8 2 6.7E-05 42.9 2.8 18 180-197 40-57 (339)
244 2gza_A Type IV secretion syste 71.6 2.5 8.7E-05 42.6 3.7 20 177-196 172-191 (361)
245 2qz4_A Paraplegin; AAA+, SPG7, 71.6 1.9 6.5E-05 40.8 2.7 19 179-197 38-56 (262)
246 3cf0_A Transitional endoplasmi 71.5 1.9 6.4E-05 42.3 2.7 56 141-197 10-66 (301)
247 1ofh_A ATP-dependent HSL prote 71.2 8.1 0.00028 37.3 7.3 19 179-197 49-67 (310)
248 2r44_A Uncharacterized protein 70.7 3 0.0001 41.3 4.0 23 175-197 41-63 (331)
249 1jbk_A CLPB protein; beta barr 70.7 2.4 8.1E-05 37.5 3.0 18 180-197 43-60 (195)
250 3vaa_A Shikimate kinase, SK; s 70.1 2.5 8.5E-05 38.4 3.0 20 179-198 24-43 (199)
251 2bjv_A PSP operon transcriptio 70.0 3 0.0001 39.7 3.7 19 179-197 28-46 (265)
252 1lvg_A Guanylate kinase, GMP k 69.9 2.6 8.9E-05 38.4 3.1 19 179-197 3-21 (198)
253 3trf_A Shikimate kinase, SK; a 69.7 2.5 8.7E-05 37.6 3.0 20 180-199 5-24 (185)
254 1qhx_A CPT, protein (chloramph 69.5 2 6.9E-05 38.0 2.2 18 180-197 3-20 (178)
255 4akg_A Glutathione S-transfera 69.4 4.8 0.00016 51.2 6.1 49 150-199 890-942 (2695)
256 3iij_A Coilin-interacting nucl 68.6 2.2 7.5E-05 37.9 2.3 21 178-198 9-29 (180)
257 3tau_A Guanylate kinase, GMP k 68.3 2.8 9.7E-05 38.4 3.0 19 179-197 7-25 (208)
258 3foz_A TRNA delta(2)-isopenten 68.2 2.6 8.9E-05 41.4 2.8 16 182-197 12-27 (316)
259 2oca_A DAR protein, ATP-depend 68.2 13 0.00043 39.1 8.5 76 219-309 347-426 (510)
260 3exa_A TRNA delta(2)-isopenten 68.0 2.4 8.2E-05 41.8 2.5 17 181-197 4-20 (322)
261 3o8b_A HCV NS3 protease/helica 67.6 5.1 0.00017 43.8 5.2 67 218-304 395-461 (666)
262 3ney_A 55 kDa erythrocyte memb 67.0 3.1 0.00011 38.0 2.9 20 178-197 17-36 (197)
263 2qmh_A HPR kinase/phosphorylas 66.9 2.6 8.8E-05 38.6 2.3 19 179-197 33-51 (205)
264 2v6i_A RNA helicase; membrane, 66.8 7.8 0.00027 40.0 6.4 67 219-303 171-238 (431)
265 2pt7_A CAG-ALFA; ATPase, prote 66.6 3.1 0.00011 41.4 3.1 19 178-196 169-187 (330)
266 1u0j_A DNA replication protein 66.5 11 0.00036 36.2 6.7 44 152-198 73-122 (267)
267 1um8_A ATP-dependent CLP prote 65.6 11 0.00037 38.0 7.0 19 180-198 72-90 (376)
268 2ze6_A Isopentenyl transferase 65.5 3.2 0.00011 39.5 2.8 15 183-197 4-18 (253)
269 3eiq_A Eukaryotic initiation f 65.2 5.9 0.0002 40.1 5.0 72 218-305 279-354 (414)
270 1ex7_A Guanylate kinase; subst 64.9 3 0.0001 37.7 2.4 16 181-196 2-17 (186)
271 2j41_A Guanylate kinase; GMP, 64.9 3.5 0.00012 37.3 2.9 20 178-197 4-23 (207)
272 3dkp_A Probable ATP-dependent 64.8 3 0.0001 39.1 2.5 73 393-468 97-181 (245)
273 3lw7_A Adenylate kinase relate 64.7 2.8 9.5E-05 36.6 2.1 16 182-197 3-18 (179)
274 2xxa_A Signal recognition part 64.6 19 0.00063 37.2 8.6 21 181-201 101-121 (433)
275 2wv9_A Flavivirin protease NS2 64.3 7.4 0.00025 42.7 5.8 69 218-304 409-478 (673)
276 1zp6_A Hypothetical protein AT 64.0 3.4 0.00012 36.9 2.6 19 179-197 8-26 (191)
277 1kag_A SKI, shikimate kinase I 63.9 4.3 0.00015 35.5 3.2 18 180-197 4-21 (173)
278 1z5z_A Helicase of the SNF2/RA 63.8 24 0.00082 33.7 8.8 95 188-308 92-192 (271)
279 2xau_A PRE-mRNA-splicing facto 63.6 13 0.00043 41.6 7.6 82 218-305 302-393 (773)
280 1y63_A LMAJ004144AAA protein; 63.6 4.1 0.00014 36.4 3.0 19 179-197 9-27 (184)
281 2qor_A Guanylate kinase; phosp 63.4 4.5 0.00015 36.8 3.3 20 178-197 10-29 (204)
282 4b4t_L 26S protease subunit RP 63.3 2.4 8.2E-05 43.9 1.5 55 140-197 175-232 (437)
283 1j8m_F SRP54, signal recogniti 63.2 57 0.002 31.5 11.5 20 180-199 98-117 (297)
284 3nwj_A ATSK2; P loop, shikimat 63.1 4.8 0.00016 38.2 3.5 21 178-198 46-66 (250)
285 3rc3_A ATP-dependent RNA helic 63.0 16 0.00056 40.0 8.3 73 222-311 323-401 (677)
286 1vma_A Cell division protein F 62.9 36 0.0012 33.1 10.0 20 179-198 103-122 (306)
287 3tr0_A Guanylate kinase, GMP k 62.6 4.3 0.00015 36.7 3.0 19 179-197 6-24 (205)
288 3crm_A TRNA delta(2)-isopenten 62.5 3.8 0.00013 40.5 2.8 16 182-197 7-22 (323)
289 1kht_A Adenylate kinase; phosp 62.5 3.3 0.00011 36.8 2.2 19 179-197 2-20 (192)
290 2l82_A Designed protein OR32; 62.4 31 0.001 27.5 7.4 51 397-447 5-55 (162)
291 1tf7_A KAIC; homohexamer, hexa 62.4 46 0.0016 35.0 11.5 21 179-199 280-300 (525)
292 2jlq_A Serine protease subunit 62.2 8.9 0.00031 39.8 5.8 68 219-304 188-256 (451)
293 3a00_A Guanylate kinase, GMP k 62.1 4.7 0.00016 36.1 3.1 17 181-197 2-18 (186)
294 4b4t_I 26S protease regulatory 62.1 3.7 0.00013 42.3 2.6 55 140-197 176-233 (437)
295 1ojl_A Transcriptional regulat 61.8 4.9 0.00017 39.3 3.5 19 179-197 24-42 (304)
296 1z6g_A Guanylate kinase; struc 61.7 5 0.00017 37.0 3.4 20 178-197 21-40 (218)
297 3uk6_A RUVB-like 2; hexameric 61.5 4.2 0.00014 40.7 3.0 19 180-198 70-88 (368)
298 2x8a_A Nuclear valosin-contain 60.9 1.7 5.9E-05 42.0 -0.1 54 141-197 5-61 (274)
299 3b9p_A CG5977-PA, isoform A; A 60.8 4.2 0.00014 39.3 2.8 19 179-197 53-71 (297)
300 2lnd_A De novo designed protei 60.7 50 0.0017 24.7 7.9 62 379-441 36-99 (112)
301 1wv9_A Rhodanese homolog TT165 60.4 6.3 0.00021 30.8 3.3 35 395-429 54-88 (94)
302 3nwn_A Kinesin-like protein KI 60.4 6 0.0002 39.8 3.8 24 173-196 96-121 (359)
303 3d3q_A TRNA delta(2)-isopenten 60.2 4.5 0.00015 40.3 2.8 17 182-198 9-25 (340)
304 2ius_A DNA translocase FTSK; n 60.1 9.1 0.00031 40.4 5.3 21 179-199 166-186 (512)
305 1lv7_A FTSH; alpha/beta domain 60.1 4.5 0.00015 38.2 2.8 18 180-197 45-62 (257)
306 2ewv_A Twitching motility prot 60.1 3.9 0.00013 41.4 2.4 19 178-196 134-152 (372)
307 2whx_A Serine protease/ntpase/ 59.7 15 0.00052 39.8 7.2 68 219-304 355-423 (618)
308 4a2q_A RIG-I, retinoic acid in 59.6 14 0.00048 41.4 7.1 70 394-467 296-376 (797)
309 4b4t_H 26S protease regulatory 59.5 4.3 0.00015 42.2 2.6 54 141-197 204-260 (467)
310 1fuu_A Yeast initiation factor 59.4 18 0.00063 36.0 7.5 70 393-467 88-167 (394)
311 4b4t_K 26S protease regulatory 59.4 3.2 0.00011 42.8 1.7 54 141-197 167-223 (428)
312 3gk5_A Uncharacterized rhodane 59.3 5.8 0.0002 32.0 2.9 37 393-429 54-90 (108)
313 3eph_A TRNA isopentenyltransfe 59.1 4.8 0.00016 41.1 2.9 16 183-198 5-20 (409)
314 3tbk_A RIG-I helicase domain; 59.0 9.2 0.00032 40.3 5.3 70 394-467 52-132 (555)
315 3g5j_A Putative ATP/GTP bindin 58.8 9.9 0.00034 31.5 4.5 35 395-429 90-125 (134)
316 2zr9_A Protein RECA, recombina 58.8 9.3 0.00032 38.2 5.0 39 179-228 60-98 (349)
317 4eun_A Thermoresistant glucoki 58.6 5.6 0.00019 36.0 3.0 19 179-197 28-46 (200)
318 4gp7_A Metallophosphoesterase; 58.2 3.8 0.00013 36.2 1.8 20 179-198 8-27 (171)
319 1ly1_A Polynucleotide kinase; 58.2 4.3 0.00015 35.7 2.1 16 182-197 4-19 (181)
320 1u94_A RECA protein, recombina 58.0 9.5 0.00032 38.3 4.9 39 179-228 62-100 (356)
321 1u6p_A GAG polyprotein; MLV, A 57.9 3.7 0.00013 29.0 1.3 22 544-565 23-44 (56)
322 3kb2_A SPBC2 prophage-derived 57.6 5.6 0.00019 34.6 2.8 17 182-198 3-19 (173)
323 1bg2_A Kinesin; motor protein, 57.5 7 0.00024 38.7 3.7 24 173-196 69-94 (325)
324 3eme_A Rhodanese-like domain p 57.5 5.7 0.0002 31.6 2.6 37 393-429 55-91 (103)
325 1znw_A Guanylate kinase, GMP k 57.4 6 0.00021 36.0 3.1 22 176-197 16-37 (207)
326 3fmp_B ATP-dependent RNA helic 57.3 2.2 7.5E-05 44.7 0.0 70 219-304 333-406 (479)
327 2r8r_A Sensor protein; KDPD, P 57.2 10 0.00034 35.4 4.5 22 182-203 8-29 (228)
328 1rj9_A FTSY, signal recognitio 56.9 11 0.00036 36.9 4.9 18 180-197 102-119 (304)
329 4a2p_A RIG-I, retinoic acid in 56.9 13 0.00044 39.3 6.0 70 394-467 55-135 (556)
330 3eie_A Vacuolar protein sortin 56.8 5.5 0.00019 39.2 2.9 51 141-197 13-68 (322)
331 1xwi_A SKD1 protein; VPS4B, AA 56.7 5.4 0.00018 39.4 2.8 51 141-197 7-62 (322)
332 3cm0_A Adenylate kinase; ATP-b 56.7 4.5 0.00015 35.9 2.0 20 179-198 3-22 (186)
333 3iwh_A Rhodanese-like domain p 56.3 6.2 0.00021 31.7 2.6 36 393-428 55-90 (103)
334 1knq_A Gluconate kinase; ALFA/ 56.3 5.4 0.00018 35.0 2.5 19 179-197 7-25 (175)
335 3t15_A Ribulose bisphosphate c 56.2 5.7 0.0002 38.6 2.8 17 181-197 37-53 (293)
336 1tue_A Replication protein E1; 56.2 13 0.00046 34.0 5.0 45 151-197 27-75 (212)
337 3fmo_B ATP-dependent RNA helic 56.2 9.2 0.00032 37.2 4.3 68 394-468 162-241 (300)
338 1s96_A Guanylate kinase, GMP k 56.0 6.5 0.00022 36.4 3.0 21 177-197 13-33 (219)
339 1xjc_A MOBB protein homolog; s 55.9 13 0.00044 32.9 4.8 14 183-196 7-20 (169)
340 1f2t_A RAD50 ABC-ATPase; DNA d 55.8 7.8 0.00027 33.4 3.3 14 183-196 26-39 (149)
341 3foj_A Uncharacterized protein 55.8 5.9 0.0002 31.3 2.4 37 393-429 55-91 (100)
342 2qp9_X Vacuolar protein sortin 55.8 6.5 0.00022 39.4 3.2 19 180-198 84-102 (355)
343 2y65_A Kinesin, kinesin heavy 55.6 7.8 0.00027 39.0 3.7 24 173-196 76-101 (365)
344 3b6u_A Kinesin-like protein KI 55.4 8.1 0.00028 39.0 3.8 24 173-196 93-118 (372)
345 1a6b_B Momulv, zinc finger pro 55.4 5.1 0.00018 26.1 1.5 22 544-565 10-31 (40)
346 4etp_A Kinesin-like protein KA 55.4 8.5 0.00029 39.3 4.0 25 173-197 132-158 (403)
347 2nr8_A Kinesin-like protein KI 55.2 8.2 0.00028 38.7 3.8 24 173-196 95-120 (358)
348 3uie_A Adenylyl-sulfate kinase 55.1 5.9 0.0002 35.8 2.5 19 179-197 24-42 (200)
349 2c9o_A RUVB-like 1; hexameric 54.8 6.1 0.00021 41.1 2.9 20 179-198 62-81 (456)
350 1ixz_A ATP-dependent metallopr 54.8 6.2 0.00021 37.2 2.7 54 141-197 11-66 (254)
351 3dc4_A Kinesin-like protein NO 54.7 7.3 0.00025 38.9 3.3 24 173-196 86-111 (344)
352 4a14_A Kinesin, kinesin-like p 54.7 8.1 0.00028 38.6 3.7 24 173-196 75-100 (344)
353 2vvg_A Kinesin-2; motor protei 54.6 8.3 0.00028 38.5 3.7 24 173-196 81-106 (350)
354 3gbj_A KIF13B protein; kinesin 54.6 8.5 0.00029 38.6 3.8 24 173-196 84-109 (354)
355 4f4c_A Multidrug resistance pr 54.5 10 0.00034 45.3 5.0 35 297-331 1233-1267(1321)
356 1v8k_A Kinesin-like protein KI 54.4 8.7 0.0003 39.2 3.9 24 173-196 146-171 (410)
357 1xp8_A RECA protein, recombina 54.3 12 0.00042 37.6 5.0 40 179-229 73-112 (366)
358 1g41_A Heat shock protein HSLU 54.2 16 0.00055 37.7 5.9 18 180-197 50-67 (444)
359 3vkg_A Dynein heavy chain, cyt 54.2 14 0.00047 47.8 6.3 48 150-198 873-924 (3245)
360 1t5c_A CENP-E protein, centrom 54.1 8.8 0.0003 38.4 3.8 25 173-197 69-95 (349)
361 1goj_A Kinesin, kinesin heavy 54.1 8.3 0.00028 38.7 3.6 23 174-196 73-97 (355)
362 2h58_A Kinesin-like protein KI 54.0 8.6 0.00029 38.1 3.7 25 172-196 71-97 (330)
363 3lre_A Kinesin-like protein KI 53.7 8.4 0.00029 38.6 3.6 24 173-196 97-122 (355)
364 1x88_A Kinesin-like protein KI 53.6 8.2 0.00028 38.8 3.5 24 173-196 80-105 (359)
365 2bdt_A BH3686; alpha-beta prot 53.4 7.2 0.00025 34.7 2.8 17 181-197 3-19 (189)
366 3kta_A Chromosome segregation 53.3 8 0.00027 34.1 3.1 16 182-197 28-43 (182)
367 1q0u_A Bstdead; DEAD protein, 53.2 11 0.00038 34.4 4.2 70 394-467 72-155 (219)
368 2rhm_A Putative kinase; P-loop 53.2 5.4 0.00019 35.5 2.0 18 180-197 5-22 (193)
369 1njg_A DNA polymerase III subu 53.1 13 0.00045 33.8 4.8 16 182-197 47-62 (250)
370 3t0q_A AGR253WP; kinesin, alph 53.1 8.4 0.00029 38.5 3.5 25 173-197 77-103 (349)
371 2c95_A Adenylate kinase 1; tra 53.1 8.4 0.00029 34.3 3.2 19 179-197 8-26 (196)
372 1w36_B RECB, exodeoxyribonucle 53.0 16 0.00056 42.9 6.5 66 179-245 16-82 (1180)
373 2zfi_A Kinesin-like protein KI 52.9 9.1 0.00031 38.5 3.7 24 173-196 81-106 (366)
374 3cob_A Kinesin heavy chain-lik 52.9 7.8 0.00027 39.1 3.2 24 173-196 71-96 (369)
375 3d8b_A Fidgetin-like protein 1 52.8 6.9 0.00024 39.2 2.9 20 179-198 116-135 (357)
376 1via_A Shikimate kinase; struc 52.6 8.3 0.00028 33.8 3.1 18 182-199 6-23 (175)
377 4fcw_A Chaperone protein CLPB; 52.6 8.2 0.00028 37.4 3.3 18 181-198 48-65 (311)
378 1tev_A UMP-CMP kinase; ploop, 52.5 5.3 0.00018 35.6 1.7 19 180-198 3-21 (196)
379 1ak2_A Adenylate kinase isoenz 52.4 7.5 0.00026 36.1 2.9 20 179-198 15-34 (233)
380 3u06_A Protein claret segregat 52.2 8.4 0.00029 39.5 3.3 25 172-196 129-155 (412)
381 3u4q_B ATP-dependent helicase/ 52.1 12 0.0004 44.1 5.0 31 396-426 344-375 (1166)
382 3t61_A Gluconokinase; PSI-biol 51.9 7.7 0.00026 35.0 2.8 17 181-197 19-35 (202)
383 1f9v_A Kinesin-like protein KA 51.5 8.7 0.0003 38.4 3.3 25 173-197 76-102 (347)
384 3lnc_A Guanylate kinase, GMP k 51.4 6.1 0.00021 36.6 2.1 19 179-197 26-44 (231)
385 3vfd_A Spastin; ATPase, microt 51.4 7.4 0.00025 39.5 2.8 19 179-197 147-165 (389)
386 1zuh_A Shikimate kinase; alpha 51.3 8.1 0.00028 33.6 2.8 19 181-199 8-26 (168)
387 2wbe_C Bipolar kinesin KRP-130 51.2 8.9 0.00031 38.7 3.3 24 173-196 92-117 (373)
388 1ye8_A Protein THEP1, hypothet 51.2 8.2 0.00028 34.4 2.8 16 182-197 2-17 (178)
389 2r62_A Cell division protease 51.0 4.4 0.00015 38.6 1.0 19 180-198 44-62 (268)
390 3qf7_A RAD50; ABC-ATPase, ATPa 51.0 9 0.00031 38.6 3.3 18 182-199 25-42 (365)
391 1qxn_A SUD, sulfide dehydrogen 50.9 14 0.00049 31.1 4.2 37 393-429 81-118 (137)
392 1in4_A RUVB, holliday junction 50.9 8.3 0.00028 38.2 3.1 17 181-197 52-68 (334)
393 2f1r_A Molybdopterin-guanine d 50.8 6.6 0.00023 34.8 2.1 16 182-197 4-19 (171)
394 3flh_A Uncharacterized protein 50.7 8.5 0.00029 31.8 2.6 36 394-429 71-108 (124)
395 2fsx_A RV0390, COG0607: rhodan 50.7 17 0.00059 31.0 4.7 37 393-429 79-116 (148)
396 3b9q_A Chloroplast SRP recepto 50.7 13 0.00045 36.2 4.4 19 179-197 99-117 (302)
397 1m7g_A Adenylylsulfate kinase; 50.5 7.7 0.00026 35.4 2.6 30 167-197 13-42 (211)
398 1g8p_A Magnesium-chelatase 38 50.5 11 0.00037 37.2 3.8 19 179-197 44-62 (350)
399 2va8_A SSO2462, SKI2-type heli 50.3 40 0.0014 37.0 8.8 83 218-306 251-363 (715)
400 2heh_A KIF2C protein; kinesin, 50.1 9.7 0.00033 38.6 3.4 25 173-197 126-152 (387)
401 4gl2_A Interferon-induced heli 49.8 7.6 0.00026 42.7 2.8 77 219-305 400-488 (699)
402 2jtq_A Phage shock protein E; 49.7 24 0.00083 26.5 5.0 37 392-429 39-76 (85)
403 3f9v_A Minichromosome maintena 49.7 7.9 0.00027 41.9 2.8 15 182-196 329-343 (595)
404 2iut_A DNA translocase FTSK; n 49.7 17 0.00058 38.8 5.3 25 180-204 214-238 (574)
405 2iyv_A Shikimate kinase, SK; t 49.6 10 0.00036 33.4 3.3 18 181-198 3-20 (184)
406 1c9k_A COBU, adenosylcobinamid 49.5 10 0.00035 33.9 3.1 43 183-240 2-44 (180)
407 1zak_A Adenylate kinase; ATP:A 49.5 11 0.00036 34.7 3.4 20 180-199 5-24 (222)
408 3bfn_A Kinesin-like protein KI 49.5 8.4 0.00029 39.1 2.8 22 175-196 92-115 (388)
409 1gvn_B Zeta; postsegregational 49.5 6.2 0.00021 38.3 1.8 17 181-197 34-50 (287)
410 1cke_A CK, MSSA, protein (cyti 49.3 8.9 0.0003 35.2 2.8 18 181-198 6-23 (227)
411 1tq1_A AT5G66040, senescence-a 49.0 13 0.00046 30.8 3.7 37 393-429 81-118 (129)
412 2r2a_A Uncharacterized protein 48.9 11 0.00036 34.4 3.2 17 183-199 8-24 (199)
413 2v54_A DTMP kinase, thymidylat 48.7 10 0.00034 34.1 3.1 19 179-197 3-21 (204)
414 3c8u_A Fructokinase; YP_612366 48.7 7.6 0.00026 35.4 2.2 18 179-196 21-38 (208)
415 1iy2_A ATP-dependent metallopr 48.7 9 0.00031 36.7 2.8 54 141-197 35-90 (278)
416 2z0m_A 337AA long hypothetical 48.6 28 0.00097 33.6 6.6 69 394-467 56-134 (337)
417 2bwj_A Adenylate kinase 5; pho 48.2 11 0.00038 33.5 3.3 19 179-197 11-29 (199)
418 4a74_A DNA repair and recombin 48.1 8.9 0.0003 35.1 2.6 20 179-198 24-43 (231)
419 2i3b_A HCR-ntpase, human cance 48.1 11 0.00038 33.9 3.2 42 297-341 103-146 (189)
420 1aky_A Adenylate kinase; ATP:A 48.0 10 0.00035 34.7 3.1 19 180-198 4-22 (220)
421 3asz_A Uridine kinase; cytidin 48.0 9.2 0.00031 34.7 2.6 18 180-197 6-23 (211)
422 1nks_A Adenylate kinase; therm 47.9 10 0.00035 33.5 2.9 16 182-197 3-18 (194)
423 1zd8_A GTP:AMP phosphotransfer 47.7 10 0.00036 34.9 3.0 18 180-197 7-24 (227)
424 2rep_A Kinesin-like protein KI 47.6 10 0.00034 38.3 3.0 24 173-196 107-132 (376)
425 2v9p_A Replication protein E1; 47.4 10 0.00034 37.2 2.9 19 179-197 125-143 (305)
426 3tif_A Uncharacterized ABC tra 47.3 8.5 0.00029 36.0 2.3 18 179-196 30-47 (235)
427 2owm_A Nckin3-434, related to 47.2 12 0.00042 38.6 3.7 24 173-196 128-153 (443)
428 3k1j_A LON protease, ATP-depen 47.2 15 0.00051 39.7 4.6 23 175-197 55-77 (604)
429 1qf9_A UMP/CMP kinase, protein 47.1 11 0.00037 33.4 2.9 16 182-197 8-23 (194)
430 3fb4_A Adenylate kinase; psych 47.1 10 0.00035 34.5 2.8 17 182-198 2-18 (216)
431 3ice_A Transcription terminati 47.0 42 0.0015 34.0 7.4 91 106-199 73-193 (422)
432 2zan_A Vacuolar protein sortin 46.9 9.7 0.00033 39.5 2.9 53 141-197 129-184 (444)
433 3nhv_A BH2092 protein; alpha-b 46.9 12 0.00042 31.8 3.1 36 394-429 72-109 (144)
434 2yvu_A Probable adenylyl-sulfa 46.9 9.6 0.00033 33.8 2.5 20 179-198 12-31 (186)
435 2pez_A Bifunctional 3'-phospho 46.9 9.6 0.00033 33.5 2.5 19 179-197 4-22 (179)
436 1gmx_A GLPE protein; transfera 46.8 13 0.00044 29.7 3.1 37 393-429 57-94 (108)
437 3hix_A ALR3790 protein; rhodan 46.7 10 0.00036 30.3 2.5 37 393-429 51-88 (106)
438 3auy_A DNA double-strand break 46.5 12 0.00043 37.5 3.6 16 182-197 27-42 (371)
439 3h1t_A Type I site-specific re 46.5 36 0.0012 36.4 7.5 84 218-309 438-527 (590)
440 1e6c_A Shikimate kinase; phosp 46.4 12 0.0004 32.5 3.0 18 181-198 3-20 (173)
441 4e22_A Cytidylate kinase; P-lo 46.2 11 0.00038 35.5 3.0 19 179-197 26-44 (252)
442 2plr_A DTMP kinase, probable t 46.2 9.2 0.00032 34.5 2.4 19 179-197 3-21 (213)
443 1zu4_A FTSY; GTPase, signal re 46.2 17 0.00057 35.8 4.4 20 179-198 104-123 (320)
444 3dmq_A RNA polymerase-associat 46.1 35 0.0012 39.2 7.7 77 218-309 502-584 (968)
445 3pxg_A Negative regulator of g 46.0 13 0.00045 38.7 3.8 20 179-198 200-219 (468)
446 2k0z_A Uncharacterized protein 46.0 19 0.00065 28.9 4.0 38 392-429 54-91 (110)
447 1np6_A Molybdopterin-guanine d 45.9 22 0.00077 31.4 4.8 15 182-196 8-22 (174)
448 2if2_A Dephospho-COA kinase; a 45.9 11 0.00039 33.8 2.9 16 182-197 3-18 (204)
449 3dl0_A Adenylate kinase; phosp 45.7 11 0.00038 34.3 2.8 17 182-198 2-18 (216)
450 2qt1_A Nicotinamide riboside k 45.4 11 0.00036 34.2 2.6 19 179-197 20-38 (207)
451 3qks_A DNA double-strand break 45.3 13 0.00046 33.7 3.3 24 182-207 25-48 (203)
452 1jjv_A Dephospho-COA kinase; P 44.9 12 0.00039 33.9 2.8 15 183-197 5-19 (206)
453 1q57_A DNA primase/helicase; d 44.9 13 0.00043 39.2 3.5 50 179-239 241-290 (503)
454 1ukz_A Uridylate kinase; trans 44.7 9.4 0.00032 34.4 2.1 16 182-197 17-32 (203)
455 2v3c_C SRP54, signal recogniti 44.7 17 0.00058 37.5 4.3 21 181-201 100-120 (432)
456 2og2_A Putative signal recogni 44.7 18 0.00062 36.2 4.4 19 179-197 156-174 (359)
457 2cdn_A Adenylate kinase; phosp 44.4 9.6 0.00033 34.3 2.2 18 180-197 20-37 (201)
458 3mwy_W Chromo domain-containin 44.4 87 0.003 34.9 10.5 76 218-309 571-653 (800)
459 1ry6_A Internal kinesin; kines 44.4 14 0.00047 37.1 3.4 18 179-196 82-101 (360)
460 2ykg_A Probable ATP-dependent 44.3 22 0.00074 38.9 5.4 69 395-467 62-141 (696)
461 2jaq_A Deoxyguanosine kinase; 44.2 12 0.00041 33.4 2.8 16 182-197 2-17 (205)
462 1tf5_A Preprotein translocase 44.2 27 0.00093 39.0 6.0 69 393-467 123-208 (844)
463 1uf9_A TT1252 protein; P-loop, 44.1 12 0.00043 33.3 2.9 16 182-197 10-25 (203)
464 2vli_A Antibiotic resistance p 44.0 8.6 0.00029 33.8 1.7 20 179-198 4-23 (183)
465 2pt5_A Shikimate kinase, SK; a 43.8 9.8 0.00034 32.9 2.1 16 182-197 2-17 (168)
466 2wwf_A Thymidilate kinase, put 43.5 14 0.00047 33.4 3.1 20 179-198 9-28 (212)
467 2fsf_A Preprotein translocase 43.3 25 0.00085 39.3 5.5 69 393-467 114-199 (853)
468 3be4_A Adenylate kinase; malar 43.0 14 0.00048 33.8 3.1 18 180-197 5-22 (217)
469 2cbz_A Multidrug resistance-as 42.9 11 0.00037 35.3 2.3 18 179-196 30-47 (237)
470 1sgw_A Putative ABC transporte 42.8 12 0.00042 34.4 2.6 18 179-196 34-51 (214)
471 2fz4_A DNA repair protein RAD2 42.7 33 0.0011 31.8 5.7 46 394-452 133-179 (237)
472 2bbw_A Adenylate kinase 4, AK4 42.7 13 0.00044 34.8 2.8 18 180-197 27-44 (246)
473 1nn5_A Similar to deoxythymidy 42.6 15 0.0005 33.2 3.2 20 179-198 8-27 (215)
474 1nij_A Hypothetical protein YJ 42.5 18 0.00061 35.5 4.0 14 183-196 7-20 (318)
475 3cmw_A Protein RECA, recombina 42.2 27 0.00091 42.4 6.0 40 179-229 33-72 (1706)
476 2pbr_A DTMP kinase, thymidylat 42.1 11 0.00037 33.4 2.1 15 183-197 3-17 (195)
477 3nh6_A ATP-binding cassette SU 42.0 12 0.0004 36.7 2.4 18 179-196 79-96 (306)
478 3b6e_A Interferon-induced heli 41.9 11 0.00038 33.9 2.2 55 394-452 82-140 (216)
479 3a4m_A L-seryl-tRNA(SEC) kinas 41.8 11 0.00037 35.8 2.1 18 181-198 5-22 (260)
480 3sr0_A Adenylate kinase; phosp 41.8 14 0.00048 33.7 2.8 18 182-199 2-19 (206)
481 3fho_A ATP-dependent RNA helic 41.7 3.8 0.00013 43.4 -1.3 72 219-306 357-432 (508)
482 1e4v_A Adenylate kinase; trans 41.6 14 0.00049 33.5 2.9 16 182-197 2-17 (214)
483 2p5t_B PEZT; postsegregational 41.0 7.6 0.00026 36.7 0.9 18 180-197 32-49 (253)
484 4a2w_A RIG-I, retinoic acid in 40.9 20 0.0007 40.9 4.6 70 394-467 296-376 (936)
485 3h75_A Periplasmic sugar-bindi 40.9 2.5E+02 0.0086 26.9 14.5 38 383-420 193-230 (350)
486 2pcj_A ABC transporter, lipopr 40.9 13 0.00043 34.5 2.4 18 179-196 29-46 (224)
487 2p6r_A Afuhel308 helicase; pro 40.8 78 0.0027 34.6 9.2 82 218-305 241-346 (702)
488 2zj8_A DNA helicase, putative 40.7 58 0.002 35.8 8.2 84 218-308 236-346 (720)
489 2pze_A Cystic fibrosis transme 40.6 12 0.00043 34.7 2.3 18 179-196 33-50 (229)
490 3gfo_A Cobalt import ATP-bindi 40.4 12 0.00042 35.9 2.3 18 179-196 33-50 (275)
491 2ce7_A Cell division protein F 40.3 14 0.00046 38.7 2.7 17 181-197 50-66 (476)
492 1r6b_X CLPA protein; AAA+, N-t 40.2 21 0.00073 39.6 4.5 79 116-201 420-509 (758)
493 2z0h_A DTMP kinase, thymidylat 40.0 12 0.00042 33.2 2.1 16 183-198 3-18 (197)
494 1rz3_A Hypothetical protein rb 39.9 16 0.00055 32.9 2.9 17 181-197 23-39 (201)
495 4g1u_C Hemin import ATP-bindin 39.8 13 0.00044 35.6 2.3 18 179-196 36-53 (266)
496 3nzo_A UDP-N-acetylglucosamine 39.5 2.3E+02 0.008 28.2 12.1 90 171-282 26-119 (399)
497 2hhg_A Hypothetical protein RP 39.3 14 0.00049 30.9 2.3 37 393-429 85-122 (139)
498 4akg_A Glutathione S-transfera 39.2 12 0.0004 47.7 2.4 20 178-197 1265-1284(2695)
499 1g6h_A High-affinity branched- 39.2 13 0.00046 35.2 2.3 18 179-196 32-49 (257)
500 3umf_A Adenylate kinase; rossm 39.1 16 0.00055 33.7 2.8 21 179-199 28-48 (217)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-69 Score=577.36 Aligned_cols=391 Identities=39% Similarity=0.652 Sum_probs=363.6
Q ss_pred cCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhh
Q 007829 129 WHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHE 208 (588)
Q Consensus 129 ~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~ 208 (588)
..+.+.|.++|.|+.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..++..
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHH
Q 007829 209 EMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKD 288 (588)
Q Consensus 209 ~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~ 288 (588)
.. .....++++|||+||++||.|+++.+.+++... ++++.+++||.....+...+..+++|+|+||++|.+
T Consensus 122 ~~---~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~------~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 192 (434)
T 2db3_A 122 PH---ELELGRPQVVIVSPTRELAIQIFNEARKFAFES------YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLD 192 (434)
T ss_dssp CC---CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS------SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred cc---ccccCCccEEEEecCHHHHHHHHHHHHHHhccC------CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHH
Confidence 21 112357899999999999999999999997644 788899999999998888888999999999999999
Q ss_pred HHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh--hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCc
Q 007829 289 MLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAA 366 (588)
Q Consensus 289 ~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~--~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~ 366 (588)
++.+....+.++++||+||||+|+++||...+..++..+ +..+|+++||||+|+.+..++..++.++..+.++..+..
T Consensus 193 ~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 272 (434)
T 2db3_A 193 FVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGA 272 (434)
T ss_dssp HHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCC
T ss_pred HHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccc
Confidence 999888889999999999999999999999999999885 578899999999999999999999999999999888878
Q ss_pred ccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007829 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 367 ~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~ 446 (588)
..++.+.+..+....+...+++.+.....++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 273 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 352 (434)
T 2db3_A 273 CSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 352 (434)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS
T ss_pred ccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 88888888888888888889998888777899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHh
Q 007829 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526 (588)
Q Consensus 447 VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 526 (588)
|||||+++++|+|+|++++||+||+|.+++.|+||+|||||.|+.|.+++|+++..+...+.++.+++..+++.+|++|.
T Consensus 353 vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 432 (434)
T 2db3_A 353 VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR 432 (434)
T ss_dssp EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC
T ss_pred EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999777888999999999999999999987
Q ss_pred hc
Q 007829 527 EL 528 (588)
Q Consensus 527 ~l 528 (588)
++
T Consensus 433 ~~ 434 (434)
T 2db3_A 433 TC 434 (434)
T ss_dssp --
T ss_pred hC
Confidence 54
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.9e-62 Score=518.60 Aligned_cols=394 Identities=39% Similarity=0.688 Sum_probs=351.4
Q ss_pred eEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcc
Q 007829 131 IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEM 210 (588)
Q Consensus 131 i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~ 210 (588)
+.+.|.++|+++.+|+++++++.+.++|...||..|||+|.++|+.++.|+|++++||||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999988775421
Q ss_pred c----------CCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEE
Q 007829 211 M----------MPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVV 280 (588)
Q Consensus 211 ~----------~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV 280 (588)
. .......++++|||+||++|+.|+++.+.+++... ++++..++||.....+...+..+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~I~v 156 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS------RVRPCVVYGGADIGQQIRDLERGCHLLV 156 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS------SCCEEEECSSSCHHHHHHHHTTCCSEEE
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC------CceEEEEECCCCHHHHHHHhhCCCCEEE
Confidence 0 00011235789999999999999999999987644 7889999999999888888888999999
Q ss_pred eChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh--h--hcceEEEEeeccchHHHHHHHHhccCCe
Q 007829 281 ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--K--AQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 281 ~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~--~--~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
+||++|.+++....+.+..+++||+||||++.+++|...+..++... + ..+|++++|||+++.+..++..++.++.
T Consensus 157 ~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 236 (417)
T 2i4i_A 157 ATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 236 (417)
T ss_dssp ECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred EChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE
Confidence 99999999999888889999999999999999999999999998853 2 2578999999999999999999999998
Q ss_pred EEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Q 007829 357 TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEERE 434 (588)
Q Consensus 357 ~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~ 434 (588)
.+.+.........+.+.+.+.....+...+.+.+... +.++||||+++..++.+++.|...|+.+..+||++++.+|.
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 237 FLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp EEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred EEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 8888777667777888888887777888888877764 56899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 435 ~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
.+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+
T Consensus 317 ~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~~ 395 (417)
T 2i4i_A 317 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLL 395 (417)
T ss_dssp HHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGG-GGGGHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccc-cHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 677889999999
Q ss_pred HHhcCcCchHHhhccCc
Q 007829 515 QEAKQRIPPVLAELNDP 531 (588)
Q Consensus 515 ~~~~~~vp~~l~~l~~~ 531 (588)
....+.+|.++..+...
T Consensus 396 ~~~~~~~~~~l~~~~~~ 412 (417)
T 2i4i_A 396 VEAKQEVPSWLENMAYE 412 (417)
T ss_dssp HHTTCCCCHHHHHHHTC
T ss_pred HHhcCcCCHHHHHHHHh
Confidence 99999999999888765
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-59 Score=496.71 Aligned_cols=370 Identities=30% Similarity=0.522 Sum_probs=326.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007829 138 IPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 138 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
.+.+..+|+++++++.+++.|...||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.. ..
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~--------~~ 103 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--------QV 103 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT--------TS
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh--------cc
Confidence 3456778999999999999999999999999999999999999999999999999999999999976532 13
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
.++++||++||++|+.|+++.+.+++... ++.+..++||.....+...+..+++|+|+||++|.+++....+.+
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~ 177 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYM------NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 177 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTT------TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccC------CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccH
Confidence 56789999999999999999999997654 788999999999988888888899999999999999999888889
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeeh
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~ 377 (588)
..+++||+||||++.+++|...+..++..++...|++++|||+++.+.+++..++.+|..+.+.........+.+.+...
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV 257 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEE
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998887766655556666666655
Q ss_pred hhH-HHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007829 378 KQE-AKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~-~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 455 (588)
... .+...+...+.. ...++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 258 ~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 258 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp SSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred CcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 433 355556665544 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCc
Q 007829 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp 522 (588)
+|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+.++.+++......+|
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND-DIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGG-GHHHHHHHHHHTTCCCEECC
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHH-HHHHHHHHHHHhCCCceecc
Confidence 9999999999999999999999999999999999999999999987 55566666665554444444
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-57 Score=483.51 Aligned_cols=376 Identities=30% Similarity=0.544 Sum_probs=316.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007829 137 DIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 137 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
..+....+|+++++++.+.+.|.+.||..|+++|.++|+.++.|+|+++++|||||||++|++|++..+...
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------- 105 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-------- 105 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--------
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--------
Confidence 345567899999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccC
Q 007829 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~ 295 (588)
..++++||++||++|+.|+++.+.+++... ++.+..++|+.....+...+. .+++|+|+||++|.+++....+
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~ 179 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYM------GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYL 179 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGS------CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSS
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhccc------CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCc
Confidence 256789999999999999999999997654 788889999988887777766 6789999999999999998888
Q ss_pred CCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEee
Q 007829 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~ 375 (588)
.+..+++||+||||++.+++|...+..++..++...|+++||||++..+..+...++.++..+...........+.+.+.
T Consensus 180 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (414)
T 3eiq_A 180 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 259 (414)
T ss_dssp CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEE
T ss_pred ccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999988877666555555555554
Q ss_pred ehhh-HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007829 376 YVKQ-EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 376 ~~~~-~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~ 453 (588)
.... ..+...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 339 (414)
T 3eiq_A 260 NVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339 (414)
T ss_dssp ECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS
T ss_pred EeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 4443 3366666666655 3569999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHHhh
Q 007829 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 527 (588)
+++|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++. +...+..+..++......+|..+.+
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTCCCEECCC----
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcCCccccChhhhh
Confidence 999999999999999999999999999999999999999999999988 6667777777777766777766554
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.9e-56 Score=472.99 Aligned_cols=368 Identities=30% Similarity=0.534 Sum_probs=317.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007829 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
.+..+|+++++++.+.+.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++..+... ..+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--------~~~ 89 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--------LNK 89 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------SCS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--------cCC
Confidence 355689999999999999999999999999999999999999999999999999999999999775331 246
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007829 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~ 299 (588)
+++||++||++|+.|+++.+.+++... ++++..+.|+.....+...+..+++|+|+||++|.+++......+.+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 90 IQALIMVPTRELALQTSQVVRTLGKHC------GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTT------TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred ccEEEEcCCHHHHHHHHHHHHHHhccc------CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 789999999999999999999997654 78899999998888777777788999999999999999888788999
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
+++||+||||++.+.+|...+..++..++...|++++|||+|..+..++...+..|..+..... .....+.+.+.....
T Consensus 164 ~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 164 CSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEE 242 (400)
T ss_dssp CCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCG
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEech
Confidence 9999999999999888888899999888888999999999999999999999988877654432 333455666666666
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007829 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 458 (588)
..+...+...+.. ..+++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 243 ~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (400)
T 1s2m_A 243 RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGI 322 (400)
T ss_dssp GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSC
T ss_pred hhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Confidence 6666666666654 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCch
Q 007829 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPP 523 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~ 523 (588)
|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+....+.+|.
T Consensus 323 dip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 323 DIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCS
T ss_pred CccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999999999999887 444444444443333333443
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.8e-56 Score=468.24 Aligned_cols=368 Identities=29% Similarity=0.492 Sum_probs=318.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.+.++|.+.||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+... ..++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~ 79 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSV 79 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------TTCCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--------CCCeeE
Confidence 479999999999999999999999999999999999999999999999999999999998765321 246789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
||++||++|+.|+.+.+.++.... +++++..++|+.........+..+ ++|+|+||++|..++......+.+++
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 154 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYM-----PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTC-----TTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCS
T ss_pred EEECCCHHHHHHHHHHHHHHHhhC-----CCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccC
Confidence 999999999999999999997543 478899999998887776666554 79999999999999988888899999
Q ss_pred eeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCC-cccceEEEeeehhh
Q 007829 302 YLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA-ANLDVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~-~~~~v~~~~~~~~~ 379 (588)
+||+||||++.++ ++...+..++...+...|++++|||+++.+..++..++..|..+....... ....+.+.+.....
T Consensus 155 ~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (391)
T 1xti_A 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 234 (391)
T ss_dssp EEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG
T ss_pred EEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc
Confidence 9999999999884 677888888888888999999999999999999999999998877655432 23345555555566
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007829 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 458 (588)
..+...+...+.. ..+++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 235 ~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 314 (391)
T 1xti_A 235 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 314 (391)
T ss_dssp GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCB
T ss_pred hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCC
Confidence 6666666666654 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCch
Q 007829 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPP 523 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~ 523 (588)
|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++.++...+..+.+.+....+.+|.
T Consensus 315 di~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 315 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 99999999999999999999999999999999999999998875555566665554444444444
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.9e-55 Score=454.80 Aligned_cols=352 Identities=34% Similarity=0.570 Sum_probs=313.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
...+|+++++++.+.+.|.+.||..|+|+|.++++.++++ +++++.+|||||||++|++|++..+.. ..+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---------~~~ 74 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---------NNG 74 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---------SSS
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---------cCC
Confidence 3458999999999999999999999999999999999988 799999999999999999999876532 257
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007829 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~ 299 (588)
+++||++|+++|+.|+++.+.+++... ++++..++|+.....+...+. +++|+|+||++|.+.+......+.+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNK------NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSS------CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCC------CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCccccc
Confidence 789999999999999999999997543 788899999988877766665 5899999999999999888888999
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
+++||+||||++.+++|...+..++..++...+++++|||+++.+..+...++.++..+..... ..+.+.+.....
T Consensus 148 ~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 223 (367)
T 1hv8_A 148 VKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE 223 (367)
T ss_dssp CCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh
Confidence 9999999999999999999999999999889999999999999999999988887766554322 345556666667
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007829 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlD 459 (588)
..++..+...+...+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 224 ~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 303 (367)
T 1hv8_A 224 NERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGID 303 (367)
T ss_dssp GGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCC
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCC
Confidence 77888888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHH
Q 007829 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 460 ip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
+|++++||++++|+|+..|+||+||+||.|+.|.+++|+++. +...+..+.+.
T Consensus 304 ~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~ 356 (367)
T 1hv8_A 304 VNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR-EYKKLRYIERA 356 (367)
T ss_dssp CSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT-SHHHHHHHHHH
T ss_pred cccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHH-HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877 44444444433
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.7e-55 Score=463.78 Aligned_cols=362 Identities=30% Similarity=0.483 Sum_probs=311.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007829 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
+.++.+|+++++++.+++.|.+.||..|+|+|.++++.++++ ++++++||||||||++|++|++..+...
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------- 92 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 92 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--------
Confidence 345789999999999999999999999999999999999987 9999999999999999999999876432
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccC
Q 007829 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKM 295 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-~~~ 295 (588)
..++++||++||++|+.|+++.+.++.... +++.+....++....... ..+++|+|+||++|.+++.+ ..+
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~ 164 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFY-----PELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFI 164 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTS-----TTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhc-----ccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCc
Confidence 356789999999999999999999986542 467888888876543321 34579999999999999865 566
Q ss_pred CCCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEe
Q 007829 296 NLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV 374 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~ 374 (588)
.+.++++||+||||++.+ .++...+..++..++...|++++|||+++.+..++..++.++..+...........+.+.+
T Consensus 165 ~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEE
T ss_pred ChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEE
Confidence 788999999999999987 6788888999999999999999999999999999999999998888776666666666665
Q ss_pred eehh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 375 EYVK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 375 ~~~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
.... ...+...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 245 VLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred EEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 5554 34555666665544 457999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceEEecCCCC------ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHH
Q 007829 453 VASKGLDFPDIQHVINYDMPA------EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQE 516 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~------s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~ 516 (588)
++++|+|+|++++||+|++|+ +...|+||+||+||.|+.|.+++|++..++...+..+.+.+..
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 999999999999999999994 6789999999999999999999999876445555555555543
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.4e-55 Score=458.80 Aligned_cols=357 Identities=30% Similarity=0.499 Sum_probs=306.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007829 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
+...+|+++++++.+++.|.+.||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+... .
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------~ 73 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--------D 73 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------C
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--------C
Confidence 34679999999999999999999999999999999999988 9999999999999999999999775432 3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
.++++||++||++|+.|+++.+.+++... ++.+....++...... ..+++|+|+||++|.+++......+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~ 143 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFT------KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQL 143 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCC
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhccc------CeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCccc
Confidence 57789999999999999999999987543 6777777776443222 2368999999999999998888889
Q ss_pred CCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeee
Q 007829 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY 376 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~ 376 (588)
.++++||+||||++.+ +++...+..+...++...|++++|||+++.+..+...++..+..+...........+.+.+..
T Consensus 144 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (395)
T 3pey_A 144 QKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMD 223 (395)
T ss_dssp TTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEE
T ss_pred ccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEE
Confidence 9999999999999988 678888999999998999999999999999999999999988887766655555556665555
Q ss_pred hh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc
Q 007829 377 VK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA 454 (588)
Q Consensus 377 ~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 454 (588)
.. ...+...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 224 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp CSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred cCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 43 34455555555544 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceEEecCCCC------ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 455 SKGLDFPDIQHVINYDMPA------EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 455 ~~GlDip~v~~VI~~~~p~------s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+...++...+..+.+.+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999999998764444444444443
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.2e-54 Score=480.89 Aligned_cols=356 Identities=29% Similarity=0.461 Sum_probs=298.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+++.++++|...||..|+|+|.++|+.++ .|+|++++||||||||++|++|++..+..... ....++++|||+|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~----~~~~~~~~lvl~P 103 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----DSQYMVKAVIVAP 103 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----SSTTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc----cccCCCeEEEEcc
Confidence 99999999999999999999999999999 78999999999999999999999998876421 1234678999999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcc-cCCCCCcceeee
Q 007829 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTL 305 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~-~~~l~~~~~lIv 305 (588)
|++|+.|+++.+.+++... .+.+.+.+..+.||.....+...+. .+++|+|+||++|.+++.+. ...++.+++|||
T Consensus 104 tr~La~Q~~~~~~~~~~~~--~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 104 TRDLALQIEAEVKKIHDMN--YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp SHHHHHHHHHHHHHHHHHC--GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhhc--ccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 9999999999999986432 1234678889999988888877774 47999999999999988764 456788999999
Q ss_pred cCCcccccCCCHHHHHHHHHhhhh-------cceEEEEeeccchHHHHHHHHhccCCeEEEecCCC----CcccceEEEe
Q 007829 306 DEADRLVDLGFEDDIREVFDHFKA-------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG----AANLDVIQEV 374 (588)
Q Consensus 306 DEah~l~~~~~~~~i~~i~~~~~~-------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~----~~~~~v~~~~ 374 (588)
||||+|.+++|...+..++..++. .+|+++||||+++.+..++..++..+..+.+.... .....+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 999999999999999999888754 56999999999999999999999888766554322 2223344443
Q ss_pred eehhh-H----HHHHHHHHHhh--cCCCCEEEEeCccccHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007829 375 EYVKQ-E----AKIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLK---GVEAVAVHGGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 375 ~~~~~-~----~k~~~ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~r~~~~~~F~~g~ 444 (588)
..... . ..+..+...+. ..+.++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~ 341 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 341 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred EEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC
Confidence 33321 1 22333344443 34668999999999999999999887 999999999999999999999999999
Q ss_pred cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHH
Q 007829 445 KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 445 ~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
.+|||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.+++|+++. +...+..+..
T Consensus 342 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~ 408 (579)
T 3sqw_A 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELED 408 (579)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHH
T ss_pred CeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEccc-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 5555555443
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.9e-56 Score=471.58 Aligned_cols=372 Identities=28% Similarity=0.523 Sum_probs=189.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007829 138 IPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 138 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
...+..+|+++++++.+.+.|...||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--------~ 87 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------V 87 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------C
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--------C
Confidence 44567789999999999999999999999999999999999999999999999999999999999775432 3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
.++++||++||++|+.|+++.+.+++... ++++..++|+.........+. +++|+|+||++|.+.+......+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~ 160 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHM------DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRT 160 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccC------CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcch
Confidence 57799999999999999999999987654 788999999988776665555 57999999999999998888888
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeeh
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~ 377 (588)
.++++||+||||++.+++|...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.+...
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNV 240 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999998887765544444444444333
Q ss_pred hhHH-HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007829 378 KQEA-KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~~-k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 455 (588)
.... +...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 320 (394)
T 1fuu_A 241 EEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhh
Confidence 3322 33344444433 356899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHH
Q 007829 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l 525 (588)
+|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+++......+|..+
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchh-HHHHHHHHHHHhCCcccccCcch
Confidence 9999999999999999999999999999999999999999999887 55566666666665555555443
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.2e-54 Score=477.84 Aligned_cols=356 Identities=29% Similarity=0.460 Sum_probs=296.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+++.++++|...||..|+|+|.++|+.++ .++|++++||||||||++|++|++..+..... ....++++|||+|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~----~~~~~~~~lil~P 154 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----DSQYMVKAVIVAP 154 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----SSTTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----cccCCeeEEEEcC
Confidence 99999999999999999999999999999 67899999999999999999999998876431 1234678999999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcc-cCCCCCcceeee
Q 007829 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-KRGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTL 305 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~~~~IvV~Tp~~l~~~l~~~-~~~l~~~~~lIv 305 (588)
|++||.|+++.+.+++... .+.+.+.+..+.||.....+...+ ..+++|+|+||++|.+++.+. ...++.+++|||
T Consensus 155 tr~La~Q~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 155 TRDLALQIEAEVKKIHDMN--YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp SHHHHHHHHHHHHHHHHHC--GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cHHHHHHHHHHHHHHHhhc--cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 9999999999999986532 123467788899998888777766 457999999999999988764 345788999999
Q ss_pred cCCcccccCCCHHHHHHHHHhhhh-------cceEEEEeeccchHHHHHHHHhccCCeEEEecCCC----CcccceEEEe
Q 007829 306 DEADRLVDLGFEDDIREVFDHFKA-------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG----AANLDVIQEV 374 (588)
Q Consensus 306 DEah~l~~~~~~~~i~~i~~~~~~-------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~----~~~~~v~~~~ 374 (588)
||||+|.+++|...+..++..++. .+|+++||||+++.+..++..++..+..+.+.... .....+.+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 999999999999999999888754 56899999999999999999999888766553322 2223344443
Q ss_pred eehhh-HH----HHHHHHHHhh--cCCCCEEEEeCccccHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007829 375 EYVKQ-EA----KIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLK---GVEAVAVHGGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 375 ~~~~~-~~----k~~~ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~r~~~~~~F~~g~ 444 (588)
..... .. .+..+...+. ..+.++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 392 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 392 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred EECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 33321 12 2333333333 34669999999999999999999887 999999999999999999999999999
Q ss_pred cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHH
Q 007829 445 KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 445 ~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
.+|||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.+++|+.+. +...+..+.+
T Consensus 393 ~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~ 459 (563)
T 3i5x_A 393 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELED 459 (563)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHH
T ss_pred CCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchh-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 4444444443
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.9e-56 Score=484.62 Aligned_cols=372 Identities=30% Similarity=0.479 Sum_probs=182.7
Q ss_pred eEeecCCCCCC---CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHH
Q 007829 131 IIVDGEDIPPP---IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 131 i~v~g~~~p~p---~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~~ 205 (588)
+.+.+.+.|.| +.+|.++++++.+++.|.+.||..|+|+|.++|+.++.+ ++++++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34444444444 678999999999999999999999999999999999987 9999999999999999999998765
Q ss_pred HhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHH
Q 007829 206 MHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGR 285 (588)
Q Consensus 206 ~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~ 285 (588)
... ..++++|||+||++|+.|+++.+.++.... +++.+.+..++....... ..+++|+|+||++
T Consensus 157 ~~~--------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~ 220 (479)
T 3fmp_B 157 EPA--------NKYPQCLCLSPTYELALQTGKVIEQMGKFY-----PELKLAYAVRGNKLERGQ---KISEQIVIGTPGT 220 (479)
T ss_dssp CTT--------SCSCCEEEECSSHHHHHHHHHHHHHHHTTS-----TTCCEEEESTTCCCCTTC---CCCCSEEEECHHH
T ss_pred hhc--------CCCCcEEEEeChHHHHHHHHHHHHHHHhhC-----CCceEEEEeCCccccccc---cCCCCEEEECchH
Confidence 331 356689999999999999999999987542 467787777775543221 2357999999999
Q ss_pred HHHHHHc-ccCCCCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCC
Q 007829 286 LKDMLAK-KKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA 363 (588)
Q Consensus 286 l~~~l~~-~~~~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~ 363 (588)
|.+++.+ +.+.+.++++|||||||++.+ .+|...+..++..++..+|+++||||++..+..++..++.+|..+.+...
T Consensus 221 l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 300 (479)
T 3fmp_B 221 VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300 (479)
T ss_dssp HHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--
T ss_pred HHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc
Confidence 9999866 456788999999999999987 68888889999999999999999999999999999999999988887776
Q ss_pred CCcccceEEEeeehhh-HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 007829 364 GAANLDVIQEVEYVKQ-EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 364 ~~~~~~v~~~~~~~~~-~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~ 441 (588)
......+.+.+..... ..+...+...+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 301 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH
Confidence 6555556665555443 3444455555443 3568999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEcCccccCCCCCCcceEEecCCCC------ChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHH
Q 007829 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPA------EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 442 ~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~------s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
+|+.+|||||+++++|+|+|++++||+||+|. +...|+||+|||||.|+.|.+++|++...+...+..+.+.+.
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 99999999999999999999999999999995 678999999999999999999999998766666666666554
Q ss_pred Hhc
Q 007829 516 EAK 518 (588)
Q Consensus 516 ~~~ 518 (588)
...
T Consensus 461 ~~~ 463 (479)
T 3fmp_B 461 KKI 463 (479)
T ss_dssp ---
T ss_pred CCc
Confidence 433
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.6e-52 Score=427.30 Aligned_cols=333 Identities=32% Similarity=0.543 Sum_probs=285.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
+++.+.+.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.. ++++||++|++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 5789999999999999999999999999999999999999999999999998752 56799999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCc
Q 007829 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah 309 (588)
+|+.|+++.+.+++... ++++..++|+.....+...+.. ++|+|+||++|.+++......+.++++||+||||
T Consensus 67 ~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 139 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYM------DTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD 139 (337)
T ss_dssp HHHHHHHHHHHHHTTTS------CCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH
T ss_pred HHHHHHHHHHHHHhhhc------CCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH
Confidence 99999999999987644 7889999999888777666654 8999999999999988887788999999999999
Q ss_pred ccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHH
Q 007829 310 RLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 389 (588)
Q Consensus 310 ~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~ 389 (588)
++.+++|...+..++..++...+++++|||+++.+......++.++..+... ....++.+.+.......+ ..+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~ 214 (337)
T 2z0m_A 140 LMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQA 214 (337)
T ss_dssp HHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHH
T ss_pred HhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHH
Confidence 9999999999999999999999999999999999999999998887766432 222334444433332211 12233
Q ss_pred hh-cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe
Q 007829 390 LQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 390 l~-~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~ 468 (588)
+. ..+.++||||+++..++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 33 456799999999999999999886 6889999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 469 ~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
|++|+|+..|+||+||+||.|+.|.+++|+. . +...+..+.+.+
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~-~~~~~~~i~~~~ 334 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-N-EYWLEKEVKKVS 334 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-S-CHHHHHHHC---
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-C-cHHHHHHHHHHh
Confidence 9999999999999999999999999999999 4 555666555444
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-52 Score=459.79 Aligned_cols=331 Identities=20% Similarity=0.317 Sum_probs=276.0
Q ss_pred CCCCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 145 FKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 145 f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+.++++++.+.+.|++. ||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++. ..+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~--------------~~g~~l 88 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC--------------SDGFTL 88 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT--------------SSSEEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH--------------cCCcEE
Confidence 44678999999999995 999999999999999999999999999999999999999974 245899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH------hcCCcEEEeChHHHH------HHHH
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV------KRGVHIVVATPGRLK------DMLA 291 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l------~~~~~IvV~Tp~~l~------~~l~ 291 (588)
||+|+++|+.|+++.+.++ ++++..+.|+....+....+ ..+++|+|+||++|. +.+.
T Consensus 89 VisP~~~L~~q~~~~l~~~----------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL----------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH----------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHhc----------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 9999999999999999987 67888888887766543322 346899999999874 2222
Q ss_pred cccCCCCCcceeeecCCcccccCC--CHHHHHH--HHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcc
Q 007829 292 KKKMNLDNCRYLTLDEADRLVDLG--FEDDIRE--VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN 367 (588)
Q Consensus 292 ~~~~~l~~~~~lIvDEah~l~~~~--~~~~i~~--i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~ 367 (588)
....+..+++|||||||++.+|| |.+.+.. ++....+..++++||||+++.+...+..++..+..+.+.. ....
T Consensus 159 -~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r 236 (591)
T 2v1x_A 159 -KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNR 236 (591)
T ss_dssp -HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCC
T ss_pred -hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCC
Confidence 24457789999999999999998 7776654 3444445789999999999998888877776543222221 1223
Q ss_pred cceEEEeeeh--hhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 007829 368 LDVIQEVEYV--KQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 368 ~~v~~~~~~~--~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g 443 (588)
.++...+... .....+..+++.+.. .+.++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g 316 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN 316 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 3444443332 234566777777764 467899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 444 ~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+.+|||||+++++|||+|+|++||+|++|.|++.|+||+|||||.|++|.|++|++..
T Consensus 317 ~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 317 EIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp SSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred CCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 9999999999999999999999999999999999999999999999999999999765
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.6e-50 Score=440.62 Aligned_cols=330 Identities=22% Similarity=0.328 Sum_probs=270.1
Q ss_pred CCCCCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 142 IKNFKDMRFPEPILKKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+.+|+++++++.+.+.|++ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------~g 66 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------NG 66 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------------SS
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------------CC
Confidence 3589999999999999999 59999999999999999999999999999999999999998842 35
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HH-hcCCcEEEeChHHHHHHHHcccCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VV-KRGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l-~~~~~IvV~Tp~~l~~~l~~~~~~ 296 (588)
.+|||+|+++|+.|+.+.+..+ ++.+..+.|+....+... .+ ...++|+|+||++|........+.
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~----------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~ 136 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQAN----------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA 136 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT
T ss_pred CEEEECChHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh
Confidence 7999999999999999999886 677888888876654432 22 345899999999995332223344
Q ss_pred CCCcceeeecCCcccccCC--CHHHHHHH---HHhhhhcceEEEEeeccchHHHHHHHHhc--cCCeEEEecCCCCcccc
Q 007829 297 LDNCRYLTLDEADRLVDLG--FEDDIREV---FDHFKAQRQTLLFSATMPTKIQNFARSAL--VKPVTVNVGRAGAANLD 369 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~--~~~~i~~i---~~~~~~~~q~l~~SAT~~~~i~~~~~~~l--~~p~~i~~~~~~~~~~~ 369 (588)
..++++|||||||++.+|| |...+..+ ...+ +..+++++|||+++.+...+...+ ..+..+ ..... ..+
T Consensus 137 ~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~--r~~ 212 (523)
T 1oyw_A 137 HWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD--RPN 212 (523)
T ss_dssp TSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC--CTT
T ss_pred hCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC--CCc
Confidence 5789999999999999998 66655543 3333 357899999999998766444433 344433 32222 233
Q ss_pred eEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007829 370 VIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 370 v~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 448 (588)
+...+. ....+...++..+.. .+.++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+.+||
T Consensus 213 l~~~v~--~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 213 IRYMLM--EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp EEEEEE--ECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred eEEEEE--eCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 333322 223445556666655 45699999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|||+++++|||+|++++||+|++|.|++.|+||+||+||.|..|.+++|+++.
T Consensus 291 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 99999999999999999999999999999999999999999999999999765
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-52 Score=454.39 Aligned_cols=384 Identities=26% Similarity=0.431 Sum_probs=260.0
Q ss_pred HHHHHHHhcCeE-eecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHH
Q 007829 121 ACDLIRKQWHII-VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 121 ~~~~~r~~~~i~-v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~ 197 (588)
+...+...+++. +.....|.++..|...++++.+.+.+.+.|+..|+++|.++|+.++++ +++++++|||||||++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 96 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp -------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 333344444432 233344556677788889999999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCc
Q 007829 198 VLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVH 277 (588)
Q Consensus 198 ~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~ 277 (588)
++|++..+... ..++++|||+|+++|+.|+++.+.+++... .+.+....++..... ...+++
T Consensus 176 ~~~il~~l~~~--------~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~ 237 (508)
T 3fho_A 176 ALTMLSRVDAS--------VPKPQAICLAPSRELARQIMDVVTEMGKYT------EVKTAFGIKDSVPKG----AKIDAQ 237 (508)
T ss_dssp HHHHHHHSCTT--------CCSCCEEEECSCHHHHHHHHHHHHHHSTTS------SCCEEC--------------CCCCS
T ss_pred HHHHHHHHHhC--------CCCceEEEEECcHHHHHHHHHHHHHhCCcc------CeeEEEEeCCccccc----ccCCCC
Confidence 99999876432 346789999999999999999999997543 455555555433221 233689
Q ss_pred EEEeChHHHHHHHHcccCCCCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCe
Q 007829 278 IVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 278 IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
|+|+||++|.+.+....+.+..+++|||||||++.+ .++...+..++..++...|++++|||+++.+..+...++.++.
T Consensus 238 Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 317 (508)
T 3fho_A 238 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN 317 (508)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCE
T ss_pred EEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCe
Confidence 999999999999988888899999999999999988 6888999999999999999999999999999999999999888
Q ss_pred EEEecCCCCcccceEEEeeeh-hhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Q 007829 357 TVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEERE 434 (588)
Q Consensus 357 ~i~~~~~~~~~~~v~~~~~~~-~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~ 434 (588)
.+...........+.+.+... ....+...+...+.. ..+++||||+++..++.++..|...++.+..+||++++.+|.
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~ 397 (508)
T 3fho_A 318 EIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRD 397 (508)
T ss_dssp EECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTG
T ss_pred EEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Confidence 776655544444444444443 334455555555544 457999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCC------CChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHH
Q 007829 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP------AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 508 (588)
Q Consensus 435 ~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p------~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~ 508 (588)
.+++.|++|+.+|||||+++++|+|+|++++||++++| .++..|+||+||+||.|+.|.+++|+....+...+.
T Consensus 398 ~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~ 477 (508)
T 3fho_A 398 AIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMN 477 (508)
T ss_dssp GGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHH
T ss_pred HHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999 789999999999999999999999999776666677
Q ss_pred HHHHHHHHhcCcCc
Q 007829 509 DLKHLLQEAKQRIP 522 (588)
Q Consensus 509 ~l~~~l~~~~~~vp 522 (588)
.+.+.+......+|
T Consensus 478 ~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 478 AIQEYFQRPITRVP 491 (508)
T ss_dssp HHHHHSCCCCC---
T ss_pred HHHHHHCCCcccCC
Confidence 77666554444444
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.3e-50 Score=426.55 Aligned_cols=326 Identities=22% Similarity=0.336 Sum_probs=265.8
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 153 PILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 153 ~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+.+.+++. |+ .|+|+|.++++.+++|+|++++||||||||++|++|++..+ ..++++|||+||++|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-----------~~~~~~lil~Pt~~L 76 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTL 76 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-----------TTTCCEEEEESSHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-----------cCCCEEEEEECCHHH
Confidence 445566665 55 79999999999999999999999999999999999988754 257899999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCceEEEEEcCcch---HHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeeecC
Q 007829 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM---RSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDE 307 (588)
+.|+++.+.+++. . ++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||
T Consensus 77 ~~q~~~~~~~~~~-~------~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDE 147 (414)
T 3oiy_A 77 VKQTLERLQKLAD-E------KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDD 147 (414)
T ss_dssp HHHHHHHHHHHCC-S------SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESC
T ss_pred HHHHHHHHHHHcc-C------CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeC
Confidence 9999999999864 3 7899999999988 5566667666 99999999999888764 6677999999999
Q ss_pred Cccccc-----------CCCHHH-HHHHHHhhh-----------hcceEEEEeec-cchHHH-HHHHHhccCCeEEEecC
Q 007829 308 ADRLVD-----------LGFEDD-IREVFDHFK-----------AQRQTLLFSAT-MPTKIQ-NFARSALVKPVTVNVGR 362 (588)
Q Consensus 308 ah~l~~-----------~~~~~~-i~~i~~~~~-----------~~~q~l~~SAT-~~~~i~-~~~~~~l~~p~~i~~~~ 362 (588)
||++.+ +||... +..++..++ ..+|++++||| +|..+. .+....+. +.+..
T Consensus 148 aH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~ 223 (414)
T 3oiy_A 148 VDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR 223 (414)
T ss_dssp HHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC
T ss_pred hHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc
Confidence 987653 778888 888998887 88899999999 565544 23333332 22223
Q ss_pred CCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHHh
Q 007829 363 AGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV-AVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 363 ~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~r~~~~~~F~ 441 (588)
......++.+.+........+ ...+...+.++||||+++..++.+++.|...|+.+. .+||. +|. ++.|+
T Consensus 224 ~~~~~~~i~~~~~~~~~~~~l---~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~ 294 (414)
T 3oiy_A 224 LVSVARNITHVRISSRSKEKL---VELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFK 294 (414)
T ss_dssp CCCCCCSEEEEEESSCCHHHH---HHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHH
T ss_pred cccccccchheeeccCHHHHH---HHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHh
Confidence 333444566665555444444 444444558999999999999999999999999998 89994 444 99999
Q ss_pred cCCcEEEEE----cCccccCCCCCC-cceEEecCCC--CChhHHHHHhcccCCCC----CccEEEEEEcCCCChhHHHHH
Q 007829 442 AGKKDVLVA----TDVASKGLDFPD-IQHVINYDMP--AEIENYVHRIGRTGRCG----KTGIATTFINKNQSETTLLDL 510 (588)
Q Consensus 442 ~g~~~VLVa----T~~~~~GlDip~-v~~VI~~~~p--~s~~~y~QriGRagR~g----~~g~~~~~~~~~~~~~~~~~l 510 (588)
+|+.+|||| |+++++|+|+|+ +++||+||+| .++..|+||+||+||.| ..|.+++|+ .+...+..+
T Consensus 295 ~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l 371 (414)
T 3oiy_A 295 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESL 371 (414)
T ss_dssp TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHH
T ss_pred CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHH
Confidence 999999999 999999999999 9999999999 99999999999999987 589999999 255667777
Q ss_pred HHHHH
Q 007829 511 KHLLQ 515 (588)
Q Consensus 511 ~~~l~ 515 (588)
.+.+.
T Consensus 372 ~~~~~ 376 (414)
T 3oiy_A 372 KTRLL 376 (414)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77766
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.9e-48 Score=429.02 Aligned_cols=355 Identities=21% Similarity=0.250 Sum_probs=272.9
Q ss_pred ccccCCHHHHHHHHHhcCeEe-ecCCCCCCCCCCCCCCCCHHHHHHHH--------HCCCCCCcHHHHHHHHHHhcCCCE
Q 007829 113 PIRRMSKKACDLIRKQWHIIV-DGEDIPPPIKNFKDMRFPEPILKKLK--------AKGIVQPTPIQVQGLPVVLSGRDM 183 (588)
Q Consensus 113 ~~~~~~~~~~~~~r~~~~i~v-~g~~~p~p~~~f~~~~l~~~l~~~l~--------~~g~~~p~~~Q~~~i~~il~g~dv 183 (588)
.+..+|++++......+...+ +|+. +.+.+.+++. ..|| .|||+|..++|.++.|+
T Consensus 35 ~~~~lsd~el~~~t~~~~~~~~~g~~------------ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~-- 99 (844)
T 1tf5_A 35 DYENLSDDALKHKTIEFKERLEKGAT------------TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN-- 99 (844)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--
Confidence 456788888876666554333 3332 2222333332 4699 99999999999999999
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007829 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 i~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
|+.|+||+|||++|.+|++...+ .|+.++||+||++||.|.++.+..++..+ ++++.+++||.
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL-----------~g~~vlVltptreLA~qd~e~~~~l~~~l------gl~v~~i~gg~ 162 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNAL-----------TGKGVHVVTVNEYLASRDAEQMGKIFEFL------GLTVGLNLNSM 162 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT-----------TSSCEEEEESSHHHHHHHHHHHHHHHHHT------TCCEEECCTTS
T ss_pred EEEccCCcHHHHHHHHHHHHHHH-----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhc------CCeEEEEeCCC
Confidence 99999999999999999985443 36679999999999999999999998877 89999999998
Q ss_pred chHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-cCC---------------CHHHH
Q 007829 264 DMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-DLG---------------FEDDI 320 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~-~~~---------------~~~~i 320 (588)
+...+. ...+++|+|+||++| .|+|..+ .+.++.+.++||||||+|+ +++ |...+
T Consensus 163 ~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i 240 (844)
T 1tf5_A 163 SKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA 240 (844)
T ss_dssp CHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHH
T ss_pred CHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHH
Confidence 765443 344699999999999 6776543 4668899999999999998 775 56789
Q ss_pred HHHHHhhh---------hcceEE-----------------EEeeccchH---HHHHH--HHhcc-CCeEE-------Eec
Q 007829 321 REVFDHFK---------AQRQTL-----------------LFSATMPTK---IQNFA--RSALV-KPVTV-------NVG 361 (588)
Q Consensus 321 ~~i~~~~~---------~~~q~l-----------------~~SAT~~~~---i~~~~--~~~l~-~p~~i-------~~~ 361 (588)
..++..++ ..+|++ +||||++.. +...+ ..++. +...+ .+.
T Consensus 241 ~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivD 320 (844)
T 1tf5_A 241 NAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVD 320 (844)
T ss_dssp HHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBC
T ss_pred HHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEee
Confidence 99999987 367887 999998743 33322 22221 11111 000
Q ss_pred ----C-------------------------CCCc-------------------------------------------ccc
Q 007829 362 ----R-------------------------AGAA-------------------------------------------NLD 369 (588)
Q Consensus 362 ----~-------------------------~~~~-------------------------------------------~~~ 369 (588)
+ .... +..
T Consensus 321 e~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p 400 (844)
T 1tf5_A 321 SFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP 400 (844)
T ss_dssp TTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSC
T ss_pred cccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCC
Confidence 0 0000 000
Q ss_pred e----EEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007829 370 V----IQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442 (588)
Q Consensus 370 v----~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~ 442 (588)
+ .+.+.+.....|+..++..+.. .+.++||||+|+..++.|+..|...|+++.++||++.+.+|..+.+.|+.
T Consensus 401 ~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~ 480 (844)
T 1tf5_A 401 VVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK 480 (844)
T ss_dssp CCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST
T ss_pred cccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC
Confidence 0 0113345567787777776643 56799999999999999999999999999999999988888766666665
Q ss_pred CCcEEEEEcCccccCCCCC--------CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCC
Q 007829 443 GKKDVLVATDVASKGLDFP--------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 443 g~~~VLVaT~~~~~GlDip--------~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~ 503 (588)
| .|+|||++++||+||+ ++.|||+|++|.|...|+||+|||||.|.+|.+++|++..+.
T Consensus 481 g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 481 G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred C--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 5 6999999999999999 788999999999999999999999999999999999998754
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-48 Score=451.21 Aligned_cols=332 Identities=19% Similarity=0.210 Sum_probs=269.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
..|..+++++.+...+...++..|+|+|.++|+.+++|++++++||||||||++|++|++..+. .++++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-----------~g~rv 230 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRV 230 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-----------TTCEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-----------cCCeE
Confidence 3677788887777777667777899999999999999999999999999999999999998763 47799
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
||++||++|+.|+++.+.+++. .+.+++|+.... .+++|+|+||++|.+++.+....+.++++
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~----------~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG----------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS----------SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhC----------CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 9999999999999999999852 577788887643 35899999999999999988777889999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH--HHHHHHHhccCCeEEEecCCCCcccceEEEeee----
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK--IQNFARSALVKPVTVNVGRAGAANLDVIQEVEY---- 376 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~--i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~---- 376 (588)
|||||||+|.+++|+..+..++..++...|+|+||||+|+. +..++......|+.+......... +...+..
T Consensus 294 VVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p--l~~~~~~~~~~ 371 (1108)
T 3l9o_A 294 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHGD 371 (1108)
T ss_dssp EEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--EEEEEEETTSS
T ss_pred EEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--ceEEEeecCCc
Confidence 99999999999999999999999999999999999999875 446666666666555433221111 1111000
Q ss_pred -----hh----------------------------------------------hHHHHHHHHHHhhc-CCCCEEEEeCcc
Q 007829 377 -----VK----------------------------------------------QEAKIVYLLECLQK-TPPPVLIFCENK 404 (588)
Q Consensus 377 -----~~----------------------------------------------~~~k~~~ll~~l~~-~~~~viIF~~s~ 404 (588)
+. ....+..++..+.. ...++||||+++
T Consensus 372 ~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr 451 (1108)
T 3l9o_A 372 GIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSK 451 (1108)
T ss_dssp CCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred ceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcH
Confidence 00 03344445555544 456999999999
Q ss_pred ccHHHHHHHHHHcCCc---------------------------------------EEEEeCCCCHHHHHHHHHHHhcCCc
Q 007829 405 ADVDDIHEYLLLKGVE---------------------------------------AVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 405 ~~~~~l~~~L~~~g~~---------------------------------------~~~ihg~~~~~~r~~~~~~F~~g~~ 445 (588)
..|+.++..|...++. +..+||+|++.+|..+++.|++|.+
T Consensus 452 ~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~i 531 (1108)
T 3l9o_A 452 RDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFL 531 (1108)
T ss_dssp HHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCC
Confidence 9999999998653332 7899999999999999999999999
Q ss_pred EEEEEcCccccCCCCCCcceEEecCCCC--------ChhHHHHHhcccCCCC--CccEEEEEEcCCCCh
Q 007829 446 DVLVATDVASKGLDFPDIQHVINYDMPA--------EIENYVHRIGRTGRCG--KTGIATTFINKNQSE 504 (588)
Q Consensus 446 ~VLVaT~~~~~GlDip~v~~VI~~~~p~--------s~~~y~QriGRagR~g--~~g~~~~~~~~~~~~ 504 (588)
+|||||+++++|||+|++++||+++.|+ |+..|+||+|||||.| ..|.+++++.+....
T Consensus 532 kVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 532 KVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp CEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH
T ss_pred eEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH
Confidence 9999999999999999999999888743 6677999999999999 678888888776443
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.9e-47 Score=416.40 Aligned_cols=327 Identities=17% Similarity=0.215 Sum_probs=202.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+...|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... .+.++++|||+||++|+.|+++.+.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc------ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999998876521 12377899999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeeecCCcccccCCCHHHH
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~l~~~~~lIvDEah~l~~~~~~~~i 320 (588)
++... ++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.++++...+
T Consensus 78 ~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~ 151 (556)
T 4a2p_A 78 HFERQ------GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 151 (556)
T ss_dssp HHGGG------TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHH
T ss_pred Hhccc------CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHH
Confidence 98765 7899999999887777777777899999999999999988777 7899999999999999988743333
Q ss_pred H-HHHHh-h---hhcceEEEEeeccch-----------HHHHHHH------------------HhccCCeEEEecCCCCc
Q 007829 321 R-EVFDH-F---KAQRQTLLFSATMPT-----------KIQNFAR------------------SALVKPVTVNVGRAGAA 366 (588)
Q Consensus 321 ~-~i~~~-~---~~~~q~l~~SAT~~~-----------~i~~~~~------------------~~l~~p~~i~~~~~~~~ 366 (588)
. ..+.. + .+..|+++||||++. .+..+.. .+...|...........
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
T 4a2p_A 152 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 231 (556)
T ss_dssp HHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCS
T ss_pred HHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCc
Confidence 2 22211 1 345789999999953 1111111 11122211111000000
Q ss_pred ccc-------e-------------------EE--Eee------eh-----------------------------------
Q 007829 367 NLD-------V-------------------IQ--EVE------YV----------------------------------- 377 (588)
Q Consensus 367 ~~~-------v-------------------~~--~~~------~~----------------------------------- 377 (588)
... . .. .+. ++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 311 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 000 0 00 000 00
Q ss_pred ---------------------------------------------------------hhHHHHHHHHHHhh-----cCCC
Q 007829 378 ---------------------------------------------------------KQEAKIVYLLECLQ-----KTPP 395 (588)
Q Consensus 378 ---------------------------------------------------------~~~~k~~~ll~~l~-----~~~~ 395 (588)
....|+..+.+.+. ..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~ 391 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 391 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCc
Confidence 01224444555553 4567
Q ss_pred CEEEEeCccccHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCCC
Q 007829 396 PVLIFCENKADVDDIHEYLLLK------------GVEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 396 ~viIF~~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~GlDip~ 462 (588)
++||||+++..++.+++.|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|+
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~ 471 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 471 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchh
Confidence 9999999999999999999775 5666677889999999999999999 99999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 463 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 463 v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
+++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+
T Consensus 472 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 472 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp -CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 9999999999999999999999 999 8899999998763
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-45 Score=417.85 Aligned_cols=336 Identities=22% Similarity=0.331 Sum_probs=264.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
..+|+++++|+.+.+.+.+.||..|+|+|.++++. +.++++++++||||||||+++.+|++..+.. .+.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~ 76 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----------NGG 76 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----------SCS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH----------CCC
Confidence 35799999999999999999999999999999999 7799999999999999999999999987754 367
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~ 300 (588)
+++|++|+++||.|+++.++.+. .+ ++++..++|+....... + ..++|+|+||++|..++.+....++++
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~------g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 146 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LI------GFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEV 146 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GG------TCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cC------CCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhcc
Confidence 99999999999999999996443 22 67888888886654431 1 368999999999999888776668999
Q ss_pred ceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccce--------EE
Q 007829 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDV--------IQ 372 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v--------~~ 372 (588)
++||+||||.+.+.+++..+..++..++ ..|+|++|||+++. ..+.. ++..+......+.......+ ..
T Consensus 147 ~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 147 NYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp EEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred CEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCccCCCCCCCCceEEEEecCCcccce
Confidence 9999999999998889889999888887 78999999999863 34443 33322111100000000000 00
Q ss_pred Eeeehh--------hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC--------------------------
Q 007829 373 EVEYVK--------QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG-------------------------- 418 (588)
Q Consensus 373 ~~~~~~--------~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-------------------------- 418 (588)
.+.+.. .......+.+.+ ..++++||||+++..++.++..|....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSL-SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred eeecCcchhhhcccchHHHHHHHHHH-hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 111111 123333344444 456899999999999999999998642
Q ss_pred ----------CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC-------CCCChhH
Q 007829 419 ----------VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD-------MPAEIEN 477 (588)
Q Consensus 419 ----------~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~----~~-------~p~s~~~ 477 (588)
..+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~ 382 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIME 382 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHH
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHH
Confidence 24889999999999999999999999999999999999999999999999 99 8999999
Q ss_pred HHHHhcccCCCC--CccEEEEEEcCC
Q 007829 478 YVHRIGRTGRCG--KTGIATTFINKN 501 (588)
Q Consensus 478 y~QriGRagR~g--~~g~~~~~~~~~ 501 (588)
|.||+|||||.| ..|.|++++++.
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCc
Confidence 999999999998 479999998765
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.1e-46 Score=424.88 Aligned_cols=332 Identities=20% Similarity=0.310 Sum_probs=268.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
+|+++++|+.+.+.+.+.||..|+|+|.++++. ++++++++++||||||||++|.+|++..+.. .+.++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT----------QGGKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH----------HCSEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCCEE
Confidence 588999999999999999999999999999998 8899999999999999999999999988764 26789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
||++|+++||.|+++.+.++.. + ++++..++|+....... ...++|+|+||++|..++.+....++++++
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~------g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~ 141 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-I------GLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKI 141 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-G------TCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-c------CCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCE
Confidence 9999999999999999965532 2 68899999976654331 235899999999998888877666889999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEE------eee
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE------VEY 376 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~------~~~ 376 (588)
||+||||++.++++...+..++..++...|+|++|||+++. ..+.. ++..+. +..... ...+... +.+
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r---p~~l~~~~~~~~~~~~ 215 (720)
T 2zj8_A 142 LVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDWR---PVKLRRGVFYQGFVTW 215 (720)
T ss_dssp EEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCCC---SSEEEEEEEETTEEEE
T ss_pred EEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCCC---CCcceEEEEeCCeeec
Confidence 99999999999889999999999888789999999999863 34443 333211 111100 0111110 111
Q ss_pred hh-----hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc------------------C---------------
Q 007829 377 VK-----QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK------------------G--------------- 418 (588)
Q Consensus 377 ~~-----~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~------------------g--------------- 418 (588)
.. .......+.+.+ ..++++||||+++..++.++..|... +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 216 EDGSIDRFSSWEELVYDAI-RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp TTSCEEECSSTTHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred cccchhhhhHHHHHHHHHH-hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 11 112222333333 35689999999999999999998753 1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC----CCCChhHHHHHhcccCCCC-
Q 007829 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD----MPAEIENYVHRIGRTGRCG- 489 (588)
Q Consensus 419 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~----~~----~p~s~~~y~QriGRagR~g- 489 (588)
..+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 24899999999999999999999999999999999999999999999999 76 5899999999999999998
Q ss_pred -CccEEEEEEcCCC
Q 007829 490 -KTGIATTFINKNQ 502 (588)
Q Consensus 490 -~~g~~~~~~~~~~ 502 (588)
..|.|++++++.+
T Consensus 375 ~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD 388 (720)
T ss_dssp CSEEEEEEECSSSC
T ss_pred CCCceEEEEecCcc
Confidence 5789999988763
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.7e-46 Score=436.11 Aligned_cols=324 Identities=22% Similarity=0.327 Sum_probs=263.1
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007829 155 LKKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 155 ~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.+.+.. .|| .|||+|.++|+.++.|+|++++||||||||++|++|++..+ ..++++|||+||++||.
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-----------~~~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-----------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-----------hcCCeEEEEechHHHHH
Confidence 344443 477 69999999999999999999999999999998888877655 25789999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCceEEEEEcCcch---HHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeeecCCc
Q 007829 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM---RSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 234 Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah 309 (588)
|+++.+.+++ . .++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||
T Consensus 136 Q~~~~l~~l~-~------~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 136 QTLERLQKLA-D------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp HHHHHHHTTS-C------TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHH
T ss_pred HHHHHHHHhh-C------CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCC
Confidence 9999999975 2 27899999999988 6667777776 99999999999888764 567899999999997
Q ss_pred ccc----------c-CCCHHH-HHHHHHhhh-----------hcceEEEEeec-cchHHHH-HHHHhccCCeEEEecCCC
Q 007829 310 RLV----------D-LGFEDD-IREVFDHFK-----------AQRQTLLFSAT-MPTKIQN-FARSALVKPVTVNVGRAG 364 (588)
Q Consensus 310 ~l~----------~-~~~~~~-i~~i~~~~~-----------~~~q~l~~SAT-~~~~i~~-~~~~~l~~p~~i~~~~~~ 364 (588)
++. + +||... +..++..++ ..+|+++|||| .|..+.. +....+. +.+....
T Consensus 207 ~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~ 282 (1104)
T 4ddu_A 207 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV 282 (1104)
T ss_dssp HHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC
T ss_pred ccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC
Confidence 654 4 889888 899999888 78999999999 5655442 3333332 2333333
Q ss_pred CcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHHhcC
Q 007829 365 AANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV-AVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 365 ~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~r~~~~~~F~~g 443 (588)
....++.+.+........+ ...+...++++||||+++..++.++..|...|+.+. .+|| +|.+ ++.|++|
T Consensus 283 ~~~~~i~~~~~~~~k~~~L---~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G 353 (1104)
T 4ddu_A 283 SVARNITHVRISSRSKEKL---VELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVG 353 (1104)
T ss_dssp CCCCCEEEEEESCCCHHHH---HHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHT
T ss_pred CCcCCceeEEEecCHHHHH---HHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCC
Confidence 4455666666555444444 444444568999999999999999999999999998 9999 2555 9999999
Q ss_pred CcEEEEE----cCccccCCCCCC-cceEEecCCCC---------------------------------------------
Q 007829 444 KKDVLVA----TDVASKGLDFPD-IQHVINYDMPA--------------------------------------------- 473 (588)
Q Consensus 444 ~~~VLVa----T~~~~~GlDip~-v~~VI~~~~p~--------------------------------------------- 473 (588)
+.+|||| |+++++|||+|+ |++|||||+|.
T Consensus 354 ~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~ 433 (1104)
T 4ddu_A 354 KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLT 433 (1104)
T ss_dssp SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCC
T ss_pred CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 999999999999 99999999998
Q ss_pred ---------------------------ChhHHHHHhcccCCCCC----ccEEEEEEcCCCChhHHHHHHHHHH
Q 007829 474 ---------------------------EIENYVHRIGRTGRCGK----TGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 474 ---------------------------s~~~y~QriGRagR~g~----~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
++..|+||+|||||.|. .|.+++|+ + +...+..|.+.+.
T Consensus 434 ~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~-d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 434 QKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--E-DEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--C-CHHHHHHHHHHHH
T ss_pred cHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--e-cHHHHHHHHHHHh
Confidence 78899999999999654 45666666 3 6677777777776
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.1e-45 Score=406.93 Aligned_cols=323 Identities=19% Similarity=0.256 Sum_probs=225.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.+|+|+|.++++.++.|+|+++++|||||||++|++|++..+.... ...++++|||+||++|+.|+++.+.+++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------CGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------cCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999999999999998876531 1237789999999999999999999998
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeeecCCcccccCCCHHHH-H
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDDI-R 321 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~l~~~~~lIvDEah~l~~~~~~~~i-~ 321 (588)
... ++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.+.+....+ .
T Consensus 77 ~~~------~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 77 ERL------GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp HTT------TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred ccC------CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHH
Confidence 765 7899999999988777777777899999999999999988776 7889999999999999987632222 2
Q ss_pred HHHHhh-----hhcceEEEEeeccchH-----------HHHHHHHhccCCeEEEecCC------CCcccceEEE-ee---
Q 007829 322 EVFDHF-----KAQRQTLLFSATMPTK-----------IQNFARSALVKPVTVNVGRA------GAANLDVIQE-VE--- 375 (588)
Q Consensus 322 ~i~~~~-----~~~~q~l~~SAT~~~~-----------i~~~~~~~l~~p~~i~~~~~------~~~~~~v~~~-~~--- 375 (588)
..+... ....|+++||||++.. +..+.. .+..+........ .......... +.
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRT 229 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCS
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcc
Confidence 222221 1446899999999542 111111 1111111100000 0000000000 00
Q ss_pred --------------------------------------------eh----------------------------------
Q 007829 376 --------------------------------------------YV---------------------------------- 377 (588)
Q Consensus 376 --------------------------------------------~~---------------------------------- 377 (588)
++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (555)
T 3tbk_A 230 SNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRK 309 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred ----------------------------------------------------------hhHHHHHHHHHHhhc-----CC
Q 007829 378 ----------------------------------------------------------KQEAKIVYLLECLQK-----TP 394 (588)
Q Consensus 378 ----------------------------------------------------------~~~~k~~~ll~~l~~-----~~ 394 (588)
....++..+.+.+.. ..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 389 (555)
T 3tbk_A 310 YNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPE 389 (555)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 002244444444432 45
Q ss_pred CCEEEEeCccccHHHHHHHHHHcC------------CcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCC
Q 007829 395 PPVLIFCENKADVDDIHEYLLLKG------------VEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g------------~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~GlDip 461 (588)
.++||||+++..++.+++.|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|||+|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 799999999999999999998764 345556779999999999999999 9999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
++++||+||+|+|+..|+||+|| ||. +.|.+++|+++.
T Consensus 470 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 470 ECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp SCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred cCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 99999999999999999999999 999 899999999876
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.3e-46 Score=424.04 Aligned_cols=333 Identities=18% Similarity=0.246 Sum_probs=218.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 155 LKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
...+...|+..|+|+|.++++.++.|+|+|+++|||+|||++|++|++..+.... .+.++++|||+||++|+.|
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------TTCCCCEEEECSSHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------cCCCCeEEEEECCHHHHHH
Confidence 3456677999999999999999999999999999999999999999998776531 1234789999999999999
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeeecCCccccc
Q 007829 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~l~~~~~lIvDEah~l~~ 313 (588)
+.+.+.+++... ++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+
T Consensus 77 ~~~~~~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 77 NKSVFSKYFERH------GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHHHHHHHTTTT------TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHhccC------CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 999999997643 7899999999877666677777899999999999999988766 788999999999999986
Q ss_pred CCCHHHH-HHHHHh-h----hhcceEEEEeeccc-------hH-HHHHHH---------------------HhccCCeEE
Q 007829 314 LGFEDDI-REVFDH-F----KAQRQTLLFSATMP-------TK-IQNFAR---------------------SALVKPVTV 358 (588)
Q Consensus 314 ~~~~~~i-~~i~~~-~----~~~~q~l~~SAT~~-------~~-i~~~~~---------------------~~l~~p~~i 358 (588)
......+ ...+.. + +...+++++|||+. .. +..+.. .+...|...
T Consensus 151 ~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~ 230 (696)
T 2ykg_A 151 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF 230 (696)
T ss_dssp TCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEE
T ss_pred cccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCcee
Confidence 6422221 112221 1 35679999999996 11 111111 111122111
Q ss_pred EecCCCCcc-----------------------------------------------------------------------
Q 007829 359 NVGRAGAAN----------------------------------------------------------------------- 367 (588)
Q Consensus 359 ~~~~~~~~~----------------------------------------------------------------------- 367 (588)
.........
T Consensus 231 ~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (696)
T 2ykg_A 231 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 310 (696)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHH
T ss_pred EEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHH
Confidence 100000000
Q ss_pred ----------------------------------------cceEEEeee----------------hhhHHHHHHHHHHhh
Q 007829 368 ----------------------------------------LDVIQEVEY----------------VKQEAKIVYLLECLQ 391 (588)
Q Consensus 368 ----------------------------------------~~v~~~~~~----------------~~~~~k~~~ll~~l~ 391 (588)
..+.+.+.. .....++..+...+.
T Consensus 311 ~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~ 390 (696)
T 2ykg_A 311 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 390 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 000000000 002234445555554
Q ss_pred c-----CCCCEEEEeCccccHHHHHHHHHHcC----CcEEEE--------eCCCCHHHHHHHHHHHhc-CCcEEEEEcCc
Q 007829 392 K-----TPPPVLIFCENKADVDDIHEYLLLKG----VEAVAV--------HGGKDQEEREYAISSFKA-GKKDVLVATDV 453 (588)
Q Consensus 392 ~-----~~~~viIF~~s~~~~~~l~~~L~~~g----~~~~~i--------hg~~~~~~r~~~~~~F~~-g~~~VLVaT~~ 453 (588)
. .+.++||||+++..++.+++.|...| +.+..+ ||+|++.+|..+++.|++ |+.+|||||++
T Consensus 391 ~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v 470 (696)
T 2ykg_A 391 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 470 (696)
T ss_dssp HHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEES
T ss_pred HHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech
Confidence 3 35789999999999999999999988 888888 559999999999999998 99999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+++|||+|++++||+||+|+|+..|+||+|| ||. +.|.++.|++..
T Consensus 471 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp SCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 9999999999999999999999999999999 998 789999998765
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7e-46 Score=419.50 Aligned_cols=330 Identities=22% Similarity=0.319 Sum_probs=261.5
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 144 NFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 144 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+|++++ +|+.+.+.+++.||..|+|+|.++++.++++++++++||||||||++|.+|++..+.. +++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCc
Confidence 578888 9999999999999999999999999999999999999999999999999999987542 568
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
+||++|+++||.|+++.++.+. .+ ++++..++|+....... ..+++|+|+||++|..++.+....+++++
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~-~~------g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE-KI------GLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT-TT------TCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred EEEEeCcHHHHHHHHHHHHHHH-hc------CCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 9999999999999999996443 22 68899999987654321 13689999999999998888766688999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhh---hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEe----
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV---- 374 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~---- 374 (588)
+||+||||++.++++...+..++..+ .+..|++++|||+++ ...+.. ++..+.. ..... ...+...+
T Consensus 141 ~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~~-~~~~r---~~~l~~~~~~~~ 214 (702)
T 2p6r_A 141 CLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADYY-VSDWR---PVPLVEGVLCEG 214 (702)
T ss_dssp EEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEEE-ECCCC---SSCEEEEEECSS
T ss_pred EEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCcc-cCCCC---CccceEEEeeCC
Confidence 99999999999988888888887766 467899999999986 344444 4433221 11111 11111110
Q ss_pred --eehhhH-------HHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc----------------------------
Q 007829 375 --EYVKQE-------AKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK---------------------------- 417 (588)
Q Consensus 375 --~~~~~~-------~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~---------------------------- 417 (588)
.+.... .....+.+.+ ..++++||||+++..++.++..|...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 215 TLELFDGAFSTSRRVKFEELVEECV-AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE 293 (702)
T ss_dssp EEEEEETTEEEEEECCHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHH
T ss_pred eeeccCcchhhhhhhhHHHHHHHHH-hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHH
Confidence 111100 0233333333 45689999999999999999998753
Q ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC---CCCChhHHHHHhcccCCC
Q 007829 418 --GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD---MPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 418 --g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~----~~---~p~s~~~y~QriGRagR~ 488 (588)
+..+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.|..+|+||+|||||.
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~ 373 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRP 373 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCT
T ss_pred HHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCC
Confidence 235788999999999999999999999999999999999999999999999 66 789999999999999999
Q ss_pred C--CccEEEEEEcCC
Q 007829 489 G--KTGIATTFINKN 501 (588)
Q Consensus 489 g--~~g~~~~~~~~~ 501 (588)
| ..|.|++++++.
T Consensus 374 g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 374 GMDERGEAIIIVGKR 388 (702)
T ss_dssp TTCSCEEEEEECCGG
T ss_pred CCCCCceEEEEecCc
Confidence 8 578999998876
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-44 Score=416.88 Aligned_cols=312 Identities=19% Similarity=0.241 Sum_probs=255.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+|. |+|+|.++++.+++|++++++||||||||++|.+|++..+. .++++||++||++|+.|+++.+.+
T Consensus 84 ~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----------~g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----------cCCeEEEECChHHHHHHHHHHHHH
Confidence 564 99999999999999999999999999999999999887652 467999999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHH
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~ 321 (588)
++. ++.+++|+..... +++|+|+||++|.+++.+....+.++++|||||||+|.+++++..+.
T Consensus 152 ~~~----------~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e 214 (1010)
T 2xgj_A 152 EFG----------DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWE 214 (1010)
T ss_dssp HHS----------CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred HhC----------CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHH
Confidence 862 5777888876543 47999999999999998887888999999999999999999999999
Q ss_pred HHHHhhhhcceEEEEeeccchHHH--HHHHHhccCCeEEEecCCCCcccceEEEeeehh---------------------
Q 007829 322 EVFDHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVGRAGAANLDVIQEVEYVK--------------------- 378 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~--------------------- 378 (588)
.++..++...|++++|||+|+... .++......++.+....... ..+.+.+....
T Consensus 215 ~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1010)
T 2xgj_A 215 ETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQK 292 (1010)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHH
T ss_pred HHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHH
Confidence 999999999999999999987532 44444445555444332111 11111111000
Q ss_pred --------------------------h--------HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCc---
Q 007829 379 --------------------------Q--------EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVE--- 420 (588)
Q Consensus 379 --------------------------~--------~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~--- 420 (588)
. ...+..++..+.. ...++||||+++..|+.++..|...++.
T Consensus 293 ~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 372 (1010)
T 2xgj_A 293 AMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 372 (1010)
T ss_dssp HHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHH
T ss_pred HHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChH
Confidence 0 1223445555544 3459999999999999999998764432
Q ss_pred ------------------------------------EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcc
Q 007829 421 ------------------------------------AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464 (588)
Q Consensus 421 ------------------------------------~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~ 464 (588)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 78899999999999999999999999999999999999999999
Q ss_pred eEEe----cCC----CCChhHHHHHhcccCCCCC--ccEEEEEEcCCCCh
Q 007829 465 HVIN----YDM----PAEIENYVHRIGRTGRCGK--TGIATTFINKNQSE 504 (588)
Q Consensus 465 ~VI~----~~~----p~s~~~y~QriGRagR~g~--~g~~~~~~~~~~~~ 504 (588)
+||+ ||. |.++..|+||+|||||.|. .|.+++|+++..+.
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 9999 999 8999999999999999997 59999999876443
No 29
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.2e-45 Score=402.21 Aligned_cols=317 Identities=19% Similarity=0.239 Sum_probs=230.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|. .|+|+|..++|.++.|+ |+.|+||||||++|++|++..++ .|+.++||+||++||.|+++.+..
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-----------TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-----------TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-----------cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 54 89999999999999998 99999999999999999986543 356799999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-c
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~-~ 313 (588)
++..+ ++++.+++||.+... ..+..+++|+|+||++| .|+|..+ .+.++.+.++|+||||+|+ +
T Consensus 138 l~~~l------gl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD 209 (853)
T 2fsf_A 138 LFEFL------GLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILID 209 (853)
T ss_dssp HHHHT------TCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTT
T ss_pred HHHhc------CCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHh
Confidence 99877 899999999987643 34445799999999999 7888754 3668899999999999998 5
Q ss_pred CC---------------CHHHHHHHHHhhhh--------------------cceEE------------------------
Q 007829 314 LG---------------FEDDIREVFDHFKA--------------------QRQTL------------------------ 334 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~--------------------~~q~l------------------------ 334 (588)
++ |...+..++..++. .+|++
T Consensus 210 ~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~ 289 (853)
T 2fsf_A 210 EARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGES 289 (853)
T ss_dssp TTTCEEEEEEC---------------------------------------------------------------------
T ss_pred cCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccccc
Confidence 54 56778888888864 45654
Q ss_pred EEeeccchHHHHH---H--HHhcc--------C-------------------------C----eEEEecCCCCcccceE-
Q 007829 335 LFSATMPTKIQNF---A--RSALV--------K-------------------------P----VTVNVGRAGAANLDVI- 371 (588)
Q Consensus 335 ~~SAT~~~~i~~~---~--~~~l~--------~-------------------------p----~~i~~~~~~~~~~~v~- 371 (588)
+||||++..+..+ + ..++. + + ..+.+.........+.
T Consensus 290 Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~ 369 (853)
T 2fsf_A 290 LYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITF 369 (853)
T ss_dssp -------------------------------------------------------------------CCCCCEEEEEEEH
T ss_pred ccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeeh
Confidence 8999986522211 1 11110 0 0 0111111111111111
Q ss_pred ----------------------------------------------EEeeehhhHHHHHHHHHHhh---cCCCCEEEEeC
Q 007829 372 ----------------------------------------------QEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCE 402 (588)
Q Consensus 372 ----------------------------------------------~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~ 402 (588)
+.+.+.....|+..+...+. ..+.|+||||+
T Consensus 370 qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 370 QNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp HHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred HHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 11234566778877777664 35679999999
Q ss_pred ccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc-------------------
Q 007829 403 NKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDI------------------- 463 (588)
Q Consensus 403 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v------------------- 463 (588)
|+..++.|+..|...|+++.++||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999988888888889888 699999999999999974
Q ss_pred ------------------ceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 464 ------------------QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 464 ------------------~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
.|||++++|.|...|.||+|||||.|.+|.+++|++..+
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998874
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4e-45 Score=418.55 Aligned_cols=327 Identities=17% Similarity=0.198 Sum_probs=208.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+.... .+.++++|||+||++|+.|+++.+.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999998876521 1237789999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeeecCCcccccCCCHHH
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~l~~~~~lIvDEah~l~~~~~~~~ 319 (588)
+++... ++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+.+....
T Consensus 318 ~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~ 391 (797)
T 4a2q_A 318 HHFERQ------GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 391 (797)
T ss_dssp HHHGGG------TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHH
T ss_pred HhcccC------CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHH
Confidence 998765 7899999999888777777778899999999999999988776 788999999999999998653222
Q ss_pred HH-HHHHhh----hhcceEEEEeeccch-----------HHHHHHH------------------HhccCCeEEEecCCCC
Q 007829 320 IR-EVFDHF----KAQRQTLLFSATMPT-----------KIQNFAR------------------SALVKPVTVNVGRAGA 365 (588)
Q Consensus 320 i~-~i~~~~----~~~~q~l~~SAT~~~-----------~i~~~~~------------------~~l~~p~~i~~~~~~~ 365 (588)
+. ..+... ....|+++||||++. .+..+.. .++..|..........
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 22 222211 344789999999952 2222211 1112221111000000
Q ss_pred cccc--------------e------------EEEee--------ehh---------------------------------
Q 007829 366 ANLD--------------V------------IQEVE--------YVK--------------------------------- 378 (588)
Q Consensus 366 ~~~~--------------v------------~~~~~--------~~~--------------------------------- 378 (588)
.... . .+... ++.
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 0000 0 00000 000
Q ss_pred -----------------------------------------------------------hHHHHHHHHHHhh-----cCC
Q 007829 379 -----------------------------------------------------------QEAKIVYLLECLQ-----KTP 394 (588)
Q Consensus 379 -----------------------------------------------------------~~~k~~~ll~~l~-----~~~ 394 (588)
...|+..+.+.+. ..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCC
Confidence 0224444444443 346
Q ss_pred CCEEEEeCccccHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCC
Q 007829 395 PPVLIFCENKADVDDIHEYLLLK------------GVEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~GlDip 461 (588)
.++||||+++..++.++++|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 79999999999999999999873 6667778999999999999999999 9999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
++++||+||+|+|+..|+||+|| ||. +.|.+++|++..
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 99999999999999999999999 999 899999999876
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.4e-46 Score=432.64 Aligned_cols=324 Identities=19% Similarity=0.292 Sum_probs=257.3
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 156 KKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 156 ~~l~~-~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
+.+.+ .||. | |+|.++|+.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----------TSCCEEEEESCHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------cCCeEEEEeccHHHHHH
Confidence 55555 5999 9 9999999999999999999999999998 89999877654 47899999999999999
Q ss_pred HHHHHHHHhhcccccCCCCc----eEEEEEcCcchHHH---HHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecC
Q 007829 235 TYEVVEQFLTPMRDAGYPDL----RTLLCIGGVDMRSQ---LEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i----~~~~~~gg~~~~~~---~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDE 307 (588)
+++.+.+++..+ ++ ++..++||.+...+ ...+.. ++|+|+||++|.+++.+ ++++++|||||
T Consensus 115 ~~~~l~~l~~~~------~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDE 183 (1054)
T 1gku_B 115 AAETIRKYAEKA------GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDD 183 (1054)
T ss_dssp HHHHHHHHHTTT------CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESC
T ss_pred HHHHHHHHHhhc------CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeC
Confidence 999999998755 56 89999999887764 334455 99999999999887655 67899999999
Q ss_pred CcccccCCCHHHHHHHHHhhh-----------hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeee
Q 007829 308 ADRLVDLGFEDDIREVFDHFK-----------AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY 376 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~-----------~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~ 376 (588)
||+|+++ ...++.++..++ ..+|+++||||++.. ..+...++..+..+.+........++.+.+.
T Consensus 184 ah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~- 259 (1054)
T 1gku_B 184 VDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV- 259 (1054)
T ss_dssp HHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE-
T ss_pred hhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe-
Confidence 9999994 488888888773 467899999999887 5444333333333333333333344544443
Q ss_pred hhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE----cC
Q 007829 377 VKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA----TD 452 (588)
Q Consensus 377 ~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVa----T~ 452 (588)
...+...+...+...+.++||||+++..|+.+++.|... +.+..+||++. .+++.|++|+.+|||| |+
T Consensus 260 --~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 260 --NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp --SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC---
T ss_pred --chhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCC
Confidence 233444455666666789999999999999999999888 99999999983 7889999999999999 99
Q ss_pred ccccCCCCCCc-ceEEecCCC-----------------------------------------------------------
Q 007829 453 VASKGLDFPDI-QHVINYDMP----------------------------------------------------------- 472 (588)
Q Consensus 453 ~~~~GlDip~v-~~VI~~~~p----------------------------------------------------------- 472 (588)
++++|||+|+| ++||+||+|
T Consensus 332 v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999996 999999999
Q ss_pred ------------CChhHHHHHhcccCCCCCccE--EEEEEcCCCChhHHHHHHHHHHH
Q 007829 473 ------------AEIENYVHRIGRTGRCGKTGI--ATTFINKNQSETTLLDLKHLLQE 516 (588)
Q Consensus 473 ------------~s~~~y~QriGRagR~g~~g~--~~~~~~~~~~~~~~~~l~~~l~~ 516 (588)
.|...|+||+|||||.|..|. +++|+..+ +...+..|.+.+..
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 789999999999999887764 78888776 56666677666653
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-43 Score=380.13 Aligned_cols=319 Identities=21% Similarity=0.293 Sum_probs=248.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.+++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------YGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----------SCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 6999999999999999 99999999999999999999877652 467899999999999999999999863
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHH
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~ 324 (588)
.+..++..++|+......... ..+++|+|+||+.|...+....+.+..+++||+||||++.+......+...+
T Consensus 78 ------~~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 78 ------LPPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp ------SCGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred ------cchhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHH
Confidence 235688999998776654333 3357999999999999988888888999999999999998765445555556
Q ss_pred HhhhhcceEEEEeeccchH---HHHHHHHhccCCeEEEecCCCCc-----ccceEEE-e---------------------
Q 007829 325 DHFKAQRQTLLFSATMPTK---IQNFARSALVKPVTVNVGRAGAA-----NLDVIQE-V--------------------- 374 (588)
Q Consensus 325 ~~~~~~~q~l~~SAT~~~~---i~~~~~~~l~~p~~i~~~~~~~~-----~~~v~~~-~--------------------- 374 (588)
.......+++++|||++.. +..+...+......+........ ....... .
T Consensus 151 ~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 5556678899999999743 33333333222111110000000 0000000 0
Q ss_pred --------------------------------------------------------------------eeh---------
Q 007829 375 --------------------------------------------------------------------EYV--------- 377 (588)
Q Consensus 375 --------------------------------------------------------------------~~~--------- 377 (588)
.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence 000
Q ss_pred -----------------------------hhHHHHHHHHHHhhc-----CCCCEEEEeCccccHHHHHHHHHHcCCcEEE
Q 007829 378 -----------------------------KQEAKIVYLLECLQK-----TPPPVLIFCENKADVDDIHEYLLLKGVEAVA 423 (588)
Q Consensus 378 -----------------------------~~~~k~~~ll~~l~~-----~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ 423 (588)
....++..+.+.+.. .+.++||||+++..++.+++.|...|+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 111234444444433 5779999999999999999999999999999
Q ss_pred EeC--------CCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEE
Q 007829 424 VHG--------GKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495 (588)
Q Consensus 424 ihg--------~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~ 495 (588)
+|| +++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEE
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred EEEcCCC
Q 007829 496 TFINKNQ 502 (588)
Q Consensus 496 ~~~~~~~ 502 (588)
.|++++.
T Consensus 470 ~l~~~~t 476 (494)
T 1wp9_A 470 ILMAKGT 476 (494)
T ss_dssp EEEETTS
T ss_pred EEEecCC
Confidence 9999874
No 33
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.6e-44 Score=394.11 Aligned_cols=318 Identities=19% Similarity=0.243 Sum_probs=255.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+ .|+++|..++|.++.|+ |+.++||+|||++|.+|++..++. |+.++||+||++||.|.++.+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 488 99999999999999998 999999999999999999765432 5679999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV- 312 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~- 312 (588)
.++..+ ++++.+++||.+...+ ....+++|+|+||++| .|+|..+ .+.++.+.++||||||+|+
T Consensus 174 ~l~~~l------GLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 174 RVHRFL------GLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp HHHHHT------TCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred HHHhhc------CCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 998877 8999999999876443 3334689999999999 7888754 4678899999999999998
Q ss_pred cC---------------CCHHHHHHHHHhhh---------hcceEE-----------------EEeeccchH---HHHHH
Q 007829 313 DL---------------GFEDDIREVFDHFK---------AQRQTL-----------------LFSATMPTK---IQNFA 348 (588)
Q Consensus 313 ~~---------------~~~~~i~~i~~~~~---------~~~q~l-----------------~~SAT~~~~---i~~~~ 348 (588)
|+ +|...+..++..++ ..+|++ +||||++.. +...+
T Consensus 246 DeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL 325 (922)
T 1nkt_A 246 DEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNAL 325 (922)
T ss_dssp TGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHH
T ss_pred hcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHH
Confidence 43 57789999999997 678898 999998753 33222
Q ss_pred --HHhcc-C-------CeEEEecCC-C----------------------------CcccceE------------------
Q 007829 349 --RSALV-K-------PVTVNVGRA-G----------------------------AANLDVI------------------ 371 (588)
Q Consensus 349 --~~~l~-~-------p~~i~~~~~-~----------------------------~~~~~v~------------------ 371 (588)
..++. + ...+.+... + .....+.
T Consensus 326 ~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa 405 (922)
T 1nkt_A 326 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA 405 (922)
T ss_dssp HHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC
T ss_pred HHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc
Confidence 12221 1 111111100 0 0000000
Q ss_pred -----------------------------EEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCC
Q 007829 372 -----------------------------QEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGV 419 (588)
Q Consensus 372 -----------------------------~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~ 419 (588)
+.+.+.....|+..++..+. ..+.|+||||+|+..++.|+..|...|+
T Consensus 406 ~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 406 QTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp GGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 11234456677777776664 3567999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc------------------------------------
Q 007829 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDI------------------------------------ 463 (588)
Q Consensus 420 ~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v------------------------------------ 463 (588)
++.++||++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999998888887777888877 699999999999999975
Q ss_pred ----------------ceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 464 ----------------QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 464 ----------------~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
.|||++++|.|...|.||+|||||.|.+|.+++|++..+
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 499999999999999999999999999999999999874
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.5e-44 Score=407.50 Aligned_cols=323 Identities=20% Similarity=0.264 Sum_probs=227.0
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH-HHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT-YEVVEQF 242 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~-~~~~~~~ 242 (588)
..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+..... .+.++++|||+|+++|+.|+ .+.+.++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-----ASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-----HTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-----cCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999988765421 12347899999999999999 9999999
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHH------HcccCCCCCcceeeecCCcccccCCC
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDML------AKKKMNLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l------~~~~~~l~~~~~lIvDEah~l~~~~~ 316 (588)
+.. .+++..++|+.........+..+++|+|+||++|.+.+ ....+.+..+++|||||||++...++
T Consensus 81 ~~~-------~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~ 153 (699)
T 4gl2_A 81 LKK-------WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 153 (699)
T ss_dssp HTT-------TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBS
T ss_pred cCc-------CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccch
Confidence 752 38899999998877766777778999999999999888 44556788999999999999866443
Q ss_pred HHH-HHHHHHh----hh---------hcceEEEEeeccchH-----------HHHHHHHh------------------cc
Q 007829 317 EDD-IREVFDH----FK---------AQRQTLLFSATMPTK-----------IQNFARSA------------------LV 353 (588)
Q Consensus 317 ~~~-i~~i~~~----~~---------~~~q~l~~SAT~~~~-----------i~~~~~~~------------------l~ 353 (588)
... +...+.. .. +..+++++|||++.. +..+...+ ..
T Consensus 154 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~ 233 (699)
T 4gl2_A 154 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQ 233 (699)
T ss_dssp SCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSC
T ss_pred HHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcC
Confidence 332 2222221 11 557899999999862 22222211 11
Q ss_pred CCeEEEecCCCCcc-c----------------ce--EEEee---------------------------------------
Q 007829 354 KPVTVNVGRAGAAN-L----------------DV--IQEVE--------------------------------------- 375 (588)
Q Consensus 354 ~p~~i~~~~~~~~~-~----------------~v--~~~~~--------------------------------------- 375 (588)
.|............ . .+ ...+.
T Consensus 234 ~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (699)
T 4gl2_A 234 EPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQI 313 (699)
T ss_dssp CCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 12111000000000 0 00 00000
Q ss_pred -------------------------------------ehh-------------------------hHHHHHHHHHHhhc-
Q 007829 376 -------------------------------------YVK-------------------------QEAKIVYLLECLQK- 392 (588)
Q Consensus 376 -------------------------------------~~~-------------------------~~~k~~~ll~~l~~- 392 (588)
... ...++..+++.+..
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~ 393 (699)
T 4gl2_A 314 NDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQ 393 (699)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 000 00111112222222
Q ss_pred ----C-CCCEEEEeCccccHHHHHHHHHHc------CCcEEEEeCC--------CCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007829 393 ----T-PPPVLIFCENKADVDDIHEYLLLK------GVEAVAVHGG--------KDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 393 ----~-~~~viIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~--------~~~~~r~~~~~~F~~g~~~VLVaT~~ 453 (588)
. +.++||||+++..++.++++|... |+.+..+||+ |++.+|..+++.|++|+.+|||||++
T Consensus 394 ~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~ 473 (699)
T 4gl2_A 394 YTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV 473 (699)
T ss_dssp HHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS
T ss_pred HhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc
Confidence 2 689999999999999999999987 8999999999 99999999999999999999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+++|||+|++++||+||+|+|+..|+||+|||||.| .+++|+...
T Consensus 474 ~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 474 AEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred cccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 999999999999999999999999999999987665 445555443
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-43 Score=410.73 Aligned_cols=327 Identities=17% Similarity=0.202 Sum_probs=206.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... .+.++++|||+||++|+.|+++.+.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~------~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999987654321 1237789999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeeecCCcccccCCCHHH
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~l~~~~~lIvDEah~l~~~~~~~~ 319 (588)
+++... ++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+.+....
T Consensus 318 ~~~~~~------~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~ 391 (936)
T 4a2w_A 318 HHFERQ------GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 391 (936)
T ss_dssp HHHHTT------TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHhccc------CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHH
Confidence 998755 7899999999877766666667799999999999999988766 788999999999999998753222
Q ss_pred HH-HHHHhh----hhcceEEEEeeccch-----------HHHHHH------------------HHhccCCeEEEecCCCC
Q 007829 320 IR-EVFDHF----KAQRQTLLFSATMPT-----------KIQNFA------------------RSALVKPVTVNVGRAGA 365 (588)
Q Consensus 320 i~-~i~~~~----~~~~q~l~~SAT~~~-----------~i~~~~------------------~~~l~~p~~i~~~~~~~ 365 (588)
+. .++... ....|+++||||++. .+..+. ..++..|..........
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 471 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccc
Confidence 21 222211 334789999999952 122211 11222222111110000
Q ss_pred cccc--------------e------------EEEee--------eh----------------------------------
Q 007829 366 ANLD--------------V------------IQEVE--------YV---------------------------------- 377 (588)
Q Consensus 366 ~~~~--------------v------------~~~~~--------~~---------------------------------- 377 (588)
.... . ..... ++
T Consensus 472 ~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 551 (936)
T 4a2w_A 472 IHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (936)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 0000 0 00000 00
Q ss_pred ----------------------------------------------------------hhHHHHHHHHHHhhc-----CC
Q 007829 378 ----------------------------------------------------------KQEAKIVYLLECLQK-----TP 394 (588)
Q Consensus 378 ----------------------------------------------------------~~~~k~~~ll~~l~~-----~~ 394 (588)
....|+..+.+.+.+ .+
T Consensus 552 ~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (936)
T 4a2w_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (936)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCC
Confidence 001233444444433 35
Q ss_pred CCEEEEeCccccHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCC
Q 007829 395 PPVLIFCENKADVDDIHEYLLLK------------GVEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~GlDip 461 (588)
.++||||+++..++.++++|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp 711 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CC
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcch
Confidence 79999999999999999999976 6667778999999999999999999 9999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
++++||+||+|+|+..|+||+|| ||. +.|.+++|++..
T Consensus 712 ~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp CCSEEEEESCCSCSHHHHCC---------CCCEEEEESCH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 99999999999999999999999 999 789999999775
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.4e-43 Score=394.79 Aligned_cols=320 Identities=18% Similarity=0.211 Sum_probs=240.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEE
Q 007829 152 EPILKKLKAKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIV 225 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil 225 (588)
+.+...+...+| .||++|.++|+.++.+ .|++++||||||||++|++|++..+.. +.+++|+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----------g~qvlvl 423 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----------GFQTAFM 423 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----------TSCEEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCeEEEE
Confidence 344455567799 8999999999999865 599999999999999999999987643 6789999
Q ss_pred cCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcc
Q 007829 226 CPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 226 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~l~~~~ 301 (588)
+||++||.|+++.+.+++..+ ++++..++|+....+. +..+..| ++|+|+||+.|.+ .+.+.+++
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~------gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~ 492 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKF------NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLG 492 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCS------SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCC
T ss_pred eCcHHHHHHHHHHHHHHhhhc------CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCc
Confidence 999999999999999998755 7899999999877654 3344454 8999999987743 46688999
Q ss_pred eeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHH
Q 007829 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~ 381 (588)
+||+||+|++.. ..+..+.......++++||||+++....+.. ........+.........+...+.......
T Consensus 493 lVVIDEaHr~g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~ 565 (780)
T 1gm5_A 493 LVIIDEQHRFGV-----KQREALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTMLVPMDRVN 565 (780)
T ss_dssp EEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECCCCSSTHH
T ss_pred eEEecccchhhH-----HHHHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEEeccchHH
Confidence 999999999632 1222333334568999999998776544332 222111111111111222322222222223
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccc--------cHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007829 382 KIVYLLECLQKTPPPVLIFCENKA--------DVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~--------~~~~l~~~L~~---~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVa 450 (588)
.+...+......+.+++|||++.. .++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 566 ~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 566 EVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 333333322345679999999764 47888888887 4788999999999999999999999999999999
Q ss_pred cCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 451 TDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~-s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|+++++|+|+|++++||+++.|. +...|+||+||+||.|+.|.|++++++.
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999999996 7899999999999999999999998843
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2e-42 Score=400.41 Aligned_cols=308 Identities=20% Similarity=0.248 Sum_probs=243.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+| .|+|+|.++|+.+++|+|++++||||||||++|++|+...+. .++++||++|+++|+.|+++.+.+
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 44 589999999999999999999999999999999999876542 467899999999999999999998
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHH
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~ 321 (588)
++. ++++..++|+..... .++|+|+||++|.+++......+..+++|||||||++.+++|+..+.
T Consensus 105 ~~~--------~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e 169 (997)
T 4a4z_A 105 TFD--------DVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWE 169 (997)
T ss_dssp TC----------CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHH
T ss_pred HcC--------CCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHH
Confidence 743 678899999876543 37999999999999998887788999999999999999999999999
Q ss_pred HHHHhhhhcceEEEEeeccchHH--HHHHHHhccCCeEEEecCCCCcccceEEEee------------------------
Q 007829 322 EVFDHFKAQRQTLLFSATMPTKI--QNFARSALVKPVTVNVGRAGAANLDVIQEVE------------------------ 375 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~~i--~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~------------------------ 375 (588)
.++..++...|+|++|||+|+.. .++.......++.+....... ..+.+.+.
T Consensus 170 ~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 170 EVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRP--VPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCS--SCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred HHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCC--ccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 99999999999999999998653 222222222232222111100 00100000
Q ss_pred ---------------------------------------------------------------------ehhhHHHHHHH
Q 007829 376 ---------------------------------------------------------------------YVKQEAKIVYL 386 (588)
Q Consensus 376 ---------------------------------------------------------------------~~~~~~k~~~l 386 (588)
.......+..+
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEI 327 (997)
T ss_dssp HHHC-----------------------------------------------------------------CCCCTTHHHHH
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHH
Confidence 00012234556
Q ss_pred HHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCC---------------------------------------cEEEEeC
Q 007829 387 LECLQKT-PPPVLIFCENKADVDDIHEYLLLKGV---------------------------------------EAVAVHG 426 (588)
Q Consensus 387 l~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~---------------------------------------~~~~ihg 426 (588)
+..+... ..++||||+++..|+.++..|...++ .+..+||
T Consensus 328 i~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~ 407 (997)
T 4a4z_A 328 VNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHG 407 (997)
T ss_dssp HHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecC
Confidence 6666554 46999999999999999999976655 4789999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCC---------ChhHHHHHhcccCCCC--CccEEE
Q 007829 427 GKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA---------EIENYVHRIGRTGRCG--KTGIAT 495 (588)
Q Consensus 427 ~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~---------s~~~y~QriGRagR~g--~~g~~~ 495 (588)
+|++.+|..+++.|++|.++|||||+++++|||+|+ ..||++++|+ |+..|+||+|||||.| ..|.++
T Consensus 408 gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 408 GLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp TSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence 999999999999999999999999999999999999 5556555555 9999999999999998 556777
Q ss_pred EEEc
Q 007829 496 TFIN 499 (588)
Q Consensus 496 ~~~~ 499 (588)
+++.
T Consensus 487 ~l~~ 490 (997)
T 4a4z_A 487 VMAY 490 (997)
T ss_dssp EECC
T ss_pred EecC
Confidence 7764
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1e-40 Score=391.43 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=258.8
Q ss_pred CCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhc----CC--CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007829 149 RFPEPILKKLKAK-GIVQPTPIQVQGLPVVLS----GR--DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 149 ~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~----g~--dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+.+....+.+... +| .|||+|.++++.++. |+ |+++++|||+|||++++++++..+. .+++
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----------~g~~ 654 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----------NHKQ 654 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----------TTCE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----------hCCe
Confidence 4556666666655 66 479999999999986 66 9999999999999999999887542 4679
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhc-CCcEEEeChHHHHHHHHcccCCC
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
++||+||++||.|+++.+.+++..+ ++++..++|.....+. +..+.. .++|+|+||+.| .+.+.+
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~------~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~ 723 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANW------PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKF 723 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTT------TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCC
T ss_pred EEEEechHHHHHHHHHHHHHHhhcC------CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccc
Confidence 9999999999999999999887644 6788888876655443 334444 489999999755 345678
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeeh
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~ 377 (588)
.++++|||||||++ ......++..++...++++||||+++....+....+.++..+.. .......+...+...
T Consensus 724 ~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r~~i~~~~~~~ 796 (1151)
T 2eyq_A 724 KDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARRLAVKTFVREY 796 (1151)
T ss_dssp SSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBCBCEEEEEEEC
T ss_pred cccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCccccEEEEecC
Confidence 99999999999994 45667778888888999999999988777766665554433322 222233444444433
Q ss_pred hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007829 378 KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 455 (588)
........++..+. .+++++|||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 797 ~~~~i~~~il~~l~-~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e 875 (1151)
T 2eyq_A 797 DSMVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 875 (1151)
T ss_dssp CHHHHHHHHHHHHT-TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTG
T ss_pred CHHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcce
Confidence 33333344444443 4678999999999999999999887 88999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCC-CCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 456 KGLDFPDIQHVINYDM-PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~-p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
+|+|+|++++||+++. ++++.+|+||+||+||.|+.|.|++++.+.
T Consensus 876 ~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 876 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp GGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred eeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999999988 569999999999999999999999998764
No 39
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=5.4e-41 Score=329.97 Aligned_cols=238 Identities=39% Similarity=0.707 Sum_probs=218.1
Q ss_pred CCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHH
Q 007829 117 MSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 117 ~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~ 196 (588)
++.+++..+|+++.+.+.|...|.|+.+|.++++++.+++.|.+.||..|+|+|.++|+.+++|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCC
Q 007829 197 FVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGV 276 (588)
Q Consensus 197 ~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~ 276 (588)
|++|++..+.... ......++++|||+||++|+.|+++.+.+++... ++++..++||.+...+...+..++
T Consensus 83 ~~l~~l~~l~~~~---~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~ 153 (242)
T 3fe2_A 83 YLLPAIVHINHQP---FLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC------RLKSTCIYGGAPKGPQIRDLERGV 153 (242)
T ss_dssp HHHHHHHHHHTSC---CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc---ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc------CceEEEEECCCChHHHHHHhcCCC
Confidence 9999998876531 1122457899999999999999999999998765 789999999999998888888999
Q ss_pred cEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCe
Q 007829 277 HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 277 ~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
+|+|+||++|.+++......+.++++||+||||++.+++|...+..+++.++..+|+++||||+|+.+.++++.++.+|+
T Consensus 154 ~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 154 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp SEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred CEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCE
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q 007829 357 TVNVGRA 363 (588)
Q Consensus 357 ~i~~~~~ 363 (588)
.+.++..
T Consensus 234 ~i~~~~~ 240 (242)
T 3fe2_A 234 HINIGAL 240 (242)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9987653
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.2e-41 Score=403.82 Aligned_cols=331 Identities=15% Similarity=0.209 Sum_probs=247.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLS-GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~-g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
++.+..+.+...+|..++|+|.++++.++. ++|++++||||||||++|.+|++..+.+. ++.++||++|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---------~~~kavyi~P~ 981 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---------SEGRCVYITPM 981 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---------TTCCEEEECSC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---------CCCEEEEEcCh
Confidence 456777888888999999999999999984 57899999999999999999999988762 46789999999
Q ss_pred HHHHHHHHHHHHHHhh-cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc--cCCCCCcceeee
Q 007829 229 RELARQTYEVVEQFLT-PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK--KMNLDNCRYLTL 305 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~-~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~--~~~l~~~~~lIv 305 (588)
++||.|+++.+.+.+. .+ ++++..++|+...... . ..+++|+|||||+|..++.+. ...++++++||+
T Consensus 982 raLa~q~~~~~~~~f~~~~------g~~V~~ltGd~~~~~~--~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvVi 1052 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRL------NKKVVLLTGETSTDLK--L-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVV 1052 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTS------CCCEEECCSCHHHHHH--H-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEE
T ss_pred HHHHHHHHHHHHHHhchhc------CCEEEEEECCCCcchh--h-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEe
Confidence 9999999999986543 33 7889999998654332 2 234799999999996666542 234778999999
Q ss_pred cCCcccccCCCHHHHHHHHHh-------hhhcceEEEEeeccchHHHHHHHHhccCCe-EEEecCCCCcccceEEEeeeh
Q 007829 306 DEADRLVDLGFEDDIREVFDH-------FKAQRQTLLFSATMPTKIQNFARSALVKPV-TVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 306 DEah~l~~~~~~~~i~~i~~~-------~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~-~i~~~~~~~~~~~v~~~~~~~ 377 (588)
||+|++.+. ++..+..++.. .+...|+|++|||+++. .+++..+-..+. ...+. .......+...+...
T Consensus 1053 DE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~-~~~RPvpL~~~i~~~ 1129 (1724)
T 4f92_B 1053 DEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFH-PNVRPVPLELHIQGF 1129 (1724)
T ss_dssp CCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECC-GGGCSSCEEEEEEEE
T ss_pred echhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeC-CCCCCCCeEEEEEec
Confidence 999998874 55665555544 34578999999999864 445543332221 22221 112222222222211
Q ss_pred ---hhHHHHH----HHHHHh--hcCCCCEEEEeCccccHHHHHHHHHHc-------------------------------
Q 007829 378 ---KQEAKIV----YLLECL--QKTPPPVLIFCENKADVDDIHEYLLLK------------------------------- 417 (588)
Q Consensus 378 ---~~~~k~~----~ll~~l--~~~~~~viIF~~s~~~~~~l~~~L~~~------------------------------- 417 (588)
....+.. .+...+ ....+++||||+++..|+.++..|...
T Consensus 1130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1130 NISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp CCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHH
T ss_pred cCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHH
Confidence 1111111 111122 234679999999999999988776431
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----------cCCCCChhHHHHHhcc
Q 007829 418 ---GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----------YDMPAEIENYVHRIGR 484 (588)
Q Consensus 418 ---g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~----------~~~p~s~~~y~QriGR 484 (588)
...++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|+..+||. ...|.++.+|+||+||
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GR 1289 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGH 1289 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcc
Confidence 234789999999999999999999999999999999999999999999983 3346789999999999
Q ss_pred cCCCCC--ccEEEEEEcCC
Q 007829 485 TGRCGK--TGIATTFINKN 501 (588)
Q Consensus 485 agR~g~--~g~~~~~~~~~ 501 (588)
|||.|. .|.|++++.+.
T Consensus 1290 AGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1290 ANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp BCCTTTCSCEEEEEEEEGG
T ss_pred ccCCCCCCceEEEEEecch
Confidence 999987 68899988765
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.6e-43 Score=385.16 Aligned_cols=323 Identities=15% Similarity=0.125 Sum_probs=241.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007829 148 MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 148 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+++++.+.+++... ...|+|+|+.+++.+++|+|++++||||||||++|++|++..+.. .++++||++|
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----------~~~~vLvl~P 223 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----------RRLRTLILAP 223 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEES
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEcC
Confidence 55666666555443 478899999899999999999999999999999999999988765 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecC
Q 007829 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDE 307 (588)
||+||.|+++.+..+ .+. +.+... . .....+..+.++|.+.+...+... ..++++++|||||
T Consensus 224 treLa~Qi~~~l~~~------------~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDE 285 (618)
T 2whx_A 224 TRVVAAEMEEALRGL------------PIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDE 285 (618)
T ss_dssp SHHHHHHHHHHTTTS------------CEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEES
T ss_pred hHHHHHHHHHHhcCC------------cee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEEC
Confidence 999999999877532 122 222110 0 000123467788888887665544 4588999999999
Q ss_pred CcccccCCCHHHHHHHHHhhh-hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHH
Q 007829 308 ADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYL 386 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l 386 (588)
||++ +.+|...+..++..++ ..+|+++||||++..+..++. .++..+.+..... . ..+..+
T Consensus 286 ah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~-~-------------~~~~~l 347 (618)
T 2whx_A 286 AHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP-E-------------RSWNTG 347 (618)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC-S-------------SCCSSS
T ss_pred CCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC-H-------------HHHHHH
Confidence 9998 7778788888888775 678999999999887543332 2333332221100 0 001122
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceE
Q 007829 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~V 466 (588)
+..+.+..+++||||+++..++.+++.|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 348 l~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 348 FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp CHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 33344457799999999999999999999999999999984 688899999999999999999999999997 9988
Q ss_pred --------------------EecCCCCChhHHHHHhcccCCCCC-ccEEEEEEc---CCCChhHHHHHHHHHHHhcCcCc
Q 007829 467 --------------------INYDMPAEIENYVHRIGRTGRCGK-TGIATTFIN---KNQSETTLLDLKHLLQEAKQRIP 522 (588)
Q Consensus 467 --------------------I~~~~p~s~~~y~QriGRagR~g~-~g~~~~~~~---~~~~~~~~~~l~~~l~~~~~~vp 522 (588)
|+|++|.+.++|+||+|||||.|. .|.+++|++ +. +...+..+...+......+|
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~-d~~~l~~le~~i~l~~~~~~ 501 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN-DEDHAHWTEAKMLLDNIYTP 501 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC-CTTCHHHHHHHHHHTTCCCT
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchh-hHHHHHHHHhHhccccccCC
Confidence 777889999999999999999965 999999997 44 55667777776655555555
Q ss_pred h
Q 007829 523 P 523 (588)
Q Consensus 523 ~ 523 (588)
.
T Consensus 502 ~ 502 (618)
T 2whx_A 502 E 502 (618)
T ss_dssp T
T ss_pred c
Confidence 4
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-40 Score=401.01 Aligned_cols=340 Identities=17% Similarity=0.197 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
||+.....+ .||+.|+++|.+++|.++ +++|++++||||||||++|.+|++..+.+...........+.++|||+|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 455444443 279999999999999988 67899999999999999999999998876543323333467899999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc--CCCCCcceeeec
Q 007829 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK--MNLDNCRYLTLD 306 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~--~~l~~~~~lIvD 306 (588)
++||+|+++.+.+.+..+ ++++..++|+.+...+. ..+++|+|||||+|..++.+.. ..++.+++||||
T Consensus 144 kALa~e~~~~l~~~~~~~------gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiD 214 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATY------GITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILD 214 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTT------TCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEET
T ss_pred HHHHHHHHHHHHHHHhhC------CCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEe
Confidence 999999999999988765 88999999987654321 2458999999999955554432 237889999999
Q ss_pred CCcccccCCCHHHHHHHHHh-------hhhcceEEEEeeccchHHHHHHHHhccCCe--EEEecCCCCcccceEEEeeeh
Q 007829 307 EADRLVDLGFEDDIREVFDH-------FKAQRQTLLFSATMPTKIQNFARSALVKPV--TVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 307 Eah~l~~~~~~~~i~~i~~~-------~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~--~i~~~~~~~~~~~v~~~~~~~ 377 (588)
|+|.+.+ .++..+..++.. .+...|+|++|||+|+. .+++..+-..+. ...+. .......+.+.+...
T Consensus 215 EvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~-~~~RPvpL~~~~~~~ 291 (1724)
T 4f92_B 215 EIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFD-NSFRPVPLEQTYVGI 291 (1724)
T ss_dssp TGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECC-GGGCSSCEEEECCEE
T ss_pred cchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEEC-CCCccCccEEEEecc
Confidence 9998876 466666655543 35677999999999864 444443222210 11111 111222333332221
Q ss_pred h---hHHH---HH-HHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHc-------------------------------
Q 007829 378 K---QEAK---IV-YLLECLQK--TPPPVLIFCENKADVDDIHEYLLLK------------------------------- 417 (588)
Q Consensus 378 ~---~~~k---~~-~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~------------------------------- 417 (588)
. .... +. .+...+.+ .++++||||+|++.|+.++..|...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1724)
T 4f92_B 292 TEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNL 371 (1724)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTH
T ss_pred CCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccH
Confidence 1 1111 11 12222322 3568999999999999999888531
Q ss_pred ------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC------CCCChhHHHHH
Q 007829 418 ------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD------MPAEIENYVHR 481 (588)
Q Consensus 418 ------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~----~~------~p~s~~~y~Qr 481 (588)
...++++||||++.+|..+++.|++|.++|||||+++++|+|+|++++||. |+ .|.++.+|.||
T Consensus 372 ~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm 451 (1724)
T 4f92_B 372 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQM 451 (1724)
T ss_dssp HHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHH
T ss_pred HHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHh
Confidence 234789999999999999999999999999999999999999999999984 43 35689999999
Q ss_pred hcccCCCCC--ccEEEEEEcCCCC
Q 007829 482 IGRTGRCGK--TGIATTFINKNQS 503 (588)
Q Consensus 482 iGRagR~g~--~g~~~~~~~~~~~ 503 (588)
+|||||.|. .|.++++...++.
T Consensus 452 ~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 452 LGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp HTTBSCTTTCSCEEEEEEEESTTC
T ss_pred hhhccCCCCCCccEEEEEecchhH
Confidence 999999874 6899998887743
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.4e-42 Score=365.75 Aligned_cols=288 Identities=16% Similarity=0.158 Sum_probs=217.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDM-IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dv-i~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
|+..|+|+|. +||.+++++++ +++||||||||++|++|++..+.. .++++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----------RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----------cCCcEEEECCCHHHHHHHHHHhc
Confidence 6789999985 79999999888 888999999999999999987665 46789999999999999998774
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHH
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i 320 (588)
.+ .+....+.... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +.++...+
T Consensus 70 g~------------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~ 130 (451)
T 2jlq_A 70 GL------------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAAR 130 (451)
T ss_dssp TS------------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHH
T ss_pred Cc------------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHH
Confidence 22 22221111110 01234579999999998777654 55889999999999987 44333333
Q ss_pred HHHHHh-hhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEE
Q 007829 321 REVFDH-FKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLI 399 (588)
Q Consensus 321 ~~i~~~-~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viI 399 (588)
..+... ..+.+|+++||||+|..+..+ +..++..+....... . .. +. .+...+.+..+++||
T Consensus 131 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p-~----~~--~~-------~~~~~l~~~~~~~lV 193 (451)
T 2jlq_A 131 GYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP-E----RS--WN-------TGFDWITDYQGKTVW 193 (451)
T ss_dssp HHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC-S----SC--CS-------SSCHHHHHCCSCEEE
T ss_pred HHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCccCC-c----hh--hH-------HHHHHHHhCCCCEEE
Confidence 223222 345789999999998754332 223333333321100 0 00 00 112333445679999
Q ss_pred EeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC---------
Q 007829 400 FCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD--------- 470 (588)
Q Consensus 400 F~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~--------- 470 (588)
||+++..++.+++.|...|+.+..+||.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 194 F~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~ 268 (451)
T 2jlq_A 194 FVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILT 268 (451)
T ss_dssp ECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccc
Confidence 999999999999999999999999999764 56899999999999999999999999999 9999999
Q ss_pred -----------CCCChhHHHHHhcccCCCCC-ccEEEEEEcCC
Q 007829 471 -----------MPAEIENYVHRIGRTGRCGK-TGIATTFINKN 501 (588)
Q Consensus 471 -----------~p~s~~~y~QriGRagR~g~-~g~~~~~~~~~ 501 (588)
+|.+..+|+||+|||||.|. .|.+++|+...
T Consensus 269 ~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 269 DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 88888887543
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.3e-41 Score=367.92 Aligned_cols=310 Identities=16% Similarity=0.141 Sum_probs=234.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...|+|+|.++++.++.++++++++|||+|||+++++++...+.. .++++|||+||++|+.|+++.+.++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----------CSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 347999999999999999999999999999999999988876643 2458999999999999999999888
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
.. ++++++..++|+.....+ +..+++|+|+||+.|.. .....+.++++|||||||++.. ..+..
T Consensus 181 ~~------~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~ 244 (510)
T 2oca_A 181 RL------FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISS 244 (510)
T ss_dssp TS------SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHH
T ss_pred hc------CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHH
Confidence 43 336788888888766554 34568999999997633 2335577899999999999875 56778
Q ss_pred HHHhhhhcceEEEEeeccchHHHHHH-HHhccCCeEEEecCCCC------cccceEEEee--------------e-----
Q 007829 323 VFDHFKAQRQTLLFSATMPTKIQNFA-RSALVKPVTVNVGRAGA------ANLDVIQEVE--------------Y----- 376 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~i~~~~-~~~l~~p~~i~~~~~~~------~~~~v~~~~~--------------~----- 376 (588)
++..+....++++||||++.....+. ...+..+..+....... ....+..... +
T Consensus 245 il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (510)
T 2oca_A 245 IISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIK 324 (510)
T ss_dssp HGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHH
T ss_pred HHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHH
Confidence 88888888899999999977643321 12222333222211100 0000100000 0
Q ss_pred --hhhHHHHHHHHHHhhc----CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007829 377 --VKQEAKIVYLLECLQK----TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 377 --~~~~~k~~~ll~~l~~----~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVa 450 (588)
.....+...+.+.+.. .+.++||||+ ...++.+++.|...+..+..+||++++.+|..+++.|++|+.+||||
T Consensus 325 ~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 325 IITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 0011122223333322 3445666666 88999999999999889999999999999999999999999999999
Q ss_pred c-CccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEc
Q 007829 451 T-DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499 (588)
Q Consensus 451 T-~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~ 499 (588)
| +++++|+|+|++++||++++|+++..|+|++||+||.|+.|.++++++
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9 999999999999999999999999999999999999998875555544
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.1e-42 Score=367.52 Aligned_cols=290 Identities=16% Similarity=0.179 Sum_probs=204.4
Q ss_pred HHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCce
Q 007829 176 VVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLR 255 (588)
Q Consensus 176 ~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~ 255 (588)
.+++|+|++++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+ +
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----------~~~~~lil~Ptr~La~Q~~~~l~~~----------~-- 61 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----------RRLRTLVLAPTRVVLSEMKEAFHGL----------D-- 61 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTTTS----------C--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----------cCCeEEEEcchHHHHHHHHHHHhcC----------C--
Confidence 35689999999999999999999999987765 4678999999999999999887644 2
Q ss_pred EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH--------cccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh
Q 007829 256 TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA--------KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF 327 (588)
Q Consensus 256 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~--------~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~ 327 (588)
+....+.. -.|+||+++.+++. .....+.++++||+||||++ +.++...+..+....
T Consensus 62 v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~ 126 (440)
T 1yks_A 62 VKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRA 126 (440)
T ss_dssp EEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHH
T ss_pred eEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHh
Confidence 22111110 03667665543322 22345889999999999998 433333333333333
Q ss_pred -hhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCcccc
Q 007829 328 -KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKAD 406 (588)
Q Consensus 328 -~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~ 406 (588)
+..+|+++||||+++.+..++.. ..++..... . +.. .....++..+.+.++++||||+++..
T Consensus 127 ~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~~-----------~---~~~-~~~~~~~~~l~~~~~~~lVF~~s~~~ 189 (440)
T 1yks_A 127 RANESATILMTATPPGTSDEFPHS--NGEIEDVQT-----------D---IPS-EPWNTGHDWILADKRPTAWFLPSIRA 189 (440)
T ss_dssp HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC-----------C---CCS-SCCSSSCHHHHHCCSCEEEECSCHHH
T ss_pred ccCCceEEEEeCCCCchhhhhhhc--CCCeeEeee-----------c---cCh-HHHHHHHHHHHhcCCCEEEEeCCHHH
Confidence 35789999999998775433221 111111100 0 000 00111223344457899999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe------------------
Q 007829 407 VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN------------------ 468 (588)
Q Consensus 407 ~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~------------------ 468 (588)
++.+++.|...++.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 190 a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi 264 (440)
T 1yks_A 190 ANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAI 264 (440)
T ss_dssp HHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceee
Confidence 99999999999999999999 4688999999999999999999999999999 999996
Q ss_pred -cCCCCChhHHHHHhcccCCC-CCccEEEEEEc--CCCChhHHHHHHHHHHHhcCcCchH
Q 007829 469 -YDMPAEIENYVHRIGRTGRC-GKTGIATTFIN--KNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 469 -~~~p~s~~~y~QriGRagR~-g~~g~~~~~~~--~~~~~~~~~~l~~~l~~~~~~vp~~ 524 (588)
|+.|.+.++|+||+||+||. |+.|.|++|+. ...+...+..+...+......+|..
T Consensus 265 ~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 265 KGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred ccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 88999999999999999997 78999999973 2335667777777776666666654
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.2e-41 Score=365.75 Aligned_cols=278 Identities=22% Similarity=0.230 Sum_probs=214.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.++++|..+++.+..+++++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------------~g~~vLVl~PTReLA~Qia~~l~~~~- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------------QGYKVLVLNPSVAATLGFGAYMSKAH- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH--------------TTCCEEEEESCHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH--------------CCCeEEEEcchHHHHHHHHHHHHHHh-
Confidence 345566666666668899999999999999999998874 35689999999999999999887665
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHH
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~ 324 (588)
+..+...+|+.. +..+++|+|+||++| +....+.++++++||||||| +++++|...+..++
T Consensus 282 --------g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il 342 (666)
T 3o8b_A 282 --------GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVL 342 (666)
T ss_dssp --------SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHH
T ss_pred --------CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHH
Confidence 445666777754 245689999999998 45667788899999999995 55677888889999
Q ss_pred Hhhhhcce--EEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeC
Q 007829 325 DHFKAQRQ--TLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCE 402 (588)
Q Consensus 325 ~~~~~~~q--~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~ 402 (588)
+.++..+| ++++|||++..+. ...+....+...... . ..+...... .-....+++||||+
T Consensus 343 ~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~~---~---i~~~~~~~~------l~~~~~~~vLVFv~ 404 (666)
T 3o8b_A 343 DQAETAGARLVVLATATPPGSVT------VPHPNIEEVALSNTG---E---IPFYGKAIP------IEAIRGGRHLIFCH 404 (666)
T ss_dssp HHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECBSCS---S---EEETTEEEC------GGGSSSSEEEEECS
T ss_pred HhhhhcCCceEEEECCCCCcccc------cCCcceEEEeecccc---h---hHHHHhhhh------hhhccCCcEEEEeC
Confidence 99887777 6778999997421 112211111100000 0 011100000 01124679999999
Q ss_pred ccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----------ecC--
Q 007829 403 NKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----------NYD-- 470 (588)
Q Consensus 403 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI----------~~~-- 470 (588)
+++.++.+++.|...|+.+..+||++++.+ |.++..+|||||+++++|||++ +++|| |||
T Consensus 405 Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDyd 476 (666)
T 3o8b_A 405 SKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLD 476 (666)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCS
T ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccc
Confidence 999999999999999999999999999875 5567779999999999999997 99988 677
Q ss_pred ---------CCCChhHHHHHhcccCCCCCccEEEEEEcCCCCh
Q 007829 471 ---------MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSE 504 (588)
Q Consensus 471 ---------~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~ 504 (588)
+|.+.++|+||+||+|| |+.|. ++|+++.+..
T Consensus 477 P~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 477 PTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp SSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 99999 9999887543
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.1e-40 Score=367.97 Aligned_cols=314 Identities=16% Similarity=0.190 Sum_probs=221.6
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 157 KLKAKGIV-----QPTPIQV-----QGLPVVL------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 157 ~l~~~g~~-----~p~~~Q~-----~~i~~il------~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+|..+||. .||++|. ++||.++ +|+|++++||||||||++|++|++..+.. .++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----------~~~ 271 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----------KRL 271 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----------TTC
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCC
Confidence 45556776 8999999 9999988 89999999999999999999999987765 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~ 300 (588)
++|||+||++||.|+++.+..+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~----------~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l 333 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL----------PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNY 333 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS----------CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCC
T ss_pred cEEEEccHHHHHHHHHHHHhcC----------Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccc
Confidence 8999999999999999887754 221 11110000 00011223344445454444333 568899
Q ss_pred ceeeecCCcccccCCCHHHHHHHHHhhh-hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhh
Q 007829 301 RYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~ 379 (588)
++|||||||++ +..+...+..+...++ ..+|+++||||+++.+..+... ..|+...... ..
T Consensus 334 ~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~~--------------~~- 395 (673)
T 2wv9_A 334 NLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSSE--------------IP- 395 (673)
T ss_dssp SEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC--------------CC-
T ss_pred eEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEeee--------------cC-
Confidence 99999999998 2222223333333333 5789999999998764332221 1122111100 00
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007829 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlD 459 (588)
...+..++..+.+.++++||||+++..++.+++.|...++.+..+||. +|..+++.|++|+.+|||||+++++|||
T Consensus 396 ~~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GID 471 (673)
T 2wv9_A 396 DRAWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGAN 471 (673)
T ss_dssp SSCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhccee
Confidence 001111233444567899999999999999999999999999999993 7899999999999999999999999999
Q ss_pred CCCcceEEe--------------------cCCCCChhHHHHHhcccCCC-CCccEEEEEEc--CCCChhHHHHHHHHHHH
Q 007829 460 FPDIQHVIN--------------------YDMPAEIENYVHRIGRTGRC-GKTGIATTFIN--KNQSETTLLDLKHLLQE 516 (588)
Q Consensus 460 ip~v~~VI~--------------------~~~p~s~~~y~QriGRagR~-g~~g~~~~~~~--~~~~~~~~~~l~~~l~~ 516 (588)
+| +++||+ |++|.+.++|+||+||+||. |+.|.|++|+. ...+...+..+...+..
T Consensus 472 ip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 472 FG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp CC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred eC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 99 999998 67899999999999999999 89999999974 22355556666555443
Q ss_pred hcCcC
Q 007829 517 AKQRI 521 (588)
Q Consensus 517 ~~~~v 521 (588)
....+
T Consensus 551 ~~~~~ 555 (673)
T 2wv9_A 551 DNIHL 555 (673)
T ss_dssp HTSCB
T ss_pred hhccC
Confidence 33333
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.5e-39 Score=367.62 Aligned_cols=334 Identities=17% Similarity=0.187 Sum_probs=245.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007829 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
+.++.+|.++++++.+.+.+...+ ..|+++|+++|+.++ .+++++++||||||||+ ++|++...... ..+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~------~~~ 138 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM------PHL 138 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC------GGG
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc------ccC
Confidence 347789999999999999999988 789999999999988 45689999999999997 56666322110 012
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
.++.++|++|+++|+.|+.+.+...+... .+..+......... ...+.+|+|+|||++...+... ..+
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~-----v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l 206 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVK-----LGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDL 206 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCC-----BTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTC
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCc-----hhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccc
Confidence 36789999999999999998776654210 01222211111110 1135799999999998877664 458
Q ss_pred CCcceeeecCCcc-cccCCCH-HHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEee
Q 007829 298 DNCRYLTLDEADR-LVDLGFE-DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 298 ~~~~~lIvDEah~-l~~~~~~-~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~ 375 (588)
.++++|||||+|. +++..+. ..+..+.. ..+..|+++||||++.. .+. .++.....+.+.... ..+.+.+.
T Consensus 207 ~~~~~lIlDEah~R~ld~d~~~~~l~~l~~-~~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~---~pv~~~~~ 279 (773)
T 2xau_A 207 SRYSCIILDEAHERTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT---YPVELYYT 279 (773)
T ss_dssp TTEEEEEECSGGGCCHHHHHHHHHHHHHHH-HCTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC---CCEEEECC
T ss_pred cCCCEEEecCccccccchHHHHHHHHHHHH-hCCCceEEEEeccccHH--HHH-HHhcCCCcccccCcc---cceEEEEe
Confidence 8999999999995 5553211 22333332 23567999999999753 343 444444444433221 23333332
Q ss_pred ehhhH----HHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHH-----------cCCcEEEEeCCCCHHHHHHHHHH
Q 007829 376 YVKQE----AKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLL-----------KGVEAVAVHGGKDQEEREYAISS 439 (588)
Q Consensus 376 ~~~~~----~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~-----------~g~~~~~ihg~~~~~~r~~~~~~ 439 (588)
..... ..+..++..+.. .++++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 22222 223334443333 577999999999999999999975 57889999999999999999999
Q ss_pred Hh-----cCCcEEEEEcCccccCCCCCCcceEEecCC------------------CCChhHHHHHhcccCCCCCccEEEE
Q 007829 440 FK-----AGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PAEIENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 440 F~-----~g~~~VLVaT~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~QriGRagR~g~~g~~~~ 496 (588)
|. +|..+|||||+++++|||+|++++||++++ |.|..+|+||+|||||. ..|.|+.
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~ 438 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 438 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEE
Confidence 99 999999999999999999999999999988 88999999999999999 8999999
Q ss_pred EEcCC
Q 007829 497 FINKN 501 (588)
Q Consensus 497 ~~~~~ 501 (588)
|+++.
T Consensus 439 l~~~~ 443 (773)
T 2xau_A 439 LYTEE 443 (773)
T ss_dssp SSCHH
T ss_pred EecHH
Confidence 99754
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.5e-39 Score=348.42 Aligned_cols=293 Identities=23% Similarity=0.215 Sum_probs=220.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+|+|.++++.++.++++++++|||+|||++|++++... +.++|||||+++|+.||.+.+.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 47999999999999999999999999999999999987743 457999999999999999999885
Q ss_pred hcccccCCCCce-EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 244 TPMRDAGYPDLR-TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 244 ~~~~~~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
+++ +..++|+... ..+|+|+||+.+...+..- ...+++|||||||++.+.+|..
T Consensus 157 ---------~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~---- 211 (472)
T 2fwr_A 157 ---------GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ---- 211 (472)
T ss_dssp ---------CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----
T ss_pred ---------CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----
Confidence 567 7777777543 3799999999987665421 2458999999999999887643
Q ss_pred HHHhhhhcceEEEEeeccch-------------------HHHHHHHHhccCCeE--EEecCCCC----------------
Q 007829 323 VFDHFKAQRQTLLFSATMPT-------------------KIQNFARSALVKPVT--VNVGRAGA---------------- 365 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~-------------------~i~~~~~~~l~~p~~--i~~~~~~~---------------- 365 (588)
++..+ ...+++++|||++. ...++...++..+.. +.+.....
T Consensus 212 ~~~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (472)
T 2fwr_A 212 IAQMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFL 290 (472)
T ss_dssp HHHTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCS
T ss_pred HHHhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444 35679999999973 122332222222211 11110000
Q ss_pred --------cccceEEEe---------------------eehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHH
Q 007829 366 --------ANLDVIQEV---------------------EYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 366 --------~~~~v~~~~---------------------~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~ 415 (588)
....+.+.+ .......+...+.+.+.. .+.++||||+++..++.+++.|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l- 369 (472)
T 2fwr_A 291 RARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF- 369 (472)
T ss_dssp SSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-
T ss_pred HhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh-
Confidence 000000000 001123345555555554 4679999999999999999988
Q ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCc---c
Q 007829 416 LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT---G 492 (588)
Q Consensus 416 ~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~---g 492 (588)
.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|+||+||+||.|+. .
T Consensus 370 ----~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 370 ----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp ----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred ----CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceE
Confidence 356799999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred EEEEEEcCCC
Q 007829 493 IATTFINKNQ 502 (588)
Q Consensus 493 ~~~~~~~~~~ 502 (588)
.++.|++.+.
T Consensus 446 ~i~~lv~~~t 455 (472)
T 2fwr_A 446 VLYELISRGT 455 (472)
T ss_dssp EEEEEEECSC
T ss_pred EEEEEEeCCC
Confidence 5555676653
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.5e-39 Score=347.19 Aligned_cols=276 Identities=17% Similarity=0.179 Sum_probs=199.2
Q ss_pred HHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccC
Q 007829 171 VQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAG 250 (588)
Q Consensus 171 ~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~ 250 (588)
......+.++++++++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~g~-------- 73 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----------QRLRTAVLAPTRVVAAEMAEALRGL-------- 73 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEECSHHHHHHHHHHTTTS--------
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----------CCCcEEEECchHHHHHHHHHHhcCc--------
Confidence 3334445678999999999999999999999988765 4678999999999999999887622
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCccc-----ccCCCHHHHHHHHH
Q 007829 251 YPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL-----VDLGFEDDIREVFD 325 (588)
Q Consensus 251 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l-----~~~~~~~~i~~i~~ 325 (588)
.+....+..... -..+.-+.++|.+.+...+... ..++++++|||||||++ ..++|.....
T Consensus 74 ----~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~---- 139 (459)
T 2z83_A 74 ----PVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV---- 139 (459)
T ss_dssp ----CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----
T ss_pred ----eEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh----
Confidence 122111111100 1234567788988887666543 55889999999999984 3333322211
Q ss_pred hhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccc
Q 007829 326 HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKA 405 (588)
Q Consensus 326 ~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~ 405 (588)
.....|+++||||++..+..+... ..|+......... .. ...++..+.+..+++||||+++.
T Consensus 140 -~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~~~~--~~-------------~~~~~~~l~~~~~~~LVF~~s~~ 201 (459)
T 2z83_A 140 -ELGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDEIPD--RA-------------WSSGYEWITEYAGKTVWFVASVK 201 (459)
T ss_dssp -HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECCCCS--SC-------------CSSCCHHHHHCCSCEEEECSCHH
T ss_pred -ccCCccEEEEEcCCCcchhhhccC--CCCeEEecccCCc--ch-------------hHHHHHHHHhcCCCEEEEeCChH
Confidence 135789999999999764333221 2333221110000 00 00112233445789999999999
Q ss_pred cHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe-----------------
Q 007829 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----------------- 468 (588)
Q Consensus 406 ~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~----------------- 468 (588)
.++.+++.|...|+.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 9999999999999999999995 6788999999999999999999999999999 99999
Q ss_pred ---cCCCCChhHHHHHhcccCCCCC-ccEEEEEEcCC
Q 007829 469 ---YDMPAEIENYVHRIGRTGRCGK-TGIATTFINKN 501 (588)
Q Consensus 469 ---~~~p~s~~~y~QriGRagR~g~-~g~~~~~~~~~ 501 (588)
|++|.|..+|+||+|||||.|. .|.+++|+...
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999875
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-37 Score=307.98 Aligned_cols=239 Identities=38% Similarity=0.650 Sum_probs=200.7
Q ss_pred cCeEeecCCCCC--CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHH
Q 007829 129 WHIIVDGEDIPP--PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAM 206 (588)
Q Consensus 129 ~~i~v~g~~~p~--p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~ 206 (588)
..+.+.|...|. ++.+|+++++++.++++|...||..|+|+|.++|+.+++|+|+++++|||||||++|++|++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 346678888887 899999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhcccC-CCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHH
Q 007829 207 HEEMMM-PIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGR 285 (588)
Q Consensus 207 ~~~~~~-~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~ 285 (588)
...... ......++++|||+||++|+.|+++.+.+++... ++++..++||.+...+...+..+++|+|+||++
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT------PLRSCVVYGGADTHSQIREVQMGCHLLVATPGR 160 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS------SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHhCCCCCEEEECHHH
Confidence 532110 0112346799999999999999999999987644 688899999998888888888889999999999
Q ss_pred HHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh--hh--cceEEEEeeccchHHHHHHHHhccCCeEEEec
Q 007829 286 LKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 286 l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~--~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
|.+++......+..+++||+||||++.+++|...+..++..+ +. .+|+++||||+++.+..+++.++.+|+.+.++
T Consensus 161 l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 161 LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp HHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 999999888889999999999999999999999999999853 33 67999999999999999999999999999888
Q ss_pred CCCCcccceEEE
Q 007829 362 RAGAANLDVIQE 373 (588)
Q Consensus 362 ~~~~~~~~v~~~ 373 (588)
..+....++.|.
T Consensus 241 ~~~~~~~~i~q~ 252 (253)
T 1wrb_A 241 RVGSTSDSIKQE 252 (253)
T ss_dssp ------------
T ss_pred CCCCCcCCceec
Confidence 776655555543
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=300.72 Aligned_cols=217 Identities=36% Similarity=0.606 Sum_probs=188.7
Q ss_pred cCCCCCCCCCCCC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCC
Q 007829 135 GEDIPPPIKNFKD-MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMP 213 (588)
Q Consensus 135 g~~~p~p~~~f~~-~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~ 213 (588)
+..+|.|+.+|.+ +++++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+..... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~--~ 88 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI--S 88 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc--h
Confidence 4558999999999 799999999999999999999999999999999999999999999999999999987754211 1
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc
Q 007829 214 IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 214 ~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.....++++||++||++|+.|+++.+.++.. .++++..++||.....+...+..+++|+|+||++|.+++...
T Consensus 89 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~ 161 (228)
T 3iuy_A 89 REQRNGPGMLVLTPTRELALHVEAECSKYSY-------KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN 161 (228)
T ss_dssp ----CCCSEEEECSSHHHHHHHHHHHHHHCC-------TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred hhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-------cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 1123678899999999999999999999852 378899999999888888888899999999999999999888
Q ss_pred cCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEe
Q 007829 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~ 360 (588)
...+.++++||+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|+.+.+
T Consensus 162 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 162 SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 8889999999999999999999999999999999999999999999999999999999999987753
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.1e-37 Score=329.59 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=195.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|+++++++|||||||++|++|++..+.. .+++++|++||++||.|+++.+. ++.+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----------~g~~~lvl~Pt~~La~Q~~~~~~------------~~~v~~ 58 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----------KRLRTVILAPTRVVASEMYEALR------------GEPIRY 58 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT------------TSCEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCCEEEECcHHHHHHHHHHHhC------------CCeEEE
Confidence 47899999999999999999999976654 46789999999999999887664 234444
Q ss_pred EEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhh-hhcceEEEEe
Q 007829 259 CIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-KAQRQTLLFS 337 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~-~~~~q~l~~S 337 (588)
..|+... .-..+.-+.+.|.+.+...+.. ...+.++++||+||||++ +.++......+.... +..+|+++||
T Consensus 59 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~S 131 (431)
T 2v6i_A 59 MTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMT 131 (431)
T ss_dssp C--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred EecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEe
Confidence 4443221 1112456778899988766665 556899999999999997 433333333333332 4578999999
Q ss_pred eccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc
Q 007829 338 ATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK 417 (588)
Q Consensus 338 AT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~ 417 (588)
||+++.+..+... ..|+...... .. ...+..++..+.+.++++||||+++..++.+++.|...
T Consensus 132 AT~~~~~~~~~~~--~~~i~~~~~~--------------~~-~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~ 194 (431)
T 2v6i_A 132 ATPPGTTEAFPPS--NSPIIDEETR--------------IP-DKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKA 194 (431)
T ss_dssp SSCTTCCCSSCCC--SSCCEEEECC--------------CC-SSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCCcchhhhcCC--CCceeecccc--------------CC-HHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 9999753322111 1111111000 00 00111223444555779999999999999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcce-----------------EEecCCCCChhHHHH
Q 007829 418 GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH-----------------VINYDMPAEIENYVH 480 (588)
Q Consensus 418 g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~-----------------VI~~~~p~s~~~y~Q 480 (588)
++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+|
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Q 269 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQ 269 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHH
Confidence 9999999997 578899999999999999999999999999 554 678899999999999
Q ss_pred HhcccCCCCC-ccEEEEEEc
Q 007829 481 RIGRTGRCGK-TGIATTFIN 499 (588)
Q Consensus 481 riGRagR~g~-~g~~~~~~~ 499 (588)
|+||+||.|. .|.+++|..
T Consensus 270 r~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 270 RRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp HHTTSSCCTTCCCCEEEECS
T ss_pred hhhccCCCCCCCCeEEEEcC
Confidence 9999999985 555566553
No 54
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=300.56 Aligned_cols=230 Identities=29% Similarity=0.540 Sum_probs=197.5
Q ss_pred HHHHHHHhcCeEeecCCCCCCCCCCCCC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHH
Q 007829 121 ACDLIRKQWHIIVDGEDIPPPIKNFKDM----RFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 121 ~~~~~r~~~~i~v~g~~~p~p~~~f~~~----~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~ 196 (588)
+++.+|+++.+.+.|.++|.|+.+|+++ ++++.+++.|.+.||..|+|+|.++++.+++|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677899999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH-HHHhcC
Q 007829 197 FVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL-EVVKRG 275 (588)
Q Consensus 197 ~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-~~l~~~ 275 (588)
|++|++..+... ...++++||++||++|+.|+++.+.+++... ++++..++|+....... .....+
T Consensus 83 ~~l~~l~~l~~~-------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (245)
T 3dkp_A 83 FSIPILMQLKQP-------ANKGFRALIISPTRELASQIHRELIKISEGT------GFRIHMIHKAAVAAKKFGPKSSKK 149 (245)
T ss_dssp HHHHHHHHHCSC-------CSSSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEECCCHHHHHHTTTSTTSCCC
T ss_pred HHHHHHHHHhhc-------ccCCceEEEEeCCHHHHHHHHHHHHHHhccc------CceEEEEecCccHHHHhhhhhcCC
Confidence 999999877431 2357789999999999999999999997654 67777777654333221 112346
Q ss_pred CcEEEeChHHHHHHHHcc--cCCCCCcceeeecCCccccc---CCCHHHHHHHHHhh-hhcceEEEEeeccchHHHHHHH
Q 007829 276 VHIVVATPGRLKDMLAKK--KMNLDNCRYLTLDEADRLVD---LGFEDDIREVFDHF-KAQRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 276 ~~IvV~Tp~~l~~~l~~~--~~~l~~~~~lIvDEah~l~~---~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i~~~~~ 349 (588)
++|+|+||++|.+++... ...+.++++||+||||++.+ .+|...+..++..+ +...|+++||||+|+.+.++++
T Consensus 150 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~ 229 (245)
T 3dkp_A 150 FDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK 229 (245)
T ss_dssp CCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHH
Confidence 899999999999999876 46788999999999999998 46888888887765 3568999999999999999999
Q ss_pred HhccCCeEEEecCC
Q 007829 350 SALVKPVTVNVGRA 363 (588)
Q Consensus 350 ~~l~~p~~i~~~~~ 363 (588)
.++.+|+.+.++..
T Consensus 230 ~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 230 LNLDNVISVSIGAR 243 (245)
T ss_dssp HHSSSCEEEEECC-
T ss_pred HhCCCCEEEEeCCC
Confidence 99999999988754
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=306.75 Aligned_cols=216 Identities=30% Similarity=0.481 Sum_probs=189.3
Q ss_pred CeEeecCCCCCC---CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHH
Q 007829 130 HIIVDGEDIPPP---IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 130 ~i~v~g~~~p~p---~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvi~~a~TGsGKTl~~~lp~l~~ 204 (588)
.+.+.+.+.+.| +.+|+++++++.+++.|..+||..||++|.++||.++.| +|++++||||||||++|++|++..
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 455666665554 578999999999999999999999999999999999987 999999999999999999999987
Q ss_pred HHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChH
Q 007829 205 AMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPG 284 (588)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~ 284 (588)
+... ..++++|||+||++||.|+++.+..++... +++.+.+++|+....... ..+++|+|+||+
T Consensus 156 l~~~--------~~~~~~lil~PtreLa~Q~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~ 219 (300)
T 3fmo_B 156 VEPA--------NKYPQCLCLSPTYELALQTGKVIEQMGKFY-----PELKLAYAVRGNKLERGQ---KISEQIVIGTPG 219 (300)
T ss_dssp CCTT--------SCSCCEEEECSSHHHHHHHHHHHHHHTTTS-----TTCCEEEESTTCCCCTTC---CCCCSEEEECHH
T ss_pred hhcc--------CCCceEEEEcCcHHHHHHHHHHHHHHHhhC-----CCcEEEEEeCCccHhhhh---cCCCCEEEECHH
Confidence 6432 357799999999999999999999987543 468888888887654332 456899999999
Q ss_pred HHHHHHHc-ccCCCCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEec
Q 007829 285 RLKDMLAK-KKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 285 ~l~~~l~~-~~~~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
+|.+++.+ +.+.++++++|||||||+|++ .+|...+..++..++..+|+++||||+++.+..+++.++.+|+.+.+.
T Consensus 220 ~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 220 TVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999976 567789999999999999998 789999999999999999999999999999999999999999988764
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2e-36 Score=296.42 Aligned_cols=214 Identities=31% Similarity=0.527 Sum_probs=179.1
Q ss_pred ecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCC
Q 007829 134 DGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMP 213 (588)
Q Consensus 134 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~ 213 (588)
...+.|+++.+|+++++++.++++|.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----- 95 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----- 95 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 345577889999999999999999999999999999999999999999999999999999999999999875431
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcC-CcEEEeChHHHHHHHHc
Q 007829 214 IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRG-VHIVVATPGRLKDMLAK 292 (588)
Q Consensus 214 ~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~l~~~l~~ 292 (588)
..++++||++||++|+.|+++.+.+++... ++.+..++||.....+...+..+ ++|+|+||++|.+++..
T Consensus 96 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~ 166 (237)
T 3bor_A 96 ---FKETQALVLAPTRELAQQIQKVILALGDYM------GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR 166 (237)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTT------TCCEEEECC-------------CCCSEEEECHHHHHHHHHT
T ss_pred ---CCCceEEEEECcHHHHHHHHHHHHHHhhhc------CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh
Confidence 256789999999999999999999997644 67888889998877777666665 89999999999999988
Q ss_pred ccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEec
Q 007829 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 293 ~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
+...+..+++||+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|+.+.++
T Consensus 167 ~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 167 RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 888889999999999999999999999999999999999999999999999999999999999887654
No 57
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.1e-36 Score=338.00 Aligned_cols=303 Identities=17% Similarity=0.189 Sum_probs=188.8
Q ss_pred CCcHHHHHHHHHHhc----C-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH-HH
Q 007829 165 QPTPIQVQGLPVVLS----G-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY-EV 238 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~----g-~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~-~~ 238 (588)
.|+|+|.++++.++. | ++++++++||||||++++..+ ..++...+.. .....++++|||+||++|+.|+. +.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~-~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNR-TGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCS-SCSSSCCCEEEEEC-----------C
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhccccc-ccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 699999999999885 4 669999999999999965544 4444321100 00125789999999999999999 77
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc----ccCCCCCcceeeecCCcccccC
Q 007829 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK----KKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~----~~~~l~~~~~lIvDEah~l~~~ 314 (588)
+..+. ..+..+.++. ...+.+|+|+||++|...+.. ..+....+++||+||||++...
T Consensus 256 ~~~~~----------~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 256 FTPFG----------DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR 317 (590)
T ss_dssp CTTTC----------SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----
T ss_pred HHhcc----------hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc
Confidence 76653 2333333321 224579999999999877642 3455678999999999999765
Q ss_pred CCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeE-----------------E-EecCCCC----cc-----
Q 007829 315 GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVT-----------------V-NVGRAGA----AN----- 367 (588)
Q Consensus 315 ~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~-----------------i-~~~~~~~----~~----- 367 (588)
+ ...++.++..++. .++++||||+..........++..++. + .+..... ..
T Consensus 318 ~-~~~~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 318 D-NSNWREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp -----CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred c-hHHHHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 3 2566777777763 679999999874332222222222221 1 1100000 00
Q ss_pred ---cceEEEeee--------hhhHHHHH----HHHHHhh--cCCCCEEEEeCccccHHHHHHHHHHcCCc--------EE
Q 007829 368 ---LDVIQEVEY--------VKQEAKIV----YLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLKGVE--------AV 422 (588)
Q Consensus 368 ---~~v~~~~~~--------~~~~~k~~----~ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~g~~--------~~ 422 (588)
........+ +....+.. .+.+.+. ...+++||||+++..|+.+++.|...+.. +.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 000000000 00011111 2222233 23578999999999999999999876543 77
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCcE---EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCC
Q 007829 423 AVHGGKDQEEREYAISSFKAGKKD---VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 423 ~ihg~~~~~~r~~~~~~F~~g~~~---VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~ 490 (588)
.+||.+++ +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+|+..|+||+||+||.|.
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 88998764 799999999998866 89999999999999999999999999999999999999999875
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=294.62 Aligned_cols=207 Identities=38% Similarity=0.649 Sum_probs=191.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+..+|+++++++.+.++|...||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--------~~~~ 112 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--------PQRL 112 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------CCSS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--------CCCc
Confidence 56789999999999999999999999999999999999999999999999999999999999887663 2467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCCCCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-~~~~l~~ 299 (588)
++||++||++|+.|+++.+.+++... ++++..++||.....+...+..+++|+|+||++|.+.+.. ..+.+..
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI------GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG------TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC------CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 89999999999999999999998765 7889999999988888888888999999999999998886 5567899
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEec
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
+++||+||||++.+++|...+..++..++..+|+++||||+++.+.++++.++.+|+.+.++
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999899999999999999999999999999988653
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.7e-36 Score=291.32 Aligned_cols=212 Identities=30% Similarity=0.495 Sum_probs=184.5
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCC
Q 007829 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPI 214 (588)
Q Consensus 135 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~ 214 (588)
+...|++..+|+++++++.+.+.|.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------ 89 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------ 89 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------
Confidence 45677888999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc
Q 007829 215 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 215 ~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
..++++||++||++|+.|+++.+.++.... +++++..++||.....+...+ .+++|+|+||++|.+++....
T Consensus 90 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 90 --NLSTQILILAPTREIAVQIHSVITAIGIKM-----EGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTS-----TTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS
T ss_pred --CCCceEEEEeCCHHHHHHHHHHHHHHhccc-----CCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC
Confidence 356799999999999999999999986532 378899999998877665554 468999999999999998888
Q ss_pred CCCCCcceeeecCCcccccCC-CHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEe
Q 007829 295 MNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360 (588)
Q Consensus 295 ~~l~~~~~lIvDEah~l~~~~-~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~ 360 (588)
+.+.++++||+||||++.++| |...+..+++.++..+|+++||||+|+.+.+++..++.+|+.+.+
T Consensus 162 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 162 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 888999999999999999998 999999999999989999999999999999999999999987754
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=289.34 Aligned_cols=227 Identities=34% Similarity=0.532 Sum_probs=194.8
Q ss_pred HHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHH
Q 007829 119 KKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 119 ~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~ 198 (588)
+++++.+++.+.. ..++++.+|+++++++.+.+.|.+.||..|+++|.++++.+++|+|+++++|||||||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4455566666532 12456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcE
Q 007829 199 LPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHI 278 (588)
Q Consensus 199 lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~I 278 (588)
+|++..+.... .....++++||++||++|+.|+++.+.+++... ++++..++|+.+...+...+ .+++|
T Consensus 81 ~~~l~~l~~~~----~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~-~~~~i 149 (236)
T 2pl3_A 81 VPVLEALYRLQ----WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH------DFSAGLIIGGKDLKHEAERI-NNINI 149 (236)
T ss_dssp HHHHHHHHHTT----CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS------SCCEEEECCC--CHHHHHHH-TTCSE
T ss_pred HHHHHHHHhhc----ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC------CeeEEEEECCCCHHHHHHhC-CCCCE
Confidence 99998876532 112357889999999999999999999987543 68899999998877665555 46899
Q ss_pred EEeChHHHHHHHHcc-cCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeE
Q 007829 279 VVATPGRLKDMLAKK-KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVT 357 (588)
Q Consensus 279 vV~Tp~~l~~~l~~~-~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~ 357 (588)
+|+||++|.+.+... .+.+.++++||+||||++.+++|...+..++..++..+|+++||||+++.+.++++.++.+|..
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 999999999888764 5678899999999999999999999999999999999999999999999999999999999988
Q ss_pred EEec
Q 007829 358 VNVG 361 (588)
Q Consensus 358 i~~~ 361 (588)
+.++
T Consensus 230 i~~~ 233 (236)
T 2pl3_A 230 VWVH 233 (236)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8764
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.8e-36 Score=331.33 Aligned_cols=279 Identities=18% Similarity=0.167 Sum_probs=208.6
Q ss_pred HHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccc
Q 007829 169 IQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRD 248 (588)
Q Consensus 169 ~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~ 248 (588)
.|.......+.|++++++||||||||+ +++..+.. .+.++|++|||+||.|+++.+.+.
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~-----------~~~gl~l~PtR~LA~Qi~~~l~~~------ 202 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFS-----------AKSGVYCGPLKLLAHEIFEKSNAA------ 202 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHH-----------SSSEEEEESSHHHHHHHHHHHHHT------
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHh-----------cCCeEEEeCHHHHHHHHHHHHHhc------
Confidence 333444556799999999999999997 34444433 234599999999999999998876
Q ss_pred cCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhh
Q 007829 249 AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK 328 (588)
Q Consensus 249 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~ 328 (588)
++++.+++|+...-.. .-.+..+++++|++.+. ....+++|||||||++.+.+|+..+..++..++
T Consensus 203 ----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~ 268 (677)
T 3rc3_A 203 ----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 268 (677)
T ss_dssp ----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC
T ss_pred ----CCcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC
Confidence 6778888888554100 00012567777764331 246789999999999999999999999988887
Q ss_pred -hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccH
Q 007829 329 -AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADV 407 (588)
Q Consensus 329 -~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~ 407 (588)
...+++++|||.+ .+..+.... ...+.+..... .......... +..+.....+.||||+++..+
T Consensus 269 ~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r---~~~l~~~~~~----------l~~l~~~~~g~iIf~~s~~~i 333 (677)
T 3rc3_A 269 AEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKR---LTPISVLDHA----------LESLDNLRPGDCIVCFSKNDI 333 (677)
T ss_dssp EEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCC---SSCEEECSSC----------CCSGGGCCTTEEEECSSHHHH
T ss_pred ccceEEEeccchHH-HHHHHHHhc-CCceEEEEeee---cchHHHHHHH----------HHHHHhcCCCCEEEEcCHHHH
Confidence 6789999999953 344444433 33333322111 0011000000 111223345679999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCcEEEEEcCccccCCCCCCcceEEecCC--------------
Q 007829 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA--GKKDVLVATDVASKGLDFPDIQHVINYDM-------------- 471 (588)
Q Consensus 408 ~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~--g~~~VLVaT~~~~~GlDip~v~~VI~~~~-------------- 471 (588)
+.+++.|...++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+ ++++||++++
T Consensus 334 e~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~ 412 (677)
T 3rc3_A 334 YSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELE 412 (677)
T ss_dssp HHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------C
T ss_pred HHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccc
Confidence 99999999999999999999999999999999999 899999999999999999 9999999999
Q ss_pred CCChhHHHHHhcccCCCCCc---cEEEEEE
Q 007829 472 PAEIENYVHRIGRTGRCGKT---GIATTFI 498 (588)
Q Consensus 472 p~s~~~y~QriGRagR~g~~---g~~~~~~ 498 (588)
|.+..+|+||+|||||.|.. |.++.+.
T Consensus 413 p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 413 PITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp BCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred cCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 77999999999999999965 5555543
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=7.2e-36 Score=288.80 Aligned_cols=212 Identities=30% Similarity=0.495 Sum_probs=186.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
|..+|+++++++.+.++|.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--------~~~~ 73 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--------RAEV 73 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--------SCSC
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--------cCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999876432 3467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~ 300 (588)
++||++||++|+.|+++.+.++....... .++++..++||.+...+...+..+++|+|+||++|.+++..+...+..+
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 151 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKD--RMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTA 151 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGG--GCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccc--cceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcc
Confidence 89999999999999999999987643211 1577888899887766655555678999999999999998888888999
Q ss_pred ceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecC
Q 007829 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362 (588)
Q Consensus 301 ~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~ 362 (588)
++||+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.+..
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999999999998999999999999999999999999998876643
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.3e-35 Score=281.19 Aligned_cols=203 Identities=31% Similarity=0.554 Sum_probs=185.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007829 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+... ..++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--------~~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--------KDNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--------SCSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--------CCCeeE
Confidence 479999999999999999999999999999999999999999999999999999999999765331 356789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007829 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~ 302 (588)
||++||++|+.|+++.+.++.... +++++..++|+.....+...+..+++|+|+||++|.+.+.++...+.++++
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 149 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHM-----GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQM 149 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTS-----SSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhc-----CCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCE
Confidence 999999999999999999987542 367889999999888887777788999999999999999888888999999
Q ss_pred eeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEE
Q 007829 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTV 358 (588)
Q Consensus 303 lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i 358 (588)
||+||||++.+.+|...+..++..++..+|+++||||+|+.+.++++.++.+|+.+
T Consensus 150 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 150 IVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999998899999999999999999999999999765
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.5e-35 Score=285.93 Aligned_cols=212 Identities=29% Similarity=0.522 Sum_probs=182.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007829 136 EDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 136 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
...|+++.+|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------- 79 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------- 79 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-------
Confidence 3467788999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC
Q 007829 216 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 216 ~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~ 295 (588)
..++++||++||++|+.|+++.+.+++... ++++..++|+.....+...+.. ++|+|+||++|.+.+.....
T Consensus 80 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~ 151 (224)
T 1qde_A 80 -VKAPQALMLAPTRELALQIQKVVMALAFHM------DIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRF 151 (224)
T ss_dssp -CCSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSS
T ss_pred -CCCceEEEEECCHHHHHHHHHHHHHHhccc------CceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCc
Confidence 356799999999999999999999987644 7888999998877666555544 89999999999999988888
Q ss_pred CCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEecC
Q 007829 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~ 362 (588)
.+.++++||+||||++.+++|...+..++..++...|+++||||+++.+.++++.++.+|+.+.+..
T Consensus 152 ~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 152 RTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred chhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 8999999999999999999999999999999999999999999999999999999999998887654
No 65
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.8e-35 Score=341.23 Aligned_cols=317 Identities=19% Similarity=0.231 Sum_probs=220.7
Q ss_pred CCCcHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~--g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+.. +...++|||||+ .|+.||.+.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------GAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------SSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------CCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 4799999999999885 4588999999999999987777655433 234579999999 999999999977
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHH--HHhcCCcEEEeChHHHHHHHHc-ccCCCCCcceeeecCCcccccCCCHH
Q 007829 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLE--VVKRGVHIVVATPGRLKDMLAK-KKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IvV~Tp~~l~~~l~~-~~~~l~~~~~lIvDEah~l~~~~~~~ 318 (588)
.+ ++++..+.|+........ ......+|+|+|++.+...... ..+....+++|||||||++.+.+...
T Consensus 222 ~f---------~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~ 292 (968)
T 3dmq_A 222 RF---------NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAP 292 (968)
T ss_dssp HS---------CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBC
T ss_pred Hh---------CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcc
Confidence 65 455555554322111100 0112469999999877432111 12335578999999999998655321
Q ss_pred -HHHHHHHhh-hhcceEEEEeeccch----HHHHHH----------------------------HHhcc-----------
Q 007829 319 -DIREVFDHF-KAQRQTLLFSATMPT----KIQNFA----------------------------RSALV----------- 353 (588)
Q Consensus 319 -~i~~i~~~~-~~~~q~l~~SAT~~~----~i~~~~----------------------------~~~l~----------- 353 (588)
.....+..+ ....+++++|||+.. .+..++ ...+.
T Consensus 293 s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 372 (968)
T 3dmq_A 293 SREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNM 372 (968)
T ss_dssp CHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTS
T ss_pred hHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 112233333 245569999999842 000000 00000
Q ss_pred -----------------------------------------CCeEEEecCCCCccc---ceEE-----------------
Q 007829 354 -----------------------------------------KPVTVNVGRAGAANL---DVIQ----------------- 372 (588)
Q Consensus 354 -----------------------------------------~p~~i~~~~~~~~~~---~v~~----------------- 372 (588)
..+.+...+...... ....
T Consensus 373 L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~ 452 (968)
T 3dmq_A 373 LGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSG 452 (968)
T ss_dssp STTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_pred HHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHh
Confidence 000000000000000 0000
Q ss_pred ----------------------------EeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHH-cCCcEE
Q 007829 373 ----------------------------EVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLL-KGVEAV 422 (588)
Q Consensus 373 ----------------------------~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~-~g~~~~ 422 (588)
...+.....|...+.+.+.. .+.++||||+++..++.++..|.. .|+.+.
T Consensus 453 ~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~ 532 (968)
T 3dmq_A 453 IMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAA 532 (968)
T ss_dssp HTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEE
T ss_pred hhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEE
Confidence 00122334566777777765 467999999999999999999994 599999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCC--cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEc
Q 007829 423 AVHGGKDQEEREYAISSFKAGK--KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499 (588)
Q Consensus 423 ~ihg~~~~~~r~~~~~~F~~g~--~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~ 499 (588)
.+||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.++++..
T Consensus 533 ~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 533 VFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999999999999998 9999999999999999999999999999999999999999999999996655543
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.5e-34 Score=276.68 Aligned_cols=204 Identities=38% Similarity=0.631 Sum_probs=186.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007829 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+|+++++++.+.+.|.+.|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ....++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-----ERGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-----CTTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCcEE
Confidence 689999999999999999999999999999999999999999999999999999999998764311 123578999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007829 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~l 303 (588)
|++||++|+.|+++.+.+++. .+++..++|+.....+...+..+++|+|+||+++.+++..+...+..+++|
T Consensus 77 il~P~~~L~~q~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAP--------HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCT--------TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEE
T ss_pred EEECCHHHHHHHHHHHHHHhh--------cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEE
Confidence 999999999999999999864 477888999988888878888889999999999999998888889999999
Q ss_pred eecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEEe
Q 007829 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360 (588)
Q Consensus 304 IvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~ 360 (588)
|+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|+.+.+
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999989999999999999999999999999988765
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=288.44 Aligned_cols=204 Identities=36% Similarity=0.602 Sum_probs=180.7
Q ss_pred CCCCCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007829 143 KNFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 143 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
.+|.+++ +++.+++.|.+.||..|+++|.++++.++.|+|++++||||||||++|++|++..+.... .....++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~ 127 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR----FMPRNGT 127 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----CCGGGCC
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcc----ccccCCc
Confidence 3566666 999999999999999999999999999999999999999999999999999998877532 1123577
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-~~~l~~ 299 (588)
++|||+||++||.|+++.+.+++... ++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.+
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHH------VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTC------CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhc------CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCccccc
Confidence 89999999999999999999998654 78889999999988888888888999999999999888765 467899
Q ss_pred cceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCe
Q 007829 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 300 ~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
+++||+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.++.
T Consensus 202 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 202 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred CCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999987654
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=9.4e-34 Score=305.08 Aligned_cols=314 Identities=21% Similarity=0.252 Sum_probs=236.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|..+.-.+..|+ |..+.||+|||+++.+|++..++. |..+.||+||+.||.|-.+.+..
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----------CCceEEEeccHHHHHhHHHHHHH
Confidence 54 69999999999999888 999999999999999999866543 66799999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcC--------------------------------------------------cchHHHHHH
Q 007829 242 FLTPMRDAGYPDLRTLLCIGG--------------------------------------------------VDMRSQLEV 271 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg--------------------------------------------------~~~~~~~~~ 271 (588)
+...+ ++++++++.. .+..+....
T Consensus 139 l~~~L------glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a 212 (822)
T 3jux_A 139 VYLFL------GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA 212 (822)
T ss_dssp HHHHT------TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH
T ss_pred HHHHh------CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH
Confidence 99887 9999999872 111222222
Q ss_pred HhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeeecCCcccc-cC--------C--------------------
Q 007829 272 VKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-DL--------G-------------------- 315 (588)
Q Consensus 272 l~~~~~IvV~Tp~~l-~~~l~~~------~~~l~~~~~lIvDEah~l~-~~--------~-------------------- 315 (588)
. .|+|+++|...| .|.|..+ ......+.|.||||+|.++ |. |
T Consensus 213 Y--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~ 290 (822)
T 3jux_A 213 Y--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFV 290 (822)
T ss_dssp H--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSC
T ss_pred h--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcC
Confidence 2 379999999887 3565533 2335678899999999864 10 0
Q ss_pred ----CH---------------HHHHHH------------------HHhhhh-----------------------------
Q 007829 316 ----FE---------------DDIREV------------------FDHFKA----------------------------- 329 (588)
Q Consensus 316 ----~~---------------~~i~~i------------------~~~~~~----------------------------- 329 (588)
|. ..+..+ ...++.
T Consensus 291 ~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~ 370 (822)
T 3jux_A 291 KDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLP 370 (822)
T ss_dssp BTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCC
T ss_pred cCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCC
Confidence 00 001111 000000
Q ss_pred --------------------------------------cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceE
Q 007829 330 --------------------------------------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI 371 (588)
Q Consensus 330 --------------------------------------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~ 371 (588)
..++.+||+|.......|.+.+-.. .+.+... .......
T Consensus 371 grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn-kp~~R~d 447 (822)
T 3jux_A 371 GRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTH-KPMIRKD 447 (822)
T ss_dssp SCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCS-SCCCCEE
T ss_pred CCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCC-CCcceee
Confidence 1257899999998887777666443 2333222 1112222
Q ss_pred -EEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEE
Q 007829 372 -QEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDV 447 (588)
Q Consensus 372 -~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~V 447 (588)
+...+.....|...++..+.. .+.|+||||+|+..++.++..|...|+++.++||+..+.++..+...|+.| .|
T Consensus 448 ~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 448 HDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred cCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 234566777788888877754 577999999999999999999999999999999986555555555566555 69
Q ss_pred EEEcCccccCCCCC--------CcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCC
Q 007829 448 LVATDVASKGLDFP--------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 448 LVaT~~~~~GlDip--------~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~ 502 (588)
+|||++++||+||+ +..+||++++|.|...|+||+|||||.|.+|.+++|++..+
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99999999999998 66799999999999999999999999999999999999874
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-34 Score=279.10 Aligned_cols=210 Identities=29% Similarity=0.511 Sum_probs=182.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007829 137 DIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 137 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
..+....+|+++++++.+.+.|.+.||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. .
T Consensus 8 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~--------~ 79 (220)
T 1t6n_A 8 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--------V 79 (220)
T ss_dssp ------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------C
T ss_pred cccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--------c
Confidence 34445567999999999999999999999999999999999999999999999999999999999976532 1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc-CCcEEEeChHHHHHHHHcccC
Q 007829 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR-GVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~~~ 295 (588)
..++++||++||++|+.|+++.+.++.... +++++..++|+.+...+...+.. .++|+|+||++|.+++.....
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 80 TGQVSVLVMCHTRELAFQISKEYERFSKYM-----PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTS-----TTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSS
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHHHhhC-----CCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCC
Confidence 245689999999999999999999986532 47889999999888777776655 469999999999999988888
Q ss_pred CCCCcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCeEEE
Q 007829 296 NLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVN 359 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~ 359 (588)
.+.++++||+||||++.+ .+|...+..++..++..+|+++||||+++.+.++++.++.+|+.+.
T Consensus 155 ~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 155 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 899999999999999987 4788889999998888999999999999999999999999998764
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.3e-34 Score=314.95 Aligned_cols=308 Identities=18% Similarity=0.232 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
..|+|+|.++++.+. .++++|++++||+|||++++..+. .+... +...++|||||+ .|+.||.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~--------~~~~~~LIv~P~-~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKE--------NELTPSLVICPL-SVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHT--------TCCSSEEEEECS-TTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhc--------CCCCCEEEEccH-HHHHHHHHHH
Confidence 479999999998774 678999999999999998755443 33321 245679999995 6899999999
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHH
Q 007829 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~ 319 (588)
.+++. ++++..++|+... ......+|+|+||+.+..... +....+++||+||||++.+.+ ..
T Consensus 106 ~~~~~--------~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~ 167 (500)
T 1z63_A 106 SKFAP--------HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TK 167 (500)
T ss_dssp HHHCT--------TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SH
T ss_pred HHHCC--------CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HH
Confidence 99853 5677777766422 112347999999999864432 334568899999999998765 34
Q ss_pred HHHHHHhhhhcceEEEEeeccchH-HHHH------------------------------------HHHhccCCeEEEecC
Q 007829 320 IREVFDHFKAQRQTLLFSATMPTK-IQNF------------------------------------ARSALVKPVTVNVGR 362 (588)
Q Consensus 320 i~~i~~~~~~~~q~l~~SAT~~~~-i~~~------------------------------------~~~~l~~p~~i~~~~ 362 (588)
....+..++ ..+.+++|||+... ..++ +... ..|+.+....
T Consensus 168 ~~~~l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~-l~~~~lrr~k 245 (500)
T 1z63_A 168 IFKAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAI-ISPFILRRTK 245 (500)
T ss_dssp HHHHHHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHH-HTTTEECCCT
T ss_pred HHHHHHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHH-HhhHeeeecc
Confidence 455555564 35679999998432 1111 1111 1222221111
Q ss_pred CC----CcccceEEEeeeh---------------------------------------------------------hhHH
Q 007829 363 AG----AANLDVIQEVEYV---------------------------------------------------------KQEA 381 (588)
Q Consensus 363 ~~----~~~~~v~~~~~~~---------------------------------------------------------~~~~ 381 (588)
.. ...+.......++ ....
T Consensus 246 ~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~ 325 (500)
T 1z63_A 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSG 325 (500)
T ss_dssp TCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCH
T ss_pred cccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcch
Confidence 00 0000111110000 0112
Q ss_pred HHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcC-CcE-EEEEcCccc
Q 007829 382 KIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAG-KKD-VLVATDVAS 455 (588)
Q Consensus 382 k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~r~~~~~~F~~g-~~~-VLVaT~~~~ 455 (588)
|+..+.+.+ ...+.++||||+++..++.+.+.|... |+.+..+||++++.+|..+++.|++| ..+ +|++|++++
T Consensus 326 K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~ 405 (500)
T 1z63_A 326 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 405 (500)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred hHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc
Confidence 333333333 335779999999999999999999885 99999999999999999999999998 555 799999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEE--EEEEcCC
Q 007829 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~--~~~~~~~ 501 (588)
+|+|+|++++||+||+|+|+..|.||+||++|.|+.+.+ +.|+..+
T Consensus 406 ~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999999988765 4556554
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=314.39 Aligned_cols=369 Identities=17% Similarity=0.274 Sum_probs=248.2
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcCeE---eecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----
Q 007829 106 TGWKPPLPIRRMSKKACDLIRKQWHII---VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL---- 178 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~r~~~~i~---v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il---- 178 (588)
..|.....+.....+.++.+....... ......+.....|..+...+.... -..++|+|.+++..++
T Consensus 180 ~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~Lr~yQ~egv~~l~~~~~ 253 (800)
T 3mwy_W 180 ATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIK------GGELRDFQLTGINWMAFLWS 253 (800)
T ss_dssp CBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTCC------SSCCCTHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCccC------CCCcCHHHHHHHHHHHHHhh
Confidence 456554445556677777776554321 111112222234554443332211 1379999999998776
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.+++.|++++||+|||+.++..+...+... .....+||||| .+|+.||.+.+.+++ |++++.+
T Consensus 254 ~~~~~ILademGlGKT~~ai~~i~~l~~~~--------~~~~~~LIV~P-~sll~qW~~E~~~~~--------p~~~v~~ 316 (800)
T 3mwy_W 254 KGDNGILADEMGLGKTVQTVAFISWLIFAR--------RQNGPHIIVVP-LSTMPAWLDTFEKWA--------PDLNCIC 316 (800)
T ss_dssp TTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------SCCSCEEEECC-TTTHHHHHHHHHHHS--------TTCCEEE
T ss_pred cCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------CCCCCEEEEEC-chHHHHHHHHHHHHC--------CCceEEE
Confidence 889999999999999988766554443332 23456899999 678899999999985 4788888
Q ss_pred EEcCcchHHHHHHHh------------cCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHh
Q 007829 259 CIGGVDMRSQLEVVK------------RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDH 326 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~------------~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~ 326 (588)
++|+........... ...+|+|+||+.+...... +....+++|||||||++.+.+ ......+..
T Consensus 317 ~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~ 392 (800)
T 3mwy_W 317 YMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNS 392 (800)
T ss_dssp CCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTT
T ss_pred EeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHH
Confidence 888766555444322 2478999999998654321 223367899999999997654 556666666
Q ss_pred hhhcceEEEEeeccc----hHHHHHHHHhc-----------------------------cCCeEEEecCCCCc--ccceE
Q 007829 327 FKAQRQTLLFSATMP----TKIQNFARSAL-----------------------------VKPVTVNVGRAGAA--NLDVI 371 (588)
Q Consensus 327 ~~~~~q~l~~SAT~~----~~i~~~~~~~l-----------------------------~~p~~i~~~~~~~~--~~~v~ 371 (588)
++.. ..+++|||+- ..+..++.-+. ..|..+........ .+...
T Consensus 393 l~~~-~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~ 471 (800)
T 3mwy_W 393 FKVA-NRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKT 471 (800)
T ss_dssp SEEE-EEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEE
T ss_pred hhhc-cEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcE
Confidence 6544 4688999982 11211111110 11111110000000 00000
Q ss_pred EEeee---------------------------------------------------------------------------
Q 007829 372 QEVEY--------------------------------------------------------------------------- 376 (588)
Q Consensus 372 ~~~~~--------------------------------------------------------------------------- 376 (588)
..+.+
T Consensus 472 ~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (800)
T 3mwy_W 472 ERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGL 551 (800)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHh
Confidence 00000
Q ss_pred hhhHHHHH---HHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCc---EEEEE
Q 007829 377 VKQEAKIV---YLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK---DVLVA 450 (588)
Q Consensus 377 ~~~~~k~~---~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~---~VLVa 450 (588)
+....|+. .++..+...+.++||||.....++.|..+|...|+.+..+||+++..+|..+++.|+++.. .+|++
T Consensus 552 ~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 552 IMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred hhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 00122333 3334444567899999999999999999999999999999999999999999999998654 49999
Q ss_pred cCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEE--EEEEcCCC
Q 007829 451 TDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKNQ 502 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~--~~~~~~~~ 502 (588)
|.+++.|||++.+++||+||+|||+..+.|++||++|.|++..+ +.|++.+.
T Consensus 632 t~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred cccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999987644 55666653
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-30 Score=291.18 Aligned_cols=321 Identities=17% Similarity=0.217 Sum_probs=219.2
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 165 QPTPIQVQGLPVVL---------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 165 ~p~~~Q~~~i~~il---------~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
.++|+|.+++..+. .++.+|+.++||+|||+.++..+...+... +.......++|||||+ +|+.||
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----~~~~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----PDCKPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC----TTSSCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC----ccccCCCCcEEEEecH-HHHHHH
Confidence 68999999999874 456799999999999998766665443221 1111123468999997 889999
Q ss_pred HHHHHHHhhcccccCCCCceEEEEEcCcchHH--HHHHHhc------CCcEEEeChHHHHHHHHcccCCCCCcceeeecC
Q 007829 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS--QLEVVKR------GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~--~~~~l~~------~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDE 307 (588)
.+++.+++.. .+.+..++||..... ....... ..+|+|+|++.+.... ..+....+++||+||
T Consensus 130 ~~E~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 130 YNEVGKWLGG-------RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHHHGG-------GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETT
T ss_pred HHHHHHHcCC-------CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEEC
Confidence 9999999753 355666776643321 1222211 3789999999886542 334445788999999
Q ss_pred CcccccCCCHHHHHHHHHhhhhcceEEEEeeccchHH-------H------------HH---------------------
Q 007829 308 ADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI-------Q------------NF--------------------- 347 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i-------~------------~~--------------------- 347 (588)
||++.+.. ......+..++. ...+++|||+-.+- . .|
T Consensus 201 aH~ikn~~--~~~~~al~~l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 201 GHRLKNSD--NQTYLALNSMNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp GGGCCTTC--HHHHHHHHHHCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred ceecCChh--hHHHHHHHhccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 99998754 444455555543 45799999983210 0 00
Q ss_pred -------------HHHhcc----------CCeE----EEecCC----------------------CCcccceEE------
Q 007829 348 -------------ARSALV----------KPVT----VNVGRA----------------------GAANLDVIQ------ 372 (588)
Q Consensus 348 -------------~~~~l~----------~p~~----i~~~~~----------------------~~~~~~v~~------ 372 (588)
+..++. -|.. +.+... +........
T Consensus 278 ~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lr 357 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLK 357 (644)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 110110 0100 000000 000000000
Q ss_pred -----------------------------E----eeehhhHHH---HHHHHHHhh-cCCCCEEEEeCccccHHHHHHHHH
Q 007829 373 -----------------------------E----VEYVKQEAK---IVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 373 -----------------------------~----~~~~~~~~k---~~~ll~~l~-~~~~~viIF~~s~~~~~~l~~~L~ 415 (588)
. ........| +..++..+. ..+.++||||++...++.+...|.
T Consensus 358 k~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~ 437 (644)
T 1z3i_X 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR 437 (644)
T ss_dssp HHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH
Confidence 0 000001122 233333333 246799999999999999999999
Q ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhcCCc---EEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCcc
Q 007829 416 LKGVEAVAVHGGKDQEEREYAISSFKAGKK---DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTG 492 (588)
Q Consensus 416 ~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~---~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g 492 (588)
..|+.+..+||++++.+|..+++.|++|.. .+||+|.++++|||++++++||+||+|||+..|.|++||++|.|++.
T Consensus 438 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 517 (644)
T 1z3i_X 438 NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517 (644)
T ss_dssp HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCS
T ss_pred HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCC
Confidence 999999999999999999999999999875 48999999999999999999999999999999999999999999876
Q ss_pred E--EEEEEcCCC
Q 007829 493 I--ATTFINKNQ 502 (588)
Q Consensus 493 ~--~~~~~~~~~ 502 (588)
. ++.|+..+.
T Consensus 518 ~v~v~~lv~~~t 529 (644)
T 1z3i_X 518 TCYIYRLLSTGT 529 (644)
T ss_dssp CEEEEEEEETTS
T ss_pred ceEEEEEEECCC
Confidence 4 555676663
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=5.6e-32 Score=311.37 Aligned_cols=308 Identities=16% Similarity=0.133 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHhc--------------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007829 165 QPTPIQVQGLPVVLS--------------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~--------------g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
.|+|+|..|++.++. +++.+++++||||||+++ ++++..+.. .+..+++|||||+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--------~~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--------LDFIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--------CTTCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--------cCCCceEEEEeCcHH
Confidence 599999999999875 378999999999999997 666544322 123469999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHccc--CCCCCcceeeecC
Q 007829 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKK--MNLDNCRYLTLDE 307 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~--~~l~~~~~lIvDE 307 (588)
|+.|+.+.+..+... .+.++.+.......+. .+.+|+|+||++|..++.... ..+..+.+||+||
T Consensus 342 L~~Q~~~~f~~f~~~------------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDE 409 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD------------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDE 409 (1038)
T ss_dssp CCHHHHHHHHTTSTT------------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEES
T ss_pred HHHHHHHHHHHhccc------------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEc
Confidence 999999999887531 1234445555555554 468999999999998876532 2356788999999
Q ss_pred CcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH--------HH-------------HHHHHhccCCeEEEecCCCCc
Q 007829 308 ADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK--------IQ-------------NFARSALVKPVTVNVGRAGAA 366 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~--------i~-------------~~~~~~l~~p~~i~~~~~~~~ 366 (588)
||++.. ......+...++ ..++++|||||... .. +.+......|+.+........
T Consensus 410 AHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~ 485 (1038)
T 2w00_A 410 CHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQ 485 (1038)
T ss_dssp CCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGG
T ss_pred cchhcc---hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccch
Confidence 999763 244566666665 46899999999742 11 112222223333221110000
Q ss_pred c----c--c------eEEEeeehhhHHHHHH----HHHHhhc---------CCCCEEEEeCccccHHHHHHHHHHcC---
Q 007829 367 N----L--D------VIQEVEYVKQEAKIVY----LLECLQK---------TPPPVLIFCENKADVDDIHEYLLLKG--- 418 (588)
Q Consensus 367 ~----~--~------v~~~~~~~~~~~k~~~----ll~~l~~---------~~~~viIF~~s~~~~~~l~~~L~~~g--- 418 (588)
. . + +.+. .......++.. ++..... .+.++||||+++..|..+++.|...+
T Consensus 486 ~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~ 564 (1038)
T 2w00_A 486 FKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEA 564 (1038)
T ss_dssp GHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhh
Confidence 0 0 0 0000 00111222222 3332211 23479999999999999999997754
Q ss_pred ---------CcE-EEEeCC----------C----------CH-----------------------------HHHHHHHHH
Q 007829 419 ---------VEA-VAVHGG----------K----------DQ-----------------------------EEREYAISS 439 (588)
Q Consensus 419 ---------~~~-~~ihg~----------~----------~~-----------------------------~~r~~~~~~ 439 (588)
+.+ +++||+ + ++ .+|..++++
T Consensus 565 ~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~ 644 (1038)
T 2w00_A 565 ANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQR 644 (1038)
T ss_dssp TTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred cccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 455 455542 2 22 247889999
Q ss_pred HhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCc----cEEEEEEc
Q 007829 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT----GIATTFIN 499 (588)
Q Consensus 440 F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~----g~~~~~~~ 499 (588)
|++|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|++
T Consensus 645 Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 645 VKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999999999999 788999999999999999999998754 67777764
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=4.8e-31 Score=248.68 Aligned_cols=183 Identities=74% Similarity=1.081 Sum_probs=153.5
Q ss_pred HHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCC
Q 007829 348 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGG 427 (588)
Q Consensus 348 ~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 427 (588)
...++.+|..+.++..+..+.++.|.+.++....|+..|++.+...++++||||+++..++.++..|...|+.+..+||+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34677889888888888888899999999999999999999998888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHH
Q 007829 428 KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTL 507 (588)
Q Consensus 428 ~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~ 507 (588)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++..+...+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987677889
Q ss_pred HHHHHHHHHhcCcCchHHhhccC
Q 007829 508 LDLKHLLQEAKQRIPPVLAELND 530 (588)
Q Consensus 508 ~~l~~~l~~~~~~vp~~l~~l~~ 530 (588)
..+.+++...++.+|++|.++.+
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHccCcCCHHHHhhcC
Confidence 99999999999999999988765
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.9e-28 Score=267.03 Aligned_cols=315 Identities=22% Similarity=0.258 Sum_probs=234.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+ .||++|..++|.++.|+ |+.+.||+|||++|.+|++..++ .|..++||+||++||.|.++.+.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-----------~G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-----------TGKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----------TCSCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----------hCCCEEEEeCCHHHHHHHHHHHH
Confidence 488 99999999999999998 99999999999999999975543 25679999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHccc------CCCC---CcceeeecCCcc
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKK------MNLD---NCRYLTLDEADR 310 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~------~~l~---~~~~lIvDEah~ 310 (588)
.++..+ ++++.+++||.+... .....+++|+|+||++| .|++..+. +.++ .+.++|+||+|.
T Consensus 142 ~l~~~l------GLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 142 PVYRGL------GLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHHTT------TCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHHhc------CCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 999877 899999999987543 33345799999999999 88888653 5677 899999999999
Q ss_pred cc-cCCCH---------------HHHHHHHHhhh----------------------------------------------
Q 007829 311 LV-DLGFE---------------DDIREVFDHFK---------------------------------------------- 328 (588)
Q Consensus 311 l~-~~~~~---------------~~i~~i~~~~~---------------------------------------------- 328 (588)
|+ +.++. ..+..++..++
T Consensus 214 mLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly 293 (997)
T 2ipc_A 214 ILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLF 293 (997)
T ss_dssp HTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHH
T ss_pred HHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCcccc
Confidence 87 32211 01111111110
Q ss_pred ----------------h---------------------------------------------------------------
Q 007829 329 ----------------A--------------------------------------------------------------- 329 (588)
Q Consensus 329 ----------------~--------------------------------------------------------------- 329 (588)
.
T Consensus 294 ~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~Qn 373 (997)
T 2ipc_A 294 SPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQN 373 (997)
T ss_dssp TTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHH
Confidence 0
Q ss_pred ----cceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeC
Q 007829 330 ----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCE 402 (588)
Q Consensus 330 ----~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~ 402 (588)
...+.+||+|.......|.+.+-...+.+-. ..+....+ .....|.....|+..+++.+. +.+.||||+|.
T Consensus 374 yFr~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv~IPT-n~p~~R~D-~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~ 451 (997)
T 2ipc_A 374 FFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPT-NRPVIRKD-FPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTI 451 (997)
T ss_dssp HHTTSSEEEEEESSCGGGHHHHHHHHCCCEEECCC-SSCCCCEE-EEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHhChHheecCCCchHHHHHHHHHhCCCEEEcCC-CCCccccc-CCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 0246788888887777776666554332222 12222222 234456667777777776554 35789999999
Q ss_pred ccccHHHHHHHHH-------------------------------------------------------------------
Q 007829 403 NKADVDDIHEYLL------------------------------------------------------------------- 415 (588)
Q Consensus 403 s~~~~~~l~~~L~------------------------------------------------------------------- 415 (588)
|+..++.|+.+|.
T Consensus 452 SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 531 (997)
T 2ipc_A 452 SIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLK 531 (997)
T ss_dssp SHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 9999999999998
Q ss_pred ---------HcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEEEEEcCccccCCCCCCc-------------------c--
Q 007829 416 ---------LKGVEAVAVHGGKDQEEREYAISSFKAG-KKDVLVATDVASKGLDFPDI-------------------Q-- 464 (588)
Q Consensus 416 ---------~~g~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VLVaT~~~~~GlDip~v-------------------~-- 464 (588)
..|++.-++++... +|+.-+-. ..| ...|-|||++++||.||.=- .
T Consensus 532 ~~~~~~~~~~~gI~H~VLNAK~h--e~EAeIIA-qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~ 608 (997)
T 2ipc_A 532 RAVHTLAVLRQGIPHQVLNAKHH--AREAEIVA-QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWK 608 (997)
T ss_dssp HHHHHHHHHHHCCCCCEECSSSH--HHHHHHHH-TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHH
T ss_pred hhhhhhHHHHcCCCeeeccccch--HHHHHHHH-hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccc
Confidence 56777777777543 33322221 234 35699999999999998532 1
Q ss_pred -----------------------------------------------------eEEecCCCCChhHHHHHhcccCCCCCc
Q 007829 465 -----------------------------------------------------HVINYDMPAEIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 465 -----------------------------------------------------~VI~~~~p~s~~~y~QriGRagR~g~~ 491 (588)
|||--..+.|..--.|..||+||.|.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDP 688 (997)
T 2ipc_A 609 VELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDP 688 (997)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCC
T ss_pred cccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCC
Confidence 788888888999999999999999999
Q ss_pred cEEEEEEcCCC
Q 007829 492 GIATTFINKNQ 502 (588)
Q Consensus 492 g~~~~~~~~~~ 502 (588)
|.+..|++-++
T Consensus 689 GsSrF~LSLeD 699 (997)
T 2ipc_A 689 GGSRFYVSFDD 699 (997)
T ss_dssp CEEEEEEESSS
T ss_pred CCeEEEEECCh
Confidence 99999998764
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.5e-28 Score=273.93 Aligned_cols=109 Identities=21% Similarity=0.348 Sum_probs=104.5
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
+.+.++||||+|+..++.++++|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -----CCChhHHHHHhcccCCCCCccEEEEEEcCC
Q 007829 472 -----PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 472 -----p~s~~~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
|.|...|+||+|||||.| .|.+++|++..
T Consensus 517 d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 517 DKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp TSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred cccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 899999999999999995 89999999876
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=3.6e-27 Score=262.59 Aligned_cols=167 Identities=22% Similarity=0.253 Sum_probs=126.3
Q ss_pred hcceEEEEeeccchHHHHHHHHhccCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHH
Q 007829 329 AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVD 408 (588)
Q Consensus 329 ~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~ 408 (588)
..+|+++||||+++...... ...+...+...+.... .............+...+....+.+.++||||+|+..++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p-~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae 459 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP-LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSE 459 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC-EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHH
T ss_pred cCCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC-eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHH
Confidence 46789999999987542221 1112211111111111 111111112222222222222335679999999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC-----CCChhHHHHHhc
Q 007829 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM-----PAEIENYVHRIG 483 (588)
Q Consensus 409 ~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~-----p~s~~~y~QriG 483 (588)
.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++. |.+...|+||+|
T Consensus 460 ~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~G 539 (661)
T 2d7d_A 460 DLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 539 (661)
T ss_dssp HHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred ccCCCCCccEEEEEEcCC
Q 007829 484 RTGRCGKTGIATTFINKN 501 (588)
Q Consensus 484 RagR~g~~g~~~~~~~~~ 501 (588)
||||. ..|.+++|+++.
T Consensus 540 RagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 540 RAARN-AEGRVIMYADKI 556 (661)
T ss_dssp TTTTS-TTCEEEEECSSC
T ss_pred cccCC-CCCEEEEEEeCC
Confidence 99998 789999999887
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=227.85 Aligned_cols=166 Identities=41% Similarity=0.735 Sum_probs=139.8
Q ss_pred CCcccceEEEeeehhhHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 007829 364 GAANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 364 ~~~~~~v~~~~~~~~~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~ 441 (588)
...+.++.|.+..+....|+..|.+.+... +.++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 345678889998888888988888888764 578999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcC
Q 007829 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRI 521 (588)
Q Consensus 442 ~g~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~v 521 (588)
+|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+....+.+
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG-GGGGHHHHHHHHHHTTCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh-hHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999987 6778899999999999999
Q ss_pred chHHhhccC
Q 007829 522 PPVLAELND 530 (588)
Q Consensus 522 p~~l~~l~~ 530 (588)
|++|.++..
T Consensus 173 ~~~l~~~a~ 181 (185)
T 2jgn_A 173 PSWLENMAY 181 (185)
T ss_dssp CHHHHHHHC
T ss_pred CHHHHHHHH
Confidence 999988754
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=1.4e-26 Score=212.68 Aligned_cols=148 Identities=38% Similarity=0.612 Sum_probs=132.9
Q ss_pred CcccceEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 007829 365 AANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 365 ~~~~~v~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g 443 (588)
....++.+.+..+....|+..|...+.. .+.++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456688888888888898888887765 456999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHH
Q 007829 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 444 ~~~VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~ 153 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEEY 153 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHHH
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 44455554443
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4e-27 Score=218.25 Aligned_cols=157 Identities=28% Similarity=0.460 Sum_probs=136.1
Q ss_pred cceEEEeeehhhHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007829 368 LDVIQEVEYVKQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 368 ~~v~~~~~~~~~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~ 446 (588)
.++.|.+..+....|+..+...+... ..++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 45677777888888888888887664 56899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchH
Q 007829 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 447 VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~ 524 (588)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.++...+..+.+.+......+|..
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999987644455566655554444445444
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=1.4e-26 Score=213.12 Aligned_cols=156 Identities=28% Similarity=0.557 Sum_probs=129.8
Q ss_pred ceEEEeeehhhHH-HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007829 369 DVIQEVEYVKQEA-KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 369 ~v~~~~~~~~~~~-k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~ 446 (588)
++.|.+..+..+. |...+...+.. ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 4556666666555 87778777765 457999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHHHhcCcCchHH
Q 007829 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525 (588)
Q Consensus 447 VLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l 525 (588)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+++....+.+|..+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHccCccccCccH
Confidence 9999999999999999999999999999999999999999999999999999987 55566666666554445555443
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=7.6e-26 Score=210.39 Aligned_cols=146 Identities=27% Similarity=0.507 Sum_probs=125.5
Q ss_pred ccceEEEeeehhhHH-HHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007829 367 NLDVIQEVEYVKQEA-KIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 367 ~~~v~~~~~~~~~~~-k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~ 444 (588)
..++.|.+..+.... |+..+...+... .+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456778877777554 888888888764 568999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCccccCCCCCCcceEEecCCC------CChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHH
Q 007829 445 KDVLVATDVASKGLDFPDIQHVINYDMP------AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 445 ~~VLVaT~~~~~GlDip~v~~VI~~~~p------~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
.+|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+++. +...+..+.+.
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~ 158 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQDH 158 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHHH
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHHH
Confidence 9999999999999999999999999999 89999999999999999999999999877 34444444433
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=3.5e-25 Score=212.32 Aligned_cols=141 Identities=33% Similarity=0.555 Sum_probs=122.8
Q ss_pred eeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 374 VEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 374 ~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
........|+..+...+.. .+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 10 ~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 10 AVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp EEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred EEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 3344556677777776654 567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHHH
Q 007829 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+.
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVG 151 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHS
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999887 4555555554443
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=2.6e-24 Score=216.16 Aligned_cols=143 Identities=34% Similarity=0.553 Sum_probs=121.4
Q ss_pred eEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007829 370 VIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 370 v~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 448 (588)
+.+.+..+....|+..+...+.. .+.++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 34555556666777777777654 47799999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHH
Q 007829 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
|||+++++|+|+|++++||+||+|++...|+||+|||||.|+.|.+++|+++. +...+..+.+.
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~~ 146 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERA 146 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHHH
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 44444444443
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=206.77 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=122.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH-HHHHHH
Q 007829 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ-TYEVVE 240 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q-~~~~~~ 240 (588)
....|+++|.++++.++.++++++.+|||+|||++++++++..+..... ...++++||++|+++|+.| +.+.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-----ASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-----TTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-----ccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999877654321 1246789999999999999 778888
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc------CCCCCcceeeecCCcccccC
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK------MNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~------~~l~~~~~lIvDEah~l~~~ 314 (588)
.+... ++++..+.|+.........+..+++|+|+||++|...+.... ..+..+++|||||||++.+.
T Consensus 105 ~~~~~-------~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 105 PFLKK-------WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HHHTT-------TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred HHhcc-------CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 88642 577888888876665555555678999999999998887643 56788999999999999877
Q ss_pred CCHHHHHHHHHhhh--------------hcceEEEEeec
Q 007829 315 GFEDDIREVFDHFK--------------AQRQTLLFSAT 339 (588)
Q Consensus 315 ~~~~~i~~i~~~~~--------------~~~q~l~~SAT 339 (588)
++...+...+.... +..++|+||||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 178 AVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 66555533222111 45789999998
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=6e-24 Score=232.05 Aligned_cols=303 Identities=17% Similarity=0.210 Sum_probs=170.2
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPV----VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY 236 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~----il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~ 236 (588)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 366 799999998754 4589999999999999999999998742 578999999999999999
Q ss_pred HHHHHHhhcccccCCCCceEEEEEcCcch--------------------------------HHHHH--------------
Q 007829 237 EVVEQFLTPMRDAGYPDLRTLLCIGGVDM--------------------------------RSQLE-------------- 270 (588)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--------------------------------~~~~~-------------- 270 (588)
+.+..+ ++++..+.|.... .+.+.
T Consensus 69 ~~~~~l----------~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~ 138 (540)
T 2vl7_A 69 KNAKLL----------GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSL 138 (540)
T ss_dssp HHHGGG----------TCCEEEC---------------------------------------------------------
T ss_pred HHHHhc----------CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHH
Confidence 888774 2333333221100 00001
Q ss_pred -HHhcCCcEEEeChHHHHHHHHcccC-------CCCCcceeeecCCcccccCC--C-----HHH----------------
Q 007829 271 -VVKRGVHIVVATPGRLKDMLAKKKM-------NLDNCRYLTLDEADRLVDLG--F-----EDD---------------- 319 (588)
Q Consensus 271 -~l~~~~~IvV~Tp~~l~~~l~~~~~-------~l~~~~~lIvDEah~l~~~~--~-----~~~---------------- 319 (588)
....+++|||+|+..|.+....+.+ .+....+|||||||+|.+.. | ...
T Consensus 139 r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~ 218 (540)
T 2vl7_A 139 RANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNR 218 (540)
T ss_dssp CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcch
Confidence 1123579999999999875554332 24567899999999984310 0 000
Q ss_pred ------------------------------------------HHHHHH--------------------hh----------
Q 007829 320 ------------------------------------------IREVFD--------------------HF---------- 327 (588)
Q Consensus 320 ------------------------------------------i~~i~~--------------------~~---------- 327 (588)
+..++. .+
T Consensus 219 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 298 (540)
T 2vl7_A 219 IDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCN 298 (540)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEET
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEEC
Confidence 000000 00
Q ss_pred -----hh---------cce----EEEEeeccchHHHHHHHHhccCCeEEEecCC-CCc----ccceEEEeeehhh--HHH
Q 007829 328 -----KA---------QRQ----TLLFSATMPTKIQNFARSALVKPVTVNVGRA-GAA----NLDVIQEVEYVKQ--EAK 382 (588)
Q Consensus 328 -----~~---------~~q----~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~-~~~----~~~v~~~~~~~~~--~~k 382 (588)
.+ ... +|++|||+++.. .+...+. ...... +.. ...+...+.+... ...
T Consensus 299 ~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~-~~~~~f~-----~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~ 372 (540)
T 2vl7_A 299 GSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESL-TLTNSYK-----IVVNESYGRGEYYYCPNVTSELRKRNSNIPIY 372 (540)
T ss_dssp TEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTC-CCTTEEE-----EECCCC-CCCEEEECTTCCCCGGGHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCc-ccchhcC-----CchhheecCCcceeccccCCCcccccCHHHHH
Confidence 00 012 377788877610 0000010 000000 000 0001111111111 112
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEE--EcCccccCCCC
Q 007829 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV--ATDVASKGLDF 460 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLV--aT~~~~~GlDi 460 (588)
...+...+...++.+|||++|+..++.+++.|.. +. ..++|.. .+|..+++.|+++. .||+ +|+.+++|||+
T Consensus 373 ~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 373 SILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 2333444455677899999999999999988854 33 4556654 46888999999865 5666 88999999999
Q ss_pred CC----cceEEecCCCCC-h-----------------------------hHHHHHhcccCCCCCccEEEEEEcC
Q 007829 461 PD----IQHVINYDMPAE-I-----------------------------ENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 461 p~----v~~VI~~~~p~s-~-----------------------------~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
|+ +++||++++|.. + ....|.+||+-|....--++++++.
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 98 899999999841 1 2245889999997444334555543
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=1.1e-25 Score=208.26 Aligned_cols=144 Identities=31% Similarity=0.561 Sum_probs=125.9
Q ss_pred eEEEeeehhh-HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEE
Q 007829 370 VIQEVEYVKQ-EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDV 447 (588)
Q Consensus 370 v~~~~~~~~~-~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~V 447 (588)
+.+.+..+.. ..|+..+...+.. .+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 4455555555 6677777776665 3568999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEEEEEEcCCCChhHHHHHHHHH
Q 007829 448 LVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 448 LVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|++.. +...+..+.+.+
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~ 149 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKVGRYI 149 (170)
Confidence 999999999999999999999999999999999999999999999999999887 444555555443
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=191.45 Aligned_cols=182 Identities=17% Similarity=0.160 Sum_probs=131.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007829 153 PILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 153 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
.+.+.+.......++++|.++++.+..|++++++||||||||.++.++++........ ..+..+++++|+++|+
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISA 122 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHH
Confidence 3333344334446799999999999999999999999999999999998877655321 2355899999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCccc-
Q 007829 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL- 311 (588)
Q Consensus 233 ~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l- 311 (588)
.|+.+.+....... .+..+.......... ...+++|+|+||++|.+++.. .++++++||+||||++
T Consensus 123 ~q~~~~~~~~~~~~-----~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~ 189 (235)
T 3llm_A 123 VSVAERVAFERGEE-----PGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERD 189 (235)
T ss_dssp HHHHHHHHHTTTCC-----TTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCC
T ss_pred HHHHHHHHHHhccc-----cCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCC
Confidence 99988887664321 123333322211110 013478999999999999876 4889999999999996
Q ss_pred ccCCCH-HHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhccCCe
Q 007829 312 VDLGFE-DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 312 ~~~~~~-~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
.+++|. ..++.++... +..|+++||||++... +.+.+...|+
T Consensus 190 ~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 190 INTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred cchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 777766 3555555554 5789999999999875 5555544444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=3.3e-20 Score=203.21 Aligned_cols=307 Identities=16% Similarity=0.112 Sum_probs=194.8
Q ss_pred CCcHHHHHHHHHH----hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~i----l~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+|+|.+.+..+ ..|+++++.||||+|||++|++|++. .+++++|++||++|+.|+.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--------------~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--------------VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--------------HCSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--------------CCCeEEEEcCCHHHHHHHHHHHH
Confidence 6899999987754 48999999999999999999999986 26789999999999999998888
Q ss_pred HHhhcccccCCCCceEEEEEcCcch---------------------------------HHHH------------------
Q 007829 241 QFLTPMRDAGYPDLRTLLCIGGVDM---------------------------------RSQL------------------ 269 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~---------------------------------~~~~------------------ 269 (588)
.+.... ++++.++.|..+. ....
T Consensus 69 ~l~~~~------~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~a 142 (551)
T 3crv_A 69 KIREKR------NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSL 142 (551)
T ss_dssp TCCCSS------CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhhhc------CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHH
Confidence 875433 6777776663221 1111
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcccCCC-CCcceeeecCCcccccCCC--------------------------------
Q 007829 270 EVVKRGVHIVVATPGRLKDMLAKKKMNL-DNCRYLTLDEADRLVDLGF-------------------------------- 316 (588)
Q Consensus 270 ~~l~~~~~IvV~Tp~~l~~~l~~~~~~l-~~~~~lIvDEah~l~~~~~-------------------------------- 316 (588)
.....+++|||+||..|.+...+..+.+ ....+|||||||+|.+ ..
T Consensus 143 r~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~ 221 (551)
T 3crv_A 143 LNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLL 221 (551)
T ss_dssp HHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223478999999999988765544433 4667899999999876 10
Q ss_pred -----------------------HHHHHHH----------------------------HH--------------------
Q 007829 317 -----------------------EDDIREV----------------------------FD-------------------- 325 (588)
Q Consensus 317 -----------------------~~~i~~i----------------------------~~-------------------- 325 (588)
...+..+ +.
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~p 301 (551)
T 3crv_A 222 NQLREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKN 301 (551)
T ss_dssp HHHTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEEC
T ss_pred HHHHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEE
Confidence 0000000 00
Q ss_pred --------hhhhc-ceEEEEeeccchHHHHHHHHhccC-CeEE-----EecCCCCcccceEEE----ee--eh---h--h
Q 007829 326 --------HFKAQ-RQTLLFSATMPTKIQNFARSALVK-PVTV-----NVGRAGAANLDVIQE----VE--YV---K--Q 379 (588)
Q Consensus 326 --------~~~~~-~q~l~~SAT~~~~i~~~~~~~l~~-p~~i-----~~~~~~~~~~~v~~~----~~--~~---~--~ 379 (588)
.+... +.+|++|||+.+ ...+...+-.. +... .++..- ..+..-. +. +. . .
T Consensus 302 l~~~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~ 378 (551)
T 3crv_A 302 PEISYYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMW 378 (551)
T ss_dssp CCTHHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHH
T ss_pred CCHHHHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHH
Confidence 01112 578999999987 33333332222 2210 011110 1111000 00 00 0 0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc--CccccC
Q 007829 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT--DVASKG 457 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT--~~~~~G 457 (588)
..-...+.+.+...++.++||++|....+.+++. .+..+..=..+++ +...++.|+.....||+|| ..+++|
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EG 452 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEG 452 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCS
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccc
Confidence 1122233344455678999999999999998873 3444433223445 3457788864445799998 689999
Q ss_pred CCCC-----CcceEEecCCCCC---h----------------h-----------HHHHHhcccCCCCCccEEEEEEcCC
Q 007829 458 LDFP-----DIQHVINYDMPAE---I----------------E-----------NYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 458 lDip-----~v~~VI~~~~p~s---~----------------~-----------~y~QriGRagR~g~~g~~~~~~~~~ 501 (588)
||+| .++.||..++|.. + . ...|.+||+-|....--++++++..
T Consensus 453 iD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 453 IELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp SCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred ccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 9999 3788998887731 0 1 1248889998875554455555443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=4.9e-22 Score=199.28 Aligned_cols=155 Identities=16% Similarity=0.093 Sum_probs=124.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.++++.++.+++.++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+.+++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 37999999999999988899999999999999998887765533 23489999999999999999999985
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHH
Q 007829 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i 323 (588)
.. +...+..+.||..... ....+.+|+|+||+.+... ....+..+++||+||||++.+ ..+..+
T Consensus 182 ~~------~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~i 245 (282)
T 1rif_A 182 LF------SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSI 245 (282)
T ss_dssp SC------CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHH
T ss_pred cc------ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHH
Confidence 42 2567777777765432 1124579999999877432 233467889999999999974 578888
Q ss_pred HHhhhhcceEEEEeeccchHH
Q 007829 324 FDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT~~~~i 344 (588)
+..+...++++++|||+++..
T Consensus 246 l~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 246 ISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTTCTTCCEEEEECSSCCTTS
T ss_pred HHHhhcCCeEEEEeCCCCCcc
Confidence 888877899999999998654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=5.5e-19 Score=172.13 Aligned_cols=139 Identities=22% Similarity=0.115 Sum_probs=110.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 47999999999999999999999999999999988776531 457999999999999999998884
Q ss_pred hcccccCCCCce-EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 244 TPMRDAGYPDLR-TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 244 ~~~~~~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
+++ +..+.|+... ..+|+|+||+.+...... ....+++|||||||++.+..| +.
T Consensus 157 ---------~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~ 211 (237)
T 2fz4_A 157 ---------GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQ 211 (237)
T ss_dssp ---------CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HH
T ss_pred ---------CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HH
Confidence 566 7777776542 469999999998665542 124589999999999987654 34
Q ss_pred HHHhhhhcceEEEEeeccchH
Q 007829 323 VFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~ 343 (588)
++..++ ..+++++|||++..
T Consensus 212 i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 212 IAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HHHTCC-CSEEEEEEESCC--
T ss_pred HHHhcc-CCEEEEEecCCCCC
Confidence 555554 56789999999864
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=3.6e-18 Score=188.55 Aligned_cols=111 Identities=18% Similarity=0.255 Sum_probs=75.1
Q ss_pred HHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc--CccccCCCCCC-
Q 007829 386 LLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT--DVASKGLDFPD- 462 (588)
Q Consensus 386 ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT--~~~~~GlDip~- 462 (588)
+...+...++.++||++|....+.+++.|. .+... ...+++..++..+++.|+ ++..||++| ..+++|||+|+
T Consensus 440 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~ 515 (620)
T 4a15_A 440 IEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGN 515 (620)
T ss_dssp HHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------C
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCC
Confidence 334444567889999999999999998886 22222 444556678999999999 888899997 48999999998
Q ss_pred -cceEEecCCCCC-------------------h----------hHHHHHhcccCCCCCccEEEEEEcC
Q 007829 463 -IQHVINYDMPAE-------------------I----------ENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 463 -v~~VI~~~~p~s-------------------~----------~~y~QriGRagR~g~~g~~~~~~~~ 500 (588)
.++||..++|.. . ....|.+||+-|.-..--++++++.
T Consensus 516 ~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 516 ELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred ceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 778999998842 1 1125899999998555445555543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=9.8e-19 Score=173.41 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcC-CcE-EEEEcC
Q 007829 379 QEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAG-KKD-VLVATD 452 (588)
Q Consensus 379 ~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~r~~~~~~F~~g-~~~-VLVaT~ 452 (588)
...|+..+.+.+. ..+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| ..+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 3455555555554 36789999999999999999999885 99999999999999999999999998 676 789999
Q ss_pred ccccCCCCCCcceEEecCCCCChhHHHHHhcccCCCCCccEE--EEEEcCCC
Q 007829 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKNQ 502 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~s~~~y~QriGRagR~g~~g~~--~~~~~~~~ 502 (588)
++++|+|++++++||+||+||++..|.||+||++|.|+.+.+ +.|++.+.
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 999999999999999999999999999999999999988755 56676653
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.85 E-value=3.5e-09 Score=116.72 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=91.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHh--HHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKT--LVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKT--l~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
+++|..+++.++.++.+++.|++|+||| ++++++++..+. ...+.++++++||..+|.++.+.+.....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~---------~~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA---------DGERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC---------SSCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh---------hcCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 556666654321 12467899999999999999888877655
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCC-cEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHH
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGV-HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~-~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i 323 (588)
.+ ++..... .+.+. .. ... .++-.+|+.. . +.........+++||||||+ |++ ...+..+
T Consensus 222 ~l------~l~~~~~-~~~~~--~~----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~L 282 (608)
T 1w36_D 222 QL------PLTDEQK-KRIPE--DA----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRL 282 (608)
T ss_dssp HS------SCCSCCC-CSCSC--CC----BTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHH
T ss_pred cC------CCCHHHH-hccch--hh----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHH
Confidence 43 1110000 00000 00 001 1222233221 1 11122223378999999999 554 3677888
Q ss_pred HHhhhhcceEEEEeec
Q 007829 324 FDHFKAQRQTLLFSAT 339 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT 339 (588)
+..++...|++++.-.
T Consensus 283 l~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 283 IDALPDHARVIFLGDR 298 (608)
T ss_dssp HHTCCTTCEEEEEECT
T ss_pred HHhCCCCCEEEEEcch
Confidence 9999888899887654
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.11 E-value=2.7e-05 Score=85.98 Aligned_cols=70 Identities=20% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+..+++.|.+|+..++.+.-+++.||+|+|||.+..- ++..+.. ..+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~---------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR---------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT---------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH---------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999888889999999999976433 3333332 14668999999999999998887654
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.5e-05 Score=87.15 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+..+++.|.+|+..++.+.-+++.||.|+|||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~---------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI---------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH---------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC---------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568899999999999877789999999999976433 33333331 3568999999999999999988775
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.07 E-value=8.4e-06 Score=90.60 Aligned_cols=68 Identities=24% Similarity=0.216 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 164 VQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~d-vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
..+.+-|.+|+..+++.++ .++.||.|+|||.+..- ++..+.. .+.++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~----------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK----------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH----------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh----------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 3578999999999998776 57789999999977443 3334443 4678999999999999998888665
No 98
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.02 E-value=3.5e-05 Score=76.55 Aligned_cols=118 Identities=12% Similarity=0.065 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007829 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlD 459 (588)
...+..++..+.+.+++|+||++.....+.+.++|..+|+.+..+.|.....++. -.++...+.+.|...+-|+|
T Consensus 111 f~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin 185 (328)
T 3hgt_A 111 FSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTK 185 (328)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTT
T ss_pred HHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcC
Confidence 3446667777788899999999999999999999999999999999985543221 12456666666777777776
Q ss_pred -----CCCcceEEecCCCCChhHH-HHHhcccCCCC----CccEEEEEEcCCC
Q 007829 460 -----FPDIQHVINYDMPAEIENY-VHRIGRTGRCG----KTGIATTFINKNQ 502 (588)
Q Consensus 460 -----ip~v~~VI~~~~p~s~~~y-~QriGRagR~g----~~g~~~~~~~~~~ 502 (588)
+...+.||.||..|++.+- +|.+-|+.|.| +.-.++-|++.+.
T Consensus 186 ~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 186 YPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp SCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred cccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6789999999999999985 99998888873 3446777787764
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.96 E-value=6.2e-05 Score=85.06 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...+++.|.+|+..++.+.-+++.||.|+|||.+.. .++..+... .+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 456899999999999988888999999999997643 333333321 4568999999999999988887654
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.95 E-value=2.3e-05 Score=85.42 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.+++.|.+++..++.++.+++.|+.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----------~g~~Vl~~ApT~~Aa~~L~e~~~---- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----------LGLEVGLCAPTGKAARRLGEVTG---- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----------cCCeEEEecCcHHHHHHhHhhhc----
Confidence 689999999999999999999999999999653 223333322 46789999999998887654321
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHH
Q 007829 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~ 324 (588)
.....++ .+. .. .|. .+.........+++||||||+.+.. ..+..++
T Consensus 254 ---------~~a~Tih----------~ll---~~---~~~----~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll 300 (574)
T 3e1s_A 254 ---------RTASTVH----------RLL---GY---GPQ----GFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLL 300 (574)
T ss_dssp ---------SCEEEHH----------HHT---TE---ETT----EESCSSSSCCSCSEEEECCGGGCCH----HHHHHHH
T ss_pred ---------ccHHHHH----------HHH---cC---Ccc----hhhhhhcccccCCEEEEcCccCCCH----HHHHHHH
Confidence 1111110 000 00 000 0011122344678999999998642 5667777
Q ss_pred HhhhhcceEEEEee
Q 007829 325 DHFKAQRQTLLFSA 338 (588)
Q Consensus 325 ~~~~~~~q~l~~SA 338 (588)
..++...+++++.-
T Consensus 301 ~~~~~~~~lilvGD 314 (574)
T 3e1s_A 301 AAVPPGARVLLVGD 314 (574)
T ss_dssp TTSCTTCEEEEEEC
T ss_pred HhCcCCCEEEEEec
Confidence 87777777766543
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.95 E-value=0.00045 Score=76.66 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++-|.+++.. ....+++.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+.+++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 5789999999973 4678999999999999775544443332211 123479999999999999999998875
Q ss_pred h
Q 007829 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 79 ~ 79 (647)
T 3lfu_A 79 G 79 (647)
T ss_dssp C
T ss_pred c
Confidence 3
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.85 E-value=5.2e-05 Score=80.56 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=49.9
Q ss_pred CCCCCCcHHHHHHHHHHhcC-----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007829 161 KGIVQPTPIQVQGLPVVLSG-----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g-----~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
+.|..+++-|.+++..++.. ..+++.|+.|||||.+. ..++..+... ....+++++||...+..+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---------~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---------GETGIILAAPTHAAKKIL 90 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---------TCCCEEEEESSHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---------CCceEEEecCcHHHHHHH
Confidence 45788999999999987632 38999999999999553 3344444332 123689999999888766
Q ss_pred HHHH
Q 007829 236 YEVV 239 (588)
Q Consensus 236 ~~~~ 239 (588)
.+.+
T Consensus 91 ~~~~ 94 (459)
T 3upu_A 91 SKLS 94 (459)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 5543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.29 E-value=0.0027 Score=65.11 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++||+..|..+++.+..++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---------SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6899999999877555678999999999998766655543332 2467899999999999999888888775
Q ss_pred cc
Q 007829 245 PM 246 (588)
Q Consensus 245 ~~ 246 (588)
.+
T Consensus 234 ~~ 235 (385)
T 2o0j_A 234 LL 235 (385)
T ss_dssp HS
T ss_pred hC
Confidence 44
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.99 E-value=0.013 Score=64.02 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=58.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+|+|...+..+-..+-+++..+-|+|||.+....++..+.. ..+..+++++|++..|..+.+.+..++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---------~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT---------SSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh---------CCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 5899999999877556789999999999998766555444433 2456899999999999999988888876
Q ss_pred cc
Q 007829 245 PM 246 (588)
Q Consensus 245 ~~ 246 (588)
.+
T Consensus 234 ~~ 235 (592)
T 3cpe_A 234 LL 235 (592)
T ss_dssp TS
T ss_pred hC
Confidence 54
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.87 E-value=0.005 Score=55.94 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHh---------cCCCEEEEecCCchHhHHHH
Q 007829 167 TPIQVQGLPVVL---------SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 167 ~~~Q~~~i~~il---------~g~dvi~~a~TGsGKTl~~~ 198 (588)
.+.|..++..+. .|+.+++.||+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 345555555543 47889999999999996543
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.24 E-value=0.0043 Score=54.71 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=25.6
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhc-ceEEEEeecc
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSATM 340 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~-~q~l~~SAT~ 340 (588)
.+.++||+||++.+.... ...+..+++.+... ..++++|+..
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 356899999999865433 45555666555443 3325555553
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.07 E-value=0.012 Score=61.03 Aligned_cols=107 Identities=16% Similarity=0.024 Sum_probs=60.7
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
=.++.|+.|+|||....- .+ . ....+|++||++++..+.+.+.+... +
T Consensus 163 v~~I~G~aGsGKTt~I~~----~~-~-----------~~~~lVlTpT~~aa~~l~~kl~~~~~-------~--------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS----RV-N-----------FEEDLILVPGRQAAEMIRRRANASGI-------I--------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH----HC-C-----------TTTCEEEESCHHHHHHHHHHHTTTSC-------C---------
T ss_pred EEEEEcCCCCCHHHHHHH----Hh-c-----------cCCeEEEeCCHHHHHHHHHHhhhcCc-------c---------
Confidence 346789999999965321 11 1 12459999999999887776643200 0
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeec
Q 007829 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 262 g~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT 339 (588)
.....-|.|-++++. .......-.+++||||||-.+ +. ..+..++...+. .+++++.-+
T Consensus 211 ------------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ------------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ------------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred ------------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 001233667665532 122222234789999999854 33 344444454443 555555444
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.94 E-value=0.019 Score=52.80 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=27.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|+=.++.+++|||||.+.+-.+.+. .. .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~-~~----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA-KI----------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH-HH----------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HH----------CCCEEEEEEecc
Confidence 34556778999999997755443333 22 477899998873
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.93 E-value=0.01 Score=55.35 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=26.7
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
|+=.++.+++|||||...+--+.++. . .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-~----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-F----------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-H----------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-H----------CCCEEEEEEeccC
Confidence 44446789999999977555444432 2 4778999999753
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.90 E-value=0.011 Score=54.09 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=26.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|+=.++.+++|+|||...+-.+... .. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~-~~----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY-KL----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH-HH----------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH-HH----------CCCeEEEEeecc
Confidence 35557889999999997754333322 22 356788988883
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.077 Score=52.80 Aligned_cols=21 Identities=10% Similarity=-0.175 Sum_probs=16.9
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.+.++++.||+|+|||.+.-.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999976533
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.77 E-value=0.043 Score=54.86 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.5
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999654
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.69 E-value=0.01 Score=56.10 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=50.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.+++|+|||.+.+-.+... .. .+.+++++.|...-. . ...+...+ ++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~----------~g~kVli~~~~~d~r---~--~~~i~srl------G~---- 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY----------ADVKYLVFKPKIDTR---S--IRNIQSRT------GT---- 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH----------TTCCEEEEEECCCGG---G--CSSCCCCC------CC----
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh----------cCCEEEEEEeccCch---H--HHHHHHhc------CC----
Confidence 45556778999999997754444333 22 466788887764210 0 00111111 10
Q ss_pred EEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccc
Q 007829 259 CIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~ 312 (588)
.. ..+-+.+...+.+.+... ..-..+++|||||++.+.
T Consensus 65 -----~~----------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 65 -----SL----------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -----SS----------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC
T ss_pred -----Cc----------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc
Confidence 00 123355666666666543 223457899999999753
No 114
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.35 E-value=0.09 Score=55.05 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=24.9
Q ss_pred CcceeeecCCcccccC-CCHHHHHHHHHhhhh-cceEEEEeeccc
Q 007829 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFKA-QRQTLLFSATMP 341 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~-~~q~l~~SAT~~ 341 (588)
..++|++||+|.+.+. .....+..++..+.. ..++|+.|...+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 5679999999998763 223444455544333 345555444333
No 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.35 E-value=0.081 Score=54.98 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=36.1
Q ss_pred CCcceeeecCCcccc---cCCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHh
Q 007829 298 DNCRYLTLDEADRLV---DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lIvDEah~l~---~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++||+|++-++. +..+...+..+...+.+..-++.++|+......+.+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 578899999998754 333445666666666666667778888765554544443
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.34 E-value=0.029 Score=52.80 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=28.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|+=.++.+++|||||...+--+.++. ..|.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-----------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-----------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-----------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-----------HCCCeEEEEeecC
Confidence 456667789999999977554444432 2577889998875
No 117
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.30 E-value=0.023 Score=63.13 Aligned_cols=71 Identities=24% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007829 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.+++-|.+++.. .+..+++.|+.|||||.+..--+...+.... -....+|+|+.|+..|.++.+.+.+.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 3678999999999999775554444443321 1234799999999999999999988753
No 118
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.24 E-value=0.038 Score=61.86 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++-|.+++.. ....+++.|+.|||||.+..--+...+.+.. -....+|+|+.|+..|.++.+.+.+++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-------~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-------VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999875 4578999999999999775544444433211 123468999999999999999988875
Q ss_pred h
Q 007829 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 81 ~ 81 (724)
T 1pjr_A 81 G 81 (724)
T ss_dssp G
T ss_pred c
Confidence 3
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.94 E-value=0.21 Score=48.34 Aligned_cols=18 Identities=22% Similarity=0.078 Sum_probs=15.3
Q ss_pred CCEEEEecCCchHhHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~ 198 (588)
+.+++.||+|+|||.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999996643
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.82 E-value=0.12 Score=47.60 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=15.1
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
+.+++.||+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999664
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.68 E-value=0.042 Score=51.80 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 122
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.51 E-value=0.035 Score=51.66 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=26.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
.|.=.++.+++|||||...+-. +..+.. .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~----------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY----------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH----------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH----------cCCceEEEEeccC
Confidence 3555678899999999654333 333322 4677899998743
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.49 E-value=0.18 Score=49.97 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.3
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
++++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6899999999999996543
No 124
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.47 E-value=0.055 Score=64.32 Aligned_cols=73 Identities=29% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+|+-|.++|..- ++++++.|..|||||.+.+--++..+.... .+-....+|+|++|+..|..+.+.+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-----~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-----NPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-----SCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999999764 889999999999999876555555443310 01133479999999999999999888754
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.46 E-value=0.053 Score=49.67 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=26.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+=.++.+++|||||.-.+- ++..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~-~i~n~~~----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMR-RVRRFQI----------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHH----------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHH-HHHHHHH----------cCCeEEEEccc
Confidence 456668889999999955333 3333222 35678999887
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.34 E-value=0.066 Score=58.50 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 165 QPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~--g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+|.-|.+++..++. ..-.++.|+-|.|||.+.-+.+-. + . ..++|.+|+.+-+..+. .+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~-~------------~~~~vtAP~~~a~~~l~----~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-I-A------------GRAIVTAPAKASTDVLA----QF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-S-S------------SCEEEECSSCCSCHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-H-H------------hCcEEECCCHHHHHHHH----HH
Confidence 689999999998885 334788899999999554443322 1 1 13699999988766433 23
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeeecCCcccccCCCHHHHHH
Q 007829 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~~~~i~~ 322 (588)
... .|-+..|+.+.. .+..+++||||||=.+- .+.+..
T Consensus 237 ~~~-------------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ 274 (671)
T 2zpa_A 237 AGE-------------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQ 274 (671)
T ss_dssp HGG-------------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHH
T ss_pred hhC-------------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHH
Confidence 210 133446754321 23468999999998763 356666
Q ss_pred HHHhhhhcceEEEEeecc
Q 007829 323 VFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~ 340 (588)
++..++ .++||.|.
T Consensus 275 ll~~~~----~v~~~tTv 288 (671)
T 2zpa_A 275 LVSRFP----RTLLTTTV 288 (671)
T ss_dssp HHTTSS----EEEEEEEB
T ss_pred HHhhCC----eEEEEecC
Confidence 665432 57777776
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.07 E-value=0.53 Score=43.16 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=23.0
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
..-.+||+||+|.+... ....+..++........+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999998642 1234444555444444444443
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.05 E-value=0.19 Score=51.20 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=14.1
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 129
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.02 E-value=0.25 Score=45.20 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCCcceeeecCCcccccCCC--HHHHHHHHHhhhhcceEEEEeeccchHHHHHH
Q 007829 297 LDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~--~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~ 348 (588)
-..+++||+||+-..+..++ .+.+..++..-+...-+|+.+--+|+.+.+.+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 36789999999987665553 24566666665556667777777777766654
No 130
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.95 E-value=0.1 Score=58.67 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=65.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-ccCCCCCCcceEE
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-SKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~-~~GlDip~v~~VI 467 (588)
.+.+++|.++++.-+..+++.+... |+.+..+||+++..+|...+..+.+|..+|+|+|... ...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 3579999999999888888777643 7999999999999999999999999999999999643 4668888898888
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.81 E-value=0.26 Score=50.02 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.++.+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4578999999999999654
No 132
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.80 E-value=0.22 Score=44.46 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
.+++++.||+|+|||.+.
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 568999999999999654
No 133
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.44 E-value=0.64 Score=42.37 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
++++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+|+| +.+. .+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~G 117 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KG 117 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cC
Confidence 457999999999999988888776 67889999998766554333 2 357999999 4544 46
Q ss_pred CCCCCcceeeec
Q 007829 295 MNLDNCRYLTLD 306 (588)
Q Consensus 295 ~~l~~~~~lIvD 306 (588)
+++..+++||.=
T Consensus 118 ldi~~v~~VI~~ 129 (191)
T 2p6n_A 118 LDFPAIQHVINY 129 (191)
T ss_dssp CCCCCCSEEEES
T ss_pred CCcccCCEEEEe
Confidence 678888888763
No 134
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.30 E-value=0.29 Score=49.01 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHHH
Q 007829 166 PTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 166 p~~~Q~~~i~~il----~g~---dvi~~a~TGsGKTl~~~l 199 (588)
++|+|.+++..+. +|+ .+++.||.|+|||.++..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 4688888876654 443 389999999999966543
No 135
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.21 E-value=0.56 Score=41.39 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+|+| +.+ ..
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 97 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVA-AR 97 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hc
Confidence 3557999999999999988888775 67899999998766554333 3 357899999 343 34
Q ss_pred cCCCCCcceeeecC
Q 007829 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lIvDE 307 (588)
++++..+++||.-.
T Consensus 98 Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 98 GIDIENISLVINYD 111 (163)
T ss_dssp TCCCSCCSEEEESS
T ss_pred CCchhcCCEEEEeC
Confidence 67778888887644
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.17 E-value=0.62 Score=48.39 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=32.8
Q ss_pred CcceeeecCCcccccC-CCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHhc
Q 007829 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l 352 (588)
.+++||||.+-++... .....+..+.....+..-++.+.||......+.+..+.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 4678999998765421 12234455555555555677788887666555555443
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.90 E-value=0.54 Score=49.28 Aligned_cols=39 Identities=18% Similarity=0.004 Sum_probs=24.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
.|.-+++.|++|+|||...+-.+...+.. .|..++|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~----------~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK----------TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH----------SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh----------CCCcEEEEEC
Confidence 45677888999999996654444433322 2445777764
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.81 E-value=0.27 Score=49.98 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
.+.+++.||+|+|||.+.
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999664
No 139
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.42 E-value=0.45 Score=47.52 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=15.0
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.++++.||+|+|||.++
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999664
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.34 E-value=1.1 Score=41.96 Aligned_cols=51 Identities=18% Similarity=0.031 Sum_probs=30.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
.|.-+++.|++|+|||...+-.+...+ . .+..++++.-. ....++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~----------~~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K----------MGEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H----------TTCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h----------cCCeEEEEEcc-CCHHHHHHHHHH
Confidence 567789999999999966443333322 2 24456776643 334555555543
No 141
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.24 E-value=0.8 Score=42.44 Aligned_cols=72 Identities=10% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~ 93 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-AR 93 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hc
Confidence 3568999999999999988888776 67899999998876654443 3 347899999 444 35
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
++++..+++||.
T Consensus 94 Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 94 GLDIPQVDLVVH 105 (212)
T ss_dssp SSSCCCBSEEEE
T ss_pred CCCCccCcEEEE
Confidence 677888888874
No 142
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.16 E-value=0.85 Score=45.13 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...++|++||+|.+........+..++...+...++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999862212344555555555555555533
No 143
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.15 E-value=0.56 Score=49.02 Aligned_cols=116 Identities=16% Similarity=0.025 Sum_probs=56.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|++|+|||...+--+...+.. .+..++|+..- .-..|+..++......+ ....++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~----------~g~~vl~~slE-~~~~~l~~R~~~~~~~i---~~~~l~--- 261 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK----------EGVGVGIYSLE-MPAAQLTLRMMCSEARI---DMNRVR--- 261 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT----------TCCCEEEEESS-SCHHHHHHHHHHHHTTC---CTTTCC---
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEECC-CCHHHHHHHHHHHHcCC---CHHHHh---
Confidence 45667888999999996554444433322 24457776543 22344444443222111 111121
Q ss_pred EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeeecCCcccccC
Q 007829 259 CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~~ 314 (588)
.|..+..+. ...+. ...+.+- |+..+...+.+-.. -..+++||||..+.|...
T Consensus 262 -~g~l~~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 262 -LGQLTDRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp -GGGCCHHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred -CCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 122221111 11122 2345553 44555444332110 125789999999998753
No 144
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.03 E-value=0.89 Score=40.08 Aligned_cols=74 Identities=9% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+...+... ++.+..++|+.+..++...+ . ....|+||| +.+ ..
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 92 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-AR 92 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chh-hc
Confidence 3567999999999999988887765 67889999998766554333 2 357899999 333 34
Q ss_pred cCCCCCcceeeecC
Q 007829 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lIvDE 307 (588)
++++..+++||.-.
T Consensus 93 G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 93 GIDVQQVSLVINYD 106 (165)
T ss_dssp TCCCCSCSEEEESS
T ss_pred CCCcccCCEEEEeC
Confidence 66778888877643
No 145
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.02 E-value=0.63 Score=41.55 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++..+..+...+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~ 96 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVC-AR 96 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSC-CT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cch-hc
Confidence 4568999999999999888877664 67899999998776654433 3 357999999 333 45
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
++++..+++||.
T Consensus 97 Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 97 GIDVKQVTIVVN 108 (175)
T ss_dssp TTCCTTEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 677888888885
No 146
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.95 E-value=0.39 Score=49.45 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=63.7
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc----cCCCCCCcc
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS----KGLDFPDIQ 464 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~----~GlDip~v~ 464 (588)
..++++||.+|++.-+..+++.+.. .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-+++.+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 4567999999999999999999988 588999999999999999999999999999999996321 124555677
Q ss_pred eEE
Q 007829 465 HVI 467 (588)
Q Consensus 465 ~VI 467 (588)
+||
T Consensus 142 ~iV 144 (414)
T 3oiy_A 142 FVF 144 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 147
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.78 E-value=0.22 Score=49.00 Aligned_cols=19 Identities=32% Similarity=0.235 Sum_probs=15.8
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
+.++++.||+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999996653
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.75 E-value=0.37 Score=48.79 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999654
No 149
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.19 E-value=0.81 Score=40.79 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+||| +.+ ..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~ 93 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLF-GR 93 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----SCC-ST
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-----Cch-hc
Confidence 3567999999999999988888775 67889999998766554433 2 357999999 333 34
Q ss_pred cCCCCCcceeeecC
Q 007829 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lIvDE 307 (588)
++++..+++||.-+
T Consensus 94 Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 94 GMDIERVNIAFNYD 107 (172)
T ss_dssp TCCGGGCSEEEESS
T ss_pred CcchhhCCEEEEEC
Confidence 66777888887643
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.94 E-value=0.54 Score=47.20 Aligned_cols=43 Identities=12% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeecc
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
....+++|+||+|.| +......+..++...+....+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 346789999999995 3333355566666555555455554443
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.55 E-value=0.73 Score=48.14 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.++++.||+|+|||.++
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999664
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.54 E-value=1.3 Score=40.93 Aligned_cols=21 Identities=24% Similarity=0.206 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.|.-+++.+|+|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 466788899999999955433
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.44 E-value=1.3 Score=43.55 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=24.4
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccch
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
....+||+||+|.+.... ...+..++...+....+++ +++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~-~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFIL-SCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEE-EESCGG
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEE-EeCCcc
Confidence 456799999999986422 2334444444444444444 444443
No 154
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.23 Score=50.83 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAK-G--IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~-g--~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|++.+=-....+.|++. - +..|--++.-.+ --.+.+++.||.|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 446888887556666666554 1 122222222111 13478999999999999664
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.29 E-value=1 Score=44.87 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=23.0
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+|++||+|.+.... ...+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 355799999999986431 234444555444444455443
No 156
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.17 E-value=0.35 Score=48.44 Aligned_cols=50 Identities=16% Similarity=-0.043 Sum_probs=29.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|.=+++.|++|+|||...+-.+...+. .+..++|++.- .-..|+..++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~-----------~g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN-----------DDRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-----------TTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeCC-CCHHHHHHHHH
Confidence 4566788899999999655444443332 24567777643 33445544443
No 157
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.84 E-value=1.9 Score=40.33 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=17.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~ 201 (588)
.|.-+.+.+|+|+|||......+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45778899999999996654433
No 158
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.64 E-value=0.99 Score=44.50 Aligned_cols=45 Identities=7% Similarity=0.176 Sum_probs=25.1
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
....+++||||||.|..... +.+.+.+..-+... ++++.++-|..
T Consensus 80 ~~~~kvviIdead~lt~~a~-naLLk~LEep~~~t-~fIl~t~~~~k 124 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYA-VIVLNTRRWHY 124 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTE-EEEEEESCGGG
T ss_pred cCCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCe-EEEEEECChHh
Confidence 35678999999999865321 33344444333333 44444454433
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.59 E-value=0.7 Score=45.63 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
...+++.||+|+|||.++
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 478999999999999654
No 160
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.44 E-value=0.63 Score=45.52 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=17.2
Q ss_pred cCCCEEEEecCCchHhHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp 200 (588)
.|.-++++|++|+|||......
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHH
Confidence 5777889999999999654443
No 161
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.11 E-value=1.8 Score=42.39 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.++-+++++++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467788899999999966443
No 162
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=88.66 E-value=1.3 Score=40.08 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHh-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVK-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++. ..+. ....|+|+| +.+ ..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~ 108 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVA-AR 108 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----------TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-----
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chh-hc
Confidence 4668999999999999988877764 67888999987654433 2233 357899999 343 34
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
++++..+++||.
T Consensus 109 Gldi~~~~~VI~ 120 (185)
T 2jgn_A 109 GLDISNVKHVIN 120 (185)
T ss_dssp --CCCSBSEEEE
T ss_pred CCCcccCCEEEE
Confidence 567778888776
No 163
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.39 E-value=1 Score=52.96 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=65.1
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-ccccCCCCCCcceE
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-VASKGLDFPDIQHV 466 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~~GlDip~v~~V 466 (588)
..+.+++|.|+++.-+...++.+... ++.+..+++..+..++...++.+.+|..+|+|+|. .+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 34668999999999998888887643 67899999999999999999999999999999995 45566888888887
Q ss_pred E
Q 007829 467 I 467 (588)
Q Consensus 467 I 467 (588)
|
T Consensus 730 I 730 (1151)
T 2eyq_A 730 I 730 (1151)
T ss_dssp E
T ss_pred E
Confidence 7
No 164
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.05 E-value=1.9 Score=44.01 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+ . ...+|+||| +.+. .
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~ 338 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-R 338 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-T
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-c
Confidence 5678999999999999988888765 67889999998866554333 2 357899999 5544 4
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
++++..+++||.
T Consensus 339 Gidip~v~~Vi~ 350 (417)
T 2i4i_A 339 GLDISNVKHVIN 350 (417)
T ss_dssp TSCCCCEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 677888888875
No 165
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.92 E-value=0.95 Score=52.94 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=64.8
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc-c---CCCCCCcc
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS-K---GLDFPDIQ 464 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~-~---GlDip~v~ 464 (588)
..+.++||.+|++.-+..+++.|.. .++.+..+||+.+..+|...++.+..|..+|+|+|.-.- . -+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4677999999999999999999988 578999999999998999999999999999999996321 1 15567788
Q ss_pred eEEe
Q 007829 465 HVIN 468 (588)
Q Consensus 465 ~VI~ 468 (588)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.91 E-value=1.9 Score=42.86 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=32.0
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH-HHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL-ARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L-a~Q~~~~~~~~ 242 (588)
.|.-+++.|++|+|||...+-.+........ ..+.+..++|+.--..+ ..++...+.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-----~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-----KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-----GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999665443332211100 01125578888755432 34444444443
No 167
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.72 E-value=2 Score=45.17 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=38.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.|....+.+-||||||++ ++.+. .. .+..+|||+|+...|.|+++.+..|+
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~---~~---------~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIA---ER---------HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHH---HH---------SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHH--HHHHH---HH---------hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 456788899999999954 33222 11 23347999999999999999999885
No 168
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.56 E-value=2.3 Score=39.18 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=53.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c-----ccCCCCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A-----SKGLDFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~-----~~GlDip~ 462 (588)
..++||.|+++.-+..+++.+... ++.+..++|+.+...... .+..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998888765 788999999988765543 345677899999952 1 23456677
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 169
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.53 E-value=4.9 Score=42.93 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+++.+...+. .++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~ 404 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-AR 404 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TS
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chh-hc
Confidence 467899999999999999998887753 267889999998776654333 2 458999999 444 45
Q ss_pred cCCCCCcceeeecCC
Q 007829 294 KMNLDNCRYLTLDEA 308 (588)
Q Consensus 294 ~~~l~~~~~lIvDEa 308 (588)
++++..+++||.-..
T Consensus 405 GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 405 GMDFPNVHEVLQIGV 419 (563)
T ss_dssp SCCCTTCCEEEEESC
T ss_pred CCCcccCCEEEEECC
Confidence 778888888885543
No 170
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=87.36 E-value=2.1 Score=42.06 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=54.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
+..+||.|+|+.-+..+.+.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ...
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~G 91 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARG 91 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcC
Confidence 567999999999988887777654 67899999998776654443 2 357899999 444 346
Q ss_pred CCCCCcceeee
Q 007829 295 MNLDNCRYLTL 305 (588)
Q Consensus 295 ~~l~~~~~lIv 305 (588)
+++..+++||.
T Consensus 92 idi~~v~~VI~ 102 (300)
T 3i32_A 92 LDIPQVDLVVH 102 (300)
T ss_dssp TTCCCCSEEEE
T ss_pred ccccceeEEEE
Confidence 77888888874
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.13 E-value=0.89 Score=55.79 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=33.7
Q ss_pred HHHHhc------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 174 LPVVLS------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 174 i~~il~------g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
+..++. ++++++.+|+|+|||..+...+.... ..|.+++|+..--.+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-----------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-----------TTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-----------HcCCcEEEEEccccc
Confidence 566665 78999999999999987655544433 246778888866443
No 172
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.80 E-value=0.84 Score=43.01 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=29.3
Q ss_pred CCcceeeecCCccccc-----CCCHHHHHHHHHhhhhcceEEEEeeccchH
Q 007829 298 DNCRYLTLDEADRLVD-----LGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~-----~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
...++|++||.-.+++ ......+..++..+...-.+++++......
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4567899999988875 333344667777665544566666655444
No 173
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.73 E-value=1.8 Score=43.16 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEE
Q 007829 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLF 336 (588)
Q Consensus 298 ~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~ 336 (588)
...+++|+||+|.|.... ...+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 457899999999986432 24455555555555555444
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.65 E-value=4.3 Score=37.05 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCchHhHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp 200 (588)
.|.-+++.+++|+|||..+...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4567788999999999665443
No 175
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.61 E-value=3.7 Score=40.49 Aligned_cols=52 Identities=8% Similarity=-0.098 Sum_probs=31.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.=+++.|++|+|||...+-.+...+. .+..++|++-- .-..|+..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-----------~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-----------NDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEECC-CCHHHHHHHHHHH
Confidence 5667888899999999654443333321 23567777643 3445555555443
No 176
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.07 E-value=0.81 Score=49.14 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999654
No 177
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.06 E-value=6.8 Score=42.11 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+++.+...+. .++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~-~~ 353 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-AR 353 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TS
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chh-hc
Confidence 467899999999999999998887653 267888999998776554333 2 357999999 444 34
Q ss_pred cCCCCCcceeeecCCc
Q 007829 294 KMNLDNCRYLTLDEAD 309 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah 309 (588)
++++..+++||.-..-
T Consensus 354 GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 354 GMDFPNVHEVLQIGVP 369 (579)
T ss_dssp SCCCTTCCEEEEESCC
T ss_pred CCCcccCCEEEEcCCC
Confidence 7778889988865543
No 178
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.93 E-value=0.95 Score=47.85 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
..+.+++.||+|+|||+++
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3468999999999999764
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.89 E-value=1.6 Score=44.01 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=26.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.|.-+++.+|+|+|||... +.++..+.. .+..++|+..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~----------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQK----------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHH----------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh----------cCCeEEEEeccccc
Confidence 3567888899999999654 333333322 34567787665433
No 180
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.89 E-value=1.4 Score=44.88 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=13.7
Q ss_pred CCEEE--EecCCchHhHHH
Q 007829 181 RDMIG--IAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~--~a~TGsGKTl~~ 197 (588)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45777 799999999654
No 181
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.88 E-value=0.61 Score=40.13 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=17.2
Q ss_pred HhcCCCEEEEecCCchHhHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~ 196 (588)
+..+.++++.+++|+|||.+
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44678999999999999965
No 182
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.64 E-value=1.4 Score=43.20 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=22.1
Q ss_pred CcceeeecCCcccccCCCHHHHHHHHHhhhhcceEEEEe
Q 007829 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+|||||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999986432 123344444444444455444
No 183
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.37 E-value=2.3 Score=39.97 Aligned_cols=72 Identities=8% Similarity=0.156 Sum_probs=53.7
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-----ccc-cCCCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-----VAS-KGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~-----~~~-~GlDip~ 462 (588)
.+.++||.++++.-+..+++.+.. .++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999998888777754 38899999999987766554432 478999995 222 3467778
Q ss_pred cceEEe
Q 007829 463 IQHVIN 468 (588)
Q Consensus 463 v~~VI~ 468 (588)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888773
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.36 E-value=11 Score=36.08 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.4
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~~lp~ 201 (588)
+..|.-+++.+|+|+|||......+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4477889999999999996654443
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.35 E-value=1.2 Score=47.59 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=15.0
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
+.+++.||+|+|||.++
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999664
No 186
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.30 E-value=0.61 Score=40.22 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=17.4
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~ 197 (588)
..+.++++.+|+|+|||.++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999664
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.01 E-value=0.85 Score=47.37 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=32.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
...+++++|+||||||... .+++..++. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----------CCCcEEEEeCCCchhH
Confidence 4579999999999999763 344444443 3567888999988854
No 188
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=84.35 E-value=6.5 Score=39.74 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 328 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-AR 328 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccc-cc
Confidence 4568999999999999988888775 67788999998776654433 3 357899999 343 45
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
++++..+++||.
T Consensus 329 Gidip~~~~Vi~ 340 (412)
T 3fht_A 329 GIDVEQVSVVIN 340 (412)
T ss_dssp SCCCTTEEEEEE
T ss_pred CCCccCCCEEEE
Confidence 778888998884
No 189
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.24 E-value=7.2 Score=37.97 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.++-+.+++++|+|||.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456677889999999965433
No 190
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=83.67 E-value=2.5 Score=42.03 Aligned_cols=74 Identities=12% Similarity=0.343 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ...+|+|+| +.+. .
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~ 300 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMS-R 300 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHH-H
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-c
Confidence 4667999999999999988888775 67888999988766554333 2 357899999 3443 3
Q ss_pred cCCCCCcceeeecC
Q 007829 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lIvDE 307 (588)
++++..+++||.-.
T Consensus 301 Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 301 GIDVNDLNCVINYH 314 (367)
T ss_dssp HCCCSCCSEEEESS
T ss_pred CCCcccCCEEEEec
Confidence 56777888887543
No 191
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=83.52 E-value=1.1 Score=40.33 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHhcCC--CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007829 166 PTPIQVQGLPVVLSGR--DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 166 p~~~Q~~~i~~il~g~--dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
..+-|..++..++..+ =.++.++-|++||...+.-++....+ .|..+.+|+|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----------TTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----------cCeEEEEEcCchHHHHH
Confidence 3467999999987433 45566999999998865555544433 68899999999776554
No 192
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.37 E-value=1.6 Score=46.47 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
.+.+||.++++.-+....+.|...|+.+..+||+.+..++..+...+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46799999999999999999999999999999999999999999999999999999995
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.06 E-value=1.4 Score=47.75 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=54.3
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH--hcCCcEEEEEcC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF--KAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F--~~g~~~VLVaT~ 452 (588)
.+.+||.+|++.-+....+.|...|+.+..++|+++..++..++..+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999999888888 578899999997
No 194
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.87 E-value=4.6 Score=38.16 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----c--ccCCCCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----A--SKGLDFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~--~~GlDip~ 462 (588)
+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|.- + ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999999888877654 78899999998866544333 356889999952 1 14567778
Q ss_pred cceEEe
Q 007829 463 IQHVIN 468 (588)
Q Consensus 463 v~~VI~ 468 (588)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887773
No 195
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.67 E-value=2.3 Score=41.97 Aligned_cols=23 Identities=26% Similarity=0.108 Sum_probs=17.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~ 201 (588)
.|.-+++.+++|+|||...+-.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999996654433
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.56 E-value=2.3 Score=44.28 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=29.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|.=+++.|++|+|||...+--+...+ . .|..++|++-- .-..|+..++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a-~----------~g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS-D----------NDDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH-H----------TTCEEEEECSS-SCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH-H----------cCCEEEEEECC-CCHHHHHHHHH
Confidence 455678889999999965544444333 2 24567777643 33334444443
No 197
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.18 E-value=5.8 Score=39.61 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.6
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999664
No 198
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.65 E-value=0.75 Score=44.26 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=17.0
Q ss_pred HhcCCCEEEEecCCchHhHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~ 197 (588)
+..|.-+.+++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346778899999999999553
No 199
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=81.61 E-value=6.3 Score=39.74 Aligned_cols=73 Identities=11% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ....|+|+| +.+ ..
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~-~~ 320 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLL-TR 320 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCS-SS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----Ccc-cc
Confidence 4568999999999999998888876 67888999988766554333 3 357899999 333 34
Q ss_pred cCCCCCcceeeec
Q 007829 294 KMNLDNCRYLTLD 306 (588)
Q Consensus 294 ~~~l~~~~~lIvD 306 (588)
++++..+++||.-
T Consensus 321 Gidip~~~~Vi~~ 333 (400)
T 1s2m_A 321 GIDIQAVNVVINF 333 (400)
T ss_dssp SCCCTTEEEEEES
T ss_pred CCCccCCCEEEEe
Confidence 6778888888753
No 200
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=81.53 E-value=4.2 Score=40.79 Aligned_cols=77 Identities=8% Similarity=0.174 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ...+|+|+| +.+ ..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 305 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVL-AR 305 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGG-SS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hc
Confidence 4578999999999999988888765 67788999988766554433 3 357899999 333 45
Q ss_pred cCCCCCcceeeecCCcc
Q 007829 294 KMNLDNCRYLTLDEADR 310 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah~ 310 (588)
++++..+++||.-....
T Consensus 306 Gidip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 306 GIDIPTVSMVVNYDLPT 322 (395)
T ss_dssp SCCCTTEEEEEESSCCB
T ss_pred CCCcccCCEEEEcCCCC
Confidence 77888999998765544
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.20 E-value=14 Score=36.58 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=31.6
Q ss_pred CcceeeecCCccccc-CCCHHHHHHHHHhhhhcceEEEEeeccchHHHHHHHHh
Q 007829 299 NCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 299 ~~~~lIvDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++++|.+.++.. ......+..+.+.+.++..++.+.+|....+.+.++.+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 345778888877542 22334555555555566667777777766655555444
No 202
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.15 E-value=4.1 Score=40.98 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ....|+|+| +.+ ..
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~-~~ 312 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLF-GR 312 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-----CCC-SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC-----Chh-hc
Confidence 4678999999999999988888765 67788999988766554333 2 357899999 332 35
Q ss_pred cCCCCCcceeeecCCc
Q 007829 294 KMNLDNCRYLTLDEAD 309 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah 309 (588)
++++..+++||.-...
T Consensus 313 Gidi~~~~~Vi~~~~p 328 (391)
T 1xti_A 313 GMDIERVNIAFNYDMP 328 (391)
T ss_dssp CBCCTTEEEEEESSCC
T ss_pred CCCcccCCEEEEeCCC
Confidence 6778888988875443
No 203
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.08 E-value=3.3 Score=38.72 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=45.9
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-----ccc-cCCCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-----VAS-KGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~-----~~~-~GlDip~ 462 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+... ....+..+..+|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3568999999999999999888764 567888888765433 23455667789999994 222 3366677
Q ss_pred cceEEe
Q 007829 463 IQHVIN 468 (588)
Q Consensus 463 v~~VI~ 468 (588)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777763
No 204
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=80.89 E-value=3.3 Score=45.47 Aligned_cols=78 Identities=8% Similarity=0.288 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+.+.+... ++++..++|+.+..++... +. ...+|+||| +.+ ..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l-~~ 507 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-RE 507 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCC-ST
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chh-hC
Confidence 4678999999999999988888775 6788888988776555444 33 357999999 433 45
Q ss_pred cCCCCCcceeeecCCccc
Q 007829 294 KMNLDNCRYLTLDEADRL 311 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah~l 311 (588)
++++..+++||+-+++..
T Consensus 508 GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADKE 525 (661)
T ss_dssp TCCCTTEEEEEETTTTCC
T ss_pred CcccCCCCEEEEeCcccc
Confidence 777889999999998874
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.71 E-value=11 Score=39.54 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=27.3
Q ss_pred CcceeeecCCcccccC-CCHHHHHHHHHhhh------hcceEEEEeeccchHHHHHHHHh
Q 007829 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFK------AQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 299 ~~~~lIvDEah~l~~~-~~~~~i~~i~~~~~------~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
.++++++|=+-++... .....+..+..... +..-++.++||........++.+
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f 434 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 434 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHH
Confidence 4568888888765321 11123333332221 22235678888776555555544
No 206
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=80.43 E-value=14 Score=32.58 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=50.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
....+.|.|.+...+..+.+.|...|+.+..+.++.. .....|.|+|--.+.|+-+ ++||.+++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 4567999999999999999999999999877766432 1234689999999999987 56666554
No 207
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=80.14 E-value=4.7 Score=40.29 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=34.0
Q ss_pred HHHHh-----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH-HHHHHHHHHH
Q 007829 174 LPVVL-----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL-ARQTYEVVEQ 241 (588)
Q Consensus 174 i~~il-----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L-a~Q~~~~~~~ 241 (588)
+..++ .|.-+++.|++|+|||...+-.+...... +...+.+..++|+.-...+ ..++...+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~-----~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP-----GAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC-----BTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-----cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55555 34667889999999996544333321110 1111235678888765432 3344444443
No 208
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.13 E-value=5.6 Score=41.04 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=52.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcccCC
Q 007829 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~~~ 296 (588)
.+||.|+|+.-|..+++.+.+. ++.+..++|+.+..++...+ + ...+|+||| +.+ ..+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~-~rGlD 365 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVA-SRGLD 365 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGG-TSSCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhh-hCCCC
Confidence 3999999999999988887765 67889999998766554433 3 357999999 443 45777
Q ss_pred CCCcceeee
Q 007829 297 LDNCRYLTL 305 (588)
Q Consensus 297 l~~~~~lIv 305 (588)
+..+++||.
T Consensus 366 i~~v~~VI~ 374 (434)
T 2db3_A 366 IKNIKHVIN 374 (434)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 888888875
No 209
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.01 E-value=4.2 Score=36.74 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=52.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----c-ccCCCCCCcc
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----A-SKGLDFPDIQ 464 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~-~~GlDip~v~ 464 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+.......+. ...+|+|+|.- + ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999998776 467888999887654433332 25789999952 1 1346677777
Q ss_pred eEEe
Q 007829 465 HVIN 468 (588)
Q Consensus 465 ~VI~ 468 (588)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 210
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.61 E-value=2.9 Score=38.94 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=49.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c----cc--CCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A----SK--GLDFP 461 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~----~~--GlDip 461 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ +..+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999999888765 47889999987755443332 46789999952 1 11 35666
Q ss_pred CcceEE
Q 007829 462 DIQHVI 467 (588)
Q Consensus 462 ~v~~VI 467 (588)
++++||
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 677666
No 211
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.56 E-value=4.3 Score=36.69 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cc-cCCCCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----AS-KGLDFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~~-~GlDip~ 462 (588)
+.++||.++++.-+..+++.+... +..+..++|+.+..+.... + .+..+|+|+|.- +. ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999988888654 6788999999886554322 2 356789999962 12 2346667
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 212
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.42 E-value=2.6 Score=42.37 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.++++.+|+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999764
No 213
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=79.41 E-value=4.9 Score=40.78 Aligned_cols=71 Identities=8% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
..++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+|+| +.+ ..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~G 339 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----------NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVW-ARG 339 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGG-SSS
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hCc
Confidence 458999999999999988888765 67788999998766554333 2 357899999 333 456
Q ss_pred CCCCCcceeee
Q 007829 295 MNLDNCRYLTL 305 (588)
Q Consensus 295 ~~l~~~~~lIv 305 (588)
+++..+++||.
T Consensus 340 idi~~v~~Vi~ 350 (410)
T 2j0s_A 340 LDVPQVSLIIN 350 (410)
T ss_dssp CCCTTEEEEEE
T ss_pred CCcccCCEEEE
Confidence 78888888885
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.34 E-value=2.6 Score=47.20 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHC-CC--CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAK-GI--VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~-g~--~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|++.+--..+.+.|.+. -+ ..|..++.-. +...+.+++.+|.|+|||+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 456788988888888888766 22 1221111100 112467999999999999654
No 215
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.16 E-value=49 Score=32.16 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=29.2
Q ss_pred ChHHHHHHHHcccCCCCCcceeeecCCccccc---CCCHHHHHHHHHhhhhcceEEEEeecc
Q 007829 282 TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD---LGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 282 Tp~~l~~~l~~~~~~l~~~~~lIvDEah~l~~---~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
+...+.+.+..... .--+|||||+|.+.. ..+...++.+....+ .. .++++++.
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~~ 179 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGSE 179 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEESS
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcCc
Confidence 34455555543211 234799999999864 345455555554432 23 34445443
No 216
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=79.14 E-value=3.2 Score=38.58 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFP 461 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~------~~GlDip 461 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+..++...+ ...+|+|+|.-- ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999999888764 67889999999876654433 357899999631 1345566
Q ss_pred CcceEE
Q 007829 462 DIQHVI 467 (588)
Q Consensus 462 ~v~~VI 467 (588)
++++||
T Consensus 166 ~~~~lV 171 (230)
T 2oxc_A 166 SIRLFI 171 (230)
T ss_dssp GCCEEE
T ss_pred cCCEEE
Confidence 666665
No 217
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.94 E-value=3.1 Score=38.47 Aligned_cols=72 Identities=13% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc------cccCCCCCCc
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK---GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV------ASKGLDFPDI 463 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~------~~~GlDip~v 463 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+...+... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4668999999999999999988774 7888999998775544333 22 34789999952 1235667777
Q ss_pred ceEEe
Q 007829 464 QHVIN 468 (588)
Q Consensus 464 ~~VI~ 468 (588)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77763
No 218
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.77 E-value=2.6 Score=44.71 Aligned_cols=40 Identities=25% Similarity=0.095 Sum_probs=27.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHH
Q 007829 155 LKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvi~~a~TGsGKTl~ 196 (588)
+..|.+.| .+++.+...+.. +..|..++++||||||||..
T Consensus 236 ~~~l~~~G--~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKG--TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTT--SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34455555 344555555554 34788999999999999954
No 219
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=78.38 E-value=5.6 Score=43.69 Aligned_cols=78 Identities=12% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hhc-CCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VKR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+|+..+..+.+.+... ++++..++|+.+..++... +.. ..+|+||| +.+ ..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~ 501 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-RE 501 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hc
Confidence 4678999999999999988888775 6788888988776655444 333 47999999 343 45
Q ss_pred cCCCCCcceeeecCCccc
Q 007829 294 KMNLDNCRYLTLDEADRL 311 (588)
Q Consensus 294 ~~~l~~~~~lIvDEah~l 311 (588)
++++..+++||+=+++..
T Consensus 502 GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 502 GLDIPEVSLVAILDADKE 519 (664)
T ss_dssp TCCCTTEEEEEETTTTSC
T ss_pred CccCCCCCEEEEeCCccc
Confidence 677889999998888764
No 220
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.32 E-value=5.6 Score=45.12 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.6
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
..+++++||+|+|||.+.-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 4589999999999996543
No 221
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.56 E-value=0.44 Score=42.42 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+||| +.+ ..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~ 92 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVA-AR 92 (170)
Confidence 3567999999999999888777665 66788888887665543333 2 246899999 343 33
Q ss_pred cCCCCCcceeeec
Q 007829 294 KMNLDNCRYLTLD 306 (588)
Q Consensus 294 ~~~l~~~~~lIvD 306 (588)
++++..+++||.-
T Consensus 93 Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 93 GIDIPDVSHVFNF 105 (170)
Confidence 5566777777653
No 222
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.42 E-value=9.8 Score=39.06 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc--------CcchHHHHH---HHh-cCCcEEEeChHH
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG--------GVDMRSQLE---VVK-RGVHIVVATPGR 285 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g--------g~~~~~~~~---~l~-~~~~IvV~Tp~~ 285 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++| +.+..++.. .+. ....|+|+|
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T--- 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT--- 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC---
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC---
Confidence 4678999999999999888887775 677888888 555444433 233 347899999
Q ss_pred HHHHHHcccCCCCCcceeeecCCc
Q 007829 286 LKDMLAKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 286 l~~~l~~~~~~l~~~~~lIvDEah 309 (588)
+.+ ..++++..+++||+-+..
T Consensus 427 --~~~-~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 427 --SVG-EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp --GGG-GGGGGSTTCCEEEESSCC
T ss_pred --Ccc-ccCCCchhCCEEEEeCCC
Confidence 333 457788888888865443
No 223
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.41 E-value=8.3 Score=36.62 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-----cc--ccCCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-----VA--SKGLDFP 461 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~-----~~--~~GlDip 461 (588)
.+.++||.++++.-+..+++.+... +..+..++|+......... +..| .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4668999999999999998888764 6778889998876654433 3334 78999994 11 2356778
Q ss_pred CcceEEe
Q 007829 462 DIQHVIN 468 (588)
Q Consensus 462 ~v~~VI~ 468 (588)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8887773
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.30 E-value=0.98 Score=46.81 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 140 PPIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
.|-.+|++.+--+.+.+.|.+. -+..|.-++...++ -.+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 4667899998777777777654 12233333332221 3478999999999999664
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.94 E-value=2.2 Score=43.02 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.8
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.+.-+++++|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455788999999999954
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.37 E-value=22 Score=36.52 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.++-+.+++++|+|||.+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345577789999999966443
No 227
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.19 E-value=4.4 Score=47.15 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=58.2
Q ss_pred hhcCCCCEEEEeCccccHHHHHHHHHHc----CC----cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-cccCCC-
Q 007829 390 LQKTPPPVLIFCENKADVDDIHEYLLLK----GV----EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-ASKGLD- 459 (588)
Q Consensus 390 l~~~~~~viIF~~s~~~~~~l~~~L~~~----g~----~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~~~GlD- 459 (588)
+...+.++||.++++.-+..+++.+... ++ .+..+||+.+..++....+.+.+ .+|+|+|.- +..-+.
T Consensus 95 ~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 95 LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp HHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT
T ss_pred HhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH
Confidence 3345679999999999999988888653 56 78999999999888777777777 899999962 222222
Q ss_pred CCCcceEE
Q 007829 460 FPDIQHVI 467 (588)
Q Consensus 460 ip~v~~VI 467 (588)
+..+++||
T Consensus 173 L~~l~~lV 180 (1054)
T 1gku_B 173 LGHFDFIF 180 (1054)
T ss_dssp SCCCSEEE
T ss_pred hccCCEEE
Confidence 55777777
No 228
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.17 E-value=2.6 Score=38.85 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
+..-+.-|..++..+..|.-+.+++|.|||||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33345567788888889999999999999999654
No 229
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=75.75 E-value=5 Score=39.59 Aligned_cols=42 Identities=14% Similarity=-0.018 Sum_probs=27.6
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
-+.+.+|.|+|||...+-.+.. +... +.+.+++|+..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~-~~~~--------g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS-YMRQ--------YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH-HHHH--------CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHH-HHhc--------CCCceEEEEeccchhh
Confidence 4788899999999665444333 3321 2366889988765553
No 230
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.60 E-value=6.2 Score=48.59 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=32.0
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY 236 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~ 236 (588)
.|+++++.+++|+|||..+...+...+ . .|.+++|+. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~-k----------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R----------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T----------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-H----------cCCeEEEEE-ccccHHHHH
Confidence 568999999999999977655555443 2 466777775 345555555
No 231
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.29 E-value=3.4 Score=43.70 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
+..-...-..++..+..+.++++.||+|+|||..+
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 44444444555666778999999999999999653
No 232
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.27 E-value=11 Score=35.44 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=50.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c-----ccCCCCCCc
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A-----SKGLDFPDI 463 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~-----~~GlDip~v 463 (588)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999888887654 57788899988765443322 346789999962 1 134567778
Q ss_pred ceEE
Q 007829 464 QHVI 467 (588)
Q Consensus 464 ~~VI 467 (588)
++||
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8777
No 233
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=74.25 E-value=4 Score=42.34 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=46.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
+.++||+||+++-|..+++.+... ++++..++|. ........+. ...+|+||| +.+. ..+++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----------~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e-~GiDi 239 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----------GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAE-MGANL 239 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----------TCCEEECCSS-SCC--------CCCSEEEES-----SSTT-CCTTC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----------CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhh-eeecc
Confidence 567999999999999988888775 6778888884 2333334444 357999999 4443 45667
Q ss_pred CCcceee
Q 007829 298 DNCRYLT 304 (588)
Q Consensus 298 ~~~~~lI 304 (588)
. +++||
T Consensus 240 p-v~~VI 245 (440)
T 1yks_A 240 C-VERVL 245 (440)
T ss_dssp C-CSEEE
T ss_pred C-ceEEE
Confidence 7 77776
No 234
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.77 E-value=21 Score=36.34 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=29.4
Q ss_pred HHHHHh-----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 173 GLPVVL-----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 173 ~i~~il-----~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.+..++ .|.-+.+++|+|+|||......++..+. .+...+.+..++++.-.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~-----p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI-----PLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTS-----CGGGTCCSSEEEEEESS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhcc-----CcccCCCCCcEEEEeCC
Confidence 455555 4567889999999999665433332211 11111235567877643
No 235
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=73.54 E-value=2.5 Score=43.06 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=28.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+.+++++++||||||...-.-+. .+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~-~~~~----------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL-REYM----------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH-HHHT----------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH-HHHH----------CCCEEEEEeCCcCH
Confidence 567999999999999965433322 2222 35678888887654
No 236
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=73.47 E-value=2.8 Score=39.17 Aligned_cols=53 Identities=25% Similarity=0.171 Sum_probs=30.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.|++|+|||...+--+.+.+.. .+..++|+.-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~----------~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE----------YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH----------HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------cCCCceeeccc-CCHHHHHHHHHHc
Confidence 45678899999999996544333333333 23446666533 3345555555443
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.45 E-value=1.8 Score=38.65 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|+-++++||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999653
No 238
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.11 E-value=5.2 Score=48.46 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=73.0
Q ss_pred HHHHHHhc------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Q 007829 172 QGLPVVLS------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTP 245 (588)
Q Consensus 172 ~~i~~il~------g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~ 245 (588)
..+..+|. |+-+.+.+|.|||||..++- ++..+.. .|..++|+.+--+|.... ++++.-.
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~-~~a~~~~----------~g~~~~~i~~e~~~~~~~---~~~~Gv~ 1482 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ-VIAAAQR----------EGKTCAFIDAEHALDPIY---ARKLGVD 1482 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHH-HHHHHHH----------TTCCEEEECTTSCCCHHH---HHHTTCC
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHH-HHHHHHh----------cCCeEEEEecCCCCCHHH---HHHcCCC
Confidence 34555553 46789999999999977544 4433333 477889998877765543 4444221
Q ss_pred ccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHH---HHHHHHcccCCCCCcceeeecCCcccccCCC------
Q 007829 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGR---LKDMLAKKKMNLDNCRYLTLDEADRLVDLGF------ 316 (588)
Q Consensus 246 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~---l~~~l~~~~~~l~~~~~lIvDEah~l~~~~~------ 316 (588)
+ . +++|.-|+. .+..+.. .+.-..+++||||.+-.+...+-
T Consensus 1483 ~-------------------~----------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~ 1532 (1706)
T 3cmw_A 1483 I-------------------D----------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIG 1532 (1706)
T ss_dssp G-------------------G----------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC----
T ss_pred H-------------------H----------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCcccccccccc
Confidence 1 1 255555532 2222211 11224578999999988775321
Q ss_pred -----------HHHHHHHHHhhhhcceEEEEeeccchHH
Q 007829 317 -----------EDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 317 -----------~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...++++...++...-+++|...+..++
T Consensus 1533 ~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1533 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccccc
Confidence 1123444445555555777877776543
No 239
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.91 E-value=4.8 Score=41.42 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=18.0
Q ss_pred HHHHHHHHh--cCCCEEEEecCCchHhHH
Q 007829 170 QVQGLPVVL--SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 170 Q~~~i~~il--~g~dvi~~a~TGsGKTl~ 196 (588)
+...+..++ .|.-+++++|||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 333444333 345678999999999954
No 240
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.64 E-value=26 Score=36.86 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=14.7
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~l 199 (588)
+.+++++++|+|||..+.-
T Consensus 102 ~vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578889999999966543
No 241
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.37 E-value=5.8 Score=36.38 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=44.8
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~------~~GlDip~ 462 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+..+.... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999999888887653 6788999998775544332 22 37899999521 24556667
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 156 ~~~iV 160 (224)
T 1qde_A 156 IKMFI 160 (224)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77766
No 242
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.18 E-value=1.7 Score=42.02 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV--VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~--il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|+++.-.....+.|... +..+. ...+.+.. +..++.+++.||+|+|||.++
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREV-VELPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-THHHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH-HHHHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345688877667777766543 11000 00111111 125678999999999999654
No 243
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=71.78 E-value=2 Score=42.87 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
++-++++||||||||.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346889999999999664
No 244
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.63 E-value=2.5 Score=42.61 Aligned_cols=20 Identities=40% Similarity=0.383 Sum_probs=17.3
Q ss_pred HhcCCCEEEEecCCchHhHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~ 196 (588)
+..|..+++++|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34789999999999999954
No 245
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.63 E-value=1.9 Score=40.84 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
..+.+++.||+|+|||.++
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999664
No 246
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=71.51 E-value=1.9 Score=42.26 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|+++.-...+.+.|... +..|.......... +..++.+++.||+|+|||..+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 345788877666666666543 00000000000111 124678999999999999664
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.18 E-value=8.1 Score=37.32 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.++++.||+|+|||.+.
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3678999999999999654
No 248
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.73 E-value=3 Score=41.26 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHhcCCCEEEEecCCchHhHHH
Q 007829 175 PVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 175 ~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
..+..+.++++.||+|+|||...
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456889999999999999654
No 249
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=70.69 E-value=2.4 Score=37.52 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
++.+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999654
No 250
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.11 E-value=2.5 Score=38.39 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=16.9
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.++.++++|++|||||.+.-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 57789999999999996653
No 251
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=70.04 E-value=3 Score=39.71 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.++++.|++|+|||.++
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5689999999999999654
No 252
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=69.92 E-value=2.6 Score=38.37 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=14.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 253
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=69.73 E-value=2.5 Score=37.60 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=16.3
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~l 199 (588)
++.++++|++|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999976543
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=69.55 E-value=2 Score=37.99 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
++-++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999664
No 255
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=69.44 E-value=4.8 Score=51.19 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHH----HHHHHhcCCCEEEEecCCchHhHHHHH
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQ----GLPVVLSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~----~i~~il~g~dvi~~a~TGsGKTl~~~l 199 (588)
+...+.+.+.+.|+. +++.+.. ....+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445667777777764 6666533 233444678899999999999987654
No 256
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=68.63 E-value=2.2 Score=37.92 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=17.3
Q ss_pred hcCCCEEEEecCCchHhHHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~~ 198 (588)
..++.++++|++|||||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999996643
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.35 E-value=2.8 Score=38.38 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|+-++++||+|+|||.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666888999999999654
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=68.18 E-value=2.6 Score=41.42 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=13.1
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-+++++|||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678899999999664
No 259
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=68.16 E-value=13 Score=39.11 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=50.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HH-hcCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VV-KRGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l-~~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
+...+|++.+..-+..+.+.+... +.++..++|+.+..++.. .+ ....+|+|||+..+ ..+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~G 411 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STG 411 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hcc
Confidence 445556666666665555554443 347888999887655433 22 23568999997443 346
Q ss_pred CCCCCcceeeecCCc
Q 007829 295 MNLDNCRYLTLDEAD 309 (588)
Q Consensus 295 ~~l~~~~~lIvDEah 309 (588)
+++..+++||+..+.
T Consensus 412 iDip~v~~vi~~~~~ 426 (510)
T 2oca_A 412 ISVKNLHHVVLAHGV 426 (510)
T ss_dssp CCCCSEEEEEESSCC
T ss_pred cccccCcEEEEeCCC
Confidence 788999999988877
No 260
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=68.03 E-value=2.4 Score=41.77 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.6
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
+-++++||||||||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34678899999999664
No 261
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=67.64 E-value=5.1 Score=43.82 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
.+.++||.|+|+.-+..+++.+.+. ++++..++|+.+..+. .+.+.+|+||| +.+..+ +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----------g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDI 455 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----------GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTG 455 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----------CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCC
Confidence 4668999999999999988887764 6789999998876542 23557999999 555543 345
Q ss_pred CCcceee
Q 007829 298 DNCRYLT 304 (588)
Q Consensus 298 ~~~~~lI 304 (588)
. +++||
T Consensus 456 d-V~~VI 461 (666)
T 3o8b_A 456 D-FDSVI 461 (666)
T ss_dssp C-BSEEE
T ss_pred C-CcEEE
Confidence 4 77666
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=67.03 E-value=3.1 Score=38.02 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.7
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~ 197 (588)
+.|+-++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36788899999999999653
No 263
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.94 E-value=2.6 Score=38.60 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|+-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4667899999999999553
No 264
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=66.76 E-value=7.8 Score=39.95 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
+.++||+||++.-+..+++.+.+. ++++..++|+. .......+. ...+|+||| +.+.. ++++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----------~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDi 233 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----------GKKVLYLNRKT-FESEYPKCKSEKWDFVITT-----DISEM-GANF 233 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC-----GGGGT-SCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----------CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC-----chHHc-Cccc
Confidence 447999999999999988888775 67788888873 223333343 457999999 55544 4455
Q ss_pred CCccee
Q 007829 298 DNCRYL 303 (588)
Q Consensus 298 ~~~~~l 303 (588)
. +..|
T Consensus 234 p-~~~V 238 (431)
T 2v6i_A 234 K-ADRV 238 (431)
T ss_dssp C-CSEE
T ss_pred C-CcEE
Confidence 4 5544
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=66.57 E-value=3.1 Score=41.38 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=16.7
Q ss_pred hcCCCEEEEecCCchHhHH
Q 007829 178 LSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~ 196 (588)
..|..+.+++|||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3789999999999999954
No 266
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.46 E-value=11 Score=36.15 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHhcCC-----CEEEEecCCchHhHHHH
Q 007829 152 EPILKKLKAKGIVQPTPIQVQG-LPVVLSGR-----DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~-i~~il~g~-----dvi~~a~TGsGKTl~~~ 198 (588)
..+.+.|+-.|+. |++... +...+.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4788888877765 555433 44455543 48889999999997654
No 267
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=65.62 E-value=11 Score=37.96 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.1
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
..++++.||+|+|||.++-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999996643
No 268
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.46 E-value=3.2 Score=39.46 Aligned_cols=15 Identities=33% Similarity=0.076 Sum_probs=12.8
Q ss_pred EEEEecCCchHhHHH
Q 007829 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vi~~a~TGsGKTl~~ 197 (588)
+++++|||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678899999999654
No 269
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=65.20 E-value=5.9 Score=40.12 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcc
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~l~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ .. ..+|+|+| +.+ ..
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 342 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR----------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT-----DLL-AR 342 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT----------TCCCEEC---CHHHHHHHHHHHHSCC---CEEEC-----SSC-C-
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc----------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEEC-----Ccc-cc
Confidence 3457899999999999888777654 67788899988766554433 22 46899999 333 34
Q ss_pred cCCCCCcceeee
Q 007829 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lIv 305 (588)
++++..+++||.
T Consensus 343 Gidip~v~~Vi~ 354 (414)
T 3eiq_A 343 GIDVQQVSLVIN 354 (414)
T ss_dssp -CCGGGCSCEEE
T ss_pred CCCccCCCEEEE
Confidence 566777887775
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=64.88 E-value=3 Score=37.66 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.9
Q ss_pred CCEEEEecCCchHhHH
Q 007829 181 RDMIGIAFTGSGKTLV 196 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~ 196 (588)
|-++++||+|+|||.+
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999965
No 271
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=64.88 E-value=3.5 Score=37.34 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=16.4
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~ 197 (588)
..|.-++++||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999654
No 272
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.82 E-value=3 Score=39.08 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=49.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----ccc---CCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASK---GLDF 460 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~~~---GlDi 460 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+..... .......+..+|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999999888765 677777776532211 111223567789999942 112 4777
Q ss_pred CCcceEEe
Q 007829 461 PDIQHVIN 468 (588)
Q Consensus 461 p~v~~VI~ 468 (588)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88887774
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.68 E-value=2.8 Score=36.58 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-++++|++|||||.+.
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999654
No 274
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=64.58 E-value=19 Score=37.19 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=15.5
Q ss_pred CCEEEEecCCchHhHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~ 201 (588)
+.+++++++|+|||.+..--+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457778999999997654433
No 275
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=64.34 E-value=7.4 Score=42.75 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCC
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~ 296 (588)
.+.++||.||++.-+..+++.+... ++++..++|. ........+. ...+|+||| +.+. ..++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----------g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e-~GID 471 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----------GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISE-MGAN 471 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGG-TTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----------CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhh-ccee
Confidence 3568999999999999888777654 6788888884 2222233333 357899999 5554 3556
Q ss_pred CCCcceee
Q 007829 297 LDNCRYLT 304 (588)
Q Consensus 297 l~~~~~lI 304 (588)
+. +++||
T Consensus 472 ip-v~~VI 478 (673)
T 2wv9_A 472 FG-ASRVI 478 (673)
T ss_dssp CC-CSEEE
T ss_pred eC-CcEEE
Confidence 66 77665
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=64.01 E-value=3.4 Score=36.94 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+++++|+|||||...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5677899999999999653
No 277
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.88 E-value=4.3 Score=35.54 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+..++++++.|||||.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999654
No 278
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=63.84 E-value=24 Score=33.70 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=60.7
Q ss_pred cCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH
Q 007829 188 FTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS 267 (588)
Q Consensus 188 ~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~ 267 (588)
...+||-.. +.-++..+.. .+.++||.+.++..+..+.+.+.... ++.+..++|+.+..+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~----------~~~kvlIFs~~~~~~~~l~~~L~~~~---------g~~~~~l~G~~~~~~ 151 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD----------EGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKE 151 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH----------TTCCEEEEESCHHHHHHHHHHHHHHH---------CSCCCEECTTSCHHH
T ss_pred cccCHHHHH-HHHHHHHHHh----------CCCeEEEEeccHHHHHHHHHHHHHhc---------CCcEEEEECCCCHHH
Confidence 456888754 4444444433 46689999999998888887776632 566778899887655
Q ss_pred HHH---HHhcC--Cc-EEEeChHHHHHHHHcccCCCCCcceeeecCC
Q 007829 268 QLE---VVKRG--VH-IVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308 (588)
Q Consensus 268 ~~~---~l~~~--~~-IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEa 308 (588)
... .+..+ +. ++++| +. ...++++..+++||+=+.
T Consensus 152 R~~~i~~F~~~~~~~v~L~st-----~~-~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 152 RDDIISKFQNNPSVKFIVLSV-----KA-GGFGINLTSANRVIHFDR 192 (271)
T ss_dssp HHHHHHHHHHCTTCCEEEEEC-----CT-TCCCCCCTTCSEEEECSC
T ss_pred HHHHHHHhcCCCCCCEEEEeh-----hh-hcCCcCcccCCEEEEECC
Confidence 433 33433 45 55666 22 245677888887775443
No 279
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=63.63 E-value=13 Score=41.64 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcc-cccCCCCceEEEEEcCcchHHHHHHHh---------cCCcEEEeChHHHH
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPM-RDAGYPDLRTLLCIGGVDMRSQLEVVK---------RGVHIVVATPGRLK 287 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~i~~~~~~gg~~~~~~~~~l~---------~~~~IvV~Tp~~l~ 287 (588)
.+..+||.+|++.-+..+++.+...+..+ ......++.+..++|+.+..++...+. ....|||||
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT----- 376 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST----- 376 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----
Confidence 35689999999999999998888643322 011224788999999988777655443 235899999
Q ss_pred HHHHcccCCCCCcceeee
Q 007829 288 DMLAKKKMNLDNCRYLTL 305 (588)
Q Consensus 288 ~~l~~~~~~l~~~~~lIv 305 (588)
+.+.. .+++..+.+||-
T Consensus 377 ~iae~-GidIp~v~~VId 393 (773)
T 2xau_A 377 NIAET-SLTIDGIVYVVD 393 (773)
T ss_dssp THHHH-TCCCTTEEEEEE
T ss_pred cHHHh-CcCcCCeEEEEe
Confidence 45443 567788887774
No 280
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.57 E-value=4.1 Score=36.41 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+..+++++++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999664
No 281
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=63.43 E-value=4.5 Score=36.81 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=16.8
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~ 197 (588)
..|+-++++||+|||||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 46788999999999999654
No 282
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.33 E-value=2.4 Score=43.93 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 140 PPIKNFKDMRFPEPILKKLKAK-G--IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~-g--~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
.|-.+|++.+=-....+.|.+. - +..|.-++.-.+ --.+.+++.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 3556788887656666666543 1 112222221111 13478999999999999664
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=63.24 E-value=57 Score=31.50 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.1
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~l 199 (588)
++-+++++++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45577789999999965443
No 284
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.08 E-value=4.8 Score=38.24 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=17.8
Q ss_pred hcCCCEEEEecCCchHhHHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~~ 198 (588)
+.|+.+++++++|||||.+.-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 359999999999999996643
No 285
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=63.01 E-value=16 Score=39.97 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=54.6
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchH---HHHHHHhc---CCcEEEeChHHHHHHHHcccC
Q 007829 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMR---SQLEVVKR---GVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~---~~~IvV~Tp~~l~~~l~~~~~ 295 (588)
.+|+|+|+.-+..+.+.+.+. ++.+..++|+.+.. .+...+.. ..+|+||| +.+. .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~e-~Gl 386 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAIG-MGL 386 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGGG-SSC
T ss_pred CEEEEcCHHHHHHHHHHHHhc----------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHHH-CCc
Confidence 467799998888888777764 67889999998876 44455553 37999999 4543 466
Q ss_pred CCCCcceeeecCCccc
Q 007829 296 NLDNCRYLTLDEADRL 311 (588)
Q Consensus 296 ~l~~~~~lIvDEah~l 311 (588)
++ .+++||.-...+.
T Consensus 387 Di-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 387 NL-SIRRIIFYSLIKP 401 (677)
T ss_dssp CC-CBSEEEESCSBC-
T ss_pred Cc-CccEEEECCcccc
Confidence 77 8999998888664
No 286
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=62.92 E-value=36 Score=33.14 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.++-+++++++|+|||....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHH
Confidence 34557788999999996543
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.63 E-value=4.3 Score=36.69 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+.++||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667888999999999653
No 288
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=62.53 E-value=3.8 Score=40.51 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.6
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.++++||||||||.+.
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999654
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=62.47 E-value=3.3 Score=36.84 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.-+++.|++|||||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3566889999999999654
No 290
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=62.41 E-value=31 Score=27.49 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=42.9
Q ss_pred EEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEE
Q 007829 397 VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDV 447 (588)
Q Consensus 397 viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~V 447 (588)
.+||.....-...+...++..|+.++.++++.+...|..-++.|.....+|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467877777788888888999999999999999999999999998755444
No 291
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.36 E-value=46 Score=35.04 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=16.6
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.|.-+++.+++|+|||.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~ 300 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSR 300 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH
Confidence 567788899999999965433
No 292
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=62.19 E-value=8.9 Score=39.77 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=46.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
+.++||.|||+.-|..+++.+.+. ++.+..++|.... .....+. ...+|+||| +.+. ..+++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----------g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~-~GiDi 250 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----------GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISE-MGANF 250 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGG-SSCCC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----------CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHH-hCcCC
Confidence 447999999999999888877654 6778888876442 2223333 357999999 5554 45566
Q ss_pred CCcceee
Q 007829 298 DNCRYLT 304 (588)
Q Consensus 298 ~~~~~lI 304 (588)
.. ++||
T Consensus 251 p~-~~VI 256 (451)
T 2jlq_A 251 RA-GRVI 256 (451)
T ss_dssp CC-SEEE
T ss_pred CC-CEEE
Confidence 66 6655
No 293
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.10 E-value=4.7 Score=36.07 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.8
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
+-+.++||+|+|||.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999653
No 294
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.07 E-value=3.7 Score=42.27 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 140 PPIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
.|-.+|++.+=-..+.+.|.+. -+..|--++...++ -.+.+++.+|.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 3556888887555555555543 12233333322221 3478999999999999664
No 295
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=61.78 E-value=4.9 Score=39.32 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
...++++.+++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 5679999999999999664
No 296
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=61.65 E-value=5 Score=37.04 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.4
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~ 197 (588)
..|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36888999999999999553
No 297
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=61.54 E-value=4.2 Score=40.69 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.9
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
++.+++.||+|+|||.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999996643
No 298
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=60.89 E-value=1.7 Score=41.98 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH--hcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQ-VQGLPVV--LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~~i~~i--l~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|++.+-...+.+.|... +. .|+. ..++..+ .-.+.+++.+|.|+|||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-IL--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHH-HT--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 445788888777777777653 11 1211 1122221 12244999999999999653
No 299
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=60.80 E-value=4.2 Score=39.35 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.++.+++.||+|+|||..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999664
No 300
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=60.73 E-value=50 Score=24.69 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCc--cccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 007829 379 QEAKIVYLLECLQKTPPPVLIFCEN--KADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s--~~~~~~l~~~L~~~g~~~~~ihg~~~~~~r~~~~~~F~ 441 (588)
....+..++..++..+.|.+||++. .+++.+..+.-++.|+...++.+. ++++-..-.+.|.
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvrefl 99 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREFL 99 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHHH
Confidence 3455677888888899999999985 456777888888889998888775 4455555555554
No 301
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=60.43 E-value=6.3 Score=30.76 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=31.1
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999998899999999999999777888864
No 302
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.42 E-value=6 Score=39.77 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ -+.||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4566778987544 48999999965
No 303
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=60.20 E-value=4.5 Score=40.31 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=13.8
Q ss_pred CEEEEecCCchHhHHHH
Q 007829 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~ 198 (588)
-++++||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46788999999996653
No 304
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=60.15 E-value=9.1 Score=40.40 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.1
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
.+.++++.+.||||||.+.-.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 467999999999999965433
No 305
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=60.07 E-value=4.5 Score=38.25 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457999999999999654
No 306
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=60.07 E-value=3.9 Score=41.39 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=15.9
Q ss_pred hcCCCEEEEecCCchHhHH
Q 007829 178 LSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~ 196 (588)
..|..+++++|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999955
No 307
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=59.68 E-value=15 Score=39.78 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=47.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~l 297 (588)
+.++||.|+|+.-|..+++.+.+. ++++..++|. ........+. ...+|+||| +.+.. .+++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----------g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaT-----dv~~r-GiDi 417 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----------GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTT-----DISEM-GANF 417 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTT-THHHHTTHHHHSCCSEEEEC-----GGGGT-TCCC
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----------CCcEEEEChH-HHHHHHHhhcCCCcEEEEEC-----cHHHc-Cccc
Confidence 457999999999999988888775 6778888875 2222333343 457899999 55544 4555
Q ss_pred CCcceee
Q 007829 298 DNCRYLT 304 (588)
Q Consensus 298 ~~~~~lI 304 (588)
. +++||
T Consensus 418 ~-v~~VI 423 (618)
T 2whx_A 418 R-AGRVI 423 (618)
T ss_dssp C-CSEEE
T ss_pred C-ceEEE
Confidence 4 66664
No 308
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.57 E-value=14 Score=41.45 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=47.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c----ccC-C-CCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A----SKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~----~~G-l-Dip~ 462 (588)
++++||.|+++.-+....+.+... ++.+..+||+.+...+...+. +..+|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999988888877665 899999999987655433222 35789999952 1 222 3 5667
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 309
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.54 E-value=4.3 Score=42.20 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKG---IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|++.+=-..+.+.|.+.= +..|--++.-. +--.+.+++.||.|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 4568999887777777776541 11221122111 113578999999999999664
No 310
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=59.44 E-value=18 Score=35.99 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=51.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~------~~GlDip~ 462 (588)
.++++||.|+++.-+..+++.+... ++.+..++|+.+..+....+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3569999999999999888887653 688999999998766554443 46799999421 23455667
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77777
No 311
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.42 E-value=3.2 Score=42.82 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|++.+=-..+.+.|.+. -+..|--++...+ --.+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 446888887555666655443 1112222221111 13467999999999999664
No 312
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=59.28 E-value=5.8 Score=32.01 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=32.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
...++++||.+-..+...+..|...|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999999998999999999999999999999854
No 313
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=59.12 E-value=4.8 Score=41.07 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.1
Q ss_pred EEEEecCCchHhHHHH
Q 007829 183 MIGIAFTGSGKTLVFV 198 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~ 198 (588)
++++||||||||.++.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6788999999996643
No 314
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=59.00 E-value=9.2 Score=40.35 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c----ccC-C-CCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A----SKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~----~~G-l-Dip~ 462 (588)
+.++||+|+++.-+..+.+.+... ++.+..+||+.+...+...+. +..+|+|+|.- + ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888777665 899999999986554432221 24679999953 2 122 3 5667
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 315
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=58.85 E-value=9.9 Score=31.55 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCEEEEe-CccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 395 PPVLIFC-ENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 395 ~~viIF~-~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
.+++||| .+-..+...+..|...|+++..+.||+.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 7899999 5777888999999999999999999865
No 316
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.80 E-value=9.3 Score=38.20 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=25.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+-+++.++.|+|||...+..+... .. .+..++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~----------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QA----------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH----------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh----------CCCeEEEEECC
Confidence 45778899999999996654443333 22 24567777643
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=58.63 E-value=5.6 Score=36.01 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-++++|+.|||||.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678899999999999654
No 318
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=58.23 E-value=3.8 Score=36.18 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.|.=+.+++|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45567889999999996644
No 319
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=58.20 E-value=4.3 Score=35.68 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.3
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-++++|+.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3688899999999654
No 320
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=58.02 E-value=9.5 Score=38.26 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=26.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+-+++.++.|+|||..++-.+.... . .+..++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~----------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R----------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-H----------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H----------CCCeEEEEeCC
Confidence 467789999999999976544443332 2 24467777753
No 321
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=57.87 E-value=3.7 Score=29.00 Aligned_cols=22 Identities=45% Similarity=0.978 Sum_probs=18.9
Q ss_pred CCCCcccCCCCcccccCcchHH
Q 007829 544 VKGCAYCGGLGHRIRDCPKLEH 565 (588)
Q Consensus 544 ~~~c~~cg~~g~~~~~~~~~~~ 565 (588)
.-.|.+||-.||...+||+-..
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCcceeCCCCCcccccCcCCcc
Confidence 3579999999999999998643
No 322
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=57.63 E-value=5.6 Score=34.61 Aligned_cols=17 Identities=18% Similarity=-0.201 Sum_probs=13.8
Q ss_pred CEEEEecCCchHhHHHH
Q 007829 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~ 198 (588)
-+++.|+.|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999996643
No 323
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=57.55 E-value=7 Score=38.67 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=17.7
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007829 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--i~~a~TGsGKTl~ 196 (588)
.+..++.|.|. +..+.||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 44556788875 4458999999966
No 324
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=57.45 E-value=5.7 Score=31.59 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=32.2
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999998999999999999999888888753
No 325
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.44 E-value=6 Score=36.03 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHhcCCCEEEEecCCchHhHHH
Q 007829 176 VVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 176 ~il~g~dvi~~a~TGsGKTl~~ 197 (588)
.+..|.-+.+++|+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888899999999999653
No 326
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=57.29 E-value=2.2 Score=44.70 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
+.++||.||++.-|..+++.+... ++.+..++|+.+..++...+ . ...+|+||| +++. .+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~~~~-~G 396 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----cccc-cC
Confidence 467999999999998888877765 56788888887665543332 2 247899999 4443 45
Q ss_pred CCCCCcceee
Q 007829 295 MNLDNCRYLT 304 (588)
Q Consensus 295 ~~l~~~~~lI 304 (588)
+++..+++||
T Consensus 397 lDip~v~~VI 406 (479)
T 3fmp_B 397 IDVEQVSVVI 406 (479)
T ss_dssp ----------
T ss_pred CccccCCEEE
Confidence 6777788776
No 327
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.23 E-value=10 Score=35.37 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=16.6
Q ss_pred CEEEEecCCchHhHHHHHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIM 203 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~ 203 (588)
++++.++.|+|||.+.+--+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5888899999999775444443
No 328
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.92 E-value=11 Score=36.95 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.5
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
|.-+.+++|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 556778899999999553
No 329
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=56.91 E-value=13 Score=39.32 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c----ccC-C-CCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A----SKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~----~~G-l-Dip~ 462 (588)
+.++||.|+++.-+..+.+.+... ++.+..+||+.+...+...+. ...+|+|+|.- + ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888887664 899999999987655433221 23679999953 2 222 4 6777
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88877
No 330
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=56.84 E-value=5.5 Score=39.22 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-----SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-----~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|+++.-...+.+.|...- . .|. ..|.+. ..+.+++.||+|+|||.++
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i-~--~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAV-I--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT-H--HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHH-H--HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3356888776777777766531 0 010 011111 2357999999999999664
No 331
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=56.74 E-value=5.4 Score=39.38 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-----SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-----~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|+++.=...+.+.|.+.- . .|.. .|.++ ..+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v-~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV-I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3457888776666666665420 0 0000 01121 2368999999999999664
No 332
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.68 E-value=4.5 Score=35.92 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.|..++++|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45568899999999996643
No 333
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=56.32 E-value=6.2 Score=31.67 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGK 428 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~ 428 (588)
...+++|||.+-..+...+..|...|+++..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 356899999998899999999999999998888875
No 334
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=56.29 E-value=5.4 Score=35.03 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.4
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-++++++.|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999654
No 335
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=56.23 E-value=5.7 Score=38.59 Aligned_cols=17 Identities=18% Similarity=-0.013 Sum_probs=14.3
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56888899999999654
No 336
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=56.18 E-value=13 Score=34.04 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=29.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCEEEEecCCchHhHHH
Q 007829 151 PEPILKKLKAKGIVQPTPIQVQGLPVVLSG----RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g----~dvi~~a~TGsGKTl~~ 197 (588)
...+.+.|+=.|+ .+... ...+..++.+ +.+++.+|.|+|||..+
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3567777775554 33333 4445555544 35888999999999654
No 337
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=56.16 E-value=9.2 Score=37.22 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=48.7
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------c-cCCCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------S-KGLDFP 461 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~------~-~GlDip 461 (588)
.+++||.++++.-+..+++.+... ++.+..++|+.+.... .....+|||+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999988888654 5677788877653221 13456899999632 1 357788
Q ss_pred CcceEEe
Q 007829 462 DIQHVIN 468 (588)
Q Consensus 462 ~v~~VI~ 468 (588)
++++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888774
No 338
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=56.03 E-value=6.5 Score=36.44 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=16.3
Q ss_pred HhcCCCEEEEecCCchHhHHH
Q 007829 177 VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 177 il~g~dvi~~a~TGsGKTl~~ 197 (588)
+..|+-++++||+|||||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346788899999999999653
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=55.89 E-value=13 Score=32.87 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=11.7
Q ss_pred EEEEecCCchHhHH
Q 007829 183 MIGIAFTGSGKTLV 196 (588)
Q Consensus 183 vi~~a~TGsGKTl~ 196 (588)
+.++++.|||||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999954
No 340
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=55.85 E-value=7.8 Score=33.37 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=12.2
Q ss_pred EEEEecCCchHhHH
Q 007829 183 MIGIAFTGSGKTLV 196 (588)
Q Consensus 183 vi~~a~TGsGKTl~ 196 (588)
.++++|+|||||.+
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999965
No 341
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=55.80 E-value=5.9 Score=31.33 Aligned_cols=37 Identities=32% Similarity=0.554 Sum_probs=32.2
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
...++++||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3468999999999999999999999999888888753
No 342
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=55.77 E-value=6.5 Score=39.40 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
.+.+++.||+|+|||.++-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999996643
No 343
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=55.63 E-value=7.8 Score=39.01 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=17.5
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
.+..++.|.|+. ..|.||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 344567888754 448999999965
No 344
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=55.45 E-value=8.1 Score=38.97 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=17.6
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ .+.||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3455678887644 48999999965
No 345
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=55.41 E-value=5.1 Score=26.12 Aligned_cols=22 Identities=45% Similarity=0.978 Sum_probs=19.2
Q ss_pred CCCCcccCCCCcccccCcchHH
Q 007829 544 VKGCAYCGGLGHRIRDCPKLEH 565 (588)
Q Consensus 544 ~~~c~~cg~~g~~~~~~~~~~~ 565 (588)
...|.+||-.||...+||+-..
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 4689999999999999998654
No 346
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.40 E-value=8.5 Score=39.33 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~~ 197 (588)
.+..++.|.|+.+ .|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677789988644 489999999663
No 347
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=55.23 E-value=8.2 Score=38.72 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=18.0
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ .+.||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4556678887644 48999999965
No 348
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=55.14 E-value=5.9 Score=35.85 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+.+++++|||||.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667888999999999664
No 349
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=54.76 E-value=6.1 Score=41.12 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.++++++.+|+|+|||..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34689999999999996653
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=54.76 E-value=6.2 Score=37.16 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|+++.-.+.....++..-. ... ....+..+- -.+.+++.+|+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 44577877666666655554310 000 012222211 1245999999999999553
No 351
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=54.71 E-value=7.3 Score=38.88 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=17.4
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007829 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--i~~a~TGsGKTl~ 196 (588)
.+..++.|.|+ +..+.||||||..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 34456688875 4448999999965
No 352
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=54.68 E-value=8.1 Score=38.55 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=17.5
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
.+..++.|.|.. ..+.||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 345567888764 448999999965
No 353
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=54.57 E-value=8.3 Score=38.55 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=17.4
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|..+ .+.||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 3445678887544 48999999965
No 354
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=54.56 E-value=8.5 Score=38.55 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
.+..++.|.|.. ..+.||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 455667898764 448999999966
No 355
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.53 E-value=10 Score=45.27 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=24.1
Q ss_pred CCCcceeeecCCcccccCCCHHHHHHHHHhhhhcc
Q 007829 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQR 331 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~~~~~~i~~i~~~~~~~~ 331 (588)
+++-+++|+|||=--+|..-+..+...++.....+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~ 1267 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGR 1267 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCC
Confidence 34557899999988777665666666666655554
No 356
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=54.38 E-value=8.7 Score=39.24 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=17.4
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
.+..++.|.|+. ..|.||||||..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 345567888754 448999999966
No 357
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=54.34 E-value=12 Score=37.61 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=25.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|+-+++.+++|+|||...+- ++..+.. .+..++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~-la~~~~~----------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA-IVAQAQK----------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHH----------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHH-HHHHHHH----------CCCeEEEEECCC
Confidence 456788899999999965443 3333332 244677776543
No 358
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.25 E-value=16 Score=37.73 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.7
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
.+++++.+|+|+|||.++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999664
No 359
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.23 E-value=14 Score=47.77 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH----HHHhcCCCEEEEecCCchHhHHHH
Q 007829 150 FPEPILKKLKAKGIVQPTPIQVQGL----PVVLSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i----~~il~g~dvi~~a~TGsGKTl~~~ 198 (588)
|...+.+.+.+.|+ .|++.+..=+ ..+...+.++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 45667777888887 4666554333 333466779999999999998764
No 360
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=54.12 E-value=8.8 Score=38.36 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=18.2
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~~ 197 (588)
.+..++.|.|..+ .+.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556678887544 489999999653
No 361
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=54.09 E-value=8.3 Score=38.67 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=17.0
Q ss_pred HHHHhcCCCEE--EEecCCchHhHH
Q 007829 174 LPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 174 i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
+..++.|.|.. ..|.||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 44567888754 448999999955
No 362
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=53.96 E-value=8.6 Score=38.13 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCEE--EEecCCchHhHH
Q 007829 172 QGLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 172 ~~i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
..+..++.|.|.. ..+.||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 3567778998754 458999999965
No 363
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=53.74 E-value=8.4 Score=38.62 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=17.6
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
.+..++.|.|.. ..+.||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 445567888754 448999999965
No 364
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=53.63 E-value=8.2 Score=38.75 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.7
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~ 196 (588)
.+..++.|.|+. ..+.||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 455567888754 448999999955
No 365
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=53.36 E-value=7.2 Score=34.71 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.6
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.-+++++|+|||||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34678899999999654
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=53.29 E-value=8 Score=34.13 Aligned_cols=16 Identities=25% Similarity=0.135 Sum_probs=13.0
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-.++++++|||||.+.
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578899999999653
No 367
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.21 E-value=11 Score=34.39 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cc-cCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK--------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----AS-KGLD 459 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~--------g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~~-~GlD 459 (588)
+.++||.++++.-+..+++.+... ++.+..++|+.+..+... .+ ....+|+|+|.- +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999888877653 678888999876443211 11 245789999952 22 2355
Q ss_pred CCCcceEE
Q 007829 460 FPDIQHVI 467 (588)
Q Consensus 460 ip~v~~VI 467 (588)
+..+++||
T Consensus 148 ~~~~~~lV 155 (219)
T 1q0u_A 148 VHTAHILV 155 (219)
T ss_dssp GGGCCEEE
T ss_pred cCcceEEE
Confidence 66677666
No 368
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=53.20 E-value=5.4 Score=35.52 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=14.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+.-++++|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446788999999999664
No 369
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=53.15 E-value=13 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.8
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 370
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=53.13 E-value=8.4 Score=38.52 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=19.4
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~~ 197 (588)
.+..++.|.|+.+ .+.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677889988644 489999999663
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=53.11 E-value=8.4 Score=34.32 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.-+++.|+.|||||.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667899999999999664
No 372
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=52.97 E-value=16 Score=42.94 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=43.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCC-CCCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPI-VPGEGPFCLIVCPSRELARQTYEVVEQFLTP 245 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~-~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~ 245 (588)
.|. .+|.|.-|||||.+-.--++..++........ .+-.-..+|+|+=|+.-|.++.+++.+.+..
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 444 49999999999977666666665432100000 0012236999999999999999998876543
No 373
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=52.90 E-value=9.1 Score=38.54 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.6
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ .+.||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 4455678887544 48999999955
No 374
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=52.89 E-value=7.8 Score=39.07 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=18.6
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ .|.||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 5667788987644 48999999965
No 375
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.83 E-value=6.9 Score=39.20 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
..+.+++.||+|+|||.++-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45789999999999996643
No 376
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=52.59 E-value=8.3 Score=33.84 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.8
Q ss_pred CEEEEecCCchHhHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~l 199 (588)
.++++++.|||||.+.-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 688999999999976533
No 377
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.59 E-value=8.2 Score=37.43 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=14.9
Q ss_pred CCEEEEecCCchHhHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~ 198 (588)
..+++.||+|+|||.++-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999996643
No 378
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=52.49 E-value=5.3 Score=35.57 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457889999999997653
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=52.44 E-value=7.5 Score=36.11 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.+..+++.+++|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 44678999999999996643
No 380
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.19 E-value=8.4 Score=39.46 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCEEEE--ecCCchHhHH
Q 007829 172 QGLPVVLSGRDMIGI--AFTGSGKTLV 196 (588)
Q Consensus 172 ~~i~~il~g~dvi~~--a~TGsGKTl~ 196 (588)
..+..++.|.|+.+. |.||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 467778899886444 8999999965
No 381
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=52.05 E-value=12 Score=44.12 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=25.2
Q ss_pred CEEEEeCccc-cHHHHHHHHHHcCCcEEEEeC
Q 007829 396 PVLIFCENKA-DVDDIHEYLLLKGVEAVAVHG 426 (588)
Q Consensus 396 ~viIF~~s~~-~~~~l~~~L~~~g~~~~~ihg 426 (588)
-+.|.|.+.. .+..+...|...|+++....+
T Consensus 344 diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 344 DVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred heEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 4889999974 788899999999999776544
No 382
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=51.89 E-value=7.7 Score=34.98 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.5
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.-++++|+.|||||.+.
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999664
No 383
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=51.50 E-value=8.7 Score=38.36 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=18.8
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~~ 197 (588)
.+..++.|.|+. ..+.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 566677898754 4489999999653
No 384
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=51.42 E-value=6.1 Score=36.63 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=11.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+.++||+|||||.+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777888999999999653
No 385
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=51.40 E-value=7.4 Score=39.47 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
..+++++.||+|+|||.++
T Consensus 147 ~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999664
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=51.34 E-value=8.1 Score=33.61 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.6
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~l 199 (588)
+++++.++.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999976543
No 387
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=51.24 E-value=8.9 Score=38.70 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ .+.||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445668887544 48999999955
No 388
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.22 E-value=8.2 Score=34.36 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.1
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+.+++|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999553
No 389
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=51.02 E-value=4.4 Score=38.55 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.6
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
.+.+++.||+|+|||.++-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999996643
No 390
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.95 E-value=9 Score=38.56 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.3
Q ss_pred CEEEEecCCchHhHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~l 199 (588)
-.++++|||||||.++-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 467899999999976533
No 391
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=50.94 E-value=14 Score=31.12 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCC-cEEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGV-EAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~-~~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999999999999999999999 5888999853
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=50.89 E-value=8.3 Score=38.18 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.9
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999664
No 393
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.75 E-value=6.6 Score=34.82 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=12.8
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999654
No 394
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=50.75 E-value=8.5 Score=31.85 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=31.1
Q ss_pred CCCEEEEeCcccc--HHHHHHHHHHcCCcEEEEeCCCC
Q 007829 394 PPPVLIFCENKAD--VDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 394 ~~~viIF~~s~~~--~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
..+++|||.+-.. +...+..|...|+++..+.||+.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 4589999999887 88999999999999888888753
No 395
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=50.68 E-value=17 Score=30.97 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=31.4
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCC-cEEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGV-EAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~-~~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998889999999999999 5888999874
No 396
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=50.67 E-value=13 Score=36.21 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4666788999999999553
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=50.48 E-value=7.7 Score=35.36 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
++.+... ..+..|.-++++|++|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4555555 33456777889999999999654
No 398
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.46 E-value=11 Score=37.23 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
...++++.||+|+|||.++
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 4567999999999999654
No 399
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=50.28 E-value=40 Score=37.05 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhc--ccc----------cCC--------------CCceEEEEEcCcchHHHHHH
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTP--MRD----------AGY--------------PDLRTLLCIGGVDMRSQLEV 271 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~--~~~----------~~~--------------~~i~~~~~~gg~~~~~~~~~ 271 (588)
.+..+||.||++.-+..+.+.+...+.. +.. ... ....+..++|+.+..++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 4567999999999999998888765321 000 000 01247889999887666544
Q ss_pred Hh----cCCcEEEeChHHHHHHHHcccCCCCCcceeeec
Q 007829 272 VK----RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306 (588)
Q Consensus 272 l~----~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvD 306 (588)
.. ...+|+||| +.+ ..++++..+.+||-+
T Consensus 331 ~~~f~~g~~~vlvaT-----~~l-~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVAT-----PTL-AAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEEC-----GGG-GGSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEEC-----hHH-hcccCCCceEEEEeC
Confidence 32 357999999 343 346778888876643
No 400
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=50.13 E-value=9.7 Score=38.60 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=18.0
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHHH
Q 007829 173 GLPVVLSGRDMI--GIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi--~~a~TGsGKTl~~ 197 (588)
.+..++.|.|.. ..+.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345567888754 4489999999663
No 401
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=49.82 E-value=7.6 Score=42.69 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=50.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcC--------cchHHHHHHHh----cCCcEEEeChHHH
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG--------VDMRSQLEVVK----RGVHIVVATPGRL 286 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg--------~~~~~~~~~l~----~~~~IvV~Tp~~l 286 (588)
+.++||.|+++..+..+.+.+.... .+ ...++++..++|+ .+..++...+. ...+|+|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~-~l---~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT---- 471 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE-KF---AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT---- 471 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC-SC---C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE----
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc-cc---cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc----
Confidence 6789999999999999888777531 01 1125778888888 66665544432 247899999
Q ss_pred HHHHHcccCCCCCcceeee
Q 007829 287 KDMLAKKKMNLDNCRYLTL 305 (588)
Q Consensus 287 ~~~l~~~~~~l~~~~~lIv 305 (588)
+.+ ..++++..+++||.
T Consensus 472 -~~~-~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 472 -TVA-EEGLDIKECNIVIR 488 (699)
T ss_dssp -CSC-CTTSCCCSCCCCEE
T ss_pred -ccc-ccCCccccCCEEEE
Confidence 333 45778889998873
No 402
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=49.74 E-value=24 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=29.5
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
....+++|||.+-..+...+..|...|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 34568999999988899999999999996 4445 7654
No 403
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=49.70 E-value=7.9 Score=41.85 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.9
Q ss_pred CEEEEecCCchHhHH
Q 007829 182 DMIGIAFTGSGKTLV 196 (588)
Q Consensus 182 dvi~~a~TGsGKTl~ 196 (588)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999965
No 404
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=49.68 E-value=17 Score=38.81 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=18.5
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~lp~l~~ 204 (588)
..++++.+.||||||.+....++..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999996644434333
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.57 E-value=10 Score=33.39 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCEEEEecCCchHhHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~ 198 (588)
..++++++.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999997653
No 406
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.55 E-value=10 Score=33.92 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=23.1
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007829 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
+++.+++|||||..+.- +. . . +..+++++.....-..+.+.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~-la----~---------~-~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LI----G---------D-APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HH----C---------S-CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHH-HH----h---------c-CCCeEEEecCCCCCHHHHHHHH
Confidence 68899999999954322 11 1 1 3457888876544333333333
No 407
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=49.52 E-value=11 Score=34.66 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=15.9
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~l 199 (588)
+..+++.|++|||||...-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999966533
No 408
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=49.51 E-value=8.4 Score=39.07 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=16.4
Q ss_pred HHHhcCCCEEE--EecCCchHhHH
Q 007829 175 PVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 175 ~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
..++.|.|+.+ .|.||||||..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeE
Confidence 34668887544 48999999965
No 409
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=49.50 E-value=6.2 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=14.1
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.-++++||+|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999654
No 410
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=49.30 E-value=8.9 Score=35.17 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=14.4
Q ss_pred CCEEEEecCCchHhHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~ 198 (588)
..+.+.|++|||||.+.-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999996643
No 411
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=49.03 E-value=13 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988999999999999995 888999864
No 412
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=48.85 E-value=11 Score=34.41 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=13.7
Q ss_pred EEEEecCCchHhHHHHH
Q 007829 183 MIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~l 199 (588)
.++.|+.|||||.....
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 57889999999976533
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.74 E-value=10 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567889999999999664
No 414
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=48.74 E-value=7.6 Score=35.37 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=14.1
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355677889999999954
No 415
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=48.71 E-value=9 Score=36.67 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|+++.-.+.+...+...-. ... ....+..+- -.+.+++++|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 44577887766666666654310 000 011222211 1245999999999999553
No 416
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.58 E-value=28 Score=33.59 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.4
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-----c-cCCCCCCc
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-----S-KGLDFPDI 463 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~~-----~-~GlDip~v 463 (588)
+.++||.++++.-+..+++.+... +..+..+||+.+..+.... +. ..+|+|+|.-. . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999999888753 5788999999887654433 22 37899999521 1 23456667
Q ss_pred ceEE
Q 007829 464 QHVI 467 (588)
Q Consensus 464 ~~VI 467 (588)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 417
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=48.25 E-value=11 Score=33.54 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.-++++|++|||||.+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999664
No 418
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=48.08 E-value=8.9 Score=35.14 Aligned_cols=20 Identities=25% Similarity=0.034 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.|.-+.+++|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678889999999996543
No 419
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=48.06 E-value=11 Score=33.91 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCCcceeeecCCcccccC--CCHHHHHHHHHhhhhcceEEEEeeccc
Q 007829 297 LDNCRYLTLDEADRLVDL--GFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 297 l~~~~~lIvDEah~l~~~--~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
....+++|+||+..+-.. .|...+..++. ....+|+-|.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~---~~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS---TPGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH---CSSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh---CCCcEEEEEeecC
Confidence 566789999999887433 24344444433 3333454466753
No 420
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.02 E-value=10 Score=34.68 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007829 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~~ 198 (588)
+..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999996643
No 421
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=47.96 E-value=9.2 Score=34.69 Aligned_cols=18 Identities=28% Similarity=-0.071 Sum_probs=13.9
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
|.-+.++||+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445678899999999654
No 422
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=47.85 E-value=10 Score=33.55 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.3
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688899999999654
No 423
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=47.72 E-value=10 Score=34.87 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+..+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999664
No 424
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=47.57 E-value=10 Score=38.34 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=18.4
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ -+.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5667778987544 48999999955
No 425
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=47.39 E-value=10 Score=37.15 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|||||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 6788889999999999543
No 426
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=47.34 E-value=8.5 Score=36.03 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999954
No 427
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=47.23 E-value=12 Score=38.64 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=17.5
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007829 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi~--~a~TGsGKTl~ 196 (588)
.+..++.|.|..+ .|.||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 3445678887544 48999999965
No 428
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=47.22 E-value=15 Score=39.74 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHhcCCCEEEEecCCchHhHHH
Q 007829 175 PVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 175 ~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
..+..|..+++.+|+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34558899999999999999654
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.12 E-value=11 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.5
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-+++.|+.|||||.+.
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999764
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=47.11 E-value=10 Score=34.51 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=13.9
Q ss_pred CEEEEecCCchHhHHHH
Q 007829 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~ 198 (588)
.+++.|+.|||||.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997653
No 431
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=47.02 E-value=42 Score=34.00 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=50.6
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcCeEeecCC-CCCCCCCCCCC-------CCCHHHHHHHHHC-CCC------------
Q 007829 106 TGWKPPLPIRRMSKKACDLIRKQWHIIVDGED-IPPPIKNFKDM-------RFPEPILKKLKAK-GIV------------ 164 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~-~p~p~~~f~~~-------~l~~~l~~~l~~~-g~~------------ 164 (588)
..|.+...--..|...++.|..+-+-.|.|.. .|..-..|-.+ +.++ +..+.. .|.
T Consensus 73 ~~~~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~p---e~~~~ri~Fe~ltp~yP~er~~ 149 (422)
T 3ice_A 73 SSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP---ENARNKILFENLTPLHANSRLR 149 (422)
T ss_dssp GTTCCCTTCEEBCHHHHHHHTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCH---HHHTTSCCTTTSCEESCCSBCC
T ss_pred cCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeCCCccchHHHHhccCcccCCCh---hhhcCCceeccccccCCCCccc
Confidence 35655555567888999888777766666543 22221111100 1111 111111 221
Q ss_pred ------CCcHHHHHHHHHHh---cCCCEEEEecCCchHhHHHHH
Q 007829 165 ------QPTPIQVQGLPVVL---SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 165 ------~p~~~Q~~~i~~il---~g~dvi~~a~TGsGKTl~~~l 199 (588)
.|-..=..+|..++ .|+.+.+++|+|+|||.....
T Consensus 150 Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 150 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 23334455666655 789999999999999966543
No 432
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=46.94 E-value=9.7 Score=39.46 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007829 141 PIKNFKDMRFPEPILKKLKAKGI---VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~---~~p~~~Q~~~i~~il~g~dvi~~a~TGsGKTl~~ 197 (588)
|-.+|+++.-...+.+.|...-. ..|.-++ ......+.+++.||+|+|||.++
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 44578887766666666654310 0010000 00123478999999999999664
No 433
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=46.86 E-value=12 Score=31.84 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCCEEEEeCcc--ccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 394 PPPVLIFCENK--ADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 394 ~~~viIF~~s~--~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
..+++|||.+- ..+...+..|...|+++..+.||+.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 45899999987 6889999999999999999999853
No 434
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=46.85 E-value=9.6 Score=33.80 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.|.-++++++.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45568889999999996643
No 435
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=46.85 E-value=9.6 Score=33.54 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+++.++.|||||.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566788999999999654
No 436
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=46.84 E-value=13 Score=29.73 Aligned_cols=37 Identities=24% Similarity=0.583 Sum_probs=32.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988999999999999995 778888864
No 437
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=46.65 E-value=10 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4568999999988899999999999995 778888753
No 438
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.55 E-value=12 Score=37.51 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.1
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
=.+++|+||+|||.+.
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578899999999663
No 439
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=46.54 E-value=36 Score=36.40 Aligned_cols=84 Identities=10% Similarity=0.160 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcch--HHHHHHHhcC-Cc---EEEeChHHHHHHHH
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM--RSQLEVVKRG-VH---IVVATPGRLKDMLA 291 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--~~~~~~l~~~-~~---IvV~Tp~~l~~~l~ 291 (588)
.+.++||.|+++.-|..+++.+.+........ ..-.+..++|..+. ......+..+ .+ |+|+| +++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l- 509 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRK--HPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL- 509 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT--CTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhcc--CCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-
Confidence 46789999999999999999998875432111 12235566676543 2223444442 23 77777 444
Q ss_pred cccCCCCCcceeeecCCc
Q 007829 292 KKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 292 ~~~~~l~~~~~lIvDEah 309 (588)
..++++..+.+||++..-
T Consensus 510 ~~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 510 TTGVDAPTCKNVVLARVV 527 (590)
T ss_dssp TTTCCCTTEEEEEEESCC
T ss_pred hcCccchheeEEEEEecC
Confidence 346788899999986653
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=46.44 E-value=12 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.6
Q ss_pred CCEEEEecCCchHhHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~ 198 (588)
+.+++.++.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999996643
No 441
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=46.22 E-value=11 Score=35.55 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|||||.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567888999999999664
No 442
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=46.22 E-value=9.2 Score=34.48 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=15.4
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556888999999999664
No 443
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=46.18 E-value=17 Score=35.80 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.++-+.+++++|+|||....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45567788999999996543
No 444
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=46.15 E-value=35 Score=39.16 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHhcC---CcEEEeChHHHHHHHH
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVKRG---VHIVVATPGRLKDMLA 291 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~---~~IvV~Tp~~l~~~l~ 291 (588)
.+.++||.|+++.-+..+.+.+.... ++++..++|+.+..+.. ..+..+ ++|+||| +.+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~---------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-----~v~- 566 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRERE---------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-----EIG- 566 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTT---------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-----CCT-
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-----chh-
Confidence 46789999999999888777776421 67899999997765443 344444 8999999 333
Q ss_pred cccCCCCCcceeeecCCc
Q 007829 292 KKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 292 ~~~~~l~~~~~lIvDEah 309 (588)
..++++..+.+||+-+.+
T Consensus 567 ~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 567 SEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp TCSSCCTTCCEEECSSCC
T ss_pred hcCCCcccCcEEEEecCC
Confidence 457788889999987665
No 445
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.03 E-value=13 Score=38.75 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
...+++++||+|+|||.+.-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 44689999999999996653
No 446
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=46.01 E-value=19 Score=28.88 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.4
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007829 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
....+++|||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34678999999998999999999999997677889864
No 447
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=45.92 E-value=22 Score=31.39 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=12.3
Q ss_pred CEEEEecCCchHhHH
Q 007829 182 DMIGIAFTGSGKTLV 196 (588)
Q Consensus 182 dvi~~a~TGsGKTl~ 196 (588)
-+++++++|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 467889999999954
No 448
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=45.90 E-value=11 Score=33.82 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+.++|++|||||.+.
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678899999999654
No 449
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.68 E-value=11 Score=34.30 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=14.0
Q ss_pred CEEEEecCCchHhHHHH
Q 007829 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~ 198 (588)
.+++.|+.|||||.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 450
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=45.44 E-value=11 Score=34.19 Aligned_cols=19 Identities=26% Similarity=0.001 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.+.-+.++|++|||||.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999654
No 451
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=45.31 E-value=13 Score=33.66 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=16.1
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHh
Q 007829 182 DMIGIAFTGSGKTLVFVLPMIMIAMH 207 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~lp~l~~~~~ 207 (588)
-.++++|+|+|||.++ -++..++.
T Consensus 25 ~~~I~G~NgsGKStil--~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL--DAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHHH--HHHHHHhc
Confidence 4577899999999653 34444443
No 452
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=44.89 E-value=12 Score=33.87 Aligned_cols=15 Identities=33% Similarity=0.166 Sum_probs=12.6
Q ss_pred EEEEecCCchHhHHH
Q 007829 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vi~~a~TGsGKTl~~ 197 (588)
+.+.|+.|||||.+.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999664
No 453
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=44.88 E-value=13 Score=39.23 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=28.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.|.=+++.|++|+|||...+-.+...+ . ..+..++|+.-- +-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~---------~~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T---------AMGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T---------TSCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H---------hcCCcEEEEecc-CCHHHHHHHH
Confidence 456678889999999965444333322 1 124456776542 3344555444
No 454
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=44.74 E-value=9.4 Score=34.37 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.4
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-+++.|+.|||||.+.
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999664
No 455
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=44.72 E-value=17 Score=37.48 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=16.2
Q ss_pred CCEEEEecCCchHhHHHHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~lp~ 201 (588)
+.+++++++|+|||....-.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578899999999996654433
No 456
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=44.67 E-value=18 Score=36.24 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|+|||...
T Consensus 156 ~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 4556788899999999653
No 457
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=44.41 E-value=9.6 Score=34.30 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.7
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+.-++++++.|||||.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446888999999999664
No 458
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=44.40 E-value=87 Score=34.92 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc----CCc---EEEeChHHHHHHH
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR----GVH---IVVATPGRLKDML 290 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~----~~~---IvV~Tp~~l~~~l 290 (588)
.+.++||.+..+..+.-+.+.+... ++.+..+.|+++..++...+.. ... ++++| ...
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~----------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-----~ag 635 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK----------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-----RAG 635 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH----------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-----HHH
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-----ccc
Confidence 5678999999998877777766554 6778889999887776655532 122 55555 332
Q ss_pred HcccCCCCCcceeeecCCc
Q 007829 291 AKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 291 ~~~~~~l~~~~~lIvDEah 309 (588)
..++++..+..||+=+.+
T Consensus 636 -g~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 636 -GLGINLMTADTVVIFDSD 653 (800)
T ss_dssp -TTTCCCTTCCEEEESSCC
T ss_pred -cCCCCccccceEEEecCC
Confidence 567888888887764443
No 459
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=44.36 E-value=14 Score=37.12 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=14.4
Q ss_pred cCCCE--EEEecCCchHhHH
Q 007829 179 SGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dv--i~~a~TGsGKTl~ 196 (588)
.|.++ +..+.||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 47774 6679999999965
No 460
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=44.32 E-value=22 Score=38.93 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=49.3
Q ss_pred CCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c----ccC-C-CCCCc
Q 007829 395 PPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A----SKG-L-DFPDI 463 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~----~~G-l-Dip~v 463 (588)
+++||.++++.-+....+.+... ++.+..++|+.+...+...+ . ...+|+|+|.- + ..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999999888888887765 79999999988643322222 1 24789999952 2 233 3 56777
Q ss_pred ceEE
Q 007829 464 QHVI 467 (588)
Q Consensus 464 ~~VI 467 (588)
++||
T Consensus 138 ~~vV 141 (696)
T 2ykg_A 138 TLMI 141 (696)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 8877
No 461
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=44.21 E-value=12 Score=33.44 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999654
No 462
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=44.21 E-value=27 Score=39.00 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=51.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHH----HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-cc-----c-------
Q 007829 393 TPPPVLIFCENKADVDDIHEYLL----LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-VA-----S------- 455 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~----~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~------- 455 (588)
.+..++|.++|+.-|...++.+. ..|+.+.++.|+++..+|.... ..+|+++|+ -+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 35689999999998887777664 4599999999999987765542 368999996 22 1
Q ss_pred cCCCCCCcceEE
Q 007829 456 KGLDFPDIQHVI 467 (588)
Q Consensus 456 ~GlDip~v~~VI 467 (588)
..+++..++++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 135666777766
No 463
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=44.10 E-value=12 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.123 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
-+.+.+++|||||.+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999664
No 464
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=43.98 E-value=8.6 Score=33.83 Aligned_cols=20 Identities=20% Similarity=-0.079 Sum_probs=11.4
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.+.-+++.|+.|||||.+.-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568889999999997643
No 465
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=43.84 E-value=9.8 Score=32.92 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=13.4
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+++.++.|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999664
No 466
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=43.51 E-value=14 Score=33.37 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.+.-+++.|+.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46678899999999996643
No 467
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=43.26 E-value=25 Score=39.30 Aligned_cols=69 Identities=13% Similarity=-0.001 Sum_probs=50.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHH----HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c-----ccC-----
Q 007829 393 TPPPVLIFCENKADVDDIHEYLL----LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A-----SKG----- 457 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~----~~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~-----~~G----- 457 (588)
.+.+++|.++|+.-|..+++.+. ..|+.+.++.|+++...|.... ..+|+|+|+- + ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 45689999999998877776654 4589999999999987655433 3789999962 1 122
Q ss_pred --CCCCCcceEE
Q 007829 458 --LDFPDIQHVI 467 (588)
Q Consensus 458 --lDip~v~~VI 467 (588)
+...+++++|
T Consensus 188 ~~~~~~~l~~lV 199 (853)
T 2fsf_A 188 EERVQRKLHYAL 199 (853)
T ss_dssp GGCCCCSCCEEE
T ss_pred hHhcccCCcEEE
Confidence 4556777766
No 468
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=43.02 E-value=14 Score=33.78 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.8
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999664
No 469
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=42.94 E-value=11 Score=35.32 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.4
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999954
No 470
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=42.82 E-value=12 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|.|||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677888999999999955
No 471
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=42.75 E-value=33 Score=31.83 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
..+++|+|+++.-+..+.+.+...++. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 678999999999999999988887888 888988764 2456788873
No 472
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=42.68 E-value=13 Score=34.77 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+.-++++||.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467889999999999654
No 473
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=42.65 E-value=15 Score=33.22 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~ 198 (588)
.+.-+++.|+.|||||.+.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999996643
No 474
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.54 E-value=18 Score=35.47 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.0
Q ss_pred EEEEecCCchHhHH
Q 007829 183 MIGIAFTGSGKTLV 196 (588)
Q Consensus 183 vi~~a~TGsGKTl~ 196 (588)
+++.++.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57889999999955
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.21 E-value=27 Score=42.44 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=27.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|+.+++.+++|+|||...+-.+...+. .+..++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~-----------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-----------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-----------CCCceEEEEecC
Confidence 3689999999999999765554444432 245677776543
No 476
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=42.09 E-value=11 Score=33.42 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=12.7
Q ss_pred EEEEecCCchHhHHH
Q 007829 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vi~~a~TGsGKTl~~ 197 (588)
+++.|+.|||||.+.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999664
No 477
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=42.02 E-value=12 Score=36.73 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 678889999999999955
No 478
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=41.95 E-value=11 Score=33.93 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCEEEEeCccccHHH-HHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007829 394 PPPVLIFCENKADVDD-IHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~-l~~~L~~---~g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~ 452 (588)
..++||+|+++.-+.. +.+.+.. .++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988777 5555543 3678888998764332221111 2467888885
No 479
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=41.79 E-value=11 Score=35.79 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.4
Q ss_pred CCEEEEecCCchHhHHHH
Q 007829 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~~ 198 (588)
.-++++|+.|||||...-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 457889999999996643
No 480
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.78 E-value=14 Score=33.75 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=14.0
Q ss_pred CEEEEecCCchHhHHHHH
Q 007829 182 DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~~l 199 (588)
.+++.+|+||||+..+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368889999999966433
No 481
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=41.66 E-value=3.8 Score=43.39 Aligned_cols=72 Identities=8% Similarity=0.190 Sum_probs=44.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHh-cCCcEEEeChHHHHHHHHccc
Q 007829 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVK-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~-~~~~IvV~Tp~~l~~~l~~~~ 294 (588)
+.++||.|+++.-|..+++.+.+. ++.+.+++|+.+..++ ...+. ...+|+||| +++ ..+
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~----------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT-----~~l-~~G 420 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD----------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT-----NVI-ARG 420 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT----------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEEC-----C------
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeC-----Chh-hcC
Confidence 467999999999988877766553 5677888887654332 33343 347899999 444 346
Q ss_pred CCCCCcceeeec
Q 007829 295 MNLDNCRYLTLD 306 (588)
Q Consensus 295 ~~l~~~~~lIvD 306 (588)
+++..+++||..
T Consensus 421 iDip~v~~VI~~ 432 (508)
T 3fho_A 421 IDVSQVNLVVNY 432 (508)
T ss_dssp CCCTTCCEEEC-
T ss_pred CCccCCCEEEEE
Confidence 778888888853
No 482
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=41.61 E-value=14 Score=33.53 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.5
Q ss_pred CEEEEecCCchHhHHH
Q 007829 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvi~~a~TGsGKTl~~ 197 (588)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999664
No 483
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.97 E-value=7.6 Score=36.68 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007829 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvi~~a~TGsGKTl~~ 197 (588)
+..++++|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346888999999999654
No 484
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=40.94 E-value=20 Score=40.93 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c----ccC-C-CCCC
Q 007829 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A----SKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLVaT~~-~----~~G-l-Dip~ 462 (588)
+.++||.++++.-+..++..+... ++.+..+||+.+...+...+. +..+|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999999888888777664 899999999987654332221 24679999952 1 122 3 5566
Q ss_pred cceEE
Q 007829 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77777
No 485
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=40.92 E-value=2.5e+02 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCc
Q 007829 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE 420 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~ 420 (588)
...+...+...+.+..|||.+-..+..+...|+..|+.
T Consensus 193 ~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 193 YRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 34455566666678899999998999999999988865
No 486
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=40.90 E-value=13 Score=34.52 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|.|||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566778899999999954
No 487
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=40.78 E-value=78 Score=34.61 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccC---------CC-----------CceEEEEEcCcchHHHHHHHh----
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAG---------YP-----------DLRTLLCIGGVDMRSQLEVVK---- 273 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~---------~~-----------~i~~~~~~gg~~~~~~~~~l~---- 273 (588)
.+..+||.||++.-+..+...+...+....... .+ ...+..++|+.+..++.....
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 356799999999999999888876532210000 00 124677899988766644332
Q ss_pred cCCcEEEeChHHHHHHHHcccCCCCCcceeee
Q 007829 274 RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTL 305 (588)
Q Consensus 274 ~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIv 305 (588)
...+|+|||. .+ ..++++..+.+||-
T Consensus 321 g~~~vlvaT~-----~l-~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 321 GNIKVVVATP-----TL-AAGVNLPARRVIVR 346 (702)
T ss_dssp TSCCEEEECS-----TT-TSSSCCCBSEEEEC
T ss_pred CCCeEEEECc-----HH-hccCCCCceEEEEc
Confidence 3579999993 33 34677888777554
No 488
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=40.70 E-value=58 Score=35.80 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccc-----------cCC------------CCceEEEEEcCcchHHHHHHH--
Q 007829 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRD-----------AGY------------PDLRTLLCIGGVDMRSQLEVV-- 272 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~-----------~~~------------~~i~~~~~~gg~~~~~~~~~l-- 272 (588)
.+..+||.||++.-+..++..+.+.+..+.. .+. -...+..++|+.+..++....
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 3567999999999999999888765332100 000 012478889998877664333
Q ss_pred -h-cCCcEEEeChHHHHHHHHcccCCCCCcceeeecCC
Q 007829 273 -K-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308 (588)
Q Consensus 273 -~-~~~~IvV~Tp~~l~~~l~~~~~~l~~~~~lIvDEa 308 (588)
. ...+|+||| +.+ ..++++..+.+| ||..
T Consensus 316 f~~g~~~vlvaT-----~~l-~~Gvdip~~~~V-I~~~ 346 (720)
T 2zj8_A 316 FRKGIIKAVVAT-----PTL-SAGINTPAFRVI-IRDI 346 (720)
T ss_dssp HHTTSSCEEEEC-----STT-GGGCCCCBSEEE-ECCS
T ss_pred HHCCCCeEEEEC-----cHh-hccCCCCceEEE-EcCC
Confidence 2 347999999 333 346677777764 4433
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=40.59 E-value=12 Score=34.67 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|.|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677788999999999954
No 490
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=40.44 E-value=12 Score=35.93 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788899999999954
No 491
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=40.25 E-value=14 Score=38.73 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.9
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999664
No 492
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=40.19 E-value=21 Score=39.63 Aligned_cols=79 Identities=16% Similarity=0.072 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-----------CEE
Q 007829 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGR-----------DMI 184 (588)
Q Consensus 116 ~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~-----------dvi 184 (588)
..+.+++...-..|. .+|.+...+++......+.+.|... +......-......+...+ +++
T Consensus 420 ~v~~~di~~~~~~~~------~ip~~~~~~~~~~~l~~l~~~l~~~-v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~l 492 (758)
T 1r6b_X 420 TVNVADIESVVARIA------RIPEKSVSQSDRDTLKNLGDRLKML-VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFL 492 (758)
T ss_dssp SCCHHHHHHHHHHHS------CCCCCCSSSSHHHHHHHHHHHHTTT-SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEE
T ss_pred ccCHHHHHHHHHHhc------CCCccccchhHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEE
Q ss_pred EEecCCchHhHHHHHHH
Q 007829 185 GIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 185 ~~a~TGsGKTl~~~lp~ 201 (588)
+.||||+|||.++-..+
T Consensus 493 l~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 493 FAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
No 493
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=40.04 E-value=12 Score=33.20 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.0
Q ss_pred EEEEecCCchHhHHHH
Q 007829 183 MIGIAFTGSGKTLVFV 198 (588)
Q Consensus 183 vi~~a~TGsGKTl~~~ 198 (588)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999996643
No 494
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=39.91 E-value=16 Score=32.91 Aligned_cols=17 Identities=24% Similarity=0.014 Sum_probs=13.3
Q ss_pred CCEEEEecCCchHhHHH
Q 007829 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvi~~a~TGsGKTl~~ 197 (588)
.-+.+.+++|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34677799999999654
No 495
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=39.83 E-value=13 Score=35.57 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999955
No 496
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=39.53 E-value=2.3e+02 Score=28.17 Aligned_cols=90 Identities=12% Similarity=0.038 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCEEEEecCCc-hHhHHHHHHHHHHHHhhcccCCCCCCCC-CEEEEEcCCHHHHHHHHHHHHHHhhcccc
Q 007829 171 VQGLPVVLSGRDMIGIAFTGS-GKTLVFVLPMIMIAMHEEMMMPIVPGEG-PFCLIVCPSRELARQTYEVVEQFLTPMRD 248 (588)
Q Consensus 171 ~~~i~~il~g~dvi~~a~TGs-GKTl~~~lp~l~~~~~~~~~~~~~~~~~-~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~ 248 (588)
...+...+.++.+++.+.||. |..++-.| .. .| ..++++.-+..-..++...+.....
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~~~L------~~----------~g~~~V~~~~r~~~~~~~~~~~l~~~~~---- 85 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVTKEI------FK----------RNPQKLHVVDISENNMVELVRDIRSSFG---- 85 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHHHHH------HT----------TCCSEEEEECSCHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHHHHH------HH----------CCCCEEEEEECCcchHHHHHHHHHHhcC----
Confidence 344556678999999999885 66655332 22 45 3666666665555555555554432
Q ss_pred cCCCCceEEEEEcCcchHHHHHHHh--cCCcEEEeC
Q 007829 249 AGYPDLRTLLCIGGVDMRSQLEVVK--RGVHIVVAT 282 (588)
Q Consensus 249 ~~~~~i~~~~~~gg~~~~~~~~~l~--~~~~IvV~T 282 (588)
..+..+..+.++.........+. .++++||-.
T Consensus 86 --~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 86 --YINGDFQTFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp --CCSSEEEEECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred --CCCCcEEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 11345667777665555444443 467887744
No 497
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=39.31 E-value=14 Score=30.93 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007829 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4568999999988899999999999996 888999853
No 498
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=39.20 E-value=12 Score=47.73 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=17.5
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007829 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvi~~a~TGsGKTl~~ 197 (588)
..++.++++||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 37899999999999999664
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=39.16 E-value=13 Score=35.15 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCchHhHH
Q 007829 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~ 196 (588)
.|.-+.+++|.|||||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999954
No 500
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.13 E-value=16 Score=33.70 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007829 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvi~~a~TGsGKTl~~~l 199 (588)
..+-+++.+|.||||+..+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345567889999999866433
Done!