BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007830
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/314 (50%), Positives = 200/314 (63%), Gaps = 5/314 (1%)
Query: 279 PDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGK 338
P+ VA DGSGDY T+ AVAA + S TR+VI +K G YRENV + K + N+M GDG+
Sbjct: 7 PNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66
Query: 339 TMTIVSGSLNFVDGXXXXXXXXXXXXGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVF 398
T TI++ S N DG G GF+A+D+TF NTAG KHQAVA R GSD S F
Sbjct: 67 TSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126
Query: 399 YRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTIT 458
YRC AYQD+LY HSNRQF+ +C I GT+DFIFGNAAVV Q+C+I R+P Q N +T
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVT 186
Query: 459 AQGKKDPNQNTGISIQKCTLSRFDD----KLTAATYLGRPWKEFSTTVIMQSTIGPFLNA 514
AQG+ DPNQNTGI IQK + D + + TYLGRPWKE+S TV+MQS+I +N
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246
Query: 515 LGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGS 574
GW W G +++Y EYQN G G+ TSGRV W G++ ++ EA FT G+FI G
Sbjct: 247 AGWFPW-DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305
Query: 575 EWLAEANVQYQESL 588
WL + L
Sbjct: 306 SWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 318 bits (815), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 161/313 (51%), Positives = 199/313 (63%), Gaps = 5/313 (1%)
Query: 280 DATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKT 339
+A VAQDG+GDY T+ AVAA KS TR+VIYVK+GTY+ENV + ++ N+M+ GDG
Sbjct: 4 NAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMY 63
Query: 340 MTIVSGSLNFVDGXXXXXXXXXXXXGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFY 399
T ++GSLN VDG G+GFI +D+ NTAGP K QAVA R G+D SV
Sbjct: 64 ATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVIN 123
Query: 400 RCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITA 459
RC +AYQDTLYAHS RQFYRD +TGT+DFIFGNAAVVFQ C ++ R+P Q N +TA
Sbjct: 124 RCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTA 183
Query: 460 QGKKDPNQNTGISIQKCTLSRFDDKLTA----ATYLGRPWKEFSTTVIMQSTIGPFLNAL 515
QG+ DPNQ TG SIQ C + D TYLGRPWKE+S TV+M+S +G +N
Sbjct: 184 QGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPA 243
Query: 516 GWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSE 575
GW EW G +++Y E+ N G G+ TS RVKW GY +A FTV IQG
Sbjct: 244 GWAEW-DGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302
Query: 576 WLAEANVQYQESL 588
WL V Y + L
Sbjct: 303 WLRSTGVAYVDGL 315
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 143/326 (43%), Gaps = 64/326 (19%)
Query: 291 YDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFV 350
+ TI A+A+ S T FVI +K G Y E + + +R N+ + G+ + +++ +
Sbjct: 18 FKTIADAIASAPAGS-TPFVILIKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 351 ----DGXX--XXXXXXXXXXGRGFIAKDMTFIN--------------TAGPEKHQAVAF- 389
DG + F A+ +T N ++ + QAVA
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 390 --RSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPR 447
+SG DR+ F S YQDTLY R F+ DC I+GT+DFIFG+ +F NC+++ R
Sbjct: 135 VTKSG-DRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSR 193
Query: 448 QPLPNQFNTITA---QGKKDPNQNTGISIQKCTLSRFDDKLTAATY-LGRPWKEFST--- 500
+ ++ + NQ G+ I + R D + A +Y LGRPW +T
Sbjct: 194 YRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSD 253
Query: 501 -----------TVIMQSTIGPFLNALGWKEWVSGVD---------PPTSIFYAEYQNVGL 540
TV + +++ + GW + +SG D P S F+ EY++ G
Sbjct: 254 GRYADPNAIGQTVFLNTSMDNHI--YGWDK-MSGKDKNGNTIWFNPEDSRFF-EYKSYGA 309
Query: 541 GSPTSGRVKWAGYRPTLTTDEAAKFT 566
G+ S R LT +AA++T
Sbjct: 310 GAAVSKD------RRQLTDAQAAEYT 329
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 143/326 (43%), Gaps = 64/326 (19%)
Query: 291 YDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFV 350
+ TI A+A+ S T FVI +K G Y E + + +R N+ + G+ + +++ +
Sbjct: 18 FKTIADAIASAPAGS-TPFVILIKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 351 ----DGXX--XXXXXXXXXXGRGFIAKDMTFIN--------------TAGPEKHQAVAF- 389
DG + F A+ +T N ++ + QAVA
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 390 --RSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPR 447
+SG DR+ F S YQDTLY R F+ DC I+GT+DFIFG+ +F NC+++ R
Sbjct: 135 VTKSG-DRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSR 193
Query: 448 QPLPNQFNTITA---QGKKDPNQNTGISIQKCTLSRFDDKLTAATY-LGRPWKEFST--- 500
+ ++ + NQ G+ I + R D + A +Y LGRPW +T
Sbjct: 194 YRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSD 253
Query: 501 -----------TVIMQSTIGPFLNALGWKEWVSGVD---------PPTSIFYAEYQNVGL 540
TV + +++ + GW + +SG D P S F+ EY++ G
Sbjct: 254 GRYADPNAIGQTVFLNTSMDNHI--YGWDK-MSGKDKNGNTIWFNPEDSRFF-EYKSYGA 309
Query: 541 GSPTSGRVKWAGYRPTLTTDEAAKFT 566
G+ S R LT +AA++T
Sbjct: 310 GATVSKD------RRQLTDAQAAEYT 329
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 142/326 (43%), Gaps = 64/326 (19%)
Query: 291 YDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFV 350
+ TI A+A+ S T FVI +K G Y E + + +R N+ + G+ + +++ +
Sbjct: 18 FKTIADAIASAPAGS-TPFVILIKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 351 ----DGXX--XXXXXXXXXXGRGFIAKDMTFIN--------------TAGPEKHQAVAF- 389
DG + F A+ +T N ++ + QAVA
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 390 --RSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPR 447
+SG DR+ F S YQ TLY R F+ DC I+GT+DFIFG+ +F NC+++ R
Sbjct: 135 VTKSG-DRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSR 193
Query: 448 QPLPNQFNTITA---QGKKDPNQNTGISIQKCTLSRFDDKLTAATY-LGRPWKEFST--- 500
+ ++ + NQ G+ I + R D + A +Y LGRPW +T
Sbjct: 194 YRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSD 253
Query: 501 -----------TVIMQSTIGPFLNALGWKEWVSGVD---------PPTSIFYAEYQNVGL 540
TV + +++ + GW + +SG D P S F+ EY++ G
Sbjct: 254 GRYADPNAIGQTVFLNTSMDNHI--YGWDK-MSGKDKNGNTIWFNPEDSRFF-EYKSYGA 309
Query: 541 GSPTSGRVKWAGYRPTLTTDEAAKFT 566
G+ S R LT +AA++T
Sbjct: 310 GATVSKD------RRQLTDAQAAEYT 329
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 35/267 (13%)
Query: 263 WVGAGDRRLLQEANP-KPDATVAQDGSGD-YDTIKAAVAAVRKKSPTRFVIYVKKGTYRE 320
W+G +L N + +A V+ GD + +I AA+ + K T F+I++K G Y E
Sbjct: 14 WLGLISFAVLGTVNAAQYNAVVSTTPQGDEFSSINAALKSAPKDD-TPFIIFLKNGVYTE 72
Query: 321 NVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGXXXXXXXXXXXXGRG--------FIAKD 372
L+ +R +V + G+ + T++ N G G F A++
Sbjct: 73 R--LEVARSHVTLKGENRDGTVIGA--NTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAEN 128
Query: 373 MTFINT-----------AGPEK---HQAVAF--RSGSDRSVFYRCSFNAYQDTLYAHS-N 415
+T N P K QAVA SD++ F YQDTLY+ + +
Sbjct: 129 LTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGS 188
Query: 416 RQFYRDCDITGTIDFIFGNAAVVFQNCNILP--RQPLPNQFNTITAQGKKDPNQNTGISI 473
R ++ DC+I+G +DFIFG+ VF NCNI+ R + + ITA G+
Sbjct: 189 RSYFSDCEISGHVDFIFGSGITVFDNCNIVARDRSDIEPPYGYITAPSTLT-TSPYGLIF 247
Query: 474 QKCTLSRFDDKLTAATYLGRPWKEFST 500
L++ + LGRPW +T
Sbjct: 248 INSRLTKEPGVPANSFALGRPWHPTTT 274
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 178 QDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSL 230
+DL WL +T++D ++E N+ +LK IRS +Q + E A +S+
Sbjct: 699 KDLAEWLEKQLTEEDGVHSVIEE-NIKCISRDYVLKQIRSLVQANPEVAMDSI 750
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 78/220 (35%), Gaps = 55/220 (25%)
Query: 278 KPDATVAQDGSGD--YDTIKAAV-AAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMY 334
+PD V G+ + TI+AAV AA+ K++ R I V G Y+ V + + + +Y
Sbjct: 74 QPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLY 133
Query: 335 GDG------KTMTIVSGSLNFVDGXXXXXXXXXXXXGR---------------------- 366
G G K + G ++ D G+
Sbjct: 134 GTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCS 193
Query: 367 --------GFIAKDMTFINTAGPE----KHQAVAFRSGSDRSVFYRCSFNAYQDTLYA-- 412
G +++T NT G H AVA R+ D+ + Q+T +
Sbjct: 194 AVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTN 253
Query: 413 -------HSNRQ---FYRDCDITGTIDFIFGNAAVVFQNC 442
+NRQ + I G +D + G AVVF N
Sbjct: 254 SGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNT 293
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 75 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 110
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 73 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 108
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 74 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 109
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 57 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 92
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 74 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 109
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 74 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 109
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 57 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 92
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 74 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 109
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 247 VHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQ 285
VH + DH+D GFP+ G + R+++E K DA V++
Sbjct: 74 VHSEFMHDHADYGFPSCEGKFNWRVIKE---KRDAYVSR 109
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 387 VAFRSGSDRSVFYRCSFNAYQDTLYA---------HSNRQFYRDCDITGTIDFIFGN 434
V SG+ S F R + ++ LYA N+ + DC +GTIDF FGN
Sbjct: 215 VLLDSGTTISYFTR---SIVRNILYAIGAQMKFDSAGNKVYVADCKTSGTIDFQFGN 268
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 75 LKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTK 134
+ +C TR P + +KD + L + S+ +A + + L Q
Sbjct: 6 ISEICPKTRNPSLCLQALESDPR-SASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQAT 64
Query: 135 DPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQDTC 194
DP++ + C + DA+D +G ++ L+S L + S + TC
Sbjct: 65 DPKLKGRYETCSENYADAID---------SLGQAKQFLTSGDYNSLNIYASAAFDGAGTC 115
Query: 195 LDALQ 199
D+ +
Sbjct: 116 EDSFE 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,879,526
Number of Sequences: 62578
Number of extensions: 617568
Number of successful extensions: 1408
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 26
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)