Your job contains 1 sequence.
>007831
MMEEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKR
DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKK
ACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG
RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE
QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC
RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV
GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE
AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH
RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITN
ASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007831
(588 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2176192 - symbol:AT5G51280 species:3702 "Arabi... 2611 1.5e-271 1
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi... 2195 6.5e-234 2
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 1775 6.0e-183 1
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 1766 5.4e-182 1
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 1766 5.4e-182 1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 1765 6.8e-182 1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 1764 8.7e-182 1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 1762 1.4e-181 1
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 1762 1.4e-181 1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 1754 1.0e-180 1
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 1753 1.3e-180 1
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros... 1635 4.2e-171 2
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 1642 8.8e-171 2
ZFIN|ZDB-GENE-030131-1927 - symbol:ddx41 "DEAD (Asp-Glu-A... 1551 3.2e-159 1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 1475 3.7e-151 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 789 1.8e-78 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 789 1.8e-78 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 781 1.3e-77 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 778 2.7e-77 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 778 2.7e-77 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 778 2.7e-77 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 775 5.5e-77 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 755 6.6e-77 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 747 2.9e-76 2
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 427 3.8e-76 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 427 3.8e-76 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 427 3.8e-76 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 427 3.8e-76 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 765 6.3e-76 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 763 1.0e-75 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 761 1.7e-75 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 760 2.1e-75 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 760 2.1e-75 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 741 2.5e-75 2
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 741 2.5e-75 2
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 741 2.5e-75 2
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 741 2.5e-75 2
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 741 2.5e-75 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 739 4.1e-75 2
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 739 4.1e-75 2
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 739 4.1e-75 2
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 739 4.1e-75 2
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 739 4.1e-75 2
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 739 4.1e-75 2
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 739 4.1e-75 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 737 4.1e-75 2
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 737 6.7e-75 2
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 734 1.4e-74 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 722 2.9e-74 2
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 728 5.9e-74 2
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 746 6.5e-74 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 745 8.4e-74 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 745 8.4e-74 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 744 1.1e-73 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 744 1.1e-73 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 743 1.4e-73 1
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 743 1.4e-73 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 723 1.6e-73 2
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 741 2.2e-73 1
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 413 2.2e-73 3
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 740 2.8e-73 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 739 3.6e-73 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 739 3.6e-73 1
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 738 4.6e-73 1
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 738 4.6e-73 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 736 7.5e-73 1
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 736 7.5e-73 1
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 716 8.6e-73 2
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 716 8.6e-73 2
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 735 9.6e-73 1
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 735 9.6e-73 1
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 734 1.2e-72 1
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 400 2.6e-72 3
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 728 5.3e-72 1
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 728 5.3e-72 1
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 727 6.7e-72 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 724 1.4e-71 1
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 723 1.8e-71 1
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 723 1.8e-71 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 723 1.8e-71 1
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 713 1.8e-71 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 721 2.9e-71 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 719 4.8e-71 1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 719 4.8e-71 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 717 7.7e-71 1
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 716 9.9e-71 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 715 1.3e-70 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 714 1.6e-70 1
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 714 1.6e-70 1
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 713 2.1e-70 1
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 713 2.1e-70 1
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 713 2.1e-70 1
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 713 2.1e-70 1
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 713 2.1e-70 1
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 712 2.6e-70 1
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 712 2.6e-70 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 712 2.6e-70 1
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 711 3.3e-70 1
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 709 5.5e-70 1
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 709 5.5e-70 1
WARNING: Descriptions of 865 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 2611 (924.2 bits), Expect = 1.5e-271, P = 1.5e-271
Identities = 503/588 (85%), Positives = 541/588 (92%)
Query: 1 MMEEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKR 60
+MEE D Y+EYV +A+RRA+ AQKILQRKG+AS LE+E +K KLAE KPSLLV+A+QLKR
Sbjct: 4 IMEEADSYIEYVSVAERRAIAAQKILQRKGKASELEEEADKEKLAEAKPSLLVQATQLKR 63
Query: 61 DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKK 120
D PE+S TEQI+ QEKEM+E+LSD+KTLMSVRELAKGITYT+PLLTGWKPPL IR+MS K
Sbjct: 64 DVPEVSATEQIILQEKEMMEHLSDKKTLMSVRELAKGITYTEPLLTGWKPPLHIRKMSSK 123
Query: 121 ACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG 180
DLIRKQWHIIV+G+DIPPPIKNFKDM+FP P+L LK KGIVQPTPIQVQGLPV+L+G
Sbjct: 124 QRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAG 183
Query: 181 RDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVE 240
RDMIGIAFTGSGKTLVFVL GEGP LIVCPSRELARQTYEVVE
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300
QF+ P+ +AGYP LR+LLCIGG+DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM+LD C
Sbjct: 244 QFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDAC 303
Query: 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
RYLTLDEADRLVDLGFEDDIREVFDHFK+QRQTLLFSATMPTKIQ FARSALVKPVTVNV
Sbjct: 304 RYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNV 363
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE 420
GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCENKADVDDIHEYLLLKGVE
Sbjct: 364 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVE 423
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
AVA+HGGKDQE+REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH
Sbjct: 424 AVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
Query: 481 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITN 540
RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME+ + I N
Sbjct: 484 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIAN 543
Query: 541 ASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI 588
ASGVKGCAYCGGLGHRIRDCPKLEHQKS+AI++SR+DYFGSGGYRGEI
Sbjct: 544 ASGVKGCAYCGGLGHRIRDCPKLEHQKSVAISNSRKDYFGSGGYRGEI 591
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 2195 (777.7 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 422/520 (81%), Positives = 461/520 (88%)
Query: 70 QIVQQE-KEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQ 128
++V++ K M+E+LSD+K LMSV ELA+GITYT+PL T WKPPL +R+MS K DLIRKQ
Sbjct: 23 KVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQ 82
Query: 129 WHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAF 188
WHI V+GEDIPPPIKNF DM+FP P+L+ LK KGI+ PTPIQVQGLPVVLSGRDMIGIAF
Sbjct: 83 WHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAF 142
Query: 189 TGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRD 248
TGSGKTLVFVL GEGP L++CPSRELA+QTY+VVEQF+ + +
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 249 AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308
GYP LR+LLCIGGVDMRSQL+VVK+GVHIVVATPGRLKD+LAKKKM+LD CR LTLDEA
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEA 262
Query: 309 DRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL 368
DRLVDLGFEDDIR VFDHFK+QRQTLLFSATMP KIQ FA SALVKPVTVNVGRAGAANL
Sbjct: 263 DRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANL 322
Query: 369 DVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGK 428
DVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCENKADVDDIHEYLLLKGVEAVA+HGGK
Sbjct: 323 DVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGK 382
Query: 429 DQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488
DQE+R+YAIS FKAGKKDVLVATDVASKGLDFPDIQHVINYDMP EIENYVHRIGRTGRC
Sbjct: 383 DQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRC 442
Query: 489 GKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCA 548
GKTGIATTFINKNQSE TLLDLKHLLQEAKQRIPPVLAELN PME+ + I NASGVKGCA
Sbjct: 443 GKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCA 502
Query: 549 YCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI 588
YCGGLGHRI CPK EHQKS+AI+SSR+D+FGS GYRGE+
Sbjct: 503 YCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV 542
Score = 84 (34.6 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 2 MEEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEV 47
ME +D YVEYVP+ +R A +K+++ G+ +E +K KL V
Sbjct: 1 MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGM-MEHLSDKKKLMSV 45
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 1775 (629.9 bits), Expect = 6.0e-183, P = 6.0e-183
Identities = 349/590 (59%), Positives = 450/590 (76%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAE-------VKP----SL 51
E+++DYV YVP+ +RR + QK+LQR+ + +T E++ + + P SL
Sbjct: 28 EDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATEEEQQDSGSEPRGDEDDIPLGPQSNVSL 87
Query: 52 LVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWK 109
L + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W
Sbjct: 88 LDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWT 147
Query: 110 PPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI+ PTPI
Sbjct: 148 PPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPI 207
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CPSR
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 267
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+
Sbjct: 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327
Query: 290 LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+
Sbjct: 328 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 387
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDD 409
SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADVD
Sbjct: 388 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDA 447
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVINY
Sbjct: 448 IHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 507
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+
Sbjct: 508 DMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH 567
Query: 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
D +++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY
Sbjct: 568 --CGD-ESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
Identities = 348/590 (58%), Positives = 448/590 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAE-------VKP----SL 51
E+++DYV YVP+ +RR + QK+LQR+ + + E++ + + P SL
Sbjct: 46 EDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSL 105
Query: 52 LVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWK 109
L + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W
Sbjct: 106 LDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWT 165
Query: 110 PPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI PTPI
Sbjct: 166 PPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPI 225
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CPSR
Sbjct: 226 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 285
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+
Sbjct: 286 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 345
Query: 290 LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+
Sbjct: 346 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 405
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDD 409
SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADVD
Sbjct: 406 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDA 465
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVINY
Sbjct: 466 IHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 525
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+
Sbjct: 526 DMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH 585
Query: 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
D +++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY
Sbjct: 586 --CGD-ESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 632
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
Identities = 348/590 (58%), Positives = 448/590 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAE-------VKP----SL 51
E+++DYV YVP+ +RR + QK+LQR+ + + E++ + + P SL
Sbjct: 28 EDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSL 87
Query: 52 LVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWK 109
L + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W
Sbjct: 88 LDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWT 147
Query: 110 PPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI PTPI
Sbjct: 148 PPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPI 207
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CPSR
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 267
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+
Sbjct: 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327
Query: 290 LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+
Sbjct: 328 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 387
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDD 409
SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADVD
Sbjct: 388 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDA 447
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVINY
Sbjct: 448 IHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 507
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+
Sbjct: 508 DMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH 567
Query: 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
D +++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY
Sbjct: 568 --CGD-ESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
Identities = 348/590 (58%), Positives = 447/590 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAE-------VKP----SL 51
E+++DYV YVP+ +RR + QK+LQR+ + + E++ + + P SL
Sbjct: 28 EDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSL 87
Query: 52 LVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWK 109
L + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W
Sbjct: 88 LDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWT 147
Query: 110 PPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI PTPI
Sbjct: 148 PPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPI 207
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CPSR
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 267
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+
Sbjct: 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327
Query: 290 LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+
Sbjct: 328 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 387
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDD 409
SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADVD
Sbjct: 388 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDA 447
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVINY
Sbjct: 448 IHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 507
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+
Sbjct: 508 DMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH 567
Query: 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
D +++ G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY
Sbjct: 568 --CGD-ESMLEIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 1764 (626.0 bits), Expect = 8.7e-182, P = 8.7e-182
Identities = 347/590 (58%), Positives = 448/590 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAE-------VKP----SL 51
E+++DYV YVP+ +RR + QK+LQR+ + + E++ + + P SL
Sbjct: 28 EDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSL 87
Query: 52 LVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWK 109
L + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W
Sbjct: 88 LDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWT 147
Query: 110 PPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+ P IL+ LK KGI+ PTPI
Sbjct: 148 PPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPI 207
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CPSR
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 267
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+
Sbjct: 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327
Query: 290 LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+
Sbjct: 328 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 387
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDD 409
SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADVD
Sbjct: 388 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDA 447
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVINY
Sbjct: 448 IHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 507
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+
Sbjct: 508 DMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH 567
Query: 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
D +++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY
Sbjct: 568 --CGD-ESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
Identities = 347/590 (58%), Positives = 448/590 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAE-------VKP----SL 51
E++++YV YVP+ +RR + QK+LQR+ + + E++ + + P SL
Sbjct: 28 EDDEEYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSL 87
Query: 52 LVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWK 109
L + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W
Sbjct: 88 LDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWT 147
Query: 110 PPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI PTPI
Sbjct: 148 PPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPI 207
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CPSR
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 267
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+
Sbjct: 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327
Query: 290 LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+
Sbjct: 328 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 387
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDD 409
SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADVD
Sbjct: 388 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDA 447
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVINY
Sbjct: 448 IHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 507
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+
Sbjct: 508 DMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH 567
Query: 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
D +++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY
Sbjct: 568 --CGD-ESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
Identities = 347/590 (58%), Positives = 448/590 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAE-------VKP----SL 51
E++++YV YVP+ +RR + QK+LQR+ + + E++ + + P SL
Sbjct: 55 EDDEEYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSL 114
Query: 52 LVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWK 109
L + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W
Sbjct: 115 LDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWT 174
Query: 110 PPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI PTPI
Sbjct: 175 PPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPI 234
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CPSR
Sbjct: 235 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 294
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+
Sbjct: 295 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 354
Query: 290 LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+
Sbjct: 355 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 414
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDD 409
SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADVD
Sbjct: 415 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDA 474
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVINY
Sbjct: 475 IHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 534
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+
Sbjct: 535 DMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH 594
Query: 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
D +++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY
Sbjct: 595 --CGD-ESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 641
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 1754 (622.5 bits), Expect = 1.0e-180, P = 1.0e-180
Identities = 346/592 (58%), Positives = 449/592 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVK---------P---- 49
+E++DYV YVP+ +RR + QK+LQ++ + + E++ + +E + P
Sbjct: 25 DEDEDYVPYVPLRQRRQLLLQKLLQQRRKGAAEEEQQDSGSGSEPRGDEDNITLGPQSNV 84
Query: 50 SLLVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTG 107
SLL + +LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T
Sbjct: 85 SLLDQHQRLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTS 144
Query: 108 WKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPT 167
W PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+ P IL+ LK KGI+ PT
Sbjct: 145 WTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPT 204
Query: 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCP 227
PIQ+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CP
Sbjct: 205 PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICP 264
Query: 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK 287
SRELARQT+ ++E + +++ P L LCIGGV ++ Q+E ++ GVHI+VATPGRL
Sbjct: 265 SRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVATPGRLM 324
Query: 288 DMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347
D+L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNF
Sbjct: 325 DLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNF 384
Query: 348 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADV 407
A+SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF + KADV
Sbjct: 385 AKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAKKKADV 444
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
D IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVI
Sbjct: 445 DAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVI 504
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYDMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL
Sbjct: 505 NYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQV 564
Query: 528 LNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 578
L+ D +++ + G +GCA+CGGLGHRI DCPKLE ++ +++ +DY
Sbjct: 565 LH--CGD-ESMLDIGGEQGCAFCGGLGHRITDCPKLEAMQTKQVSNIGHKDY 613
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 1753 (622.1 bits), Expect = 1.3e-180, P = 1.3e-180
Identities = 348/589 (59%), Positives = 443/589 (75%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQ--RK-----------GQASTLEDELEKSKLAEVKP 49
E+++DYV YVP+ +R+ QK+LQ RK G+ ED++ + +
Sbjct: 24 EDDEDYVPYVPVKQRKQQMLQKLLQMRRKVVSEEEQRDSGGEQRGDEDDIPLGPQSNI-- 81
Query: 50 SLLVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTG 107
SLL + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T
Sbjct: 82 SLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTS 141
Query: 108 WKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPT 167
W+ P I MS+ + +RK++HI+V+GE IPPPIK+FK+M+FP IL+ LK KGI QPT
Sbjct: 142 WRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKFPAAILRGLKKKGIQQPT 201
Query: 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCP 227
PIQ+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CP
Sbjct: 202 PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICP 261
Query: 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK 287
SRELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E +K GVH++VATPGRL
Sbjct: 262 SRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPGRLM 321
Query: 288 DMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347
D+L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNF
Sbjct: 322 DLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNF 381
Query: 348 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADV 407
A+SALVKP+T+NVGRAGAA+LDV+QEVEYVK+EAK+VYLLECLQKTPPPVLIF E KADV
Sbjct: 382 AKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADV 441
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
D IHEYLLLKGVEAVA+HGGKDQEER AI +F+ GKKDVLVATDVASKGLDFP IQHVI
Sbjct: 442 DAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVI 501
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYDMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL
Sbjct: 502 NYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQV 561
Query: 528 LNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRR 576
L+ D + + + G +GCA+CGGLGHRI DCPKLE ++ +++ R
Sbjct: 562 LH--CGD-ETMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGR 607
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 1635 (580.6 bits), Expect = 4.2e-171, Sum P(2) = 4.2e-171
Identities = 318/535 (59%), Positives = 400/535 (74%)
Query: 50 SLLVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTG 107
SLL + ++LK+ + ++S E+ +++E++++E+++ +K LM V ELAKGI Y P+ T
Sbjct: 82 SLLDQHTELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTA 141
Query: 108 WKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPT 167
WKPP IR MS++ + +R + I+V+GE PPI++F++M+FP+ IL L AKGI PT
Sbjct: 142 WKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPT 201
Query: 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCP 227
PIQVQGLP VL+GRD+IGIAFTGSGKTLVFVL EGP+ LI+CP
Sbjct: 202 PIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICP 261
Query: 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK 287
SRELA+QT+E+++ + ++ G P++R+ L +GG+ + L+V+ RGVHIVVATPGRL
Sbjct: 262 SRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLM 321
Query: 288 DMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347
DML KK + LD CRYL +DEADR++D+GFE+D+R +F FK QRQTLLFSATMP KIQNF
Sbjct: 322 DMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNF 381
Query: 348 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADV 407
ARSALVKPVT+NVGRAGAA+++V Q+VEYVKQEAK+VYLL+CLQKT PPVLIF E K DV
Sbjct: 382 ARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDV 441
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
D IHEYLLLKGVEAVA+HGGKDQEER A+ +++ GKKDVLVATDVASKGLDFP++QHVI
Sbjct: 442 DCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVI 501
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYDMP +IENYVHRIGRTGR G+ATT INK ++ LLDLKHLL E KQ +P L E
Sbjct: 502 NYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDE 561
Query: 528 LNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEH-QKSMAIASSRRDYFGS 581
L E S GC YCGGLGHRI +CPKLE Q A RRDY +
Sbjct: 562 LAPETEHQHLDLGDS--HGCTYCGGLGHRITECPKLEAVQNKQASNIGRRDYLSN 614
Score = 50 (22.7 bits), Expect = 4.2e-171, Sum P(2) = 4.2e-171
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKI 25
+ +DYV YVP+ +R+ K+
Sbjct: 20 DNEDYVPYVPVKERKKQHMIKL 41
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 1642 (583.1 bits), Expect = 8.8e-171, Sum P(2) = 8.8e-171
Identities = 322/534 (60%), Positives = 400/534 (74%)
Query: 61 DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKK 120
++ +I +++ +E +++++L K L+SV++ AK + YTD + T W+ P I +K
Sbjct: 140 EENKIKEEKRLDMEESDILKSLKTFKPLVSVKDRAKDVIYTDSIKTNWRAPRYILERDEK 199
Query: 121 ACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG 180
+R Q +II DGEDIPPPI FK+M+ P+P++ L KGI +P+PIQVQGLPV+LSG
Sbjct: 200 DHQKVRDQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSG 259
Query: 181 RDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVE 240
RDMIGIA+TGSGKTLVF L + GEGPF LI+CPSRELARQTY++V
Sbjct: 260 RDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVN 319
Query: 241 QFLTPM-RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299
F + ++ G+P LRTLL IGG+D+R Q + K+GVH+++ATPGRL D+L KKK+N
Sbjct: 320 SFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKL 379
Query: 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVN 359
C+YL LDEADRL+DLGFEDDIR V D+F QRQTLLFSATMP KIQ FARSALV PV VN
Sbjct: 380 CKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVN 439
Query: 360 VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGV 419
VGRAGAANL+V QEVE+VK EAKIVYLLECLQKTPPPVLIFCENK DVDDI+EYLLLK V
Sbjct: 440 VGRAGAANLNVTQEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQV 499
Query: 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 479
EAV++HG K Q+ERE AI +F+ GKKDVLVATDVASKGLDFP+IQHVIN+DMP EIENY+
Sbjct: 500 EAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYI 559
Query: 480 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAIT 539
HRIGRTGR G G+ATTFINKN +E+ LLDLK+LL EAKQ++PP L E+ D + + +
Sbjct: 560 HRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQ 619
Query: 540 NASG----------VKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
+ +G K C YC G GHR+ +CPKL+ Q A +RD+FGSGG
Sbjct: 620 DRNGNTGGGADDDDTKPCEYCDGRGHRLVNCPKLKKQ-----AGPKRDFFGSGG 668
Score = 40 (19.1 bits), Expect = 8.8e-171, Sum P(2) = 8.8e-171
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 39 LEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKT 87
L++ KL ++K L + LK+ QP+ +Q +Q N + T
Sbjct: 21 LKERKLNQIKSKL----NNLKQQQPQQHSQQQENEQNNATATNTNITNT 65
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 1551 (551.0 bits), Expect = 3.2e-159, P = 3.2e-159
Identities = 303/476 (63%), Positives = 365/476 (76%)
Query: 108 WKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPT 167
W P I M + +RK++HI+V+GE IP PIK+F++M+FP+ ILK LK KGIV PT
Sbjct: 2 WNAPRYILSMPAVRHERVRKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPT 61
Query: 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCP 227
PIQ+QG+P +LSGRDMIGIAFTGSGKTLVF L EGP+ LI+CP
Sbjct: 62 PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEKRLPFCKREGPYGLIICP 121
Query: 228 SRELARQTYE-VVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL 286
S +A+ T+ ++E + + D G P +R LCIGG+ ++ Q+EVVK +ATPGRL
Sbjct: 122 SVNVAKHTHHGIIEYYCKLLEDEGAPQMRCALCIGGMSVKEQMEVVK------LATPGRL 175
Query: 287 KDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
D+L KK ++LD CRYL LDEADR++D+GFE+DIR +F +FK QRQTLLFSATMP KIQN
Sbjct: 176 MDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQN 235
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKAD 406
FA+SALVKP+T+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E KAD
Sbjct: 236 FAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKAD 295
Query: 407 VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466
VD IHEYLLLKGVEAVA+HGGKDQEER AI +FK GKKDVLVATDVASKGLDFP IQHV
Sbjct: 296 VDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHV 355
Query: 467 INYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526
+NYDMP EIENYVHRIGRTGR GKTGIATTFINK E+ L+DLK LL EAKQ++PPVL
Sbjct: 356 VNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDLKALLVEAKQKVPPVLQ 415
Query: 527 ELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDYFGS 581
L+ E + + G +GC +CGGLGHRI DCPKLE ++ + + R+DY +
Sbjct: 416 VLHTGDE---TMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTNIGRKDYLAN 468
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
Identities = 303/577 (52%), Positives = 400/577 (69%)
Query: 17 RRAMEAQKILQRKGQASTLEDELEKSK----LAEVKPSLLVKASQLKRDQPEISPTEQIV 72
RRA+ Q + Q +E + +K + E + +LL K +++ Q I +E+ +
Sbjct: 59 RRALLKQVLAPTMNQKEEIERKRKKKEEDKQSEEARKTLLEKHAEIMETQGVIDESERQL 118
Query: 73 QQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHII 132
+E+E+++ ++ L++V EL KG Y +P++T W+PP IRR S++ ++ RK+ I
Sbjct: 119 MEEEELLDKVTRGGGLLAVAELTKGEKYEEPIVTAWRPPGHIRRQSQEDYEIQRKRLGIS 178
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKL-KAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGS 191
+G+ IPPPI +F +M+FP+ +L+ + K KGIV PT IQ+QG+PV LSGRDMIGIA TGS
Sbjct: 179 CEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGS 238
Query: 192 GKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
GKT+ FVL + EGPF LI+ PSRELARQ ++++ + + AG
Sbjct: 239 GKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGL 298
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
P++R LCIGGV + Q + V+ G+HIVVATPGRL DML KK +NL+ CRYL LDEADR+
Sbjct: 299 PEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRM 358
Query: 312 VDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI 371
+D+GFED+I+ +F FKAQRQTLLFSATMP KIQ FA+SALVKP+ VNVGRAGAA+L+V+
Sbjct: 359 LDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVL 418
Query: 372 QEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQE 431
QE+E+V+ E K+V +LECLQKT P VLIF E K DVD+I+EYLL+KGVE ++HGGKDQ
Sbjct: 419 QELEFVRSENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQS 478
Query: 432 EREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT 491
+R I +F+ +KDVLVATDVASKGLDF I+HVIN+DMP +IENYVHRIGRTGR G+
Sbjct: 479 DRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRK 538
Query: 492 GIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL-NDPMEDVDAITNASGVKGCAYC 550
G+ATTFINK + L DLK LL EA Q +P L L D A TNA KGCAYC
Sbjct: 539 GLATTFINKKSEMSVLSDLKQLLAEAGQELPEFLKMLAGDEEGTAPAGTNAE--KGCAYC 596
Query: 551 GGLGHRIRDCPKLE---HQKSMAIASSRRDYFGSGGY 584
GLGHRI DCPKL ++ + A+A D GG+
Sbjct: 597 SGLGHRITDCPKLAGIGNKTTQALARGGGD---DGGF 630
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 171/425 (40%), Positives = 256/425 (60%)
Query: 114 IRRMSKKACDLIRKQWHI-IVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
I ++S K IR + I I++GE++P P+ + + FP+ ++K LK IV PTPIQ+Q
Sbjct: 83 ISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQ 142
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSG+DMIG A TGSGKTL F+L G+GP L++ P+RELA
Sbjct: 143 GWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKY---GDGPIVLVLAPTRELA 199
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
Q + +F T + +R GGV Q+ +K+GVHI++A PGRL D+L +
Sbjct: 200 EQIRQECIKFSTESK------IRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQ 253
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
NL YL LDEAD+++D+GFE IR++ D + RQTL++SAT P ++Q A+
Sbjct: 254 NVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEVQALAKDLC 313
Query: 353 VK-PVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADV 407
+ P+ VNVG A + QE+ +++ KI L LQ K +++F E K +
Sbjct: 314 KEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNA 373
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
D I + L L G+ A+ +HG K QEER + ++ FK GK +++ATDVAS+GLD ++++VI
Sbjct: 374 DFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVI 433
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
N+D P +IE+YVHRIGRTGR G G + TF+ ++ DL +L+E++Q +PP L +
Sbjct: 434 NFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAK-DLVKILRESEQPVPPQLEK 492
Query: 528 LNDPM 532
++ M
Sbjct: 493 ISYSM 497
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 171/425 (40%), Positives = 256/425 (60%)
Query: 114 IRRMSKKACDLIRKQWHI-IVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
I ++S K IR + I I++GE++P P+ + + FP+ ++K LK IV PTPIQ+Q
Sbjct: 83 ISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQ 142
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSG+DMIG A TGSGKTL F+L G+GP L++ P+RELA
Sbjct: 143 GWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKY---GDGPIVLVLAPTRELA 199
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
Q + +F T + +R GGV Q+ +K+GVHI++A PGRL D+L +
Sbjct: 200 EQIRQECIKFSTESK------IRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQ 253
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
NL YL LDEAD+++D+GFE IR++ D + RQTL++SAT P ++Q A+
Sbjct: 254 NVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEVQALAKDLC 313
Query: 353 VK-PVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADV 407
+ P+ VNVG A + QE+ +++ KI L LQ K +++F E K +
Sbjct: 314 KEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNA 373
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
D I + L L G+ A+ +HG K QEER + ++ FK GK +++ATDVAS+GLD ++++VI
Sbjct: 374 DFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVI 433
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
N+D P +IE+YVHRIGRTGR G G + TF+ ++ DL +L+E++Q +PP L +
Sbjct: 434 NFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAK-DLVKILRESEQPVPPQLEK 492
Query: 528 LNDPM 532
++ M
Sbjct: 493 ISYSM 497
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 172/413 (41%), Positives = 239/413 (57%)
Query: 118 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVV 177
S + + RK+ + V G DIP PI F + FP+ +L+++K +G +PTPIQ QG P+
Sbjct: 102 SDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMA 161
Query: 178 LSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYE 237
LSGRDMIGIA TGSGKTL + L G+GP L++ P+RELA Q
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQY---GDGPIVLVLAPTRELAVQIQT 218
Query: 238 VVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297
+F R +R GG Q+ + RGV I +ATPGRL DML K NL
Sbjct: 219 ECSKFGKSSR------IRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNL 272
Query: 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVT 357
YL LDEADR++D+GFE IR++ D + RQTL++SAT P ++Q R L P+
Sbjct: 273 KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQ 332
Query: 358 VNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHE 412
V +G AA+ + Q VE + K++ + +L L + +L+F K D+I
Sbjct: 333 VTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTKRTCDEITT 392
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 472
YL G A+A+HG K+Q ER++ + F+ GK ++VATDVA++G+D I HVINYDMP
Sbjct: 393 YLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMP 452
Query: 473 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
IE+YVHRIGRTGR G +G A +F + S+ DL +++EA Q +PP L
Sbjct: 453 GNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGG-DLCKIMREANQTVPPEL 504
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 170/416 (40%), Positives = 243/416 (58%)
Query: 118 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVV 177
S++ D RK+ + V G D+P P++ F + FP+ +L ++KA+G +PT IQ QG P+
Sbjct: 115 SQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMA 174
Query: 178 LSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYE 237
LSGRD++GIA TGSGKTL + L PG+GP LI+ P+RELA Q
Sbjct: 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLA---PGDGPIVLILAPTRELAVQIQA 231
Query: 238 VVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297
+ +F R +R GGV Q+ + RGV + +ATPGRL DML + NL
Sbjct: 232 EISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNL 285
Query: 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVT 357
YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L +
Sbjct: 286 RRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQ 345
Query: 358 VNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHE 412
VN+G +AN + Q VE + K++ I +L + ++ L+F K D+I
Sbjct: 346 VNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITR 405
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 472
+L G A+++HG K Q+ER++ ++ FK GK ++VATDVAS+G+D DI HVINYD P
Sbjct: 406 FLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYP 465
Query: 473 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
E+YVHRIGRTGR G G A TF + ++ DL +L EAKQ+I P LAE+
Sbjct: 466 NNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQAR-DLVTILSEAKQQIDPRLAEM 520
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 175/417 (41%), Positives = 239/417 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+R S RK+ + + G DIP PI F + FP+ +L ++KA+G +PT IQ QG
Sbjct: 84 VRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQG 143
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
P+ LSGRDM+GIA TGSGKTL + L PG+GP L++ P+RELA
Sbjct: 144 WPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLA---PGDGPIVLVLAPTRELAV 200
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +F R +R GGV Q+ + RG IV+ATPGRL DML
Sbjct: 201 QIQTECSKFGHSSR------IRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIG 254
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLN 314
Query: 354 KPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIFCENKADVD 408
P+ V VG + + N+ I EV ++ K++ YL Q LIF K D
Sbjct: 315 DPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCD 374
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
DI +YL G A+A+HG KDQ ER++ + F+ G+ ++VATDVA++G+D I +VIN
Sbjct: 375 DITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVIN 434
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
YDMP IE+YVHRIGRTGR G TG A +F + Q++ L +++EA Q IPP L
Sbjct: 435 YDMPGNIEDYVHRIGRTGRAGATGTAISFFTE-QNKGLGAKLISIMREANQNIPPEL 490
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 164/419 (39%), Positives = 249/419 (59%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ M+ + RK I V+G+DIP P+K+F+D+ FP+ +L+++K G +PTPIQ QG
Sbjct: 70 VAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQG 129
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
P+ + GRD+IGIA TGSGKTL ++L G+GP L++ P+RELA
Sbjct: 130 WPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH---GDGPIVLVLAPTRELAV 186
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q + +F + + ++T GGV Q+ +++GV IV+ATPGRL DM+
Sbjct: 187 QIQQEASKFGSSSK------IKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESN 240
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
NL YL LDEADR++D+GF+ IR++ H + RQTL +SAT P +++ ++ L
Sbjct: 241 NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY 300
Query: 354 KPVTVNVGRAGA-ANLDVIQEVEYVKQEAK---IVYLLECLQKTPPPVLIFCENKADVDD 409
P V +G + AN + Q V+ + + K +V LLE + +L+F + K D
Sbjct: 301 NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSR-ILVFLDTKKGCDQ 359
Query: 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
I L + G A+++HG K Q ER++ +S F++GK ++ ATDVA++GLD D+++VINY
Sbjct: 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINY 419
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
D P +E+YVHRIGRTGR G G A TF + +L ++LQEA Q++ P LA +
Sbjct: 420 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK-ELTNILQEAGQKVSPELASM 477
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 171/422 (40%), Positives = 240/422 (56%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ S+ D R++ + V G D+P P++ F + FP ++ ++KA+G PT IQ QG
Sbjct: 96 VTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQG 155
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
P+ LSGRD++GIA TGSGKTL + L PG+GP LI+ P+RELA
Sbjct: 156 WPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLA---PGDGPIVLILAPTRELAV 212
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q + +F R +R GGV Q+ + RGV + +ATPGRL DML
Sbjct: 213 QIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESG 266
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ + RQTL++SAT P +++N A L
Sbjct: 267 KTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQ 326
Query: 354 KPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK------TPPPVLIFCENKAD 406
+ VN+G +AN + Q VE V + K ++ ++K + +LIF K
Sbjct: 327 DFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRV 386
Query: 407 VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466
D+I +L G A+++HG K Q ER++ + FK GK ++VATDVAS+G+D +I HV
Sbjct: 387 ADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHV 446
Query: 467 INYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526
+NYD P E+Y+HRIGRTGR G G A TF S+ DL +LQEAKQ I P LA
Sbjct: 447 LNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQAR-DLLGVLQEAKQEIDPRLA 505
Query: 527 EL 528
E+
Sbjct: 506 EM 507
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 755 (270.8 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 167/439 (38%), Positives = 252/439 (57%)
Query: 131 IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTG 190
I + G+ +P P F++ FP+ ++ +++ +G +PT IQ QG P+ +SGRD++G+A TG
Sbjct: 145 ITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTG 204
Query: 191 SGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAG 250
SGKTL +VL G+GP L++ P+RELA+Q +V +F
Sbjct: 205 SGKTLAYVLPAVVHINNQPRLER---GDGPIALVLAPTRELAQQIQQVAIEF------GS 255
Query: 251 YPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310
+R GG Q ++RGV IV+ATPGRL D L + +L C YL LDEADR
Sbjct: 256 NTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADR 315
Query: 311 LVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLD 369
++D+GFE IR++ + RQ L++SAT P +++ A L + VN+G +AN +
Sbjct: 316 MLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHN 375
Query: 370 VIQEVEYVKQEAKIVYLLECLQ----KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVH 425
++Q V+ + K++ L++ L + +IF E K VD+I + +G A A+H
Sbjct: 376 ILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIH 435
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G K Q+ER++ +SSF+ G+ +LVATDVA++GLD D++ VINYD P+ E+YVHRIGRT
Sbjct: 436 GDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRT 495
Query: 486 GRCGKTGIA-TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGV 544
GR TG A T F + N ++ DL +L+EA Q I P L +N M G
Sbjct: 496 GRSNNTGTAYTLFTHSNANKAN--DLIQVLREANQTINPKL--MNMAMNG--GYNKRGGG 549
Query: 545 KGCAYCGGLGHRIRDCPKL 563
G Y GG G++ R+ P++
Sbjct: 550 MGGGYRGGNGYQGRN-PQM 567
Score = 38 (18.4 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 580 GSGGYRGE 587
G GGYRG+
Sbjct: 616 GQGGYRGQ 623
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 747 (268.0 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 162/417 (38%), Positives = 242/417 (58%)
Query: 125 IRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184
IR++ I V G ++P P+ +F++ P +++++K +G +PT IQ QG P+ LSGRD++
Sbjct: 219 IRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLV 278
Query: 185 GIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244
GIA TGSGKTL ++L + GEGP L++ P+RELA+Q VV
Sbjct: 279 GIAQTGSGKTLAYMLPAIVHIGNQPPI---IRGEGPIALVLAPTRELAQQIQSVV----- 330
Query: 245 PMRDAGY---PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301
RD G+ P++R GG Q + RGV +++ATPGRL D L + NL C
Sbjct: 331 --RDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCT 388
Query: 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361
YL LDEADR++D+GFE IR++ + + RQ +++SAT P ++Q A L + +N+G
Sbjct: 389 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIG 448
Query: 362 RAG-AANLDVIQEVEYVKQEAKIVYLLECLQKTPP---------PVLIFCENKADVDDIH 411
+AN ++ Q VE + K L+ L + P +++F E K V+DI
Sbjct: 449 SMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDIL 508
Query: 412 EYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471
+ + +G A ++HG K Q ER+ + F+ GK ++L+ATDVAS+GLD D+Q+VINYD
Sbjct: 509 QIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDY 568
Query: 472 PAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
P ENYVHRIGRTGRC + G A TF + ++ +L +L+EA Q L +L
Sbjct: 569 PNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQAR-ELISVLEEAGQTPSQALLDL 624
Score = 40 (19.1 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 568 SMAIASSRRDYFGSGGYRG 586
S A+ R SGGYRG
Sbjct: 618 SQALLDLARSMPSSGGYRG 636
Score = 38 (18.4 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 548 AYCGGLGHRIRDCPKLEHQK 567
A GG+ R + PK E+Q+
Sbjct: 791 AGAGGMPPRFQQYPKREYQQ 810
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 427 (155.4 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 90/202 (44%), Positives = 125/202 (61%)
Query: 331 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 390
RQT++F+ATMP ++ ARS L +P V +G AG + V Q+V + + K LL L
Sbjct: 599 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL 658
Query: 391 QKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 449
++ PP++IF K D + + L G A +HGGK QE+RE+A+S+ KAG KD+LV
Sbjct: 659 EQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILV 718
Query: 450 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 509
ATDVA +G+D D+ V+NYDM IE+Y+HRIGRTGR GK+G+A TF+ K S +
Sbjct: 719 ATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS-AVFYE 777
Query: 510 LKH-LLQEAKQRIPPVLAELND 530
LK +L+ PP LA D
Sbjct: 778 LKQAILESPVSSCPPELANHPD 799
Score = 375 (137.1 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 88/281 (31%), Positives = 144/281 (51%)
Query: 53 VKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPL 112
+ Q KR+Q ++++ + + E + L +R+ + D W
Sbjct: 306 IDLKQQKREQSRFYG--DLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDD---RHWSQK- 359
Query: 113 PIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ M+ + + R+ + I G IP PI+++KD P IL+ + G +PTPIQ Q
Sbjct: 360 KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ 419
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSREL 231
+P+ L RD+IG+A TGSGKT F++ + GP+ +I+ P+REL
Sbjct: 420 AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL 479
Query: 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA 291
A+Q E +F P+ +RT+ IGG+ Q ++ G IV+ATPGRL D+L
Sbjct: 480 AQQIEEETIKFGKPL------GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLE 533
Query: 292 KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 332
+ + L C Y+ LDEADR++D+GFE D++++ +H Q
Sbjct: 534 NRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 574
Score = 75 (31.5 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 29 KGQASTLEDELEKSKL---AEVKPSLLVKASQ----LKRDQPEISPTEQIVQQEKEMIEN 81
K Q +LE+ L K K AE KP L KA + LKR Q E+ ++++++E++ +
Sbjct: 137 KIQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQKMLEEERKKRKQ 196
Query: 82 LSD--RKTLMSVRE 93
D RK L +E
Sbjct: 197 FQDLGRKMLEDPQE 210
Score = 49 (22.3 bits), Expect = 7.8e-42, Sum P(2) = 7.8e-42
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 5 EDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPE 64
ED ++Y P+ K R + Q +L R G + ++ + +K + + L+ K L+ + E
Sbjct: 279 EDTSIDYNPLYKERH-QVQ-LLGR-GFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQE 335
Query: 65 ISPTEQIVQQEKEMIENLSDR----KTLMSVRELAKGITYTDPLLT--GWKPPLPIR 115
+ ++ ++KE + DR K L + + I D +T G K P PIR
Sbjct: 336 EARLRKL--RKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIR 390
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 427 (155.4 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 90/202 (44%), Positives = 125/202 (61%)
Query: 331 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 390
RQT++F+ATMP ++ ARS L +P V +G AG + V Q+V + + K LL L
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL 659
Query: 391 QKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 449
++ PP++IF K D + + L G A +HGGK QE+RE+A+S+ KAG KD+LV
Sbjct: 660 EQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILV 719
Query: 450 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 509
ATDVA +G+D D+ V+NYDM IE+Y+HRIGRTGR GK+G+A TF+ K S +
Sbjct: 720 ATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS-AVFYE 778
Query: 510 LKH-LLQEAKQRIPPVLAELND 530
LK +L+ PP LA D
Sbjct: 779 LKQAILESPVSSCPPELANHPD 800
Score = 375 (137.1 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 88/281 (31%), Positives = 144/281 (51%)
Query: 53 VKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPL 112
+ Q KR+Q ++++ + + E + L +R+ + D W
Sbjct: 307 IDLKQQKREQSRFYG--DLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDD---RHWSQK- 360
Query: 113 PIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ M+ + + R+ + I G IP PI+++KD P IL+ + G +PTPIQ Q
Sbjct: 361 KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ 420
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSREL 231
+P+ L RD+IG+A TGSGKT F++ + GP+ +I+ P+REL
Sbjct: 421 AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA 291
A+Q E +F P+ +RT+ IGG+ Q ++ G IV+ATPGRL D+L
Sbjct: 481 AQQIEEETIKFGKPL------GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLE 534
Query: 292 KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 332
+ + L C Y+ LDEADR++D+GFE D++++ +H Q
Sbjct: 535 NRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 79 (32.9 bits), Expect = 5.6e-45, Sum P(2) = 5.6e-45
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 29 KGQASTLEDELEKSKL---AEVKPSLLVKASQ----LKRDQPEISPTEQIVQQEKEMIEN 81
K Q +LE+ L K K AE KP L KA + LKR Q E+ ++++++E++ +
Sbjct: 138 KAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197
Query: 82 LSD--RKTLMSVRE 93
D RK L +E
Sbjct: 198 FQDLGRKMLEDPQE 211
Score = 49 (22.3 bits), Expect = 7.9e-42, Sum P(2) = 7.9e-42
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 5 EDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPE 64
ED ++Y P+ K R + Q +L R G + ++ + +K + + L+ K L+ + E
Sbjct: 280 EDTSIDYNPLYKERH-QVQ-LLGR-GFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQE 336
Query: 65 ISPTEQIVQQEKEMIENLSDR----KTLMSVRELAKGITYTDPLLT--GWKPPLPIR 115
+ ++ ++KE + DR K L + + I D +T G K P PIR
Sbjct: 337 EARLRKL--RKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIR 391
Score = 37 (18.1 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 281 ATPGRLKDMLAKKK 294
A P L+++LAKKK
Sbjct: 139 AQPLSLEELLAKKK 152
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 427 (155.4 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 90/202 (44%), Positives = 125/202 (61%)
Query: 331 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 390
RQT++F+ATMP ++ ARS L +P V +G AG + V Q+V + + K LL L
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL 659
Query: 391 QKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 449
++ PP++IF K D + + L G A +HGGK QE+RE+A+S+ KAG KD+LV
Sbjct: 660 EQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILV 719
Query: 450 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 509
ATDVA +G+D D+ V+NYDM IE+Y+HRIGRTGR GK+G+A TF+ K S +
Sbjct: 720 ATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS-AVFYE 778
Query: 510 LKH-LLQEAKQRIPPVLAELND 530
LK +L+ PP LA D
Sbjct: 779 LKQAILESPVSSCPPELANHPD 800
Score = 375 (137.1 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 88/281 (31%), Positives = 144/281 (51%)
Query: 53 VKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPL 112
+ Q KR+Q ++++ + + E + L +R+ + D W
Sbjct: 307 IDLKQQKREQSRFYG--DLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDD---RHWSQK- 360
Query: 113 PIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ M+ + + R+ + I G IP PI+++KD P IL+ + G +PTPIQ Q
Sbjct: 361 KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ 420
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSREL 231
+P+ L RD+IG+A TGSGKT F++ + GP+ +I+ P+REL
Sbjct: 421 AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA 291
A+Q E +F P+ +RT+ IGG+ Q ++ G IV+ATPGRL D+L
Sbjct: 481 AQQIEEETIKFGKPL------GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLE 534
Query: 292 KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 332
+ + L C Y+ LDEADR++D+GFE D++++ +H Q
Sbjct: 535 NRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 79 (32.9 bits), Expect = 5.6e-45, Sum P(2) = 5.6e-45
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 29 KGQASTLEDELEKSKL---AEVKPSLLVKASQ----LKRDQPEISPTEQIVQQEKEMIEN 81
K Q +LE+ L K K AE KP L KA + LKR Q E+ ++++++E++ +
Sbjct: 138 KAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197
Query: 82 LSD--RKTLMSVRE 93
D RK L +E
Sbjct: 198 FQDLGRKMLEDPQE 211
Score = 49 (22.3 bits), Expect = 7.9e-42, Sum P(2) = 7.9e-42
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 5 EDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPE 64
ED ++Y P+ K R + Q +L R G + ++ + +K + + L+ K L+ + E
Sbjct: 280 EDTSIDYNPLYKERH-QVQ-LLGR-GFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQE 336
Query: 65 ISPTEQIVQQEKEMIENLSDR----KTLMSVRELAKGITYTDPLLT--GWKPPLPIR 115
+ ++ ++KE + DR K L + + I D +T G K P PIR
Sbjct: 337 EARLRKL--RKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIR 391
Score = 37 (18.1 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 281 ATPGRLKDMLAKKK 294
A P L+++LAKKK
Sbjct: 139 AQPLSLEELLAKKK 152
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 427 (155.4 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 90/202 (44%), Positives = 125/202 (61%)
Query: 331 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 390
RQT++F+ATMP ++ ARS L +P V +G AG + V Q+V + + K LL L
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL 659
Query: 391 QKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 449
++ PP++IF K D + + L G A +HGGK QE+RE+A+S+ KAG KD+LV
Sbjct: 660 EQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILV 719
Query: 450 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 509
ATDVA +G+D D+ V+NYDM IE+Y+HRIGRTGR GK+G+A TF+ K S +
Sbjct: 720 ATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS-AVFYE 778
Query: 510 LKH-LLQEAKQRIPPVLAELND 530
LK +L+ PP LA D
Sbjct: 779 LKQAILESPVSSCPPELANHPD 800
Score = 375 (137.1 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
Identities = 88/281 (31%), Positives = 144/281 (51%)
Query: 53 VKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPL 112
+ Q KR+Q ++++ + + E + L +R+ + D W
Sbjct: 307 IDLKQQKREQSRFYG--DLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDD---RHWSQK- 360
Query: 113 PIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ M+ + + R+ + I G IP PI+++KD P IL+ + G +PTPIQ Q
Sbjct: 361 KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ 420
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSREL 231
+P+ L RD+IG+A TGSGKT F++ + GP+ +I+ P+REL
Sbjct: 421 AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA 291
A+Q E +F P+ +RT+ IGG+ Q ++ G IV+ATPGRL D+L
Sbjct: 481 AQQIEEETIKFGKPL------GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLE 534
Query: 292 KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 332
+ + L C Y+ LDEADR++D+GFE D++++ +H Q
Sbjct: 535 NRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 79 (32.9 bits), Expect = 5.6e-45, Sum P(2) = 5.6e-45
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 29 KGQASTLEDELEKSKL---AEVKPSLLVKASQ----LKRDQPEISPTEQIVQQEKEMIEN 81
K Q +LE+ L K K AE KP L KA + LKR Q E+ ++++++E++ +
Sbjct: 138 KAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197
Query: 82 LSD--RKTLMSVRE 93
D RK L +E
Sbjct: 198 FQDLGRKMLEDPQE 211
Score = 49 (22.3 bits), Expect = 7.9e-42, Sum P(2) = 7.9e-42
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 5 EDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPE 64
ED ++Y P+ K R + Q +L R G + ++ + +K + + L+ K L+ + E
Sbjct: 280 EDTSIDYNPLYKERH-QVQ-LLGR-GFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQE 336
Query: 65 ISPTEQIVQQEKEMIENLSDR----KTLMSVRELAKGITYTDPLLT--GWKPPLPIR 115
+ ++ ++KE + DR K L + + I D +T G K P PIR
Sbjct: 337 EARLRKL--RKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIR 391
Score = 37 (18.1 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 281 ATPGRLKDMLAKKK 294
A P L+++LAKKK
Sbjct: 139 AQPLSLEELLAKKK 152
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 169/418 (40%), Positives = 242/418 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
++ M+++ + R + I V+G D+P P+K F+D FP+ IL+ + G +PTPIQ QG
Sbjct: 136 VQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQG 195
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
P+ L GRD+IGIA TGSGKTL ++L +GP LI+ P+RELA
Sbjct: 196 WPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD---DGPIVLILAPTRELAV 252
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q E +F +R +R+ GG Q+ ++RGV IV+ATPGRL DML +
Sbjct: 253 QIQEESRKF--GLRSG----VRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQ 306
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
NL YL LDEADR++D+GFE IR++ + RQTLL+SAT P +++ AR L
Sbjct: 307 HTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLR 366
Query: 354 KPVTVNVGRAGA-ANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENKADVDDI 410
P +G AN + Q +E V K LL L++ +LIF E K D +
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQV 426
Query: 411 HEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470
L + G A+A+HG K Q ER+ ++ FK+G+ ++ ATDVA++GLD DI+ V+NYD
Sbjct: 427 TRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYD 486
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
P +E+Y+HRIGRTGR G G+A TF + ++ +L +LQEA Q +PP L+ L
Sbjct: 487 FPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAR-ELVKILQEAGQVVPPTLSAL 543
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 174/420 (41%), Positives = 236/420 (56%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+R S RK+ I+V G ++P P+ F++ FP +LK++K G PTPIQ Q
Sbjct: 93 VRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
P+ +SGRDM+GI+ TGSGKTL + L PG+GP L++ P+RELA
Sbjct: 153 WPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLS---PGDGPIVLVLAPTRELAV 209
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q + +F R +R GGV Q+ + RGV I +ATPGRL DML
Sbjct: 210 QIQQECTKFGKSSR------IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSN 263
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQT++FSAT P ++Q AR L
Sbjct: 264 KTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLN 323
Query: 354 KPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYL----LECLQKTPPPVLIFCENKADVD 408
+ V VG AA+ ++ Q VE V K L E L+ VLIF K D
Sbjct: 324 DYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVAD 383
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
DI +L G A+A+HG K Q+ER++ ++ F+ GK ++VATDVAS+G+D I HV N
Sbjct: 384 DITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFN 443
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+YVHRIGRTGR G G A T+ + ++ +L +L EAKQ I P L E+
Sbjct: 444 YDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAR-ELVSILSEAKQDIDPKLEEM 502
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 166/420 (39%), Positives = 244/420 (58%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R S + + R+ I V G D P PI F + FP+ ++ + + PTPIQ QG
Sbjct: 67 VARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQG 126
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG+DM+GIA TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 127 WPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEH---GDGPICLVLAPTRELAQ 183
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R +++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 184 QVQQVAAEYGKASR------IKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAG 237
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 238 KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 297
Query: 354 KPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ + +NVG +AN +++Q V+ ++E K++ LLE + + +IF E K D
Sbjct: 298 EYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD 357
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
D+ + G A+ +HG K+Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 358 DLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVIN 417
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
+D P E+Y+HRIGRT R KTG A TF N + DL +L+EA Q I P L ++
Sbjct: 418 FDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAH-DLVSVLREANQAINPKLIQM 476
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 165/423 (39%), Positives = 248/423 (58%)
Query: 111 PLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQ 170
P +RR +++ + R + V G + P PI NF + FP +++ ++ + +PT IQ
Sbjct: 51 PDVVRRTAQEV-EQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQ 109
Query: 171 VQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRE 230
QG PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RE
Sbjct: 110 AQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRE 166
Query: 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDML 290
LA+Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 167 LAQQVQQVAAEYSRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 220
Query: 291 AKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARS 350
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A
Sbjct: 221 EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 280
Query: 351 ALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKA 405
L + V +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K
Sbjct: 281 FLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKR 340
Query: 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 465
DD+ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++
Sbjct: 341 RCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 400
Query: 466 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
VINYD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L
Sbjct: 401 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VNDLISVLREANQAINPKL 459
Query: 526 AEL 528
+L
Sbjct: 460 LQL 462
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 165/423 (39%), Positives = 248/423 (58%)
Query: 111 PLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQ 170
P +RR +++ + R + V G + P PI NF + FP +++ ++ + +PT IQ
Sbjct: 59 PDVVRRTAQEV-EQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQ 117
Query: 171 VQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRE 230
QG PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RE
Sbjct: 118 AQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRE 174
Query: 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDML 290
LA+Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 175 LAQQVQQVAAEYSRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 228
Query: 291 AKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARS 350
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A
Sbjct: 229 EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 288
Query: 351 ALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKA 405
L + V +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K
Sbjct: 289 FLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKR 348
Query: 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 465
DD+ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++
Sbjct: 349 RCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 408
Query: 466 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
VINYD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L
Sbjct: 409 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VNDLISVLREANQAINPKL 467
Query: 526 AEL 528
+L
Sbjct: 468 LQL 470
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 741 (265.9 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 160/420 (38%), Positives = 242/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + + R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
Score = 37 (18.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 55 EKNFYQEHPDLARRTAQEVETYRRSK 80
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 741 (265.9 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 160/420 (38%), Positives = 242/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + + R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 122 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 181
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 182 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 238
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 239 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 292
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 293 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 352
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 353 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 412
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 413 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 472
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 473 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 531
Score = 37 (18.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 112 EKNFYQEHPDLARRTAQEVETYRRSK 137
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 741 (265.9 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 160/420 (38%), Positives = 242/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + + R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
Score = 37 (18.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 55 EKNFYQEHPDLARRTAQEVETYRRSK 80
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 741 (265.9 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 160/420 (38%), Positives = 242/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + + R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
Score = 37 (18.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 55 EKNFYQEHPDLARRTAQEVETYRRSK 80
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 741 (265.9 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 160/420 (38%), Positives = 242/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + + R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
Score = 37 (18.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 55 EKNFYQEHPDLARRTAQEVETYRRSK 80
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 739 (265.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 164/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 121
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 122 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 178
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 179 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 232
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 233 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 292
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 293 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 352
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 353 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 412
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 413 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 471
Query: 528 LND 530
L D
Sbjct: 472 LVD 474
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 52 EKNFYVEHPEVARLTPYEVDELRRKK 77
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 739 (265.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 164/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 121
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 122 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 178
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 179 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 232
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 233 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 292
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 293 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 352
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 353 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 412
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 413 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 471
Query: 528 LND 530
L D
Sbjct: 472 LVD 474
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 52 EKNFYVEHPEVARLTPYEVDELRRKK 77
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 739 (265.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 164/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 143 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 202
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 203 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 259
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 260 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 313
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 314 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 373
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 374 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 433
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 434 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 493
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 494 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 552
Query: 528 LND 530
L D
Sbjct: 553 LVD 555
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 133 EKNFYVEHPEVARLTPYEVDELRRKK 158
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 739 (265.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 164/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 141 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 200
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 201 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 257
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 258 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 311
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 312 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 371
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 372 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 431
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 432 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 491
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 492 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 550
Query: 528 LND 530
L D
Sbjct: 551 LVD 553
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 131 EKNFYVEHPEVARLTPYEVDELRRKK 156
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 739 (265.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 164/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 141 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 200
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 201 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 257
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 258 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 311
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 312 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 371
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 372 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 431
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 432 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 491
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 492 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 550
Query: 528 LND 530
L D
Sbjct: 551 LVD 553
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 131 EKNFYVEHPEVARLTPYEVDELRRKK 156
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 739 (265.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 164/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 143 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 202
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 203 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 259
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 260 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 313
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 314 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 373
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 374 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 433
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 434 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 493
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 494 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 552
Query: 528 LND 530
L D
Sbjct: 553 LVD 555
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 133 EKNFYVEHPEVARLTPYEVDELRRKK 158
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 739 (265.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 164/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 121
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 122 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 178
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 179 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 232
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 233 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 292
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 293 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 352
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 353 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 412
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 413 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 471
Query: 528 LND 530
L D
Sbjct: 472 LVD 474
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 52 EKNFYVEHPEVARLTPYEVDELRRKK 77
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 737 (264.5 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 163/423 (38%), Positives = 242/423 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDG-EDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ + +R++ I + G E P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 60 VARLTPYEVEELRRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQ 119
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 120 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 176
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 177 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA 230
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 231 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 290
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
V +NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 291 QDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 350
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 467
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VI
Sbjct: 351 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVI 410
Query: 468 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
NYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L +
Sbjct: 411 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLMQ 469
Query: 528 LND 530
L D
Sbjct: 470 LVD 472
Score = 39 (18.8 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E +++ ++K
Sbjct: 50 EKNFYVEHPEVARLTPYEVEELRRKK 75
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 737 (264.5 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 160/420 (38%), Positives = 241/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + + R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER + ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
Score = 37 (18.1 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 55 EKNFYQEHPDLARRTAQEVETYRRSK 80
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 734 (263.4 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 159/420 (37%), Positives = 241/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + + R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
Score = 37 (18.1 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 55 EKNFYQEHPDLARRTAQEVETYRRSK 80
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 722 (259.2 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 158/411 (38%), Positives = 240/411 (58%)
Query: 126 RKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIG 185
R++ I V G+ +P PI++F ++ P+ ++K+++ +G PT IQ QG P+ +SG + +G
Sbjct: 265 REEQEITVRGQ-VPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVG 323
Query: 186 IAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTP 245
IA TGSGKTL ++L G+GP L++ P+RELA+Q ++Q T
Sbjct: 324 IAKTGSGKTLGYILPAIVHINNQQPLQR---GDGPIALVLAPTRELAQQ----IQQVATE 376
Query: 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTL 305
+ Y +R GG Q+ ++RG IV+ATPGRL D L+ NL C YL L
Sbjct: 377 FGSSSY--VRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVL 434
Query: 306 DEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG- 364
DEADR++D+GFE IR++ + RQTL++SAT P +++ A L + +N+G
Sbjct: 435 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLEL 494
Query: 365 AANLDVIQEV----EYVKQEAKIVYLLECLQKT---PPPVLIFCENKADVDDIHEYLLLK 417
+AN ++ Q V E+ K+E K+ LL + T P ++IF E K VD++ ++
Sbjct: 495 SANHNIRQVVDVCDEFSKEE-KLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSF 553
Query: 418 GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 477
GV A+HG K Q ER++ + F++GK ++LVATDVA++GLD I++VIN+D P E+
Sbjct: 554 GVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSED 613
Query: 478 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
Y+HRIGRTGR G + F KN ++ L +L+EA Q I P L L
Sbjct: 614 YIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA-LVDVLREANQEINPALENL 663
Score = 46 (21.3 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELE 40
+ DDYV+ +P A++R +K L T E ++E
Sbjct: 107 DSDDYVDSIPKAEQRT-RTRKSLFNDPDERTEEIKIE 142
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 728 (261.3 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 164/425 (38%), Positives = 242/425 (56%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 121
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA
Sbjct: 122 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 178
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 179 QQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES 232
Query: 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL 352
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 233 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 292
Query: 353 VKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADV 407
+NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 293 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRC 352
Query: 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP--DIQH 465
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GL F D++
Sbjct: 353 DDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKF 412
Query: 466 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
VINYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L
Sbjct: 413 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKL 471
Query: 526 AELND 530
+L D
Sbjct: 472 MQLVD 476
Score = 37 (18.1 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 52 EKNFYVEHPEVARLTPYEVDELRRKK 77
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 177/437 (40%), Positives = 242/437 (55%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
I M+++ R++ I V G D+ P+K F+D F I+ +K + +PT IQ Q
Sbjct: 199 ISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQA 258
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
LP+VLSGRD+IGIA TGSGKT FVL EGP +I P+RELA
Sbjct: 259 LPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRD---EGPIGVICAPTRELAH 315
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q + ++F Y LR GG+ Q + +K G IVVATPGRL DML K
Sbjct: 316 QIFLEAKKF-----SKAY-GLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMK 369
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
+ + YL LDEADR+ DLGFE +R + + RQTLLFSATMP K++ AR L
Sbjct: 370 ALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILS 429
Query: 354 KPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYLLECLQKT--PPPVLIFCENKADVDDI 410
P+ V VG G AN D+ Q V + +A K+ +LLE L VL+F KA VD+I
Sbjct: 430 DPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEI 489
Query: 411 HEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470
L L + A+HG KDQ R + FK+G VL+ATDVA++GLD ++ V+NYD
Sbjct: 490 EAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYD 549
Query: 471 MPAEIENYVHRIGRTGRCG-KTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
+ +++ +VHRIGRTGR G + G+A T + + ++ +L + L A Q +PP L +L
Sbjct: 550 IAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAG-ELVNSLVAAGQNVPPELTDL- 607
Query: 530 DPMEDVDAITNASGVKG 546
M+D + G KG
Sbjct: 608 -AMKDGRFKSKRDGRKG 623
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 161/420 (38%), Positives = 242/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + D R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 161/420 (38%), Positives = 242/420 (57%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ R + + D R+ I V G + P P+ NF + FP ++ + + +PT IQ QG
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
PV LSG DM+G+A TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 182 QVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 236 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 295
Query: 354 KPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
+ +N+G +AN +++Q V+ V+++ K++ L+E + + ++F E K D
Sbjct: 296 DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD 355
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q+ER++ ++ FK GK +L+ATDVAS+GLD D++ VIN
Sbjct: 356 ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+Y+HRIGRT R KTG A TF N + + DL +L+EA Q I P L +L
Sbjct: 416 YDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSDLISVLREANQAINPKLLQL 474
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 172/465 (36%), Positives = 257/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 232 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 292 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 406 GRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAYEHHYKG 582
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
++ K + GG G RD + S + +SSR SGG
Sbjct: 583 SSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSSSRASSSRSGG 625
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 150/386 (38%), Positives = 219/386 (56%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLL 320
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 321 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 380
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T
Sbjct: 381 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGK 440
Query: 396 P--VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT V
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 500
Query: 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513
A++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL L
Sbjct: 501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK-DLLDL 559
Query: 514 LQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS 573
L EAKQ +P L N E ++ K + GG G RD + S + +S
Sbjct: 560 LVEAKQEVPSWLE--NMAYEHHYKGSSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSS 615
Query: 574 SRRDY-------------FGSGGYRG 586
SR FG GGY G
Sbjct: 616 SRASSSRSGGGGHGSSRGFGGGGYGG 641
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 159/419 (37%), Positives = 235/419 (56%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ + +++ + R + + V G ++PPPI F FP ++K++ G PTPIQ Q
Sbjct: 355 VSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQA 414
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
P+ L GRD+IG+A TGSGKTL F+L +GP L++ P+RELA
Sbjct: 415 WPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLRED---DGPIVLVLAPTRELAL 471
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q E +F G + GG +Q+ +K+GV IV+ATPGRL D+L
Sbjct: 472 QIQEETNKF------GGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESG 525
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL YL LDEADR++D+GFE IR++ + RQTL+FSAT P ++Q A L
Sbjct: 526 KTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLT 585
Query: 354 KPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENKADVDDI 410
+ V++G AN +V Q VE + K +L L V++F E + VDD+
Sbjct: 586 DHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDDL 645
Query: 411 HEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470
L G +++ +HG K Q ER++ +S FK G +++ATDVAS+GLD DI++V+NYD
Sbjct: 646 QRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYD 705
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
P IE Y+HRIGRT R G +G++ + + + + +L +L EAKQ+IP L+ L+
Sbjct: 706 FPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN-ELIKVLTEAKQKIPIELSNLS 763
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 172/465 (36%), Positives = 257/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 232 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 292 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 406 GRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAYEHHYKG 582
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
++ K + GG G RD + S + +SSR SGG
Sbjct: 583 SSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSSSRAGSSRSGG 625
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 150/386 (38%), Positives = 219/386 (56%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLL 320
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 321 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 380
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T
Sbjct: 381 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGK 440
Query: 396 P--VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT V
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 500
Query: 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513
A++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL L
Sbjct: 501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK-DLLDL 559
Query: 514 LQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS 573
L EAKQ +P L N E ++ K + GG G RD + S + +S
Sbjct: 560 LVEAKQEVPSWLE--NMAYEHHYKGSSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSS 615
Query: 574 SRRDY-------------FGSGGYRG 586
SR FG GGY G
Sbjct: 616 SRAGSSRSGGGGHGSSRGFGGGGYGG 641
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 172/465 (36%), Positives = 257/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 171 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 230
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 231 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 290
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 291 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 344
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 345 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 404
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 405 GRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 464
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 465 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAYEHHYKG 581
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
++ K + GG G RD + S + +SSR SGG
Sbjct: 582 SSRGRSKSSRFSGGFG--ARDYRQSSGGSSSSFSSSRASSSRSGG 624
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 723 (259.6 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 174/524 (33%), Positives = 282/524 (53%)
Query: 62 QPEISPTEQIVQQEKEMIENLSDRKT-LMSVRELAKGITYTDPLLTGWKPPLP-IRRMSK 119
+P+ + + ++E ++ + K +S+ + +K I Y +P + + I RM++
Sbjct: 448 EPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSK-IEY-EPFRKNFYIEVKDISRMTQ 505
Query: 120 KACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLS 179
+ + RK+ + V G+D+P PIK + IL +K +P PIQ Q LP+++S
Sbjct: 506 EEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMS 565
Query: 180 GRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVV 239
GRD IG+A TGSGKTL FVL G+GP L++ P+REL +Q + +
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA---GDGPIGLVMAPTRELVQQIHSDI 622
Query: 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299
+F P+ G +R + GG + Q+ +KRG IVV TPGR+ D+L + N
Sbjct: 623 RKFSKPL---G---IRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITN 676
Query: 300 CR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356
R +L +DEADR+ D+GFE I + + + +RQT+LFSAT P +++ AR L KPV
Sbjct: 677 LRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPV 736
Query: 357 TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYL 414
+ VG N D+ Q VE + + + LLE L + +L+F +++ D ++ +
Sbjct: 737 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDM 796
Query: 415 LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474
+ +++HGGKDQ +RE IS FK ++L+AT VA++GLD +++ V+N+D P
Sbjct: 797 IKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNH 856
Query: 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMED 534
E+YVHR+GRTGR G+ G A TFI+++ ++ DL L+ ++Q +P L L D
Sbjct: 857 YEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAP-DLVKALELSEQPVPDDLKALADGFM- 914
Query: 535 VDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDY 578
V G Y GG G + + + E + A + ++Y
Sbjct: 915 VKVKQGIEQAHGTGY-GGSGFKFNE--EEEEVRKAAKKAQAKEY 955
Score = 52 (23.4 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQA-STLEDELEKSKLAEVKPSLLVKASQLKRD 61
+E+ E V +RR E Q++ ++K +A S + + + ++ K L S +
Sbjct: 270 DEQKKLDEEVEKRRRRVQEWQELKRKKEEAESESKGDADGNEPKAGKAWTLEGESDDEEG 329
Query: 62 QPEI-SPTEQIVQQEKEMIENLSDRKTLMSVRELAKGIT 99
PE S TE V +E + EN D K + E A ++
Sbjct: 330 HPEEKSETEMDVDEETKP-ENDGDAKMVDLENETAATVS 367
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 170/465 (36%), Positives = 258/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 232 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 292 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 406 GRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ + T DL LL EAKQ +P L + +
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNANITK-DLLDLLVEAKQEVPSWLENM---AYEHHYK 581
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
++ G + GG G RD + S + +SSR SGG
Sbjct: 582 GSSRGRSKSRFSGGFG--ARDYRQSSGASSSSFSSSRASSSRSGG 624
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 148/386 (38%), Positives = 220/386 (56%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLL 320
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 321 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 380
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T
Sbjct: 381 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGK 440
Query: 396 P--VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT V
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 500
Query: 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513
A++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ + T DL L
Sbjct: 501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITK-DLLDL 559
Query: 514 LQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS 573
L EAKQ +P L + + ++ G + GG G RD + S + +S
Sbjct: 560 LVEAKQEVPSWLENM---AYEHHYKGSSRGRSKSRFSGGFG--ARDYRQSSGASSSSFSS 614
Query: 574 SRRDY-------------FGSGGYRG 586
SR FG GGY G
Sbjct: 615 SRASSSRSGGGGHGSSRGFGGGGYGG 640
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 413 (150.4 bits), Expect = 2.2e-73, Sum P(3) = 2.2e-73
Identities = 93/217 (42%), Positives = 127/217 (58%)
Query: 317 EDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY 376
E + E F K RQT++F+ATMP ++ AR+ L +P TV +G G Q V
Sbjct: 588 ETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYM 647
Query: 377 VKQEAKIVYLLECL-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREY 435
+ + K L+E L +K PPV+IF K D + + L G + +HGGK QE+REY
Sbjct: 648 MGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREY 707
Query: 436 AISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495
A+++ K+G KD+LVATDVA +G+D D+ VINYDM IE+Y HRIGRTGR GKTG A
Sbjct: 708 ALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAI 767
Query: 496 TFINKNQSETTLLDLKHLLQEAK-QRIPPVLAELNDP 531
+F+ K+ S DLK + + PP L +N P
Sbjct: 768 SFVTKDDS-ALFYDLKQCVSASPVSTCPPEL--MNHP 801
Score = 368 (134.6 bits), Expect = 2.2e-73, Sum P(3) = 2.2e-73
Identities = 74/211 (35%), Positives = 127/211 (60%)
Query: 117 MSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV 176
M+++ + R+ +++ + G IP PI+++ + FP+ I+ + G +PTPIQ Q +P+
Sbjct: 368 MTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPI 427
Query: 177 VLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVP-GEGPFCLIVCPSRELARQT 235
L RD+IG+A TGSGKTL F++ +GP+ +I+ P+RELA+Q
Sbjct: 428 GLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQI 487
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
E +F P+ +RT++ +GG+ Q ++ G IV+ATPGRL D+L + +
Sbjct: 488 EEETTKFGQPL------GIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 541
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDH 326
L+ C Y+ LDEADR++D+GFE D++++ ++
Sbjct: 542 VLNQCTYIVLDEADRMIDMGFEPDVQKILEY 572
Score = 48 (22.0 bits), Expect = 2.2e-73, Sum P(3) = 2.2e-73
Identities = 26/95 (27%), Positives = 37/95 (38%)
Query: 29 KGQASTLEDELEKSKLAEV---KPSLLVKASQ----LKRDQPEISPTEQIVQQEKEMIEN 81
K + +LE+ L+K K E KP L K + +KR Q E+ +E +
Sbjct: 125 KKEPLSLEELLDKKKREEEARSKPVFLTKEQRALEAIKRRQEEVERQRAAHDAAREQMAA 184
Query: 82 LSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRR 116
S M +A G P + PP P RR
Sbjct: 185 ASKVSISMGTA-MASGAP--PPAIVA-PPPKPDRR 215
Score = 41 (19.5 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 29/119 (24%), Positives = 48/119 (40%)
Query: 27 QRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRK 86
Q++ Q+ D LEK + K V+ ++KR + + + EKE +D
Sbjct: 315 QKRTQSKFYGDLLEKRRTEAEKEQEKVRLKKMKRKEDK-QKWDDRHWSEKE-----NDEM 368
Query: 87 TLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVD--GEDIPPPIK 143
T R + T + G + P PIR ++ K+ I+D G P PI+
Sbjct: 369 TERDWRIFREDYNVT---IKGGRIPNPIRSWNESG---FPKEIIDIIDKVGYKEPTPIQ 421
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 164/414 (39%), Positives = 245/414 (59%)
Query: 130 HIIVD--GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIA 187
+I VD G+D+P PI +F E +++ +K +PTP+Q +P+V GRD++ A
Sbjct: 139 NIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACA 198
Query: 188 FTGSGKT--LVFVLXXXXXXXXXX----XXXXXVPGEG-PFCLIVCPSRELARQTYEVVE 240
TGSGKT +F L +G P L++ P+RELA Q +E
Sbjct: 199 QTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEAR 258
Query: 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300
+F R +R + GG + +Q+ V RG ++VATPGRL D+L + K++L N
Sbjct: 259 KFT--YRSW----VRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANI 312
Query: 301 RYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPV 356
+YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ+ AR L +
Sbjct: 313 KYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYI 372
Query: 357 TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENKADVDDIHEYLL 415
++VGR G+ + ++ Q + YV K LL+ L + LIF E K D + ++L+
Sbjct: 373 FLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLI 432
Query: 416 LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEI 475
++ +A A+HG + Q ERE A+S+FKA D+LVAT VA++GLD P++ HVINYD+P++I
Sbjct: 433 MQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDI 492
Query: 476 ENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
++YVHRIGRTGR G TG+AT+F N N ++ + L +L EA Q +P L++L+
Sbjct: 493 DDYVHRIGRTGRAGNTGVATSFFNSN-NQNIVKGLMEILNEANQEVPTFLSDLS 545
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 172/467 (36%), Positives = 257/467 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 214 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 273
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 274 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 333
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 334 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 387
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 388 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 447
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP----VLIFCENKADVDDIHEYLLL 416
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L
Sbjct: 448 GRVGSTSENITQKVVWVEESDKRSFLLDLLNATESGKDSLTLVFVETKKGADSLEDFLYH 507
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
+G ++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE
Sbjct: 508 EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 567
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVD 536
YVHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 568 EYVHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAYEHHY 624
Query: 537 AITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
++ K + GG G RD + S + +SSR SGG
Sbjct: 625 KGSSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSSSRAGSSRSGG 669
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 150/388 (38%), Positives = 219/388 (56%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++
Sbjct: 309 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLL 362
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 363 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 422
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T
Sbjct: 423 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATES 482
Query: 396 P----VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT 451
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT
Sbjct: 483 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 542
Query: 452 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLK 511
VA++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL
Sbjct: 543 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK-DLL 601
Query: 512 HLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAI 571
LL EAKQ +P L N E ++ K + GG G RD + S +
Sbjct: 602 DLLVEAKQEVPSWLE--NMAYEHHYKGSSRGRSKSSRFSGGFG--ARDYRQSSGASSSSF 657
Query: 572 ASSRRDY-------------FGSGGYRG 586
+SSR FG GGY G
Sbjct: 658 SSSRAGSSRSGGGGHGSSRGFGGGGYGG 685
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 162/422 (38%), Positives = 240/422 (56%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ MS+ + R++ I V G P P+ NF +FP+ ++ L + +PT IQ QG
Sbjct: 66 VHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQG 125
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
P+ LSGRDM+GIA TGSGKTL ++L G+GP CL++ P+RELA+
Sbjct: 126 FPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQ 182
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q +V + R +++ GG Q+ ++RGV I +ATPGRL D L
Sbjct: 183 QVQQVAFDYGKSSR------IKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVG 236
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 237 KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQ 296
Query: 354 KPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKADVD 408
V +N+G +AN +++Q V+ +++ K++ L+E + + +IF E K D
Sbjct: 297 DYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCD 356
Query: 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468
++ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ VIN
Sbjct: 357 ELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVIN 416
Query: 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YD P E+YVHRIGRT R G A TF DL +L+EA+Q I P L +L
Sbjct: 417 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQAR-DLVRVLEEARQAINPKLLQL 475
Query: 529 ND 530
D
Sbjct: 476 VD 477
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 171/465 (36%), Positives = 257/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 232 AAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG ++ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 292 RSR------VRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 406 GRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAFEHHYKG 582
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
++ K + GG G RD + S + +SSR SGG
Sbjct: 583 SSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSSSRASSSRSGG 625
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 149/386 (38%), Positives = 219/386 (56%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG ++ Q+ ++RG H++
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGAEIGQQIRDLERGCHLL 320
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 321 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 380
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T
Sbjct: 381 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGK 440
Query: 396 P--VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT V
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 500
Query: 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513
A++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL L
Sbjct: 501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK-DLLDL 559
Query: 514 LQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS 573
L EAKQ +P L N E ++ K + GG G RD + S + +S
Sbjct: 560 LVEAKQEVPSWLE--NMAFEHHYKGSSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSS 615
Query: 574 SRRDY-------------FGSGGYRG 586
SR FG GGY G
Sbjct: 616 SRASSSRSGGGGHGGSRGFGGGGYGG 641
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 171/465 (36%), Positives = 257/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 232 AAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG ++ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 292 RSR------VRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 406 GRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAFEHHYKG 582
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
++ K + GG G RD + S + +SSR SGG
Sbjct: 583 SSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSSSRASSSRSGG 625
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 149/386 (38%), Positives = 219/386 (56%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG ++ Q+ ++RG H++
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGAEIGQQIRDLERGCHLL 320
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 321 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 380
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T
Sbjct: 381 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGK 440
Query: 396 P--VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT V
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 500
Query: 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513
A++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL L
Sbjct: 501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK-DLLDL 559
Query: 514 LQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS 573
L EAKQ +P L N E ++ K + GG G RD + S + +S
Sbjct: 560 LVEAKQEVPSWLE--NMAFEHHYKGSSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSS 615
Query: 574 SRRDY-------------FGSGGYRG 586
SR FG GGY G
Sbjct: 616 SRASSSRSGGGGHGSSRGFGGGGYGG 641
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 171/465 (36%), Positives = 256/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 171 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 230
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 231 AAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 290
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 291 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 344
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 345 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 404
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T +L+F E K D + ++L +G
Sbjct: 405 GRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEG 464
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 465 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAFEH-HYK 580
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
+ G + GG G RD + S + +S R SGG
Sbjct: 581 GGSRGRSKSRFSGGFG--ARDYRQSSGASSSSFSSGRASNSRSGG 623
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 171/465 (36%), Positives = 256/465 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 170 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 229
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 230 AAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 289
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 290 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 343
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 344 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 403
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T +L+F E K D + ++L +G
Sbjct: 404 GRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEG 463
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 464 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 523
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 524 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAFEH-HYK 579
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
+ G + GG G RD + S + +S R SGG
Sbjct: 580 GGSRGRSKSRFSGGFG--ARDYRQSSGASSSSFSSGRASNSRSGG 622
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 716 (257.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 191/512 (37%), Positives = 267/512 (52%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDY-PPFEKNFYNEHEEIT 225
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 226 NLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V LSGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQ-EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD--VLVATDVASKGLDFPDIQHVINYD 470
L +G +HG DQ ER IS FK KKD VLVATDVA++GLD P I+ VINYD
Sbjct: 517 NLKQEGHNLGLLHGDMDQSERNKVISDFK--KKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
+ +I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDL-- 631
Query: 531 PMEDV----DAITNASGVKGCAYCGGLGHRIR 558
M++ G K GGLG+R R
Sbjct: 632 AMQNAWFRKSRFKGGKGKKLNIGGGGLGYRER 663
Score = 38 (18.4 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 15/67 (22%), Positives = 22/67 (32%)
Query: 521 IPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFG 580
+P A+ D + A G+ G G + P Q AS G
Sbjct: 740 VPTNSAQQGHNSPDSPVTSAAKGIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSREG 799
Query: 581 SGGYRGE 587
+GG G+
Sbjct: 800 TGGSNGK 806
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 716 (257.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 159/431 (36%), Positives = 236/431 (54%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ M+++ + R+ ++I G IP P++++++ + +LK ++ G +P+PIQ+
Sbjct: 284 LEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAA 343
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
+P+ L RD+IGIA TGSGKT FVL EGP+ +++ P+RELA+
Sbjct: 344 IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQ 403
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q E +F A Y R +GG + Q + +G IV+ATPGRL D L ++
Sbjct: 404 QIEEETVKF------AHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERR 457
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDI-----------------REVFDHFKAQRQTLLF 336
L+ C Y+ LDEADR++D+GFE + E D K R T +F
Sbjct: 458 YAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMF 517
Query: 337 SATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT-PP 395
SATMP ++ AR L PV V +G AG + Q V +K+ K L + L +
Sbjct: 518 SATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEK 577
Query: 396 PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455
++F K + D I + L G +HGGK QE+RE ++ F+A + +VLVATDV
Sbjct: 578 TAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVG 637
Query: 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515
+G+D PD+ HVINYDMP IE Y HRIGRTGR GK+G+AT+F+ + +E DLK +L
Sbjct: 638 RGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV-FYDLKQMLV 696
Query: 516 EAKQRIPPVLA 526
++ +PP LA
Sbjct: 697 QSNSAVPPELA 707
Score = 38 (18.4 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 69 EQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKK 120
E++ +EK +E L +R+ +EL + L G KP + R S+K
Sbjct: 138 EEVKAREKARVEKLVERE---KEKELD---AIKEQYLGGKKPKKRVIRPSEK 183
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 173/468 (36%), Positives = 253/468 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I+NF D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 167 GSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKT 226
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L V G P L++ P+RELA Q YE +F
Sbjct: 227 AAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 286
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 287 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 340
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 341 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 400
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V+ K +LL+ L T L+F E K D + ++L +G
Sbjct: 401 GRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEG 460
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 461 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEY 520
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L +
Sbjct: 521 VHRIGRTGRVGNLGLATSFFNEKNMNITK-DLLDLLVEAKQEVPSWLENMAYEHHYKGGS 579
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSR--RDYFGSGGY 584
S K + GG G RD + S +SR G GGY
Sbjct: 580 RGRS--KSNRFSGGFG--ARDYRQSSGSSSSGFGASRGSSSRSGGGGY 623
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 149/386 (38%), Positives = 215/386 (55%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++
Sbjct: 262 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLL 315
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 316 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 375
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V+ K +LL+ L T
Sbjct: 376 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGS 435
Query: 396 P--VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT V
Sbjct: 436 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 495
Query: 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513
A++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL L
Sbjct: 496 AARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITK-DLLDL 554
Query: 514 LQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS 573
L EAKQ +P L + S K + GG G RD + S +
Sbjct: 555 LVEAKQEVPSWLENMAYEHHYKGGSRGRS--KSNRFSGGFG--ARDYRQSSGSSSSGFGA 610
Query: 574 SRRD--------Y-----FGSGGYRG 586
SR Y FG GGY G
Sbjct: 611 SRGSSSRSGGGGYGNSRGFGGGGYGG 636
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 173/468 (36%), Positives = 253/468 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I+NF D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 170 GSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKT 229
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L V G P L++ P+RELA Q YE +F
Sbjct: 230 AAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 289
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 290 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 343
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 344 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 403
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V+ K +LL+ L T L+F E K D + ++L +G
Sbjct: 404 GRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEG 463
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 464 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEY 523
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L +
Sbjct: 524 VHRIGRTGRVGNLGLATSFFNEKNMNITK-DLLDLLVEAKQEVPSWLENMAYEHHYKGGS 582
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSR--RDYFGSGGY 584
S K + GG G RD + S +SR G GGY
Sbjct: 583 RGRS--KSNRFSGGFG--ARDYRQSSGSSSSGFGASRGSSSRSGGGGY 626
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 149/386 (38%), Positives = 215/386 (55%)
Query: 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIV 279
P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++
Sbjct: 265 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLL 318
Query: 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLL 335
VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++
Sbjct: 319 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 378
Query: 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPP 395
FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V+ K +LL+ L T
Sbjct: 379 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGS 438
Query: 396 P--VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453
L+F E K D + ++L +G ++HG + Q +RE A+ F++GK +LVAT V
Sbjct: 439 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 498
Query: 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513
A++GLD +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL L
Sbjct: 499 AARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITK-DLLDL 557
Query: 514 LQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS 573
L EAKQ +P L + S K + GG G RD + S +
Sbjct: 558 LVEAKQEVPSWLENMAYEHHYKGGSRGRS--KSNRFSGGFG--ARDYRQSSGSSSSGFGA 613
Query: 574 SRRD--------Y-----FGSGGYRG 586
SR Y FG GGY G
Sbjct: 614 SRGSSSRSGGGGYGNSRGFGGGGYGG 639
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 174/469 (37%), Positives = 257/469 (54%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSG
Sbjct: 170 VTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSG 229
Query: 193 KTLVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQF 242
KT F+L V G P L++ P+RELA Q YE +F
Sbjct: 230 KTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKF 289
Query: 243 LTPMRDAGYPDLRTLLCI--GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300
Y R L C+ GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C
Sbjct: 290 -------SYRS-RVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFC 341
Query: 301 RYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPV 356
+YL LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + +
Sbjct: 342 KYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
Query: 357 TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYL 414
+ VGR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L
Sbjct: 402 FLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFL 461
Query: 415 LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474
+G ++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P +
Sbjct: 462 YHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGD 521
Query: 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMED 534
IE YVHRIGRTGR G G+AT+F N+ + DL LL EAKQ +P L N E
Sbjct: 522 IEEYVHRIGRTGRVGNLGLATSFFNERNINISK-DLLDLLVEAKQEVPSWLE--NMAYEH 578
Query: 535 VDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
+N + + GG G RD + S + +S R SGG
Sbjct: 579 HYKSSNRG--RSRRFSGGFG--ARDYRQSSSSGSFSYSSGRAGSSRSGG 623
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 400 (145.9 bits), Expect = 2.6e-72, Sum P(3) = 2.6e-72
Identities = 89/226 (39%), Positives = 127/226 (56%)
Query: 317 EDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY 376
E+ + + F + RQT++F+ATM + I+ AR L +P V++G AG V Q V
Sbjct: 495 EEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYM 554
Query: 377 VKQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREY 435
V ++ K L+E L+ PP++IF K D + + L G + +HGGK Q++REY
Sbjct: 555 VPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREY 614
Query: 436 AISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495
A+ + K G D+LVATDVA +G+D D+ V+NYDM IE+Y HRIGRTGR GK G A
Sbjct: 615 ALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAI 674
Query: 496 TFINKNQSETTLLDLKHLLQEAK-QRIPPVLAELNDPMEDVDAITN 540
TF+ + + DLK +L E+ PP LA D T+
Sbjct: 675 TFLTPDDT-AVYFDLKQVLVESPVSSCPPELANHPDAQSKPGVFTS 719
Score = 366 (133.9 bits), Expect = 2.6e-72, Sum P(3) = 2.6e-72
Identities = 81/259 (31%), Positives = 145/259 (55%)
Query: 69 EQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQ 128
+++++ + + E + L + K + + D W+ + MS + + R+
Sbjct: 231 QEMMENRRTVDEKEQEMHRLEKELKKEKKVAHDD---RHWRMK-ELSEMSDRDWRIFRED 286
Query: 129 WHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAF 188
++I + G +P P++N+++ FP+ + + +K G ++PTPIQ Q +P+ L RD+IG+A
Sbjct: 287 FNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAE 346
Query: 189 TGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSRELARQTYEVVEQFLTPMR 247
TGSGKT F+L + GP+ +I+ P+RELA+Q E +F +
Sbjct: 347 TGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLL- 405
Query: 248 DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307
G ++T+ IGG Q ++ GV +V+ATPGRL D+L + + L+ C Y+ LDE
Sbjct: 406 --G---IKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDE 460
Query: 308 ADRLVDLGFEDDIREVFDH 326
ADR++D+GFE D+++V ++
Sbjct: 461 ADRMLDMGFEPDVQKVLEY 479
Score = 59 (25.8 bits), Expect = 2.6e-72, Sum P(3) = 2.6e-72
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 34 TLEDELEKSKLAE---VKPSLLVKASQ----LKRDQPEISPTEQIVQQEKEMIEN 81
+LE+ LEK K E KP L KA + LKR + E++ + +Q +E +N
Sbjct: 7 SLEELLEKKKREEDELAKPKFLSKAERAALALKRREEEVAKLRETQKQAEEARKN 61
Score = 40 (19.1 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 279 VVATPGRLKDMLAKKKMNLDN-CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 332
+ A P L+++L KKK D + L +A+R L + EV + Q+Q
Sbjct: 1 MAAEPPSLEELLEKKKREEDELAKPKFLSKAERAA-LALKRREEEVAKLRETQKQ 54
Score = 37 (18.1 bits), Expect = 5.3e-70, Sum P(3) = 5.3e-70
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 44 LAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAK 96
+A PSL + KR++ E++ + + + E+ + + + +RE K
Sbjct: 1 MAAEPPSLEELLEKKKREEDELAKPKFLSKAERAALALKRREEEVAKLRETQK 53
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 171/470 (36%), Positives = 255/470 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 150 GSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 209
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 210 AAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAY 269
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 270 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 323
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 324 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 383
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 384 GRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEG 443
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 444 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 503
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L +
Sbjct: 504 VHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLENMAYEQHHKGGG 562
Query: 539 TNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSR--RDYFGSGGYRG 586
+ K + GG G RD S + +SSR G G RG
Sbjct: 563 SRGRS-KSSRFTGGFG--ARDYRTSSGAGSSSFSSSRPASGRTGGSGSRG 609
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 190/540 (35%), Positives = 285/540 (52%)
Query: 21 EAQKILQRKGQASTLEDELEK--SKLAE-VKPSLLVKASQLKRD--QPEISPTEQIVQQE 75
E + +L + AS EDE++ + +A V + ++ L + P + E++V E
Sbjct: 284 EDRGMLGNEQAASMEEDEVDPLDAYMASLVGTTDTIRPGLLNTEVIDPNANDDERMVISE 343
Query: 76 K-EMIENL-------SDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRK 127
E ENL S +K +++V + +K I Y D + P ++ +S D +R
Sbjct: 344 TLEEEENLLALAAKRSKKKDVITV-DHSK-INYEDFKKDFYVEPEELKNLSPAEVDELRA 401
Query: 128 QWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGI 186
I + G D P P+ ++ + + + G +PT IQ Q +P + SGRD+IG+
Sbjct: 402 SLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGV 461
Query: 187 AFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246
A TGSGKT+ F+L GEGP +I+ P+RELA Q + + FL +
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKT---GEGPIAIIMTPTRELAVQIFRECKPFLKLL 518
Query: 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDML---AKKKMNLDNCRYL 303
++R GG ++ Q+ +KRG IVV TPGR+ D+L A + NL C YL
Sbjct: 519 ------NIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYL 572
Query: 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA 363
LDEADR+ DLGFE + + ++ + RQT+LFSAT P ++ AR L KPV + VG
Sbjct: 573 VLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGR 632
Query: 364 GAANLDVIQEVEYVKQEAKIVYLLECL-----QKTPPPVLIFCENKADVDDIHEYLLLKG 418
+V Q VE +E+K LLE L + L+F + + D + L+ +G
Sbjct: 633 SVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRG 692
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
+ ++HGGKDQ +R+ IS +KAG DVL+AT V ++GLD +Q V+NYD P +E+Y
Sbjct: 693 YTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDY 752
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP-MEDVDA 537
VHR+GRTGR G TG+A TFI Q E +D+ L+ +KQ +P L L +E V A
Sbjct: 753 VHRVGRTGRAGHTGVAVTFITPEQ-EKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKA 811
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 174/471 (36%), Positives = 256/471 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 148 GSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 207
Query: 195 LVFVLXXXXXXXX-----XXXXXXXVPGE-G-----PFCLIVCPSRELARQTYEVVEQFL 243
F+L G G P L++ P+RELA Q YE +F
Sbjct: 208 AAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFA 267
Query: 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 268 YRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 321
Query: 304 TLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVN 359
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + +
Sbjct: 322 VLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 381
Query: 360 VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLK 417
VGR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +
Sbjct: 382 VGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHE 441
Query: 418 GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 477
G ++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE
Sbjct: 442 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 501
Query: 478 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDA 537
YVHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E
Sbjct: 502 YVHRIGRTGRVGNLGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLE--NMAYEQHHK 558
Query: 538 ITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSR--RDYFGSGGYRG 586
+ G + GG G RD S + +SSR G G RG
Sbjct: 559 GGGSRGRSKSRFTGGFG--ARDYRTSSGAGSSSFSSSRPASGRTGGSGSRG 607
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 162/412 (39%), Positives = 235/412 (57%)
Query: 125 IRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184
IRK I + G D+ P+ +F F + +L+ + + I PTPIQ Q +P+ LSGRD+I
Sbjct: 287 IRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLI 346
Query: 185 GIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244
IA TGSGKT F+ G+GP L + P+RELA Q Y L
Sbjct: 347 AIAKTGSGKTATFIWPSISHIMDQPYLEK---GDGPIALFLAPTRELAHQIY------LE 397
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
++ + Y L+T + GGV + Q + +K G I+VATPGRL DM+ K L+ YL
Sbjct: 398 TLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLV 457
Query: 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364
LDEAD++ D GF + + +H + RQTLLFSAT ++ FAR+ L P+ +++G G
Sbjct: 458 LDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIG 517
Query: 365 AANLDVIQEVEYVKQEA-KIVYLLE--CLQKTPPPVLIFCENKADVDDIHEYLLLKGVEA 421
+AN D+ Q V+ +K ++ K +L L + VLIF K V+ + L G +
Sbjct: 518 SANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQT 577
Query: 422 VAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHR 481
+HG K+Q ER I +FK GK ++L+ATDVA++GLD P I++V+NYD +IE++ HR
Sbjct: 578 CTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHR 637
Query: 482 IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE--LNDP 531
IGRTGR G TG+A T I ++ DL L+ A Q +PP L + +N+P
Sbjct: 638 IGRTGRAGNTGVAYTLITPKDIHFSV-DLIKNLESASQFVPPELIDVAMNNP 688
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 194/521 (37%), Positives = 271/521 (52%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIDY-PPFEKNFYNEHEEIT 225
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 226 NLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V LSGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEY 413
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANN 516
Query: 414 LLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD--VLVATDVASKGLDFPDIQHVINYDM 471
L +G +HG DQ ER IS FK KKD VLVATDVA++GLD P I+ VINYD+
Sbjct: 517 LKQEGHNLGLLHGDMDQSERNKVISDFK--KKDIPVLVATDVAARGLDIPSIKTVINYDV 574
Query: 472 PAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531
+I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L
Sbjct: 575 ARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDL--A 631
Query: 532 MEDV----DAITNASGVKGCAYCGGLGHRIRDCPKLEHQKS 568
M++ G K GGLG+R R P L + S
Sbjct: 632 MQNAWFRKSRFKGGKGKKLNIGGGGLGYRER--PGLGSENS 670
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 172/477 (36%), Positives = 257/477 (53%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I+NF D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 171 GNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 230
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 231 AAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 290
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 291 RSR------VRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 344
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 345 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 404
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + +L +
Sbjct: 405 GRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQER 464
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q++RE A+ F++G+K +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 465 YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L + +
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNLNITK-DLLDLLVEAKQEVPSWLESM---AYEHHYK 580
Query: 539 TNASGVKGCAYCGGLGHR-IRDCPKLEH--------QKSMAIASSRRDYFGSGGYRG 586
++ G + GG G R R + S + SS FG GGY G
Sbjct: 581 GSSRGRSKSRFSGGFGARDYRQSSGSANAGFNSNRANSSRSSGSSHNRGFGGGGYGG 637
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 173/464 (37%), Positives = 260/464 (56%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G+D+P PI F +L+ +K +PTP+Q +P+V +GRD++ A TGSGKT
Sbjct: 134 GKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKT 193
Query: 195 LVFVLXXXXXXXXXXXXXXXVPGEGPF--------CLIVCPSRELARQTYEVVEQFLTPM 246
F L +G F +I+ P+RELA Q ++ ++F
Sbjct: 194 GGF-LFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFT--Y 250
Query: 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306
R ++ + GG + +QL ++RG ++VATPGRL D+L + K++L N +YL LD
Sbjct: 251 RSW----VKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLD 306
Query: 307 EADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362
EADR++D+GFE IR + + +RQTL+FSAT P IQ+ AR L + ++VGR
Sbjct: 307 EADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGR 366
Query: 363 AGAANLDVIQEVEYVKQEAKIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEA 421
G+ + ++ Q+V YV+ + K LL+ L T LIF E K D + ++L+++ A
Sbjct: 367 VGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRA 426
Query: 422 VAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHR 481
A+HG + Q ERE A+++F++G +LVAT VA++GLD P++ HVINYD+P+++++YVHR
Sbjct: 427 TAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHR 486
Query: 482 IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNA 541
IGRTGR G TG+AT F N S + L +L EA Q +P L DA+ +A
Sbjct: 487 IGRTGRAGNTGLATAFFNSENSNI-VKGLHEILTEANQEVPSFLK---------DAMMSA 536
Query: 542 SGVKGCAYCGGLG-HRIRDCPKLEHQKSMAIASSR-RDYFGSGG 583
G + + GG G + RD K + SSR RD GG
Sbjct: 537 PGSRSNSRRGGFGRNNNRDYRKAGGASAGGWGSSRSRDNSFRGG 580
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 713 (256.0 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 165/411 (40%), Positives = 234/411 (56%)
Query: 123 DLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRD 182
++ RKQ + GE+IP P F+ P IL++L + G PTPIQ Q P+ L RD
Sbjct: 415 EIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRD 474
Query: 183 MIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQF 242
++ IA TGSGKTL +++ GP LI+ P+RELA Q + +F
Sbjct: 475 IVAIAKTGSGKTLGYLIPAFILLRHCRNDSR----NGPTVLILAPTRELATQIQDEALRF 530
Query: 243 LTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301
G + C+ GG QL+ ++RG IVVATPGRL D+L K ++
Sbjct: 531 -------GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVS 583
Query: 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361
L LDEADR++D+GFE IR++ + +RQTL+++AT P +++ A LV PV VN+G
Sbjct: 584 LLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIG 643
Query: 362 RAG--AANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENKADVDDIHEYLLLK 417
R AAN + Q VE V Q K L + L Q+ V+IFC K D + + +
Sbjct: 644 RVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVG-R 702
Query: 418 GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 477
AV +HG K Q ER++ ++ F++GK VL+ATDVA++GLD DI+ VINYD P +E+
Sbjct: 703 HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVED 762
Query: 478 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YVHRIGRTGR G TG+A TF + Q DL +L+ A Q++PP + ++
Sbjct: 763 YVHRIGRTGRAGATGVAFTFFTE-QDWKYAPDLIKVLEGANQQVPPQVRDI 812
Score = 39 (18.8 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 575 RRDYFGSGGYRG 586
R D FG GG RG
Sbjct: 888 RDDSFGRGGNRG 899
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 165/466 (35%), Positives = 252/466 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G D+PPP+ F D+ + + ++ V+PTP+Q +P++L+ RD++ A TGSGKT
Sbjct: 143 GGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKT 202
Query: 195 LVFVLXXXXXXXXXXXXXXXVPGEG--PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYP 252
F PF +I+ P+RELA Q ++ ++F G
Sbjct: 203 AAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF---SYQTG-- 257
Query: 253 DLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312
++ ++ GG + QL ++RG I+VATPGRL D+L + ++++ R+L LDEADR++
Sbjct: 258 -VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRML 316
Query: 313 DLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL 368
D+GFE IR++ + + RQT+LFSAT P++IQ A + + + VGR G++
Sbjct: 317 DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTD 376
Query: 369 DVIQEVEYVKQEAKIVYLLECL------QKTPPPVLIFCENKADVDDIHEYLLLKGVEAV 422
+ Q VE+V++ K +L++ L Q L+F E K D + +L + A
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT 436
Query: 423 AVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI 482
++HG + Q+ERE A+ SFK G+ +LVATDVA++GLD P + HV+N+D+P +I++YVHRI
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 483 GRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNAS 542
GRTGR GK+GIAT F N+N ++ L L+QEA Q +P L + AS
Sbjct: 497 GRTGRAGKSGIATAFFNENNAQLAR-SLAELMQEANQEVPEWLTRY---------ASRAS 546
Query: 543 GVKGCAYCGGL--GHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRG 586
G GG G R DY+G GGY G
Sbjct: 547 FGGGKKRSGGRFGGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGG 592
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 164/424 (38%), Positives = 236/424 (55%)
Query: 111 PLPIRR-MSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
PLP S+ + + ++ I V G +PPP+ +F+ FP +L+++ + G PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q P+ + GRD++ IA TGSGKTL +++ GP L++ P+R
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM----GPTILVLSPTR 240
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKD 288
ELA Q E +F G + C+ GG QL ++RG IVVATPGRL D
Sbjct: 241 ELATQIQEEAVKF-------GRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 289 MLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348
+L ++++L YL LDEADR++D+GFE IR++ +RQTL+++AT P ++ A
Sbjct: 294 ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIA 353
Query: 349 RSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENK 404
LV P VN+G AN + Q +E V K L + L+ P V+IFC K
Sbjct: 354 ADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTK 413
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + L + A A+HG K Q ER+ ++ F++G+ VLVATDVA++GLD DI+
Sbjct: 414 RMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIR 472
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NYD P +E+YVHRIGRTGR G TG A TF S+ DL +L+ A QR+PP
Sbjct: 473 AVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHAS-DLIKILEGANQRVPPQ 531
Query: 525 LAEL 528
+ E+
Sbjct: 532 IREM 535
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 168/471 (35%), Positives = 253/471 (53%)
Query: 131 IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTG 190
I G+++PPP+ F ++ E + ++ V+PTP+Q +P++ +GRD++ A TG
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 191 SGKTLVFV--LXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRD 248
SGKT F + V G P +I+ P+RELA Q ++ +F
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKF---SYQ 250
Query: 249 AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308
G ++ ++ GG + Q+ ++RGV I+VATPGRL D+L + +++L R+L LDEA
Sbjct: 251 TG---VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEA 307
Query: 309 DRLVDLGFEDDIREVFDHFKAQ----RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364
DR++D+GFE IR++ RQT+LFSAT P +IQ A L + + VGR G
Sbjct: 308 DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG 367
Query: 365 AANLDVIQEVEYVKQEAKIVYLLECL--------QKTPPPVLIFCENKADVDDIHEYLLL 416
++ ++Q VE+V K +L++ L Q L+F E K D + +L +
Sbjct: 368 SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCI 427
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
G A +HG + Q+ERE A+ SFK G+ +LVATDVA++GLD P + HV+N+D+P +I+
Sbjct: 428 NGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 487
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVD 536
+YVHRIGRTGR G +G+AT F N N + T L L+QEA Q +P L
Sbjct: 488 DYVHRIGRTGRAGNSGLATAFFNDNNT-TMAKPLAELMQEANQEVPDWLTRYASRASFGG 546
Query: 537 AITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG-YRG 586
SG + GG RD ++S + DY+G GG Y G
Sbjct: 547 GKNRRSGGR----FGG-----RDF----RRESFSRGGGGADYYGGGGGYGG 584
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 153/407 (37%), Positives = 236/407 (57%)
Query: 131 IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTG 190
I G+++PPP+ F ++ E + ++ V+PTP+Q +P++L GRD++ A TG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 191 SGKTLVFVLXXXXXXXXXXXXXXXVPGEG--PFCLIVCPSRELARQTYEVVEQFLTPMRD 248
SGKT F P +I+ P+RELA Q ++ ++F
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKF---SYQ 263
Query: 249 AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308
G ++ ++ GG + QL ++RGV I+VATPGRL D+L + ++++ R+L LDEA
Sbjct: 264 TG---VKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEA 320
Query: 309 DRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364
DR++D+GFE IR++ + + RQTLLFSAT P +IQ A L + + VGR G
Sbjct: 321 DRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG 380
Query: 365 AANLDVIQEVEYVKQEAKIVYLLECL--------QKTPPPVLIFCENKADVDDIHEYLLL 416
++ ++Q VE+V K +L++ L Q L+F E K D + +L +
Sbjct: 381 SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCI 440
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
G A ++HG + Q+ERE A+ +FK+G+ +LVATDVA++GLD P + HV+N+D+P +I+
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 500
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLL-DLKHLLQEAKQRIP 522
+YVHRIGRTGR GK+G+AT F N T+L L L+QEA Q +P
Sbjct: 501 DYVHRIGRTGRAGKSGLATAFFN--DGNTSLARPLAELMQEANQEVP 545
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 171/477 (35%), Positives = 255/477 (53%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + PP I+NF D+ E I+ ++ +PTP+Q +P++ RD++ A TGSG T
Sbjct: 165 GNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCT 224
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L + G P L++ P+RELA Q YE +F
Sbjct: 225 AAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 284
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 285 RSR------VRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 338
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 339 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 398
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + +L +
Sbjct: 399 GRVGSTSENITQKVVWVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQER 458
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q++RE A+ F++G+K +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 459 YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEY 518
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAI 538
VHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L + +
Sbjct: 519 VHRIGRTGRVGNLGLATSFFNERNLNITK-DLLDLLVEAKQEVPSWLESM---AYEHHYK 574
Query: 539 TNASGVKGCAYCGGLGHR-IRDCPKLEHQ--------KSMAIASSRRDYFGSGGYRG 586
N+ G + GG G R R + S S+ FG GGY G
Sbjct: 575 GNSRGRSKSRFSGGFGARDYRQSSGYANSGFNNNRANSSRTSGSTHNRGFGGGGYGG 631
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 194/522 (37%), Positives = 271/522 (51%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIDY-PPFEKNFYNEHEEIT 225
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 226 NLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V LSGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQ-EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAS 516
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD--VLVATDVASKGLDFPDIQHVINYD 470
L +G +HG DQ ER IS FK KKD VLVATDVA++GLD P I+ VINYD
Sbjct: 517 NLKQEGHNLGLLHGDMDQSERNKVISDFK--KKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
+ +I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDL-- 631
Query: 531 PMEDV----DAITNASGVKGCAYCGGLGHRIRDCPKLEHQKS 568
M++ G K GGLG+R R P L + S
Sbjct: 632 AMQNAWFRKSRFKGGKGKKLNIGGGGLGYRER--PGLGSENS 671
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 191/512 (37%), Positives = 267/512 (52%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIDY-PPFEKNFYNEHEEIT 225
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 226 NLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V LSGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQ-EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD--VLVATDVASKGLDFPDIQHVINYD 470
L +G +HG DQ ER IS FK KKD VLVATDVA++GLD P I+ VINYD
Sbjct: 517 NLKQEGHNLGLLHGDMDQSERNKVISDFK--KKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
+ +I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDL-- 631
Query: 531 PMEDV----DAITNASGVKGCAYCGGLGHRIR 558
M++ G K GGLG+R R
Sbjct: 632 AMQNAWFRKSRFKGGKGKKLNIGGGGLGYRER 663
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 191/512 (37%), Positives = 267/512 (52%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDY-PPFEKNFYNEHEEIT 225
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 226 NLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V LSGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HAEGKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQ-EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD--VLVATDVASKGLDFPDIQHVINYD 470
L +G +HG DQ ER IS FK KKD VLVATDVA++GLD P I+ VINYD
Sbjct: 517 NLKQEGHNLGLLHGDMDQSERNKVISDFK--KKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
+ +I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDL-- 631
Query: 531 PMEDV----DAITNASGVKGCAYCGGLGHRIR 558
M++ G K GGLG+R R
Sbjct: 632 AMQNAWFRKSRFKGGKGKKLNIGGGGLGYRER 663
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 160/409 (39%), Positives = 239/409 (58%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G+ +P PI +F E +++ ++ +PTP+Q +P+V +GRD++ A TGSGKT
Sbjct: 178 GDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKT 237
Query: 195 LVFVLXXXXXXXXXXXXXXXVP-GEGPFC--------LIVCPSRELARQTYEVVEQFLTP 245
F+ VP G F L++ P+REL Q YE ++F
Sbjct: 238 GGFLFPVLSESYMKGPAP--VPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKF--- 292
Query: 246 MRDAGYPD-LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
Y +R + GG D+ Q+ + RG ++VATPGRLKD+L + K++L N RYL
Sbjct: 293 ----SYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLV 348
Query: 305 LDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + RQTL+FSAT P IQ AR L V ++V
Sbjct: 349 LDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSV 408
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENKADVDDIHEYLLLKGV 419
GR G+ + ++ Q++ YV+ + K +L+ L + ++F E K D++ +YL +G
Sbjct: 409 GRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETKRMADNLADYLYDQGF 468
Query: 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 479
A A+HG + Q ERE A+++FK G +LVAT VA++GLD P++ HVINYD+P++I++YV
Sbjct: 469 PATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYV 528
Query: 480 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
HRIGRTGR G GIAT F N+N ++ + L LL EA Q +P L ++
Sbjct: 529 HRIGRTGRAGNVGIATAFFNRN-NKNVVKGLIELLSEANQEVPDFLTKI 576
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 193/542 (35%), Positives = 275/542 (50%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEY-PPFEKNFYDEHEEIT 225
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 226 SLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V +SGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HSECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVE-YVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 472
L + +HG DQ ER IS FK +LVATDVA++GLD P I+ VINYD+
Sbjct: 517 NLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVA 576
Query: 473 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL--ND 530
+I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L +
Sbjct: 577 RDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDLAMQN 635
Query: 531 PMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKS-----MAIASSRRDYFGSGGYR 585
P G K GGLG+R R P L + S ++ S+ Y S G
Sbjct: 636 PWFRKSRFKGGKGKKPNIGGGGLGYRER--PGLGSESSDRGNNNSVMSNYEAYKPSSGAM 693
Query: 586 GE 587
G+
Sbjct: 694 GD 695
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 170/468 (36%), Positives = 253/468 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + P I++F D+ E I+ ++ +PTP+Q +P++ RD++ A TGSGKT
Sbjct: 173 GNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 232
Query: 195 LVFVLXXXXXXXXXX--XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVEQFLT 244
F+L V G P L++ P+RELA Q YE +F
Sbjct: 233 AAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 292
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL
Sbjct: 293 RSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 346
Query: 305 LDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + V
Sbjct: 347 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 406
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKG 418
GR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L +G
Sbjct: 407 GRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 466
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
++HG + Q +RE A+ F++GK +LVAT VA++GLD +++HVIN+D+P++IE Y
Sbjct: 467 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 526
Query: 479 VHRIGRTGRCGKTGI---ATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDV 535
VHRIGRTGR G G+ AT+F N+ T DL LL EAKQ +P L +
Sbjct: 527 VHRIGRTGRVGNLGLIGLATSFFNERNINITK-DLLDLLVEAKQEVPSWLENMAYEHHYK 585
Query: 536 DAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583
+ S + GG G RD + S +SSR SGG
Sbjct: 586 GSSRGRSKSYN-RFSGGFG--ARDYRQSSSSGSSTFSSSRAGSSRSGG 630
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 177/469 (37%), Positives = 251/469 (53%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G DI P + F +L+ +K G QPTP+Q +P+V SGRD++ A TGSG
Sbjct: 160 VSGGDIEP-VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSG 218
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVP---GEG-------PFCLIVCPSRELARQTYEVVEQF 242
KT F+ V G G P LI+ P+REL Q +E +F
Sbjct: 219 KTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKF 278
Query: 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302
R +R GG D+R+Q+ + +G ++ ATPGRL D++ + +++L N ++
Sbjct: 279 C--YRSW----VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKF 332
Query: 303 LTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTV 358
L LDEADR++D+GFE IR + + +RQTL+FSAT P IQ AR L V +
Sbjct: 333 LVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFL 392
Query: 359 NVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLL 416
+VGR G+ + ++ Q+V +V+ K YLL+ L PP LIF E K D + +YLL
Sbjct: 393 SVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLN 452
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
A ++HG + Q ERE A+ F++G+ ++VAT VAS+GLD P++ HVINYD+P +I+
Sbjct: 453 SNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDID 512
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVD 536
+YVHRIGRTGR G TG A F N+N ++ +L LLQEA Q P L + E
Sbjct: 513 DYVHRIGRTGRAGNTGQAVAFFNRN-NKGIAKELIELLQEANQECPSFLIAM--ARESSF 569
Query: 537 AITNASG-VKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGY 584
G G GG + RD + + S SS Y G GG+
Sbjct: 570 GGNGRGGRYSGRGGRGGNAYGARDFRRPTNSSSGY--SSGPSYSGYGGF 616
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 170/473 (35%), Positives = 256/473 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + P I++F D+ E I+ + +PTP+Q +P++ + RD++ A TGSGKT
Sbjct: 215 GTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKT 274
Query: 195 LVFVLXXXXXXXXXX------XXXXXVPGEG---------PFCLIVCPSRELARQTYEVV 239
F+L E P L++ P+RELA Q Y+
Sbjct: 275 AAFLLPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEA 334
Query: 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299
+F R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD
Sbjct: 335 RKFAYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDY 388
Query: 300 CRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKP 355
C+YL LDEADR++D+GFE IR + + K RQT++FSAT P +IQ AR L +
Sbjct: 389 CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEY 448
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEY 413
+ + VGR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++
Sbjct: 449 IFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDF 508
Query: 414 LLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA 473
L +G ++HG + Q +RE A+ F++G+ ++VAT VA++GLD +++HVIN+D+P+
Sbjct: 509 LYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPS 568
Query: 474 EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533
+IE YVHRIGRTGR G G+AT+F N S T DL +L EAKQ +P L L E
Sbjct: 569 DIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITK-DLLDILVEAKQEVPSWLENL--AYE 625
Query: 534 DVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRG 586
TN K + GG G RD ++ + R+ G GG RG
Sbjct: 626 HQHKSTNRGRPK--RFSGGFG--ARDYRQMPGGGNTFGNRGARNTGGHGGNRG 674
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 161/441 (36%), Positives = 245/441 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G+++PP I +F D++ E I + +PTP+Q +P++++GRD++ A TGSGKT
Sbjct: 287 GQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKT 346
Query: 195 LVFVLXXXXXXXXX-------XXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMR 247
F++ + P L++ P+RELA Q +E ++F R
Sbjct: 347 AAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSR 406
Query: 248 DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307
+R + GG + Q+ + RG H++VATPGRL+DM+ + K+ L+N R+L LDE
Sbjct: 407 ------MRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDE 460
Query: 308 ADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA 363
ADR++D+GFE IR + + QRQTL+FSAT P +IQ A L + + VGR
Sbjct: 461 ADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRV 520
Query: 364 GAANLDVIQEVEYVKQEAKIVYLLECLQ--KTPPP------VLIFCENKADVDDIHEYLL 415
G+ + ++ Q + +V + K YLL+ L + P LIF E K D + E+L
Sbjct: 521 GSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLY 580
Query: 416 LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEI 475
++HG + Q+ERE A+ F++G +LVAT VA++GLD P ++HVIN+D+P+++
Sbjct: 581 QCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDV 640
Query: 476 ENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDV 535
E YVHRIGRTGR G G+AT+F N+ ++ DL LL E KQ IP + +++
Sbjct: 641 EEYVHRIGRTGRMGNLGVATSFFNE-KNRNICSDLLELLIETKQEIPSFMEDMSSDRGHG 699
Query: 536 DAITNASGVKGCAYCGGLGHR 556
A G G Y GG G R
Sbjct: 700 GAKRAGRGGGG-RYGGGFGSR 719
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 193/542 (35%), Positives = 275/542 (50%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 169 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEY-PPFEKNFYDEHEEIT 227
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 228 SLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 287
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V +SGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 288 VAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 344
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 345 HSECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 398
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 399 NLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 458
Query: 356 VTVNVGRAGAANLDVIQEVE-YVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 459 IRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 518
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 472
L + +HG DQ ER IS FK +LVATDVA++GLD P I+ VINYD+
Sbjct: 519 NLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVA 578
Query: 473 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL--ND 530
+I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L +
Sbjct: 579 RDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDLAMQN 637
Query: 531 PMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKS-----MAIASSRRDYFGSGGYR 585
P G K GGLG+R R P L + S ++ S+ Y S G
Sbjct: 638 PWFRKSRFKGGKGKKLNIGGGGLGYRER--PGLGSESSDRGNNNSVMSNYEAYKPSSGAM 695
Query: 586 GE 587
G+
Sbjct: 696 GD 697
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 193/542 (35%), Positives = 275/542 (50%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 162 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEY-PPFEKNFYDEHEEIT 220
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 221 SLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 280
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V +SGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 281 VAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 337
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 338 HSECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 391
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 392 NLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 451
Query: 356 VTVNVGRAGAANLDVIQEVE-YVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 452 IRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 511
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 472
L + +HG DQ ER IS FK +LVATDVA++GLD P I+ VINYD+
Sbjct: 512 NLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVA 571
Query: 473 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL--ND 530
+I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L +
Sbjct: 572 RDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDLAMQN 630
Query: 531 PMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKS-----MAIASSRRDYFGSGGYR 585
P G K GGLG+R R P L + S ++ S+ Y S G
Sbjct: 631 PWFRKSRFKGGKGKKLNIGGGGLGYRER--PGLGSESSDRGNNNSVMSNYEAYKPSSGAM 688
Query: 586 GE 587
G+
Sbjct: 689 GD 690
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 160/409 (39%), Positives = 236/409 (57%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G D+P P+ F + + ++ + PTP+Q +P+V++GRD++ A TGSGKT
Sbjct: 178 GHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKT 237
Query: 195 --LVFVLXXXXXXXXXXXXXXXVPGE-G------PFCLIVCPSRELARQTYEVVEQFLTP 245
+F + G+ G P LI+ P+REL Q ++ +F
Sbjct: 238 GGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKF--- 294
Query: 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTL 305
A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL L
Sbjct: 295 ---AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLIL 351
Query: 306 DEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361
DEADR++D+GFE IR + + RQTL+FSAT P IQ AR L V ++VG
Sbjct: 352 DEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVG 411
Query: 362 RAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGV 419
R G+ + ++ Q+VEYV+ K LL+ L T LIF E K D + E+L+ +
Sbjct: 412 RVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRF 471
Query: 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 479
A A+HG + Q ERE A+ F++G+ +LVAT VA++GLD P++ HVINYD+P +I++YV
Sbjct: 472 PATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYV 531
Query: 480 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
HRIGRTGR G TGIAT F N+ + + DL LL+EA Q +P L +
Sbjct: 532 HRIGRTGRAGNTGIATAFFNRG-NRGVVRDLIDLLKEAHQEVPSFLESI 579
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 198/522 (37%), Positives = 270/522 (51%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPL-LTGWKPPLPIRRMSKKAC- 122
+PT +VQ+E+E +E SD + +++ + D L + I +K C
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSELDRNYFEIKIIYNTKDECI 226
Query: 123 -----DLIRKQWHII--VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
+LI H I V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 227 DASNLELINTL-HFISRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V LSGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQ-EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD--VLVATDVASKGLDFPDIQHVINYD 470
L +G +HG DQ ER IS FK KKD VLVATDVA++GLD P I+ VINYD
Sbjct: 517 NLKQEGHNLGLLHGDMDQSERNKVISDFK--KKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
+ +I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDL-- 631
Query: 531 PMEDV----DAITNASGVKGCAYCGGLGHRIRDCPKLEHQKS 568
M++ G K GGLG+R R P L + S
Sbjct: 632 AMQNAWFRKSRFKGGKGKKLNIGGGGLGYRER--PGLGSENS 671
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 193/522 (36%), Positives = 270/522 (51%)
Query: 66 SPTEQIVQQEKE-MIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP---------IR 115
+PT +VQ+E+E +E SD + +++ + D + PP I
Sbjct: 167 NPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIDY-PPFEKNFYNEHEEIT 225
Query: 116 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ + +R + ++ V G P P +F F E ++ +++ QPTPIQ QG+P
Sbjct: 226 NLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVP 285
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
V LSGRDMIGIA TGSGKT F+ PG+GP +IVCP+REL +Q
Sbjct: 286 VALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE---PGDGPIAVIVCPTRELCQQI 342
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK
Sbjct: 343 HAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 396
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDP 456
Query: 356 VTVNVGRAGAANLDVIQEVEYVKQ-EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHE 412
+ V G G AN DV Q VE + +K +L L + + VL+F KA+ +++
Sbjct: 457 IRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD--VLVATDVASKGLDFPDIQHVINYD 470
L +G +HG DQ ER I FK KKD VLVATDVA++GLD P I+ VINYD
Sbjct: 517 NLKQEGHNLGLLHGDMDQSERNKVILDFK--KKDIPVLVATDVAARGLDIPSIKTVINYD 574
Query: 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
+ +I+ + HRIGRTGR G+ G+A T + S DL L+ A Q + L +L
Sbjct: 575 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG-DLVRNLEGANQHVSKELLDL-- 631
Query: 531 PMEDV----DAITNASGVKGCAYCGGLGHRIRDCPKLEHQKS 568
M++ G K GGLG+R R P L + S
Sbjct: 632 AMQNAWFRKSRFKGGKGKKLNIGGGGLGYRER--PGLGSENS 671
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 170/440 (38%), Positives = 239/440 (54%)
Query: 125 IRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184
+R++ ++ V G P P +F F E ++ +++ QPTPIQ QG+P+ LSGRD I
Sbjct: 239 LRRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAI 298
Query: 185 GIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244
GIA TGSGKT F+ PGEGP +IVCP+REL +Q + ++F
Sbjct: 299 GIAKTGSGKTAAFIWPILVHIMDQKELE---PGEGPIAVIVCPTRELCQQIHAECKRF-- 353
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
Y LR++ GG M Q + ++ G IVV TPGRL D + KK +L +L
Sbjct: 354 ---GKAY-GLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLV 409
Query: 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364
DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR LV P+ V G G
Sbjct: 410 FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIG 469
Query: 365 AANLDVIQEVEYVKQ-EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEA 421
AN D+ Q VE ++ + K +L L + + VL+F KA+ +++ L+ +G
Sbjct: 470 EANEDITQIVEVLQSGQDKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSL 529
Query: 422 VAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHR 481
+HG DQ ER I+ FK VLVATDVA++GLD P I+ V+NYD+ +I+ + HR
Sbjct: 530 GLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHR 589
Query: 482 IGRTGRCGKTGIATTFINKNQSETTLL-DLKHLLQEAKQRIPPVLAEL--NDPMEDVDAI 538
IGRTGR G+ G+A T + +T+ DL L+ A Q + L +L +P
Sbjct: 590 IGRTGRAGEKGVAYTLLTTK--DTSFAGDLVRNLEGANQSVSKDLLDLAMQNPWFRKSRF 647
Query: 539 TNASGVKGCAYCGGLGHRIR 558
G K GGLG+R R
Sbjct: 648 KGGKGKKINIGGGGLGYRER 667
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 157/414 (37%), Positives = 232/414 (56%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G + P PI F D+ E I+ + +PTP+Q +P++ S RD++ A TGSGKT
Sbjct: 200 GHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKT 259
Query: 195 LVFVLXXXXXXXXXX------XXXXXVPGEG--------PFCLIVCPSRELARQTYEVVE 240
F+L G P L++ P+RELA Q Y+
Sbjct: 260 AAFLLPVLSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEAR 319
Query: 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300
+F R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C
Sbjct: 320 KF--SYRS----HVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLDYC 373
Query: 301 RYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPV 356
YL LDEADR++D+GFE IR + + K RQT++FSAT P +IQ AR L +
Sbjct: 374 NYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYI 433
Query: 357 TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYL 414
+ VGR G+ + ++ Q+V +V++ K +LL+ L T L+F E K D + ++L
Sbjct: 434 FLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFL 493
Query: 415 LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474
+G ++HG + Q +RE A+ F++G+ +LVAT VA++GLD +++HVIN+D+P++
Sbjct: 494 YREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSD 553
Query: 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
IE YVHRIGRTGR G G+AT+F N T DL +L EAKQ +P L L
Sbjct: 554 IEEYVHRIGRTGRVGNLGLATSFFNDKNGNITK-DLLDILVEAKQEVPSWLESL 606
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 700 (251.5 bits), Expect = 9.3e-69, P = 9.3e-69
Identities = 171/484 (35%), Positives = 257/484 (53%)
Query: 108 WKPPLPIRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQP 166
W P + M++ +R + I V G+D+P P++ + PIL + +P
Sbjct: 342 WVEPYELSEMTEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKP 401
Query: 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVC 226
T IQ+Q LPV++SGRD++G+A TGSGKT+ F+L EGP LI+
Sbjct: 402 TAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKD---NEGPIGLILT 458
Query: 227 PSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL 286
P+RELA Q + + FL + LR + GG ++ Q+ +KRG IVVAT GR+
Sbjct: 459 PTRELAVQIFRDCKPFLKTL------GLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRM 512
Query: 287 KDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343
D+LA + ++L Y+ LDEADR+ D+GFE + ++F + + RQT+LFSATMP
Sbjct: 513 IDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATMPKI 572
Query: 344 IQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPV--L 398
+ + L PV + VG ++ Q VE +++K LLE L K V L
Sbjct: 573 MDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSL 632
Query: 399 IFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458
IF E + D++ LL KG +++HGGKDQ +R+ IS FK+G V++AT VA++GL
Sbjct: 633 IFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGL 692
Query: 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAK 518
D ++ V+NYD P +E+YVHR GRTGR G TG A TF+ + Q E + + L+++
Sbjct: 693 DVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQ-ENCAIGIAKALEQSG 751
Query: 519 QRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDY 578
Q +P L E+ + A K + GG G KL+ ++ A R+ +
Sbjct: 752 QPVPEKLIEMRKAFREK---VKAGKAKDQSGFGGKG-----LEKLDKEREAARNRERKTH 803
Query: 579 FGSG 582
G
Sbjct: 804 KAEG 807
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 705 (253.2 bits), Expect = 9.4e-69, P = 9.4e-69
Identities = 198/594 (33%), Positives = 295/594 (49%)
Query: 18 RAMEAQKILQRKGQASTLEDELEK--SKLAE-VKPSLLVKASQLKRDQPE-ISPTEQIVQ 73
+A EA K ++ Q L D L+ S+LAE P A K +PE I E V
Sbjct: 405 KAEEADK-MEVDAQEEEL-DPLDAFMSELAESAPPKKKAGAKFSKAQEPEAIFGDEHDVS 462
Query: 74 QEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKP--------PLPIRRMSKKACDLI 125
+ D + S + K I D ++P P + +MS++ +
Sbjct: 463 MTAVGEGDAEDFLAIASKAKKKKDIPTVDHNKVEYEPFRRKFYTEPSDLAQMSEEEAANL 522
Query: 126 RKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184
R + I V G D+P P++ + L + G T IQ Q +P ++SGRD+I
Sbjct: 523 RLELDGIKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVI 582
Query: 185 GIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244
G+A TGSGKT+ F++ EGP LI+ P+RELA Q ++ + FL
Sbjct: 583 GVAKTGSGKTMAFLIPMFRHIKDQRPLENM---EGPIGLIMTPTRELATQIHKDCKPFLK 639
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR--- 301
+ +LR + GG ++ Q+ +KRG I+V TPGR+ D+LA + N R
Sbjct: 640 AL------NLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVT 693
Query: 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361
Y+ LDEADR+ D+GFE + ++ + + RQT+LFSAT P ++ AR L KP+ + VG
Sbjct: 694 YVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVG 753
Query: 362 RAGAANLDVIQEVEYVKQEAKIVYLLECL-------QKTPPPVLIFCENKADVDDIHEYL 414
++ Q VE +E K V LLE L + LIF + + D + L
Sbjct: 754 GRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLREL 813
Query: 415 LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474
+ KG +++HGGKDQ +R+ I FKAG VL+AT VA++GLD ++ V+NYD P
Sbjct: 814 MRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNH 873
Query: 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP-ME 533
+E+YVHR GRTGR G TG A TF+ ++Q E +D+ L+++ Q +P + +L D +E
Sbjct: 874 LEDYVHRAGRTGRAGNTGTAVTFLTEDQ-ERYSVDIAKALKQSGQEVPEAVQKLVDSFLE 932
Query: 534 DVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGE 587
V A + G GG G +L+ ++ A RR Y G GE
Sbjct: 933 KVKAGKEKASNSGF---GGKG-----LERLDQERDAARMRERRTY--KTGEEGE 976
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 699 (251.1 bits), Expect = 1.6e-68, P = 1.6e-68
Identities = 174/490 (35%), Positives = 263/490 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 281 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 338
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +MS++ ++ R + I V G+ P PIK++ IL LK G +PTPI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P ++SGRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE---GEGPIAVIMTPTR 455
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 456 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 569
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q+V +++E K + LLE L + V+IF + +
Sbjct: 570 LARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ 629
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 630 EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLI 689
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + +PP
Sbjct: 690 LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAG-DIIKALELSGTAVPPD 748
Query: 525 LAELNDPMED 534
L +L +D
Sbjct: 749 LEKLWSDFKD 758
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 699 (251.1 bits), Expect = 1.6e-68, P = 1.6e-68
Identities = 174/490 (35%), Positives = 263/490 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 281 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 338
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +MS++ ++ R + I V G+ P PIK++ IL LK G +PTPI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P ++SGRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE---GEGPIAVIMTPTR 455
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 456 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 569
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q+V +++E K + LLE L + V+IF + +
Sbjct: 570 LARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ 629
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 630 EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLI 689
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + +PP
Sbjct: 690 LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAG-DIIKALELSGTAVPPD 748
Query: 525 LAELNDPMED 534
L +L +D
Sbjct: 749 LEKLWSDFKD 758
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 699 (251.1 bits), Expect = 1.6e-68, P = 1.6e-68
Identities = 174/490 (35%), Positives = 263/490 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 281 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 338
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +MS++ ++ R + I V G+ P PIK++ IL LK G +PTPI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P ++SGRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE---GEGPIAVIMTPTR 455
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 456 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 569
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q+V +++E K + LLE L + V+IF + +
Sbjct: 570 LARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ 629
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 630 EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLI 689
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + +PP
Sbjct: 690 LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAG-DIIKALELSGTAVPPD 748
Query: 525 LAELNDPMED 534
L +L +D
Sbjct: 749 LEKLWSDFKD 758
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 699 (251.1 bits), Expect = 1.6e-68, P = 1.6e-68
Identities = 174/490 (35%), Positives = 263/490 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 281 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 338
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +MS++ ++ R + I V G+ P PIK++ IL LK G +PTPI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P ++SGRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE---GEGPIAVIMTPTR 455
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 456 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 569
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q+V +++E K + LLE L + V+IF + +
Sbjct: 570 LARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ 629
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 630 EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLI 689
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + +PP
Sbjct: 690 LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAG-DIIKALELSGTAVPPD 748
Query: 525 LAELNDPMED 534
L +L +D
Sbjct: 749 LEKLWSDFKD 758
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 699 (251.1 bits), Expect = 1.6e-68, P = 1.6e-68
Identities = 174/490 (35%), Positives = 263/490 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 281 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 338
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +MS++ ++ R + I V G+ P PIK++ IL LK G +PTPI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P ++SGRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE---GEGPIAVIMTPTR 455
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 456 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 569
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q+V +++E K + LLE L + V+IF + +
Sbjct: 570 LARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ 629
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 630 EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLI 689
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + +PP
Sbjct: 690 LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAG-DIIKALELSGTAVPPD 748
Query: 525 LAELNDPMED 534
L +L +D
Sbjct: 749 LEKLWSDFKD 758
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 699 (251.1 bits), Expect = 1.6e-68, P = 1.6e-68
Identities = 174/490 (35%), Positives = 263/490 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 281 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 338
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +MS++ ++ R + I V G+ P PIK++ IL LK G +PTPI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P ++SGRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE---GEGPIAVIMTPTR 455
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 456 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 569
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q+V +++E K + LLE L + V+IF + +
Sbjct: 570 LARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ 629
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 630 EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLI 689
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + +PP
Sbjct: 690 LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAG-DIIKALELSGTAVPPD 748
Query: 525 LAELNDPMED 534
L +L +D
Sbjct: 749 LEKLWSDFKD 758
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 696 (250.1 bits), Expect = 3.4e-68, P = 3.4e-68
Identities = 174/490 (35%), Positives = 262/490 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 281 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 338
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +MS + ++ R + I V G+ P PIK++ IL LK G +PTPI
Sbjct: 339 VPELAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P ++SGRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE---GEGPIAVIMTPTR 455
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 456 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 509
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 510 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 569
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q+V +++E K + LLE L + V+IF + +
Sbjct: 570 LARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQ 629
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 630 EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLI 689
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + +PP
Sbjct: 690 LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAG-DIIKALELSGTAVPPD 748
Query: 525 LAELNDPMED 534
L +L +D
Sbjct: 749 LEKLWSDFKD 758
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 666 (239.5 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 157/424 (37%), Positives = 233/424 (54%)
Query: 117 MSKKACDLIRKQ-----WHIIVDGED--IPPPIKNFKD--MRFPEPILKKLKAKGIVQPT 167
MSK D RK+ W + DGE IP P F D +PE +++ +K G +PT
Sbjct: 208 MSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPE-VMENIKKAGFQKPT 266
Query: 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCP 227
PIQ Q P+VL G D+IG+A TG+GKTL +++ P L++ P
Sbjct: 267 PIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQ--RNRPGMLVLTP 324
Query: 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK 287
+RELA Q ++ Y LR++ GG + Q+E +K+GV I++ATPGRL
Sbjct: 325 TRELALQVEGECCKY-------SYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLN 377
Query: 288 DMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347
D+ +NL N YL LDEAD+++D+GFE I ++ + RQT++ SAT P +
Sbjct: 378 DLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPHSVHRL 437
Query: 348 ARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENK 404
A+S L +P+ V VG A V Q + +E K ++ LQ + V++F K
Sbjct: 438 AQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRK 497
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
A D + L+L + ++HG ++Q +RE A+ +FK GK +L+ATD+AS+GLD D+
Sbjct: 498 AVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVT 557
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
HV N+D P IE YVHRIGRTGR G+TG++ T + +N +L ++L+ A Q IP
Sbjct: 558 HVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVAS-ELINILERANQSIPEE 616
Query: 525 LAEL 528
L +
Sbjct: 617 LVSM 620
Score = 43 (20.2 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 56 SQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMS 90
S++K Q + T QI+Q++ E + + K + +
Sbjct: 88 SKIKNIQSTTNTTIQIIQEQPESLVKIFGSKAMQT 122
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 651 (234.2 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 151/407 (37%), Positives = 221/407 (54%)
Query: 129 WHIIVDGEDIP--PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGI 186
W + G + PP F + + + G P+PIQ Q P+ + RD++ I
Sbjct: 213 WSALFGGPNFLRCPPAAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAI 272
Query: 187 AFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246
A TGSGKTL +++ GP L++ P+RELA Q +F
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM----GPTILVLSPTRELATQIQVEALKF---- 324
Query: 247 RDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTL 305
G + C+ GG QL+ ++RGV IVVATPGRL D+L K+++L YL L
Sbjct: 325 ---GKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVL 381
Query: 306 DEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG- 364
DEADR++D+GFE IR++ + +RQTL+++AT P +++ A LV P VN+G
Sbjct: 382 DEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDE 441
Query: 365 -AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLLKGVEA 421
AN + Q +E + K L + L+ P ++IFC K D + L + A
Sbjct: 442 LVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGA 500
Query: 422 VAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHR 481
A+HG K Q ER+ ++ F++G+ VLVATDVA++GLD DI+ V+NYD P +E+YVHR
Sbjct: 501 AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHR 560
Query: 482 IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
IGRTGR G TG+A TF +Q DL +L+ A Q++PP + E+
Sbjct: 561 IGRTGRAGATGLAYTFFG-DQDAKHASDLIKILEGANQKVPPQVREM 606
Score = 55 (24.4 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 127 KQWHIIVDGEDIPPPIKNFKDMRFPEPILKK 157
++ I V G +PPP+ +F+ P +L++
Sbjct: 145 RKHEITVSGGQVPPPLMSFEATGLPNELLRE 175
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 678 (243.7 bits), Expect = 1.0e-67, Sum P(2) = 1.0e-67
Identities = 175/511 (34%), Positives = 265/511 (51%)
Query: 44 LAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAK----GIT 99
+A+ K + L K ++++ + E + E E I + + + +ELAK +T
Sbjct: 409 VAKKKTTTLKKGEVIEQNMDSL---EYSSEDELEDIRDTAVNLAMKHRKELAKIDHSSVT 465
Query: 100 YTDPLLTGWKPPLP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKK 157
Y P + +P + RM+ + R I V G+ P PIK + + ++
Sbjct: 466 YA-PFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEV 524
Query: 158 LKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPG 217
L+ G +PTPIQ Q +P ++SGRD+IGIA TGSGKTL F+L G
Sbjct: 525 LRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMED---G 581
Query: 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVH 277
+G +I+ P+REL Q + + +F + G LR + GG + Q+ +KRG
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKF---SKSLG---LRPVCVYGGTGISEQIAELKRGAE 635
Query: 278 IVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTL 334
I+V TPGR+ DMLA + N R Y+ LDEADR+ D+GFE + + D+ + RQT+
Sbjct: 636 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 695
Query: 335 LFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QK 392
+FSAT P +++ AR L KP+ V VG +V Q V + +AK LLE L +
Sbjct: 696 MFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQ 755
Query: 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452
+++F + + + D + L+ +++HGG DQ +R+ I FK+GK +L+AT
Sbjct: 756 EAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATS 815
Query: 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512
VA++GLD D+ V+NYD+P E+YVHR GRTGR GK G A TFI QS D+
Sbjct: 816 VAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAG-DIIR 874
Query: 513 LLQEAKQRIPPVLAELNDPMEDVDAITNASG 543
+ + IP AEL + A+ A G
Sbjct: 875 AMDLSGTLIP---AELQALWTEYKALQEAEG 902
Score = 46 (21.3 bits), Expect = 1.0e-67, Sum P(2) = 1.0e-67
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 16 KRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSL--LVKASQLKRDQPEISPTEQIVQ 73
K + E K +R Q E E + + A P + L+ S + + EI EQ +
Sbjct: 133 KEKERERDKDRERDRQR---EKESDSRRAAAAAPLIIPLLSTSCSEEEVEEIDKEEQQRR 189
Query: 74 QEKEMIE 80
E+EMI+
Sbjct: 190 LEQEMIK 196
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 157/406 (38%), Positives = 230/406 (56%)
Query: 131 IIVD--GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAF 188
I+VD G ++P I F++ + E + + G V+PTP+Q GLP++ +GRD++ A
Sbjct: 167 ILVDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQ 226
Query: 189 TGSGKTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMR 247
TGSGKT F+L + P +IV P+REL Q Y+ +F
Sbjct: 227 TGSGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKF----- 281
Query: 248 DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307
G +R ++ GGV+ Q+ +++G +++ TPGRL DM+ + K+ L R+L LDE
Sbjct: 282 SFG-TCVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDE 340
Query: 308 ADRLVDLGFEDDIREVFDH----FKAQRQTLLFSATMPTKIQNFARSAL-VKPVTVNVGR 362
ADR++D+GFE D+R + K +RQTL+FSAT P IQ A L V + V VG
Sbjct: 341 ADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGV 400
Query: 363 AGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEA 421
G A DV Q V + K LL+ L+ ++F E K D I +L + V
Sbjct: 401 VGGACTDVEQTFLQVTKFNKREQLLDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPT 460
Query: 422 VAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHR 481
++HG ++Q ERE A++ F++GK VLVAT VAS+GLD PD+QHV+N+D+P I++YVHR
Sbjct: 461 TSIHGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHR 520
Query: 482 IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
IGRTGRCG TG A +F + + L +L +A+Q +P L E
Sbjct: 521 IGRTGRCGNTGRAVSFYDPDVDSQLARSLVGILAKAQQEVPSWLEE 566
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 158/439 (35%), Positives = 242/439 (55%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
G+D+P PI F D+ E I + +K G +PTP+Q +P + GRD++ A TGSGKT
Sbjct: 223 GDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKT 282
Query: 195 LVFV--LXXXXXXXXXXXXXXXVPGEG------PFCLIVCPSRELARQTYEVVEQFL--T 244
F+ L V G P L++ P+REL+ Q + +F T
Sbjct: 283 AAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRT 342
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
P+ A LL G + + Q+ ++ G HI++ATPGRL D++ + + ++ CRYL
Sbjct: 343 PITSA-------LLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLV 395
Query: 305 LDEADRLVDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVN 359
LDEADR++D+GFE IR++ + K +R T +FSAT P +IQ A+ L + V +
Sbjct: 396 LDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLA 455
Query: 360 VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLK 417
VGR G+ + +++Q++ +V+++ K YL++ L T L+F E K D+ YL +
Sbjct: 456 VGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQ 515
Query: 418 GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 477
E V +HG Q ERE + F+ G +LVAT VA++GLD P+++HVINYD+P++++
Sbjct: 516 NYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDE 575
Query: 478 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDA 537
YVHRIGRTGR G G+AT+F N +++ +L L+ EA Q +P L ++ M
Sbjct: 576 YVHRIGRTGRVGNVGLATSFFN-DKNRNIARELMDLIVEANQELPDWLEGMSGDMRSGGG 634
Query: 538 ITNASGVKGCAYCGGLGHR 556
G GG HR
Sbjct: 635 YRGRGGRGNGQRFGGRDHR 653
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 162/411 (39%), Positives = 226/411 (54%)
Query: 128 QW----HIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDM 183
QW + ++G +P P+ F + P I + L K +PT IQ P+ +SGRD+
Sbjct: 111 QWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDI 169
Query: 184 IGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFL 243
I IA TGSGKTL F+L GEGP L++ P+RELA+Q EV F
Sbjct: 170 ISIAKTGSGKTLAFMLPALVHITKQAHRQR---GEGPAVLVLLPTRELAQQVQEVSIDFC 226
Query: 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303
+ G L+ GG Q ++RGV IVVATPGRL D L N+ C YL
Sbjct: 227 HSL---G---LKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYL 280
Query: 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA 363
LDEADR++D+GFE I+++ + RQTL+FSAT P +++ A +NVG
Sbjct: 281 VLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSL 340
Query: 364 G-AANLDVIQEVEYVKQEAKIVYLLECLQ----KTPPPVLIFCENKADVDDIHEYLLLKG 418
AAN ++ Q V+ +++ AK L+E L + +IF E K D++ + G
Sbjct: 341 ELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDG 400
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
+ +HG K+Q ER++ + FKAGK +++ATDVA++GLD DI+ VINYD P E+Y
Sbjct: 401 WPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDY 460
Query: 479 VHRIGRTGRCGKTGIATTFI-NKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
VHRIGRTGR K G A TF + N S+ DL +L EAKQ +P L ++
Sbjct: 461 VHRIGRTGRSDKKGTAYTFFTHTNASKAK--DLLKVLDEAKQTVPQALRDM 509
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 654 (235.3 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 166/489 (33%), Positives = 261/489 (53%)
Query: 61 DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKK 120
+ E S + ++ + ++N K L S+ + Y + ++ + +S +
Sbjct: 214 ESDEESRLQDLISTKLTKLQNKG--KELQSIDHSQEN--YQEFRKVFYREAYELSALSDE 269
Query: 121 ACDLIRKQW-HIIVDGEDIPPPIKNFKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVL 178
+LIR+ +I V G D+P PI + + P + + K +P+ IQ Q LP +L
Sbjct: 270 QVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTIL 329
Query: 179 SGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEV 238
SGRD+IGIA TGSGKTL +VL +GP LI+ P+RELA Q +
Sbjct: 330 SGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKD---NQGPIGLILSPTRELALQIEKE 386
Query: 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---M 295
+ F T + +LR C GG + +Q+ +K+GV I+V TPGR+ D+LA +
Sbjct: 387 ILNF-TKRNN----NLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVL 441
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL C ++ LDEADR+ DLGFE + ++ + RQT+LFSAT P K++ A+ L P
Sbjct: 442 NLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDP 501
Query: 356 VTVNVGRAGAANLDVIQEV-----------EYVKQEAKIVY-LLECLQKTPPP--VLIFC 401
V + VG ++ QEV +Y +Q + ++ +L Q P +L+F
Sbjct: 502 VVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFT 561
Query: 402 ENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK--DVLVATDVASKGLD 459
E + D D++ LL A+A+HGGKDQ +R+YAI F + ++L+AT +A++GLD
Sbjct: 562 EKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLD 621
Query: 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQ 519
++ VIN+D P +E+YVHR+GRTGR G G A TF++ +Q + + +L L+ +
Sbjct: 622 VRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKE-VFNLVKALKLSHS 680
Query: 520 RIPPVLAEL 528
I P L E+
Sbjct: 681 DIDPKLEEI 689
Score = 43 (20.2 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 16 KRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKR 60
K++ + Q+ +Q K A ED + EVK S + + KR
Sbjct: 48 KQQQQQEQEEVQNK--AKKTEDSTNNTSTEEVKKSRQQRIEEWKR 90
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 654 (235.3 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 166/489 (33%), Positives = 261/489 (53%)
Query: 61 DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKK 120
+ E S + ++ + ++N K L S+ + Y + ++ + +S +
Sbjct: 214 ESDEESRLQDLISTKLTKLQNKG--KELQSIDHSQEN--YQEFRKVFYREAYELSALSDE 269
Query: 121 ACDLIRKQW-HIIVDGEDIPPPIKNFKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVL 178
+LIR+ +I V G D+P PI + + P + + K +P+ IQ Q LP +L
Sbjct: 270 QVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTIL 329
Query: 179 SGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEV 238
SGRD+IGIA TGSGKTL +VL +GP LI+ P+RELA Q +
Sbjct: 330 SGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKD---NQGPIGLILSPTRELALQIEKE 386
Query: 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---M 295
+ F T + +LR C GG + +Q+ +K+GV I+V TPGR+ D+LA +
Sbjct: 387 ILNF-TKRNN----NLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVL 441
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
NL C ++ LDEADR+ DLGFE + ++ + RQT+LFSAT P K++ A+ L P
Sbjct: 442 NLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDP 501
Query: 356 VTVNVGRAGAANLDVIQEV-----------EYVKQEAKIVY-LLECLQKTPPP--VLIFC 401
V + VG ++ QEV +Y +Q + ++ +L Q P +L+F
Sbjct: 502 VVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFT 561
Query: 402 ENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK--DVLVATDVASKGLD 459
E + D D++ LL A+A+HGGKDQ +R+YAI F + ++L+AT +A++GLD
Sbjct: 562 EKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLD 621
Query: 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQ 519
++ VIN+D P +E+YVHR+GRTGR G G A TF++ +Q + + +L L+ +
Sbjct: 622 VRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKE-VFNLVKALKLSHS 680
Query: 520 RIPPVLAEL 528
I P L E+
Sbjct: 681 DIDPKLEEI 689
Score = 43 (20.2 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 16 KRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKR 60
K++ + Q+ +Q K A ED + EVK S + + KR
Sbjct: 48 KQQQQQEQEEVQNK--AKKTEDSTNNTSTEEVKKSRQQRIEEWKR 90
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 157/423 (37%), Positives = 236/423 (55%)
Query: 117 MSKKACDLIRKQ-WHIIV----DGED--IPPPIKNFKDMRFPEP-ILKKLKAKGIVQPTP 168
MS+ D+ RK+ ++++ DGE IP PI F+D P P ++K +K G +PTP
Sbjct: 190 MSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQKPTP 249
Query: 169 IQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPS 228
IQ Q P+VL G D+IGIA TG+GKTL +++ GP L++ P+
Sbjct: 250 IQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGK--RNGPGMLVLTPT 307
Query: 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKD 288
RELA Q ++ Y L+++ GG + + Q++ + +GV I++ATPGRL D
Sbjct: 308 RELALQVGAECSKY-------SYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLND 360
Query: 289 MLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348
+ +NL + YL LDEAD+++DLGFE I ++ + RQT++ SAT P I+ A
Sbjct: 361 LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLA 420
Query: 349 RSALVKPVTVNVGRAGAANLDVI-QEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKA 405
S L +P+ V VG +D + Q + +E K E LQ P V++F K
Sbjct: 421 HSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKL 480
Query: 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 465
DD+ L ++G+ ++HG ++Q +RE A+ FK GK +L+ATD+AS+GLD D+ H
Sbjct: 481 IADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTH 540
Query: 466 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
V NY+ P IE YVHR+GRTGR GK G + T + ++ + +L +LQ A Q IP L
Sbjct: 541 VFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG-ELIEILQRANQSIPEDL 599
Query: 526 AEL 528
+
Sbjct: 600 LSM 602
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 157/423 (37%), Positives = 236/423 (55%)
Query: 117 MSKKACDLIRKQ-WHIIV----DGED--IPPPIKNFKDMRFPEP-ILKKLKAKGIVQPTP 168
MS+ D+ RK+ ++++ DGE IP PI F+D P P ++K +K G +PTP
Sbjct: 181 MSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQKPTP 240
Query: 169 IQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPS 228
IQ Q P+VL G D+IGIA TG+GKTL +++ GP L++ P+
Sbjct: 241 IQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGK--RNGPGMLVLTPT 298
Query: 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKD 288
RELA Q ++ Y L+++ GG + + Q++ + +GV I++ATPGRL D
Sbjct: 299 RELALQVGAECSKY-------SYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLND 351
Query: 289 MLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348
+ +NL + YL LDEAD+++DLGFE I ++ + RQT++ SAT P I+ A
Sbjct: 352 LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLA 411
Query: 349 RSALVKPVTVNVGRAGAANLDVI-QEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKA 405
S L +P+ V VG +D + Q + +E K E LQ P V++F K
Sbjct: 412 HSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKL 471
Query: 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 465
DD+ L ++G+ ++HG ++Q +RE A+ FK GK +L+ATD+AS+GLD D+ H
Sbjct: 472 IADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTH 531
Query: 466 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
V NY+ P IE YVHR+GRTGR GK G + T + ++ + +L +LQ A Q IP L
Sbjct: 532 VFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG-ELIEILQRANQSIPEDL 590
Query: 526 AEL 528
+
Sbjct: 591 LSM 593
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 159/408 (38%), Positives = 231/408 (56%)
Query: 131 IIVD--GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAF 188
I+VD G + P I F++ + + K + G V+PTP+Q G+P++ +GRD++ A
Sbjct: 263 ILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQ 322
Query: 189 TGSGKTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMR 247
TGSGKT F+L + P +IV P+REL Q Y +F
Sbjct: 323 TGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKF----- 377
Query: 248 DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307
A +R ++ GG++ + V +G +++ ATPGRL D++ + K+ L RYL LDE
Sbjct: 378 -AYGTCVRPVVVYGGINTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDE 436
Query: 308 ADRLVDLGFEDDIREVFDH----FKAQRQTLLFSATMPTKIQNFARSAL-VKPVTVNVGR 362
ADR++D+GFE ++R++ K +RQTL+FSAT P IQ A L V + + VG
Sbjct: 437 ADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGV 496
Query: 363 AGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEA 421
G A DV Q V V Q +K LLE L+ T ++F E K D I +L + +
Sbjct: 497 VGGACSDVEQTVVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKIST 556
Query: 422 VAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHR 481
++HG ++Q ERE A+S F+ G VLVAT VA++GLD +QHV+N+DMP+ I+ YVHR
Sbjct: 557 TSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHR 616
Query: 482 IGRTGRCGKTGIATTFINKNQSETTLL-DLKHLLQEAKQRIPPVLAEL 528
IGRTGRCG TG A +F N +S+T L L +L A+Q +P L E+
Sbjct: 617 IGRTGRCGNTGRAVSFFNP-ESDTPLARSLVKVLSGAQQVVPKWLEEV 663
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 645 (232.1 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 151/408 (37%), Positives = 232/408 (56%)
Query: 127 KQWHIIVDGEDIPPP----IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRD 182
+Q ++V G+ + +K F + PE +L K +P+PIQ P +L GRD
Sbjct: 96 EQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRD 153
Query: 183 MIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSRELARQTYEVVEQ 241
+IGIA TGSGKTL F + + P CL++ P+RELA Q +V
Sbjct: 154 LIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDV--- 210
Query: 242 FLTPMRDAGYP-DLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300
+R+AG P L+++ GG Q+ ++ GV IV+ TPGRL+D++ + L +
Sbjct: 211 ----LREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDV 266
Query: 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL-VKPVTVN 359
++ LDEADR++D+GFE+ +R + + RQ ++FSAT P + A+ + P+ V
Sbjct: 267 SFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVI 326
Query: 360 VGRAG-AANLDVIQEVEYVKQEAK---IVYLLECLQKTPPP-VLIFCENKADVDDIHEYL 414
+G AAN DV+Q +E + + A+ ++ LLE K+ VL+F K + + + +L
Sbjct: 327 IGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFL 386
Query: 415 LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474
+G +AV++HG K Q ER ++S FK G +LVATDVA++GLD PD++ VINY P
Sbjct: 387 QQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLT 446
Query: 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522
E+YVHRIGRTGR GK G+A TF ++ +L ++L+EA Q +P
Sbjct: 447 TEDYVHRIGRTGRAGKKGVAHTFFTP-LNKGLAGELVNVLREAGQVVP 493
Score = 50 (22.7 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 4 EEDDYVEYVPIAKRRAMEAQ-KILQRKGQASTLEDELEKSKLAEVKPSLLVKASQL---K 59
EE+ VE VP +E + ++K + E E EK+K +V P ++A L +
Sbjct: 36 EENHEVEEVPQEVTNGVEEELSNKEKKKKRKREEKESEKNKKKDV-PEKKLEAEDLGEGE 94
Query: 60 RDQPEISPTEQIVQQEK 76
+Q ++ T + V++ K
Sbjct: 95 SEQQKVVVTGKGVEEAK 111
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 160/408 (39%), Positives = 221/408 (54%)
Query: 125 IRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184
+R+ + V G P P+ +F F E ++K ++ QPTPIQ Q +P LSGRD+I
Sbjct: 251 LRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDII 310
Query: 185 GIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244
GIA TGSGKT F+ PG+GP LI+ P+REL+ Q Y ++F
Sbjct: 311 GIAKTGSGKTAAFIWPMLMHVMDQKQLK---PGDGPIGLILAPTRELSLQIYNEAKKF-- 365
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
Y +L + C GG Q + +++G I+VATPGR+ DM+ K NL +L
Sbjct: 366 ---GKVY-NLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLV 421
Query: 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364
LDEADR+ +GFE +R + +H + RQ L+FSAT +I+ AR L PV + G
Sbjct: 422 LDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLN 481
Query: 365 AANLDVIQEVEYVKQEA--KIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVE 420
AN D+ Q V YV K +LL L K + VLIF K D + + LL+K
Sbjct: 482 EANQDITQSV-YVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYN 540
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
+ +HG DQ +R I+ FK + D+LVATDVA++GLD P I++V+NYD +IE + H
Sbjct: 541 CLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTH 600
Query: 481 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
RIGRTGR G+ G A T + E L L+ A Q +P L EL
Sbjct: 601 RIGRTGRAGEKGNAYTLVTDKDKEFAG-HLVRNLEGADQLVPDDLMEL 647
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 680 (244.4 bits), Expect = 2.1e-66, P = 2.1e-66
Identities = 171/484 (35%), Positives = 258/484 (53%)
Query: 54 KASQLKRDQP--EISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPP 111
K ++ DQ E S E+ V + + + ++ L+ + K I Y +P +
Sbjct: 280 KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGK-IEY-EPFRKNFYVE 337
Query: 112 LP-IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPI 169
+P + +M+++ ++ R + I V G+ P PIK + IL LK G +PTPI
Sbjct: 338 VPELAKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPI 397
Query: 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSR 229
Q Q +P +++GRD+IGIA TGSGKT+ F+L GEGP +I+ P+R
Sbjct: 398 QSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEE---GEGPIAVIMTPTR 454
Query: 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289
ELA Q + ++F + G LR + GG + Q+ +KRG I+V TPGR+ DM
Sbjct: 455 ELALQITKECKKF---SKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 508
Query: 290 LAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346
LA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++
Sbjct: 509 LAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA 568
Query: 347 FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENK 404
AR L KP+ V VG DV Q V +++E K + LLE L + V+IF + +
Sbjct: 569 LARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQ 628
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
D + + L+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD +
Sbjct: 629 EHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLM 688
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
V+NY P E+YVHR GRTGR G G A TFI ++Q+ D+ L+ + IP
Sbjct: 689 LVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAG-DIIKALELSGNPIPAD 747
Query: 525 LAEL 528
L +L
Sbjct: 748 LEKL 751
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 671 (241.3 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
Identities = 153/413 (37%), Positives = 227/413 (54%)
Query: 126 RKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIG 185
R + + + G+D P PI+++ E + LK +PT IQ Q +P +++GRD+IG
Sbjct: 492 RSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIG 551
Query: 186 IAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTP 245
IA TGSGKTL F+L PGEG LI+ P+RELA Q + ++F
Sbjct: 552 IARTGSGKTLAFLLPMFRHILAQPKSA---PGEGMIALIMSPTRELALQIHVECKKFSKV 608
Query: 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---Y 302
+ G LRT GG + Q+ +KRG IVV TPGR+ D+L + N R +
Sbjct: 609 L---G---LRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTF 662
Query: 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362
L LDEADR+ D+GF I + D + RQT++FSAT P K++N A+ L KP+ + G
Sbjct: 663 LVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGG 722
Query: 363 AGAANLDVIQEVEYVKQEAKIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLKGVE 420
+ D+ Q VE E + L+E L +LIF + D+++ L +
Sbjct: 723 RSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQ 782
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
+++HG KDQ +R+ IS FK K +L+AT +AS+GLD D+ V+N+D P +E+YVH
Sbjct: 783 CLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVH 842
Query: 481 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533
R+GRTGR G G A TFI ++ + +K L+++ ++P L +LND E
Sbjct: 843 RVGRTGRAGNRGTAYTFITPDEERFSSSIIK-ALEQSGSKVPDELRKLNDTYE 894
Score = 38 (18.4 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 13 PIAKRRAMEAQKILQRKGQAST--LEDELEKSKLAEV-----KPSLLVKASQLKRDQPEI 65
PI K++ M Q + Q+K Q + + +K + + P + + ++ Q +
Sbjct: 159 PIFKQQPMYQQPMYQQKQQQPQPPIFQQQQKQQQPPIFQHHQPPPIYQQPPVYQQQQQQQ 218
Query: 66 SPTEQIVQQEKEMIENLSDRKT 87
P Q QQ++ E + ++T
Sbjct: 219 QPVFQQQQQQRVATEAIQFQQT 240
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 168/510 (32%), Positives = 271/510 (53%)
Query: 27 QRKGQASTLEDELEKSKLAEVKPSLLVKAS-QLKRDQPEISPTEQIVQQEKEMIENLSDR 85
+RK + +LE ++E+S ++K S ++S + E+ + +++ + E S++
Sbjct: 7 KRKTEDESLEVKVEQSSSKKLKMSKRDESSDESSSSDSEVESKSKSIKKSSKSEEKKSEK 66
Query: 86 KTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNF 145
K+ S + + + K + + RK+ +++++G+ P P + F
Sbjct: 67 KSSSSKEDKEEEVKEET------KEDIVLSPTEW------RKKHNVLIEGKSQPNPFQKF 114
Query: 146 KDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXX 205
D FP + + + +G PT IQ Q P++L G D++G+A TGSGKTL F+L
Sbjct: 115 TDYEFPR-MFQHI-FQGFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKI 172
Query: 206 XXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM 265
G P L++ P+RELA+Q EV + T +R +R L GG+
Sbjct: 173 ISLPKRPSY--GATPLVLVMAPTRELAQQIEEVCK---TSIRGTS---IRQLCAYGGLGK 224
Query: 266 RSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD 325
Q +++ GV IV+ TPGRL D+L +K +L + +YL LDEADR++D+GF I + D
Sbjct: 225 IDQSRILRNGVDIVIGTPGRLNDLL--RKHHLSSVQYLVLDEADRMLDMGFMPQIESLID 282
Query: 326 HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVK-----Q 379
+RQTL+FSAT P +++ A L P+ + VG +++V Q + + Q
Sbjct: 283 QIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQ 342
Query: 380 EAKIVY--LLECLQKTPP-PVLIFCENKADVDDIHEYLLL-KGVEAVAVHGGKDQEEREY 435
++Y + + L P V++FC K DD YL K V+++ +H GKDQ RE
Sbjct: 343 SDDLIYDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRES 402
Query: 436 AISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495
+ F+ + +L+ATDVA++GLD P ++ V NY +P IE+YVHRIGRTGR GKTG A
Sbjct: 403 GLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAW 462
Query: 496 TFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
+++ Q+ L DL +LQ Q+IP L
Sbjct: 463 SYVT-TQTPN-LRDLVKILQRTNQKIPDFL 490
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 152/408 (37%), Positives = 231/408 (56%)
Query: 131 IIVD--GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAF 188
I+VD G+D+PP I F++ E + + + G V+ TP+Q +P++++GRD++ A
Sbjct: 260 ILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQ 319
Query: 189 TGSGKTLVFVL-XXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMR 247
TGSGKT F+L + + P +I+ P+REL Q Y +F
Sbjct: 320 TGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKF----- 374
Query: 248 DAGYPD-LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306
Y +R ++ GG+ + V++G +I+ ATPGRL D+++K+K+ L RYL LD
Sbjct: 375 --SYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLD 432
Query: 307 EADRLVDLGFEDDIREVFDH----FKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVG 361
EADR++D+GF +I ++ K +RQTL+FSAT P +I+ A + L + V VG
Sbjct: 433 EADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVG 492
Query: 362 RAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVE 420
G A DV Q V +++ K+ LLE L+ + +IF K D I YL +
Sbjct: 493 LVGGACSDVAQTVLEMRENGKMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFS 552
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
+ ++HG ++Q +RE A+ F+ GK V+V T VA++GLD ++QHVINYD+P E++ YVH
Sbjct: 553 STSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVH 612
Query: 481 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
RIGRTGRCG TG AT+F N L +L +A Q +P L E+
Sbjct: 613 RIGRTGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEI 660
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 674 (242.3 bits), Expect = 4.7e-66, P = 4.7e-66
Identities = 171/448 (38%), Positives = 237/448 (52%)
Query: 114 IRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
IRRM+K R++ I V G D P PIK + ++ LK +PT IQ Q
Sbjct: 274 IRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQ 333
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
+P ++SGRD+IGIA TGSGKTL F+L G+GP +I+ P+RELA
Sbjct: 334 AIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEE---GDGPIAVILAPTRELA 390
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK 292
QTY+ +F P+ L+ GGV + Q+ +KRG IVV TPGR+ D+LA
Sbjct: 391 MQTYKEANKFAKPL------GLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAA 444
Query: 293 ---KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349
K NL YL LDEADR+ D GFE I +V ++ + +QT+LFSAT P ++ AR
Sbjct: 445 NSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALAR 504
Query: 350 SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADV 407
L KPV + VG D+ Q + K + LLE L ++F + +
Sbjct: 505 KVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQEKA 564
Query: 408 DDIHEYLLLKGVEAVA-VHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466
DDI + L+ G +VA +HGG DQ +R+ +I+ FK G VLVAT VA++GLD ++ V
Sbjct: 565 DDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILV 624
Query: 467 INYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526
+NYD P E+YVHR+GRTGR G+ G A TF+ E ++ + A + PP A
Sbjct: 625 VNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGCK-PP--A 681
Query: 527 ELNDPMEDVDAITNASGVKGCAYCGGLG 554
+L E + A G + GG G
Sbjct: 682 DLKAMFERFKSEMAAEGKE--VKLGGKG 707
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 651 (234.2 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 156/424 (36%), Positives = 230/424 (54%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ Q
Sbjct: 62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQ 121
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELA 232
G P+ LSGRDM+GIA TGSGKTL ++L G+GP + V P
Sbjct: 122 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPI-VSVLPFFSTL 177
Query: 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ-LEVVKRGVHIVVATPGRLKDMLA 291
Y F + +C G ++ Q LE + + V I +ATPGR+ D L
Sbjct: 178 FSVYRGGTDFKFKCSSLFW------VCFLGQSLKGQRLEWLSQCVEICIATPGRI-DFLE 230
Query: 292 KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351
K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A
Sbjct: 231 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 290
Query: 352 LVKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLLE-CLQKTPPPVLIFCENKAD 406
L +NVG +AN +++Q V+ +++ K++ L+E + + +IF E K
Sbjct: 291 LRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRR 350
Query: 407 VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466
DD+ + G A+ +HG K Q ER++ ++ F++GK +L+ATDVAS+GLD D++ V
Sbjct: 351 CDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFV 410
Query: 467 INYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526
INYD P E+YVHRIGRT R G A TF + +L +L+EA Q I P L
Sbjct: 411 INYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR-ELIKVLEEANQAINPKLM 469
Query: 527 ELND 530
+L D
Sbjct: 470 QLVD 473
Score = 37 (18.1 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ YVE+ +A+ E ++ ++K
Sbjct: 52 EKNFYVEHPEVARLTPYEVDELRRKK 77
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 155/407 (38%), Positives = 231/407 (56%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D+PP I F++ + + K + G V+ TPIQ +P++++GRD++ A TGSG
Sbjct: 276 VSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSG 335
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P +IV P+REL Q Y +F Y
Sbjct: 336 KTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKF-------SY 388
Query: 252 PD-LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310
+R ++ GG M L+ + G +I+ ATPGRL D++ K+K+ L RYL LDEADR
Sbjct: 389 GTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADR 448
Query: 311 LVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKP--VTVNVGRAG 364
++D+GF +DI + K +RQTL+FSAT P+ IQ+ AR L KP + V VG+ G
Sbjct: 449 MLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREIL-KPDYLFVVVGQVG 507
Query: 365 AANLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVA 423
A DV Q V V + K L+E LQ+ ++F + K D I +L + V + +
Sbjct: 508 GACSDVEQMVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTS 567
Query: 424 VHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIG 483
+HG ++Q+ERE A+ F+ G+ V+VAT VA++GLD ++ +VIN+D+P +I+ YVHRIG
Sbjct: 568 IHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIG 627
Query: 484 RTGRCGKTGIATTFINKNQSETTLL--DLKHLLQEAKQRIPPVLAEL 528
RTGRCG TG A +F +K + + L +L +A Q +P L E+
Sbjct: 628 RTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEV 674
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 159/424 (37%), Positives = 241/424 (56%)
Query: 117 MSKKACDLIRKQWHIIV-----DGED--IPPPIKNFKDM--RFPEPILKKLKAKGIVQPT 167
MS + +L RK+ + I+ +GE IP P+ F+D+ ++P+ I+ ++ G +PT
Sbjct: 206 MSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQYPD-IMANIRKTGFQKPT 264
Query: 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCP 227
PIQ Q P++L G D+IGIA TG+GKTL +++ G GP L++ P
Sbjct: 265 PIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDK-RG-GPGMLVLAP 322
Query: 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK 287
+RELA Q ++ Y +++ GG D ++Q+ VV +GV IV+ATPGRL
Sbjct: 323 TRELALQVEAECLKYT-------YKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLN 375
Query: 288 DMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347
D+ +NL + YL +EADR++D+GFE I ++ + RQT++ SAT P ++
Sbjct: 376 DLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATWPDGVRRL 434
Query: 348 ARSALVKPVTVNVGRAGAANLDVI-QEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENK 404
A+S L P+ V VG A ++ + Q+V + +E K ++ + P +IF K
Sbjct: 435 AKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDSMKPKDKAIIFVGKK 494
Query: 405 ADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464
+ DDI L ++GV ++HG ++Q +RE A+ FK GK +LVATD+AS+GLD DI
Sbjct: 495 STADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDIT 554
Query: 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524
HV N+D P IE YVHR+GRTGR G+TG A T I K + +L +LQ AKQ +P
Sbjct: 555 HVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAAS-ELIDILQRAKQVVPDE 613
Query: 525 LAEL 528
L +
Sbjct: 614 LISM 617
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 151/403 (37%), Positives = 223/403 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P+VL+GRD++ A TGSG
Sbjct: 251 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSG 310
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 311 KTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-----SFG- 364
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 365 TCVRAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRM 424
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTLLFSAT P +IQ A L + V VG+ G A
Sbjct: 425 LDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGA 484
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q + V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 485 CRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 544
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 545 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 604
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + + L +L +A+Q +P L E+
Sbjct: 605 GRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEI 647
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 151/403 (37%), Positives = 222/403 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P+VL+GRD++ A TGSG
Sbjct: 252 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSG 311
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 312 KTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-----SFG- 365
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 366 TCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRM 425
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTLLFSAT P +IQ A L + V VG+ G A
Sbjct: 426 LDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGA 485
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q + V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 486 CRDVQQSILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 545
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 546 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 605
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 606 GRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEI 648
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 150/403 (37%), Positives = 223/403 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P++L+GRD++ A TGSG
Sbjct: 279 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSG 338
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 339 KTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKF-----SFG- 392
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 393 TCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRM 452
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTL+FSAT P +IQ A L + V VG+ G A
Sbjct: 453 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGA 512
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q V V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 513 CRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 572
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 573 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 632
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 633 GRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 675
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 149/403 (36%), Positives = 223/403 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P++L+GRD++ A TGSG
Sbjct: 279 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSG 338
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 339 KTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-----SFG- 392
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 393 TCVRAVVIYGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRM 452
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTL+FSAT P +IQ A L + V VG+ G A
Sbjct: 453 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGA 512
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q + V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 513 CRDVQQTILQVGQYSKREKLVEILRSIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 572
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 573 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 632
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 633 GRCGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEI 675
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 150/403 (37%), Positives = 223/403 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P++L+GRD++ A TGSG
Sbjct: 258 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSG 317
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 318 KTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKF-----SFG- 371
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 372 TCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRM 431
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTL+FSAT P +IQ A L + V VG+ G A
Sbjct: 432 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGA 491
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q V V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 492 CRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 551
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 552 GDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 611
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 612 GRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 654
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 150/403 (37%), Positives = 223/403 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P++L+GRD++ A TGSG
Sbjct: 278 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSG 337
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 338 KTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKF-----SFG- 391
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 392 TCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRM 451
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTL+FSAT P +IQ A L + V VG+ G A
Sbjct: 452 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGA 511
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q V V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 512 CRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 571
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 572 GDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 631
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 632 GRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 674
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 150/404 (37%), Positives = 229/404 (56%)
Query: 134 DGEDIPPPIKNFKDMRFPEP-ILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
D IP P+ F++ P I++ + G +PTPIQ Q PVVL+G D+IGIA TG+G
Sbjct: 268 DKRTIPNPVCTFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTG 327
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYP 252
KTL ++L GP L++ P+RELA Q ++ Y
Sbjct: 328 KTLAYLLPGFIHMDGQPMPRDK--RNGPGMLVLTPTRELALQIEAECNKY-------SYK 378
Query: 253 DLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312
+++ GG D +Q++VV GV IV+ATPGRL D+ + +NL + YL LDEADR++
Sbjct: 379 GFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRML 438
Query: 313 DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQ 372
D+GFE I ++ + RQT++ SAT P ++ A+S L P+ V VG A ++ +Q
Sbjct: 439 DMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQ 498
Query: 373 E-VEYVKQEAKIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429
+ V +V+++ K Y+ + + + P VLIF K DD+ L L+G+ ++HG ++
Sbjct: 499 QTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDRE 558
Query: 430 QEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 489
Q +RE A+ FK G+ +LVATD+AS+GLD DI HV NYD P +E YVHR+GRTGR G
Sbjct: 559 QCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAG 618
Query: 490 KTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533
++G + T + + +L +L+ + Q +P L + + E
Sbjct: 619 RSGESVTLVTREDWRVAA-ELITILERSGQDVPEELVLMAERYE 661
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 150/403 (37%), Positives = 222/403 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P++L+GRD++ A TGSG
Sbjct: 276 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSG 335
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 336 KTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKF-----SFG- 389
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 390 TCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRM 449
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTL+FSAT P +IQ A L + V VG+ G A
Sbjct: 450 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGA 509
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q V Q +K LLE L+ ++F E K D I +L + + ++H
Sbjct: 510 CRDVQQADLQVGQYSKREKLLEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 569
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 570 GDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 629
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 630 GRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 672
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 468 (169.8 bits), Expect = 9.2e-65, Sum P(3) = 9.2e-65
Identities = 127/389 (32%), Positives = 198/389 (50%)
Query: 62 QPEISPTEQIVQQEKEMIENLSDRKT-LMSVRELAKGITYTDPLLTGWKPPLP-IRRMSK 119
+P+ + + ++E ++ + K +S+ + +K I Y +P + + I RM++
Sbjct: 315 EPKSDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSK-IEY-EPFRKNFYIEVKDISRMTQ 372
Query: 120 KACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLS 179
A + RK+ + V G+D+P PI+ + IL LK +P PIQ Q LP+++S
Sbjct: 373 DAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMS 432
Query: 180 GRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVV 239
GRD IG+A TGSGKTL FVL G+GP L++ P+REL +Q Y +
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA---GDGPIGLVMAPTRELVQQIYSDI 489
Query: 240 EQFLTPMRDAGYPDLRTLLCI---GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMN 296
+F + G ++C+ GG + Q+ +KRG IVV TPGR+ D+L
Sbjct: 490 RKFSKAL---G------IICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK 540
Query: 297 LDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
+ N R YL +DEADR+ D+GFE I + + + RQT+LFSAT P +++ AR L
Sbjct: 541 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLN 600
Query: 354 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKA-DVDDI 410
KPV + VG N D+ Q VE + + LLE L + VL+F ++ + D
Sbjct: 601 KPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQEKSISDF 660
Query: 411 HEYLL-LKGVEAVAVHGGKDQEEREYAIS 438
+ L +VA G D +E E ++
Sbjct: 661 KSDVCNLLIATSVAARG-LDVKELELVVN 688
Score = 198 (74.8 bits), Expect = 9.2e-65, Sum P(3) = 9.2e-65
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 433 REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTG 492
+E +IS FK+ ++L+AT VA++GLD +++ V+N+D P E+YVHR+GRTGR G+ G
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 712
Query: 493 IATTFINKNQSETTLLDLKHLLQEAKQRIPP-VLAELNDPMEDV-DAITNASGVKGCAYC 550
A TFI+++ ++ DL L+ ++Q +P V A M V I A G Y
Sbjct: 713 CAVTFISEDDAKYAP-DLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGT---GY- 767
Query: 551 GGLGHRIRD 559
GG G + +
Sbjct: 768 GGSGFKFNE 776
Score = 53 (23.7 bits), Expect = 9.2e-65, Sum P(3) = 9.2e-65
Identities = 22/89 (24%), Positives = 45/89 (50%)
Query: 3 EEEDDYVEYVPIAK-RRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKR- 60
E + D +Y+ + RR E +K +++ + + ED E+S +VK L K ++ R
Sbjct: 79 ERDRDRGKYLKRDRERREREKEKGRKKQKKERSREDCNEESD--DVKCGLKRKRTERSRH 136
Query: 61 ---DQPEISPTEQIVQQEKEMIENLSDRK 86
D + + EQ+ ++K++ E + R+
Sbjct: 137 GDDDVEKKTRDEQVEDEQKQLAEEVEKRR 165
Score = 45 (20.9 bits), Expect = 6.3e-64, Sum P(3) = 6.3e-64
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQ 62
+E+ E V +RR E Q+ L+R+ + + +E SK E + + D
Sbjct: 152 DEQKQLAEEVEKRRRRVQEWQE-LKRQNEEAQIE-----SKGPETGKAWTLDGES---DD 202
Query: 63 PEISPTEQIVQQEKEMIENLSDRKTLMSVRELA 95
S +E V ++ ++ EN D K + S E A
Sbjct: 203 EVKSDSEMDVDRDTKL-ENGGDAKMVASENETA 234
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 169/519 (32%), Positives = 268/519 (51%)
Query: 59 KRDQPEISPTEQIVQQEKEMIENLSDRKTL--MSVRELAKGITYTDPLLTGWKPPLP-IR 115
K + E +PT ++ + + D + L S+ A + PL + P +
Sbjct: 184 KGNSYEFNPTSSESNKDNGDLTGIIDWEALNKASIAATAARWSKCPPLTKNFYKEAPEVA 243
Query: 116 RMSKKACDLIRKQWHIIV--------DGEDIPP---PIKNFKDM--RFPEPILKKLKAKG 162
++K + IR++ + I +GE PP P+ F+ +P+ +L+++ G
Sbjct: 244 NLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPD-MLEEITKMG 302
Query: 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFC 222
+P+PIQ Q P++L G DMIGIA TG+GKTL F+L G
Sbjct: 303 FSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGAN--V 360
Query: 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVAT 282
L++ P+RELA Q V+++ + ++ + GG + Q+ ++RG I++ T
Sbjct: 361 LVLAPTRELALQIEMEVKKY-------SFRGMKAVCVYGGGNRNMQISDLERGAEIIICT 413
Query: 283 PGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342
PGRL D++ +++ YL LDEADR++D+GFE IR+V + RQT++ SAT P
Sbjct: 414 PGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPP 473
Query: 343 KIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK----IVYLLECLQKTPPPV 397
++ A+S + P+ V VG AA V Q ++ ++ + I ++ + T +
Sbjct: 474 GVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDK-I 532
Query: 398 LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 457
+IFC K DD+ L L G +HG +DQ +RE AI+ K+G +LVATDVAS+G
Sbjct: 533 IIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRG 592
Query: 458 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA 517
LD DI HVINYD P IE YVHR+GRTGR G+ G + +F + + +L +LQEA
Sbjct: 593 LDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTR-EDWAMAKELIEILQEA 651
Query: 518 KQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHR 556
+Q +P EL++ A+ + +G + GG G R
Sbjct: 652 EQEVPD---ELHNMARRFKAMKDKRAAEGGGF-GGRGGR 686
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 167/529 (31%), Positives = 284/529 (53%)
Query: 13 PIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQ-LKRD--QPEISPTE 69
P A+ R ++ +Q K + +++ ++K + + +P + V A Q L R+ + ++S +
Sbjct: 110 PEAEVRIFGTEE-MQSKARI-VIDNIVKKQEEYKSEPKVDVAAIQPLDREDTKKDVSGNQ 167
Query: 70 QIVQQEK--EMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRK 127
+++ +K E I S++K + L K Y + +T ++ K+ +++
Sbjct: 168 KLIDWDKFRENILEWSEKK--WAGLPLIKKNFYMESEITSSMSQEQVQNWRKENYNIMCD 225
Query: 128 QWHIIVDGED--IPPPIKNFKD--MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDM 183
+ DGE IP P F+D +PE ++ +K G +PTPIQ Q P++L G D+
Sbjct: 226 D---LKDGEKRPIPNPACKFEDAFQCYPE-VMINIKKAGFQKPTPIQSQAWPIILQGIDL 281
Query: 184 IGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSRELARQTYEVVEQF 242
IG+A TG+GKTL +++ GP L++ P+RELA Q ++
Sbjct: 282 IGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGMLVLTPTRELALQVEAECSKY 341
Query: 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302
Y L+++ GG D Q++ + +GV I++ATPGRL D+ + L + Y
Sbjct: 342 -------SYKGLKSVCVYGGGDRDGQIKDLLKGVDIIIATPGRLNDLQMNNFVYLKSISY 394
Query: 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362
L LDEAD+++D+GFE I ++ + RQT++ SAT P ++ A+S L +P+ V VG
Sbjct: 395 LVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGT 454
Query: 363 AGAANLDVI-QEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKGV 419
+ + Q + ++ K ++ ++ P V+IF KA D + L ++ +
Sbjct: 455 LDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDKVIIFVSRKAVADHLSSDLGIRHI 514
Query: 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 479
++HG ++Q +RE A+ +FK GK +L+ATD+AS+GLD D+ HV NYD P IE YV
Sbjct: 515 SVESLHGNREQGDRERALKNFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYV 574
Query: 480 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
HR+GRTGR G+TG++ T I ++ + +L H+L+ A Q IP L E+
Sbjct: 575 HRVGRTGRAGRTGVSITLITRSDWKIAG-ELIHILERANQSIPEDLVEM 622
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 148/403 (36%), Positives = 221/403 (54%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P++ GRD++ A TGSG
Sbjct: 280 VSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSG 339
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 340 KTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-----SFG- 393
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 394 TCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRM 453
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTL+FSAT P +IQ A L + V VG+ G A
Sbjct: 454 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGA 513
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q + V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 514 CRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 573
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 574 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 633
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 634 GRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEI 676
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 145/407 (35%), Positives = 230/407 (56%)
Query: 132 IVDGED--IPPPIKNFKD--MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIA 187
+ +GE IP P F+D ++PE I++ ++ G +PTPIQ Q P++L G D+IGIA
Sbjct: 187 LTEGEKRPIPKPTCTFEDAFQQYPE-IMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIA 245
Query: 188 FTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMR 247
TG+GKTL +++ GP L++ P+RELA Q ++L
Sbjct: 246 QTGTGKTLSYLMPGFIHIHSQPVSRKQ--RNGPGMLVLTPTRELALQVEAECSKYL---- 299
Query: 248 DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307
Y L+++ GG + + Q++ V +GV I++ATPGRL D+ +NL + YL LDE
Sbjct: 300 ---YKGLKSVCIYGGGNRKGQIQDVTKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDE 356
Query: 308 ADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN 367
AD+++DLGFE I ++ + RQT++ +A+ P + A+S L +P+ V VG
Sbjct: 357 ADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVT 416
Query: 368 LDVI-QEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKGVEAVAV 424
++ + Q + +E K + E LQ P V++F K DD+ L ++G+ ++
Sbjct: 417 VNTVKQNIIVTTEEEKRSLVKEFLQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSL 476
Query: 425 HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGR 484
HG ++Q +R+ A+ F+ G+ +L+ATD+A++GLD D+ HV NY+ P IE YVHR+GR
Sbjct: 477 HGDREQSDRDQALEDFRTGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGR 536
Query: 485 TGRCGKTGIATTFINKNQSETTLLD-LKHLLQEAKQRIPPVLAELND 530
TGR GK G + T + Q + + D L +LQ A Q +PP L + D
Sbjct: 537 TGRAGKIGESITLVT--QDDWKIADELIKILQRANQIVPPSLRSMAD 581
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 148/403 (36%), Positives = 221/403 (54%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P++ GRD++ A TGSG
Sbjct: 280 VSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSG 339
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 340 KTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-----SFG- 393
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 394 TCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRM 453
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTL+FSAT P +IQ A L + V VG+ G A
Sbjct: 454 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGA 513
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q + V Q +K L+E L+ ++F E K D I +L + + ++H
Sbjct: 514 CRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 573
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRIGRT
Sbjct: 574 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 633
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 634 GRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEI 676
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 159/423 (37%), Positives = 238/423 (56%)
Query: 117 MSKKACDLIRKQWHIIV-----DGED--IPPPIKNFKDM--RFPEPILKKLKAKGIVQPT 167
MS + +L RK+ + I+ +GE IP P+ F+D+ ++P+ I+ ++ G +PT
Sbjct: 19 MSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQYPD-IMANIRKTGFQKPT 77
Query: 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCP 227
PIQ Q P++L G D+IGIA TG+GKTL +++ G GP L++ P
Sbjct: 78 PIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDK-RG-GPGMLVLAP 135
Query: 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK 287
+RELA Q ++ Y +++ GG D ++Q+ VV +GV IV+ATPGRL
Sbjct: 136 TRELALQVEAECLKYT-------YKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLN 188
Query: 288 DMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347
D+ +NL + YL LDEADR++D+GFE I ++ + RQT++ SAT P ++
Sbjct: 189 DLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATWPDGVRRL 248
Query: 348 ARSALVKPVTVNVGRAGAANLDVIQE-VEYVKQEAKIVYLLECLQK-TPPPVLIFCENKA 405
A+S L P+ V VG A V+ + +++ K Y+ Q V++F +
Sbjct: 249 AKSYLRNPMIVYVGTLDLAVSGVVLKYLQFDKDIFTWKYMQVNAQSFCTDVVVVFVQLHV 308
Query: 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 465
DDI L ++GV ++HG ++Q +RE A+ FK GK +LVATD+AS+GLD DI H
Sbjct: 309 VADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITH 368
Query: 466 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
V N+D P IE YVHR+GRTGR G+TG A T I K + +L +LQ AKQ +P L
Sbjct: 369 VFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAAS-ELIDILQRAKQVVPDEL 427
Query: 526 AEL 528
+
Sbjct: 428 ISM 430
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 659 (237.0 bits), Expect = 4.6e-64, P = 4.6e-64
Identities = 179/534 (33%), Positives = 266/534 (49%)
Query: 6 DDYVEYVPI-AKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQP- 63
D Y+E V K+ M K K ++ + K ++ + K ++ DQ
Sbjct: 217 DAYMEEVKEEVKKFNMGTMKGANDKKGGMSVTKVVTVVKTKKMPHATKKKGELMENDQDA 276
Query: 64 -EISPTEQIVQQEKEMIE-NLSDRKTLMSVRELAKGITYTDPLLTGWKPPLP-IRRMSKK 120
E S E+ V + + RK L V + I Y +P + +P + RMS +
Sbjct: 277 MEYSSEEEEVDLQTALTGFQTKQRKVLEPVDH--QKIQY-EPFRKNFYVEVPELARMSPE 333
Query: 121 ACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLS 179
R + I V G+ P PIK + +L LK +PTPIQ Q +P ++S
Sbjct: 334 EVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMS 393
Query: 180 GRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVV 239
GRD+IGIA TGSGKT+ F+L EGP +I+ P+RELA Q +
Sbjct: 394 GRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEA---EGPLAVIMTPTRELALQITKEC 450
Query: 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299
++F + LR + GG + Q+ +KRG I+V TPGR+ DML + N
Sbjct: 451 KKFSKSLA------LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTN 504
Query: 300 CR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356
R Y+ +DEADR+ D+GFE + + D+ + RQT++FSAT P ++ AR L KPV
Sbjct: 505 LRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPV 564
Query: 357 TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENKADVDDIHEYL 414
V VG DV Q V +++E K + LLE L + V+IF + + D + + L
Sbjct: 565 EVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDL 624
Query: 415 LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474
+ +++HGG DQ +R+ I+ FK G +LVAT VA++GLD + V+NY P
Sbjct: 625 MKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNH 684
Query: 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
E+YVHR GRTGR G G A TFI + Q+ + D+ L+ + +P L +L
Sbjct: 685 YEDYVHRAGRTGRAGNKGYAYTFITEGQARYSG-DILKALELSGSSVPAELEQL 737
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 150/405 (37%), Positives = 224/405 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P+VL+GRD++ A TGSG
Sbjct: 263 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSG 322
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 323 KTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-----SFG- 376
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 377 TCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRM 436
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTLLFSAT P +IQ A L + V VG+ G A
Sbjct: 437 LDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGA 496
Query: 367 NLDVIQ---EVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVA 423
DV Q +V V ++ K+V +L + P ++F E K D I +L + + +
Sbjct: 497 CRDVQQSILQVGPVFKKRKLVEILRNIGDERP--MVFVETKKKADFIATFLCQEKISTTS 554
Query: 424 VHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIG 483
+HG ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+++P+ I+ YVHRIG
Sbjct: 555 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG 614
Query: 484 RTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
RTGRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 615 RTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEI 659
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 150/405 (37%), Positives = 224/405 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q +P+VL+GRD++ A TGSG
Sbjct: 263 VSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSG 322
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG-EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q Y +F G
Sbjct: 323 KTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-----SFG- 376
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + +G +I+ ATPGRL D++ K+K+ L +YL LDEADR+
Sbjct: 377 TCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRM 436
Query: 312 VDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF +++++ K QRQTLLFSAT P +IQ A L + V VG+ G A
Sbjct: 437 LDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGA 496
Query: 367 NLDVIQ---EVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVA 423
DV Q +V V ++ K+V +L + P ++F E K D I +L + + +
Sbjct: 497 CRDVQQSILQVGPVFKKRKLVEILRNIGDERP--MVFVETKKKADFIATFLCQEKISTTS 554
Query: 424 VHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIG 483
+HG ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+++P+ I+ YVHRIG
Sbjct: 555 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG 614
Query: 484 RTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
RTGRCG TG A +F + L +L +A+Q +P L E+
Sbjct: 615 RTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEI 659
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 390 (142.3 bits), Expect = 7.1e-64, Sum P(2) = 7.1e-64
Identities = 92/225 (40%), Positives = 129/225 (57%)
Query: 331 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL-EC 389
RQT++++ATMPT ++ AR L +P V +G AG A V Q VE + E K L E
Sbjct: 555 RQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLGEI 614
Query: 390 LQKTP--PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDV 447
L PP+++F K + D I + G +V +HG K QE+RE A++S + G DV
Sbjct: 615 LSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDV 674
Query: 448 LVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTL 507
LVATD+A +G+D PD+ VIN++M IE+Y HRIGRTGR GK+G+A TF+ N+ +
Sbjct: 675 LVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLG-NEDADVM 733
Query: 508 LDLKHLLQEAK-QRIPPVL----AELNDPMEDVDA-ITNASGVKG 546
DLK +L ++ R+P L A + P I ASG G
Sbjct: 734 YDLKQMLIKSPISRVPEELRKHEAAQSKPTRGAGKKIEEASGFAG 778
Score = 327 (120.2 bits), Expect = 7.1e-64, Sum P(2) = 7.1e-64
Identities = 64/214 (29%), Positives = 118/214 (55%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
+ M ++ + ++ ++I G +P P++++ + P+ +L+ + G +PTPIQ
Sbjct: 317 LEHMRERDWRIFKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAA 376
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXV--PGEGPFCLIVCPSREL 231
+P+ + RD+IG+A TGSGKT F+L +GP+ +++ P+REL
Sbjct: 377 IPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTREL 436
Query: 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA 291
A+Q ++F P+ G+ + +GG Q ++ G I++ATPGRL D +
Sbjct: 437 AQQIEIEAKKFTEPL---GF---NVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIE 490
Query: 292 KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD 325
++ + L C Y+ +DEADR++DLGFE+ + ++ D
Sbjct: 491 RRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 524
Score = 49 (22.3 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 136 EDIPPPIKNFKDMRFPEPILKKLKAK-GIVQP--TPIQVQGL 174
ED+PPP PEP +KK K G +P TP+ V+ L
Sbjct: 43 EDLPPPP--------PEPEVKKKKVGWGTKRPATTPLSVEEL 76
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 167/522 (31%), Positives = 279/522 (53%)
Query: 24 KILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLK--RD-QPEISPTEQIVQQEKEMIE 80
K +Q K + + ++D ++K + + + L V A QL +D ++S ++++ +K E
Sbjct: 120 KAMQSKAK-TVIDDLVKKQEEYKTESKLGVAAVQLSDGKDAMKDVSGEQKLIDWDK-FRE 177
Query: 81 NLS--DRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQ-WHIIVD--- 134
N+ + K + + K Y + T MS++ D RK+ ++II D
Sbjct: 178 NILKWNEKKWAGLPPVKKNF-YIESEKTS--------SMSQEQVDNWRKENYNIICDDLK 228
Query: 135 -GED--IPPPIKNFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFT 189
GE +P P NF+D +PE +++ ++ G +PTPIQ Q P++L G D+IG+A T
Sbjct: 229 DGEKRPLPNPTCNFEDAFHCYPE-VMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQT 287
Query: 190 GSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDA 249
G+GKTL +++ GP L++ P+RELA Q ++
Sbjct: 288 GTGKTLSYLMPGFIHIDSQPVLQRA--RNGPGMLVLTPTRELALQVDAECSEY------- 338
Query: 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309
Y L+++ GG D Q++ + +G I++ATPGRL D+ + L + YL LDEAD
Sbjct: 339 SYRGLKSVCIYGGGDRDGQIKDLSKGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEAD 398
Query: 310 RLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLD 369
+++D+GFE I ++ + RQT++ SAT P ++ A+S L +P+ V VG +
Sbjct: 399 KMLDMGFEPQIMKILLDVRPDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVS 458
Query: 370 VI-QEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKGVEAVAVHG 426
+ Q + ++ K ++ + P V+IF KA D + L ++ + ++HG
Sbjct: 459 TVTQNIIVTTEDEKRSHIQAFIDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHG 518
Query: 427 GKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG 486
++Q +RE A+ SFK GK +L+ATD+AS+GLD D+ HV NYD P IE YVHR+GRTG
Sbjct: 519 NREQSDRERALKSFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTG 578
Query: 487 RCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
R G+TG++ T I +N + +L ++L+ A Q +P L +
Sbjct: 579 RAGRTGVSITLITRNDWKIAG-ELINILERANQSVPEDLVSM 619
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 150/412 (36%), Positives = 238/412 (57%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G+ +P I++F + F +++ + G +PTP+Q +P +L+ RD++ A TGSG
Sbjct: 129 VSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSG 188
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPG--EG-----PFCLIVCPSRELARQTYEVVEQFLTP 245
KT F+L P G P L++ P+RELA Q ++ +F
Sbjct: 189 KTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKF--- 245
Query: 246 MRDAGYP-DLRTLLCIGGVD-MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303
Y +++T + GG + R Q+ ++ G HI++ATPGRL D++ + + L CRYL
Sbjct: 246 ----SYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYL 301
Query: 304 TLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVKP-VTVN 359
LDEADR++D+GFE IR++ K R T +FSAT P +IQ A+ L + +
Sbjct: 302 VLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLA 361
Query: 360 VGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENKADVDDIHEYLLLK 417
VGR G+ + ++ Q + +V + K L+E L + + VL+F E K +++ +L +
Sbjct: 362 VGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQ 421
Query: 418 GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 477
+ +V++HG Q ERE + F++G+ +LVAT VA++GLD P+++HVINYD+P + +
Sbjct: 422 QIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDE 481
Query: 478 YVHRIGRTGRCGKTGIATTFIN-KNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
YVHRIGRTGRCG GIAT+F N KN+ DLK+L+ E+ Q +P L ++
Sbjct: 482 YVHRIGRTGRCGNLGIATSFFNDKNRGIGR--DLKNLIVESNQEVPEWLHQV 531
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 148/404 (36%), Positives = 232/404 (57%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
+ G D P P+ F++ F + + K + G + TP+Q +PV+ +GRD++ A TGSG
Sbjct: 157 MSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSG 216
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPGEG-PFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q + +F+ G
Sbjct: 217 KTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVY-----G- 270
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + +G +I+ ATPGRL D++ K K++L +YL LDEADR+
Sbjct: 271 TCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRM 330
Query: 312 VDLGFEDDIREVFDH----FKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF D++++ + K +RQTL+FSAT P ++Q A L + + +G A
Sbjct: 331 LDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGA 390
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q + V + +K L+E LQ T ++F + K D + +L + + + ++H
Sbjct: 391 CSDVQQNILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIH 450
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F++GK +LVAT VAS+GLD ++QHVIN+D+P IE+YVHRIGRT
Sbjct: 451 GDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRT 510
Query: 486 GRCGKTGIATTFINKNQSETTLLD-LKHLLQEAKQRIPPVLAEL 528
GRCG TG A +F + +QS+ L+ L +L EA+Q +P L E+
Sbjct: 511 GRCGNTGKAVSFFD-DQSDGHLVQSLLKVLSEAQQEVPVWLEEM 553
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 149/400 (37%), Positives = 222/400 (55%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
V G D PP I F++ + + + G + TP+Q G+P++L+GRD++ A TGSG
Sbjct: 256 VSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSG 315
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPGEG-PFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q + +F G
Sbjct: 316 KTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKF-----SFG- 369
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + + +G +I+ ATPGRL D++ K+K+ L RYL LDEADR+
Sbjct: 370 TCVRPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRM 429
Query: 312 VDLGFEDDIREVFDH----FKAQRQTLLFSATMPT-KIQNFARSALVKPVT---VNVGRA 363
+D+GF +++++ K QRQTL+FSAT P +++A L K +T V VG+
Sbjct: 430 LDMGFGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFL-KNLTICLVAVGQV 488
Query: 364 GAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAV 422
G A DV Q V V Q +K L+E L+ ++F E K D I +L + +
Sbjct: 489 GGACSDVQQTVLQVGQYSKREKLVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTT 548
Query: 423 AVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI 482
++HG ++Q ERE A+ F+ GK VLVAT VA++GLD ++QHVIN+D+P+ I+ YVHRI
Sbjct: 549 SIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 608
Query: 483 GRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522
GRTGRCG TG A +F + L +L +A+Q P
Sbjct: 609 GRTGRCGNTGKAISFFDPEPDSHLAQPLVKVLSDAQQGCP 648
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 146/422 (34%), Positives = 237/422 (56%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
I ++++ + ++ + I+ G ++ P+ F+ RFP + + LKA G PTP+Q+Q
Sbjct: 141 ISELTEEQIERVKAELGIVSVGTEVCRPVIEFQHCRFPTVLERNLKAAGYEAPTPVQMQM 200
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
+PV L+GRD+I A TGSGKT+ F+L P CLI+ P+RELA
Sbjct: 201 VPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESASPSCPA----CLILTPTRELAI 256
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q E ++ MR G P++RT L +GG+ + QL +K + IV+ TPGRL ++L +K
Sbjct: 257 QIEEQAKEL---MR--GLPNMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGRLLEILKQK 311
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
+ LD+ R + +DEAD ++ +GF+ + ++ + QTLL SAT+PT Q A
Sbjct: 312 AVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPTGTQQLAERLTH 371
Query: 354 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKT-PPPVLIFCENKADVDDI 410
PVT+ +G+ +V Q V +V++ +K L E L +K PPV++F + K D +
Sbjct: 372 DPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLYQPPVVVFVDCKLGADLL 431
Query: 411 HEYLL-LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
E + + + VA+H K Q ER + G+ DV+++T + +GLD +++ VIN+
Sbjct: 432 CEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTGILGRGLDLVNVKLVINF 491
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP+ ++ YVH+IGR GR G G A TF+N N ++ L++ ++ +PP + LN
Sbjct: 492 DMPSNMDEYVHQIGRAGRLGHRGTAITFMNNN-NKRLFLEMVKRVKPTGSILPPQI--LN 548
Query: 530 DP 531
P
Sbjct: 549 SP 550
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 148/404 (36%), Positives = 223/404 (55%)
Query: 132 IVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGS 191
I E I P+ +F D+ + +L +K +PTP+Q LP++L RD++ A TGS
Sbjct: 236 IETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGS 295
Query: 192 GKTLVF---VLXXXXXXXXXXXXXXXVPGEG----PFCLIVCPSRELARQTYEVVEQFLT 244
GKT F ++ PG P L++ P+RELA+Q ++ +F
Sbjct: 296 GKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKF-- 353
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
G P + +++ GG ++ Q+ + RG I+VAT GRL D+L + +++L +YL
Sbjct: 354 ---SYGSP-VSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLV 409
Query: 305 LDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
LDEADR++D+GFE IR++ F RQTL+FSAT P +IQN A L + + V
Sbjct: 410 LDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKV 469
Query: 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLKG 418
G G ++ Q +EYV +E K YLL+ L K+ LIF E K D + +L +
Sbjct: 470 GVVGTTQ-NITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRN 528
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
+HG Q ERE A+ SF++ LVATD+AS+GL ++ VIN+D+P +I Y
Sbjct: 529 FPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIY 588
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522
VHRIGRTGR GK G+A +F N+ +++ +L L++ + Q IP
Sbjct: 589 VHRIGRTGRAGKKGLAISFFNE-KNKPVGAELLKLMKASNQDIP 631
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 158/442 (35%), Positives = 236/442 (53%)
Query: 119 KKACDLIRKQWHIIVDGED---IPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
++ D I K++ I + E+ +P PI + + F I K +K +PTP+Q G P
Sbjct: 114 QETMDFI-KEFEISIKKENNFYLPKPIDTIESVPFQSTI-KNFLSKKFEKPTPVQSLGWP 171
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
+ LSG DM+GI+ TGSGKTL F+L PG P L+V P+RELA Q
Sbjct: 172 IALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYY-PG--PSVLVVAPTRELANQI 228
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
+ EQ+L + ++ T+ GG RSQ + R IVV TPGR+ D + +
Sbjct: 229 NQEAEQYLRLVNI----EIATIY--GGAPRRSQQLQLSRRPKIVVGTPGRIIDFMESGDL 282
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
+L N +L +DEADRL+++GFE I +F+ + RQ L +SAT P K+ +FA + P
Sbjct: 283 SLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIRTP 342
Query: 356 VTVNVGRAG-AANLDVIQEVEYVKQEA-KIVYLLECLQKT-----PPPVLIFCENKADVD 408
+ + +G + AN ++ Q+ + V +A K+ L++ L + LIF K D
Sbjct: 343 IRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGAD 402
Query: 409 DIHEYLLLKG--VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466
+ Y+ G V +HG DQ RE + FK + D++VATDVAS+GLD I HV
Sbjct: 403 TLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHV 462
Query: 467 INYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL--DLKHLLQEAKQRIPPV 524
IN+ +P++ E YVHRIGRTGR G G + + ++ N + L DL +LLQ ++Q +P
Sbjct: 463 INFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQRSEQEVPSE 522
Query: 525 LAELNDPMEDVDAITNASGVKG 546
++N AI N +KG
Sbjct: 523 FLDIN-------AIRNRQNMKG 537
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 144/393 (36%), Positives = 225/393 (57%)
Query: 133 VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG 192
+ G D P P+ F++ F + + K + G + TP+Q +PV+ +GRD++ A TGSG
Sbjct: 157 MSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSG 216
Query: 193 KTLVFVLXXXXXXXXXXXXXXXVPGEG-PFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
KT F+L + P C+IV P+REL Q + +F+ G
Sbjct: 217 KTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVY-----G- 270
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
+R ++ GG + + +G +I+ ATPGRL D++ K K++L +YL LDEADR+
Sbjct: 271 TCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRM 330
Query: 312 VDLGFEDDIREVFDH----FKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAGAA 366
+D+GF D++++ + K +RQTL+FSAT P ++Q A L + + +G A
Sbjct: 331 LDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGA 390
Query: 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVH 425
DV Q + V + +K L+E LQ T ++F + K D + +L + + + ++H
Sbjct: 391 CSDVQQNILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIH 450
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G ++Q ERE A+ F++GK +LVAT VAS+GLD ++QHVIN+D+P IE+YVHRIGRT
Sbjct: 451 GDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRT 510
Query: 486 GRCGKTGIATTFINKNQSETTLLD-LKHLLQEA 517
GRCG TG A +F + +QS+ L+ L +L EA
Sbjct: 511 GRCGNTGKAVSFFD-DQSDGHLVQSLLKVLSEA 542
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 147/422 (34%), Positives = 231/422 (54%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
I + + + +R Q I+V+G +P PI +F FPE + LK G PTPIQ+Q
Sbjct: 162 ISNLREDQIENLRGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPTPIQMQM 221
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
+PV L GRD++ A TGSGKT F+L V + P L++ P+RELA
Sbjct: 222 IPVGLLGRDLLASADTGSGKTAAFLLPVITRAL--------VQSKAPSALVLTPTRELAI 273
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q ++ + G P +RT L +GG+ QL +++ V +++ATPGRL D++ +
Sbjct: 274 QIERQAKELM-----GGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMKQS 328
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
++L N + + +DEAD ++ +GF++ + +V ++ QT+L SAT+PT+I+ A L
Sbjct: 329 SVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLASRLLH 388
Query: 354 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTP---PPVLIFCENKADVDDI 410
PV V G V Q V +V++ AK L E L PPVL+F + K D +
Sbjct: 389 DPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLL 448
Query: 411 HEYL-LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
E + + G+++ ++H K Q ER+ + G DV+V+T V +GLD ++ V+N+
Sbjct: 449 SEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLVVNF 508
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP+ ++ YVH++GR GR G+ G A TFIN N S+ D+ ++ +PP L LN
Sbjct: 509 DMPSSMDEYVHQVGRVGRLGQNGTAITFINNN-SKRLFWDIAKRVKPTGSLLPPQL--LN 565
Query: 530 DP 531
P
Sbjct: 566 SP 567
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 142/422 (33%), Positives = 232/422 (54%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
I + + + +++Q I+V G+D+ PI +F+ FPE + LK G PTPIQ+Q
Sbjct: 175 ILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQM 234
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
+PV L GRD++ A TGSGKT F+L + P LI+ P+RELA
Sbjct: 235 IPVGLLGRDVLASADTGSGKTAAFLLPVITRAL--------CESKTPSALILTPTRELAI 286
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q ++ ++ G P ++T+L +GG+ + QL +++ V +++ATPGRL D++ +
Sbjct: 287 QIENQAKELMS-----GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQS 341
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
+ L + + +DEAD ++ +GF+ + ++ +H QT+L SAT+PT I+ A L
Sbjct: 342 SVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLH 401
Query: 354 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTP---PPVLIFCENKADVDDI 410
PV + G V Q + +V++ AK L E L PPVL+F + K D +
Sbjct: 402 NPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLL 461
Query: 411 HEYLL-LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
E + + G+++V++H K Q ER+ + G +V+V+T V +GLD ++ V+N+
Sbjct: 462 SEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNF 521
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP+ ++ YVH++GR GR G+ G A TFIN N S+ D+ ++ +PP L LN
Sbjct: 522 DMPSSMDEYVHQVGRVGRLGQNGTAITFINNN-SKRLFWDIAKRVKPTGSILPPQL--LN 578
Query: 530 DP 531
P
Sbjct: 579 SP 580
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 150/412 (36%), Positives = 224/412 (54%)
Query: 123 DLIRKQ--WHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG 180
D+IR Q ++ V G P P+ +F F + +++ ++ QPTPIQ +P LSG
Sbjct: 243 DVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSG 302
Query: 181 RDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVE 240
RD++GIA TGSGKT ++ GEGP +IV P+RELA Q ++ +
Sbjct: 303 RDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKA---GEGPVAVIVVPTRELAIQVFQEAK 359
Query: 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQL-EVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299
+F Y ++ + GG Q E+ G +VV TPGR+ D++ N
Sbjct: 360 KFCKV-----Y-NINPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLR 413
Query: 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVN 359
+L DEADR+ D+GFE ++ + DH + RQ L+FSAT K++ AR ALV PV +
Sbjct: 414 TTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIV 473
Query: 360 VGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLL 416
G G AN D+ Q+V ++ Q+ K+ +L+ L + VLIF K D +D+ + L +
Sbjct: 474 QGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKM 533
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
K + V +HG Q ER + F+ K +LVATDVA++GLD +I+ VIN+DM +I+
Sbjct: 534 KDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAARGLDISEIRTVINFDMARDID 592
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
+VHRIGRTGR G G A T + + E +K+L + Q +P L +L
Sbjct: 593 THVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNL-ESVSQEVPKPLMDL 643
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 135/365 (36%), Positives = 210/365 (57%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
+ +F+ + IL L G PTPIQ Q +P+V+ GRD++G+A TG+GKTL F
Sbjct: 6 MSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFA--- 62
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
P G L++ P+RELA Q + F T AG +LR ++ G
Sbjct: 63 APILDRLSRNASPAPVRGTRVLVLAPTRELAGQ---IATSFGT--YGAGL-NLRVVMVCG 116
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
G + Q+ ++RG HI+VATPGRL D++ ++ ++LD L LDEAD+++DLGF +R
Sbjct: 117 GAKIGGQIRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALR 176
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381
+ + ++RQTL FSATMP +++ A + L P V+V + Q V +V+Q
Sbjct: 177 AIAKNVPSKRQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPE 236
Query: 382 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K L+E ++ ++F K D + + L +++VA+HG K Q +RE A+ +F
Sbjct: 237 KASLLIEKIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAF 296
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
KAG+ +LVATD+A++G+ + HVINYD+P E +VHRIGRT R G +G+A +F ++
Sbjct: 297 KAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSR 356
Query: 501 NQSET 505
++ T
Sbjct: 357 DERPT 361
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 595 (214.5 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 127/319 (39%), Positives = 192/319 (60%)
Query: 215 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR 274
V G+GP CL++ P+RELA+Q +V ++ R L++ GG Q+ ++R
Sbjct: 84 VRGDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLER 137
Query: 275 GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTL 334
GV I +ATPGRL D L K NL YL LDEADR++D+GFE IR++ D + RQTL
Sbjct: 138 GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 197
Query: 335 LFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLE-C 389
++SAT P +++ A L + +N+G +AN +++Q V+ V+++ K++ L+E
Sbjct: 198 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 257
Query: 390 LQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 449
+ + ++F E K D++ + G A+ +HG K Q+ER++ ++ FK GK +L+
Sbjct: 258 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILI 317
Query: 450 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 509
ATDVAS+GLD D++ VINYD P E+Y+HRIGRT R KTG A TF N + + D
Sbjct: 318 ATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ-VSD 376
Query: 510 LKHLLQEAKQRIPPVLAEL 528
L +L+EA Q I P L +L
Sbjct: 377 LISVLREANQAINPKLLQL 395
Score = 37 (18.1 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 EEDDYVEYVPIAKRRAMEAQKILQRK 29
E++ Y E+ +A+R A E + + K
Sbjct: 55 EKNFYQEHPDLARRTAQEVETYRRSK 80
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 153/421 (36%), Positives = 224/421 (53%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F + IL+ + +G +PTPIQ Q +P VL GRD++ A TG+GKT F L
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 204 XXXXXXXXXXXVPGEGPF-CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
G P LI+ P+RELA Q E V + + Y ++R+L+ GG
Sbjct: 62 HLITRQPHAK---GRRPVRALILTPTRELAAQIGENVRDY------SKYLNIRSLVVFGG 112
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
V + Q+ ++ GV ++VATPGRL D+ + + LD L LDEADR++D+GF DIR
Sbjct: 113 VSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRR 172
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382
V A+RQ LLFSAT I+ A L P+ + V R A+ V Q V +V ++ K
Sbjct: 173 VLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRK 232
Query: 383 IVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441
L + K VL+F K + + E L G+ + A+HG K Q R A++ FK
Sbjct: 233 RELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFK 292
Query: 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501
+G VLVATD+A++GLD ++ HV+NY++P E+YVHRIGRTGR TG A + + +
Sbjct: 293 SGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVD 352
Query: 502 QSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCP 561
+ + L D++ LL++ RI + DP + I N +G G G R + P
Sbjct: 353 EHKL-LRDIEKLLKKEIPRIA-IPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQP 410
Query: 562 K 562
+
Sbjct: 411 R 411
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 143/411 (34%), Positives = 224/411 (54%)
Query: 125 IRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184
+R+Q I V G +P PI +F+ FPE + + LKA G PTPIQ+Q +PV L GRD++
Sbjct: 186 LRRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVL 245
Query: 185 GIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244
A TGSGKT F+L + P L++ P+RELA Q ++ ++
Sbjct: 246 ASADTGSGKTAAFLLPVILRALSQS--------KSPSGLVLTPTRELAIQIERQAKELMS 297
Query: 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304
G P LRT L +GG+ Q +++ + +++ATPGRL D++ ++ + L + + +
Sbjct: 298 -----GLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATPGRLLDIIKQRSVELGSIKIVV 352
Query: 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364
+DEAD ++ +GF+ + +V + QT+L SAT+P ++ A L PV + G
Sbjct: 353 VDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATIPASVEQLACQLLRDPVAITAGERN 412
Query: 365 AANLDVIQEVEYVKQEAKIVYLLECLQKTP---PPVLIFCENKADVDDIHEYLL-LKGVE 420
V Q V +V++ AK L E L PPVL+F + K D + E + + G++
Sbjct: 413 LPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLK 472
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
+ +VH K Q ER+ + G DV+V+T V +GLD ++ V+N+DMP+ ++ YVH
Sbjct: 473 STSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVH 532
Query: 481 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531
+IGR GR G+ G A TFIN N S+ D+ ++ +PP L LN P
Sbjct: 533 QIGRVGRLGQHGTAITFINNN-SKRLFWDIAKRVKPTGSLLPPQL--LNSP 580
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 137/398 (34%), Positives = 216/398 (54%)
Query: 138 IPPPIKNFKD--MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTL 195
IP P FKD ++P+ +LK + GIV+PTPIQ Q P++L G D+I +A TG+GKTL
Sbjct: 216 IPKPTCRFKDAFQQYPD-LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTL 274
Query: 196 VFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLR 255
+++ GP L++ P+RELA ++ Y L+
Sbjct: 275 SYLMPGFIHLDSQPISREQ--RNGPGMLVLTPTRELALHVEAECSKY-------SYKGLK 325
Query: 256 TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG 315
++ GG + Q+E + +GV I++ATPGRL D+ +NL + YL +DEAD+++D+
Sbjct: 326 SICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME 385
Query: 316 FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI-QEV 374
FE IR++ + RQT++ SAT P ++ A S L P+ V VG ++ + Q +
Sbjct: 386 FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNI 445
Query: 375 EYVKQEAKIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEE 432
++ K E ++ P V++F K DD+ ++G+ A ++HG +Q +
Sbjct: 446 IVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSD 505
Query: 433 REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTG 492
+E A+ FK+G +L+ TD+ S+GLD D+ HV NYD P I+ YVHR+G GR GKTG
Sbjct: 506 QERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTG 565
Query: 493 IATTFINKNQSETTLLDLKHLLQEAKQRIPP---VLAE 527
+ T I + S+ +L +L A Q +P V+AE
Sbjct: 566 TSVTLITQRDSKMAG-ELIKILDRANQSVPEDLVVMAE 602
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 623 (224.4 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 178/584 (30%), Positives = 287/584 (49%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQ 62
+++DD V + + + ++ ++R + + E L SK + S
Sbjct: 586 DDDDDDVFHKLFVEELKKKTEEDMKRNEKDNMNESNLTDSKNKKQNKGSDASFSSSDDTD 645
Query: 63 PEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKAC 122
++S + + E+ ++ ++ K L+ V I Y + I M
Sbjct: 646 DKLSSNKSELNYEENGMKKMN--KKLLEVNH--DEIDYIPIKKNIYVQVKEITNMKDSDV 701
Query: 123 DLIRKQ-WHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGR 181
D+ RK +IIV G++ P P++ F P IL+ L+ K + IQ+Q +P ++ GR
Sbjct: 702 DMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGR 761
Query: 182 DMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQ 241
D+I IA TGSGKTL ++ +GP +I+ P+REL+ Q +
Sbjct: 762 DVIAIAETGSGKTLSYLFPVIRHVLHQEPLRN---NDGPISIILTPTRELSIQVKNEAKI 818
Query: 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK---KKMNLD 298
+ + ++ L GG ++ QL+V+K+GV I+V TPGR+ D+L K NL+
Sbjct: 819 YCKAV------NIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLN 872
Query: 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTV 358
++ LDEADRL+DLGFE I + + + +QT + SAT P IQN A+ L KP+ +
Sbjct: 873 RVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMAKKLLYKPIEI 932
Query: 359 NVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLL 416
VG G N ++ Q VE +++ K+ LL+ L + VLIF + + D ++ L
Sbjct: 933 IVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYK 992
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
+ +HGG+DQ +R++ + FK + VL+AT V ++G+D +I VINY P IE
Sbjct: 993 YDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIE 1052
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA-----KQ-RIPPVLAELND 530
+Y+HRIGRTGR G A TFI N+ T D+ +LL+ K IP L +
Sbjct: 1053 DYIHRIGRTGRSNNIGYAYTFILPNEY-TKAYDIYNLLKNNIYYLNKTIDIPQDLENMII 1111
Query: 531 PMEDVDAITNAS-GV-KGCAYCGGLGHRIRDCPKLEHQKSMAIA 572
+++I G K Y G G++ K HQ +A+A
Sbjct: 1112 EYTKINSINEKQKGKNKNLGY-KGKGYKFTPDEKSRHQIDIALA 1154
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 623 (224.4 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 178/584 (30%), Positives = 287/584 (49%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQ 62
+++DD V + + + ++ ++R + + E L SK + S
Sbjct: 586 DDDDDDVFHKLFVEELKKKTEEDMKRNEKDNMNESNLTDSKNKKQNKGSDASFSSSDDTD 645
Query: 63 PEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKAC 122
++S + + E+ ++ ++ K L+ V I Y + I M
Sbjct: 646 DKLSSNKSELNYEENGMKKMN--KKLLEVNH--DEIDYIPIKKNIYVQVKEITNMKDSDV 701
Query: 123 DLIRKQ-WHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGR 181
D+ RK +IIV G++ P P++ F P IL+ L+ K + IQ+Q +P ++ GR
Sbjct: 702 DMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGR 761
Query: 182 DMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQ 241
D+I IA TGSGKTL ++ +GP +I+ P+REL+ Q +
Sbjct: 762 DVIAIAETGSGKTLSYLFPVIRHVLHQEPLRN---NDGPISIILTPTRELSIQVKNEAKI 818
Query: 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK---KKMNLD 298
+ + ++ L GG ++ QL+V+K+GV I+V TPGR+ D+L K NL+
Sbjct: 819 YCKAV------NIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLN 872
Query: 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTV 358
++ LDEADRL+DLGFE I + + + +QT + SAT P IQN A+ L KP+ +
Sbjct: 873 RVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMAKKLLYKPIEI 932
Query: 359 NVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLL 416
VG G N ++ Q VE +++ K+ LL+ L + VLIF + + D ++ L
Sbjct: 933 IVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYK 992
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
+ +HGG+DQ +R++ + FK + VL+AT V ++G+D +I VINY P IE
Sbjct: 993 YDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIE 1052
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA-----KQ-RIPPVLAELND 530
+Y+HRIGRTGR G A TFI N+ T D+ +LL+ K IP L +
Sbjct: 1053 DYIHRIGRTGRSNNIGYAYTFILPNEY-TKAYDIYNLLKNNIYYLNKTIDIPQDLENMII 1111
Query: 531 PMEDVDAITNAS-GV-KGCAYCGGLGHRIRDCPKLEHQKSMAIA 572
+++I G K Y G G++ K HQ +A+A
Sbjct: 1112 EYTKINSINEKQKGKNKNLGY-KGKGYKFTPDEKSRHQIDIALA 1154
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 151/414 (36%), Positives = 223/414 (53%)
Query: 132 IVDGEDIPPPIKNFKDMRFPEPILKKLKAK--GIVQPTPIQVQGLPVVLSGRDMIGIAFT 189
I D P ++ F P K L A G PT IQ P++ +GRD+IGIA T
Sbjct: 60 ITDASADKPSLRPIISFSFLPPSNKDLYAPLDGFASPTAIQSATWPLLFAGRDVIGIAET 119
Query: 190 GSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDA 249
GSGKTL F L P +++ P+RELA Q Y+ + +F +
Sbjct: 120 GSGKTLAFGLPCLKKVLDLKTKQKSCR---PLAVVISPTRELAMQIYDQLVKFAEKV--- 173
Query: 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309
D++ GGV Q E +K +VVATPGRLKD+ ++L +YL LDEAD
Sbjct: 174 ---DIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEAD 229
Query: 310 RLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAA-- 366
R++D GFE DI+++ ++RQT++F+AT P ++N A + + PVTV +G +A
Sbjct: 230 RMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADP 289
Query: 367 --NLDVIQEVEYVK---QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVE 420
N + Q VE VK +E ++V +L Q+ TP VL FC K + + L KG +
Sbjct: 290 RANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFK 349
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
+HG Q+ER ++ +FK+G VLVATDVA++GLD P ++ V+N P +E+YVH
Sbjct: 350 VAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVH 409
Query: 481 RIGRTGRCGKTGIATT-FINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533
RIGRTGR G G A T F +++++ L ++L+ A Q +P L + ++
Sbjct: 410 RIGRTGRAGADGHAITLFTETDKAQSGALI--NVLKAANQEVPEALLKFGSTVK 461
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 141/359 (39%), Positives = 196/359 (54%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+FK F + + A G PTPIQ Q +P V++GRD++G+A TG+GKT F L
Sbjct: 2 DFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILH 61
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
L++ P+RELA Q + + F+T R LR++ GGV
Sbjct: 62 RLQQGERGRVRA-------LVIAPTRELAEQ---INDSFVTLGRQTR---LRSVTVYGGV 108
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
+ Q++ +K G +VVA PGRL D +A+ ++L L LDEAD++ D+GF DIR V
Sbjct: 109 GVNPQVQKLKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRV 168
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
H +RQTLLFSATMP I+ A+ LV PVTV VG A + V + V+Q K
Sbjct: 169 LKHLPPRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPA-VTVAHALYPVEQHLKT 227
Query: 384 VYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
LLE L+ T VLIF K + E L G A ++ G Q R+ A+ F+
Sbjct: 228 PLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRD 287
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501
G +LVATD+A++G+D + HVINYD+P E Y+HRIGRTGR ++G A T + +
Sbjct: 288 GTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSD 346
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 141/413 (34%), Positives = 226/413 (54%)
Query: 123 DLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRD 182
+ +++Q I V G+D+ PI +F+ FPE + + LK G PTPIQ+Q +PV L GRD
Sbjct: 183 ETLKQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRD 242
Query: 183 MIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQF 242
++ A TGSGKT F+L P LI+ P+RELA Q ++
Sbjct: 243 ILASADTGSGKTAAFLLPVIIRAFSEDKT--------PSALILTPTRELAIQIERQAKEL 294
Query: 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302
++ G P ++T+L +GG+ + QL +++ V +++ATPGRL D++ + ++L +
Sbjct: 295 MS-----GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVSLSGIKI 349
Query: 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362
+ +DEAD ++ +GF+ + +V +H QT+L SAT+P I+ L PV + G
Sbjct: 350 VVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQLLHNPVRIITGD 409
Query: 363 AGAANLDVIQEVEYVKQEAKIVYLLECL--QKT-PPPVLIFCENKADVDDIHEYLL-LKG 418
V Q + +V+ AK L E L QK PPVL+F + K D + E + + G
Sbjct: 410 KNLPCASVRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITG 469
Query: 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478
+ + ++H K Q ER + G +V+V+T V +GLD +++ V+N+DMP+ ++ Y
Sbjct: 470 LNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEY 529
Query: 479 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531
VH++GR GR G+ G A TFIN N S+ D+ ++ +PP L LN P
Sbjct: 530 VHQVGRVGRLGQNGTAITFINNN-SKRLFWDVAKRVKPTGSILPPQL--LNSP 579
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 148/467 (31%), Positives = 248/467 (53%)
Query: 76 KEMIENLSDRKTLMSVRELAKGITYTDPLLTG----WKPPLPIRRMSKKACDLIRKQWHI 131
K +++ + +++ + LAKG + + L +K I + + + ++ Q I
Sbjct: 139 KHLLQ-MQEKEEKLKSAHLAKGESQEESHLLNTAYFYKDHSFILSLQDEQVENLKLQLGI 197
Query: 132 IVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGS 191
+ G+ +P PI F+ FPE + LK G PTPIQ+Q +PV L GRD++ A TGS
Sbjct: 198 AIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGS 257
Query: 192 GKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
GKT F+L E P LI+ P+RELA Q ++ + AG
Sbjct: 258 GKTAAFLLPVIMKVLNET--------ETPSALILAPTRELAIQIERQAKELM-----AGL 304
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
P++RT+L +GG+ + QL +K+ V +++ATPGRL ++L + + L + + +DE D +
Sbjct: 305 PNMRTVLLVGGLPLPPQLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTM 364
Query: 312 VDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI 371
+ +GF+ + ++ + QT+L SAT+P I++ A L V + +G +V
Sbjct: 365 LKMGFQQQVLDILEDISHDHQTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVR 424
Query: 372 QEVEYVKQEAKIVYLLECLQKTP---PPVLIF--CENKADV--DDIHEYLLLKGVEAVAV 424
Q + +V++ +K L E L PPVL+F C+ AD+ D +H+ + G++ ++
Sbjct: 425 QIILWVEEPSKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSDAVHK---ITGLQCTSM 481
Query: 425 HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGR 484
H K Q ER + K +V+V+T V +GLD +++ V+N+DMP+ ++ YVH++GR
Sbjct: 482 HSEKSQVERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGR 541
Query: 485 TGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531
GR G +G A TFIN N S+ D+ ++ +PP L LN P
Sbjct: 542 AGRLGHSGTAITFINNN-SKKLFWDVVKRVKPTGTILPPQL--LNSP 585
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 143/392 (36%), Positives = 214/392 (54%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
++ FK + P+LK + G PTPIQ + +P++L G +++G A TG+GKT ++L
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
G+ LIV P+RELA Q + V + Y +R L G
Sbjct: 61 LQRIQR---------GKKAQVLIVTPTRELALQVADEVAKL------GKYLKVRALAVYG 105
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
G + Q+ +++GV ++V TPGR+ D + +K + + LDEAD ++D+GF DDI
Sbjct: 106 GQAIERQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIE 165
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVN-VGRAGAANLDVIQEVEYVKQE 380
+ + ++QTLLFSAT+P I+ + L TV VGR + I++V Y E
Sbjct: 166 AILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGRE--KTVPAIRQVYYELPE 223
Query: 381 A-KIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438
KI L+ L + P ++FC K VD++ E L +G A +HG Q ER I
Sbjct: 224 TEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIK 283
Query: 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498
SFKAGK ++LVATDVA++GLD PD+ HVIN+D+P E+Y+HRIGRTGR G+ G A T I
Sbjct: 284 SFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLI 343
Query: 499 NKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
N + + + + + K+ I P +L +
Sbjct: 344 NYRERKLLKAIEEAINKRLKREILPEPVDLEE 375
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 143/392 (36%), Positives = 214/392 (54%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
++ FK + P+LK + G PTPIQ + +P++L G +++G A TG+GKT ++L
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
G+ LIV P+RELA Q + V + Y +R L G
Sbjct: 61 LQRIQR---------GKKAQVLIVTPTRELALQVADEVAKL------GKYLKVRALAVYG 105
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
G + Q+ +++GV ++V TPGR+ D + +K + + LDEAD ++D+GF DDI
Sbjct: 106 GQAIERQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIE 165
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVN-VGRAGAANLDVIQEVEYVKQE 380
+ + ++QTLLFSAT+P I+ + L TV VGR + I++V Y E
Sbjct: 166 AILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGRE--KTVPAIRQVYYELPE 223
Query: 381 A-KIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438
KI L+ L + P ++FC K VD++ E L +G A +HG Q ER I
Sbjct: 224 TEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIK 283
Query: 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498
SFKAGK ++LVATDVA++GLD PD+ HVIN+D+P E+Y+HRIGRTGR G+ G A T I
Sbjct: 284 SFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLI 343
Query: 499 NKNQSETTLLDLKHLLQEAKQRIPPVLAELND 530
N + + + + + K+ I P +L +
Sbjct: 344 NYRERKLLKAIEEAINKRLKREILPEPVDLEE 375
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 493 (178.6 bits), Expect = 7.6e-59, Sum P(2) = 7.6e-59
Identities = 113/316 (35%), Positives = 180/316 (56%)
Query: 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVAT 282
LI+ P+REL Q + ++ F + P ++++ GGV Q+ +K+G I+VAT
Sbjct: 431 LILLPTRELCLQVLDEIKSF-----EKNLP-IKSVAVYGGVPKYYQINNLKKGADIIVAT 484
Query: 283 PGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342
PGRL D L +NL C Y+ +DEADRL+D+GFE +R++ +Q L +AT P
Sbjct: 485 PGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPE 544
Query: 343 KIQNFARS-ALVKPVTVNVGRAG-AANLDVIQEV---EYVKQEAKIV-YLLECLQKTPPP 396
+++ A PV + +G+ AN ++ Q V + + K++ +L E +
Sbjct: 545 QVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNK-- 602
Query: 397 VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456
+LIFC+ K + D++ + L A+++HG K Q ER+ ++++K + ++LVATDVAS+
Sbjct: 603 ILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASR 662
Query: 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN----QSETTLLDLKH 512
GLD +I VINYD+P IE+Y+HRIGRTGR GK G + F + + Q +L
Sbjct: 663 GLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIK 722
Query: 513 LLQEAKQRIPPVLAEL 528
LL + Q +PP L E+
Sbjct: 723 LLNKTNQTVPPQLKEI 738
Score = 135 (52.6 bits), Expect = 7.6e-59, Sum P(2) = 7.6e-59
Identities = 37/84 (44%), Positives = 50/84 (59%)
Query: 117 MSKKACDLIRKQWHIIVDGEDIPPPIKN-FKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
+SK+ K+ +I ++ + I I N F D+ F E IL L K +PT IQ P
Sbjct: 261 LSKEDIQNELKKNNIYINKDGIIHNIINKFSDVCFHESILNYLNNK-FSEPTAIQKITWP 319
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVL 199
+ LSG+D+IG+A TGSGKTL FVL
Sbjct: 320 IALSGKDLIGVAETGSGKTLAFVL 343
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 138/379 (36%), Positives = 213/379 (56%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+ F IL+ + G + TPIQ Q +P + G+D++ A TG+GKT F L
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
LI+ P+RELA Q E VE + + Y + L GGV
Sbjct: 63 MVENPSETLK---SNTRVLILTPTRELAAQVAENVEAY------SKYLNFSVLTIYGGVK 113
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ +Q + +KRG I+VATPGRL + L ++L + +L LDEADR++D+GF DI+++
Sbjct: 114 VETQAQKLKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
+RQ LLFSAT + ++ A ++KP ++ + D + +V Y V+Q K
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTT-ADTVSQVVYPVEQRRKR 232
Query: 384 VYLLECL-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L E + +K VL+F + D + + L L G+ + VHG K Q R A+ F +
Sbjct: 233 ELLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVS 292
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
GK VLVAT+VA++GLD P +++V+N+D+P E+YVHRIGRTGR GK+G+A +F+++ +
Sbjct: 293 GKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREE 352
Query: 503 SETTLLDLKHLLQEAKQRI 521
E TL D++ L+ + +RI
Sbjct: 353 -ERTLADIEKLIGQKIRRI 370
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 567 (204.7 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 138/396 (34%), Positives = 214/396 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+D ++K + G + TPIQ Q +P+ LS +D+IG A TG+GKT F +
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 205 XXXXXXXXXXVPGEGPF--CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
+ E P +++ P+RELA Q E + + R + L GG
Sbjct: 65 ----------INPESPNIQAIVIAPTRELAIQVSEELYKIGQDKR------AKVLPIYGG 108
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
D+ Q+ +K+ +I+V TPGRL D + ++ + L+N + +DEAD ++++GF DDI
Sbjct: 109 QDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIES 168
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEA 381
+ + ++ QTLLFSATMP I+ A + +P V V +A + IQ+ V++
Sbjct: 169 ILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKV-KAKEMTVSNIQQFYLEVQERK 227
Query: 382 KIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K L L ++P ++F K VD++ E L L+G A +HG Q +R A+ F
Sbjct: 228 KFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKF 287
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
K G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GKTG+A TFI
Sbjct: 288 KEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP 347
Query: 501 NQSETTLLDLKHLLQEAKQRIP-PVLAELNDPMEDV 535
+ ++ L ++ + R+ P L E + + V
Sbjct: 348 RE-KSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQV 382
Score = 51 (23.0 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 27/91 (29%), Positives = 40/91 (43%)
Query: 500 KNQSETTLLDLKHLLQEAKQRI-PPVLAELNDPMEDVDAITN-ASGVK-GCAYCGGLGHR 556
+ Q + T+ L+ + E AEL +ED DA+T A+ +K R
Sbjct: 377 EGQQQVTVERLRTTISENNLNFYMTAAAEL---LEDHDAVTVVAAAIKMATKEPDDTPVR 433
Query: 557 IRD-CPKLEHQKSMAIASSRRDYFGSGGYRG 586
+ D P + + +S RRD G GGYRG
Sbjct: 434 LTDEAPMVSKRYKNQRSSKRRDGQG-GGYRG 463
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 369 (135.0 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 87/281 (30%), Positives = 143/281 (50%)
Query: 53 VKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPL 112
+ Q KR+Q ++++ + + E + L +R+ + D W
Sbjct: 307 IDLKQQKREQSRFYG--DLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDD---RHWSQK- 360
Query: 113 PIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQ 172
+ M+ + + R+ + I G IP PI+++KD P IL+ + G +PTPIQ Q
Sbjct: 361 KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ 420
Query: 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGE-GPFCLIVCPSREL 231
+P+ L RD+IG+A TGSGKT F++ + GP+ +I+ P+REL
Sbjct: 421 AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA 291
A+Q E +F P+ +R + IGG+ Q ++ G IV+ATPGRL D+L
Sbjct: 481 AQQIEEETIKFGKPL------GIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLE 534
Query: 292 KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 332
+ + L C Y+ LDEADR++D+GFE D++++ +H Q
Sbjct: 535 NRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 302 (111.4 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 57/106 (53%), Positives = 75/106 (70%)
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
A +HGGK QE+RE+A+S+ KAG KD+LVATDVA +G+D D+ V+NYDM IE+Y+H
Sbjct: 672 ACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIH 731
Query: 481 RIGRTGRCGKTGIATTFINKNQSETTLLDLKH-LLQEAKQRIPPVL 525
RIGRTGR GK+G+A TF+ K S +LK +L+ IPP L
Sbjct: 732 RIGRTGRAGKSGVAITFLTKEDS-AVFYELKQAILESPVSAIPPAL 776
Score = 79 (32.9 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 29 KGQASTLEDELEKSKL---AEVKPSLLVKASQ----LKRDQPEISPTEQIVQQEKEMIEN 81
K Q +LE+ L K K AE KP L KA + LKR Q E+ ++++++E++ +
Sbjct: 138 KAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197
Query: 82 LSD--RKTLMSVRE 93
D RK L +E
Sbjct: 198 FQDLGRKMLEDPQE 211
Score = 49 (22.3 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 5 EDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPE 64
ED ++Y P+ K R + Q +L R G + ++ + +K + + L+ K L+ + E
Sbjct: 280 EDTSIDYNPLYKERH-QVQ-LLGR-GFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQE 336
Query: 65 ISPTEQIVQQEKEMIENLSDR----KTLMSVRELAKGITYTDPLLT--GWKPPLPIR 115
+ ++ ++KE + DR K L + + I D +T G K P PIR
Sbjct: 337 EARLRKL--RKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIR 391
Score = 40 (19.1 bits), Expect = 6.2e-31, Sum P(2) = 6.2e-31
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 344 IQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVY-LLECLQKTP----PPVL 398
+ N+ + ++ +GR G A + K+++ + Y L + + ++P PP L
Sbjct: 717 VVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPAL 776
Score = 37 (18.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 281 ATPGRLKDMLAKKK 294
A P L+++LAKKK
Sbjct: 139 AQPLSLEELLAKKK 152
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 139/422 (32%), Positives = 230/422 (54%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
I + + + +++Q I+V G+++ PI +F+ PE + LK G PTPIQ+Q
Sbjct: 174 ILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQM 233
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
+PV L GRD++ A TGSGKT F+L P LI+ P+RELA
Sbjct: 234 IPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT--------PSALILTPTRELAI 285
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q ++ ++ G P ++T+L +GG+ + QL +++ V +++ATPGRL D++ +
Sbjct: 286 QIERQAKELMS-----GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQS 340
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
+ L + + +DEAD ++ +GF+ + ++ ++ QT+L SAT+PT I+ A L
Sbjct: 341 SVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLH 400
Query: 354 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTP---PPVLIFCENKADVDDI 410
PV + G +V Q + +V+ AK L E L PPVL+F + K D +
Sbjct: 401 NPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLL 460
Query: 411 HEYLL-LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
E + + G++++++H K Q ER+ + G +V+V+T V +GLD ++ V+N+
Sbjct: 461 SEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNF 520
Query: 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529
DMP+ ++ YVH+IGR GR G+ G A TFIN N S+ D+ ++ +PP L LN
Sbjct: 521 DMPSSMDEYVHQIGRVGRLGQNGTAITFINNN-SKRLFWDIAKRVKPTGSILPPQL--LN 577
Query: 530 DP 531
P
Sbjct: 578 SP 579
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 141/407 (34%), Positives = 226/407 (55%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVL-XXX 202
+F ++ PIL + G +PT IQ + +PVVL+G+D+I A TG+GKT FVL
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 203 XXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
+ + LI+ P+RELA Q + Q+ A Y D+ ++ GG
Sbjct: 62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQY------AKYLDISSMAMYGG 115
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
VD + Q + + GV I+VATPGRL DM ++ ++ D L LDEADR++D+GF DDI +
Sbjct: 116 VDAQEQKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINK 175
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382
+ + RQ LLFSATM +++ A+ + KPV +++G A+ + Q + V + K
Sbjct: 176 IIERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANK 235
Query: 383 IVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441
L + + LIF E K + L +G+ A ++H G+ Q+ RE ++ FK
Sbjct: 236 SALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFK 295
Query: 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK- 500
+GK LVAT +A++GLD ++ VINYD+PA++++Y+HRIGRTGR G +G A + ++K
Sbjct: 296 SGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKD 355
Query: 501 NQSETTLLD--LKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVK 545
N E ++ L H+++ + PV + P+ ++ +T + K
Sbjct: 356 NFRELCAIESRLGHIIERKEFEEFPVKKTV--PLSKLNYVTKYAASK 400
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 147/406 (36%), Positives = 211/406 (51%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F D E ILK + G PTPIQ + +P +L G D+ G+A TG+GKT FVL
Sbjct: 6 FADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQR 65
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
P CLI+CP+RELA Q E E++ Y L L IGGV
Sbjct: 66 LSTGRARARM-----PRCLILCPTRELAAQVAENFEKY------GKYLKLTMALLIGGVS 114
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q +++RGV +++ATPGRL D + K+ + L +DEADR++D+GF DI ++
Sbjct: 115 FKEQETLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKIC 174
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ---EA 381
A RQTLLFSAT PT IQ A++ P + V R + Q V + +A
Sbjct: 175 AKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKA 234
Query: 382 KIVYLLECLQKTPPPV-LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
+ L ++ T ++FC K +VD + L G +A +HG Q R + F
Sbjct: 235 RRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRF 294
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
+ GK +LVA+DVA++GLD PD+ HV N+ P + E+YVHRIGRTGR G+TG + T +
Sbjct: 295 RDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTP 354
Query: 501 NQSETTLLDLKHLLQEAKQRIPP-VLAELND--PMEDVDAITNASG 543
++ +K + ++ + +P +L EL P E D T G
Sbjct: 355 ADDKSWGFVVKMIKKDVPEFMPEGLLEELETLPPEEKRDRKTGGRG 400
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 412 (150.1 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 85/194 (43%), Positives = 128/194 (65%)
Query: 330 QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 389
+RQT++FSAT +IQ A+ L K + VG+ G+ N + Q + +V++E K YLL
Sbjct: 580 KRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCNYLLNL 639
Query: 390 LQKTPPPV-LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448
L + + ++F E K D I +L + + AV +HG K Q+ERE A+ FK G K++L
Sbjct: 640 LAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKNIL 699
Query: 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 508
VATDVA++GLD +I+HVIN+D+P+ I++Y+HRIGRTGR G GIAT+F+N++ ++
Sbjct: 700 VATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNED-NKNIFK 758
Query: 509 DLKHLLQEAKQRIP 522
DL L+E Q+IP
Sbjct: 759 DLLATLEECNQQIP 772
Score = 240 (89.5 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 64/201 (31%), Positives = 104/201 (51%)
Query: 142 IKNFKD--MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVL 199
I+ F D + E +L +K + TPIQ L ++++ D+IG+A TGSGKT ++L
Sbjct: 359 IETFDDPSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLL 418
Query: 200 XXXXXXXXXXXXXXXVPGEG-------------PFCLIVCPSRELARQTYEVVEQFLTPM 246
+ P CLI+ P+RELA Q + ++F
Sbjct: 419 PIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCF-- 476
Query: 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306
+ G ++ ++ GG ++++QL + +G I+VATPGRL D+L K K+ L +L LD
Sbjct: 477 -ETG---IKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLD 532
Query: 307 EADRLVDLGFEDDIREVFDHF 327
EADR++D+GF IR + + +
Sbjct: 533 EADRMLDMGFSPQIRSIVNDY 553
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 412 (150.1 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 85/194 (43%), Positives = 128/194 (65%)
Query: 330 QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 389
+RQT++FSAT +IQ A+ L K + VG+ G+ N + Q + +V++E K YLL
Sbjct: 580 KRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCNYLLNL 639
Query: 390 LQKTPPPV-LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448
L + + ++F E K D I +L + + AV +HG K Q+ERE A+ FK G K++L
Sbjct: 640 LAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKNIL 699
Query: 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 508
VATDVA++GLD +I+HVIN+D+P+ I++Y+HRIGRTGR G GIAT+F+N++ ++
Sbjct: 700 VATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNED-NKNIFK 758
Query: 509 DLKHLLQEAKQRIP 522
DL L+E Q+IP
Sbjct: 759 DLLATLEECNQQIP 772
Score = 240 (89.5 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 64/201 (31%), Positives = 104/201 (51%)
Query: 142 IKNFKD--MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVL 199
I+ F D + E +L +K + TPIQ L ++++ D+IG+A TGSGKT ++L
Sbjct: 359 IETFDDPSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLL 418
Query: 200 XXXXXXXXXXXXXXXVPGEG-------------PFCLIVCPSRELARQTYEVVEQFLTPM 246
+ P CLI+ P+RELA Q + ++F
Sbjct: 419 PIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCF-- 476
Query: 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306
+ G ++ ++ GG ++++QL + +G I+VATPGRL D+L K K+ L +L LD
Sbjct: 477 -ETG---IKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLD 532
Query: 307 EADRLVDLGFEDDIREVFDHF 327
EADR++D+GF IR + + +
Sbjct: 533 EADRMLDMGFSPQIRSIVNDY 553
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 141/408 (34%), Positives = 216/408 (52%)
Query: 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLX 200
P K+F D P+ + + ++ G + TPIQ LP+V G+D++ A TGSGKT F+L
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
Query: 201 XXXXXXXXXXXXXXVPGEG-PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259
G P C+I+ P+RELA Q Y +F Y + +
Sbjct: 356 IMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKF-------SYQSVMEIKP 408
Query: 260 I-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFE 317
+ GG+++ + +G I+V T GR+K + LD CRYL LDEADR++D +GF
Sbjct: 409 VYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFG 468
Query: 318 DDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVT-VNVGRAGAANLDVIQ 372
+I ++ ++ +RQT++FSAT P+ +Q AR L + T + + + GAAN VIQ
Sbjct: 469 PEIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQ 528
Query: 373 EVEYVKQEAKIVYLLECL---------QKTPP----PVLIFCENKADVDDIHEYLLLKGV 419
E E + +K+ LL+ L +K ++F + D + + V
Sbjct: 529 EFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQV 588
Query: 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 479
A+ +HG ++Q+ER A+ F++G K VL+AT V +GLD + HVINYDMP I++Y+
Sbjct: 589 PAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYI 648
Query: 480 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
HRIGRTGR G +G AT+FI+ L L L +A+Q +P + E
Sbjct: 649 HRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKE 696
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 141/408 (34%), Positives = 216/408 (52%)
Query: 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLX 200
P K+F D P+ + + ++ G + TPIQ LP+V G+D++ A TGSGKT F+L
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
Query: 201 XXXXXXXXXXXXXXVPGEG-PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259
G P C+I+ P+RELA Q Y +F Y + +
Sbjct: 356 IMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKF-------SYQSVMEIKP 408
Query: 260 I-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFE 317
+ GG+++ + +G I+V T GR+K + LD CRYL LDEADR++D +GF
Sbjct: 409 VYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFG 468
Query: 318 DDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVT-VNVGRAGAANLDVIQ 372
+I ++ ++ +RQT++FSAT P+ +Q AR L + T + + + GAAN VIQ
Sbjct: 469 PEIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQ 528
Query: 373 EVEYVKQEAKIVYLLECL---------QKTPP----PVLIFCENKADVDDIHEYLLLKGV 419
E E + +K+ LL+ L +K ++F + D + + V
Sbjct: 529 EFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQV 588
Query: 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 479
A+ +HG ++Q+ER A+ F++G K VL+AT V +GLD + HVINYDMP I++Y+
Sbjct: 589 PAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYI 648
Query: 480 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527
HRIGRTGR G +G AT+FI+ L L L +A+Q +P + E
Sbjct: 649 HRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKE 696
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 140/381 (36%), Positives = 208/381 (54%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
+KNF ++ E L+ GI + TPIQ + +PV+LSG+D+IG A TG+GKTL FVL
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
LIV P+RELA Q +++ L R+ D+ L G
Sbjct: 64 LEKIDPESSDVQA--------LIVAPTRELALQITTEIKKMLV-QRE----DINVLAIYG 110
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
G D+ QL +K HIVVATPGRL D + ++ ++L N + LDEAD+++ GF DI
Sbjct: 111 GQDVAQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIE 170
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI-QEVEYVKQE 380
++ D +QT+LFSAT+P I+ A+ + +P + V ++ +D I Q V
Sbjct: 171 DILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQV-QSEEVTVDTIEQRVIETTDR 229
Query: 381 AKIVYLLECLQKTPPPV-LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISS 439
AK L + + P + +IFC K +++ L G +HG Q +RE + S
Sbjct: 230 AKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKS 289
Query: 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499
F+ K L+ATDVA++GLD + HV NYD+P ++E+Y+HRIGRTGR G +G+A TF+
Sbjct: 290 FREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVA 349
Query: 500 KNQSETTLLDLKHLLQEAKQR 520
+ E L +++ L QR
Sbjct: 350 A-KDEKHLEEIEKTLGAPIQR 369
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 140/381 (36%), Positives = 208/381 (54%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
+KNF ++ E L+ GI + TPIQ + +PV+LSG+D+IG A TG+GKTL FVL
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
LIV P+RELA Q +++ L R+ D+ L G
Sbjct: 64 LEKIDPESSDVQA--------LIVAPTRELALQITTEIKKMLV-QRE----DINVLAIYG 110
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
G D+ QL +K HIVVATPGRL D + ++ ++L N + LDEAD+++ GF DI
Sbjct: 111 GQDVAQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIE 170
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI-QEVEYVKQE 380
++ D +QT+LFSAT+P I+ A+ + +P + V ++ +D I Q V
Sbjct: 171 DILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQV-QSEEVTVDTIEQRVIETTDR 229
Query: 381 AKIVYLLECLQKTPPPV-LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISS 439
AK L + + P + +IFC K +++ L G +HG Q +RE + S
Sbjct: 230 AKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKS 289
Query: 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499
F+ K L+ATDVA++GLD + HV NYD+P ++E+Y+HRIGRTGR G +G+A TF+
Sbjct: 290 FREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVA 349
Query: 500 KNQSETTLLDLKHLLQEAKQR 520
+ E L +++ L QR
Sbjct: 350 A-KDEKHLEEIEKTLGAPIQR 369
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 132/362 (36%), Positives = 203/362 (56%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
+ FK E I+ ++ KG QPTPIQ + +P +++G D++GIA TG+GKT F L
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI 60
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
+ + LI+ P+RELA Q + ++ + + L+T + G
Sbjct: 61 INKFGRNKID---IKAKSTRSLILTPTRELASQIMQNIDDYSDGL------GLKTKVVYG 111
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
GV ++Q++ ++ G+ I+VATPGRL D++ +N LDEAD ++D+GF D++
Sbjct: 112 GVGRQAQVDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQ 171
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI-QEVEYVKQE 380
+ RQTLLFSATMP +I+ A + L P + + A +D++ Q V ++ +
Sbjct: 172 SIISKLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQI-TAETVTIDLVNQSVYHLDKS 230
Query: 381 AKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISS 439
K+ L L K VLIFC+ K D I + L + A ++H GK Q RE A+ +
Sbjct: 231 NKVPLLFNILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQN 290
Query: 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499
FK VLVATDVA++G+D +I VINY++P + NY+HRIGRT R GK+G+A +F
Sbjct: 291 FKDSTLRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAV 350
Query: 500 KN 501
+N
Sbjct: 351 EN 352
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 136/399 (34%), Positives = 216/399 (54%)
Query: 138 IPPPIKNFKD-MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 196
IPPP+ +F+ I+ +++ G +P+PIQ Q P++LSG+D IG++ TGSGKTL
Sbjct: 78 IPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLA 137
Query: 197 FVLXXXXXXXXXXXXXXXVPGE---GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD 253
F+L E PF L++ P+RELA+Q V+++ Y
Sbjct: 138 FLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKY-------SYNG 190
Query: 254 LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313
+++ GG Q+E + GV IV+ATPGRL D+ ++L + Y+ LDEADR++D
Sbjct: 191 YKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLD 250
Query: 314 LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL-DVIQ 372
+GFE IR + + R L SAT P ++ + V G + V Q
Sbjct: 251 MGFEVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQ 310
Query: 373 EVEYVKQEAK------IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHG 426
E+V +++ IV L ++IF ++K D + +KG+ + +HG
Sbjct: 311 FFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHG 370
Query: 427 GKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG 486
G+ Q +RE +++ ++G+ +LVATD+AS+G+D PDI HV+NYD P +IE YVHR+GRTG
Sbjct: 371 GRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTG 430
Query: 487 RCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
R G+ G A +F+ N + L +L++++Q +P L
Sbjct: 431 RAGRKGEAMSFLWWND-RSNFEGLIQILEKSEQEVPDQL 468
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 141/387 (36%), Positives = 203/387 (52%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F ++ +LK ++ G PTPIQ +P L GRD++GIA TG+GKT F L
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
P L++CP+RELA Q V E F T + + L L IGGV
Sbjct: 64 LARGRARARM-----PRSLVLCPTRELAAQ---VAENFDTYTK---HLKLTKALLIGGVS 112
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q ++ RGV +++ATPGRL D + K+ L + + +DEADR++D+GF DI +F
Sbjct: 113 FKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIF 172
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK------ 378
RQTL FSATM +I+ + L P + V R A+ + Q V K
Sbjct: 173 SLTPFTRQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDR 232
Query: 379 --QEAKIVY--LLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEERE 434
E + V L++ + +IFC K DVD + + L G +A +HG DQ +R
Sbjct: 233 EASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRT 292
Query: 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA 494
+ F+ GK +LVA+DVA++GLD P + HV N+D+P E+YVHRIGRTGR G+ G A
Sbjct: 293 RTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKA 352
Query: 495 TTFINKNQSETTLLDLKHLLQEAKQRI 521
T + E L ++ L+Q+ R+
Sbjct: 353 ITLCIP-RDEKALDAIEKLIQKDIPRL 378
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 558 (201.5 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 131/364 (35%), Positives = 187/364 (51%)
Query: 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVL 199
P F + PE +L + + G T IQ +P +L+G+D++G A TG+GKT F L
Sbjct: 12 PEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGL 71
Query: 200 XXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259
+ P +++ P+RELA Q E +E F M+ LR
Sbjct: 72 PALAKIDTSI--------KKPQLMVLAPTRELAMQVAEAIESFGKDMKG-----LRVATL 118
Query: 260 IGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319
GG Q + ++RG +VV TPGRL D L +K + LD R LDEAD ++++GF +D
Sbjct: 119 YGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLED 178
Query: 320 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379
I+ + DH Q LFSATMP I+ A L P + V A ++ Q V
Sbjct: 179 IQWILDHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSG 238
Query: 380 EAKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438
K+ L + ++IF + D DI E L G A+A++G +Q +RE I
Sbjct: 239 ITKMTALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCID 298
Query: 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498
K+GK +LVATDV ++GLD P I VINYD+P + E YVHRIGRTGR G+ G++ F+
Sbjct: 299 QMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFV 358
Query: 499 NKNQ 502
+
Sbjct: 359 RPRE 362
Score = 39 (18.8 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 502 QSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDA 537
+SE +++DL L KQ P L DP DA
Sbjct: 422 ESEVSMIDLAAALLFQKQMKQP-LQPKEDPKPRRDA 456
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 142/412 (34%), Positives = 225/412 (54%)
Query: 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 194
GE+ P P K+FK++ + + + + G PTPIQ Q +P+ L GRD+IG+A TGSGKT
Sbjct: 39 GEE-PAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKT 97
Query: 195 LVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDL 254
F L P + F L++ P+RELA Y++ + F T G +
Sbjct: 98 AAFALPMLQALMEA-------P-QTLFGLVLAPTRELA---YQISQAFETLGSTIG---V 143
Query: 255 RTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVD 313
R + +GG+DM +Q + + HI+VATPGRL D L K +L N +YL +DEADRL+D
Sbjct: 144 RCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLD 203
Query: 314 LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE 373
+ F + + ++ R T LFSATM TK+++ R++L PV V+V + + +Q
Sbjct: 204 MDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVS-SKYQTVSTLQS 262
Query: 374 VEYV--KQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQ 430
Y+ + K +YL+ L + +IF + + L G A+ +HG Q
Sbjct: 263 -SYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQ 321
Query: 431 EEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 490
R A+ F++ +D+LVATDVA++GLD P + V N+D+P + + Y+HR+GRT R GK
Sbjct: 322 SARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGK 381
Query: 491 TGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNAS 542
+G+A +F+ + E L ++H L + ++P E ++ M + + AS
Sbjct: 382 SGVAISFVTQYDVEVWLR-IEHALSK---KLPEYQVEKDEVMVMSERVAEAS 429
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 129/361 (35%), Positives = 193/361 (53%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F D+ IL L G V PTPIQ +PV+L GRD +G A TG+GKT F L
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
P +++ P+RELA Q ++ ++ L+ L GG
Sbjct: 88 LNLSQYK--------PQAIVMAPTRELAIQVAAEIKNLGQNIKG-----LKVLEIYGGAS 134
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K G HIVV TPGR+KD++ + +++LD C LDEAD ++ +GF DD+ +
Sbjct: 135 ILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIM 194
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE---VEYVKQEA 381
+ Q +LFSATMP ++ L P V+V + V Q+ V+ V+++
Sbjct: 195 EQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDE 254
Query: 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441
+ LLE ++T + +F + D + + ++L +G +A A+HG Q RE + K
Sbjct: 255 AMARLLET-EETDASI-VFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501
G D+LVATDV ++GLD P I HV NYD+P ++E+Y+HRIGRTGR G+ G A + N
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 502 Q 502
Q
Sbjct: 373 Q 373
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 129/361 (35%), Positives = 193/361 (53%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F D+ IL L G V PTPIQ +PV+L GRD +G A TG+GKT F L
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
P +++ P+RELA Q ++ ++ L+ L GG
Sbjct: 88 LNLSQYK--------PQAIVMAPTRELAIQVAAEIKNLGQNIKG-----LKVLEIYGGAS 134
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K G HIVV TPGR+KD++ + +++LD C LDEAD ++ +GF DD+ +
Sbjct: 135 ILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIM 194
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE---VEYVKQEA 381
+ Q +LFSATMP ++ L P V+V + V Q+ V+ V+++
Sbjct: 195 EQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDE 254
Query: 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441
+ LLE ++T + +F + D + + ++L +G +A A+HG Q RE + K
Sbjct: 255 AMARLLET-EETDASI-VFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501
G D+LVATDV ++GLD P I HV NYD+P ++E+Y+HRIGRTGR G+ G A + N
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 502 Q 502
Q
Sbjct: 373 Q 373
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 142/400 (35%), Positives = 215/400 (53%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+D + + K +K G + TPIQ Q +P+ L+ +D+IG A TG+GKT F +
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 205 XXXXXXXXXXVPGEGPF--CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
+ E P +++ P+RELA Q E + + R R L GG
Sbjct: 65 ----------INPESPNIQAIVIAPTRELAIQVSEELYKIGQDKR------ARVLPIYGG 108
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
D+ Q+ +K+ HI+V TPGRL D + ++ M L + LDEAD ++++GF +DI
Sbjct: 109 QDIGRQIRALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIES 168
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEA 381
+ + A+ QTLLFSATMP I+ A + P V V +A + IQ+ V +
Sbjct: 169 ILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKV-KAKEMTVSNIQQFYLEVHERK 227
Query: 382 KIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K L L ++P ++F K VD++ E L L+G A +HG Q +R A+ F
Sbjct: 228 KFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKF 287
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
K G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GKTG+A TFI
Sbjct: 288 KQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP 347
Query: 501 NQSETTLLDLKHLLQEAKQRIPPVLAE-LNDPMEDVDAIT 539
+ + L+ + Q K+++ + A L++ +E +T
Sbjct: 348 REKDM----LRAIEQTTKRKMDRMKAPTLDEAIEGQQQVT 383
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 132/378 (34%), Positives = 210/378 (55%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F + P+ K + +G P+PIQ Q +P VL+G+D++ A TG+GKT F L
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
G+ L++ P+RELA Q E VE + Y LR+ + GGV
Sbjct: 62 LLAKGHKAKS---GQTR-ALVLTPTRELAAQVGESVETY------GKYLPLRSAVVFGGV 111
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
+ Q+ ++ GV ++VATPGRL D++ + + + L LDEADR++D+GF DI+++
Sbjct: 112 PINPQINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKI 171
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
A+RQ L+FSAT +I+ A+ + PV ++V AA V Q + V + K
Sbjct: 172 LALLPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKS 231
Query: 384 VYLLECL-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L++ + Q+ VL+F K + + + L+ + A A+HG K Q R A++ FK+
Sbjct: 232 ALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKS 291
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G+ VLVATD+A++GLD + V+N+D+P E+YVHRIGRTGR G TG A + ++ +
Sbjct: 292 GEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEE 351
Query: 503 SETTLLDLKHLLQEAKQR 520
+ L D++ L+ +R
Sbjct: 352 IKL-LKDIERLINRVLER 368
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 136/389 (34%), Positives = 212/389 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + ++K ++ G + TPIQ + +P+ L +D+IG A TG+GKT F +
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V L+V P+RELA Q E + + R +R L GG D
Sbjct: 64 VN--------VKNSAVQALVVAPTRELAIQVSEELYKIGAVKR------VRVLPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ H++V TPGR+ D + + + L++ + LDEAD ++++GF +DI +
Sbjct: 110 IERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
H A+RQTLLFSATMP I+ A + +P V V +A + IQ+ V ++ K
Sbjct: 170 SHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKV-KAKEMTVPNIQQYYLEVHEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L + P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G ++LVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GKTG+A TF+ +
Sbjct: 289 GAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRI----PPVLAE 527
+ L H+ + K+++ PP L E
Sbjct: 349 ----IGQLHHIERTTKRKMERMKPPTLDE 373
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 164/525 (31%), Positives = 268/525 (51%)
Query: 14 IAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQ 73
I K++ M K ++ + + + E ++A+ K ++ Q K+D+ + ++ +
Sbjct: 30 ITKQQTMSKDK---KEHKDKKRKHDNEDVEIADSKKQRKLE-KQEKKDKKDKKDKKE--K 83
Query: 74 QEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIV 133
+EK+ ++ ++K S + T + + +S+ D I V
Sbjct: 84 KEKKEKKHKKEKKHKDSESSPVEPAANDSSSSTNYTQSSKLSSVSQSDIDKFLSDNEITV 143
Query: 134 DGEDIPP--PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGS 191
+ PI +F ++ I KL +PTPIQ P +LSG+D+IG+A TGS
Sbjct: 144 EDPSSSSLRPILSFDQVQLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVIGVAETGS 201
Query: 192 GKTLVF-VLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYE-VVEQFLTPMRDA 249
GKT F V V L + P+RELA Q Y+ ++E LT D+
Sbjct: 202 GKTFAFGVPAINNIITTGNTKTLSV-------LCISPTRELALQIYDNLIE--LTA--DS 250
Query: 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309
G + + GGV Q+ +K ++VVATPGRL D++ +NL YL LDEAD
Sbjct: 251 G---VNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDLINDGAINLGKVNYLVLDEAD 306
Query: 310 RLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AA 366
R+++ GFE+DI+ + + ++RQTL+F+AT P +++ A + + PV V VG +A
Sbjct: 307 RMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSA 366
Query: 367 NLDVIQEVEYVKQ---EAKIVYLLE---CLQKTPPPVLIFCENKADVDDIHEYLLLKGVE 420
N + Q VE + + E K++ LL + + +LIF K + I +L
Sbjct: 367 NKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFS 426
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
A+HG Q++R A+S+FK+G+ ++L+ATDVA++GLD P+++ VIN P IE+YVH
Sbjct: 427 VAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVH 486
Query: 481 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525
RIGRTGR G G A T +++ + L ++L+ A Q +P L
Sbjct: 487 RIGRTGRAGAKGTAHTLFTEDEKHLSGA-LCNILRGANQPVPEEL 530
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 134/382 (35%), Positives = 205/382 (53%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F+ + +L+ ++ +G V+PTP+Q Q +PV+L RD++ A TG+GKT F L
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
LI+ P+RELA Q +E V + Y L+ + GGV
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAY------GKYLPLKATVVHGGV 124
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
++ Q+ ++RGV I+VATPGRL D++ + +NL + LDEADR++D+GF DIR +
Sbjct: 125 SIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRI 184
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
RQ LLFSAT +I+ L P + V R A + V V ++ K
Sbjct: 185 LKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKR 244
Query: 384 VYLLECL-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L + K VL+F K + + + L G+ + A+HG K Q R A++ FK
Sbjct: 245 ELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
GK VLVATDVA++GLD + HVIN+++P ++YVHR+GRTGR G+A + ++ ++
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDE 364
Query: 503 SETTLLDLKHLLQ-EAKQRIPP 523
L D++ LLQ + Q + P
Sbjct: 365 VRL-LRDIEKLLQSKMPQEVIP 385
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 134/382 (35%), Positives = 205/382 (53%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F+ + +L+ ++ +G V+PTP+Q Q +PV+L RD++ A TG+GKT F L
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
LI+ P+RELA Q +E V + Y L+ + GGV
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAY------GKYLPLKATVVHGGV 124
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
++ Q+ ++RGV I+VATPGRL D++ + +NL + LDEADR++D+GF DIR +
Sbjct: 125 SIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRI 184
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
RQ LLFSAT +I+ L P + V R A + V V ++ K
Sbjct: 185 LKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKR 244
Query: 384 VYLLECL-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L + K VL+F K + + + L G+ + A+HG K Q R A++ FK
Sbjct: 245 ELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
GK VLVATDVA++GLD + HVIN+++P ++YVHR+GRTGR G+A + ++ ++
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDE 364
Query: 503 SETTLLDLKHLLQ-EAKQRIPP 523
L D++ LLQ + Q + P
Sbjct: 365 VRL-LRDIEKLLQSKMPQEVIP 385
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 130/381 (34%), Positives = 212/381 (55%)
Query: 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLX 200
P K F D+ E +LK ++ KG P+PIQ Q +P V+SGRD++ A TG+GKT F L
Sbjct: 5 PTK-FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLP 63
Query: 201 XXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260
V LI+ P+RELA Q E +E + Y +L +++
Sbjct: 64 LLQRLSSSKGNK--VSSNNVRALILTPTRELAAQISESIEVY------GKYLNLHSMVVF 115
Query: 261 GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDI 320
GGV + Q+ +++GV ++VATPGRL D+ ++ + LDEADR++D+GF DI
Sbjct: 116 GGVKINPQIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDI 175
Query: 321 REVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE 380
+++ RQ LLFSAT +I+ A+ + P+ ++V + V Q + V ++
Sbjct: 176 KKLMTALPKDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKK 235
Query: 381 AKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISS 439
K L +++ VL+F + K + + ++L +G+ A A+HG K Q R A+++
Sbjct: 236 RKPAVLTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAA 295
Query: 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499
FK G +LVATD+A++G+D + V+N+D+P E+YVHRIGRT R G TG A + +
Sbjct: 296 FKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVC 355
Query: 500 KNQSETTLLDLKHLLQEAKQR 520
++ + L ++H++Q+ +R
Sbjct: 356 ADELDL-LWGIEHVIQQHIER 375
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 132/384 (34%), Positives = 204/384 (53%)
Query: 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXX 202
+ F+++ E +L+ L G +PTPIQ + +++G+D++G A TG+GKT F L
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 203 XXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
P L++ P+RELA Q E + M++ L GG
Sbjct: 66 NKVTSQTT---------PQILVLAPTRELAVQVAEAFSSYAKFMKN-----FHVLPIYGG 111
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
M+ QL +KRG ++V TPGR+ D + + + L+ + L LDEAD ++ +GF DDI
Sbjct: 112 QSMQQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEW 171
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI-QEVEYVKQEA 381
+ +H QRQ LFSATMP +I+ A L +++ A +D I Q V Q
Sbjct: 172 ILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIA-ASHTTVDSIEQRFVQVSQHN 230
Query: 382 KIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K+ L+ L+ + ++IF + ++ E L +G + +HG +Q+ RE A+
Sbjct: 231 KLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQL 290
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
K GK D+L+ATDVA++GLD I HV+NYD+P + E YVHRIGRTGR G+TG+A F+
Sbjct: 291 KNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTS 350
Query: 501 NQSETTLLDLKHLLQEAKQRIPPV 524
+ L+ + + RI P+
Sbjct: 351 REMRM----LRTIERATNSRISPM 370
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 544 (196.6 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 141/463 (30%), Positives = 243/463 (52%)
Query: 88 LMSVREL-AKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFK 146
L+ ++E AK I + D W+ P+ M + ++++ ++I + G+D+P P++N++
Sbjct: 197 LIQLQEKRAKKIDWDD---VPWREK-PLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWE 252
Query: 147 DMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXX 206
+ P +LK LK +P+ IQ +PV+L +D+IGIA TGSGKT F++
Sbjct: 253 EAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAIS 312
Query: 207 XXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM-------------RDAGYP- 252
GP+ +++ P+RELA+Q +F P+ + +
Sbjct: 313 KLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQM 372
Query: 253 --DLRTLLCIGG--VD-MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307
++ G +D + +L V+ + ++V+ R+ DM + +N + +
Sbjct: 373 SQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNA 432
Query: 308 ADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN 367
+++ + I + ++RQT++FSAT+P ++ N A+S L++PV + +G G A
Sbjct: 433 SEK------DGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAV 486
Query: 368 LDVIQEVEYVKQEAK----IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVA 423
V Q VE + ++K + +LE + PP++IF K +++ I + L G AV
Sbjct: 487 DRVEQRVEMISDDSKKWRRVEEILES-NRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVT 545
Query: 424 VHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIG 483
+HG K QE+RE AI + D+LVATD+A +G+D P++ V+NY+M IE+Y HRIG
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIG 605
Query: 484 RTGRCGKTGIATTFINKNQSETTLLDLKHLL-QEAKQRIPPVL 525
RTGR GK+G A TF+ ++ DL+ LL + AK IP L
Sbjct: 606 RTGRAGKSGTAITFLGPEDTDV-YYDLRVLLSRSAKAHIPDEL 647
Score = 42 (19.8 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 62 QPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAK 96
Q I EQ+VQQ K + E + R +S E A+
Sbjct: 4 QDSIPSLEQLVQQ-KRVKEEKAARPKFLSKAERAR 37
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 134/383 (34%), Positives = 211/383 (55%)
Query: 154 ILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVL-------------- 199
+LK +KA G TPIQ + +PV+ G D++ A TG+GKT F L
Sbjct: 12 LLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAK 71
Query: 200 XXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259
G+ LI+ P+RELA Q + ++QF + Y +++ +
Sbjct: 72 SSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQF------SQYLPIKSGVV 125
Query: 260 IGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319
GG M SQ +++K+G+ ++VATPGRL + LA + ++L ++L LDEADR++D+GF D
Sbjct: 126 YGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTD 185
Query: 320 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379
I ++ K + QTL+FSAT ++++ A L P T++V + + + Q V +V +
Sbjct: 186 IEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTE 245
Query: 380 EAKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438
E K L E + VL+F K + + + L L G++A HG K Q R A+
Sbjct: 246 ERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALE 305
Query: 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498
F GK VLVATDVA++GLD PD+ V+N+ +P E+YVHR+GRTGR GK+G A + +
Sbjct: 306 QFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLV 365
Query: 499 NKNQSETTLLDLKHLLQEAKQRI 521
+ + E L +++ L++ +RI
Sbjct: 366 SP-KDERFLENIEQLIERKFERI 387
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 144/396 (36%), Positives = 214/396 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F + +L L GI PTPIQ Q +P VL G+D++ A TG+GKT F L
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
E L++ P+RELA+Q + ++ + A +L+ + GG
Sbjct: 68 FIEQPWQREANSKEIR-ALVLVPTRELAQQVLDSLQAY------AKGTELKIVAVYGGTS 120
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
M+ QL ++ GV I++ATPGRL D K + L L LDEADR++D+GF D++ V
Sbjct: 121 MKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
RQTL FSAT +KI+ A + P+ V V + + + +Q++ Y + +
Sbjct: 181 RRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNST-AETVQQMVYPVDKKRKR 239
Query: 385 YLLECL--QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
LL L K VL+F + + D + E L L G++AV+++G K Q R+ A+ FKA
Sbjct: 240 ELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA 299
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
GK L+ATDVA++GLD ++ V+NYDMP + E+YVHRIGRTGR G G+A + ++ ++
Sbjct: 300 GKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Query: 503 SETTLLDLKHLL-----QE-AKQRIP-PVLAELNDP 531
+ L ++ LL QE K P PV+ E N P
Sbjct: 360 -QPQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSP 394
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 144/396 (36%), Positives = 214/396 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F + +L L GI PTPIQ Q +P VL G+D++ A TG+GKT F L
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
E L++ P+RELA+Q + ++ + A +L+ + GG
Sbjct: 68 FIEQPWQREANSKEIR-ALVLVPTRELAQQVLDSLQAY------AKGTELKIVAVYGGTS 120
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
M+ QL ++ GV I++ATPGRL D K + L L LDEADR++D+GF D++ V
Sbjct: 121 MKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
RQTL FSAT +KI+ A + P+ V V + + + +Q++ Y + +
Sbjct: 181 RRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNST-AETVQQMVYPVDKKRKR 239
Query: 385 YLLECL--QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
LL L K VL+F + + D + E L L G++AV+++G K Q R+ A+ FKA
Sbjct: 240 ELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA 299
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
GK L+ATDVA++GLD ++ V+NYDMP + E+YVHRIGRTGR G G+A + ++ ++
Sbjct: 300 GKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Query: 503 SETTLLDLKHLL-----QE-AKQRIP-PVLAELNDP 531
+ L ++ LL QE K P PV+ E N P
Sbjct: 360 -QPQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSP 394
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 536 (193.7 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 131/361 (36%), Positives = 197/361 (54%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F+ M PILK L G PT IQ + +P+ L G+D++G A TGSGKT F++
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
VP LI+CP+RELA Q + V + A + D+ LCIGG+
Sbjct: 320 RLLYRPKK---VPTTR--VLILCPTRELAMQCHSVATKI------ASFTDIMVCLCIGGL 368
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGFEDDIRE 322
++ Q + +++ IV+ATPGR D + + ++N + +DEADR+++ GF D++ E
Sbjct: 369 SLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNE 428
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV-GRAGAANLDVIQEVEYVKQE- 380
+ RQT+LFSATM K+ + R +L +PV V V + A L + QE V+ +
Sbjct: 429 IIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKL-LTQEFVRVRPQR 487
Query: 381 -----AKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREY 435
A ++YL C + +IF +KA + L + A +HG QE+R
Sbjct: 488 ELLRPAMLIYL--CKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVR 545
Query: 436 AISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495
A+ F+ GK + L+ATDVAS+G+D I+ VINY+ PA E Y+HR+GRT R G++G A
Sbjct: 546 ALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAI 605
Query: 496 T 496
T
Sbjct: 606 T 606
Score = 46 (21.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSK 43
EEEDD E VP + + G + + EDE E +K
Sbjct: 199 EEEDDITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAK 239
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 523 (189.2 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 132/382 (34%), Positives = 199/382 (52%)
Query: 132 IVDGEDIPPPIK-NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTG 190
++DG+ + + +F+ M ILK G PTPIQ +PV L+G+D+ A TG
Sbjct: 136 LIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATG 195
Query: 191 SGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFC---LIVCPSRELARQTYEVVEQFLTPMR 247
+GKT FVL P +G C L++ P+RELA Q ++V + T
Sbjct: 196 TGKTAAFVLPILERMIYR-------P-KGASCTRVLVLVPTRELAIQVFQVFRKLST--- 244
Query: 248 DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTLD 306
+ L LC GG+D+++Q ++ G +VVATPGRL D L NL N L LD
Sbjct: 245 ---FIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLD 301
Query: 307 EADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAA 366
EADR+++ F D + E+ RQTLLFSATM +I A +L KPV + +
Sbjct: 302 EADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDT 361
Query: 367 NLDVIQEVEYVK------QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE 420
L + QE ++ +EA + L+ +T ++F K D + L L G++
Sbjct: 362 ALKLRQEFIRIRAGRETDREAMVAALVTRTFQTN--TIVFVRTKKDCQRMQILLGLLGIK 419
Query: 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 480
+ Q +R ++S FK + DVLV+TD+AS+GLD +Q VIN +MP I+ Y+H
Sbjct: 420 VGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIH 479
Query: 481 RIGRTGRCGKTGIATTFINKNQ 502
R+GRT R GK G + + + +++
Sbjct: 480 RVGRTARAGKAGRSISLVGEDE 501
Score = 58 (25.5 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 17 RRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEK 76
R + QK L++ Q T DE K+AE++ + + D+ E + E+ +E+
Sbjct: 47 RETEDLQKYLKK--QTPTSLDE----KIAEMRKLKNTGKAVIVEDEAEAAEAEE-KDEEE 99
Query: 77 EMIENLSDRKTLMSVRELAK 96
+ ++ L ++T +VRE K
Sbjct: 100 DDVQQLGGKETRDTVREKRK 119
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 530 (191.6 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 143/431 (33%), Positives = 223/431 (51%)
Query: 123 DLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRD 182
D K + VDG F ++ P+L+ + G +PTPIQ +P+ L+GRD
Sbjct: 149 DATPKPFFSTVDGVSFHAD--TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRD 206
Query: 183 MIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQF 242
+ A TGSGKT F L LI+ P+RELA Q + +++
Sbjct: 207 LCASAITGSGKTAAFALPTLERLLFRPKRVFATR-----VLILTPTRELAVQIHSMIQNL 261
Query: 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGV-HIVVATPGRLKDMLAKK-KMNLDNC 300
A + D++ L +GG+ +R Q EVV R + IVVATPGR+ D L ++LD+
Sbjct: 262 ------AQFTDIKCGLIVGGLSVREQ-EVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDL 314
Query: 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360
L LDEADRL+ GF +I E+ +RQT+LFSATM +++ + +L KP+ ++
Sbjct: 315 AVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA 374
Query: 361 GRAGAANLDVIQEVEYVKQ--EA--KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLL 416
+ + +EV +++ EA + V L C + V+IF K + L
Sbjct: 375 DPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGL 434
Query: 417 KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 476
G++A +HG Q +R ++ F+ + D L+ATDVA++GLD +Q VINY P EI+
Sbjct: 435 AGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREID 494
Query: 477 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPP---VL--AELNDP 531
+YVHR+GRT R G+ G A TF+ + + K + + K R+ P ++ +++ D
Sbjct: 495 SYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDE 554
Query: 532 MED-VDAITNA 541
MED A+ +A
Sbjct: 555 MEDQYSAVISA 565
Score = 57 (25.1 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 3 EEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQ 62
EEEDD E ++R +AQ +S++ +E + + + KA Q R
Sbjct: 50 EEEDDDEEEEDEKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKIS-KAIQ-HRPV 107
Query: 63 PEISPTEQIVQQEKEMIENLSDRKT 87
P IS E+ ++E+E E+ SD +T
Sbjct: 108 P-ISINEEEEEEEEE--EDASDAET 129
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 135/380 (35%), Positives = 204/380 (53%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F + ++ L G QPTPIQV+ +P +L+ +D++ A TG+GKT F L
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
+ L++ P+RELA Q V + F+ + A D+R + GGV
Sbjct: 62 LLMADNQSDHAA--KAIRALVLVPTRELALQ---VQQSFV---KYAKGTDIRVGIAYGGV 113
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
+ +Q V G+ +++ATPGRL D L + +NL+ L DEADR++D+GF D+I+ V
Sbjct: 114 SIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAV 173
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
AQRQTLLFSAT+ I +F+++ L P + V + + Q V + + K
Sbjct: 174 LKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKT 233
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
++ ++ K VLIF K VD + L GV + HG Q RE + FK
Sbjct: 234 EFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQ 293
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G VLVATDVA++GLD ++Q+VIN+++P E+Y+HRIGRTGR G G+A T + Q
Sbjct: 294 GLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFS--Q 351
Query: 503 SETTLLDLKHLLQEAKQRIP 522
+ LL+ L + +R+P
Sbjct: 352 EDALLLEEVETLLD--KRLP 369
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 135/380 (35%), Positives = 204/380 (53%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F + ++ L G QPTPIQV+ +P +L+ +D++ A TG+GKT F L
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
+ L++ P+RELA Q V + F+ + A D+R + GGV
Sbjct: 62 LLMADNQSDHAA--KAIRALVLVPTRELALQ---VQQSFV---KYAKGTDIRVGIAYGGV 113
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
+ +Q V G+ +++ATPGRL D L + +NL+ L DEADR++D+GF D+I+ V
Sbjct: 114 SIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAV 173
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
AQRQTLLFSAT+ I +F+++ L P + V + + Q V + + K
Sbjct: 174 LKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKT 233
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
++ ++ K VLIF K VD + L GV + HG Q RE + FK
Sbjct: 234 EFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQ 293
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G VLVATDVA++GLD ++Q+VIN+++P E+Y+HRIGRTGR G G+A T + Q
Sbjct: 294 GLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFS--Q 351
Query: 503 SETTLLDLKHLLQEAKQRIP 522
+ LL+ L + +R+P
Sbjct: 352 EDALLLEEVETLLD--KRLP 369
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 126/358 (35%), Positives = 196/358 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F + ++K + G PTPIQ Q +P +L+G++++ A TG+GKT FVL
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
+ + +I+ P+RELA Q + + Q+ A Y L + GGVD
Sbjct: 63 FADAPK----IRPKRVRSIILTPTRELALQVEQNINQY------AKYLPLTAMAMYGGVD 112
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
Q + + GV ++VATPGRL DM ++ + D L LDEADR++D+GF +DI +
Sbjct: 113 AAPQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNII 172
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
+ QRQ LLFSAT+ +++ A++A+ + + + R AA+ + Q + V ++ K
Sbjct: 173 EKLPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSA 232
Query: 385 YLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443
L +++ LIF + K + L +G+ A A H G+ Q RE + FKAG
Sbjct: 233 LLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAG 292
Query: 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501
K LVAT V S+G+D ++ VINYD+P E ++Y+HRIGRTGR G G A +F++K+
Sbjct: 293 KVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKD 350
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 127/381 (33%), Positives = 209/381 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F ++ P+L +L QPTPIQ + +P V +GRD+I A TGSGKT F L
Sbjct: 10 FTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQK 69
Query: 205 XXXXXXXXXXVPGEGPFC--LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
+G F L++ P+RELA+Q + ++ + +++TL GG
Sbjct: 70 LREDISSGSK-NSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNG----EIKTLAVFGG 124
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
V + Q+ ++ GV I+VATPGRL D+++ + LD + L LDEADR++ LGF +++
Sbjct: 125 VSVNIQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTA 184
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382
+ ++QTLLFSAT P ++ + L P+ + + A A+ L +Q V V + K
Sbjct: 185 LLALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQSADASTL--VQRVFTVNKGEK 242
Query: 383 IVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441
L +Q+ LIF K + + E L +G+ A HG K Q ER + FK
Sbjct: 243 TAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFK 302
Query: 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN-K 500
AG +VL+ATD+A++GLD + VIN+++P +Y+HRIGR+GR G+ G+A + I+ +
Sbjct: 303 AGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHE 362
Query: 501 NQSETTLLDLKHLLQEAKQRI 521
+ ++++ K+ + ++++
Sbjct: 363 DYHHFSVIEKKNKFRLKREQV 383
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 126/358 (35%), Positives = 196/358 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F + ++K + G PTPIQ Q +P +L+G++++ A TG+GKT FVL
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
+ + +I+ P+RELA Q + + Q+ A Y L + GGVD
Sbjct: 63 FADAPK----IRPKRVRSIILTPTRELALQVEQNINQY------AKYLPLTAMAMYGGVD 112
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
Q + + GV ++VATPGRL DM ++ + D L LDEADR++D+GF +DI +
Sbjct: 113 AAPQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNII 172
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
+ QRQ LLFSAT+ +++ A++A+ + + + R AA+ + Q + V ++ K
Sbjct: 173 EKLPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSA 232
Query: 385 YLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443
L +++ LIF + K + L +G+ A A H G+ Q RE + FKAG
Sbjct: 233 LLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAG 292
Query: 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501
K LVAT V S+G+D ++ VINYD+P E ++Y+HRIGRTGR G G A +F++K+
Sbjct: 293 KVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKD 350
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 136/383 (35%), Positives = 206/383 (53%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF---VLX 200
+F + E +++ ++A G QPTP+Q + +P VL GRD++ A TG+GKT F +L
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 201 XXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260
P + P L++ P+RELA Q +E F RD + CI
Sbjct: 62 RLFPNGVPDKSQRHGPRQ-PRVLVLTPTRELAAQVHE---SFKLYARDLKFVSA----CI 113
Query: 261 -GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319
GGV M Q++ + RGV ++VA PGRL D+ + ++L + L LDEADR++D+GF D
Sbjct: 114 FGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHD 173
Query: 320 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379
+++V A+RQ LLFSAT I + A L P + V + Q V +
Sbjct: 174 VKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA 233
Query: 380 EAKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438
K L + VL+F K + + EYL G+ AVA+HG K Q R A++
Sbjct: 234 NHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALA 293
Query: 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498
FKAG ++VATD+A++GLD + HV+N+++P E+YVHRIGRTGR G++G A + +
Sbjct: 294 DFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353
Query: 499 NKNQSETTLLDLKHLLQEAKQRI 521
++ + LK + + KQ+I
Sbjct: 354 APDEEKL----LKSIERMTKQKI 372
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 130/363 (35%), Positives = 193/363 (53%)
Query: 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXX 202
K F +R P+L+ L + G + TPIQ LP++L+G+D+I A TGSGKT F +
Sbjct: 4 KAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL 63
Query: 203 XXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
L++CP+RELA Q + + + L D +++ L GG
Sbjct: 64 SRLDALSFRVQA--------LVLCPTRELADQVGKELRR-LARFTD----NIKILTICGG 110
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
V QL ++ G H+V+ TPGRL D L + ++L R L LDEADR++D+GF+DDI
Sbjct: 111 VPFGPQLGSLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISA 170
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382
+ +RQTLLFSAT P I + +PV V+V I++V Y +
Sbjct: 171 LIAAAPPKRQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEG--AIEQVFYEVDSGQ 228
Query: 383 IVYLLECL--QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
+ +E + P LIFC K + ++ L ++G A+A+HG DQ ER+ + F
Sbjct: 229 RIEAVERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRF 288
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
VLVATDVA++GLD ++ VINY++ E + HRIGRTGR G+ G+A + +
Sbjct: 289 ANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTP 348
Query: 501 NQS 503
+S
Sbjct: 349 RES 351
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 169/515 (32%), Positives = 259/515 (50%)
Query: 20 MEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEIS-PTEQIVQQEKEM 78
M ++I +K + E+ +EK K + K K + K+D+ E+ ++E E+
Sbjct: 1 MTKEEIADKKRKVVD-EEVIEKKKSKKHKKDK--KDKKEKKDKKHKKHKKEKKGEKEVEV 57
Query: 79 IENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIV-DGED 137
E S++K +A LT LP + D K+ I V D D
Sbjct: 58 PEKESEKKP-EPTSAVASEFYVQSEALTS----LP-----QSDIDEYFKENEIAVEDSLD 107
Query: 138 IP-PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 196
+ P+ +F + I ++ +PTPIQ P +LSG+D++G+A TGSGKT
Sbjct: 108 LALRPLLSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFA 165
Query: 197 FVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRT 256
F + G L++ P+RELA Q Y+ L + D ++
Sbjct: 166 FGVPAISHLMNDQKK------RGIQVLVISPTRELASQIYDN----LIVLTDK--VGMQC 213
Query: 257 LLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF 316
GGV Q +K+ +VVATPGRL D+L + ++L YL LDEADR+++ GF
Sbjct: 214 CCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGF 272
Query: 317 EDDIREVFDHFKA-QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQE 373
E+DI+ + A +RQTL+F+AT P +++ A + + P+ V++G AN + Q
Sbjct: 273 EEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQI 332
Query: 374 VEYVKQEAKIVYLLECLQK--TPPP----VLIFCENKADVDDIHEYLLLKGVEAVAVHGG 427
VE V K LLE L+K + P VLIF K + + L G A+HG
Sbjct: 333 VEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGD 392
Query: 428 KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 487
Q++R A++ FK+GK ++L+ATDVA++GLD P+++ VIN P +E+YVHRIGRTGR
Sbjct: 393 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 452
Query: 488 CGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522
G+TG A T + Q + L ++L A Q +P
Sbjct: 453 AGQTGTAHTLFTE-QEKHLAGGLVNVLNGANQPVP 486
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 540 (195.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 143/395 (36%), Positives = 204/395 (51%)
Query: 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLX 200
PI F ++ + + LK +PTPIQ P +L+GRD++GIA TGSGKT+ F +
Sbjct: 165 PILQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 201 XXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260
P L+V P+RELA QTYE + + G +L+ ++
Sbjct: 223 ALQYLNGLSDNKSV-----PRVLVVSPTRELAIQTYENLNSLIQ-----G-TNLKAVVVY 271
Query: 261 GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDI 320
GG Q K +++ TPGRL D++ ++ YL LDEADR++D GFE DI
Sbjct: 272 GGAPKSEQARAAKNA-SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDI 330
Query: 321 REVFDHF-----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEV 374
R + H RQT+ FSAT P ++ A + L PV + +G AA+ ++ Q V
Sbjct: 331 RNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIV 390
Query: 375 EYVKQEAKIVYLLE-CLQK------TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGG 427
E + +L+ L+K +LIF K + + E L + V +HG
Sbjct: 391 EILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARV-EGTLARKYNVVGIHGD 449
Query: 428 KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 487
Q R A++ FK+GK VLVATDVA++GLD P +Q VIN P IE+YVHRIGRTGR
Sbjct: 450 MSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGR 509
Query: 488 CGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522
G A TF Q ++ +L ++L++AKQ IP
Sbjct: 510 ANTKGTAITFFTP-QDKSHAGELVNVLRQAKQDIP 543
Score = 38 (18.4 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 16 KRRAMEAQKILQRKGQASTLEDELE 40
K R + K +KG++ T E+ +E
Sbjct: 91 KDRISKKDKKKSKKGKSKTKEESIE 115
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/392 (34%), Positives = 214/392 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + +L+ +++ G + TPIQ + +P L G+D+IG A TG+GKT F L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V G +++ P+RELA Q E + + R +R L GG D
Sbjct: 64 VDTHKES---VQG-----IVIAPTRELAIQVGEELYKIGKHKR------VRILPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ HI+V TPGR+ D + +K + L N + LDEAD ++++GF +DI +
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
QTLLFSATMP I+ A + +P + V +A + IQ+ V+++ K
Sbjct: 170 TDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV-KAKEVTMPNIQQFYLEVQEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L ++P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GK GIA F+ +
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAE-LNDPME 533
S LK++ + K+++ + A L++ +E
Sbjct: 349 SG----QLKNIERTTKRKMDRMDAPTLDEALE 376
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/383 (35%), Positives = 206/383 (53%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF---VLX 200
+F + E ++ ++A G QPTP+Q + +P VL GRD++ A TG+GKT F +L
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 201 XXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260
P + P L++ P+RELA Q ++ F RD + CI
Sbjct: 62 RLFPNGHPDKSQRHGPRQ-PRVLVLTPTRELAAQVHD---SFKLYARDLKFVSA----CI 113
Query: 261 -GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319
GGV M Q++ + RGV ++VA PGRL D+ + ++L + L LDEADR++D+GF D
Sbjct: 114 FGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHD 173
Query: 320 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379
+++V A+RQ LLFSAT I + A L P + V + Q V +
Sbjct: 174 VKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA 233
Query: 380 EAKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438
K L + VL+F K + + EYL G+ AVA+HG K Q R A++
Sbjct: 234 SHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALA 293
Query: 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498
FKAG+ +LVATD+A++GLD + HV+N+++P E+YVHRIGRTGR G++G A + +
Sbjct: 294 DFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353
Query: 499 NKNQSETTLLDLKHLLQEAKQRI 521
++ + LK + + KQ+I
Sbjct: 354 APDEEKL----LKSIERMTKQKI 372
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/392 (34%), Positives = 214/392 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + +L+ +++ G + TPIQ + +P L G+D+IG A TG+GKT F L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V G +++ P+RELA Q E + + R +R L GG D
Sbjct: 64 VDTHKES---VQG-----IVIAPTRELAIQVGEELYKIGKHKR------VRILPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ HI+V TPGR+ D + +K + L N + LDEAD ++++GF +DI +
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
QTLLFSATMP I+ A + +P + V +A + IQ+ V+++ K
Sbjct: 170 TDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV-KAKEVTMPNIQQFYLEVQEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L ++P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GK GIA F+ +
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAE-LNDPME 533
S LK++ + K+++ + A L++ +E
Sbjct: 349 SG----QLKNIERTTKRKMDRMDAPTLDEALE 376
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/392 (34%), Positives = 214/392 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + +L+ +++ G + TPIQ + +P L G+D+IG A TG+GKT F L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V G +++ P+RELA Q E + + R +R L GG D
Sbjct: 64 VDTHKES---VQG-----IVIAPTRELAIQVGEELYKIGKHKR------VRILPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ HI+V TPGR+ D + +K + L N + LDEAD ++++GF +DI +
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
QTLLFSATMP I+ A + +P + V +A + IQ+ V+++ K
Sbjct: 170 TDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV-KAKEVTMPNIQQFYLEVQEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L ++P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GK GIA F+ +
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAE-LNDPME 533
S LK++ + K+++ + A L++ +E
Sbjct: 349 SG----QLKNIERTTKRKMDRMDAPTLDEALE 376
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/392 (34%), Positives = 214/392 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + +L+ +++ G + TPIQ + +P L G+D+IG A TG+GKT F L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V G +++ P+RELA Q E + + R +R L GG D
Sbjct: 64 VDTHKES---VQG-----IVIAPTRELAIQVGEELYKIGKHKR------VRILPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ HI+V TPGR+ D + +K + L N + LDEAD ++++GF +DI +
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
QTLLFSATMP I+ A + +P + V +A + IQ+ V+++ K
Sbjct: 170 TDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV-KAKEVTMPNIQQFYLEVQEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L ++P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GK GIA F+ +
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAE-LNDPME 533
S LK++ + K+++ + A L++ +E
Sbjct: 349 SG----QLKNIERTTKRKMDRMDAPTLDEALE 376
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/392 (34%), Positives = 214/392 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + +L+ +++ G + TPIQ + +P L G+D+IG A TG+GKT F L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V G +++ P+RELA Q E + + R +R L GG D
Sbjct: 64 VDTHKES---VQG-----IVIAPTRELAIQVGEELYKIGKHKR------VRILPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ HI+V TPGR+ D + +K + L N + LDEAD ++++GF +DI +
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
QTLLFSATMP I+ A + +P + V +A + IQ+ V+++ K
Sbjct: 170 TDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV-KAKEVTMPNIQQFYLEVQEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L ++P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GK GIA F+ +
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAE-LNDPME 533
S LK++ + K+++ + A L++ +E
Sbjct: 349 SG----QLKNIERTTKRKMDRMDAPTLDEALE 376
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/392 (34%), Positives = 214/392 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + +L+ +++ G + TPIQ + +P L G+D+IG A TG+GKT F L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V G +++ P+RELA Q E + + R +R L GG D
Sbjct: 64 VDTHKES---VQG-----IVIAPTRELAIQVGEELYKIGKHKR------VRILPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ HI+V TPGR+ D + +K + L N + LDEAD ++++GF +DI +
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
QTLLFSATMP I+ A + +P + V +A + IQ+ V+++ K
Sbjct: 170 TDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV-KAKEVTMPNIQQFYLEVQEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L ++P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GK GIA F+ +
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAE-LNDPME 533
S LK++ + K+++ + A L++ +E
Sbjct: 349 SG----QLKNIERTTKRKMDRMDAPTLDEALE 376
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/392 (34%), Positives = 214/392 (54%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F+++ + +L+ +++ G + TPIQ + +P L G+D+IG A TG+GKT F L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V G +++ P+RELA Q E + + R +R L GG D
Sbjct: 64 VDTHKES---VQG-----IVIAPTRELAIQVGEELYKIGKHKR------VRILPIYGGQD 109
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K+ HI+V TPGR+ D + +K + L N + LDEAD ++++GF +DI +
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-VKQEAKI 383
QTLLFSATMP I+ A + +P + V +A + IQ+ V+++ K
Sbjct: 170 TDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV-KAKEVTMPNIQQFYLEVQEKKKF 228
Query: 384 VYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L L ++P ++F K VD++ E L L+G A +HG Q +R + FK
Sbjct: 229 DVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G +VLVATDVA++GLD + HV N+D+P + E+YVHRIGRTGR GK GIA F+ +
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAE-LNDPME 533
S LK++ + K+++ + A L++ +E
Sbjct: 349 SG----QLKNIERTTKRKMDRMDAPTLDEALE 376
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 132/378 (34%), Positives = 208/378 (55%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F + PILK ++ KG P+PIQ+Q +P VL+G+D++ A TG+GKT F L
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V LI+ P+RELA Q + V M + L++ + GGV
Sbjct: 63 LAKGPK----VRANQVRALILTPTRELAAQIQDNV------MLYGRHLPLKSAVVFGGVK 112
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q++ + +G I+VATPGRL D+ + + D L LDEADR++D+GF DI ++
Sbjct: 113 INPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKIL 172
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
+RQ LLFSAT T+I+ A+ + PV ++V A + V Q + + K
Sbjct: 173 KLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPD 232
Query: 385 YLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443
L++ +++ VL+F K + + YL +G+ A A+HG K Q R A++ FKAG
Sbjct: 233 MLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAG 292
Query: 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503
+ +LVATD+A++G+D P + V+N+++P E+YVHRIGRTGR G+ G A + ++ ++
Sbjct: 293 EVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA 352
Query: 504 ETTLLDLKHLLQEAKQRI 521
L ++ L Q R+
Sbjct: 353 PE-LFAIERLTQALLPRV 369
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 132/378 (34%), Positives = 208/378 (55%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F + PILK ++ KG P+PIQ+Q +P VL+G+D++ A TG+GKT F L
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
V LI+ P+RELA Q + V M + L++ + GGV
Sbjct: 63 LAKGPK----VRANQVRALILTPTRELAAQIQDNV------MLYGRHLPLKSAVVFGGVK 112
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q++ + +G I+VATPGRL D+ + + D L LDEADR++D+GF DI ++
Sbjct: 113 INPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKIL 172
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
+RQ LLFSAT T+I+ A+ + PV ++V A + V Q + + K
Sbjct: 173 KLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPD 232
Query: 385 YLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443
L++ +++ VL+F K + + YL +G+ A A+HG K Q R A++ FKAG
Sbjct: 233 MLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAG 292
Query: 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503
+ +LVATD+A++G+D P + V+N+++P E+YVHRIGRTGR G+ G A + ++ ++
Sbjct: 293 EVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA 352
Query: 504 ETTLLDLKHLLQEAKQRI 521
L ++ L Q R+
Sbjct: 353 PE-LFAIERLTQALLPRV 369
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 133/373 (35%), Positives = 208/373 (55%)
Query: 134 DGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGK 193
D ED+ K+F ++ +P+ + G ++P+ IQ LP L G+D+IG+A TGSGK
Sbjct: 37 DEEDVKE--KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGK 94
Query: 194 TLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD 253
T F + P + FCL++ P+RELA +++ +QF G
Sbjct: 95 TGAFAIPVLQSLLDH-------P-QAFFCLVLTPTRELA---FQIGQQFEALGSGIG--- 140
Query: 254 LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLV 312
L + +GGVDM +Q + R HI+VATPGRL D L K NL ++L +DEADR++
Sbjct: 141 LIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRIL 200
Query: 313 DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQ 372
++ FE ++ ++ +R+T LFSATM K+ R++L P V+V ++ Q
Sbjct: 201 NMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQ 260
Query: 373 EVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQE 431
+V + K YL+ L + ++FC A I L G++AV +HG QE
Sbjct: 261 HYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQE 320
Query: 432 EREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT 491
+R +++ FK+ +++LV TDVA++GLD P + VINYDMP++ ++YVHR+GRT R G++
Sbjct: 321 KRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRS 380
Query: 492 GIATTFINKNQSE 504
GIA T + + E
Sbjct: 381 GIAITVVTQYDVE 393
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 521 (188.5 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 129/404 (31%), Positives = 213/404 (52%)
Query: 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXX 202
++F ++ +++ K +PTPIQ + +P L G D+IG+A TGSGKT F +
Sbjct: 81 ESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPIL 140
Query: 203 XXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
E + I+ P+RELA+Q E + + M +R+ +GG
Sbjct: 141 NRLWHDQ--------EPYYACILAPTRELAQQIKETFDSLGSLM------GVRSTCIVGG 186
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGFEDDIR 321
++M Q + R HI++ATPGRL D L K +L ++L +DEADRL+D+ F +
Sbjct: 187 MNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLD 246
Query: 322 EVFDHFKAQ-RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE 380
+ Q R T LFSATM +KI R++L PV V ++Q + V
Sbjct: 247 RILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG 306
Query: 381 AKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISS 439
K YL+ L + ++IF KA+ + + L A A+HG +Q +R ++
Sbjct: 307 LKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDL 366
Query: 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499
FKAGK+ +LVATDVA++GLD P + V+NYD+P + ++Y+HR+GRT R G++G + + ++
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426
Query: 500 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASG 543
+ E +L ++ +L + ++P + N + D++ A+G
Sbjct: 427 QYDLEL-ILRIEEVLGK---KLPKESVDKNIILTLRDSVDKANG 466
Score = 54 (24.1 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 22/98 (22%), Positives = 38/98 (38%)
Query: 6 DDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEI 65
D+ + +A+E QK L + E + E+ AE K L K+ Q E
Sbjct: 14 DELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNEN 73
Query: 66 SPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDP 103
+ E E E+ S+ + + + K + Y+ P
Sbjct: 74 T-------NEDESFESFSELNLVPELIQACKNLNYSKP 104
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 137/395 (34%), Positives = 208/395 (52%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F +++ ILK + A G +PTP+Q +P L D++ A TG+GKT FVL
Sbjct: 3 FAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQR 62
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
PG GP L++ P+RELA+Q + V + MR +R+ +GG+
Sbjct: 63 LSSPPQG----PGRGPRVLVLTPTRELAQQVTDAVRTYGAFMR------VRSGAILGGMP 112
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+QL ++ V +VATPGRL D+L ++ ++L L LDEADR++D+GF DD+ +
Sbjct: 113 YHAQLRLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIA 172
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
A RQTLLF+ATM + + A L +P +++ + + Q +
Sbjct: 173 AASPATRQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKN 232
Query: 385 YLLECL--QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
LL L ++ +IF K D +++ L +G A A+HG Q R I++ K
Sbjct: 233 RLLRHLITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQ 292
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502
G+ +LVATDVA++GLD I HVIN+D+P E+YVHRIGRTGR G +GIA +F + N+
Sbjct: 293 GRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNE 352
Query: 503 SETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDA 537
+++ Q + P L E + P+ V A
Sbjct: 353 VNYLARIERYIGQTLPEHHIPGL-EPSRPLRRVSA 386
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 520 (188.1 bits), Expect = 7.9e-54, Sum P(2) = 7.9e-54
Identities = 132/417 (31%), Positives = 210/417 (50%)
Query: 134 DGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGK 193
DGE++ + P+ + + L+ +GI PIQ L L GRD+I A TG+GK
Sbjct: 98 DGEELA-----ISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGK 152
Query: 194 TLVFVLXXXXXXXXXXXXXXXVPGEG--PFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
TL F + G P L++ P+RELA+Q + +++
Sbjct: 153 TLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--------SA 204
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 311
P L T+ GGV Q + RGV +VV TPGR+ D++ + + L YL LDEAD++
Sbjct: 205 PYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQM 264
Query: 312 VDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVN-VGRAG---AAN 367
+ +GFE+ + + ++ +RQ++LFSATMPT ++ AR L P+ ++ VG A
Sbjct: 265 LAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEG 324
Query: 368 LDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGG 427
+ + + I+ L + ++F + K D D++ L + A+HG
Sbjct: 325 IKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEV-SLALSNSIATEALHGD 383
Query: 428 KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 487
Q +RE +++F+ GK VLVATDVAS+GLD P++ VI+Y++P + E +VHR GRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 488 CGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGV 544
GK G A +Q T + + + PP + +L + D + +GV
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSAD-QVVATLNGV 499
Score = 56 (24.8 bits), Expect = 7.9e-54, Sum P(2) = 7.9e-54
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 547 CAYCGGLGHRIRDCP 561
C CG GHR DCP
Sbjct: 729 CFICGKSGHRATDCP 743
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 127/364 (34%), Positives = 204/364 (56%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+FK++ E + + G +PT IQ++ +PV L GRD+IG+A TGSGKT F +
Sbjct: 80 SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
L++ P+RELA +++ EQF G ++T + +GG+
Sbjct: 140 SLLACAQRLHT--------LVLTPTRELA---FQIAEQFDALGSSIG---VKTAVIVGGI 185
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGFEDDIRE 322
DM SQ V+ + H+V+ATPGRL D + K NL +YL +DEADR++++ FE ++ +
Sbjct: 186 DMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDK 245
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE-YVKQEA 381
+ R+T LFSATM K+Q R+AL PV +V + A +D +Q+ ++ +
Sbjct: 246 ILKVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVS-SKYATVDKLQQFYIFIPSKY 304
Query: 382 KIVYLLECLQKTPP-PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K YL+ L + ++FC + + L G+ A+ +HG Q +R A++ F
Sbjct: 305 KDCYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKF 364
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
K+ + VL+ATDVAS+GLD P + VIN+D+P ++Y+HR+GRT R G++G + TF+ +
Sbjct: 365 KSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 424
Query: 501 NQSE 504
E
Sbjct: 425 YDVE 428
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 132/380 (34%), Positives = 197/380 (51%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F+ F ++ ++A G +PTPIQ Q +P +L G D+IG+A TG+GKT + L
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY-PDLRTLLCIGG 262
P L++ P+RELA Q + E F R G +R GG
Sbjct: 62 KMLST-------PRGRVRTLVLAPTRELACQ---IAESF----RSLGQRARIRECSIYGG 107
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322
V+M Q+ ++ GV +VVA PGRL D + + +++ L +DEADR+ D+GF+ DI+
Sbjct: 108 VNMDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQS 167
Query: 323 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382
+ QTLLFSATMP +++ PVT+ +G A+ V V VK K
Sbjct: 168 ILKCLVQPHQTLLFSATMPPEVRKLTLETQTNPVTIQIGTQAPAS-SVSHSVYPVKNHQK 226
Query: 383 IVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441
L+E L+ T VLIF K +++ + + G ++ G Q R + F+
Sbjct: 227 TPLLIEILKTTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFR 286
Query: 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501
G +LVATD+A++GLD I HVINYDMP E+Y HRIGRTGR +TG A + +
Sbjct: 287 RGNFKILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGR 346
Query: 502 QSETTLLDLKHLLQEAKQRI 521
+ + D++ L+ QR+
Sbjct: 347 DGDM-VRDIQKLINSPIQRL 365
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 133/417 (31%), Positives = 215/417 (51%)
Query: 118 SKKACDLIRKQWHIIVDGED--IPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175
S L+R++ I V G+ +PPP+ F P +L L+ G PTPIQ+Q +P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 176 VVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQT 235
L+G+ ++ A TGSGKT F++ P +++ P+REL Q
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQ- 201
Query: 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295
V +Q M G P +T L +GG M QL +++GV +++ TPGR+ D+L+K +
Sbjct: 202 --VEDQ--AKMLGKGLP-FKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTI 256
Query: 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKP 355
LDN LDE D ++ GF D + ++F +Q Q LLFSAT+ +++ S +
Sbjct: 257 ELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEI 315
Query: 356 VTVNVGRAGAANLDVIQEVEYV--KQEA-KIVYLLECLQKTPPPVLIFCENKADVDDIHE 412
+ V++G N V Q +V KQ+ K+ +L PP +++ ++ D +
Sbjct: 316 ILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLAN 375
Query: 413 YL-LLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471
+ ++ GV+A+++HG K +ER + SF G+ VLV+T V +G+D ++ VI +DM
Sbjct: 376 AITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDM 435
Query: 472 PAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528
P+ I+ Y+H IGR R G+ G A F+N++ DL L+ + IP L L
Sbjct: 436 PSTIKEYIHVIGRASRMGEKGTAIVFVNEDD-RNLFPDLVAALKSSGAAIPKELINL 491
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 129/394 (32%), Positives = 209/394 (53%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
+ +F ++ P+ +L G V PTP+Q +P VLSGRD++ A TGSGKT F L
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
G CL++ P+RELA+Q V + FL+ L+ + G
Sbjct: 68 LQRLSEAKSADKSA-GVVR-CLVLVPTRELAQQ---VADSFLSYASHFN-GQLKIVAAFG 121
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
GV + Q++ ++ G ++VATPGRL D+LA + L LDEADR++ LGF +++
Sbjct: 122 GVSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELE 181
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381
+V Q+QTLLFSAT P +++ L +P+ ++ + ++ Q V V +E
Sbjct: 182 QVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIE--QRVITVNREQ 239
Query: 382 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K L +++ LIF K + + + L +G+ A HG K Q R + F
Sbjct: 240 KTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGF 299
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
K G+ VL+ATD+A++G+D + VIN+D+P +Y+HRIGR+GR G+ G+A T I+
Sbjct: 300 KNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISH 359
Query: 501 NQ-SETTLLDLKHLLQEAKQRIPPVLAELNDPME 533
+ +++ K+ ++ +++IP A P+E
Sbjct: 360 EEYHHFGVIEKKNKIKLVREQIPGFEANAEIPLE 393
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 129/394 (32%), Positives = 209/394 (53%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
+ +F ++ P+ +L G V PTP+Q +P VLSGRD++ A TGSGKT F L
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 202 XXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261
G CL++ P+RELA+Q V + FL+ L+ + G
Sbjct: 68 LQRLSEAKSADKSA-GVVR-CLVLVPTRELAQQ---VADSFLSYASHFN-GQLKIVAAFG 121
Query: 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321
GV + Q++ ++ G ++VATPGRL D+LA + L LDEADR++ LGF +++
Sbjct: 122 GVSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELE 181
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381
+V Q+QTLLFSAT P +++ L +P+ ++ + ++ Q V V +E
Sbjct: 182 QVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIE--QRVITVNREQ 239
Query: 382 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K L +++ LIF K + + + L +G+ A HG K Q R + F
Sbjct: 240 KTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGF 299
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
K G+ VL+ATD+A++G+D + VIN+D+P +Y+HRIGR+GR G+ G+A T I+
Sbjct: 300 KNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISH 359
Query: 501 NQ-SETTLLDLKHLLQEAKQRIPPVLAELNDPME 533
+ +++ K+ ++ +++IP A P+E
Sbjct: 360 EEYHHFGVIEKKNKIKLVREQIPGFEANAEIPLE 393
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 532 (192.3 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 137/425 (32%), Positives = 220/425 (51%)
Query: 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXX 202
K FK++ +L+ +++ +PTPIQ + +P L G+D+IG+A TGSGKT F +
Sbjct: 123 KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182
Query: 203 XXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
+ F L++ P+REL T+++ + F G LR+ +GG
Sbjct: 183 QSLWHAQ--------QPYFALVLAPTREL---TFQIKDTFDALGSSMG---LRSSCIVGG 228
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGFEDDIR 321
+DM Q + R H++VATPGR+ D L K +L N +YL +DEADRL+D+ F +
Sbjct: 229 MDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALD 288
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381
++ +R T LFSATM KI+ R++L PV V V +++Q + V
Sbjct: 289 KILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGY 348
Query: 382 KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440
K L+ L + +++F A + G AV +HG Q +R +++ F
Sbjct: 349 KNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKF 408
Query: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500
K+ + ++LVATDVA++GLD P + VINYD+P + + Y+HR+GRT R G++G + + I +
Sbjct: 409 KSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 468
Query: 501 NQSETTLLDLKHLLQEA--KQRIPP--VLAELNDPMEDV--DAITNASGVKGCAYCGGLG 554
E L ++ +L + K+ PP VL L+ ++ +AI + GG
Sbjct: 469 YDLEM-YLRIESVLGKKLPKEDKPPKEVLDALHVHVDKATAEAIRQTKEIHDKRNGGGGR 527
Query: 555 HRIRD 559
R RD
Sbjct: 528 RRNRD 532
Score = 37 (18.1 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 39 LEKSKLAEVKPSLLVK--ASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAK 96
+ K K+ +K K A ++K+ + +Q Q+++ N ++ S +
Sbjct: 50 ITKKKVKSLKNLDYTKKLAEKIKQQALQKQQKQQKQQEQENANHNQTESSLSSSSSTTSS 109
Query: 97 GITYTDP 103
IT DP
Sbjct: 110 SITTIDP 116
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 142/434 (32%), Positives = 220/434 (50%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F D++ +L+ + G PT IQ +P +++G D++G+A TG+GKT F +
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
+ + P L++ P+RELA Q E ++ A L L GG
Sbjct: 75 ID--------ITSKVPQALVLVPTRELALQVAEAFGRY-----GAYLSQLNVLPIYGGSS 121
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
QL ++RG +VV TPGR+ D L + ++L +L LDEAD ++ +GF DD+ +
Sbjct: 122 YAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERIL 181
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
+Q LFSATMP I+ + L P V +A A + I + Y++ K+
Sbjct: 182 SETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTC-KAKTAVAENISQ-SYIQVARKMD 239
Query: 385 YLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443
L L+ P +++F K ++I E L +G A A+ G Q +RE I++ + G
Sbjct: 240 ALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDG 299
Query: 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503
D+LVATDVA++GLD I HV+NYD+P + E+YVHRIGRTGR G++G A F++ +
Sbjct: 300 DIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPREL 359
Query: 504 ETTLLDLKHLLQEAKQRIPPVLAELNDPM--EDVDAITNASGVKGCAYCGGLGHRIRDCP 561
K Q + P + ++N + D+ITNA G G L R+ +
Sbjct: 360 HLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIE----LFRRLVEEY 415
Query: 562 KLEHQKSMA-IASS 574
+ EH MA IA++
Sbjct: 416 EREHDVPMADIAAA 429
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 145/441 (32%), Positives = 226/441 (51%)
Query: 151 PEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXX 210
PE I+K L +KGI + PIQ L + GRDMIG A TG+GKTL F +
Sbjct: 113 PE-IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNA 171
Query: 211 XXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE 270
G P CL++ P+RELARQ V ++F R++ P L T+ GG + Q+
Sbjct: 172 KHGR--GRNPLCLVLAPTRELARQ---VEKEF----RESA-PSLDTICLYGGTPIGQQMR 221
Query: 271 VVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 330
+ GV + V TPGR+ D++ + +NL +++ LDEAD+++ +GF +D+ + + +
Sbjct: 222 QLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEK 281
Query: 331 RQTLLFSATMPTKIQNFARSALVKPVTVN-VGRAGAANLDVIQEVEYVKQE---AKIVYL 386
RQ+++FSATMP+ I++ + L P+TV+ VG + D I + A I+
Sbjct: 282 RQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGP 341
Query: 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446
L ++F + K D D + Y L + + A+HG Q +RE ++ F+ G +
Sbjct: 342 LVTEHAKGGKCIVFTQTKRDADRL-SYALARSFKCEALHGDISQSQRERTLAGFRDGHFN 400
Query: 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETT 506
+LVATDVA++GLD P++ +I+Y++P E +VHR GRTGR GK G A +++QS
Sbjct: 401 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAV 460
Query: 507 LLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQ 566
+ ++ + +P + E + I + SG G G +RD
Sbjct: 461 KI-IEREVGSRFTELPSIAVERGSASM-FEGIGSRSG-------GSFGGGMRD-----RG 506
Query: 567 KSMAIASSRRDYFGS-GGYRG 586
S S Y GS GGY G
Sbjct: 507 SSFGGRSGGGGYGGSSGGYGG 527
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 131/407 (32%), Positives = 217/407 (53%)
Query: 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXX 201
+K F ++ E ++K + G P+ IQ + LP L G+D+IG+A TGSGKT F +
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 202 XXXXXXXXXXXXXVPGEGP----FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTL 257
G P F ++ P+RELA Q + EQF D LR
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ---IAEQFEALGADIS---LRCA 121
Query: 258 LCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGF 316
+ +GG+D Q + + H++VATPGRL D ++ K +L + +YL LDEADRL++ F
Sbjct: 122 VLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDF 181
Query: 317 EDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI-QEVE 375
E + ++ + +R+T LFSATM K++ R+ L PV + + + +D + Q+
Sbjct: 182 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAA-SKYSTVDTLKQQYR 240
Query: 376 YVKQEAKIVYLLECLQKTPPPV-LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEERE 434
+V + K YL+ L + P +IF + L G A+ + G Q +R
Sbjct: 241 FVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRL 300
Query: 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA 494
A++ FKAG+ ++LV TDVAS+GLD P + VINYD+P ++Y+HR+GRT R G++G+
Sbjct: 301 GALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVG 360
Query: 495 TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNA 541
+ +N+ + E + ++ L+ + ++P AE ++ + ++ + A
Sbjct: 361 ISLVNQYELEW-YIQIEKLIGK---KLPEYPAEEDEVLSLLERVAEA 403
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 519 (187.8 bits), Expect = 3.6e-53, Sum P(2) = 3.6e-53
Identities = 133/403 (33%), Positives = 210/403 (52%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F DM P+LK + G QPTPIQ +PV L G+D+ A TG+GKT F+L
Sbjct: 203 FHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLER 262
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
L++ P+REL Q + V Q A + + T L +GG+D
Sbjct: 263 LIYKPRETQVTR-----VLVLVPTRELGIQVHTVARQL------AQFTTISTCLAVGGLD 311
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
++SQ ++ G +++ATPGRL D L L L LDEADR++D FE+ ++E+
Sbjct: 312 LKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEI 371
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV--EYV---- 377
QRQT+LFSATM ++++ A +L +PV + V +N DV + E+V
Sbjct: 372 IRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVN----SNTDVAPYLRQEFVRIRP 427
Query: 378 -KQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREY 435
K+ + + L +T V++F + K +H L L G++ +HG Q +R
Sbjct: 428 NKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLE 487
Query: 436 AISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495
++ FK + D+LVATDVA++GLD ++ VIN+ MP +++YVHR+GRT R GK G +
Sbjct: 488 SLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSV 547
Query: 496 TFINKNQSETTLLDLKHLLQEAKQRIPP--VLAELNDPMEDVD 536
+ + + + + +K K R+ P V+ + D +E ++
Sbjct: 548 SLVGETERKMLKEIVKKAKFPVKARVIPQEVILKFRDLIEKLE 590
Score = 55 (24.4 bits), Expect = 3.6e-53, Sum P(2) = 3.6e-53
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 36 EDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELA 95
EDE + +K + ++ Q K + TE + + ENL+ +S R L
Sbjct: 155 EDEFSSADEEVLKKADTLREKQKKGKRKMADTTEGFFEDASQYDENLTFHDMNLS-RPLL 213
Query: 96 KGITYTDPLLTGWKPPLPIRRMSKKAC 122
K I+ G+K P PI+ KAC
Sbjct: 214 KAIS-----TMGFKQPTPIQ----KAC 231
Score = 42 (19.8 bits), Expect = 8.3e-52, Sum P(2) = 8.3e-52
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 123 DLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAK 161
DLIR I D E++P + D +PI+ K K K
Sbjct: 2 DLIRT----IDDDEEVPEEPDSGSDDEADQPIVLKSKEK 36
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 549 (198.3 bits), Expect = 5.6e-53, P = 5.6e-53
Identities = 130/395 (32%), Positives = 218/395 (55%)
Query: 132 IVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGS 191
IV+ E++P F+++ P+LK ++ G QPTPIQ + +P+ L+G+D++ A TGS
Sbjct: 184 IVE-EELP----TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGS 238
Query: 192 GKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251
GKT F+L + LI+ P+RELA Q V+E A +
Sbjct: 239 GKTAAFLLPVLERLLFRDSEYRAIR-----VLILLPTRELALQCQSVMENL------AQF 287
Query: 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKD-MLAKKKMNLDNCRYLTLDEADR 310
++ + L +GG+ ++Q +++ +V+ATPGRL D +L + LD+ L LDEADR
Sbjct: 288 SNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADR 347
Query: 311 LVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDV 370
L+D+GF+D+I ++ + RQT+LFSAT+ +++ A+ +L +P+ V V +
Sbjct: 348 LLDMGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTL 407
Query: 371 IQEVEYVK----QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVH 425
QE +K + + L C + +IFC +K +V + L ++A +H
Sbjct: 408 EQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELH 467
Query: 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRT 485
G QE+R ++ F+ G+ + L+A+DVAS+GLD ++ VINY+MP + NY+HR+GRT
Sbjct: 468 GNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRT 527
Query: 486 GRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 520
R G G + +FI N + LK ++ +A+ +
Sbjct: 528 ARAGMDGKSCSFITDNDRKL----LKDIVTKARNK 558
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 124/376 (32%), Positives = 208/376 (55%)
Query: 114 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173
I + + + +++Q I+V G+D+ PI +F+ FPE + LK G PTPIQ+Q
Sbjct: 175 ILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQM 234
Query: 174 LPVVLSGRDMIGIAFTGSGKTLVFVLXXXXXXXXXXXXXXXVPGEGPFCLIVCPSRELAR 233
+PV L GRD++ A TGSGKT F+L + P LI+ P+RELA
Sbjct: 235 IPVGLLGRDVLASADTGSGKTAAFLLPVITRAL--------CESKTPSALILTPTRELAI 286
Query: 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293
Q ++ ++ G P ++T+L +GG+ + QL +++ V +++ATPGRL D++ +
Sbjct: 287 QIENQAKELMS-----GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQS 341
Query: 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 353
+ L + + +DEAD ++ +GF+ + ++ +H QT+L SAT+PT I+ A L
Sbjct: 342 SVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLH 401
Query: 354 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTP---PPVLIFCENKADVDDI 410
PV + G V Q + +V++ AK L E L PPVL+F + K D +
Sbjct: 402 NPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLL 461
Query: 411 HEYLL-LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469
E + + G+++V++H K Q ER+ + G +V+V+T V +GLD ++ V+N+
Sbjct: 462 SEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNF 521
Query: 470 DMPAEIENYVHRIGRT 485
DMP+ ++ YVH++ RT
Sbjct: 522 DMPSSMDEYVHQV-RT 536
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 129/381 (33%), Positives = 204/381 (53%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F +LK + +PT IQ Q +P++L+ D++ A TG+GKT F L
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
+ L++ P+RELA+Q ++ + + D+ + GGV
Sbjct: 67 LISVQPCKPELRA-----LVLTPTRELAQQVHKSFCHY------GQFTDVTIGIAYGGVS 115
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K GV I++ATPGRL D+L + ++L N L DEADR++D+GF+++I ++
Sbjct: 116 TKKQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQIT 175
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
+ +QTLLFSAT I +++ LV+P V + A DV Q V V + K
Sbjct: 176 QYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRE 235
Query: 385 YLLECL-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443
+ + VL+F K DD+ + + GV+++A+HG K Q RE A+ FK G
Sbjct: 236 LTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEG 295
Query: 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503
K L+ATDVA++G+D + HVINY++P E+YVHRIGRT R G +G+A + ++ +
Sbjct: 296 KVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE- 354
Query: 504 ETTLLDLKHLL--QEAKQRIP 522
E L ++ LL Q +Q +P
Sbjct: 355 EWLLTAIEELLDIQLLQQWLP 375
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 129/381 (33%), Positives = 204/381 (53%)
Query: 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXXX 204
F +LK + +PT IQ Q +P++L+ D++ A TG+GKT F L
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 205 XXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264
+ L++ P+RELA+Q ++ + + D+ + GGV
Sbjct: 67 LISVQPCKPELRA-----LVLTPTRELAQQVHKSFCHY------GQFTDVTIGIAYGGVS 115
Query: 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324
+ Q+ +K GV I++ATPGRL D+L + ++L N L DEADR++D+GF+++I ++
Sbjct: 116 TKKQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQIT 175
Query: 325 DHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384
+ +QTLLFSAT I +++ LV+P V + A DV Q V V + K
Sbjct: 176 QYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRE 235
Query: 385 YLLECL-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443
+ + VL+F K DD+ + + GV+++A+HG K Q RE A+ FK G
Sbjct: 236 LTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEG 295
Query: 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503
K L+ATDVA++G+D + HVINY++P E+YVHRIGRT R G +G+A + ++ +
Sbjct: 296 KVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE- 354
Query: 504 ETTLLDLKHLL--QEAKQRIP 522
E L ++ LL Q +Q +P
Sbjct: 355 EWLLTAIEELLDIQLLQQWLP 375
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 129/376 (34%), Positives = 206/376 (54%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F + + +++ + G +PT IQ Q +PV+L GRD+I A TG+GKT FVL
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
+ LI+ P+RELA Q E VEQ+ +D G L++L GGV
Sbjct: 62 KLRQGQTQRK----KRVRALILVPTRELAMQVAEKVEQY---GKDTG---LKSLAVFGGV 111
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
D ++Q + + GV ++VATPGRL D+ ++ + + + LDEADR++D+GF + I ++
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKI 171
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
D ++ Q LLFSAT+ K++ A++A+ P +++ A+ ++ Q + V ++ K
Sbjct: 172 IDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKS 231
Query: 384 VYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L + + LIF E K + L +G+ A A H G+ Q R + FK+
Sbjct: 232 ALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK-N 501
GK LVAT VA++G+D + V+NYD+P + YVHRIGRTGR G A +F++K N
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Query: 502 QSETTLLD--LKHLLQ 515
+++ L HL++
Sbjct: 352 FKNLCMIESRLGHLIE 367
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 129/376 (34%), Positives = 206/376 (54%)
Query: 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXXX 203
+F + + +++ + G +PT IQ Q +PV+L GRD+I A TG+GKT FVL
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 204 XXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263
+ LI+ P+RELA Q E VEQ+ +D G L++L GGV
Sbjct: 62 KLRQGQTQRK----KRVRALILVPTRELAMQVAEKVEQY---GKDTG---LKSLAVFGGV 111
Query: 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323
D ++Q + + GV ++VATPGRL D+ ++ + + + LDEADR++D+GF + I ++
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKI 171
Query: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383
D ++ Q LLFSAT+ K++ A++A+ P +++ A+ ++ Q + V ++ K
Sbjct: 172 IDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKS 231
Query: 384 VYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442
L + + LIF E K + L +G+ A A H G+ Q R + FK+
Sbjct: 232 ALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK-N 501
GK LVAT VA++G+D + V+NYD+P + YVHRIGRTGR G A +F++K N
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Query: 502 QSETTLLD--LKHLLQ 515
+++ L HL++
Sbjct: 352 FKNLCMIESRLGHLIE 367
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 135/404 (33%), Positives = 221/404 (54%)
Query: 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLXXX 202
K FKD+ + + + G +PT IQ++ +P+ L GRD+IG+A TGSGKT F L
Sbjct: 50 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 203 XXXXXXXXXXXXVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262
P + F L++ P+RELA +++ EQF G +++ + +GG
Sbjct: 110 NALLET-------P-QRLFALVLTPTRELA---FQISEQFEALGSSIG---VQSAVIVGG 155
Query: 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGFEDDIR 321
+D SQ + + HIV+ATPGRL D L K NL +YL +DEADR++++ FE ++
Sbjct: 156 IDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVD 215
Query: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE-YVKQE 380
++ R+T LFSATM K+Q R+AL PV V + ++ +Q+ ++ +
Sbjct: 216 KILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSK 274
Query: 381 AKIVYLLECLQKTPP-PVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAI 437
K YL+ L + +IFC + LLL+ G A+ +HG Q +R ++
Sbjct: 275 FKDTYLVYILNELAGNSFMIFCSTCNNTQ--RTALLLRNLGFTAIPLHGQMSQSKRLGSL 332
Query: 438 SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 497
+ FKA + +L+ATDVAS+GLD P + V+N+D+P ++Y+HR+GRT R G++G A TF
Sbjct: 333 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 392
Query: 498 INKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNA 541
+ + E ++HL+ + ++P + ++ M + +T A
Sbjct: 393 VTQYDVEL-FQRIEHLIGK---KLPVFPTQDDEVMMLTERVTEA 432
WARNING: HSPs involving 715 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 588 573 0.00080 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 965
No. of states in DFA: 614 (65 KB)
Total size of DFA: 290 KB (2151 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.20u 0.10s 52.30t Elapsed: 00:00:02
Total cpu time: 52.27u 0.10s 52.37t Elapsed: 00:00:03
Start: Fri May 10 22:05:58 2013 End: Fri May 10 22:06:01 2013
WARNINGS ISSUED: 2