Query 007831
Match_columns 588
No_of_seqs 511 out of 3412
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0341 DEAD-box protein abstr 100.0 5E-138 1E-142 998.6 34.4 581 2-583 18-610 (610)
2 KOG0331 ATP-dependent RNA heli 100.0 2.1E-80 4.5E-85 640.6 37.4 411 112-531 30-477 (519)
3 KOG0333 U5 snRNP-like RNA heli 100.0 9.6E-80 2.1E-84 615.5 33.4 419 105-531 208-654 (673)
4 KOG0339 ATP-dependent RNA heli 100.0 3.8E-77 8.1E-82 593.7 35.1 452 96-557 176-632 (731)
5 PTZ00110 helicase; Provisional 100.0 2.3E-72 5.1E-77 611.2 47.9 417 105-531 91-513 (545)
6 KOG0336 ATP-dependent RNA heli 100.0 6.2E-74 1.3E-78 557.4 29.8 421 103-533 171-603 (629)
7 KOG0330 ATP-dependent RNA heli 100.0 1.2E-72 2.6E-77 547.0 30.1 360 141-515 59-420 (476)
8 PLN00206 DEAD-box ATP-dependen 100.0 9E-70 1.9E-74 589.4 46.9 415 106-529 83-502 (518)
9 KOG0335 ATP-dependent RNA heli 100.0 5.9E-71 1.3E-75 560.5 30.9 392 132-530 63-472 (482)
10 KOG0338 ATP-dependent RNA heli 100.0 8.4E-71 1.8E-75 549.1 30.7 360 142-513 180-544 (691)
11 KOG0334 RNA helicase [RNA proc 100.0 4.1E-70 8.9E-75 589.8 34.9 429 95-533 316-751 (997)
12 COG0513 SrmB Superfamily II DN 100.0 2.1E-68 4.6E-73 574.8 40.9 364 143-517 29-396 (513)
13 KOG0328 Predicted ATP-dependen 100.0 4E-67 8.7E-72 488.0 28.1 374 139-527 23-398 (400)
14 KOG0342 ATP-dependent RNA heli 100.0 4E-65 8.6E-70 508.8 29.3 362 142-513 81-448 (543)
15 PRK04837 ATP-dependent RNA hel 100.0 1.4E-63 2.9E-68 531.2 41.8 364 142-513 7-373 (423)
16 KOG0345 ATP-dependent RNA heli 100.0 2.5E-63 5.4E-68 492.4 35.1 350 144-501 5-364 (567)
17 PRK10590 ATP-dependent RNA hel 100.0 1.8E-62 4E-67 526.0 42.0 363 144-515 2-365 (456)
18 PRK11776 ATP-dependent RNA hel 100.0 5.7E-62 1.2E-66 524.3 41.7 357 143-514 4-361 (460)
19 PRK04537 ATP-dependent RNA hel 100.0 8.5E-62 1.8E-66 530.1 42.8 364 143-514 9-376 (572)
20 PRK11634 ATP-dependent RNA hel 100.0 7.1E-62 1.5E-66 533.4 41.2 355 143-511 6-361 (629)
21 KOG0340 ATP-dependent RNA heli 100.0 5.6E-63 1.2E-67 474.3 27.5 346 142-501 6-361 (442)
22 KOG0343 RNA Helicase [RNA proc 100.0 9.4E-63 2E-67 495.6 29.2 360 142-512 68-433 (758)
23 KOG0326 ATP-dependent RNA heli 100.0 4.9E-64 1.1E-68 474.6 17.1 367 142-524 84-451 (459)
24 PRK11192 ATP-dependent RNA hel 100.0 3E-60 6.5E-65 507.8 43.0 360 144-514 2-364 (434)
25 KOG0348 ATP-dependent RNA heli 100.0 6.7E-61 1.5E-65 480.8 28.9 363 142-512 135-564 (708)
26 PRK01297 ATP-dependent RNA hel 100.0 7E-59 1.5E-63 501.6 42.3 367 141-515 85-455 (475)
27 KOG0346 RNA helicase [RNA proc 100.0 8E-60 1.7E-64 463.4 29.1 368 143-517 19-425 (569)
28 PTZ00424 helicase 45; Provisio 100.0 6E-57 1.3E-61 478.5 39.7 358 142-514 27-386 (401)
29 KOG0347 RNA helicase [RNA proc 100.0 2.8E-59 6E-64 470.6 18.5 370 140-516 178-584 (731)
30 KOG0327 Translation initiation 100.0 1.2E-56 2.6E-61 437.3 23.2 368 143-526 26-394 (397)
31 KOG0344 ATP-dependent RNA heli 100.0 3.1E-56 6.8E-61 455.3 26.5 401 122-530 111-523 (593)
32 KOG0332 ATP-dependent RNA heli 100.0 7.3E-56 1.6E-60 427.6 27.0 370 141-527 88-470 (477)
33 KOG0337 ATP-dependent RNA heli 100.0 2.5E-56 5.5E-61 436.8 20.3 360 142-515 20-381 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 5.2E-53 1.1E-57 472.2 39.8 343 138-501 7-386 (742)
35 KOG4284 DEAD box protein [Tran 100.0 5.4E-54 1.2E-58 438.5 24.0 353 137-503 19-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 2.9E-51 6.2E-56 454.6 40.6 331 144-501 436-787 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 3.4E-50 7.4E-55 432.4 36.6 311 162-501 8-333 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 7.2E-51 1.6E-55 406.2 22.5 348 152-512 146-551 (620)
39 PRK11057 ATP-dependent DNA hel 100.0 6.7E-48 1.5E-52 425.2 39.3 322 150-501 9-343 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 6.7E-48 1.4E-52 426.4 38.5 316 156-501 3-331 (591)
41 PRK13767 ATP-dependent helicas 100.0 7.1E-47 1.5E-51 431.0 37.9 348 150-501 18-398 (876)
42 PRK02362 ski2-like helicase; P 100.0 3.2E-47 6.9E-52 430.1 33.5 334 144-501 2-397 (737)
43 PRK00254 ski2-like helicase; P 100.0 3.9E-46 8.5E-51 420.2 35.5 336 144-501 2-388 (720)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-45 2.8E-50 404.7 34.3 323 156-500 6-390 (844)
45 KOG0329 ATP-dependent RNA heli 100.0 8.2E-48 1.8E-52 354.0 13.5 335 142-524 41-378 (387)
46 COG0514 RecQ Superfamily II DN 100.0 1.1E-45 2.5E-50 389.5 31.6 321 156-502 7-338 (590)
47 TIGR00580 mfd transcription-re 100.0 7.7E-44 1.7E-48 401.8 42.4 321 150-501 436-770 (926)
48 PRK10917 ATP-dependent DNA hel 100.0 6.3E-43 1.4E-47 389.7 42.5 373 152-563 248-642 (681)
49 PRK01172 ski2-like helicase; P 100.0 2.3E-43 5E-48 396.0 35.0 333 144-501 2-378 (674)
50 TIGR00643 recG ATP-dependent D 100.0 2.5E-42 5.4E-47 382.5 41.8 372 153-563 224-619 (630)
51 PRK10689 transcription-repair 100.0 1.3E-42 2.9E-47 399.8 40.9 316 155-501 591-919 (1147)
52 COG1201 Lhr Lhr-like helicases 100.0 1.5E-42 3.3E-47 378.4 32.8 339 150-501 8-362 (814)
53 PRK09401 reverse gyrase; Revie 100.0 5.4E-42 1.2E-46 395.5 33.8 303 155-487 70-430 (1176)
54 PRK09751 putative ATP-dependen 100.0 6.8E-41 1.5E-45 387.1 35.5 310 185-498 1-382 (1490)
55 PRK14701 reverse gyrase; Provi 100.0 4.2E-40 9.1E-45 387.1 34.2 318 152-495 66-450 (1638)
56 PHA02653 RNA helicase NPH-II; 100.0 2E-39 4.4E-44 354.4 31.7 311 167-502 166-515 (675)
57 KOG0349 Putative DEAD-box RNA 100.0 3E-40 6.4E-45 324.1 19.0 279 220-501 287-615 (725)
58 PRK12898 secA preprotein trans 100.0 7.1E-39 1.5E-43 344.6 30.3 314 162-501 101-586 (656)
59 PHA02558 uvsW UvsW helicase; P 100.0 3.3E-38 7.1E-43 341.3 33.2 306 163-498 112-449 (501)
60 TIGR01587 cas3_core CRISPR-ass 100.0 9.1E-39 2E-43 333.9 27.9 296 182-501 1-336 (358)
61 TIGR01054 rgy reverse gyrase. 100.0 4.7E-38 1E-42 363.5 33.3 293 152-473 65-409 (1171)
62 COG1202 Superfamily II helicas 100.0 1.4E-38 2.9E-43 322.7 24.5 335 144-501 195-553 (830)
63 COG1111 MPH1 ERCC4-like helica 100.0 3.1E-37 6.6E-42 311.5 33.7 320 163-501 13-481 (542)
64 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.9E-38 2.1E-42 349.0 33.1 302 170-501 7-336 (819)
65 PRK09200 preprotein translocas 100.0 9.5E-38 2.1E-42 342.8 29.7 316 162-502 76-542 (790)
66 KOG0352 ATP-dependent DNA heli 100.0 3.6E-38 7.8E-43 309.3 23.1 324 153-502 6-363 (641)
67 COG1204 Superfamily II helicas 100.0 1.2E-37 2.5E-42 345.0 29.5 333 147-501 13-408 (766)
68 COG1205 Distinct helicase fami 100.0 4.6E-37 1E-41 344.8 33.6 342 151-507 56-428 (851)
69 PRK11664 ATP-dependent RNA hel 100.0 3.4E-37 7.3E-42 345.6 31.2 302 170-501 10-339 (812)
70 KOG0351 ATP-dependent DNA heli 100.0 2.8E-37 6.1E-42 343.8 25.2 322 152-501 250-592 (941)
71 TIGR00963 secA preprotein tran 100.0 1.6E-36 3.5E-41 327.9 29.4 315 162-502 54-518 (745)
72 TIGR03714 secA2 accessory Sec 100.0 3.2E-36 6.9E-41 327.6 30.0 314 165-502 70-538 (762)
73 KOG0353 ATP-dependent DNA heli 100.0 1.8E-36 4E-41 293.1 24.6 331 145-501 73-467 (695)
74 PRK13766 Hef nuclease; Provisi 100.0 6E-35 1.3E-39 333.9 36.8 321 163-502 13-480 (773)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 5.4E-35 1.2E-39 302.8 31.0 293 169-486 1-357 (357)
76 COG1200 RecG RecG-like helicas 100.0 3.3E-34 7.1E-39 301.6 32.0 371 151-563 248-644 (677)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 1.4E-34 3.1E-39 311.3 23.4 326 162-501 107-491 (1230)
78 KOG0354 DEAD-box like helicase 100.0 2.4E-33 5.2E-38 299.2 27.4 318 163-500 60-528 (746)
79 TIGR00603 rad25 DNA repair hel 100.0 7.8E-33 1.7E-37 301.3 27.6 318 164-517 254-624 (732)
80 PRK04914 ATP-dependent helicas 100.0 3.3E-32 7.2E-37 306.2 30.7 396 164-586 151-686 (956)
81 PRK05580 primosome assembly pr 100.0 4.2E-31 9.1E-36 293.7 37.1 309 164-501 143-549 (679)
82 PRK11131 ATP-dependent RNA hel 100.0 4.3E-32 9.3E-37 309.1 29.4 294 170-501 79-411 (1294)
83 cd00268 DEADc DEAD-box helicas 100.0 1.1E-30 2.3E-35 250.7 24.8 202 145-358 1-202 (203)
84 KOG0951 RNA helicase BRR2, DEA 100.0 1E-30 2.3E-35 284.6 24.9 382 149-556 295-750 (1674)
85 PRK09694 helicase Cas3; Provis 100.0 6.1E-29 1.3E-33 278.3 36.5 310 163-490 284-664 (878)
86 PRK13104 secA preprotein trans 100.0 9.8E-30 2.1E-34 278.9 28.7 314 164-502 81-588 (896)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1E-29 2.2E-34 290.8 27.5 297 172-501 74-404 (1283)
88 KOG0947 Cytoplasmic exosomal R 100.0 1.4E-29 3E-34 269.9 23.7 310 162-501 295-723 (1248)
89 COG1197 Mfd Transcription-repa 100.0 2.3E-28 4.9E-33 271.0 34.0 321 151-501 580-913 (1139)
90 COG1061 SSL2 DNA or RNA helica 100.0 4.1E-29 8.8E-34 265.3 27.1 291 163-487 34-375 (442)
91 PRK12904 preprotein translocas 100.0 4.5E-29 9.7E-34 273.6 28.0 315 162-502 79-574 (830)
92 TIGR00595 priA primosomal prot 100.0 1.3E-28 2.9E-33 264.4 30.6 287 184-499 1-379 (505)
93 PRK12899 secA preprotein trans 100.0 3.2E-28 6.9E-33 266.3 30.9 148 146-312 65-228 (970)
94 PRK12906 secA preprotein trans 100.0 1.7E-28 3.6E-33 268.1 27.1 314 164-502 79-554 (796)
95 KOG0948 Nuclear exosomal RNA h 100.0 3.6E-29 7.8E-34 260.8 17.8 316 164-507 128-545 (1041)
96 PLN03142 Probable chromatin-re 100.0 5E-27 1.1E-31 265.3 29.1 315 165-501 169-599 (1033)
97 COG4581 Superfamily II RNA hel 100.0 3.1E-27 6.7E-32 262.0 25.2 318 159-501 114-537 (1041)
98 KOG0950 DNA polymerase theta/e 100.0 4.5E-27 9.8E-32 252.9 20.8 332 149-502 207-612 (1008)
99 PRK13107 preprotein translocas 99.9 1.8E-26 3.9E-31 252.4 24.8 313 165-502 82-592 (908)
100 PRK11448 hsdR type I restricti 99.9 5.4E-26 1.2E-30 261.7 29.3 305 164-489 412-801 (1123)
101 COG4098 comFA Superfamily II D 99.9 6.6E-25 1.4E-29 211.4 29.5 299 164-500 96-415 (441)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 3.8E-26 8.2E-31 212.3 19.6 165 167-346 1-168 (169)
103 KOG0385 Chromatin remodeling c 99.9 6.3E-25 1.4E-29 230.3 24.2 315 165-501 167-599 (971)
104 COG1203 CRISPR-associated heli 99.9 1.1E-22 2.4E-27 228.7 25.5 319 166-501 196-550 (733)
105 TIGR00631 uvrb excinuclease AB 99.9 2.7E-21 5.8E-26 212.9 34.3 110 391-501 439-553 (655)
106 PRK12900 secA preprotein trans 99.9 8.8E-23 1.9E-27 224.4 22.1 126 375-502 576-712 (1025)
107 KOG0384 Chromodomain-helicase 99.9 7.1E-23 1.5E-27 224.6 15.9 366 106-502 314-812 (1373)
108 COG1110 Reverse gyrase [DNA re 99.9 1.1E-21 2.5E-26 212.4 23.3 288 153-472 70-416 (1187)
109 PRK05298 excinuclease ABC subu 99.9 2.6E-20 5.7E-25 206.6 31.1 134 391-525 443-589 (652)
110 KOG0387 Transcription-coupled 99.9 3.7E-21 8.1E-26 203.2 22.4 324 148-501 196-658 (923)
111 TIGR01407 dinG_rel DnaQ family 99.9 7.4E-20 1.6E-24 210.0 31.7 332 151-501 232-814 (850)
112 PRK12326 preprotein translocas 99.9 6E-20 1.3E-24 197.0 28.2 314 162-502 76-548 (764)
113 COG1643 HrpA HrpA-like helicas 99.9 5.9E-20 1.3E-24 203.3 27.3 307 168-501 53-387 (845)
114 COG1198 PriA Primosomal protei 99.9 2.4E-19 5.1E-24 195.8 30.1 311 163-501 196-603 (730)
115 TIGR00348 hsdR type I site-spe 99.9 1.9E-19 4.1E-24 200.5 28.7 296 166-488 239-634 (667)
116 COG4096 HsdR Type I site-speci 99.8 4.5E-20 9.6E-25 197.5 21.2 293 164-488 164-525 (875)
117 smart00487 DEXDc DEAD-like hel 99.8 1.5E-19 3.3E-24 171.6 21.1 187 161-362 4-192 (201)
118 PRK13103 secA preprotein trans 99.8 2.8E-19 6E-24 196.5 24.6 313 164-502 81-592 (913)
119 KOG0949 Predicted helicase, DE 99.8 2.9E-19 6.3E-24 191.9 22.4 160 165-342 511-673 (1330)
120 KOG0389 SNF2 family DNA-depend 99.8 4.1E-19 8.8E-24 187.7 23.1 319 165-504 399-891 (941)
121 KOG4150 Predicted ATP-dependen 99.8 1.8E-19 4E-24 183.4 19.0 328 156-501 277-640 (1034)
122 KOG2340 Uncharacterized conser 99.8 2.5E-19 5.4E-24 181.6 18.0 337 164-501 215-668 (698)
123 COG0556 UvrB Helicase subunit 99.8 4.7E-18 1E-22 173.2 25.5 164 330-501 386-557 (663)
124 KOG0390 DNA repair protein, SN 99.8 3E-18 6.4E-23 186.1 25.7 322 164-501 237-707 (776)
125 PRK12903 secA preprotein trans 99.8 6.2E-18 1.3E-22 184.0 25.5 314 162-502 76-540 (925)
126 PF06862 DUF1253: Protein of u 99.8 6E-18 1.3E-22 174.9 24.0 283 218-501 36-415 (442)
127 KOG0922 DEAH-box RNA helicase 99.8 9.2E-18 2E-22 176.1 24.4 304 167-502 53-391 (674)
128 KOG0392 SNF2 family DNA-depend 99.8 5.2E-18 1.1E-22 186.1 22.6 331 166-514 976-1467(1549)
129 PRK07246 bifunctional ATP-depe 99.8 1.2E-16 2.5E-21 181.3 31.4 316 162-501 243-783 (820)
130 KOG1000 Chromatin remodeling p 99.8 6.7E-18 1.4E-22 170.0 18.0 308 163-496 196-596 (689)
131 CHL00122 secA preprotein trans 99.8 7.5E-17 1.6E-21 176.7 25.4 274 162-461 74-491 (870)
132 cd00079 HELICc Helicase superf 99.8 1.6E-17 3.5E-22 147.0 14.0 117 381-497 12-131 (131)
133 KOG0923 mRNA splicing factor A 99.7 4.5E-17 9.8E-22 169.1 18.9 307 164-501 264-606 (902)
134 KOG0920 ATP-dependent RNA heli 99.7 1.2E-16 2.7E-21 176.4 23.6 311 167-501 175-544 (924)
135 PF00271 Helicase_C: Helicase 99.7 6.1E-18 1.3E-22 135.6 8.6 78 412-489 1-78 (78)
136 KOG0924 mRNA splicing factor A 99.7 1.9E-16 4.2E-21 164.7 21.8 302 167-501 358-697 (1042)
137 KOG0386 Chromatin remodeling c 99.7 2.1E-17 4.6E-22 178.8 15.1 315 165-500 394-835 (1157)
138 KOG1123 RNA polymerase II tran 99.7 2.1E-17 4.6E-22 166.5 13.5 304 164-502 301-654 (776)
139 PRK12902 secA preprotein trans 99.7 7.9E-16 1.7E-20 168.4 26.4 272 165-461 85-506 (939)
140 COG4889 Predicted helicase [Ge 99.7 6.5E-18 1.4E-22 179.4 9.7 334 144-498 141-583 (1518)
141 TIGR03117 cas_csf4 CRISPR-asso 99.7 8.2E-15 1.8E-19 159.3 33.8 124 382-507 458-622 (636)
142 KOG0953 Mitochondrial RNA heli 99.7 6.1E-17 1.3E-21 165.5 15.9 278 179-515 190-486 (700)
143 KOG0926 DEAH-box RNA helicase 99.7 1.2E-15 2.7E-20 161.3 23.5 305 171-501 262-704 (1172)
144 PRK08074 bifunctional ATP-depe 99.7 6.6E-15 1.4E-19 170.0 31.2 114 388-501 746-893 (928)
145 cd00046 DEXDc DEAD-like helica 99.7 1.3E-15 2.8E-20 135.9 16.2 144 181-340 1-144 (144)
146 KOG0951 RNA helicase BRR2, DEA 99.7 2.9E-15 6.3E-20 165.1 21.0 307 163-501 1141-1494(1674)
147 KOG0388 SNF2 family DNA-depend 99.6 5.9E-15 1.3E-19 154.2 18.8 120 382-501 1032-1154(1185)
148 PF04851 ResIII: Type III rest 99.6 1.4E-15 3.1E-20 142.9 11.0 159 165-342 3-184 (184)
149 KOG0391 SNF2 family DNA-depend 99.6 2.7E-14 5.8E-19 155.9 19.9 119 383-501 1265-1387(1958)
150 smart00490 HELICc helicase sup 99.6 4.2E-15 9E-20 119.9 9.3 81 409-489 2-82 (82)
151 COG1199 DinG Rad3-related DNA 99.6 4.2E-13 9E-18 151.3 27.4 116 383-501 468-617 (654)
152 KOG0925 mRNA splicing factor A 99.6 2E-13 4.2E-18 137.9 21.0 325 142-501 24-387 (699)
153 KOG1002 Nucleotide excision re 99.6 5.5E-13 1.2E-17 134.7 22.3 109 394-502 638-750 (791)
154 PRK12901 secA preprotein trans 99.6 2.6E-13 5.7E-18 150.3 21.3 125 375-502 606-742 (1112)
155 PRK11747 dinG ATP-dependent DN 99.5 8.8E-12 1.9E-16 139.9 32.8 105 393-501 533-674 (697)
156 TIGR02562 cas3_yersinia CRISPR 99.5 1.3E-12 2.9E-17 145.5 25.1 316 156-490 399-881 (1110)
157 TIGR00604 rad3 DNA repair heli 99.5 4.9E-12 1.1E-16 143.0 29.5 133 387-529 515-692 (705)
158 KOG4439 RNA polymerase II tran 99.5 2E-12 4.3E-17 135.9 20.8 110 392-501 744-858 (901)
159 PRK14873 primosome assembly pr 99.5 6.1E-12 1.3E-16 138.8 25.9 272 188-501 168-539 (665)
160 COG0553 HepA Superfamily II DN 99.4 1.9E-11 4.2E-16 142.8 24.4 113 389-501 704-822 (866)
161 KOG1015 Transcription regulato 99.4 4.2E-11 9E-16 129.2 24.0 106 392-497 1140-1271(1567)
162 PF02399 Herpes_ori_bp: Origin 99.4 3.5E-11 7.5E-16 131.2 20.7 286 183-501 52-388 (824)
163 PF07652 Flavi_DEAD: Flaviviru 99.3 1.9E-11 4E-16 106.5 8.3 136 180-345 4-141 (148)
164 PF00176 SNF2_N: SNF2 family N 99.2 1.6E-10 3.4E-15 117.6 14.3 157 169-341 1-173 (299)
165 COG0653 SecA Preprotein transl 99.2 9.2E-10 2E-14 121.0 20.1 311 165-501 80-545 (822)
166 smart00489 DEXDc3 DEAD-like he 99.1 2E-09 4.4E-14 108.2 13.9 73 165-242 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.1 2E-09 4.4E-14 108.2 13.9 73 165-242 8-84 (289)
168 COG0610 Type I site-specific r 99.0 5.8E-08 1.3E-12 112.3 22.3 294 181-499 274-651 (962)
169 PF07517 SecA_DEAD: SecA DEAD- 98.9 3.2E-08 7E-13 97.1 15.7 128 164-312 76-210 (266)
170 KOG0952 DNA/RNA helicase MER3/ 98.7 1.2E-09 2.6E-14 120.1 -1.3 132 165-314 927-1061(1230)
171 PRK15483 type III restriction- 98.7 3.1E-07 6.7E-12 103.6 15.3 74 444-517 501-583 (986)
172 KOG1016 Predicted DNA helicase 98.6 3.7E-06 8E-11 90.1 19.1 105 394-498 719-844 (1387)
173 COG3587 Restriction endonuclea 98.5 1E-05 2.2E-10 88.3 20.3 46 443-488 482-527 (985)
174 TIGR00596 rad1 DNA repair prot 98.4 9.5E-06 2.1E-10 91.7 18.3 66 276-341 8-73 (814)
175 KOG0921 Dosage compensation co 98.4 1.8E-06 3.8E-11 94.1 11.1 302 173-499 386-772 (1282)
176 KOG1001 Helicase-like transcri 98.4 7.9E-07 1.7E-11 98.2 8.3 102 395-496 540-643 (674)
177 PF13307 Helicase_C_2: Helicas 98.3 1.1E-06 2.5E-11 81.1 6.1 113 387-501 2-150 (167)
178 PF02562 PhoH: PhoH-like prote 98.3 3.3E-06 7.1E-11 79.7 8.8 145 164-338 3-154 (205)
179 PF13086 AAA_11: AAA domain; P 98.2 1.1E-05 2.4E-10 78.5 12.3 74 165-241 1-75 (236)
180 PF13604 AAA_30: AAA domain; P 98.1 1.6E-05 3.4E-10 75.5 10.7 123 165-339 1-130 (196)
181 PF13872 AAA_34: P-loop contai 98.1 2.1E-05 4.5E-10 77.7 11.7 173 147-347 25-227 (303)
182 KOG1802 RNA helicase nonsense 98.1 7.8E-05 1.7E-09 79.3 14.7 76 157-242 402-477 (935)
183 PF12340 DUF3638: Protein of u 97.9 8.1E-05 1.8E-09 70.9 11.1 155 143-313 3-186 (229)
184 PRK10536 hypothetical protein; 97.9 7.1E-05 1.5E-09 72.7 9.7 144 162-335 56-208 (262)
185 PF09848 DUF2075: Uncharacteri 97.8 8.6E-05 1.9E-09 77.3 10.0 107 183-326 4-117 (352)
186 KOG1803 DNA helicase [Replicat 97.8 6.8E-05 1.5E-09 79.4 8.7 66 164-240 184-250 (649)
187 TIGR00376 DNA helicase, putati 97.7 0.0003 6.6E-09 78.5 12.8 67 164-241 156-223 (637)
188 PF13245 AAA_19: Part of AAA d 97.5 0.00048 1E-08 54.3 7.9 60 173-239 2-62 (76)
189 TIGR01448 recD_rel helicase, p 97.5 0.0011 2.5E-08 75.2 13.7 131 164-339 322-452 (720)
190 PRK13889 conjugal transfer rel 97.5 0.0019 4E-08 74.9 15.2 126 161-339 343-470 (988)
191 TIGR01447 recD exodeoxyribonuc 97.4 0.0017 3.7E-08 71.7 13.6 143 167-339 147-295 (586)
192 KOG1132 Helicase of the DEAD s 97.4 0.00084 1.8E-08 74.1 10.9 108 393-501 560-722 (945)
193 smart00492 HELICc3 helicase su 97.4 0.00089 1.9E-08 59.7 9.3 93 407-499 4-136 (141)
194 PRK10875 recD exonuclease V su 97.4 0.0013 2.8E-08 72.9 12.5 142 167-339 154-301 (615)
195 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0037 8E-08 71.3 15.6 62 164-236 351-413 (744)
196 PF14617 CMS1: U3-containing 9 97.3 0.00065 1.4E-08 66.1 7.1 87 217-310 124-212 (252)
197 smart00491 HELICc2 helicase su 97.2 0.0014 3E-08 58.6 8.4 94 407-500 4-138 (142)
198 KOG1805 DNA replication helica 97.2 0.002 4.3E-08 72.0 10.6 156 139-313 647-810 (1100)
199 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.9E-08 62.0 7.7 53 281-340 63-115 (190)
200 COG1875 NYN ribonuclease and A 97.1 0.0037 8.1E-08 62.9 10.9 142 162-337 225-385 (436)
201 KOG0383 Predicted helicase [Ge 97.1 3.6E-05 7.7E-10 84.4 -4.3 70 387-457 624-696 (696)
202 PF13401 AAA_22: AAA domain; P 97.1 0.0024 5.2E-08 56.0 8.0 21 179-199 3-23 (131)
203 PF13871 Helicase_C_4: Helicas 97.0 0.0023 5.1E-08 63.1 8.4 81 435-515 52-143 (278)
204 PF05970 PIF1: PIF1-like helic 97.0 0.0013 2.8E-08 68.8 6.6 59 166-235 2-66 (364)
205 PRK06526 transposase; Provisio 97.0 0.0021 4.6E-08 63.4 7.4 24 176-199 94-117 (254)
206 PF00580 UvrD-helicase: UvrD/R 97.0 0.0022 4.8E-08 65.3 7.9 123 166-309 1-125 (315)
207 PRK12723 flagellar biosynthesi 97.0 0.024 5.3E-07 59.2 15.5 131 180-351 174-309 (388)
208 PRK13826 Dtr system oriT relax 96.9 0.018 4E-07 67.3 15.7 137 150-339 367-505 (1102)
209 PRK08181 transposase; Validate 96.9 0.013 2.8E-07 58.3 11.9 48 297-344 165-213 (269)
210 PRK14974 cell division protein 96.8 0.019 4.2E-07 58.8 13.3 54 298-351 221-275 (336)
211 KOG0298 DEAD box-containing he 96.6 0.005 1.1E-07 70.7 8.0 157 179-347 373-557 (1394)
212 PRK14722 flhF flagellar biosyn 96.6 0.018 3.8E-07 59.8 11.0 23 179-201 136-158 (374)
213 PHA02533 17 large terminase pr 96.5 0.018 3.8E-07 63.0 11.3 150 165-340 59-210 (534)
214 PRK05642 DNA replication initi 96.5 0.0094 2E-07 58.2 8.4 45 298-342 96-141 (234)
215 cd00009 AAA The AAA+ (ATPases 96.5 0.03 6.6E-07 49.3 10.9 17 180-196 19-35 (151)
216 TIGR02760 TraI_TIGR conjugativ 96.5 0.18 4E-06 63.5 20.9 235 165-444 429-686 (1960)
217 PRK06921 hypothetical protein; 96.3 0.064 1.4E-06 53.4 13.1 19 179-197 116-134 (266)
218 PRK11889 flhF flagellar biosyn 96.3 0.077 1.7E-06 55.1 13.4 72 280-352 302-375 (436)
219 PRK08727 hypothetical protein; 96.3 0.033 7.1E-07 54.4 10.4 47 298-344 92-140 (233)
220 KOG1131 RNA polymerase II tran 96.2 0.06 1.3E-06 56.5 12.2 80 394-473 530-623 (755)
221 PRK12377 putative replication 96.2 0.028 6E-07 55.2 9.3 18 180-197 101-118 (248)
222 KOG1133 Helicase of the DEAD s 96.2 0.1 2.2E-06 56.8 13.8 107 392-501 627-780 (821)
223 PRK06835 DNA replication prote 96.1 0.07 1.5E-06 54.7 12.4 49 297-345 244-294 (329)
224 PRK06893 DNA replication initi 96.1 0.022 4.8E-07 55.4 8.4 46 298-343 90-137 (229)
225 COG1198 PriA Primosomal protei 96.1 0.072 1.6E-06 59.8 13.3 85 382-467 233-318 (730)
226 smart00382 AAA ATPases associa 96.1 0.014 3.1E-07 51.0 6.5 18 180-197 2-19 (148)
227 PRK08084 DNA replication initi 96.1 0.023 5.1E-07 55.5 8.3 43 300-342 98-142 (235)
228 PRK07952 DNA replication prote 96.0 0.11 2.4E-06 50.8 12.6 49 297-345 160-210 (244)
229 PRK08116 hypothetical protein; 96.0 0.089 1.9E-06 52.5 12.0 48 297-345 176-226 (268)
230 KOG0989 Replication factor C, 96.0 0.04 8.7E-07 54.4 9.1 60 294-354 124-186 (346)
231 COG3421 Uncharacterized protei 95.9 0.019 4.2E-07 61.1 7.3 143 185-343 2-168 (812)
232 PF00448 SRP54: SRP54-type pro 95.9 0.13 2.9E-06 48.6 12.2 51 298-348 82-133 (196)
233 PF00308 Bac_DnaA: Bacterial d 95.8 0.059 1.3E-06 52.0 9.8 48 297-344 95-144 (219)
234 cd01124 KaiC KaiC is a circadi 95.8 0.043 9.3E-07 51.3 8.5 48 183-242 2-49 (187)
235 cd01120 RecA-like_NTPases RecA 95.8 0.085 1.8E-06 47.6 10.2 45 298-342 84-138 (165)
236 PF03354 Terminase_1: Phage Te 95.7 0.038 8.3E-07 60.0 9.0 71 168-245 1-80 (477)
237 PRK12727 flagellar biosynthesi 95.7 0.96 2.1E-05 49.0 19.0 21 179-199 349-369 (559)
238 COG1484 DnaC DNA replication p 95.7 0.081 1.8E-06 52.3 10.3 49 179-239 104-152 (254)
239 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.074 1.6E-06 51.4 9.8 42 300-341 91-133 (226)
240 PRK00149 dnaA chromosomal repl 95.6 0.099 2.2E-06 56.4 11.4 48 298-345 210-259 (450)
241 PRK14087 dnaA chromosomal repl 95.5 0.089 1.9E-06 56.5 10.7 48 297-344 204-253 (450)
242 PRK14712 conjugal transfer nic 95.5 0.13 2.7E-06 62.6 12.6 64 165-235 835-900 (1623)
243 COG1419 FlhF Flagellar GTP-bin 95.4 0.48 1E-05 49.2 14.9 132 179-352 202-336 (407)
244 PRK05703 flhF flagellar biosyn 95.4 0.57 1.2E-05 49.9 16.1 67 281-351 285-354 (424)
245 PRK06731 flhF flagellar biosyn 95.3 0.31 6.8E-06 48.4 13.0 130 179-352 74-209 (270)
246 PHA03333 putative ATPase subun 95.3 0.47 1E-05 52.5 15.1 153 166-340 170-332 (752)
247 TIGR01547 phage_term_2 phage t 95.3 0.06 1.3E-06 57.1 8.3 136 182-343 3-143 (396)
248 TIGR00362 DnaA chromosomal rep 95.3 0.13 2.9E-06 54.6 10.9 46 299-344 199-246 (405)
249 PRK11054 helD DNA helicase IV; 95.2 0.077 1.7E-06 59.9 9.4 78 158-244 189-266 (684)
250 PRK14723 flhF flagellar biosyn 95.2 0.29 6.4E-06 55.3 13.6 38 425-462 459-500 (767)
251 PRK12422 chromosomal replicati 95.1 0.12 2.7E-06 55.3 10.2 50 298-347 201-252 (445)
252 PRK14086 dnaA chromosomal repl 95.1 0.088 1.9E-06 57.9 8.8 49 297-345 375-425 (617)
253 PRK09183 transposase/IS protei 95.0 0.13 2.8E-06 51.1 9.3 23 177-199 99-121 (259)
254 PRK08903 DnaA regulatory inact 95.0 0.15 3.2E-06 49.5 9.7 43 299-342 90-133 (227)
255 COG2805 PilT Tfp pilus assembl 95.0 0.028 6.1E-07 55.4 4.3 53 136-207 99-151 (353)
256 PRK05580 primosome assembly pr 95.0 0.12 2.6E-06 58.6 10.1 76 393-469 189-265 (679)
257 cd01122 GP4d_helicase GP4d_hel 94.9 0.14 3.1E-06 51.1 9.5 55 177-242 27-81 (271)
258 PRK10919 ATP-dependent DNA hel 94.9 0.064 1.4E-06 60.8 7.8 71 165-244 2-72 (672)
259 TIGR00064 ftsY signal recognit 94.9 0.43 9.4E-06 47.6 12.8 54 298-351 153-213 (272)
260 PRK14088 dnaA chromosomal repl 94.9 0.28 6.1E-06 52.6 12.1 50 299-348 194-245 (440)
261 PF05127 Helicase_RecD: Helica 94.9 0.019 4.2E-07 52.9 2.7 124 184-341 1-124 (177)
262 PRK13709 conjugal transfer nic 94.8 0.27 5.9E-06 60.6 12.9 65 164-235 966-1032(1747)
263 TIGR00595 priA primosomal prot 94.8 0.13 2.9E-06 56.1 9.3 76 392-468 23-99 (505)
264 TIGR02785 addA_Gpos recombinat 94.7 0.16 3.5E-06 61.6 10.7 124 165-310 1-126 (1232)
265 PHA03368 DNA packaging termina 94.7 0.19 4.1E-06 55.3 9.9 138 178-342 252-392 (738)
266 COG0593 DnaA ATPase involved i 94.6 0.18 3.8E-06 52.8 9.4 48 299-346 175-224 (408)
267 PRK13833 conjugal transfer pro 94.6 0.11 2.4E-06 53.0 7.7 65 156-231 121-186 (323)
268 cd00561 CobA_CobO_BtuR ATP:cor 94.6 0.3 6.4E-06 44.4 9.6 53 296-348 92-146 (159)
269 COG2256 MGS1 ATPase related to 94.5 0.13 2.9E-06 52.8 7.9 19 181-199 49-67 (436)
270 COG1444 Predicted P-loop ATPas 94.5 0.36 7.9E-06 54.1 11.9 151 155-340 204-356 (758)
271 PRK13894 conjugal transfer ATP 94.5 0.091 2E-06 53.7 6.8 66 155-231 124-190 (319)
272 PRK10917 ATP-dependent DNA hel 94.5 0.1 2.2E-06 59.3 7.9 75 393-467 309-388 (681)
273 PRK11773 uvrD DNA-dependent he 94.4 0.096 2.1E-06 60.0 7.6 72 164-244 8-79 (721)
274 PRK12724 flagellar biosynthesi 94.4 0.64 1.4E-05 48.9 12.8 54 298-351 298-356 (432)
275 PRK08939 primosomal protein Dn 94.4 0.29 6.2E-06 49.8 10.2 50 297-346 215-267 (306)
276 PRK14873 primosome assembly pr 94.4 0.26 5.5E-06 55.5 10.6 85 383-468 177-263 (665)
277 PF13173 AAA_14: AAA domain 94.4 0.34 7.3E-06 42.3 9.4 37 299-338 61-97 (128)
278 PRK00411 cdc6 cell division co 94.4 0.16 3.5E-06 53.7 8.7 18 180-197 55-72 (394)
279 PRK11331 5-methylcytosine-spec 94.3 0.12 2.7E-06 54.6 7.5 35 164-198 178-212 (459)
280 TIGR01075 uvrD DNA helicase II 94.3 0.099 2.1E-06 59.9 7.4 72 164-244 3-74 (715)
281 PF05621 TniB: Bacterial TniB 94.3 0.33 7.1E-06 48.5 10.1 57 181-242 62-119 (302)
282 TIGR03499 FlhF flagellar biosy 94.2 0.33 7.1E-06 48.8 10.0 19 180-198 194-212 (282)
283 PF05876 Terminase_GpA: Phage 94.0 0.084 1.8E-06 58.3 5.7 127 165-313 16-148 (557)
284 PRK06995 flhF flagellar biosyn 94.0 0.33 7.1E-06 52.2 9.9 22 180-201 256-277 (484)
285 PRK05707 DNA polymerase III su 93.9 0.17 3.6E-06 52.0 7.5 35 165-199 3-41 (328)
286 TIGR02782 TrbB_P P-type conjug 93.9 0.19 4E-06 51.0 7.6 66 155-231 108-174 (299)
287 PF06745 KaiC: KaiC; InterPro 93.9 0.35 7.6E-06 46.8 9.3 139 179-340 18-160 (226)
288 TIGR02760 TraI_TIGR conjugativ 93.9 0.34 7.5E-06 61.1 11.3 63 164-235 1018-1084(1960)
289 PRK12402 replication factor C 93.8 0.44 9.5E-06 49.1 10.5 40 298-339 124-163 (337)
290 PRK05986 cob(I)alamin adenolsy 93.8 0.51 1.1E-05 44.1 9.6 143 178-349 20-167 (191)
291 TIGR01074 rep ATP-dependent DN 93.8 0.18 3.9E-06 57.3 8.1 70 166-244 2-71 (664)
292 PF05496 RuvB_N: Holliday junc 93.7 0.24 5.2E-06 47.4 7.5 19 181-199 51-69 (233)
293 PRK08533 flagellar accessory p 93.7 0.67 1.5E-05 45.0 10.9 53 178-242 22-74 (230)
294 cd00984 DnaB_C DnaB helicase C 93.6 0.75 1.6E-05 44.9 11.3 38 179-226 12-49 (242)
295 PRK07764 DNA polymerase III su 93.5 0.24 5.2E-06 57.0 8.5 45 298-344 119-163 (824)
296 TIGR00708 cobA cob(I)alamin ad 93.5 0.6 1.3E-05 43.0 9.5 53 297-349 95-149 (173)
297 PRK12726 flagellar biosynthesi 93.5 0.94 2E-05 47.0 11.9 23 179-201 205-227 (407)
298 PF00004 AAA: ATPase family as 93.5 0.68 1.5E-05 40.1 9.8 17 299-315 58-74 (132)
299 TIGR01425 SRP54_euk signal rec 93.5 1.2 2.5E-05 47.3 13.0 53 299-351 182-235 (429)
300 PLN03025 replication factor C 93.5 0.62 1.3E-05 47.8 10.8 41 299-341 99-139 (319)
301 PRK08769 DNA polymerase III su 93.4 0.52 1.1E-05 48.1 9.9 35 164-198 3-44 (319)
302 TIGR02881 spore_V_K stage V sp 93.4 0.69 1.5E-05 45.9 10.7 20 180-199 42-61 (261)
303 TIGR03877 thermo_KaiC_1 KaiC d 93.4 0.45 9.8E-06 46.5 9.2 53 179-243 20-72 (237)
304 PTZ00293 thymidine kinase; Pro 93.3 0.63 1.4E-05 44.3 9.6 38 180-228 4-41 (211)
305 TIGR00643 recG ATP-dependent D 93.3 0.21 4.6E-06 56.3 7.5 75 393-467 283-362 (630)
306 PHA00729 NTP-binding motif con 93.3 0.77 1.7E-05 44.2 10.2 75 276-350 59-138 (226)
307 TIGR03881 KaiC_arch_4 KaiC dom 93.2 1 2.2E-05 43.7 11.3 52 179-242 19-70 (229)
308 TIGR02525 plasmid_TraJ plasmid 93.2 0.22 4.7E-06 52.0 6.9 49 139-206 126-174 (372)
309 TIGR03015 pepcterm_ATPase puta 93.2 1.3 2.7E-05 44.0 12.3 34 165-198 23-61 (269)
310 PRK00771 signal recognition pa 93.1 1.6 3.4E-05 46.6 13.4 52 300-351 176-228 (437)
311 PRK14721 flhF flagellar biosyn 93.1 1.4 3E-05 46.7 12.8 20 179-198 190-209 (420)
312 PRK13342 recombination factor 93.1 0.63 1.4E-05 49.6 10.4 38 299-341 92-129 (413)
313 PHA02544 44 clamp loader, smal 93.1 0.49 1.1E-05 48.4 9.3 39 299-337 100-138 (316)
314 PTZ00112 origin recognition co 92.9 1.4 3.1E-05 50.2 12.9 27 298-325 868-894 (1164)
315 COG1435 Tdk Thymidine kinase [ 92.9 1.1 2.3E-05 41.8 10.1 90 182-312 6-95 (201)
316 TIGR03600 phage_DnaB phage rep 92.8 1.2 2.7E-05 47.5 12.3 50 179-239 193-242 (421)
317 TIGR00959 ffh signal recogniti 92.8 1.9 4.1E-05 45.9 13.4 20 182-201 101-120 (428)
318 PRK10867 signal recognition pa 92.8 1.7 3.7E-05 46.3 13.0 20 182-201 102-121 (433)
319 COG1219 ClpX ATP-dependent pro 92.8 0.12 2.6E-06 51.4 4.0 22 178-199 95-116 (408)
320 PF03237 Terminase_6: Terminas 92.7 1.8 3.9E-05 44.9 13.2 149 184-355 1-154 (384)
321 PRK04195 replication factor C 92.6 0.68 1.5E-05 50.4 10.1 18 180-197 39-56 (482)
322 PRK06645 DNA polymerase III su 92.6 0.63 1.4E-05 50.6 9.6 20 181-200 44-63 (507)
323 TIGR00580 mfd transcription-re 92.6 0.6 1.3E-05 54.6 10.1 75 393-467 499-578 (926)
324 CHL00181 cbbX CbbX; Provisiona 92.5 1.3 2.9E-05 44.5 11.4 21 180-200 59-79 (287)
325 COG3972 Superfamily I DNA and 92.4 0.63 1.4E-05 49.0 8.8 150 153-313 151-309 (660)
326 TIGR01073 pcrA ATP-dependent D 92.4 0.32 7E-06 55.9 7.6 72 164-244 3-74 (726)
327 PF01695 IstB_IS21: IstB-like 92.4 0.23 5E-06 46.2 5.3 46 177-234 44-89 (178)
328 PRK14956 DNA polymerase III su 92.4 0.28 6E-06 52.5 6.5 19 182-200 42-60 (484)
329 cd03115 SRP The signal recogni 92.4 2.4 5.2E-05 39.0 12.2 54 298-351 81-135 (173)
330 COG1110 Reverse gyrase [DNA re 92.4 0.27 5.9E-06 56.0 6.6 66 389-454 120-191 (1187)
331 PRK14964 DNA polymerase III su 92.2 0.43 9.2E-06 51.6 7.7 46 297-344 114-159 (491)
332 PRK14949 DNA polymerase III su 92.2 0.28 6.1E-06 56.1 6.5 45 298-344 118-162 (944)
333 COG4962 CpaF Flp pilus assembl 92.1 0.27 5.8E-06 49.8 5.6 60 162-233 154-214 (355)
334 TIGR02524 dot_icm_DotB Dot/Icm 92.1 0.21 4.6E-06 51.9 5.1 26 179-205 133-158 (358)
335 KOG1513 Nuclear helicase MOP-3 92.0 0.26 5.7E-06 54.4 5.7 78 437-514 850-938 (1300)
336 PRK06904 replicative DNA helic 92.0 3.1 6.6E-05 45.1 14.0 117 179-314 220-349 (472)
337 KOG0701 dsRNA-specific nucleas 92.0 0.094 2E-06 63.1 2.6 94 396-489 294-399 (1606)
338 PRK13851 type IV secretion sys 92.0 0.24 5.3E-06 51.0 5.3 43 177-231 159-201 (344)
339 COG1474 CDC6 Cdc6-related prot 91.9 1.8 4E-05 45.1 11.7 18 181-198 43-60 (366)
340 PRK10416 signal recognition pa 91.9 4.3 9.4E-05 41.5 14.2 54 298-351 195-255 (318)
341 PRK14952 DNA polymerase III su 91.8 0.47 1E-05 52.5 7.6 43 298-342 117-159 (584)
342 PRK13900 type IV secretion sys 91.8 0.52 1.1E-05 48.5 7.6 43 177-231 157-199 (332)
343 KOG0991 Replication factor C, 91.8 0.56 1.2E-05 44.7 6.9 46 289-335 101-148 (333)
344 PRK07003 DNA polymerase III su 91.8 0.63 1.4E-05 52.4 8.5 44 298-343 118-161 (830)
345 PRK11823 DNA repair protein Ra 91.6 1.4 3E-05 47.4 10.8 58 173-242 68-130 (446)
346 PRK13764 ATPase; Provisional 91.6 0.37 8E-06 53.2 6.5 26 179-205 256-281 (602)
347 PRK06067 flagellar accessory p 91.6 2 4.3E-05 41.8 11.2 52 179-242 24-75 (234)
348 PF03796 DnaB_C: DnaB-like hel 91.6 2 4.3E-05 42.5 11.3 128 180-327 19-162 (259)
349 PF02534 T4SS-DNA_transf: Type 91.4 0.21 4.6E-06 54.2 4.5 49 181-242 45-93 (469)
350 PRK10689 transcription-repair 91.4 0.5 1.1E-05 56.6 7.8 75 393-467 648-727 (1147)
351 PRK08506 replicative DNA helic 91.4 1.9 4.1E-05 46.8 11.6 115 179-313 191-316 (472)
352 COG1200 RecG RecG-like helicas 91.3 0.74 1.6E-05 50.7 8.3 88 382-469 297-391 (677)
353 cd01126 TraG_VirD4 The TraG/Tr 91.3 0.16 3.4E-06 53.7 3.2 48 182-242 1-48 (384)
354 KOG0742 AAA+-type ATPase [Post 91.3 0.38 8.3E-06 49.5 5.7 56 284-343 432-496 (630)
355 KOG1133 Helicase of the DEAD s 91.3 0.27 5.9E-06 53.6 4.9 43 164-206 14-60 (821)
356 PRK11034 clpA ATP-dependent Cl 91.2 2.3 5E-05 48.7 12.5 44 301-344 280-327 (758)
357 PF02572 CobA_CobO_BtuR: ATP:c 91.1 4.6 0.0001 37.1 12.2 55 294-348 91-147 (172)
358 COG2909 MalT ATP-dependent tra 91.1 0.61 1.3E-05 52.5 7.5 44 298-341 128-171 (894)
359 COG3973 Superfamily I DNA and 91.0 1.2 2.6E-05 48.3 9.2 92 147-243 186-284 (747)
360 PRK13341 recombination factor 91.0 1.6 3.4E-05 49.8 10.8 42 299-345 109-150 (725)
361 PRK14963 DNA polymerase III su 90.9 0.81 1.8E-05 49.9 8.3 29 297-329 114-142 (504)
362 KOG0060 Long-chain acyl-CoA tr 90.9 0.66 1.4E-05 50.0 7.2 61 281-346 571-631 (659)
363 PRK14960 DNA polymerase III su 90.9 0.53 1.1E-05 52.2 6.7 43 298-342 117-159 (702)
364 PRK04537 ATP-dependent RNA hel 90.8 1.5 3.3E-05 48.7 10.6 74 218-307 256-333 (572)
365 KOG0344 ATP-dependent RNA heli 90.8 3 6.6E-05 44.9 12.0 98 189-310 366-467 (593)
366 PRK14958 DNA polymerase III su 90.8 1.4 3E-05 48.2 10.0 39 298-337 118-156 (509)
367 cd01130 VirB11-like_ATPase Typ 90.8 0.37 8E-06 45.2 4.9 33 165-197 9-42 (186)
368 PF13177 DNA_pol3_delta2: DNA 90.7 2.1 4.5E-05 39.1 9.6 41 298-339 101-141 (162)
369 TIGR03878 thermo_KaiC_2 KaiC d 90.7 2.1 4.7E-05 42.4 10.5 37 179-226 35-71 (259)
370 cd01121 Sms Sms (bacterial rad 90.7 3.2 7E-05 43.4 12.1 52 179-242 81-132 (372)
371 PRK05748 replicative DNA helic 90.6 2.6 5.7E-05 45.4 11.8 114 179-312 202-327 (448)
372 PRK14962 DNA polymerase III su 90.5 0.88 1.9E-05 49.2 8.0 18 182-199 38-55 (472)
373 PRK07994 DNA polymerase III su 90.5 2 4.3E-05 48.1 10.9 19 183-201 41-59 (647)
374 PRK07471 DNA polymerase III su 90.5 2.2 4.7E-05 44.6 10.7 138 182-339 43-180 (365)
375 KOG0339 ATP-dependent RNA heli 90.5 2.2 4.8E-05 45.2 10.3 71 393-467 295-375 (731)
376 KOG0739 AAA+-type ATPase [Post 90.4 2.7 5.9E-05 41.7 10.4 150 143-358 130-296 (439)
377 TIGR01420 pilT_fam pilus retra 90.2 0.72 1.6E-05 47.8 6.9 43 179-231 121-163 (343)
378 PHA03372 DNA packaging termina 90.2 3.7 8E-05 45.0 12.1 133 178-341 200-338 (668)
379 PRK13897 type IV secretion sys 90.1 0.34 7.3E-06 53.8 4.5 49 181-242 159-207 (606)
380 cd03239 ABC_SMC_head The struc 90.0 1.3 2.9E-05 41.1 7.9 42 297-338 114-156 (178)
381 TIGR02928 orc1/cdc6 family rep 90.0 1 2.3E-05 46.9 8.0 17 181-197 41-57 (365)
382 PRK04328 hypothetical protein; 90.0 2.5 5.3E-05 41.7 10.2 53 179-243 22-74 (249)
383 PRK09112 DNA polymerase III su 90.0 0.83 1.8E-05 47.4 7.0 40 297-337 139-178 (351)
384 PRK05973 replicative DNA helic 89.8 0.72 1.6E-05 44.9 6.1 81 149-242 24-114 (237)
385 PF01637 Arch_ATPase: Archaeal 89.8 0.38 8.2E-06 46.3 4.3 55 282-340 105-165 (234)
386 PRK14955 DNA polymerase III su 89.8 0.62 1.3E-05 49.4 6.1 19 182-200 40-58 (397)
387 PRK08691 DNA polymerase III su 89.8 1.4 2.9E-05 49.5 8.8 39 298-337 118-156 (709)
388 COG0470 HolB ATPase involved i 89.8 1.3 2.9E-05 45.1 8.5 45 297-343 107-151 (325)
389 PRK14961 DNA polymerase III su 89.7 0.57 1.2E-05 49.0 5.7 18 182-199 40-57 (363)
390 PRK08840 replicative DNA helic 89.7 5.8 0.00013 42.9 13.5 52 179-241 216-267 (464)
391 KOG0298 DEAD box-containing he 89.7 0.55 1.2E-05 54.7 5.8 99 392-494 1219-1317(1394)
392 PRK07004 replicative DNA helic 89.5 2.9 6.2E-05 45.2 11.0 115 179-313 212-338 (460)
393 PRK06871 DNA polymerase III su 89.3 1.4 3E-05 45.2 7.9 34 166-199 3-43 (325)
394 COG4626 Phage terminase-like p 89.3 2.2 4.8E-05 46.0 9.6 74 164-245 60-144 (546)
395 PRK08760 replicative DNA helic 89.3 3.2 6.9E-05 45.0 11.1 113 180-312 229-352 (476)
396 PF06733 DEAD_2: DEAD_2; Inte 89.2 0.23 5E-06 46.0 2.1 43 272-314 116-160 (174)
397 KOG2028 ATPase related to the 89.1 1.2 2.5E-05 45.4 6.9 19 181-199 163-181 (554)
398 PRK00440 rfc replication facto 89.0 3.4 7.4E-05 42.0 10.8 38 299-337 102-139 (319)
399 PRK05896 DNA polymerase III su 89.0 1.2 2.6E-05 49.2 7.6 20 181-200 39-58 (605)
400 TIGR00665 DnaB replicative DNA 88.9 4 8.7E-05 43.8 11.6 114 179-313 194-319 (434)
401 cd01129 PulE-GspE PulE/GspE Th 88.9 0.85 1.8E-05 45.3 6.0 37 167-204 65-103 (264)
402 PF12846 AAA_10: AAA-like doma 88.9 0.68 1.5E-05 46.6 5.5 42 181-233 2-43 (304)
403 PRK07414 cob(I)yrinic acid a,c 88.8 5.1 0.00011 37.0 10.5 52 297-348 113-166 (178)
404 PRK08006 replicative DNA helic 88.8 8.1 0.00018 41.8 13.7 116 179-312 223-349 (471)
405 PRK09111 DNA polymerase III su 88.7 1.1 2.3E-05 50.0 7.1 40 297-337 130-169 (598)
406 PRK12323 DNA polymerase III su 88.5 0.9 2E-05 50.4 6.2 39 298-337 123-161 (700)
407 PRK14965 DNA polymerase III su 88.5 1.2 2.7E-05 49.5 7.5 46 297-344 117-162 (576)
408 COG0630 VirB11 Type IV secreto 88.3 0.92 2E-05 46.2 5.9 55 165-231 127-182 (312)
409 PRK04837 ATP-dependent RNA hel 88.3 2.5 5.5E-05 45.1 9.6 72 219-306 255-330 (423)
410 TIGR02639 ClpA ATP-dependent C 88.3 7.8 0.00017 44.6 14.1 20 180-199 203-222 (731)
411 PRK14959 DNA polymerase III su 88.3 1.1 2.5E-05 49.6 6.9 44 298-345 118-163 (624)
412 KOG0331 ATP-dependent RNA heli 88.3 2.1 4.6E-05 46.1 8.7 73 217-305 339-415 (519)
413 PRK14701 reverse gyrase; Provi 88.2 1.5 3.3E-05 54.3 8.6 61 393-453 121-187 (1638)
414 PRK13850 type IV secretion sys 88.2 0.6 1.3E-05 52.5 4.8 49 181-242 140-188 (670)
415 TIGR02012 tigrfam_recA protein 88.2 1.3 2.8E-05 45.2 6.7 44 179-233 54-97 (321)
416 PF10593 Z1: Z1 domain; Inter 88.1 1.4 3E-05 43.0 6.7 79 418-501 110-193 (239)
417 COG3267 ExeA Type II secretory 88.1 2.9 6.4E-05 40.6 8.7 23 176-198 46-69 (269)
418 KOG0733 Nuclear AAA ATPase (VC 88.1 6.5 0.00014 43.0 12.0 54 141-197 506-562 (802)
419 PTZ00110 helicase; Provisional 87.9 3.1 6.6E-05 46.1 10.1 72 218-305 376-451 (545)
420 PRK06964 DNA polymerase III su 87.9 2.2 4.8E-05 44.0 8.4 34 166-199 2-40 (342)
421 PRK05563 DNA polymerase III su 87.9 1.1 2.3E-05 49.8 6.5 20 181-200 39-58 (559)
422 PRK07940 DNA polymerase III su 87.9 1.4 3E-05 46.5 7.1 45 298-344 116-160 (394)
423 COG2804 PulE Type II secretory 87.7 0.81 1.8E-05 48.8 5.1 41 166-207 242-284 (500)
424 PRK09376 rho transcription ter 87.7 4 8.8E-05 42.6 10.0 90 105-196 69-185 (416)
425 PRK14957 DNA polymerase III su 87.7 2.8 6.1E-05 46.1 9.5 39 298-337 118-156 (546)
426 PRK04841 transcriptional regul 87.7 5.1 0.00011 47.3 12.6 44 299-342 121-164 (903)
427 TIGR00678 holB DNA polymerase 87.6 1.5 3.3E-05 41.0 6.6 17 297-313 94-110 (188)
428 PRK11192 ATP-dependent RNA hel 87.6 2.7 5.9E-05 45.0 9.4 72 218-305 244-319 (434)
429 PRK14951 DNA polymerase III su 87.3 2.1 4.5E-05 47.7 8.3 44 298-343 123-166 (618)
430 PF05729 NACHT: NACHT domain 87.3 4 8.7E-05 36.6 9.1 16 182-197 2-17 (166)
431 PRK06090 DNA polymerase III su 87.3 3.7 8.1E-05 41.9 9.5 34 165-198 3-43 (319)
432 PRK10590 ATP-dependent RNA hel 87.1 3.5 7.6E-05 44.6 9.9 71 218-304 244-318 (456)
433 TIGR00763 lon ATP-dependent pr 87.1 6.9 0.00015 45.4 12.7 19 179-197 346-364 (775)
434 COG2255 RuvB Holliday junction 87.1 2 4.3E-05 42.4 6.9 19 181-199 53-71 (332)
435 PRK08451 DNA polymerase III su 87.0 0.71 1.5E-05 50.4 4.4 40 297-337 115-154 (535)
436 TIGR00635 ruvB Holliday juncti 87.0 2.5 5.4E-05 42.9 8.2 17 181-197 31-47 (305)
437 PF05707 Zot: Zonular occluden 86.9 0.84 1.8E-05 43.0 4.3 54 299-352 79-137 (193)
438 cd01127 TrwB Bacterial conjuga 86.8 0.59 1.3E-05 49.7 3.6 49 175-234 37-85 (410)
439 PRK09354 recA recombinase A; P 86.8 2.3 4.9E-05 43.9 7.6 44 179-233 59-102 (349)
440 PF04665 Pox_A32: Poxvirus A32 86.7 0.87 1.9E-05 44.3 4.4 23 181-204 14-36 (241)
441 KOG0741 AAA+-type ATPase [Post 86.7 8.8 0.00019 41.3 11.8 68 148-228 494-573 (744)
442 PF00437 T2SE: Type II/IV secr 86.7 0.69 1.5E-05 46.1 3.8 43 178-231 125-167 (270)
443 PRK08699 DNA polymerase III su 86.7 4.8 0.0001 41.3 10.0 35 166-200 2-41 (325)
444 TIGR03880 KaiC_arch_3 KaiC dom 86.7 3.4 7.5E-05 39.8 8.7 52 179-242 15-66 (224)
445 TIGR03346 chaperone_ClpB ATP-d 86.7 6.2 0.00014 46.2 12.2 19 180-198 194-212 (852)
446 cd00268 DEADc DEAD-box helicas 86.6 3.2 7E-05 39.1 8.3 71 393-467 68-148 (203)
447 PRK14954 DNA polymerase III su 86.6 3.5 7.7E-05 46.1 9.6 19 182-200 40-58 (620)
448 TIGR00631 uvrb excinuclease AB 86.5 8.9 0.00019 43.3 12.9 78 218-311 441-522 (655)
449 PF03969 AFG1_ATPase: AFG1-lik 86.5 14 0.0003 38.6 13.3 46 298-344 126-172 (362)
450 PRK11776 ATP-dependent RNA hel 86.3 3.4 7.3E-05 44.7 9.3 73 219-307 242-318 (460)
451 cd00983 recA RecA is a bacter 86.3 1.8 3.8E-05 44.3 6.5 44 179-233 54-97 (325)
452 COG1197 Mfd Transcription-repa 86.2 2.4 5.2E-05 49.7 8.2 75 393-467 642-721 (1139)
453 PRK10436 hypothetical protein; 86.2 1.5 3.2E-05 47.2 6.2 38 167-205 203-242 (462)
454 PRK07993 DNA polymerase III su 86.0 4.6 9.9E-05 41.6 9.5 35 165-199 2-43 (334)
455 COG2109 BtuR ATP:corrinoid ade 85.9 9.6 0.00021 35.4 10.3 53 298-350 121-175 (198)
456 PRK14969 DNA polymerase III su 85.8 1.5 3.2E-05 48.3 6.1 40 297-337 117-156 (527)
457 TIGR01054 rgy reverse gyrase. 85.8 1.9 4.1E-05 52.0 7.5 62 392-453 119-187 (1171)
458 TIGR03345 VI_ClpV1 type VI sec 85.8 2.4 5.1E-05 49.5 8.0 28 170-197 192-225 (852)
459 PRK10865 protein disaggregatio 85.7 4.7 0.0001 47.2 10.5 18 181-198 200-217 (857)
460 PRK05636 replicative DNA helic 85.7 6.7 0.00015 42.8 11.0 16 298-313 374-389 (505)
461 cd01131 PilT Pilus retraction 85.7 1.2 2.7E-05 42.1 4.8 21 183-204 4-24 (198)
462 COG1702 PhoH Phosphate starvat 85.6 1.5 3.2E-05 44.4 5.5 45 163-207 126-170 (348)
463 PRK05595 replicative DNA helic 85.6 3.3 7.1E-05 44.6 8.6 51 180-241 201-251 (444)
464 TIGR03819 heli_sec_ATPase heli 85.6 2 4.3E-05 44.4 6.6 63 155-231 154-217 (340)
465 TIGR00767 rho transcription te 85.4 1.1 2.4E-05 46.8 4.7 32 105-136 69-100 (415)
466 COG0513 SrmB Superfamily II DN 85.3 4.9 0.00011 44.1 9.9 69 220-304 274-346 (513)
467 PRK13822 conjugal transfer cou 85.2 1 2.2E-05 50.5 4.6 50 180-242 224-273 (641)
468 TIGR00416 sms DNA repair prote 85.0 7.5 0.00016 41.9 10.9 58 173-242 82-144 (454)
469 PF10412 TrwB_AAD_bind: Type I 85.0 1.1 2.4E-05 47.2 4.6 47 177-234 12-58 (386)
470 PRK14950 DNA polymerase III su 85.0 1.6 3.4E-05 48.8 6.0 19 182-200 40-58 (585)
471 TIGR02640 gas_vesic_GvpN gas v 84.9 1.4 3E-05 43.8 4.9 27 172-198 13-39 (262)
472 PRK13880 conjugal transfer cou 84.7 0.87 1.9E-05 51.1 3.8 46 181-239 176-221 (636)
473 CHL00095 clpC Clp protease ATP 84.6 7.7 0.00017 45.3 11.6 21 180-200 200-220 (821)
474 TIGR02533 type_II_gspE general 84.6 1.5 3.2E-05 47.7 5.4 30 167-196 227-258 (486)
475 TIGR02655 circ_KaiC circadian 84.5 6.5 0.00014 42.8 10.4 60 171-242 249-313 (484)
476 PRK07133 DNA polymerase III su 84.5 2 4.4E-05 48.5 6.4 19 182-200 42-60 (725)
477 PRK06620 hypothetical protein; 84.1 5.9 0.00013 38.0 8.7 107 221-343 16-126 (214)
478 COG0467 RAD55 RecA-superfamily 83.7 2.1 4.5E-05 42.4 5.7 53 179-243 22-74 (260)
479 PRK09165 replicative DNA helic 83.6 10 0.00023 41.3 11.4 123 180-313 217-355 (497)
480 PF13555 AAA_29: P-loop contai 83.6 1.5 3.2E-05 32.8 3.4 25 179-205 22-46 (62)
481 KOG0745 Putative ATP-dependent 83.6 1.4 3E-05 45.9 4.3 21 179-199 225-245 (564)
482 PRK14948 DNA polymerase III su 83.3 2 4.3E-05 48.2 5.8 20 181-200 39-58 (620)
483 PF00098 zf-CCHC: Zinc knuckle 83.3 0.99 2.2E-05 24.7 1.7 17 546-562 2-18 (18)
484 TIGR00614 recQ_fam ATP-depende 83.3 3.1 6.7E-05 45.2 7.2 60 394-453 51-110 (470)
485 TIGR02767 TraG-Ti Ti-type conj 83.2 1.5 3.3E-05 48.9 4.8 49 181-242 212-260 (623)
486 PRK11057 ATP-dependent DNA hel 83.2 3.8 8.2E-05 46.1 8.0 73 218-306 235-311 (607)
487 COG5008 PilU Tfp pilus assembl 83.1 1.1 2.3E-05 43.7 3.1 44 141-203 106-149 (375)
488 TIGR02538 type_IV_pilB type IV 83.0 1.7 3.6E-05 48.3 5.1 44 158-205 295-340 (564)
489 COG1132 MdlB ABC-type multidru 83.0 2.6 5.7E-05 47.0 6.7 39 297-336 481-519 (567)
490 KOG0347 RNA helicase [RNA proc 83.0 2 4.4E-05 46.0 5.3 68 397-468 266-346 (731)
491 PRK01297 ATP-dependent RNA hel 82.8 6.8 0.00015 42.6 9.7 73 218-306 334-410 (475)
492 PRK09435 membrane ATPase/prote 82.7 32 0.00069 35.4 13.8 73 279-351 175-255 (332)
493 CHL00176 ftsH cell division pr 82.7 4.1 9E-05 45.8 8.0 18 180-197 216-233 (638)
494 PRK13876 conjugal transfer cou 82.6 0.97 2.1E-05 50.8 3.0 49 180-241 144-192 (663)
495 KOG0333 U5 snRNP-like RNA heli 82.5 9.8 0.00021 40.7 10.0 71 218-304 516-590 (673)
496 TIGR03743 SXT_TraD conjugative 82.5 4.5 9.7E-05 45.5 8.2 54 179-243 175-230 (634)
497 PRK11634 ATP-dependent RNA hel 82.5 7.1 0.00015 44.0 9.8 71 219-305 245-319 (629)
498 KOG1513 Nuclear helicase MOP-3 82.5 0.72 1.6E-05 51.1 1.9 154 164-340 263-454 (1300)
499 cd03114 ArgK-like The function 82.4 7.4 0.00016 34.8 8.2 18 183-200 2-19 (148)
500 PRK06321 replicative DNA helic 82.4 20 0.00043 38.9 12.8 112 180-313 226-350 (472)
No 1
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.1e-138 Score=998.55 Aligned_cols=581 Identities=72% Similarity=1.164 Sum_probs=558.6
Q ss_pred CCcCCCcccccchhHHHHHHHHHHHhhccCCCcc----------hhHHhhhhhhccccCHHHHHHhhhhcCC-CCChhhh
Q 007831 2 MEEEDDYVEYVPIAKRRAMEAQKILQRKGQASTL----------EDELEKSKLAEVKPSLLVKASQLKRDQP-EISPTEQ 70 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~ 70 (588)
+++|+||++||||.+||++..+++++....+... +..+.+.++.+++.||+++|.++++.++ ..++.++
T Consensus 18 de~d~dyv~yv~v~err~~~~~k~l~r~~k~~~~~~q~~~~~~~~~~~~d~~g~~~n~sLL~qh~elk~~~~ak~sa~Ek 97 (610)
T KOG0341|consen 18 DEDDEDYVPYVPVQERRAQVHRKLLQRQVKAPTEEEQEDSESEREKKEDDKQGEEANKSLLDQHTELKETAEAKISASEK 97 (610)
T ss_pred ccccccceecccHHHHHHHHHHHHHHhhccccchhhccchhcccccCcccccchhhhhhHHHHHHHHHhhhhhhcchHHH
Confidence 4668899999999999999999998665443211 1222345677888999999999999766 6899999
Q ss_pred hHHHHHHHHHhhhcccccccHHhhhcCCcccCCCcCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCC
Q 007831 71 IVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRF 150 (588)
Q Consensus 71 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l 150 (588)
++.+|+++++.+++.+.|+++.|+++++.|++|+.+.|+||..+++||+++.+..|++|+|.|+|+++||||.+|.+|.+
T Consensus 98 ql~eEee~me~v~~~k~LmsV~ElakGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKF 177 (610)
T KOG0341|consen 98 QLMEEEEIMESVADGKALMSVAELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKF 177 (610)
T ss_pred HHHHHHHHHHHHhcCccceeHHHHhCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007831 151 PEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
|..+++.|+++|+.+|||+|.|.+|.+++|||+|++|.||||||++|.||+++.++++++..|+..++||.+|||||+|+
T Consensus 178 P~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRE 257 (610)
T KOG0341|consen 178 PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRE 257 (610)
T ss_pred CHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccc
Q 007831 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~ 310 (588)
||.|+++.+..++..+...++|.+++.+++||.+..++...+++|+||+|+||+||.|+|.++.++|+-|+|+++||||+
T Consensus 258 LArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADR 337 (610)
T KOG0341|consen 258 LARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADR 337 (610)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh
Q 007831 311 LVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 390 (588)
Q Consensus 311 l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l 390 (588)
|+|+||+++++.||.+|+.++|+++||||||.+++.|+++.+.+|+.++++++++++.+++|+++|+.+++|+.++++||
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCL 417 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECL 417 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC
Q 007831 391 QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470 (588)
Q Consensus 391 ~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~ 470 (588)
+++.+|+||||..+.+++.+++||..+|+.++++|||.+|++|..+++.|+.|+.+||||||+++.|+|||++.||||||
T Consensus 418 QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 418 QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhhccCchhhHHHHhhccCCCCCccC
Q 007831 471 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYC 550 (588)
Q Consensus 471 ~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l~~~~~~~~~~~~~~~~~~c~~c 550 (588)
||.++++|+||||||||.|++|.|++|++++.++..+.+|+++|.+++|++|++|.+++.+++. +...+.++.+||+||
T Consensus 498 MP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~-~~~a~~~~~kGCayC 576 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEE-ETIADAGGEKGCAYC 576 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccc-cccccCCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998776 577889999999999
Q ss_pred CCCCcccccCcchHHHHHHHhhc-CCCCccCCCC
Q 007831 551 GGLGHRIRDCPKLEHQKSMAIAS-SRRDYFGSGG 583 (588)
Q Consensus 551 g~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 583 (588)
||+||||++||||++++++++++ +|+||+++|+
T Consensus 577 gGLGHRItdCPKle~~~~k~~sn~gRkdy~~~~~ 610 (610)
T KOG0341|consen 577 GGLGHRITDCPKLEAQQNKQISNIGRKDYLGSGG 610 (610)
T ss_pred cCCCcccccCchhhhhcchhhhhhccccccCCCC
Confidence 99999999999999999999887 8999999875
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-80 Score=640.55 Aligned_cols=411 Identities=43% Similarity=0.737 Sum_probs=365.1
Q ss_pred CccccCCHHHHHHHHHhcCeEeecCC-CCCCCCCC-----------------------------CCCCCCHHHHHHHHHC
Q 007831 112 LPIRRMSKKACDLIRKQWHIIVDGED-IPPPIKNF-----------------------------KDMRFPEPILKKLKAK 161 (588)
Q Consensus 112 ~~~~~~~~~~~~~~r~~~~i~v~g~~-~p~p~~~f-----------------------------~~~~l~~~l~~~l~~~ 161 (588)
.....+...+....+.+..+.+.+.+ +|.|+.+| .++++++.+...++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ls~~~~~~lk~~ 109 (519)
T KOG0331|consen 30 PSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQELGLSEELMKALKEQ 109 (519)
T ss_pred cccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcccccHHHHHHHHhc
Confidence 33444444445555555566665544 56555544 4555666777778899
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
||..|||||.++||.+++|+|++++|.||||||++|+||+++++... ......+++|++|||+||||||.|+.+.+.+
T Consensus 110 g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~--~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 110 GFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNE--QGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhc--cccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998863 2233446799999999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHH
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
++..+ .+++.|++||.+...|...+.+|++|+||||+||++++..+.++|++|.|+|+||||+|++|||+++++
T Consensus 188 ~~~~~------~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~ 261 (519)
T KOG0331|consen 188 FGKSL------RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIR 261 (519)
T ss_pred HcCCC------CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHH
Confidence 98876 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCC--CcccceEEEeeehhhHHHHHHHHHHhhc----CC
Q 007831 322 EVFDHF-KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQK----TP 394 (588)
Q Consensus 322 ~i~~~~-~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~--~~~~~~~~~~~~~~~~~k~~~ll~~l~~----~~ 394 (588)
.|+..+ ++.+|++++|||||..++.++..++.+|+.+.++... .++.++.|.+..+...+|...+...|.. ..
T Consensus 262 ~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~ 341 (519)
T KOG0331|consen 262 KILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSE 341 (519)
T ss_pred HHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCC
Confidence 999999 6677999999999999999999999999999988664 6778888888888766665555555443 46
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC
Q 007831 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s 474 (588)
+++||||+|+..|+.|+..|+..++++.+|||+++|.+|..+++.|++|+..||||||+++||||+|+|++|||||+|.+
T Consensus 342 ~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~ 421 (519)
T KOG0331|consen 342 GKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNN 421 (519)
T ss_pred CcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhhccCc
Q 007831 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531 (588)
Q Consensus 475 ~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l~~~ 531 (588)
+++|+||+|||||+|++|.|++|++.. +...+..+++.+++++|.+|+.+..+...
T Consensus 422 vEdYVHRiGRTGRa~~~G~A~tfft~~-~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 422 VEDYVHRIGRTGRAGKKGTAITFFTSD-NAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred HHHHHhhcCccccCCCCceEEEEEeHH-HHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 999999999999999999999999998 78899999999999999999999887543
No 3
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.6e-80 Score=615.50 Aligned_cols=419 Identities=40% Similarity=0.716 Sum_probs=390.7
Q ss_pred cCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEE
Q 007831 105 LTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi 184 (588)
..||.. ..+..|++.+|..||..++|...|..+|+|+.+|++.+||..+++.+.+.||..|+|+|+++||..+..+|+|
T Consensus 208 drhW~~-k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~i 286 (673)
T KOG0333|consen 208 DRHWSE-KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPI 286 (673)
T ss_pred ccchhh-hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCee
Confidence 578875 5578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCC-CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007831 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMP-IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 185 i~a~TGsGKTl~~~lp~l~~~~~~~~~~~-~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
++|.||||||++|++|++..+.......+ .....||+++||+|||+||+|+.++-.+|+.++ +++++.++||.
T Consensus 287 gvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l------g~r~vsvigg~ 360 (673)
T KOG0333|consen 287 GVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL------GIRTVSVIGGL 360 (673)
T ss_pred eEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc------cceEEEEeccc
Confidence 99999999999999999988766443333 244579999999999999999999999999887 89999999999
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhh--------------
Q 007831 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA-------------- 329 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~-------------- 329 (588)
+..++--.+..||+|+||||++|.+.|.+..+.+++|.|||+||||+|+||||++++..++.+++.
T Consensus 361 s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~ 440 (673)
T KOG0333|consen 361 SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEE 440 (673)
T ss_pred chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHH
Confidence 999998899999999999999999999999999999999999999999999999999999998863
Q ss_pred -----------cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcC-CCCE
Q 007831 330 -----------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT-PPPV 397 (588)
Q Consensus 330 -----------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~-~~~v 397 (588)
.+|+++||||||+.+..+++.++.+|+.+.++..+....-+.|.+..+..+.+...|++.+.+. .+|+
T Consensus 441 ~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppi 520 (673)
T KOG0333|consen 441 RVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPI 520 (673)
T ss_pred HHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCE
Confidence 1799999999999999999999999999999999999999999999999999999999999875 7899
Q ss_pred EEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhH
Q 007831 398 LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 477 (588)
Q Consensus 398 iIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~ 477 (588)
|||+|+++.|+.|++.|.+.|+.+..+||+.+|++|..++..|++|..+||||||+++||||+|+|.+||||||++++++
T Consensus 521 IIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieD 600 (673)
T KOG0333|consen 521 IIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIED 600 (673)
T ss_pred EEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH-HhcccCchHHhhccCc
Q 007831 478 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ-EAKQRIPPVLAELNDP 531 (588)
Q Consensus 478 y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~p~~l~~l~~~ 531 (588)
|+||||||||+|+.|.|++|+++. +...+.+|+..+. ..+...|+.+....+.
T Consensus 601 YtHRIGRTgRAGk~GtaiSflt~~-dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 601 YTHRIGRTGRAGKSGTAISFLTPA-DTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred HHHHhccccccccCceeEEEeccc-hhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 999999999999999999999999 4556678877776 5567788888776654
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-77 Score=593.66 Aligned_cols=452 Identities=41% Similarity=0.628 Sum_probs=421.0
Q ss_pred cCCcccCCCcCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHH
Q 007831 96 KGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLP 175 (588)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~ 175 (588)
+.++|..+.+..|..+.+|..+.+.+.-.+|..+++.|.|...|.|+.+|+++++.+.|+.++.+..|.+|||+|.+++|
T Consensus 176 s~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalp 255 (731)
T KOG0339|consen 176 SEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALP 255 (731)
T ss_pred hhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccc
Confidence 35667666677888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCce
Q 007831 176 VVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLR 255 (588)
Q Consensus 176 ~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~ 255 (588)
..++|+||+.+|.||||||.+|+.|++.+++.+. .+..++||.+||+||||+||.|++.++++|++.. +++
T Consensus 256 talsgrdvigIAktgSgktaAfi~pm~~himdq~---eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y------gl~ 326 (731)
T KOG0339|consen 256 TALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP---ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY------GLR 326 (731)
T ss_pred cccccccchheeeccCcchhHHHHHHHHHhcchh---hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc------cce
Confidence 9999999999999999999999999999998754 3455799999999999999999999999999876 999
Q ss_pred EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEE
Q 007831 256 TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLL 335 (588)
Q Consensus 256 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~ 335 (588)
+++++||.+..+|...|+.|+.||||||+||++++..+..++.++.||||||||+|.++||+.+++.|..++.+++|+|+
T Consensus 327 ~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtll 406 (731)
T KOG0339|consen 327 VVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLL 406 (731)
T ss_pred EEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh-hHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHH
Q 007831 336 FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHE 412 (588)
Q Consensus 336 ~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~ 412 (588)
||||++..++.+++.+|.+|+.+..+..+.++..+.|.+..+. .+.|+..|+..|.+. .+++|||+..+..++.++.
T Consensus 407 FsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a 486 (731)
T KOG0339|consen 407 FSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAA 486 (731)
T ss_pred eeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHH
Confidence 9999999999999999999999999999999999999998775 567888899988775 4599999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCcc
Q 007831 413 YLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTG 492 (588)
Q Consensus 413 ~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g 492 (588)
.|+.+|+++..+||+|+|.+|.+++..|+.+...|||+||++++|+|||+++.|||||+-.+++.|.|||||+||+|.+|
T Consensus 487 ~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kG 566 (731)
T KOG0339|consen 487 NLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKG 566 (731)
T ss_pred HhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcccCchHHhhccCchh--hHHHHhhccCCCCCccCCCCCccc
Q 007831 493 IATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME--DVDAITNASGVKGCAYCGGLGHRI 557 (588)
Q Consensus 493 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l~~~~~--~~~~~~~~~~~~~c~~cg~~g~~~ 557 (588)
++++++++. +..+...|++.|+.++|.||+.|.+|+-... ...+....++.++....||+|+|-
T Consensus 567 vayTlvTeK-Da~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~~~~~gglgyr~ 632 (731)
T KOG0339|consen 567 VAYTLVTEK-DAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKGTGGGGGLGYRE 632 (731)
T ss_pred eeeEEechh-hHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCccccc
Confidence 999999999 5669999999999999999999999875443 333444556667777777888873
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.3e-72 Score=611.23 Aligned_cols=417 Identities=44% Similarity=0.713 Sum_probs=378.2
Q ss_pred cCCCCCCCccccCCHHHHHHHHHhcCeEe-ecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCE
Q 007831 105 LTGWKPPLPIRRMSKKACDLIRKQWHIIV-DGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDM 183 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~v-~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dv 183 (588)
+..|.++..+..++.++++.+|+...+.+ .|.++|+|+.+|++++||+.+++.|.++||.+|||+|.++||.+++|+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dv 170 (545)
T PTZ00110 91 KNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDM 170 (545)
T ss_pred hhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCE
Confidence 45667778889999999999999999886 79999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007831 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 ii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
|++||||||||++|++|++.++.... ....+.+|.+|||+|||+||.|+.+.+.++.... .+++.+++||.
T Consensus 171 I~~ApTGSGKTlaylLP~l~~i~~~~---~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~------~i~~~~~~gg~ 241 (545)
T PTZ00110 171 IGIAETGSGKTLAFLLPAIVHINAQP---LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS------KIRNTVAYGGV 241 (545)
T ss_pred EEEeCCCChHHHHHHHHHHHHHHhcc---cccCCCCcEEEEECChHHHHHHHHHHHHHHhccc------CccEEEEeCCC
Confidence 99999999999999999998876532 1223468999999999999999999999997654 78899999999
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchH
Q 007831 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
+...+...+.++++|+|+||++|.+++.+....++++++|||||||+|++++|..+++.++..+++.+|+++||||+|..
T Consensus 242 ~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~ 321 (545)
T PTZ00110 242 PKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKE 321 (545)
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCeEEEecCCC-CcccceEEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcC
Q 007831 344 IQNFARSALV-KPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 344 i~~~~~~~l~-~p~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
++.+++.++. .++.+.++... ....++.+.+..+....+...+...+.. ...++||||+++..|+.++..|...|
T Consensus 322 v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g 401 (545)
T PTZ00110 322 VQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG 401 (545)
T ss_pred HHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC
Confidence 9999998886 57777776554 3345667777666666665555555543 56799999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEe
Q 007831 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~ 498 (588)
+.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|+
T Consensus 402 ~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 402 WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhcccCchHHhhccCc
Q 007831 499 NKNQSETTLLDLKHLLQEAKQRIPPVLAELNDP 531 (588)
Q Consensus 499 ~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l~~~ 531 (588)
+++ +...+.+|.+++.+++|.+|++|.++...
T Consensus 482 ~~~-~~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 513 (545)
T PTZ00110 482 TPD-KYRLARDLVKVLREAKQPVPPELEKLSNE 513 (545)
T ss_pred Ccc-hHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 987 67889999999999999999999988543
No 6
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-74 Score=557.40 Aligned_cols=421 Identities=38% Similarity=0.635 Sum_probs=378.7
Q ss_pred CCc-CCCCCCCccccCCHHHHHHHHHhc-CeEee----cC--CCCCCCCCCCCC-CCCHHHHHHHHHCCCCCCcHHHHHH
Q 007831 103 PLL-TGWKPPLPIRRMSKKACDLIRKQW-HIIVD----GE--DIPPPIKNFKDM-RFPEPILKKLKAKGIVQPTPIQVQG 173 (588)
Q Consensus 103 ~~~-~~~~~~~~~~~~~~~~~~~~r~~~-~i~v~----g~--~~p~p~~~f~~~-~l~~~l~~~l~~~g~~~p~~~Q~~~ 173 (588)
|+. ..|..+.+...||+.+++..|+.. +|.++ |+ .+|+|..+|++. .--+++++.+++.||.+|||+|.|+
T Consensus 171 Pi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQa 250 (629)
T KOG0336|consen 171 PIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQA 250 (629)
T ss_pred chhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcc
Confidence 554 567788899999999999998885 56553 32 489999999884 5779999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCC
Q 007831 174 LPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD 253 (588)
Q Consensus 174 i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 253 (588)
||.+|+|.|+|++|.||+|||++|++|.+.++..+.. +.....+|.+|++.|||+||.|+.-+..++. +.+
T Consensus 251 WPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~--~~~qr~~p~~lvl~ptreLalqie~e~~kys-------yng 321 (629)
T KOG0336|consen 251 WPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK--RREQRNGPGVLVLTPTRELALQIEGEVKKYS-------YNG 321 (629)
T ss_pred cceeecCcceEEEEecCCCcCHHHhccceeeeeccch--hhhccCCCceEEEeccHHHHHHHHhHHhHhh-------hcC
Confidence 9999999999999999999999999999887765432 2335678999999999999999999888874 458
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhccee
Q 007831 254 LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQT 333 (588)
Q Consensus 254 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~ 333 (588)
++.++++||.+..++...+++|.+|+++||++|.++...+.+++.++.|||+||||+|+||||+.++++|+--+.+++|+
T Consensus 322 ~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqt 401 (629)
T KOG0336|consen 322 LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQT 401 (629)
T ss_pred cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccchHHHHHHHHhcCCCeEEEecCCCCcc-cceEEEeeehhhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHH
Q 007831 334 LLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN-LDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDI 410 (588)
Q Consensus 334 l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~-~~~~~~~~~~~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l 410 (588)
++.|||||+.+..++.+++.+|+.+.++...... ..+.|.+....++.++..+-.++.. ...++||||..+..++.|
T Consensus 402 vmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~L 481 (629)
T KOG0336|consen 402 VMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHL 481 (629)
T ss_pred eeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhc
Confidence 9999999999999999999999999998877544 4566666444455666544445544 356999999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCC
Q 007831 411 HEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 411 ~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~ 490 (588)
...|...|+.+..+||+.+|.+|+.+++.|++|+++||||||+++||||++++.||+|||+|.+++.|+||+||+||+|+
T Consensus 482 SSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 482 SSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred cchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhhccCchh
Q 007831 491 TGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533 (588)
Q Consensus 491 ~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l~~~~~ 533 (588)
+|.+++|++.+ +...+..|.++|+++.|.||+.|..++..+.
T Consensus 562 ~G~sis~lt~~-D~~~a~eLI~ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 562 TGTSISFLTRN-DWSMAEELIQILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred CcceEEEEehh-hHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 99999999998 7889999999999999999999999887654
No 7
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-72 Score=546.97 Aligned_cols=360 Identities=38% Similarity=0.613 Sum_probs=336.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007831 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
...+|.++++.+.++++++..||..||++|.++||.++.|+|+|+.|.||||||.+|+||+++.++++ ...+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~--------p~~~ 130 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE--------PKLF 130 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC--------CCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999884 2458
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH-cccCCCCC
Q 007831 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA-KKKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~-~~~~~l~~ 299 (588)
++||++||||||.|+.+.++.+...+ ++++.++.||.++..+...+.+.+||+|||||+|.+++. .+.+++..
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i------glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~ 204 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI------GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQ 204 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc------CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHH
Confidence 99999999999999999999998877 999999999999999999999999999999999999999 47889999
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh
Q 007831 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 379 (588)
++|+|+||||+++++.|.+.+..|+..++..+|+++||||||.++..+.+..+.+|+.+.+.........+.|.+.+++.
T Consensus 205 lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 205 LKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred hHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888889999999988
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007831 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
..|-.+|+..+.+ .+.++||||++...++.++-.|...|+.+..+||.|+|..|.-+++.|++|..+||||||+++||+
T Consensus 285 k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGL 364 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGL 364 (476)
T ss_pred cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccC
Confidence 8887777777766 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH
Q 007831 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
|+|.|++|||||+|.+..+|+||+||+||+|..|.+|+|++.. +-.....+...+.
T Consensus 365 Dip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqy-Dve~~qrIE~~~g 420 (476)
T KOG0330|consen 365 DIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQY-DVELVQRIEHALG 420 (476)
T ss_pred CCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehh-hhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999986 4444444444444
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9e-70 Score=589.42 Aligned_cols=415 Identities=33% Similarity=0.567 Sum_probs=372.8
Q ss_pred CCCCCCCcc-ccCCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEE
Q 007831 106 TGWKPPLPI-RRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMI 184 (588)
Q Consensus 106 ~~~~~~~~~-~~~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi 184 (588)
..|...... ..++..+++.+|+..+|.+.|.++|+|+.+|+++++|+.+++.|.+.||..|||+|.++||.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dvi 162 (518)
T PLN00206 83 CFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLL 162 (518)
T ss_pred cCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEE
Confidence 344443333 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcc
Q 007831 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264 (588)
Q Consensus 185 i~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~ 264 (588)
++||||||||++|++|++.++....... .....++++|||+|||+||.|+++.+..+...+ ++++..++||..
T Consensus 163 v~ApTGSGKTlayllPil~~l~~~~~~~-~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~------~~~~~~~~gG~~ 235 (518)
T PLN00206 163 VSADTGSGKTASFLVPIISRCCTIRSGH-PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL------PFKTALVVGGDA 235 (518)
T ss_pred EEecCCCCccHHHHHHHHHHHHhhcccc-ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC------CceEEEEECCcc
Confidence 9999999999999999998876432111 112367899999999999999999999887654 688899999999
Q ss_pred hHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 265 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 265 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...+...+..+++|+|+||++|.+++.+....++++++|||||||+|+++||..++..++..++ .+|+++||||+++.+
T Consensus 236 ~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v 314 (518)
T PLN00206 236 MPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEV 314 (518)
T ss_pred hHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHH
Confidence 8888888889999999999999999999888999999999999999999999999999998884 679999999999999
Q ss_pred HHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHH-cCCc
Q 007831 345 QNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLL-KGVE 420 (588)
Q Consensus 345 ~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~-~g~~ 420 (588)
..++..++.+++.+.++.....+..+.+.+.++....+...++..+.. ..+++||||+++..++.+++.|.. .|+.
T Consensus 315 ~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~ 394 (518)
T PLN00206 315 EKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLK 394 (518)
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcc
Confidence 999999999999998887776677777777777766666666666653 346899999999999999999975 6999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecC
Q 007831 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 421 ~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~ 500 (588)
+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++|||||+|.++++|+||+|||||.|..|.+++|++.
T Consensus 395 ~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~ 474 (518)
T PLN00206 395 ALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNE 474 (518)
T ss_pred eEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHhcccCchHHhhcc
Q 007831 501 NQSETTLLDLKHLLQEAKQRIPPVLAELN 529 (588)
Q Consensus 501 ~~~~~~~~~l~~~l~~~~~~~p~~l~~l~ 529 (588)
+ +...+.++.+.++.+++.+|++|..+.
T Consensus 475 ~-~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 475 E-DRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred h-HHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 7 677899999999999999999998765
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-71 Score=560.54 Aligned_cols=392 Identities=42% Similarity=0.731 Sum_probs=366.8
Q ss_pred EeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhccc
Q 007831 132 IVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMM 211 (588)
Q Consensus 132 ~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~ 211 (588)
.+.|.++|+++.+|.+-.+...+...++..|+..|||+|+.+||.+..|+|++++|+||||||.+|++|++.++++....
T Consensus 63 ~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~ 142 (482)
T KOG0335|consen 63 KVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPE 142 (482)
T ss_pred eccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCCCCC--CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHH
Q 007831 212 MPIVPGE--GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDM 289 (588)
Q Consensus 212 ~~~~~~~--~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~ 289 (588)
.+..... .|.+||++||||||.|++++.+++.... .++++.++||.+...+...+.++|+|+|||||+|.++
T Consensus 143 ~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s------~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~ 216 (482)
T KOG0335|consen 143 DRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS------GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDL 216 (482)
T ss_pred cCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc------cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhh
Confidence 4443333 5999999999999999999999997644 8999999999999999999999999999999999999
Q ss_pred HHcccCCCCCcceeEecCcccccc-cCcHHHHHHHHHhhhh----cceeEEEecccchHHHHHHHHhcCC-CeEEEecCC
Q 007831 290 LAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRA 363 (588)
Q Consensus 290 l~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~----~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~ 363 (588)
+..+.+.++.|+|+|+||||+|+| ++|+++++.|+..... .+|+++||||+|..++.++..++.+ .+.+.++..
T Consensus 217 ~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv 296 (482)
T KOG0335|consen 217 IERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV 296 (482)
T ss_pred hhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee
Confidence 999999999999999999999999 9999999999998754 7899999999999999999988886 889999999
Q ss_pred CCcccceEEEeeehhhHHHHHHHHHHhhcCC----------CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHH
Q 007831 364 GAANLDVIQEVEYVKQEAKIVYLLECLQKTP----------PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEER 433 (588)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~----------~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R 433 (588)
+..+.++.|.+.++....+..+|++.+.... ..++|||+++..|+.++..|...++++..+||..+|.+|
T Consensus 297 g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 297 GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 9999999999999999999999999887422 269999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHH
Q 007831 434 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 434 ~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
..+++.|++|++.+||||++++||||+|+|+||||||+|.+..+|+||||||||.|+.|.++.|++.. +......|.++
T Consensus 377 ~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~-~~~i~~~L~~~ 455 (482)
T KOG0335|consen 377 EQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK-NQNIAKALVEI 455 (482)
T ss_pred HHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc-cchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999955 78899999999
Q ss_pred HHHhcccCchHHhhccC
Q 007831 514 LQEAKQRIPPVLAELND 530 (588)
Q Consensus 514 l~~~~~~~p~~l~~l~~ 530 (588)
+.+++|.+|+||.++..
T Consensus 456 l~ea~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 456 LTEANQEVPQWLSELSR 472 (482)
T ss_pred HHHhcccCcHHHHhhhh
Confidence 99999999999998544
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-71 Score=549.13 Aligned_cols=360 Identities=36% Similarity=0.575 Sum_probs=328.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..+|.+|+|+.++++++...||..|||||..+||.++-|+|++.+|-||||||.+|++|+|..++..... ....+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----Cccee
Confidence 4589999999999999999999999999999999999999999999999999999999999988764221 24568
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCCCCCc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMNLDNC 300 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~l~~~ 300 (588)
||||||||+||.|++...++++... +|.++++.||.+.+.|...++..+||||||||||+|++.+ ..++++++
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt------~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT------DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc------cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccce
Confidence 9999999999999999999998765 8999999999999999999999999999999999999987 47889999
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh-
Q 007831 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ- 379 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~- 379 (588)
.++|+||||+|++.||.+++..|++.++..+|+++|||||+..+.+++.-.|.+|+.+.++........+.|++..+..
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~ 408 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPK 408 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988888888888876642
Q ss_pred --HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007831 380 --EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 380 --~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 456 (588)
..+-..+..++.. ....+|||+.|++.|..+.-.|-..|+.++-+||.++|.+|.+.++.|++++++||||||+++|
T Consensus 409 re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsR 488 (691)
T KOG0338|consen 409 REGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASR 488 (691)
T ss_pred cccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhc
Confidence 1122222233322 3568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHH
Q 007831 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
||||++|.+||||.||.+++.|+||+|||.|+|+.|.+++|+.++ +...+..+.+.
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccc-cHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998 66666666554
No 11
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-70 Score=589.82 Aligned_cols=429 Identities=39% Similarity=0.642 Sum_probs=401.1
Q ss_pred hcCCcccCCCcCCCCCCCccccCCHHHHHHHHHhcC-eEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHH
Q 007831 95 AKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWH-IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQG 173 (588)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~ 173 (588)
-..+.|.++-+++|....++..|+.++++.+|.... |.+.|.++|.|+.+|.+.+++..++..+++.||.+|+|||.+|
T Consensus 316 ~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qA 395 (997)
T KOG0334|consen 316 HSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQA 395 (997)
T ss_pred cccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhh
Confidence 356667666666677889999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCC
Q 007831 174 LPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD 253 (588)
Q Consensus 174 i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 253 (588)
||+|++|+|||++|.||||||++|+||++.+... ..+...+.||.+|||+|||+||.|+++.+.+|+..+ +
T Consensus 396 iP~ImsGrdvIgvakTgSGKT~af~LPmirhi~d---Qr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l------~ 466 (997)
T KOG0334|consen 396 IPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKD---QRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL------G 466 (997)
T ss_pred cchhccCcceEEeeccCCccchhhhcchhhhhhc---CCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc------C
Confidence 9999999999999999999999999999976654 456666789999999999999999999999999887 9
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc---CCCCCcceeEecCcccccccCcHHHHHHHHHhhhhc
Q 007831 254 LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 330 (588)
Q Consensus 254 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~---~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~ 330 (588)
+++++++||.....++..+++|+.|+|||||+++|++..+. .++.++.|+|+||||+|+++||.+++..|+..+++.
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpd 546 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPD 546 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchh
Confidence 99999999999999999999999999999999999997654 456677799999999999999999999999999999
Q ss_pred ceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh-hHHHHHHHHHHhhc--CCCCEEEEeCccccH
Q 007831 331 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQK--TPPPVLIFCENKADV 407 (588)
Q Consensus 331 ~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~ll~~l~~--~~~~viIF~~s~~~~ 407 (588)
+|+++||||+|..+..+++..+..|+.+.++..+..+.++.|.+..+. ...|+..|++.|.. ...++||||.+...|
T Consensus 547 rQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~ 626 (997)
T KOG0334|consen 547 RQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKA 626 (997)
T ss_pred hhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHH
Confidence 999999999999999999999999999999999899999999999888 88899999888875 467999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhccccc
Q 007831 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 487 (588)
Q Consensus 408 ~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR 487 (588)
+.+.+.|.+.|+.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|++++.+|||||+|...++|+||.|||||
T Consensus 627 d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 627 DALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred HHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhhccCchh
Q 007831 488 CGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533 (588)
Q Consensus 488 ~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l~~~~~ 533 (588)
+|++|.|++|+.+. +..+..+|.+.+...++.+|..|..|...+.
T Consensus 707 agrkg~AvtFi~p~-q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~ 751 (997)
T KOG0334|consen 707 AGRKGAAVTFITPD-QLKYAGDLCKALELSKQPVPKLLQALSERFK 751 (997)
T ss_pred CCccceeEEEeChH-HhhhHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 99999999999995 7889999999999999999999988876643
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-68 Score=574.82 Aligned_cols=364 Identities=41% Similarity=0.686 Sum_probs=333.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.++++|.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|++..+.... ......+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVSA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCce
Confidence 6899999999999999999999999999999999999999999999999999999999999965320 0111129
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
||++||||||.|+++.+..+.... +++++.+++||.+...+...+.+++||||+||+||+|++.++.+.++.+.+
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~-----~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNL-----GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhc-----CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999999998754 168899999999999999999999999999999999999999999999999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCC--cccceEEEeeehhhH
Q 007831 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA--ANLDVIQEVEYVKQE 380 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~--~~~~~~~~~~~~~~~ 380 (588)
+|+||||+|+++||.+++..|+..++.++|+++||||+|..+..+++.++.+|..+.+..... ....+.|.+..+...
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCH
Confidence 999999999999999999999999999999999999999999999999999999888875554 778889988888876
Q ss_pred H-HHHHHHHHhhcCC-CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007831 381 A-KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 381 ~-k~~~ll~~l~~~~-~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
. |+..|...+.... .++||||+++..++.++..|...|+.+..+||+++|.+|.++++.|++|+.+||||||+++|||
T Consensus 258 ~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 258 EEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 5 8888888877643 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHh
Q 007831 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA 517 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~ 517 (588)
|+|+|++|||||+|.+++.|+||+|||||+|..|.+++|+++..+...+..+.+.+...
T Consensus 338 Di~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 338 DIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999854667777777776444
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-67 Score=487.97 Aligned_cols=374 Identities=31% Similarity=0.546 Sum_probs=345.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCC
Q 007831 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGE 218 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 218 (588)
-.++.+|++|++.+.++++++..||++|+.+|+.||+.++.|+|+|++|..|+|||.+|.+.+++.+-- ..+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~--------~~r 94 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI--------SVR 94 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc--------ccc
Confidence 457889999999999999999999999999999999999999999999999999999998888865432 124
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCC
Q 007831 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLD 298 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~ 298 (588)
...+||+.||||||.|+.+.+..+..++ ++.+..++||.+..+.+..+..|.+++.+|||++.+++.+..+..+
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~m------nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr 168 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYM------NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTR 168 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccc------cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccc
Confidence 5689999999999999999999998877 9999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK 378 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~ 378 (588)
.++++|+||||.|++.||..++-.+++.+++..|++++|||+|..+.+....++.+|+.+.+.+.+.....+.|.+..+.
T Consensus 169 ~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred ceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777888887776
Q ss_pred hHH-HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007831 379 QEA-KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 379 ~~~-k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 456 (588)
.+. |+..|...... .-.+.+|||+|+..++.+.+.++...+.+.++||+|+|++|..+++.|++|+.+||++||+.+|
T Consensus 249 ~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaR 328 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWAR 328 (400)
T ss_pred hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhc
Confidence 655 77777665543 3458999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhh
Q 007831 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 527 (588)
|+|+|.|++|||||+|.+.+.|+|||||.||.|++|.|+-|+..+ +-..+.++.+.+.....++|..+.+
T Consensus 329 GiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~-d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 329 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred cCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHH-HHHHHHHHHHHHhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999887 6777888888888777777766554
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4e-65 Score=508.83 Aligned_cols=362 Identities=35% Similarity=0.577 Sum_probs=327.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
...|++..|++..++++..+||..+|++|...|+.++.|+|+++.|.||||||++|++|++..++... +.+.++..
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~----~~~r~~~~ 156 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK----FKPRNGTG 156 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcc----cCCCCCee
Confidence 44688899999999999999999999999999999999999999999999999999999999987753 33446778
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNC 300 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-~~~l~~~ 300 (588)
+|||||||+||.|++.+++++.... +.+.+..++||++.......+.++++|+|||||||.|++.+. .+.+..+
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h-----~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~ 231 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYH-----ESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNL 231 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhC-----CCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcc
Confidence 9999999999999999999998753 478999999999999998999899999999999999999984 4556778
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCC-CeEEEecCCC--CcccceEEEeeeh
Q 007831 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRAG--AANLDVIQEVEYV 377 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~--~~~~~~~~~~~~~ 377 (588)
+++|+||||+++++||+..+..|+..++.++|+++||||.|++++++++..+.. |+.+++...+ .....+.|-+...
T Consensus 232 k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~ 311 (543)
T KOG0342|consen 232 KCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVA 311 (543)
T ss_pred ceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEec
Confidence 899999999999999999999999999999999999999999999999988875 7777765544 4445677766677
Q ss_pred hhHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007831 378 KQEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~ 455 (588)
..+.++..+..++++. ..++||||+|...+..+++.|....++|..+||+++|..|..+..+|+..+.-||||||+++
T Consensus 312 ~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA 391 (543)
T KOG0342|consen 312 PSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA 391 (543)
T ss_pred cccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh
Confidence 7777778888888764 36999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHH
Q 007831 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
||+|+|+|++||+||+|.++++|+||+|||||.|+.|.++.|+.++ +..++..|+++
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~-El~Flr~LK~l 448 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPW-ELGFLRYLKKL 448 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChh-HHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999998 67777777633
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-63 Score=531.23 Aligned_cols=364 Identities=34% Similarity=0.538 Sum_probs=323.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
-.+|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..+...... ......+++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~-~~~~~~~~~ 85 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP-EDRKVNQPR 85 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc-cccccCCce
Confidence 3589999999999999999999999999999999999999999999999999999999999988753211 111134689
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
+|||+||++||.|+++.+..+.... ++++..++||.+...+...+..+++|+|+||++|.+++.+..+.++.++
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~------~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQAT------GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 9999999999999999999998765 7899999999988888888888999999999999999998888999999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhh--cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 379 (588)
+|||||||+|++++|...+..++..++. .+++++||||++..+..++...+.+|..+.+.........+.+.+.+...
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~ 239 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN 239 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH
Confidence 9999999999999999999999999874 56789999999999999999999999888877665555666666666666
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007831 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
..+...+...+.. ...++||||+++..|+.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++||
T Consensus 240 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 240 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 7777777776655 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHH
Q 007831 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
|+|++++|||||+|.+++.|+||+|||||.|+.|.+++|+++. +...+..+.+.
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~-~~~~~~~i~~~ 373 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE-YALNLPAIETY 373 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 34344444333
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-63 Score=492.40 Aligned_cols=350 Identities=34% Similarity=0.578 Sum_probs=313.9
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 144 NFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 144 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+|++++ |+++++.++...||..+||+|..+||.+++++|+++-|+||||||+||++|++..+.......+- .---
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~---~~vg 81 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP---GQVG 81 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc---ccee
Confidence 566665 45999999999999999999999999999999999999999999999999999988664322110 1235
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHccc--CCCC
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKK--MNLD 298 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~--~~l~ 298 (588)
+|||+||||||.|+.+.+..|..++ +++++.+++||.+..+.+..+. .++.|+|+|||||.+++.+.. +++.
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l-----~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~r 156 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHL-----PNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFR 156 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhh-----hccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccc
Confidence 7999999999999999999998774 6899999999999988888775 578999999999999999854 4455
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCC--cccceEEEeee
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA--ANLDVIQEVEY 376 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~--~~~~~~~~~~~ 376 (588)
++.++|+||||++++|||...++.|++.+|.++++=+||||....+.++.+..+.||+.+.++.... ....+...+..
T Consensus 157 sLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v 236 (567)
T KOG0345|consen 157 SLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLV 236 (567)
T ss_pred ccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeE
Confidence 9999999999999999999999999999999999999999999999999999999999999887664 33345555666
Q ss_pred hhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007831 377 VKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 377 ~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~ 453 (588)
+..+.|+..+++++.. ...++|||.+|...++.....|... .+++..+||.|++..|..++..|+...-.||+|||+
T Consensus 237 ~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDV 316 (567)
T KOG0345|consen 237 CEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDV 316 (567)
T ss_pred ecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehh
Confidence 7888999999999877 4579999999999999999888664 788999999999999999999999988999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++||||||++++||+||+|.++..|+||+|||||+|+.|.|++|+.+.
T Consensus 317 aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 317 AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEeccc
Confidence 999999999999999999999999999999999999999999999996
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.8e-62 Score=526.01 Aligned_cols=363 Identities=39% Similarity=0.639 Sum_probs=323.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007831 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+|++++|++.++++|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|++..+...... ......+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEE
Confidence 68999999999999999999999999999999999999999999999999999999999987653211 0112345899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007831 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~l 303 (588)
||+||++||.|+.+.+..+...+ ++++..++||.+...+...+..+++|+|+||++|.+++....+.++++++|
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~------~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL------NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC------CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 99999999999999999997654 789999999999988888888889999999999999998888889999999
Q ss_pred EecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHH
Q 007831 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383 (588)
Q Consensus 304 ViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~ 383 (588)
||||||+|++++|...++.++..++..+|+++||||+++.+..++..++.+|..+.+.........+.+.+.++....+.
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887766655566677777777766665
Q ss_pred HHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC
Q 007831 384 VYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 384 ~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~ 462 (588)
..+...+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~ 313 (456)
T PRK10590 234 ELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 313 (456)
T ss_pred HHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCccc
Confidence 555555544 3468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH
Q 007831 463 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 463 v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
+++||||++|.++++|+||+|||||.|..|.+++|+... +...+..+.+.+.
T Consensus 314 v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~-d~~~~~~ie~~l~ 365 (456)
T PRK10590 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVD-EHKLLRDIEKLLK 365 (456)
T ss_pred CCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHH-HHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999887 5555666655543
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.7e-62 Score=524.30 Aligned_cols=357 Identities=36% Similarity=0.587 Sum_probs=322.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..+... ..++++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--------~~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--------RFRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--------cCCceE
Confidence 479999999999999999999999999999999999999999999999999999999999886432 235689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
|||+||++||.|+.+.++.+.... +++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~-----~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFI-----PNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNT 150 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCE
Confidence 999999999999999999986532 478899999999999999999999999999999999999988888999999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHH
Q 007831 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k 382 (588)
||+||||+|++++|...+..++..++..+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.+..+....+
T Consensus 151 lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k 229 (460)
T PRK11776 151 LVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDER 229 (460)
T ss_pred EEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999888776543 33446666666666667
Q ss_pred HHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007831 383 IVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 383 ~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip 461 (588)
+..+...+.. .+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 230 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 230 LPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchh
Confidence 7777777755 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007831 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
++++||+||+|.+++.|+||+|||||+|+.|.+++|+.+. +...+..+.+.+
T Consensus 310 ~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~-e~~~~~~i~~~~ 361 (460)
T PRK11776 310 ALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPE-EMQRANAIEDYL 361 (460)
T ss_pred cCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchh-HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887 444555555544
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.5e-62 Score=530.14 Aligned_cols=364 Identities=35% Similarity=0.555 Sum_probs=323.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..++...... .....++++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceE
Confidence 4699999999999999999999999999999999999999999999999999999999999876532110 011236899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCcc
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-~~~l~~~~ 301 (588)
|||+||++||.|+++.+.++...+ ++++..++||.+...+...+..+++|+|+||++|.+++.+. .+.+..++
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~------~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~ 161 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL------GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhhee
Confidence 999999999999999999998765 78999999999998888888888999999999999998765 46788999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhh--cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 379 (588)
+|||||||+|++++|...+..++..++. .+|+++||||++..+..+...++..|..+.+.........+.+.+.....
T Consensus 162 ~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 162 ICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD 241 (572)
T ss_pred eeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH
Confidence 9999999999999999999999999886 78999999999999999999999888777666555555567777777777
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007831 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
..++..++..+.. .+.++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 242 ~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 242 EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 7788778777765 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007831 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
|+|++++|||||+|.++++|+||+|||||.|..|.+++|+++. +...+.++.+.+
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~i~~~~ 376 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPDIEAYI 376 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 444455555443
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.1e-62 Score=533.45 Aligned_cols=355 Identities=36% Similarity=0.582 Sum_probs=322.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|++..+... ..++++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--------~~~~~~ 77 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--------LKAPQI 77 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--------cCCCeE
Confidence 469999999999999999999999999999999999999999999999999999999999876442 246899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
|||+||++||.|+++.+..+...+ ++++++.++||.+...+...+..+++|||+||++|.+++.+..+.++++++
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~-----~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~ 152 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHM-----RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSG 152 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhc-----CCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 999999999999999999987643 478999999999998888888899999999999999999998889999999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHH
Q 007831 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 382 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k 382 (588)
|||||||.|++++|...+..++..++..+|+++||||+|+.+..+.+.++.+|..+.+.........+.+.+..+....+
T Consensus 153 lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k 232 (629)
T PRK11634 153 LVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRK 232 (629)
T ss_pred EEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhH
Confidence 99999999999999999999999999999999999999999999999999999888777665556667776666666677
Q ss_pred HHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007831 383 IVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 383 ~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip 461 (588)
...+...+... ..++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 233 ~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip 312 (629)
T PRK11634 233 NEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 312 (629)
T ss_pred HHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcc
Confidence 77777776543 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHH
Q 007831 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLK 511 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~ 511 (588)
+|++|||||+|.+++.|+||+|||||.|+.|.+++|+++. +...+..+.
T Consensus 313 ~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~-e~~~l~~ie 361 (629)
T PRK11634 313 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR-ERRLLRNIE 361 (629)
T ss_pred cCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999876 333444443
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-63 Score=474.28 Aligned_cols=346 Identities=35% Similarity=0.543 Sum_probs=309.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..+|..+++++++.+.|+.+|+.+|||+|..+||.||.|+|+|++|.||||||.+|.+|+++.+.+. ..|-+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed--------P~giF 77 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED--------PYGIF 77 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC--------CCcce
Confidence 4689999999999999999999999999999999999999999999999999999999999988664 36889
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc----cCCC
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK----KMNL 297 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~----~~~l 297 (588)
+||+.|||+||.|+.+.|..+.+.+ ++++.+++||.+.-.+...+.+.+|+||+||||+.+++..+ ...+
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l------~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~ 151 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLL------NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIF 151 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccc------cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhh
Confidence 9999999999999999999998877 99999999999999998999999999999999999999875 3457
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCe--EEEecCCCCcccceEEEee
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV--TVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~--~i~~~~~~~~~~~~~~~~~ 375 (588)
++++++|+||||++++..|.+.+..+++.+|..+|+++||||+++.+..+..-...++. .+...........+.|.+.
T Consensus 152 ~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 152 QRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred hceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 89999999999999999999999999999999999999999999988776654444432 2222222233344566667
Q ss_pred ehhhHHHHHHHHHHhhc----CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc
Q 007831 376 YVKQEAKIVYLLECLQK----TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT 451 (588)
Q Consensus 376 ~~~~~~k~~~ll~~l~~----~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT 451 (588)
.++...+-.|+...+.. ....++||+++...|+.++..|...++.+..+||.|+|.+|..++.+|+++..+|||||
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 77777776677666643 35689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 452 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 452 ~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|+++||+|||.|++|||||+|.++.+|+||+||++|+|+.|.++.|++..
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~r 361 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQR 361 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechh
Confidence 99999999999999999999999999999999999999999999999976
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-63 Score=495.57 Aligned_cols=360 Identities=35% Similarity=0.558 Sum_probs=328.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+..|.+++++.+.+++|++.+|..||.+|.++||.+|.|+|+++.|.||||||++|++|+|..++...+. +..|--
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGlG 143 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGLG 143 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC----CCCCce
Confidence 4579999999999999999999999999999999999999999999999999999999999999876543 456778
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNC 300 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-~~~l~~~ 300 (588)
+|||.|||+||.|+++.+.+.+.+. .+.+++++||.+.......+. +.+|+|||||||+.++..+ .++.+++
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h------~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHH------DFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhcc------ccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 9999999999999999999998765 899999999998777666554 4899999999999998864 6778899
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCC--CCcccceEEEeeehh
Q 007831 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA--GAANLDVIQEVEYVK 378 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~--~~~~~~~~~~~~~~~ 378 (588)
.++|+||||+|++|||...+..|++.+|..+|+++||||.+..+.++++-.+.+|..|.+... .+...++.|.+..+.
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999887632 244556778888888
Q ss_pred hHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007831 379 QEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~ 455 (588)
.+.|+..|..++..+ ..++|||+.|.+.+..+++.+... |++..++||+|+|..|..+...|...+.-||+|||+++
T Consensus 297 l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~a 376 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAA 376 (758)
T ss_pred hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhh
Confidence 999999999999875 558999999999999999999765 89999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHH
Q 007831 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
||+|||.|++||.+|+|.++++|+||+||++|.+..|.+++++.+...+..+..|.+
T Consensus 377 RGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 377 RGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred ccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999965666665544
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-64 Score=474.61 Aligned_cols=367 Identities=30% Similarity=0.536 Sum_probs=332.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
-..|+++.|...++..+.++||.+|+|+|.++||.+++|+|++.-|..|+|||.+|++|++..+-.. ...-.
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--------~~~IQ 155 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--------KNVIQ 155 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--------cccee
Confidence 3579999999999999999999999999999999999999999999999999999999999876432 34668
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
++|++|||+||.|+...+..+.+++ ++.+...+||++.++.+-.+...+|++|+||||++|+..++--.++.|.
T Consensus 156 ~~ilVPtrelALQtSqvc~~lskh~------~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 156 AIILVPTRELALQTSQVCKELSKHL------GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred EEEEeecchhhHHHHHHHHHHhccc------CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhce
Confidence 9999999999999999999999887 8999999999999999888899999999999999999999988999999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHH
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 381 (588)
++|+||||.+++..|...+..++..+|..+|++++|||+|-.+..|..+++.+|..++.-.. .....+.|.+.++.+..
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~q 308 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQ 308 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhh
Confidence 99999999999999999999999999999999999999999999999999999999886544 55678889999999888
Q ss_pred HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC
Q 007831 382 KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF 460 (588)
Q Consensus 382 k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDi 460 (588)
|+.-|-..+.+ .-.+.||||++.+.++.++..+.+.|+.+..+|+.|.|+.|.++...|++|.++.|||||.+.||||+
T Consensus 309 KvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi 388 (459)
T KOG0326|consen 309 KVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI 388 (459)
T ss_pred hhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc
Confidence 87665554443 34579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchH
Q 007831 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~ 524 (588)
++|++|||||+|++.+.|+||+||+||.|.-|.|+.+++.+ +.-.+..+..-|......+|+.
T Consensus 389 qavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLitye-drf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 389 QAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYE-DRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehh-hhhhHHHHHHHhccccccCCCc
Confidence 99999999999999999999999999999999999999988 4444455554444444555543
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3e-60 Score=507.80 Aligned_cols=360 Identities=34% Similarity=0.564 Sum_probs=319.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007831 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+|+++++++.+++.|.+.||..|+++|.++|+.++.|+|++++||||+|||++|++|++.++... +.....++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~----~~~~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDF----PRRKSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhc----cccCCCCceEE
Confidence 68999999999999999999999999999999999999999999999999999999999988652 11123457899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007831 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~l 303 (588)
||+||++||.|+++.+..+.... ++++..++||.....+...+..+++|+|+||++|.+++....+.+.++++|
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~------~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHT------HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccC------CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 99999999999999999998655 789999999999988888888889999999999999999988889999999
Q ss_pred EecCcccccccCcHHHHHHHHHhhhhcceeEEEecccch-HHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh-HH
Q 007831 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT-KIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ-EA 381 (588)
Q Consensus 304 ViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~-~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~ 381 (588)
||||||+|++++|...+..+...++..+|+++||||++. .+..+...++.+|+.+...........+.+.+..... ..
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 231 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEH 231 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHH
Confidence 999999999999999999999999888999999999985 5888888888899888776665555556666555543 44
Q ss_pred HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC
Q 007831 382 KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF 460 (588)
Q Consensus 382 k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDi 460 (588)
+...+...+.. ...++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 232 k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 232 KTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 55555555554 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007831 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
|++++|||||+|.+.+.|+||+|||||.|..|.+++|+... +...+..+.+++
T Consensus 312 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~-d~~~~~~i~~~~ 364 (434)
T PRK11192 312 DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAH-DHLLLGKIERYI 364 (434)
T ss_pred CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 455555555544
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-61 Score=480.83 Aligned_cols=363 Identities=33% Similarity=0.562 Sum_probs=315.2
Q ss_pred CCCCCCCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007831 142 IKNFKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
-..|.+++|++.+.+.|... +|..||.+|.++||.+++|+|+++-++||||||++|++|+++.+..... ......|+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~ 212 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGP 212 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCc
Confidence 35789999999999999987 9999999999999999999999999999999999999999999877542 23346799
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCCCCC
Q 007831 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~l~~ 299 (588)
.+|||+||||||.|+|+.+.++.++. ..|--+.+.||...+.....+++|++|+|+|||||.|+|.+ ..+.++.
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~-----hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPF-----HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCc-----eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 99999999999999999999998764 35667888999998888899999999999999999999987 5677899
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhh-------------hcceeEEEecccchHHHHHHHHhcCCCeEEEecCC---
Q 007831 300 CRYLTLDEADRLVDLGFEDDIREVFDHFK-------------AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA--- 363 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~-------------~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~--- 363 (588)
+++||+||||+++++||+.++..|++.+. .+.|.+++|||++..+..++...+.+|+.+..+..
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 99999999999999999999999998772 24688999999999999999999999998872211
Q ss_pred ----------------------CCcccceEEEeeehhhHHHHHHHHHHhhc-----CCCCEEEEeCccccHHHHHHHHHH
Q 007831 364 ----------------------GAANLDVIQEVEYVKQEAKIVYLLECLQK-----TPPPVLIFCENKADVDDIHEYLLL 416 (588)
Q Consensus 364 ----------------------~~~~~~~~~~~~~~~~~~k~~~ll~~l~~-----~~~~viIF~~s~~~~~~l~~~L~~ 416 (588)
......+.|++..++...++..|...|.+ ...++|||+.+...++.-+..|..
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 11223355666777777777777776654 245899999999999988888754
Q ss_pred c----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC
Q 007831 417 K----------------------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 474 (588)
Q Consensus 417 ~----------------------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s 474 (588)
. +..+..+||+|+|++|..+++.|...+-.||+|||+++||+|+|+|++||.||.|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 2 345788999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHH
Q 007831 475 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 475 ~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
+++|+||+|||+|+|.+|.++.|+.+. +..++..|+.
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~-Eaey~~~l~~ 564 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPS-EAEYVNYLKK 564 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEeccc-HHHHHHHHHh
Confidence 999999999999999999999999998 4446655544
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7e-59 Score=501.60 Aligned_cols=367 Identities=34% Similarity=0.531 Sum_probs=320.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007831 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
....|.++++++.+.++|.+.||..||++|.++|+.+++|+|+|+++|||||||++|++|++..+........ .....+
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~~ 163 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGEP 163 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCCc
Confidence 3457899999999999999999999999999999999999999999999999999999999998875321100 011257
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCCCC
Q 007831 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~l~~ 299 (588)
++|||+||++||.|+++.+..+...+ ++++..++||.+...+...+. ..++|+|+||++|.+++.++...+++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~------~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~ 237 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT------GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDM 237 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC------CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCccccc
Confidence 99999999999999999999997655 788999999988877777664 46899999999999999888888999
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhh--cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeeh
Q 007831 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 377 (588)
+++|||||||++.+++|...++.++..++. .+|++++|||++..+.+++..++.+|..+.+.........+.+.+..+
T Consensus 238 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 317 (475)
T PRK01297 238 VEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAV 317 (475)
T ss_pred CceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEe
Confidence 999999999999999999999999998854 579999999999999999999999998887766655555666666666
Q ss_pred hhHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007831 378 KQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 456 (588)
....+...+...+... ..++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++
T Consensus 318 ~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~ 397 (475)
T PRK01297 318 AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGR 397 (475)
T ss_pred cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Confidence 6666665566655543 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH
Q 007831 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
|||+|++++||+|++|.|+.+|+||+||+||.|+.|.+++|+.++ +...+..+..++.
T Consensus 398 GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~~~~~~~~~~~~ 455 (475)
T PRK01297 398 GIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED-DAFQLPEIEELLG 455 (475)
T ss_pred CCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH-HHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999876 4555566655553
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-60 Score=463.40 Aligned_cols=368 Identities=29% Similarity=0.479 Sum_probs=326.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|++++|.+++++++.+.||.+||.+|..+||.++.|+|+++-|.||||||.+|++|+++.++...... ....|+.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 5899999999999999999999999999999999999999999999999999999999999998865433 34578999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc-CCCCCcc
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~-~~l~~~~ 301 (588)
+|++||+|||+|++..+.++...+. ..++++-+..+.+.......+...++|||+||+++..++..+. ..+..++
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~----k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~ 172 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCS----KDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLS 172 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHH----HhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhhee
Confidence 9999999999999999999876652 2567776776666666667888889999999999999998876 6788999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCccc-ceEEEeeehhhH
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL-DVIQEVEYVKQE 380 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~-~~~~~~~~~~~~ 380 (588)
++|+||||.++..||++++..+.+++|+..|.++||||+...++.+-+.++.+|+.+........+. .+.|....+..+
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~ 252 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE 252 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999988877765544 455566666777
Q ss_pred HHHHHHHHHhh--cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----
Q 007831 381 AKIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV----- 453 (588)
Q Consensus 381 ~k~~~ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~----- 453 (588)
+|+..+...++ -..+++|||+|++..|..+.-.|...|+...+++|.++..-|..++++|+.|-++++||||.
T Consensus 253 DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~ 332 (569)
T KOG0346|consen 253 DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGD 332 (569)
T ss_pred hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchh
Confidence 77766655543 35789999999999999999999999999999999999999999999999999999999992
Q ss_pred ------------------------------cccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCC
Q 007831 454 ------------------------------ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 454 ------------------------------~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~ 503 (588)
.+||||+.+|.+|||||+|.++..|+||+|||+|+|++|.+++|+.+. +
T Consensus 333 ~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~-e 411 (569)
T KOG0346|consen 333 KLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK-E 411 (569)
T ss_pred hhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch-H
Confidence 579999999999999999999999999999999999999999999998 4
Q ss_pred hhHHHHHHHHHHHh
Q 007831 504 ETTLLDLKHLLQEA 517 (588)
Q Consensus 504 ~~~~~~l~~~l~~~ 517 (588)
+.....+..++...
T Consensus 412 ~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 412 EFGKESLESILKDE 425 (569)
T ss_pred HhhhhHHHHHHhhH
Confidence 44445666666543
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6e-57 Score=478.50 Aligned_cols=358 Identities=32% Similarity=0.584 Sum_probs=311.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|++++||||||||++|++|++..+... ..+++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--------LNACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--------CCCce
Confidence 4689999999999999999999999999999999999999999999999999999999999876321 24678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
+|||+||++||.|+.+.+..++... .+.+..+.|+.....+...+..+++|+|+||++|.+++.+....+++++
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~ 172 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL------KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLK 172 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc------CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCccccccc
Confidence 9999999999999999999987644 6788888999888888888888899999999999999988888899999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh-H
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ-E 380 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~ 380 (588)
+|||||||++.+++|...+..++..++...|++++|||+|+.+..+...++..|..+.+.........+.+.+..... .
T Consensus 173 lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PTZ00424 173 LFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE 252 (401)
T ss_pred EEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH
Confidence 999999999999999999999999999999999999999999999999998888776655443333444444444433 3
Q ss_pred HHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007831 381 AKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 381 ~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlD 459 (588)
.+...+...+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|
T Consensus 253 ~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiD 332 (401)
T PTZ00424 253 WKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGID 332 (401)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcC
Confidence 344444444433 3468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007831 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 460 ip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
+|++++||+||+|.+...|+||+||+||.|+.|.|++|++++ +...+..+.+.+
T Consensus 333 ip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~e~~~ 386 (401)
T PTZ00424 333 VQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPD-DIEQLKEIERHY 386 (401)
T ss_pred cccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876 444444444333
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-59 Score=470.56 Aligned_cols=370 Identities=32% Similarity=0.508 Sum_probs=301.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCC---C
Q 007831 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPI---V 215 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~---~ 215 (588)
..+..|.++.+|..++++|...||..||+||...||.+..| .|+++.|.||||||++|-+|++..+.+....... .
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34667999999999999999999999999999999999999 7999999999999999999999955442111000 1
Q ss_pred CCCC--CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc
Q 007831 216 PGEG--PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 216 ~~~~--~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~ 293 (588)
...+ +.+||++||||||.|+...+...+. ++++++..++||.....|.+.+...++|||||||||+.++...
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~------~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAE------KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhcc------ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh
Confidence 1223 4599999999999999999999976 4599999999999999999999999999999999999999876
Q ss_pred cC---CCCCcceeEecCcccccccCcHHHHHHHHHhhh-----hcceeEEEecccchH---------------------H
Q 007831 294 KM---NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-----AQRQTLLFSATMPTK---------------------I 344 (588)
Q Consensus 294 ~~---~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~-----~~~q~l~~SAT~~~~---------------------i 344 (588)
.. ++..++++|+||+|||...|+-..+..++..+. .++|++.||||++-. +
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ki 411 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKI 411 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHH
Confidence 44 577889999999999999998899999998875 468999999998422 3
Q ss_pred HHHHHHh--cCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEE
Q 007831 345 QNFARSA--LVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV 422 (588)
Q Consensus 345 ~~~~~~~--l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~ 422 (588)
+.+++.. ..+|.++...+.......+......+....+-.+|.-++...++++|||||++..+.+|+-+|...+++..
T Consensus 412 q~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 412 QHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 3333322 23444444433322221111111111222222233333455689999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 423 AVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 423 ~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
.+|+.|.|..|-..++.|++....||||||+++||||||+|+|||||..|.+.+.|+||.|||+|++..|+.+.|+.+.
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~- 570 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ- 570 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHH
Q 007831 503 SETTLLDLKHLLQE 516 (588)
Q Consensus 503 ~~~~~~~l~~~l~~ 516 (588)
+...+..|.+-|..
T Consensus 571 e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 571 EVGPLKKLCKTLKK 584 (731)
T ss_pred HhHHHHHHHHHHhh
Confidence 45556666665543
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-56 Score=437.29 Aligned_cols=368 Identities=32% Similarity=0.590 Sum_probs=334.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|++|+|++.+++.++..||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++.+-. +.....+
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--------~~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--------SVKETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--------chHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999987522 1245678
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-KRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
|+++|||+||.|+.+....++..+ +.++..+.||.+...+...+ ..+++|+|+||+++.+++....+..+.++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~------~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iK 171 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHM------DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIK 171 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhccc------ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccccccee
Confidence 999999999999999999987765 88999999998887555444 45689999999999999999888888999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHH
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 381 (588)
++|+||||.|+..||.+++..++.+++...|++++|||+|..+....+.++.+|+.+.+...+.....+.|.+..+..+.
T Consensus 172 mfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~ 251 (397)
T KOG0327|consen 172 MFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE 251 (397)
T ss_pred EEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988877778888888888888
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC
Q 007831 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip 461 (588)
|+..|..+.. .-.+.+|||+++..++.+...|...++.+.++||.|.+.+|..+++.|++|..+|||.|+.++||+|+.
T Consensus 252 k~~~l~dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 252 KLDTLCDLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred cccHHHHHHH-hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 8888888777 666899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHh
Q 007831 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~ 526 (588)
.+..||||++|...++|+||+||+||.|.+|.++.|++.. +.+.+.++.+++......+|....
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~-d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEE-DVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHh-hHHHHHhHHHhcCCcceecccchh
Confidence 9999999999999999999999999999999999999988 666677777666555555555443
No 31
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-56 Score=455.26 Aligned_cols=401 Identities=31% Similarity=0.498 Sum_probs=348.5
Q ss_pred HHHHHHhcCeEeecCCCCCCCCCCCC----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007831 122 CDLIRKQWHIIVDGEDIPPPIKNFKD----MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 122 ~~~~r~~~~i~v~g~~~p~p~~~f~~----~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
....|+.+.+.|.|.++|+|+.+|.+ ....+.++..+...+|..|+|+|++++|.++.++|++.|||||||||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 34568888999999999999999997 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH-HHHHHhcCC
Q 007831 198 VLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS-QLEVVKRGV 276 (588)
Q Consensus 198 ~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~-~~~~l~~~~ 276 (588)
.+|++.++..... .....|-+++|+.|||+||.|++.++.++...- ...+++........... ........+
T Consensus 191 ~~Pil~~L~~~~~---~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~----~t~~~a~~~~~~~~~~qk~a~~~~~k~ 263 (593)
T KOG0344|consen 191 NLPILQHLKDLSQ---EKHKVGLRALILSPTRELAAQIYREMRKYSIDE----GTSLRAAQFSKPAYPSQKPAFLSDEKY 263 (593)
T ss_pred hhHHHHHHHHhhc---ccCccceEEEEecchHHHHHHHHHHHHhcCCCC----CCchhhhhcccccchhhccchhHHHHH
Confidence 9999998876431 122457799999999999999999999997210 01344444333322211 112223347
Q ss_pred cEEEeChHHHHHHHHccc--CCCCCcceeEecCccccccc-CcHHHHHHHHHhhhh-cceeEEEecccchHHHHHHHHhc
Q 007831 277 HIVVATPGRLKDMLAKKK--MNLDNCRYLTLDEADRLVDL-GFEDDIREVFDHFKA-QRQTLLFSATMPTKIQNFARSAL 352 (588)
Q Consensus 277 ~IvV~Tp~~L~~~l~~~~--~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~~~~~~~l 352 (588)
+|+|.||-++...+.... +.++.+.++|+||||++.+. +|..++..|++.+.. ...+-+||||++..+++++...+
T Consensus 264 dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~ 343 (593)
T KOG0344|consen 264 DILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIK 343 (593)
T ss_pred HHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhh
Confidence 999999999999888765 67899999999999999998 899999999988753 45667899999999999999999
Q ss_pred CCCeEEEecCCCCcccceEEEeeehh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHH-HHcCCcEEEEeCCCC
Q 007831 353 VKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYL-LLKGVEAVAVHGGKD 429 (588)
Q Consensus 353 ~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L-~~~g~~~~~ihg~~~ 429 (588)
.+++.+.++..+.++..+.|...++. ...++..+.+.+.. ..+|+|||+.++..|..|...| ...++++.++||..+
T Consensus 344 ~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 344 SDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERS 423 (593)
T ss_pred ccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccc
Confidence 99999999999988888999888875 45677777777766 5789999999999999999999 788999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHH
Q 007831 430 QEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 509 (588)
Q Consensus 430 ~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~ 509 (588)
+.+|.+++++|+.|+++|||||++++||+|+.++++|||||+|.+...|+||+||+||+|+.|.|++|+++. +-..+..
T Consensus 424 ~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~-d~~~ir~ 502 (593)
T KOG0344|consen 424 QKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQ-DMPRIRS 502 (593)
T ss_pred hhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccc-cchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 7778899
Q ss_pred HHHHHHHhcccCchHHhhccC
Q 007831 510 LKHLLQEAKQRIPPVLAELND 530 (588)
Q Consensus 510 l~~~l~~~~~~~p~~l~~l~~ 530 (588)
+...++..+..+|.++..+..
T Consensus 503 iae~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 503 IAEVMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred HHHHHHHcCCcchHHHHhhhh
Confidence 999999999999999887764
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-56 Score=427.55 Aligned_cols=370 Identities=32% Similarity=0.506 Sum_probs=321.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCC
Q 007831 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGE 218 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 218 (588)
...+|+++.|.|+++++++.++|.+|+.+|..++|.++.. +|+|.++..|+|||.||.|.+|..+--. ..
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~ 159 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VV 159 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------cc
Confidence 4679999999999999999999999999999999999965 8999999999999999999999775322 35
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCCC
Q 007831 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~l 297 (588)
.|.++.|+|||+||.|+.+.+.+.++.. ++...+.+.|.....- ..+ ..+|+|+||+.+.|++.+ +.+.+
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~------~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~ 230 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFT------ELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDL 230 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCce------eeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhCh
Confidence 7889999999999999999999997654 6777777766411110 011 158999999999999988 88889
Q ss_pred CCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeee
Q 007831 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY 376 (588)
Q Consensus 298 ~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~ 376 (588)
..++.+|+||||.|++ .||.++-..|...++...|+++||||+...+..|+...+.++..+.+.+......++.|.+..
T Consensus 231 ~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~ 310 (477)
T KOG0332|consen 231 EKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVL 310 (477)
T ss_pred hhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheee
Confidence 9999999999999997 579999999999999999999999999999999999999999999988888888888887766
Q ss_pred hh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc
Q 007831 377 VK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA 454 (588)
Q Consensus 377 ~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~ 454 (588)
+. ..+|+..+.+.... .-++.||||.++..+..++..|...|+.+.++||.|.-.+|..++++|+.|+.+|||+|+++
T Consensus 311 C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 311 CACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred ccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 65 55677777774433 35689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceEEecCCCC------ChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH-HhcccCchHHhh
Q 007831 455 SKGLDFPDIQHVINYDMPA------EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ-EAKQRIPPVLAE 527 (588)
Q Consensus 455 ~~GlDip~v~~VI~~~~p~------s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~p~~l~~ 527 (588)
+||||++.|++|||||+|. +++.|+||||||||.|++|.++.|+....+...+..+.+... ......|+.+.+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 9999999999999999994 799999999999999999999999999878777777776663 334444544444
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-56 Score=436.82 Aligned_cols=360 Identities=36% Similarity=0.583 Sum_probs=336.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
-.+|..|+|...+.+++.+.||..|||+|+..||.+|.++|++..+.||||||.||++|+++.+.... ..|.+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~R 92 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLR 92 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccc
Confidence 45899999999999999999999999999999999999999999999999999999999999886542 35789
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
++++.|||+||.|+.+.++.+.... ++++++++||..+.+++..+..++|||+|||+++..+...-.+.|+.+.
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt------~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT------KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc------chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheecccccee
Confidence 9999999999999999999998765 8999999999999999999998899999999999888777678899999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHH
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 381 (588)
||||||||++..|||.+++..++..++..+|+++||||+|..+.++++.-+..|+.+.+......+......+.++....
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999887777667777777788888999
Q ss_pred HHHHHHHHhhcCCC--CEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007831 382 KIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 382 k~~~ll~~l~~~~~--~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlD 459 (588)
|..+|+..+.+..+ +++|||.++.+++.+...|...|+.+..++|.+++..|...+..|+.++..+||.|++++||+|
T Consensus 247 K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 247 KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 99999999988655 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH
Q 007831 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 460 ip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
+|-.+.|||||+|.+..-|+||+||+.|+|.+|.++.|+... +..++.+|..++.
T Consensus 327 iplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~-~~~yl~DL~lflg 381 (529)
T KOG0337|consen 327 IPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVAST-DDPYLLDLQLFLG 381 (529)
T ss_pred CccccccccccCCCCCceEEEEecchhhccccceEEEEEecc-cchhhhhhhhhcC
Confidence 999999999999999999999999999999999999999988 5667777776653
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.2e-53 Score=472.17 Aligned_cols=343 Identities=18% Similarity=0.240 Sum_probs=273.8
Q ss_pred CCCCCCCCCCC--CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007831 138 IPPPIKNFKDM--RFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 138 ~p~p~~~f~~~--~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
+|+--..+..+ .+++.+.++|.++||.+||++|.++|+.+++|+|+++++|||||||++|++|++..+...
T Consensus 7 ~p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------- 79 (742)
T TIGR03817 7 LPARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------- 79 (742)
T ss_pred cCCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------
Confidence 34444444444 489999999999999999999999999999999999999999999999999999987652
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc--
Q 007831 216 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-- 293 (588)
Q Consensus 216 ~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-- 293 (588)
.++++|||+|||+||.|+.+.++++. ..++++..+.|+++.. +...+..+++|+|+||++|...+...
T Consensus 80 --~~~~aL~l~PtraLa~q~~~~l~~l~-------~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~ 149 (742)
T TIGR03817 80 --PRATALYLAPTKALAADQLRAVRELT-------LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHA 149 (742)
T ss_pred --CCcEEEEEcChHHHHHHHHHHHHHhc-------cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchh
Confidence 46799999999999999999999985 1268888888887754 44566777999999999997543321
Q ss_pred --cCCCCCcceeEecCcccccccCcHHHHHHHHHhh-------hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCC
Q 007831 294 --KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG 364 (588)
Q Consensus 294 --~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-------~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~ 364 (588)
...++++++|||||||.|.+. |+..+..++..+ +..+|++++|||+++... ++..++..|+.+ +...+
T Consensus 150 ~~~~~l~~l~~vViDEah~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~ 226 (742)
T TIGR03817 150 RWARFLRRLRYVVIDECHSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG 226 (742)
T ss_pred HHHHHHhcCCEEEEeChhhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC
Confidence 233789999999999999874 777766665544 456899999999998864 677777777654 32222
Q ss_pred CcccceEEEeeeh----------------hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--------CCc
Q 007831 365 AANLDVIQEVEYV----------------KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--------GVE 420 (588)
Q Consensus 365 ~~~~~~~~~~~~~----------------~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--------g~~ 420 (588)
.........+... ....+. .++..+...+.++||||+|+..++.++..|... +..
T Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~-~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~ 305 (742)
T TIGR03817 227 SPRGARTVALWEPPLTELTGENGAPVRRSASAEAA-DLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAER 305 (742)
T ss_pred CCcCceEEEEecCCccccccccccccccchHHHHH-HHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 2211111111000 011222 233333335679999999999999999998764 567
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecC
Q 007831 421 AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 421 ~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~ 500 (588)
+..+||++++++|..+++.|++|++++||||+++++|||+|++++||+|++|.++.+|+||+|||||.|+.|.+++++..
T Consensus 306 v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 306 VAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred hhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 007831 501 N 501 (588)
Q Consensus 501 ~ 501 (588)
+
T Consensus 386 ~ 386 (742)
T TIGR03817 386 D 386 (742)
T ss_pred C
Confidence 4
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.4e-54 Score=438.48 Aligned_cols=353 Identities=29% Similarity=0.463 Sum_probs=319.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007831 137 DIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 137 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
..|.....|+++-|..+++..|+..+|..||++|..|||.++.+-|+|++|..|+|||++|.+.++..+...
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-------- 90 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-------- 90 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--------
Confidence 356677899999999999999999999999999999999999999999999999999999999888765332
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCC
Q 007831 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~ 296 (588)
...+..+||+|||++|.|+.+.+.+++..+ .++++.+++||++.......++. ++|+|+||||+..++..+.++
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf-----~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n 164 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSF-----TGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMN 164 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccc-----cCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCC
Confidence 357889999999999999999999998765 48999999999998887777765 799999999999999999999
Q ss_pred CCCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEee
Q 007831 297 LDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 297 l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 375 (588)
.+.++++|+||||.+.+ ..|.+++..|+..+|..+|++.||||.|..+.+.+.+++.+|..+...........+.|.+.
T Consensus 165 ~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~ 244 (980)
T KOG4284|consen 165 MSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVV 244 (980)
T ss_pred ccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheee
Confidence 99999999999999998 56999999999999999999999999999999999999999999988877777778888776
Q ss_pred ehhh--------HHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007831 376 YVKQ--------EAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 376 ~~~~--------~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~ 446 (588)
...+ ..++..|-+.+... -.+.||||+....|+-++.+|...|+.|.++.|.|+|.+|..+++.++.-..+
T Consensus 245 ~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~r 324 (980)
T KOG4284|consen 245 AKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVR 324 (980)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEE
Confidence 5542 23444454544443 34899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCC
Q 007831 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 447 vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~ 503 (588)
|||+||..+||||-++|++|||.|.|.+.+.|.||||||||.|..|.+++|+....+
T Consensus 325 ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 325 ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999988744
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.9e-51 Score=454.57 Aligned_cols=331 Identities=20% Similarity=0.295 Sum_probs=262.2
Q ss_pred CCCC--CCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007831 144 NFKD--MRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 144 ~f~~--~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+|.. +++...+...++.. |+..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~G 501 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PG 501 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CC
Confidence 4553 45567777777776 9999999999999999999999999999999999999999852 45
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh------cCCcEEEeChHHHHH--HHHc
Q 007831 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK------RGVHIVVATPGRLKD--MLAK 292 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~------~~~~IvV~Tp~~L~~--~l~~ 292 (588)
.+|||+|+++|+.++...+... ++++..+.++....++...+. ..++|+|+||++|.. .+..
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~----------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~ 571 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA----------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLR 571 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC----------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHH
Confidence 7999999999998766655553 788999999988777665543 358999999999852 2222
Q ss_pred c--c-CCCCCcceeEecCcccccccC--cHHHHHHH--HHhhhhcceeEEEecccchHHHHHHHHhcCCC-eEEEecCCC
Q 007831 293 K--K-MNLDNCRYLTLDEADRLVDLG--FEDDIREV--FDHFKAQRQTLLFSATMPTKIQNFARSALVKP-VTVNVGRAG 364 (588)
Q Consensus 293 ~--~-~~l~~~~~lViDEah~l~~~~--~~~~i~~i--~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p-~~i~~~~~~ 364 (588)
. . .....+.+|||||||++.+|| |+..++.+ +...-+..++++||||++..+...+...+... ..+....
T Consensus 572 ~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-- 649 (1195)
T PLN03137 572 HLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-- 649 (1195)
T ss_pred HHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--
Confidence 1 1 123458899999999999998 66766653 33333567899999999999887666655422 2222222
Q ss_pred CcccceEEEeeehhhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007831 365 AANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442 (588)
Q Consensus 365 ~~~~~~~~~~~~~~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~ 442 (588)
....++...+... ....+..+...+.. ...+.||||.++..|+.+++.|...|+.+..|||+|++.+|..+++.|..
T Consensus 650 f~RpNL~y~Vv~k-~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~ 728 (1195)
T PLN03137 650 FNRPNLWYSVVPK-TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK 728 (1195)
T ss_pred cCccceEEEEecc-chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc
Confidence 2233443333322 12223345555543 24579999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 443 g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|+++|||||+++++|||+|+|++||||++|.+++.|+||+|||||+|..|.|++|+...
T Consensus 729 Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 729 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred CCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999765
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.4e-50 Score=432.43 Aligned_cols=311 Identities=22% Similarity=0.348 Sum_probs=248.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
||..|+|+|.++|+.+++|+|+++++|||||||++|++|++. .++.+|||+||++|+.|+.+.+..
T Consensus 8 g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--------------~~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 8 GLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--------------SDGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--------------cCCcEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999984 245789999999999999988876
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHH---HHh-cCCcEEEeChHHHHHHH-HcccC-CCCCcceeEecCcccccccC
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VVK-RGVHIVVATPGRLKDML-AKKKM-NLDNCRYLTLDEADRLVDLG 315 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~-~~~~IvV~Tp~~L~~~l-~~~~~-~l~~~~~lViDEah~l~~~~ 315 (588)
+ ++.+..+.++....++.. .+. ..++|+++||+++.... ....+ ....+++|||||||++.+||
T Consensus 74 ~----------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g 143 (470)
T TIGR00614 74 S----------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWG 143 (470)
T ss_pred c----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccc
Confidence 5 677788887766554332 222 34899999999975322 11112 46789999999999999988
Q ss_pred --cHHHHHHH---HHhhhhcceeEEEecccchHHHHHHHHhc--CCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHH
Q 007831 316 --FEDDIREV---FDHFKAQRQTLLFSATMPTKIQNFARSAL--VKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLE 388 (588)
Q Consensus 316 --~~~~i~~i---~~~~~~~~q~l~~SAT~~~~i~~~~~~~l--~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~ 388 (588)
|...+..+ ...+ +..+++++|||+++.+...+...+ .+|..+... . ...++...+.... ...+..++.
T Consensus 144 ~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~--~r~nl~~~v~~~~-~~~~~~l~~ 218 (470)
T TIGR00614 144 HDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-F--DRPNLYYEVRRKT-PKILEDLLR 218 (470)
T ss_pred cccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-C--CCCCcEEEEEeCC-ccHHHHHHH
Confidence 55555443 2233 467899999999998876655554 344433322 1 1223333322221 123445556
Q ss_pred Hhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceE
Q 007831 389 CLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 389 ~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~V 466 (588)
.+.+ .+..+||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 219 ~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~V 298 (470)
T TIGR00614 219 FIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFV 298 (470)
T ss_pred HHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEE
Confidence 5542 34567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 467 INYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 467 I~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|+|++|.|++.|+||+|||||.|..|.+++|++..
T Consensus 299 I~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~ 333 (470)
T TIGR00614 299 IHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA 333 (470)
T ss_pred EEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh
Confidence 99999999999999999999999999999999877
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-51 Score=406.16 Aligned_cols=348 Identities=28% Similarity=0.420 Sum_probs=272.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHh---------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 152 EPILKKLKAKGIVQPTPIQVQGLPVVL---------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~i~~il---------~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
..+...+.++++....|+|...+|.++ .++|+.+.||||||||++|.+|+++.+.+.. -+.-++
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRa 218 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRA 218 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEE
Confidence 344455899999999999999999996 2689999999999999999999999876532 244689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc-----CCcEEEeChHHHHHHHHc-ccCC
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR-----GVHIVVATPGRLKDMLAK-KKMN 296 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-----~~~IvV~Tp~~L~~~l~~-~~~~ 296 (588)
|||+||++|+.|+++.|.+++... ++.|+.+.|..+.......+.. .+||+|+|||||.|++.+ +.++
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~t------gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGT------GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCC------ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 999999999999999999998765 8889999998888877777654 248999999999999984 7899
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhh----------------------------------cceeEEEecccch
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----------------------------------QRQTLLFSATMPT 342 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~----------------------------------~~q~l~~SAT~~~ 342 (588)
|+.++|+||||||||++..|.+-+-.++.+++. ..+.++||||+..
T Consensus 293 Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsq 372 (620)
T KOG0350|consen 293 LKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQ 372 (620)
T ss_pred hhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhc
Confidence 999999999999999987665433333333211 1235788898866
Q ss_pred HHHHHHHHhcCCCeEEEecCCC----CcccceEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHH--
Q 007831 343 KIQNFARSALVKPVTVNVGRAG----AANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLL-- 415 (588)
Q Consensus 343 ~i~~~~~~~l~~p~~i~~~~~~----~~~~~~~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~-- 415 (588)
.-..+..--+..|-...+.... .....+..........-+...+...+.. ...++|+|+++...+.+++..|.
T Consensus 373 dP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~ 452 (620)
T KOG0350|consen 373 DPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVE 452 (620)
T ss_pred ChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHH
Confidence 6556666667777443332111 1111111122222222344445555544 35689999999999999999887
Q ss_pred --HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccE
Q 007831 416 --LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 493 (588)
Q Consensus 416 --~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~ 493 (588)
...+++..+.|+++...|...++.|+.|.+.||||||+++||+|+.+++.|||||+|.+...|+||+|||+|+|+.|.
T Consensus 453 ~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~ 532 (620)
T KOG0350|consen 453 FCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY 532 (620)
T ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce
Confidence 235677779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhHHHHHHH
Q 007831 494 ATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 494 ~~~~~~~~~~~~~~~~l~~ 512 (588)
|++++.......+...|+.
T Consensus 533 a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 533 AITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred EEEeeccccchHHHHHHHH
Confidence 9999998844434333333
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.7e-48 Score=425.20 Aligned_cols=322 Identities=23% Similarity=0.352 Sum_probs=253.4
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007831 150 FPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
++....+.|++. ||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+|||+|+
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl 74 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPL 74 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecH
Confidence 344444556554 9999999999999999999999999999999999999999842 3468999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcccCCCCCcceeE
Q 007831 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lV 304 (588)
++|+.|+.+.+..+ ++.+.++.++......... +. ...+++++||++|........+...++++||
T Consensus 75 ~sL~~dqv~~l~~~----------gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iV 144 (607)
T PRK11057 75 ISLMKDQVDQLLAN----------GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLA 144 (607)
T ss_pred HHHHHHHHHHHHHc----------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEE
Confidence 99999999888775 6777777777665544332 22 3478999999998643222334456789999
Q ss_pred ecCcccccccC--cHHHHHHH---HHhhhhcceeEEEecccchHHHHHHHHhc--CCCeEEEecCCCCcccceEEEeeeh
Q 007831 305 LDEADRLVDLG--FEDDIREV---FDHFKAQRQTLLFSATMPTKIQNFARSAL--VKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 305 iDEah~l~~~~--~~~~i~~i---~~~~~~~~q~l~~SAT~~~~i~~~~~~~l--~~p~~i~~~~~~~~~~~~~~~~~~~ 377 (588)
|||||++.+|| |...++.+ ...+ +..+++++|||+++.+...+...+ .+|.... .... ..++...+ .
T Consensus 145 IDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~--r~nl~~~v--~ 218 (607)
T PRK11057 145 VDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD--RPNIRYTL--V 218 (607)
T ss_pred EeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCC--CCcceeee--e
Confidence 99999999987 55555443 2333 467899999999988766544443 3444332 2221 22222221 1
Q ss_pred hhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007831 378 KQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 456 (588)
.....+..++..+.. .+.++||||+++..|+.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~ 298 (607)
T PRK11057 219 EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGM 298 (607)
T ss_pred eccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhc
Confidence 222234445555543 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 457 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|||+|+|++||+|++|.|++.|+||+|||||.|..|.+++|++..
T Consensus 299 GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~ 343 (607)
T PRK11057 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred cCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHH
Confidence 999999999999999999999999999999999999999999876
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.7e-48 Score=426.44 Aligned_cols=316 Identities=23% Similarity=0.366 Sum_probs=255.3
Q ss_pred HHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007831 156 KKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 156 ~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
+.|++. ||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKD 68 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHH
Confidence 345554 9999999999999999999999999999999999999999842 3468999999999999
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccc
Q 007831 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV----KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~ 310 (588)
+.+.+..+ ++.+..+.++.+..+....+ ....+|+++||++|........+...++++|||||||+
T Consensus 69 q~~~l~~~----------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~ 138 (591)
T TIGR01389 69 QVDQLRAA----------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHC 138 (591)
T ss_pred HHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcc
Confidence 99988876 67788888887766544322 24689999999999654444455567899999999999
Q ss_pred ccccC--cHHHHHHHH---HhhhhcceeEEEecccchHHHHHHHHhcC--CCeEEEecCCCCcccceEEEeeehhhHHHH
Q 007831 311 LVDLG--FEDDIREVF---DHFKAQRQTLLFSATMPTKIQNFARSALV--KPVTVNVGRAGAANLDVIQEVEYVKQEAKI 383 (588)
Q Consensus 311 l~~~~--~~~~i~~i~---~~~~~~~q~l~~SAT~~~~i~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~ 383 (588)
+.+|| |...+..+. ..++ ..+++++|||+++.+...+...+. .+..+. .. ....++...+. ....+.
T Consensus 139 i~~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~nl~~~v~--~~~~~~ 212 (591)
T TIGR01389 139 VSQWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TS--FDRPNLRFSVV--KKNNKQ 212 (591)
T ss_pred cccccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CCCCCcEEEEE--eCCCHH
Confidence 99987 665555443 3333 345999999999998876666654 333222 11 12223333222 223344
Q ss_pred HHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC
Q 007831 384 VYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 384 ~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~ 462 (588)
..+...+... +.++||||+++..++.+++.|...|+.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|+
T Consensus 213 ~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~ 292 (591)
T TIGR01389 213 KFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPN 292 (591)
T ss_pred HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCC
Confidence 4556655543 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 463 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 463 v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+++||+|++|.|++.|+|++|||||.|..|.+++|++..
T Consensus 293 v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 293 VRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred CCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHH
Confidence 999999999999999999999999999999999998766
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.1e-47 Score=430.97 Aligned_cols=348 Identities=21% Similarity=0.272 Sum_probs=259.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007831 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
+++.+.+.+.+ +|..|||+|.++||.+++|+|++++||||||||++|++|++..+....... ...+++++|||+||+
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcCHH
Confidence 66777777665 789999999999999999999999999999999999999999887532110 112467899999999
Q ss_pred HHHHHHHHHHHHHhhccc------ccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC--CCCCcc
Q 007831 230 ELARQTYEVVEQFLTPMR------DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM--NLDNCR 301 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~------~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~--~l~~~~ 301 (588)
+|+.|+++.+...+..+. ....+++++...+|+++...+...+.+.++|+||||++|..++....+ .+.+++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 999999988775443221 112347899999999988888778888899999999999877765433 478999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhh----hhcceeEEEecccchH--HHHHHHHhc----CCCeEEEecCCCCcccceE
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTK--IQNFARSAL----VKPVTVNVGRAGAANLDVI 371 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~----~~~~q~l~~SAT~~~~--i~~~~~~~l----~~p~~i~~~~~~~~~~~~~ 371 (588)
+|||||+|.+.+..++..+...+..+ +...|++++|||+++. +..++.... ..++.+.... ......+.
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~ 253 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIK 253 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccC-CCccceEE
Confidence 99999999999877766665554443 3567999999999763 222222111 1122221111 11111110
Q ss_pred EE-----eeehhh---HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHH
Q 007831 372 QE-----VEYVKQ---EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK------GVEAVAVHGGKDQEEREYAI 437 (588)
Q Consensus 372 ~~-----~~~~~~---~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~R~~~~ 437 (588)
.. ...... ...+...+..+.+..+++||||+|+..|+.++..|... +..+..+||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00 000111 11222222222234678999999999999999999863 46799999999999999999
Q ss_pred HHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccC-CCccEEEEEecCC
Q 007831 438 SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC-GKTGIATTFINKN 501 (588)
Q Consensus 438 ~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~-g~~g~~~~~~~~~ 501 (588)
+.|++|+++|||||+++++|||+|++++||+|+.|.++..|+||+||+||. |..+.++++....
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 999999999999999999999999999999999999999999999999987 5555666665543
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.2e-47 Score=430.07 Aligned_cols=334 Identities=24% Similarity=0.384 Sum_probs=260.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.|++++||+.+++.+.+.||.+|+|+|.++++. +++|+|++++||||||||++|.+|++..+. ++.++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----------~~~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----------RGGKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----------cCCcE
Confidence 578999999999999999999999999999998 679999999999999999999999998763 35689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
|||+|+++||.|+++.+.++.. + ++++..++|+...... ....++|+||||+++..++.+....++++++
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~------g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~l 140 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-L------GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITC 140 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-C------CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCE
Confidence 9999999999999999997642 2 6889999998765432 2245799999999998888766566889999
Q ss_pred eEecCcccccccCcHHHHHHHHHhh---hhcceeEEEecccchHHHHHHHHhcC--------CCeEEEec--CCCCcccc
Q 007831 303 LTLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALV--------KPVTVNVG--RAGAANLD 369 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~--------~p~~i~~~--~~~~~~~~ 369 (588)
||+||+|.+.+.+++..++.++..+ ....|++++|||+++. .++. .++. .|+.+..+ ........
T Consensus 141 vViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~ 218 (737)
T PRK02362 141 VVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFD 218 (737)
T ss_pred EEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeeccc
Confidence 9999999999988888888877665 4678999999999763 2232 2221 12211110 00000000
Q ss_pred eEEE-eeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC------------------------------
Q 007831 370 VIQE-VEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG------------------------------ 418 (588)
Q Consensus 370 ~~~~-~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g------------------------------ 418 (588)
..+. +...........+...+ ..++++||||+++..|+.++..|....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (737)
T PRK02362 219 DSQREVEVPSKDDTLNLVLDTL-EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKD 297 (737)
T ss_pred cccccCCCccchHHHHHHHHHH-HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHH
Confidence 0000 00001122222333333 356799999999999999998886431
Q ss_pred ------CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC-----CCCChhHHHHHhc
Q 007831 419 ------VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD-----MPAEIENYVHRIG 483 (588)
Q Consensus 419 ------~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~----~~-----~p~s~~~y~qriG 483 (588)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|
T Consensus 298 L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~G 377 (737)
T PRK02362 298 LADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAG 377 (737)
T ss_pred HHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999999997 66 6889999999999
Q ss_pred ccccCCCc--cEEEEEecCC
Q 007831 484 RTGRCGKT--GIATTFINKN 501 (588)
Q Consensus 484 RagR~g~~--g~~~~~~~~~ 501 (588)
||||.|.. |.+++++...
T Consensus 378 RAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 378 RAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred cCCCCCCCCCceEEEEecCc
Confidence 99999875 8999988664
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-46 Score=420.18 Aligned_cols=336 Identities=22% Similarity=0.298 Sum_probs=263.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
+|+++++++.+.+.|++.||.+|+|+|.++++. +++|+|++++||||||||++|.+|++..+.. .+.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----------~~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----------EGGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----------cCCeE
Confidence 577899999999999999999999999999986 7899999999999999999999999988754 35689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
|||+|+++||.|+++.+..+.. + ++++..++|+.+.... ....++|+|+||+++..++.+....++++++
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~~-~------g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~l 141 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWEK-L------GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKL 141 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHhh-c------CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCE
Confidence 9999999999999999987632 2 7889999998765432 2245899999999998887766667899999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccce-EEEeeehhh--
Q 007831 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDV-IQEVEYVKQ-- 379 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~-~~~~~~~~~-- 379 (588)
||+||+|.+.+.+++..+..++..+....|++++|||+++. .+++. ++.........+.......+ .+.+.+...
T Consensus 142 vViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~ 219 (720)
T PRK00254 142 VVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGK 219 (720)
T ss_pred EEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcc
Confidence 99999999999889999999999998899999999999863 44443 44332211111110000000 011111110
Q ss_pred ----HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc---------------------------------CCcEE
Q 007831 380 ----EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK---------------------------------GVEAV 422 (588)
Q Consensus 380 ----~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~---------------------------------g~~~~ 422 (588)
......++..+.+.+.++||||+|+..|+.++..|... ...+.
T Consensus 220 ~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 299 (720)
T PRK00254 220 IERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVA 299 (720)
T ss_pred hhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEE
Confidence 01112222222235679999999999999887766421 23588
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe-------cCCCC-ChhHHHHHhcccccCC--Ccc
Q 007831 423 AVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN-------YDMPA-EIENYVHRIGRTGRCG--KTG 492 (588)
Q Consensus 423 ~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~-------~~~p~-s~~~y~qriGRagR~g--~~g 492 (588)
.+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. ++.+|.||+|||||.| ..|
T Consensus 300 ~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G 379 (720)
T PRK00254 300 FHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVG 379 (720)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCc
Confidence 9999999999999999999999999999999999999999999994 56554 5779999999999975 679
Q ss_pred EEEEEecCC
Q 007831 493 IATTFINKN 501 (588)
Q Consensus 493 ~~~~~~~~~ 501 (588)
.+++++..+
T Consensus 380 ~~ii~~~~~ 388 (720)
T PRK00254 380 EAIIVATTE 388 (720)
T ss_pred eEEEEecCc
Confidence 999998765
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-45 Score=404.69 Aligned_cols=323 Identities=18% Similarity=0.227 Sum_probs=254.3
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHhcCC-CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE-EcCCHHHH
Q 007831 156 KKLKA-KGIVQPTPIQVQGLPVVLSGR-DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI-VCPSRELA 232 (588)
Q Consensus 156 ~~l~~-~g~~~p~~~Q~~~i~~il~g~-dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li-l~Ptr~La 232 (588)
+.+.+ .||. |||||.++|+.++.|+ ++++.+|||||||.+|.++++... . ....++.|| ++|||+||
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~--------~~~~~~rLv~~vPtReLa 75 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I--------GAKVPRRLVYVVNRRTVV 75 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c--------cccccceEEEeCchHHHH
Confidence 44444 3887 9999999999999998 577789999999997765554221 1 123455555 77999999
Q ss_pred HHHHHHHHHHhhccc-----------------ccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC
Q 007831 233 RQTYEVVEQFLTPMR-----------------DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 233 ~Q~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~ 295 (588)
.|+++.+.++.+.+. ..+...+++..++||.+...++..+..+++|||+|+ |++.++.+
T Consensus 76 ~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L 151 (844)
T TIGR02621 76 DQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLL 151 (844)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcc
Confidence 999999999987652 223456999999999999999999999999999996 66665554
Q ss_pred C----------------CCCcceeEecCcccccccCcHHHHHHHHHhh--hh---cceeEEEecccchHHHHHHHHhcCC
Q 007831 296 N----------------LDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KA---QRQTLLFSATMPTKIQNFARSALVK 354 (588)
Q Consensus 296 ~----------------l~~~~~lViDEah~l~~~~~~~~i~~i~~~~--~~---~~q~l~~SAT~~~~i~~~~~~~l~~ 354 (588)
+ ++++++||||||| ++++|...+..|++.+ +. .+|+++||||+|..+..+...++.+
T Consensus 152 ~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~ 229 (844)
T TIGR02621 152 FSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAE 229 (844)
T ss_pred ccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccC
Confidence 2 6889999999999 6899999999999975 33 2699999999999888888888877
Q ss_pred CeEEEecCCCCcccceEEEeeehhhHHHHHHHH----HHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCH
Q 007831 355 PVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL----ECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQ 430 (588)
Q Consensus 355 p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll----~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~ 430 (588)
+..+.+.........+.+.+ ....+.++..++ ..+...++++||||+|+..|+.+++.|...++ ..+||+|++
T Consensus 230 p~~i~V~~~~l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred CceeecccccccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 77666554433333444432 233333333333 23344567899999999999999999998887 899999999
Q ss_pred HHHH-----HHHHHHhc----CC-------cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCc-cE
Q 007831 431 EERE-----YAISSFKA----GK-------KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT-GI 493 (588)
Q Consensus 431 ~~R~-----~~~~~f~~----g~-------~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~-g~ 493 (588)
.+|. .+++.|++ |+ ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+. +.
T Consensus 307 ~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 9999 78999987 54 689999999999999986 899998877 79999999999999986 44
Q ss_pred EEEEecC
Q 007831 494 ATTFINK 500 (588)
Q Consensus 494 ~~~~~~~ 500 (588)
++++++.
T Consensus 384 ~i~vv~~ 390 (844)
T TIGR02621 384 QIAVVHL 390 (844)
T ss_pred eEEEEee
Confidence 4666644
No 45
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-48 Score=353.96 Aligned_cols=335 Identities=29% Similarity=0.511 Sum_probs=280.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
...|.++-|.|++++++...||.+|+.+|.++||...-|.|+++.|..|.|||.+|+|..++.+-- . ...-.
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v--~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------V--DGQVS 112 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------C--CCeEE
Confidence 346889999999999999999999999999999999999999999999999999999999876521 1 12346
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
+|++|.||+||-|+.+++.+|.+.+ |++++.+.+||.+++.....+++.+||+|+||||++.+..++.+++++++
T Consensus 113 vlvmchtrelafqi~~ey~rfskym-----P~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYM-----PSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhC-----CCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 8999999999999999999998876 79999999999999999999999999999999999999999999999999
Q ss_pred eeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCccc-ceEEEeeehhh
Q 007831 302 YLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL-DVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~-~~~~~~~~~~~ 379 (588)
++|+||||.|+.+ ..+.++..|++..|...|+++||||+++.++...++++.+|..+.+........ .+.|.+...+.
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke 267 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE 267 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh
Confidence 9999999999863 355788999999999999999999999999999999999999888766543333 34444444444
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007831 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
..|-..+...|.. .-.+++||+.+... | . | ..+ +|||++++||+
T Consensus 268 ~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgm 312 (387)
T KOG0329|consen 268 NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGM 312 (387)
T ss_pred hhhhhhhhhhhhhhhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhcccc
Confidence 4444444444432 24589999988755 0 0 2 223 89999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchH
Q 007831 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~ 524 (588)
|+..++.|+|||+|.+...|+||+|||||.|.+|.+++|+...++...+.++..-..-....+|+.
T Consensus 313 diervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 313 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999999999999999999998877777666655544444445543
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-45 Score=389.46 Aligned_cols=321 Identities=25% Similarity=0.407 Sum_probs=261.0
Q ss_pred HHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007831 156 KKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 156 ~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
..|+.. |+..++|-|.++|..+++|+|+++++|||+|||+||++|++.. .| .+|||.|..+|...
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G-~TLVVSPLiSLM~D 72 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EG-LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CC-CEEEECchHHHHHH
Confidence 446555 9999999999999999999999999999999999999999853 23 68999999999999
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcccCCCCCcceeEecCccc
Q 007831 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~ 310 (588)
+.+.+... ++.+.++.+..+..+....+ .. ..++++-+|++|..--..+.+.-..+.++||||||+
T Consensus 73 QV~~l~~~----------Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHC 142 (590)
T COG0514 73 QVDQLEAA----------GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHC 142 (590)
T ss_pred HHHHHHHc----------CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHH
Confidence 99999887 78888888887766654433 33 389999999999655444444456788999999999
Q ss_pred ccccC--cHHHHHHHHHhhh--hcceeEEEecccchHHHHHHHHhcCC-CeEEEecCCCCcccceEEEeeeh-hhHHHHH
Q 007831 311 LVDLG--FEDDIREVFDHFK--AQRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRAGAANLDVIQEVEYV-KQEAKIV 384 (588)
Q Consensus 311 l~~~~--~~~~i~~i~~~~~--~~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~~~~~~~~~~~~~~-~~~~k~~ 384 (588)
+.+|| |++..+.+-.... ++..++.+|||.++.+...+...|.- ...+..... ..+++...+... ....++.
T Consensus 143 iSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--dRpNi~~~v~~~~~~~~q~~ 220 (590)
T COG0514 143 ISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--DRPNLALKVVEKGEPSDQLA 220 (590)
T ss_pred HhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--CCchhhhhhhhcccHHHHHH
Confidence 99998 8777766644332 25679999999999988877666542 222333332 233333333222 2334444
Q ss_pred HHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcc
Q 007831 385 YLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464 (588)
Q Consensus 385 ~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~ 464 (588)
.+.+.......+.||||.|++.++.++++|...|+.+..|||||+.++|..+.++|..++.+|+|||.++++|||.|+|+
T Consensus 221 fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 221 FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 34433344566799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 465 ~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
+||||++|.|++.|+|.+|||||+|....|++|+.+.+
T Consensus 301 fViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 301 FVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred EEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 99999999999999999999999999999999999884
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.7e-44 Score=401.81 Aligned_cols=321 Identities=18% Similarity=0.214 Sum_probs=256.4
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 150 FPEPILKKLKAK-GIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 150 l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g------~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+..+.+.+.+. +| .|||+|.++|+.++++ +|++++|+||||||.+|++|++..+. .++++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-----------~g~qv 503 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-----------DGKQV 503 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-----------hCCeE
Confidence 344566666665 77 5999999999999975 79999999999999999999987763 36789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHhc-CCcEEEeChHHHHHHHHcccCCCC
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVKR-GVHIVVATPGRLKDMLAKKKMNLD 298 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l~ 298 (588)
+||+||++||.|+++.+.+++..+ ++++..++|+.+..++. ..+.. .++|||+||. ++ .+.+.++
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~------~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~ 572 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANF------PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFK 572 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC------CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcc
Confidence 999999999999999999987654 68888888887655443 33444 4899999993 23 3556789
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK 378 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~ 378 (588)
++++|||||+|++ +...+..+..++...|+++||||+++....+....+.++..+.....+ ...+...+....
T Consensus 573 ~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~ 645 (926)
T TIGR00580 573 DLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD 645 (926)
T ss_pred cCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC
Confidence 9999999999994 345666777788889999999999887766666566666655543322 223333332222
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcccc
Q 007831 379 QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 456 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 456 (588)
.......+...+. .+++++|||+++..++.+++.|... ++++..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 646 ~~~i~~~i~~el~-~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~ 724 (926)
T TIGR00580 646 PELVREAIRRELL-RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIET 724 (926)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 2211222333333 4678999999999999999999875 789999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCC-ChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 457 GLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 457 GlDip~v~~VI~~~~p~-s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++|+.+.
T Consensus 725 GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 725 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999999975 6789999999999999999999999765
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.3e-43 Score=389.66 Aligned_cols=373 Identities=20% Similarity=0.263 Sum_probs=270.9
Q ss_pred HHHHHHHHHC-CCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE
Q 007831 152 EPILKKLKAK-GIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI 224 (588)
Q Consensus 152 ~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g------~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li 224 (588)
..+.+.+... +| .||++|.++++.+.++ .+++++||||||||++|++|++..+. .|.+++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----------~g~q~li 315 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----------AGYQAAL 315 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEE
Confidence 4455555544 66 6999999999999976 48999999999999999999987652 4788999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhc-CCcEEEeChHHHHHHHHcccCCCCCc
Q 007831 225 VCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 225 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l~~~ 300 (588)
|+||++||.|+++.+++++..+ ++++.+++|+.+..+. ...+.. .++|+|+||+.+. ..+.+.++
T Consensus 316 laPT~~LA~Q~~~~l~~l~~~~------~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l 384 (681)
T PRK10917 316 MAPTEILAEQHYENLKKLLEPL------GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNL 384 (681)
T ss_pred EeccHHHHHHHHHHHHHHHhhc------CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhccc
Confidence 9999999999999999998765 7899999999886444 334444 4999999998773 34567899
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhH
Q 007831 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE 380 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 380 (588)
++||+||+|++ +...+..+......+++++||||+.+....+......+...+. ........+...+......
T Consensus 385 ~lvVIDE~Hrf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~~~~~~~~~~ 457 (681)
T PRK10917 385 GLVIIDEQHRF-----GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPITTVVIPDSRR 457 (681)
T ss_pred ceEEEechhhh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcEEEEeCcccH
Confidence 99999999995 2344555555555689999999987765444332222222222 2112222343333333333
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCccc--------cHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007831 381 AKIVYLLECLQKTPPPVLIFCENKA--------DVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 381 ~k~~~ll~~l~~~~~~viIF~~s~~--------~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVa 450 (588)
.++...+......+.+++|||+.++ .++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 458 ~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 537 (681)
T PRK10917 458 DEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVA 537 (681)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 3332333222356789999999654 456677788765 578999999999999999999999999999999
Q ss_pred cCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhhcc
Q 007831 451 TDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 529 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l~ 529 (588)
|+++++|+|+|++++||+++.|. ....|+||+||+||.|..|.|++++.....+.....+.. +...... -.+.+
T Consensus 538 T~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~-~~~~~dg--f~iae-- 612 (681)
T PRK10917 538 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKI-MRETNDG--FVIAE-- 612 (681)
T ss_pred CcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHH-HHHhcch--HHHHH--
Confidence 99999999999999999999997 578899999999999999999999964323322222222 2221110 01111
Q ss_pred CchhhHHHHhhccCCCCCccCCCCCcccccCcch
Q 007831 530 DPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKL 563 (588)
Q Consensus 530 ~~~~~~~~~~~~~~~~~c~~cg~~g~~~~~~~~~ 563 (588)
. ...+++.|...|-.+.|...+++.+..+-
T Consensus 613 ---~-dl~~rg~g~~~g~~q~g~~~~~~~~~~~d 642 (681)
T PRK10917 613 ---K-DLELRGPGELLGTRQSGLPEFKVADLVRD 642 (681)
T ss_pred ---H-hHhhCCCccccCceecCCCCeeEeeHhhh
Confidence 1 12346667777888888888898876543
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-43 Score=396.02 Aligned_cols=333 Identities=19% Similarity=0.282 Sum_probs=253.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007831 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
.|+++++|+.+++.+.+.+|. |+++|.++++.+++|+|++++||||||||+++.++++..+.. +.++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEE
Confidence 577899999999999999986 999999999999999999999999999999999999877642 46799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007831 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~l 303 (588)
||+|+++||.|+++.+.++.. + ++++...+|+...... ..+.++|+|+||+++..++.+....++++++|
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~-~------g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lv 139 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS-L------GMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLI 139 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh-c------CCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEE
Confidence 999999999999999988642 2 6788888887654332 22457999999999988877766678999999
Q ss_pred EecCcccccccCcHHHHHHHHHhh---hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEE--Eeee--
Q 007831 304 TLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQ--EVEY-- 376 (588)
Q Consensus 304 ViDEah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~--~~~~-- 376 (588)
|+||+|++.+.+++..++.++..+ +...|++++|||+++. .++.. ++.........+.......+.. .+..
T Consensus 140 ViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 140 VADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLIKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred EEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCccCCCCCCCCeEEEEEecCeeeecc
Confidence 999999999888888887776654 4678999999999764 34443 3322211000000000000000 0000
Q ss_pred -hhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-------------------------CCcEEEEeCCCCH
Q 007831 377 -VKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK-------------------------GVEAVAVHGGKDQ 430 (588)
Q Consensus 377 -~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~-------------------------g~~~~~ihg~~~~ 430 (588)
......+..++......++++||||+++..++.++..|... ...+..+||++++
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 218 YERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 00011122333333345789999999999999999988653 1247789999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC---------CCChhHHHHHhcccccCCC--ccEEEEEec
Q 007831 431 EEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM---------PAEIENYVHRIGRTGRCGK--TGIATTFIN 499 (588)
Q Consensus 431 ~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~---------p~s~~~y~qriGRagR~g~--~g~~~~~~~ 499 (588)
++|..+++.|++|.++|||||+++++|+|+|+..+|| ++. |.++.+|.||+|||||.|. .|.+++++.
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 9999999999999999999999999999999865444 443 5688999999999999985 677888876
Q ss_pred CC
Q 007831 500 KN 501 (588)
Q Consensus 500 ~~ 501 (588)
..
T Consensus 377 ~~ 378 (674)
T PRK01172 377 SP 378 (674)
T ss_pred Cc
Confidence 54
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.5e-42 Score=382.54 Aligned_cols=372 Identities=19% Similarity=0.258 Sum_probs=262.8
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007831 153 PILKKLKAKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 153 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
.+.+.+...+| .||++|.++|+.++++ .+.+++|+||||||++|++|++..+. .|++++||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-----------~g~qvlila 291 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-----------AGYQVALMA 291 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-----------cCCcEEEEC
Confidence 34455566688 7999999999999965 36899999999999999999987652 477899999
Q ss_pred CCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhc-CCcEEEeChHHHHHHHHcccCCCCCcce
Q 007831 227 PSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 227 Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
||++||.|+++.+.+++..+ ++++.+++|+...... ...+.. .++|+|+||+.+. ....+.++++
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~------gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-----~~~~~~~l~l 360 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPL------GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-----EKVEFKRLAL 360 (630)
T ss_pred CHHHHHHHHHHHHHHHhccc------CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-----ccccccccce
Confidence 99999999999999998765 7999999999876653 333433 4799999998774 3456789999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhh---cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh
Q 007831 303 LTLDEADRLVDLGFEDDIREVFDHFKA---QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~---~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 379 (588)
||+||+|++.. ..+..+..... .+++++||||+.+....+......+...+. ........+...+.....
T Consensus 361 vVIDEaH~fg~-----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p~~r~~i~~~~~~~~~ 433 (630)
T TIGR00643 361 VIIDEQHRFGV-----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELPPGRKPITTVLIKHDE 433 (630)
T ss_pred EEEechhhccH-----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCCCCCCceEEEEeCcch
Confidence 99999999532 22333322222 678999999987654333221111111111 111111223333222222
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccc--------cHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEE
Q 007831 380 EAKIVYLLECLQKTPPPVLIFCENKA--------DVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 449 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~--------~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLV 449 (588)
...+...+......+.+++|||+... .++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 434 ~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 513 (630)
T TIGR00643 434 KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILV 513 (630)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 22222222222235678999999764 456777777653 78899999999999999999999999999999
Q ss_pred EcCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhhc
Q 007831 450 ATDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 528 (588)
Q Consensus 450 aT~~~~~GlDip~v~~VI~~~~p~-s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~l 528 (588)
||+++++|+|+|++++||+++.|. +...|+||+||+||.|+.|.|++++.....+.....+ +.+......+ .+.+
T Consensus 514 aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl-~~~~~~~dgf--~iae- 589 (630)
T TIGR00643 514 ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRL-RVMADTLDGF--VIAE- 589 (630)
T ss_pred ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHH-HHHHhhcccH--HHHH-
Confidence 999999999999999999999987 6888999999999999999999999433233222222 2222211110 0111
Q ss_pred cCchhhHHHHhhccCCCCCccCCCCCcccccCcch
Q 007831 529 NDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKL 563 (588)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~c~~cg~~g~~~~~~~~~ 563 (588)
....++..|...|-.+.|..++++.+..+-
T Consensus 590 -----~dl~~Rg~g~~~g~~QsG~~~~~~~~~~~d 619 (630)
T TIGR00643 590 -----EDLELRGPGDLLGTKQSGYPEFRVADLVRD 619 (630)
T ss_pred -----HHHhcCCCcccCCCcccCCCcceeecHHHH
Confidence 122345667777888888888888877654
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.3e-42 Score=399.76 Aligned_cols=316 Identities=20% Similarity=0.211 Sum_probs=251.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007831 155 LKKLKAKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.+.....+| .||++|.++|+.++.+ +|++++|+||+|||.+|+.+++..+. .+++++||+||
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----------~g~qvlvLvPT 658 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----------NHKQVAVLVPT 658 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----------cCCeEEEEeCc
Confidence 334444466 7999999999999986 89999999999999999988876542 47889999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcccCCCCCcceeE
Q 007831 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lV 304 (588)
++||.|+++.+.+++... ++++.+++|+.+..++...+. ..++|+|+||+.+ ...+.+.++++||
T Consensus 659 ~eLA~Q~~~~f~~~~~~~------~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLV 727 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANW------PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLI 727 (1147)
T ss_pred HHHHHHHHHHHHHhhccC------CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEE
Confidence 999999999999876543 678888888888777655443 3589999999643 2456678999999
Q ss_pred ecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHH
Q 007831 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV 384 (588)
Q Consensus 305 iDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~ 384 (588)
|||+|++ |+ .....++.++..+|+++||||+++....++...+.++..+...... ...+.+.+..........
T Consensus 728 IDEahrf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~ 800 (1147)
T PRK10689 728 VDEEHRF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVRE 800 (1147)
T ss_pred Eechhhc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHH
Confidence 9999996 33 3355667788899999999999988888888888888777654332 223333322222222222
Q ss_pred HHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC
Q 007831 385 YLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 385 ~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~ 462 (588)
.++..+. .+++++|||+++..++.+++.|... ++.+.++||+|++.+|.+++..|++|+++|||||+++++|||+|+
T Consensus 801 ~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~ 879 (1147)
T PRK10689 801 AILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 (1147)
T ss_pred HHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccccc
Confidence 3333333 3568999999999999999999887 789999999999999999999999999999999999999999999
Q ss_pred cceEEecCCC-CChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 463 IQHVINYDMP-AEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 463 v~~VI~~~~p-~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+++||..+.. .+..+|+||+||+||.|+.|.|++++...
T Consensus 880 v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 9999954432 25678999999999999999999988654
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=378.45 Aligned_cols=339 Identities=23% Similarity=0.302 Sum_probs=271.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007831 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
|++.+.+.+..+ |..|||.|.+|||.+.+|+|++++||||||||+++.||++..+.... +.....+-.+|||.|.|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPLK 83 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcHH
Confidence 789999999998 99999999999999999999999999999999999999999988753 22234567899999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc--cCCCCCcceeEecC
Q 007831 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK--KMNLDNCRYLTLDE 307 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~--~~~l~~~~~lViDE 307 (588)
+|.+++.+.+..++..+ ++.+.+.+|+++..+.....++.+||+|+||+.|.-++... .-.|.++++|||||
T Consensus 84 ALn~Di~~rL~~~~~~~------G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE 157 (814)
T COG1201 84 ALNNDIRRRLEEPLREL------GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDE 157 (814)
T ss_pred HHHHHHHHHHHHHHHHc------CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeeh
Confidence 99999999999998876 88999999999999988888999999999999997777654 33588999999999
Q ss_pred cccccccCcHHHHHHHHHhh---hhcceeEEEecccchHHHHHHHHhcCC--CeEEEecCCCCcccceE--EEeee---h
Q 007831 308 ADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVK--PVTVNVGRAGAANLDVI--QEVEY---V 377 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~--p~~i~~~~~~~~~~~~~--~~~~~---~ 377 (588)
.|.+.+...+.++.--+..+ ..+.|.+++|||..+. ...++.+... +..+.... .....++. .-... .
T Consensus 158 iHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~-~~k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 158 IHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS-AAKKLEIKVISPVEDLIYD 235 (814)
T ss_pred hhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcc-cCCcceEEEEecCCccccc
Confidence 99998766555554433332 2378999999999754 2333333333 33332211 12222221 11111 1
Q ss_pred h-h-HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc
Q 007831 378 K-Q-EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG-VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA 454 (588)
Q Consensus 378 ~-~-~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~ 454 (588)
. . ...+..+.+.+ +....+|||+||+..++.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+++|||+.+
T Consensus 236 ~~~~~~~~~~i~~~v-~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSL 314 (814)
T COG1201 236 EELWAALYERIAELV-KKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314 (814)
T ss_pred cchhHHHHHHHHHHH-hhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccch
Confidence 1 1 12233333333 344599999999999999999999887 899999999999999999999999999999999999
Q ss_pred ccCCCCCCcceEEecCCCCChhHHHHHhcccccC-CCccEEEEEecCC
Q 007831 455 SKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC-GKTGIATTFINKN 501 (588)
Q Consensus 455 ~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~-g~~g~~~~~~~~~ 501 (588)
+.|||+.+++.||+|+.|.++..++||+||+|+. |....++++..+.
T Consensus 315 ELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 315 ELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred hhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 9999999999999999999999999999999965 7777777777663
No 53
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.4e-42 Score=395.52 Aligned_cols=303 Identities=24% Similarity=0.309 Sum_probs=241.0
Q ss_pred HHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007831 155 LKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 155 ~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.+.+.+. |+ .||++|..++|.++.|+|++++||||||||. |.++++..+.. .++++|||+||++||.
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHH
Confidence 3455555 77 8999999999999999999999999999995 55555544322 4789999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCceEEEEEcCcch-----HHHHHHHhc-CCcEEEeChHHHHHHHHcccCCCCCcceeEecC
Q 007831 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM-----RSQLEVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 234 Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~-----~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDE 307 (588)
|+++.++.++... ++.+..+.|+.+. .++...+.+ +++|+|+||++|.+.+. .+....+++|||||
T Consensus 138 Qi~~~l~~l~~~~------~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDE 209 (1176)
T PRK09401 138 QVVEKLEKFGEKV------GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDD 209 (1176)
T ss_pred HHHHHHHHHhhhc------CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEC
Confidence 9999999998754 6777777766542 233344443 58999999999998876 45566799999999
Q ss_pred cccccc-----------cCcH-HHHHHHHHhhhh------------------------cceeEEEecccchH-HHHHHHH
Q 007831 308 ADRLVD-----------LGFE-DDIREVFDHFKA------------------------QRQTLLFSATMPTK-IQNFARS 350 (588)
Q Consensus 308 ah~l~~-----------~~~~-~~i~~i~~~~~~------------------------~~q~l~~SAT~~~~-i~~~~~~ 350 (588)
||+|++ +||. +++..++..++. .+|+++||||+++. +.. .
T Consensus 210 aD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~ 286 (1176)
T PRK09401 210 VDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---K 286 (1176)
T ss_pred hHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---H
Confidence 999996 6885 678888877754 68999999999874 332 2
Q ss_pred hcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCcccc---HHHHHHHHHHcCCcEEEEeCC
Q 007831 351 ALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKAD---VDDIHEYLLLKGVEAVAVHGG 427 (588)
Q Consensus 351 ~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~---~~~l~~~L~~~g~~~~~ihg~ 427 (588)
++.++..+.++.......++.+.+.... .+...+...+...+.++||||+++.. ++.++++|...|+++..+||+
T Consensus 287 l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~ 364 (1176)
T PRK09401 287 LFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISG 364 (1176)
T ss_pred HhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCc
Confidence 3344555666666555566666655443 34445566665656789999999888 999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEE----cCccccCCCCCC-cceEEecCCCC------ChhHHHHHhccccc
Q 007831 428 KDQEEREYAISSFKAGKKDVLVA----TDVASKGLDFPD-IQHVINYDMPA------EIENYVHRIGRTGR 487 (588)
Q Consensus 428 ~~~~~R~~~~~~f~~g~~~vLVa----T~~~~~GlDip~-v~~VI~~~~p~------s~~~y~qriGRagR 487 (588)
| .+.++.|++|+++|||| |++++||||+|+ |++|||||+|. ..+.|.||+||+-.
T Consensus 365 l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 365 F-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred H-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9 23469999999999999 699999999999 89999999998 67889999999963
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.8e-41 Score=387.09 Aligned_cols=310 Identities=20% Similarity=0.217 Sum_probs=227.7
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCC--CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccc----c--cCCCCceE
Q 007831 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMP--IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMR----D--AGYPDLRT 256 (588)
Q Consensus 185 i~a~TGsGKTl~~~lp~l~~~~~~~~~~~--~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~----~--~~~~~i~~ 256 (588)
++||||||||++|.||++..++....... .....+.++|||+|+++|+.|+++.++..+..+. . ...+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999998875421000 0112467999999999999999999876433221 0 11247899
Q ss_pred EEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCCcceeEecCcccccccCcHHH----HHHHHHhhhhcc
Q 007831 257 LLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTLDEADRLVDLGFEDD----IREVFDHFKAQR 331 (588)
Q Consensus 257 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-~~~l~~~~~lViDEah~l~~~~~~~~----i~~i~~~~~~~~ 331 (588)
..++|+++..++...+.+.++|+|+||++|..++.++ ...++++++|||||+|.|.+..++.. +..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999998888888888999999999998887654 34689999999999999997644444 444444456678
Q ss_pred eeEEEecccchHHHHHHHHhcC-CCeEEEecCCCCcccceEEEeeehhhHH------------------------HHHHH
Q 007831 332 QTLLFSATMPTKIQNFARSALV-KPVTVNVGRAGAANLDVIQEVEYVKQEA------------------------KIVYL 386 (588)
Q Consensus 332 q~l~~SAT~~~~i~~~~~~~l~-~p~~i~~~~~~~~~~~~~~~~~~~~~~~------------------------k~~~l 386 (588)
|+|++|||+++. .++++.+.. .++.+.. .......++...+ ...... ....+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999874 455543332 3554432 2222222221111 111000 01122
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcC---------------------------------CcEEEEeCCCCHHHH
Q 007831 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKG---------------------------------VEAVAVHGGKDQEER 433 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g---------------------------------~~~~~ihg~~~~~~R 433 (588)
+..+. ...++||||||+..|+.++..|.... +.+.++||++++++|
T Consensus 238 l~~i~-~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 238 LDEVL-RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHh-cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 22222 35789999999999999999997531 125689999999999
Q ss_pred HHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccC-CCccEEEEEe
Q 007831 434 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC-GKTGIATTFI 498 (588)
Q Consensus 434 ~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~-g~~g~~~~~~ 498 (588)
..+++.|++|++++||||+++++|||++++++||+|+.|.++.+|+||+||+||. |..+.++++.
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999997 3444555333
No 55
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.2e-40 Score=387.11 Aligned_cols=318 Identities=22% Similarity=0.288 Sum_probs=248.9
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007831 152 EPILKKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 152 ~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
..+.+.+++ .|| .||++|.++++.+++|+|++++||||||||++++++++... ..++++|||+||++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-----------~~g~~aLVl~PTre 133 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-----------LKGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-----------hcCCeEEEEECHHH
Confidence 345566766 599 69999999999999999999999999999996666655432 14678999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeEec
Q 007831 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViD 306 (588)
|+.|+++.+..++..+. .++++..++|+.+..++.. .+..+ ++|+|+||++|.+.+... ....+++||||
T Consensus 134 La~Qi~~~l~~l~~~~~----~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVD 207 (1638)
T PRK14701 134 LVKQTVEKIESFCEKAN----LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVD 207 (1638)
T ss_pred HHHHHHHHHHHHHhhcC----CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEE
Confidence 99999999999876531 1567888899988776643 34444 899999999998776542 22678999999
Q ss_pred Ccccccc-----------cCcHHHHHH----HHH----------------------hhhhcce-eEEEecccchHHHHHH
Q 007831 307 EADRLVD-----------LGFEDDIRE----VFD----------------------HFKAQRQ-TLLFSATMPTKIQNFA 348 (588)
Q Consensus 307 Eah~l~~-----------~~~~~~i~~----i~~----------------------~~~~~~q-~l~~SAT~~~~i~~~~ 348 (588)
|||+|++ +||.+++.. ++. .++..+| ++++|||+++.. ..
T Consensus 208 EAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~ 285 (1638)
T PRK14701 208 DVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DR 285 (1638)
T ss_pred CceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HH
Confidence 9999986 588887764 332 2334455 577999998641 12
Q ss_pred HHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccH---HHHHHHHHHcCCcEEEEe
Q 007831 349 RSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADV---DDIHEYLLLKGVEAVAVH 425 (588)
Q Consensus 349 ~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~---~~l~~~L~~~g~~~~~ih 425 (588)
..++..+..+.++.......++.+.+.......+ ..++..+...+.++||||+++..+ +.+++.|...|+++..+|
T Consensus 286 ~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h 364 (1638)
T PRK14701 286 VKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVS 364 (1638)
T ss_pred HHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEec
Confidence 2334566667777665555667666655444433 456666666677899999998864 899999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEc----CccccCCCCCC-cceEEecCCCC---ChhHHHHHh-------------cc
Q 007831 426 GGKDQEEREYAISSFKAGKKDVLVAT----DVASKGLDFPD-IQHVINYDMPA---EIENYVHRI-------------GR 484 (588)
Q Consensus 426 g~~~~~~R~~~~~~f~~g~~~vLVaT----~~~~~GlDip~-v~~VI~~~~p~---s~~~y~qri-------------GR 484 (588)
|+ |..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||
T Consensus 365 ~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~ 439 (1638)
T PRK14701 365 AK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEE 439 (1638)
T ss_pred ch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhh
Confidence 95 8899999999999999999 58999999999 99999999999 888887766 99
Q ss_pred cccCCCccEEE
Q 007831 485 TGRCGKTGIAT 495 (588)
Q Consensus 485 agR~g~~g~~~ 495 (588)
+||.|..+.++
T Consensus 440 a~~~g~~~~~~ 450 (1638)
T PRK14701 440 ELKEGIPIEGV 450 (1638)
T ss_pred hcccCCcchhH
Confidence 99998765443
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2e-39 Score=354.40 Aligned_cols=311 Identities=15% Similarity=0.173 Sum_probs=232.1
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHH---------HHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHH
Q 007831 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLV---------FVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYE 237 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~---------~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~ 237 (588)
-.+|.++++.+++|+++|++|+||||||.+ |++|.+..+..-. ....++.++|++|||+||.|+..
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----PNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----cccCCcEEEEECcHHHHHHHHHH
Confidence 358999999999999999999999999986 4444444332100 01245689999999999999999
Q ss_pred HHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcH
Q 007831 238 VVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 317 (588)
.+.+..... ...+..+.+.+||... .+.....++.+|+|+|++. ....++.+++|||||||.+..++
T Consensus 241 ~i~~~vg~~---~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~-- 307 (675)
T PHA02653 241 TLLKSLGFD---EIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG-- 307 (675)
T ss_pred HHHHHhCcc---ccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--
Confidence 887765321 1346778889999763 2222233467999999752 11247889999999999998876
Q ss_pred HHHHHHHHhh-hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh----------hHHHHHHH
Q 007831 318 DDIREVFDHF-KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK----------QEAKIVYL 386 (588)
Q Consensus 318 ~~i~~i~~~~-~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l 386 (588)
+.+..++... +..+|+++||||++..+..+ ..++.+|..+.+... ....+.+.+.... ...+ ..+
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~ 383 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEK-KNI 383 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHH-HHH
Confidence 5555565544 34469999999999888776 578888887776432 2233333321110 1111 112
Q ss_pred HHHhh----cCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHH-hcCCcEEEEEcCccccCCC
Q 007831 387 LECLQ----KTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSF-KAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 387 l~~l~----~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f-~~g~~~vLVaT~~~~~GlD 459 (588)
+..+. ..++.+||||+++.+++.+++.|... ++.+..+||++++. ..+++.| ++|+.+|||||+++++|||
T Consensus 384 l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGID 461 (675)
T PHA02653 384 VTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVT 461 (675)
T ss_pred HHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcccc
Confidence 22222 24568999999999999999999887 79999999999985 4667777 6899999999999999999
Q ss_pred CCCcceEEecC---CCC---------ChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 460 FPDIQHVINYD---MPA---------EIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 460 ip~v~~VI~~~---~p~---------s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
+|+|++||++| .|. |.++|+||+|||||. +.|.|+.|+++..
T Consensus 462 Ip~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 462 IRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred ccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 99999999999 665 888999999999999 8999999998764
No 57
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3e-40 Score=324.14 Aligned_cols=279 Identities=35% Similarity=0.571 Sum_probs=226.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007831 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~ 299 (588)
|.++|+-|+|+|+.|+++.+++|-.++ ..|.++..+++||.-.++|...+..|.||+|+||+|+.+++.+..+.+..
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~---~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHT---SNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhc---CChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 789999999999999999998886654 34678888999999999999999999999999999999999999999999
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhh------cceeEEEecccch-HHHHHHHHhcCCCeEEEecCCCCcccceEE
Q 007831 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKA------QRQTLLFSATMPT-KIQNFARSALVKPVTVNVGRAGAANLDVIQ 372 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~------~~q~l~~SAT~~~-~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~ 372 (588)
|+++|+||||.++..|+.+.|..+...++. ..|.++.|||+.- ++..+....+.-|..+...........+..
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999998888887777653 3588999999842 344455566666666655444332222222
Q ss_pred Eeeehhh--H----------------------------HHHHHHHHHh---------hc-CCCCEEEEeCccccHHHHHH
Q 007831 373 EVEYVKQ--E----------------------------AKIVYLLECL---------QK-TPPPVLIFCENKADVDDIHE 412 (588)
Q Consensus 373 ~~~~~~~--~----------------------------~k~~~ll~~l---------~~-~~~~viIF~~s~~~~~~l~~ 412 (588)
.+..+.. . ..+.....++ .+ .-.+.||||.++.+|+.+.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 1111100 0 0011111111 11 23589999999999999999
Q ss_pred HHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCC
Q 007831 413 YLLLKG---VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 413 ~L~~~g---~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g 489 (588)
++..+| +.++++||+..+.+|...++.|+.+..++||||++++||+||.++-.+||..+|.+..+|+|||||+||+-
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998874 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCC
Q 007831 490 KTGIATTFINKN 501 (588)
Q Consensus 490 ~~g~~~~~~~~~ 501 (588)
+-|.|+.++...
T Consensus 604 rmglaislvat~ 615 (725)
T KOG0349|consen 604 RMGLAISLVATV 615 (725)
T ss_pred hcceeEEEeecc
Confidence 999999999766
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.1e-39 Score=344.63 Aligned_cols=314 Identities=21% Similarity=0.242 Sum_probs=245.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++...+ .|+.++||+||++||.|.++.+..
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 54 79999999999999999 99999999999999999997653 478899999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHccc-------------------------C
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKK-------------------------M 295 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~-------------------------~ 295 (588)
++..+ ++++++++||.+.. ......+++|+|+|...| .|.|..+- .
T Consensus 167 l~~~l------Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (656)
T PRK12898 167 LYEAL------GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQL 238 (656)
T ss_pred HHhhc------CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhh
Confidence 98876 89999999997643 344456799999999877 44443221 1
Q ss_pred CCCCcceeEecCccccc-cc-----------------CcH--------------------------------HHHHHHH-
Q 007831 296 NLDNCRYLTLDEADRLV-DL-----------------GFE--------------------------------DDIREVF- 324 (588)
Q Consensus 296 ~l~~~~~lViDEah~l~-~~-----------------~~~--------------------------------~~i~~i~- 324 (588)
....+.+.||||+|.++ |. .+. ..++.++
T Consensus 239 v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~ 318 (656)
T PRK12898 239 LLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAE 318 (656)
T ss_pred cccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhC
Confidence 23567899999999865 10 000 0001110
Q ss_pred -----------------Hhhhh----------------------------------------------------------
Q 007831 325 -----------------DHFKA---------------------------------------------------------- 329 (588)
Q Consensus 325 -----------------~~~~~---------------------------------------------------------- 329 (588)
..+..
T Consensus 319 ~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~ 398 (656)
T PRK12898 319 SLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLAR 398 (656)
T ss_pred cchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeee
Confidence 00000
Q ss_pred ---------cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhc---CCCCE
Q 007831 330 ---------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPV 397 (588)
Q Consensus 330 ---------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~---~~~~v 397 (588)
...+.+||||.+....++...+..+++.+...... .....+.+.+.....|+..+...+.. .+.++
T Consensus 399 It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 399 ITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred ehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 01356899999988888888888887776554433 22233334455666777777776654 46789
Q ss_pred EEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC---Ccc-----eEEec
Q 007831 398 LIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP---DIQ-----HVINY 469 (588)
Q Consensus 398 iIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip---~v~-----~VI~~ 469 (588)
||||+|+..++.++..|...|+++..+||.++ +|...+..|..+...|+|||++++||+||+ +|. |||+|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 99999999999999999999999999999865 455556666666678999999999999999 676 99999
Q ss_pred CCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 470 DMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 470 ~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++|.|...|.||+|||||.|..|.+++|++.+
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 99999999999999999999999999999876
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.3e-38 Score=341.30 Aligned_cols=306 Identities=18% Similarity=0.186 Sum_probs=221.9
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..... ....++|||+||++|+.|+.+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~---------~~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE---------NYEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh---------cCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999998764422 22222 12348999999999999999999998
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007831 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
+. .+...+..+.+|.... .+.+|+|+||+++..... ..+.++++||+||||++.. ..+..
T Consensus 182 ~~------~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~ 241 (501)
T PHA02558 182 RL------FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTS 241 (501)
T ss_pred cc------ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHH
Confidence 63 2234555566664432 346999999999865432 2467899999999999975 45677
Q ss_pred HHHhhhhcceeEEEecccchHHHHHHH-HhcCCCeEEEecCC-----CC-cccceE--------------------EEee
Q 007831 323 VFDHFKAQRQTLLFSATMPTKIQNFAR-SALVKPVTVNVGRA-----GA-ANLDVI--------------------QEVE 375 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~i~~~~~-~~l~~p~~i~~~~~-----~~-~~~~~~--------------------~~~~ 375 (588)
++..++..+++++||||++........ ..+..|+...+... +. ....+. ..+.
T Consensus 242 il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
T PHA02558 242 IITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIK 321 (501)
T ss_pred HHHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHH
Confidence 777787778999999999754221110 11111221111100 00 000000 0000
Q ss_pred eh-hhHHH---HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc
Q 007831 376 YV-KQEAK---IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT 451 (588)
Q Consensus 376 ~~-~~~~k---~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT 451 (588)
.. ....+ +..+...+.+.+.+++|||.+..+++.+++.|...|+++..+||++++++|..+++.|++|+..|||||
T Consensus 322 ~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 322 YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 00 11111 222333334456789999999999999999999999999999999999999999999999999999998
Q ss_pred -CccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEe
Q 007831 452 -DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498 (588)
Q Consensus 452 -~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~ 498 (588)
+++++|+|+|++++||+++++.|...|+||+||++|.+..+...+++
T Consensus 402 ~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 402 YGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 89999999999999999999999999999999999997655433333
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.1e-39 Score=333.86 Aligned_cols=296 Identities=19% Similarity=0.191 Sum_probs=210.1
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007831 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++. -.+..++|
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---------~~~~~~~~ 62 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------QKADRVIIALPTRATINAMYRRAKELFG---------SNLGLLHS 62 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------CCCCeEEEEeehHHHHHHHHHHHHHHhC---------cccEEeec
Confidence 58999999999999999999977543 2467899999999999999999999863 13344444
Q ss_pred CcchH------------HHHHHHh------cCCcEEEeChHHHHHHHHccc----CCC--CCcceeEecCcccccccCcH
Q 007831 262 GVDMR------------SQLEVVK------RGVHIVVATPGRLKDMLAKKK----MNL--DNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 262 g~~~~------------~~~~~l~------~~~~IvV~Tp~~L~~~l~~~~----~~l--~~~~~lViDEah~l~~~~~~ 317 (588)
+.... ....... -..+|+|+||+++...+.... ..+ -..++|||||+|.+.++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~ 142 (358)
T TIGR01587 63 SSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLA 142 (358)
T ss_pred cHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHH
Confidence 33211 0001111 136799999999988776521 111 12378999999999987654
Q ss_pred HHHHHHHHhhh-hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeee-----hhhHHHHHHHHHHhh
Q 007831 318 DDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY-----VKQEAKIVYLLECLQ 391 (588)
Q Consensus 318 ~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~-----~~~~~k~~~ll~~l~ 391 (588)
. +..++..+. ...|+++||||+|..+..++......+............. ..+.+.. ......+..++..+
T Consensus 143 ~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~- 219 (358)
T TIGR01587 143 L-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRF-ERHRFIKIESDKVGEISSLERLLEFI- 219 (358)
T ss_pred H-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccccc-ccccceeeccccccCHHHHHHHHHHh-
Confidence 4 666666655 4679999999999888877766543322111111100000 0111111 11222333344333
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHH----HHHHhcCCcEEEEEcCccccCCCCCCcce
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLKGV--EAVAVHGGKDQEEREYA----ISSFKAGKKDVLVATDVASKGLDFPDIQH 465 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~----~~~f~~g~~~vLVaT~~~~~GlDip~v~~ 465 (588)
..++++||||+++..++.+++.|...+. .+..+||++++.+|... ++.|++|+.+|||||+++++|+|++ +++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCE
Confidence 2467999999999999999999988876 48999999999999764 8899999999999999999999995 889
Q ss_pred EEecCCCCChhHHHHHhcccccCCCcc----EEEEEecCC
Q 007831 466 VINYDMPAEIENYVHRIGRTGRCGKTG----IATTFINKN 501 (588)
Q Consensus 466 VI~~~~p~s~~~y~qriGRagR~g~~g----~~~~~~~~~ 501 (588)
||++..| +++|+||+||+||.|+.+ ..++|....
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9998776 889999999999988643 556665544
No 61
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.7e-38 Score=363.48 Aligned_cols=293 Identities=23% Similarity=0.315 Sum_probs=225.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 152 EPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.++.+.+.+.....|+++|..++|.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTreL 133 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHHH
Confidence 34556666654457999999999999999999999999999996 66777655432 47899999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCce---EEEEEcCcchHHHH---HHHhc-CCcEEEeChHHHHHHHHcccCCCCCcceeE
Q 007831 232 ARQTYEVVEQFLTPMRDAGYPDLR---TLLCIGGVDMRSQL---EVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~---~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lV 304 (588)
|.|+++.+..++..+ +++ +.+++||.+..++. ..+.+ +++|+|+||++|.+.+..-. . .++++|
T Consensus 134 a~Qi~~~l~~l~~~~------~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iV 204 (1171)
T TIGR01054 134 VIQVAEKISSLAEKA------GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIF 204 (1171)
T ss_pred HHHHHHHHHHHHHhc------CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEE
Confidence 999999999998654 343 34577888776543 33444 59999999999988776421 2 899999
Q ss_pred ecCcccccc-----------cCcHHH-HHHHHH----------------------hhhhcce--eEEEecc-cchHHHHH
Q 007831 305 LDEADRLVD-----------LGFEDD-IREVFD----------------------HFKAQRQ--TLLFSAT-MPTKIQNF 347 (588)
Q Consensus 305 iDEah~l~~-----------~~~~~~-i~~i~~----------------------~~~~~~q--~l~~SAT-~~~~i~~~ 347 (588)
|||||+|++ +||.++ +..++. .++..+| +++|||| +|..+..
T Consensus 205 vDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~- 283 (1171)
T TIGR01054 205 VDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA- 283 (1171)
T ss_pred EeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH-
Confidence 999999998 788764 555432 3444555 5678999 5655432
Q ss_pred HHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCcc---ccHHHHHHHHHHcCCcEEEE
Q 007831 348 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENK---ADVDDIHEYLLLKGVEAVAV 424 (588)
Q Consensus 348 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~---~~~~~l~~~L~~~g~~~~~i 424 (588)
.++.++..+.++.......++.+.+..... +...+.+.+...+.++||||+++ ..|+.+++.|...|+++..+
T Consensus 284 --~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~l 359 (1171)
T TIGR01054 284 --KLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAY 359 (1171)
T ss_pred --HHcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEE
Confidence 234455556666665555566666544333 12344555555567899999999 99999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCcEEEEE----cCccccCCCCCC-cceEEecCCCC
Q 007831 425 HGGKDQEEREYAISSFKAGKKDVLVA----TDVASKGLDFPD-IQHVINYDMPA 473 (588)
Q Consensus 425 hg~~~~~~R~~~~~~f~~g~~~vLVa----T~~~~~GlDip~-v~~VI~~~~p~ 473 (588)
||++++ .+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 360 hg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 360 HATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred eCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999974 6899999999999999 599999999999 89999999995
No 62
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=322.74 Aligned_cols=335 Identities=21% Similarity=0.325 Sum_probs=268.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007831 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
..+++.+|+++.+.|+..|++.+.|+|.-++.. ++.|+|.+++.+|+||||++.-++-+..++. .|.+.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----------~g~Km 264 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----------GGKKM 264 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------CCCeE
Confidence 467889999999999999999999999999988 5699999999999999999999998887765 57789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcccCCCC
Q 007831 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE----VVKRGVHIVVATPGRLKDMLAKKKMNLD 298 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~----~l~~~~~IvV~Tp~~L~~~l~~~~~~l~ 298 (588)
||++|..+||+|-++.|+.-..++ ++.+..-.|..-++.... .....+||||+|++.+ |++.+....+.
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~L------glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg~~lg 337 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKL------GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTGKDLG 337 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcc------cceEEEEechhhhcccCCccccCCCCCCcEEEeechhH-HHHHHcCCccc
Confidence 999999999999999999887777 788877777554443321 1123589999999999 55555557799
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHh---hhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEee
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDH---FKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~---~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 375 (588)
++..|||||+|.+.+...++.+..++.. +-+..|+|.+|||..++ ..+++.+--+++...- ....+..++.
T Consensus 338 diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlv 411 (830)
T COG1202 338 DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLV 411 (830)
T ss_pred ccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeee
Confidence 9999999999999986666666555544 34578999999999776 4667766555554432 2233444444
Q ss_pred ehh-hHHHHHHHHHHhh---------cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007831 376 YVK-QEAKIVYLLECLQ---------KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 376 ~~~-~~~k~~~ll~~l~---------~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~ 445 (588)
+.. ...|+..+..... ...+++|||++|+..|..++.+|..+|+.+..||+|++..+|..+...|.++++
T Consensus 412 f~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l 491 (830)
T COG1202 412 FARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL 491 (830)
T ss_pred eecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc
Confidence 444 3444433333322 235799999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCccccCCCCCCcceEE---ecCCC-CChhHHHHHhcccccCCC--ccEEEEEecCC
Q 007831 446 DVLVATDVASKGLDFPDIQHVI---NYDMP-AEIENYVHRIGRTGRCGK--TGIATTFINKN 501 (588)
Q Consensus 446 ~vLVaT~~~~~GlDip~v~~VI---~~~~p-~s~~~y~qriGRagR~g~--~g~~~~~~~~~ 501 (588)
.++|+|.+++.|+|||+-++++ -++.- -|+..|.||.|||||.+. .|.+++++.+.
T Consensus 492 ~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 492 AAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999999877654 23333 389999999999999875 58888888765
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-37 Score=311.52 Aligned_cols=320 Identities=23% Similarity=0.330 Sum_probs=241.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...++.+|......++.+ |++++.|||.|||+++++.+...+.+. .+ ++|+++||+-|+.|+.+.+.++
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHHHHH
Confidence 457899999998888876 999999999999999988888776552 34 8999999999999999999998
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007831 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
+. .|.-.++.++|.....++...+.+ .+|+|+||+.+.+-+..+.+++.++.++|||||||-...--...+..
T Consensus 82 ~~------ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~ 154 (542)
T COG1111 82 TG------IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAK 154 (542)
T ss_pred hC------CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHH
Confidence 64 457788899999888877776666 49999999999999989999999999999999999776543344555
Q ss_pred HHHhhhhcceeEEEecccchHH---HHHHHHhcCCCeEEEe---------------------------------------
Q 007831 323 VFDHFKAQRQTLLFSATMPTKI---QNFARSALVKPVTVNV--------------------------------------- 360 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~i---~~~~~~~l~~p~~i~~--------------------------------------- 360 (588)
-+-.....+.++++|||+.... ++.+..+-...+.+..
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 4445566778999999984322 2221111111111100
Q ss_pred ------------cCCCCccc---ceE-------EEe---------------------------------eehh-------
Q 007831 361 ------------GRAGAANL---DVI-------QEV---------------------------------EYVK------- 378 (588)
Q Consensus 361 ------------~~~~~~~~---~~~-------~~~---------------------------------~~~~------- 378 (588)
........ ... ... .|+.
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 00000000 000 000 0000
Q ss_pred -------------------------------hHHHHHHHHHHhh-----cCCCCEEEEeCccccHHHHHHHHHHcCCcEE
Q 007831 379 -------------------------------QEAKIVYLLECLQ-----KTPPPVLIFCENKADVDDIHEYLLLKGVEAV 422 (588)
Q Consensus 379 -------------------------------~~~k~~~ll~~l~-----~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~ 422 (588)
...|+..+.+.+. ..+.++|||++.+..++.+.++|...|..+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 0011122222221 1245899999999999999999999988875
Q ss_pred -EE--------eCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccE
Q 007831 423 -AV--------HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 493 (588)
Q Consensus 423 -~i--------hg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~ 493 (588)
.+ ..||+|.++.++++.|+.|.++|||||+++++|||+|+++.||+|++-.|+..++||.|||||. +.|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 22 3589999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred EEEEecCC
Q 007831 494 ATTFINKN 501 (588)
Q Consensus 494 ~~~~~~~~ 501 (588)
++++++.+
T Consensus 474 v~vLvt~g 481 (542)
T COG1111 474 VVVLVTEG 481 (542)
T ss_pred EEEEEecC
Confidence 99999987
No 64
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.9e-38 Score=348.97 Aligned_cols=302 Identities=20% Similarity=0.237 Sum_probs=232.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccccc
Q 007831 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDA 249 (588)
Q Consensus 170 Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~ 249 (588)
-.+.+..+.+++++|++|+||||||.+|.++++.... .+++++|+.|||++|.|+++.+.+.+..
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~---- 71 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGE---- 71 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCC----
Confidence 3455666678899999999999999999999987541 3468999999999999999988655421
Q ss_pred CCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcc-cccccCcHHH-HHHHHHhh
Q 007831 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD-RLVDLGFEDD-IREVFDHF 327 (588)
Q Consensus 250 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah-~l~~~~~~~~-i~~i~~~~ 327 (588)
..+..+++.+++.+ ......+|+|+|||+|.+++.. ...++++++|||||+| ++++.++... +..+...+
T Consensus 72 -~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l 143 (819)
T TIGR01970 72 -AVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSL 143 (819)
T ss_pred -CcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhc
Confidence 11455665555432 1234579999999999998876 4578999999999999 5777655432 34566667
Q ss_pred hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHH-----HHHHHHhhcCCCCEEEEeC
Q 007831 328 KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI-----VYLLECLQKTPPPVLIFCE 402 (588)
Q Consensus 328 ~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~-----~~ll~~l~~~~~~viIF~~ 402 (588)
+.+.|+|+||||++... ...++.++..+.+... ...+...+.......++ ..+...+....+.+|||++
T Consensus 144 r~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlp 217 (819)
T TIGR01970 144 REDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLP 217 (819)
T ss_pred CCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 78899999999999763 3456655544443322 12233333222222221 2333444455678999999
Q ss_pred ccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC-----
Q 007831 403 NKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE----- 474 (588)
Q Consensus 403 s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s----- 474 (588)
+..+++.+++.|.. .++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||++++|+.
T Consensus 218 g~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~ 297 (819)
T TIGR01970 218 GQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDP 297 (819)
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccc
Confidence 99999999999987 4789999999999999999999999999999999999999999999999999999853
Q ss_pred -------------hhHHHHHhcccccCCCccEEEEEecCC
Q 007831 475 -------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 -------------~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
-.+|.||+|||||. ..|.|+.|+++.
T Consensus 298 ~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 298 KTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred ccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 34699999999999 899999999865
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.5e-38 Score=342.83 Aligned_cols=316 Identities=22% Similarity=0.276 Sum_probs=237.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++..++ .|+.++||+||++||.|.++.+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-----------~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-----------EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-----------cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 65 79999999999998887 99999999999999999986654 377899999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCcccccc-
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLVD- 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~~- 313 (588)
++..+ +++++++.|+.+...+.... .+++|+++||++| .|+|..+ ...++.+.++|+||||.|+=
T Consensus 142 l~~~l------Gl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiD 214 (790)
T PRK09200 142 VYEFL------GLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLD 214 (790)
T ss_pred HHhhc------CCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceec
Confidence 99877 99999999998843333333 4589999999999 5655543 23568899999999999861
Q ss_pred c---------------CcHHHHHHHHHhhhhc------------------------------------------------
Q 007831 314 L---------------GFEDDIREVFDHFKAQ------------------------------------------------ 330 (588)
Q Consensus 314 ~---------------~~~~~i~~i~~~~~~~------------------------------------------------ 330 (588)
. .+...+..+...+...
T Consensus 215 ea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 294 (790)
T PRK09200 215 EAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALR 294 (790)
T ss_pred cCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHH
Confidence 0 0011111111111000
Q ss_pred ---------------------------------------------------------------------ceeEEEecccc
Q 007831 331 ---------------------------------------------------------------------RQTLLFSATMP 341 (588)
Q Consensus 331 ---------------------------------------------------------------------~q~l~~SAT~~ 341 (588)
..+.+||+|..
T Consensus 295 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~ 374 (790)
T PRK09200 295 AHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAK 374 (790)
T ss_pred HHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCCh
Confidence 12345555554
Q ss_pred hHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcC
Q 007831 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
..-.+|...+-..-+.+. ...+....+. ....+.....|...++..+.. .+.|+||||+|+..++.++..|...|
T Consensus 375 t~~~e~~~~Y~l~v~~IP-t~kp~~r~d~-~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g 452 (790)
T PRK09200 375 TEEKEFFEVYNMEVVQIP-TNRPIIRIDY-PDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG 452 (790)
T ss_pred HHHHHHHHHhCCcEEECC-CCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 333333333322211111 1111111111 122344566777777776643 67899999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC---CCcc-----eEEecCCCCChhHHHHHhcccccCCC
Q 007831 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF---PDIQ-----HVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDi---p~v~-----~VI~~~~p~s~~~y~qriGRagR~g~ 490 (588)
+++..+||.+.+.++..+...++.| .|+|||++++||+|+ |+|. |||+|++|.|...|.||+|||||.|.
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGD 530 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCC
Confidence 9999999999998888887777766 799999999999999 6998 99999999999999999999999999
Q ss_pred ccEEEEEecCCC
Q 007831 491 TGIATTFINKNQ 502 (588)
Q Consensus 491 ~g~~~~~~~~~~ 502 (588)
+|.+++|++.++
T Consensus 531 ~G~s~~~is~eD 542 (790)
T PRK09200 531 PGSSQFFISLED 542 (790)
T ss_pred CeeEEEEEcchH
Confidence 999999998763
No 66
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-38 Score=309.34 Aligned_cols=324 Identities=20% Similarity=0.294 Sum_probs=246.8
Q ss_pred HHHHHHHHC-CCCCC-cHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007831 153 PILKKLKAK-GIVQP-TPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 153 ~l~~~l~~~-g~~~p-~~~Q~~~i~~il~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.+.++|++. |+.++ ++.|.+|+..+..+ +||.+++|||+||++||+||.|.+ +..+||+.|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLi 71 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLI 71 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHH
Confidence 456677776 77665 89999999998855 799999999999999999999974 34899999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---H---hcCCcEEEeChHHHHHHHH----cccCCCCC
Q 007831 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---V---KRGVHIVVATPGRLKDMLA----KKKMNLDN 299 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l---~~~~~IvV~Tp~~L~~~l~----~~~~~l~~ 299 (588)
+|...+.+.+.++ .+++..+....+..+.... + +....+++.||+....-.. +...+-+.
T Consensus 72 ALIkDQiDHL~~L----------KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~ 141 (641)
T KOG0352|consen 72 ALIKDQIDHLKRL----------KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDV 141 (641)
T ss_pred HHHHHHHHHHHhc----------CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhce
Confidence 9999999999887 5555555555554444332 2 2357899999997533222 22233456
Q ss_pred cceeEecCcccccccC--cHHHHHHHHH--hhhhcceeEEEecccchHHHHHHH--HhcCCCeEEEecCCCCcccceEEE
Q 007831 300 CRYLTLDEADRLVDLG--FEDDIREVFD--HFKAQRQTLLFSATMPTKIQNFAR--SALVKPVTVNVGRAGAANLDVIQE 373 (588)
Q Consensus 300 ~~~lViDEah~l~~~~--~~~~i~~i~~--~~~~~~q~l~~SAT~~~~i~~~~~--~~l~~p~~i~~~~~~~~~~~~~~~ 373 (588)
+.|+|+||||+...|| |+++.-.+-. ..-+....+.+|||.++.+++.+- -.+.+|+.+.-... -..++.+.
T Consensus 142 L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~--FR~NLFYD 219 (641)
T KOG0352|consen 142 LRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT--FRDNLFYD 219 (641)
T ss_pred eeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc--hhhhhhHH
Confidence 7899999999999998 5555443321 112344589999999999887543 34567776543322 22233333
Q ss_pred eeehhh-HHHHHHH----HHHhhc----------CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Q 007831 374 VEYVKQ-EAKIVYL----LECLQK----------TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIS 438 (588)
Q Consensus 374 ~~~~~~-~~k~~~l----l~~l~~----------~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 438 (588)
+.+.+. ++-+..| ...|.+ ..+..||||.|++.|+.++-.|...|+++.+||.|+...+|..+.+
T Consensus 220 ~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 220 NHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred HHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHH
Confidence 222221 1112222 223321 1346899999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 439 ~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
.|.+++..||+||..+++|+|-|+|++|||+++|.|+.-|.|..|||||+|....|-.++..++
T Consensus 300 ~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 300 KWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred HHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999998874
No 67
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=344.98 Aligned_cols=333 Identities=22% Similarity=0.309 Sum_probs=252.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEE
Q 007831 147 DMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIV 225 (588)
Q Consensus 147 ~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil 225 (588)
.+.+++.+.+.+...++..+++.|+.++...+ +++|+++++|||||||+++++.+++.+.+ .+.++|||
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~----------~~~k~vYi 82 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE----------GGGKVVYI 82 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh----------cCCcEEEE
Confidence 34578889999998899889888888887765 66999999999999999999999998866 25689999
Q ss_pred cCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEe
Q 007831 226 CPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTL 305 (588)
Q Consensus 226 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lVi 305 (588)
||+++||.+.++.++++ ..+ ++++...+|+.+.... ...+++|+|+||++|-..+.+....+..+++|||
T Consensus 83 vPlkALa~Ek~~~~~~~-~~~------GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvVi 152 (766)
T COG1204 83 VPLKALAEEKYEEFSRL-EEL------GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVI 152 (766)
T ss_pred eChHHHHHHHHHHhhhH-Hhc------CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEE
Confidence 99999999999999943 222 9999999999875542 1245899999999996666666667889999999
Q ss_pred cCcccccccCcHHHHHHHHHhhhh---cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcc--cceEEEeeehh--
Q 007831 306 DEADRLVDLGFEDDIREVFDHFKA---QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN--LDVIQEVEYVK-- 378 (588)
Q Consensus 306 DEah~l~~~~~~~~i~~i~~~~~~---~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~--~~~~~~~~~~~-- 378 (588)
||+|.+.+...+..+..|...+.. ..|++++|||+|+. .+++...-.+++ ...-+..... ....+.+....
T Consensus 153 DEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~ 230 (766)
T COG1204 153 DEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGK 230 (766)
T ss_pred eeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCc
Confidence 999999998666777777666543 37999999999976 344443333333 1111111111 11111111111
Q ss_pred -------hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc----------------------------------
Q 007831 379 -------QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK---------------------------------- 417 (588)
Q Consensus 379 -------~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~---------------------------------- 417 (588)
.......++....+.++++||||+|+..+...++.|...
T Consensus 231 ~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 231 KKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred cccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 223333334444456789999999999999999998731
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----ecC-----CCCChhHHHHHhccc
Q 007831 418 ---GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----NYD-----MPAEIENYVHRIGRT 485 (588)
Q Consensus 418 ---g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI----~~~-----~p~s~~~y~qriGRa 485 (588)
-..++.+|+|++.++|..+.+.|+.|+++|||||++++.|+|+|+-.+|| .|+ .+-++-+|.|++|||
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRA 390 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRA 390 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcC
Confidence 01256789999999999999999999999999999999999999987777 555 456789999999999
Q ss_pred ccCCC--ccEEEEEecCC
Q 007831 486 GRCGK--TGIATTFINKN 501 (588)
Q Consensus 486 gR~g~--~g~~~~~~~~~ 501 (588)
||.|- .|.++++.+..
T Consensus 391 GRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 391 GRPGYDDYGEAIILATSH 408 (766)
T ss_pred CCCCcCCCCcEEEEecCc
Confidence 99975 46777777554
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.6e-37 Score=344.83 Aligned_cols=342 Identities=21% Similarity=0.322 Sum_probs=276.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007831 151 PEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
...+..++.+.|+..|+++|.+|+..+.+|+|+|++.+||||||.+|++|++.+++.. ...++|+|.||++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~---------~~a~AL~lYPtnA 126 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD---------PSARALLLYPTNA 126 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC---------cCccEEEEechhh
Confidence 3445788888999999999999999999999999999999999999999999999874 3448899999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc----cCCCCCcceeEec
Q 007831 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK----KMNLDNCRYLTLD 306 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~----~~~l~~~~~lViD 306 (588)
||+.+.+.+.++...+.. ++++..++|++...+....+.+.++|++|||.+|..++.+. ...+++++|||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~----~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvD 202 (851)
T COG1205 127 LANDQAERLRELISDLPG----KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVD 202 (851)
T ss_pred hHhhHHHHHHHHHHhCCC----cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEe
Confidence 999999999999877621 58888999998888877788889999999999997766553 2346789999999
Q ss_pred CcccccccCcHHHHHHHHHhh-------hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeeh--
Q 007831 307 EADRLVDLGFEDDIREVFDHF-------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV-- 377 (588)
Q Consensus 307 Eah~l~~~~~~~~i~~i~~~~-------~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~-- 377 (588)
|+|.+-.. |+..+..+++.+ +...|+|+.|||+.+. ..++..+........+...+.............
T Consensus 203 ElHtYrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~ 280 (851)
T COG1205 203 ELHTYRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPI 280 (851)
T ss_pred cceecccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcc
Confidence 99998754 666666555544 3467999999999766 456777776665554444443333322222211
Q ss_pred ---------hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHH----HHHHHcC----CcEEEEeCCCCHHHHHHHHHHH
Q 007831 378 ---------KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIH----EYLLLKG----VEAVAVHGGKDQEEREYAISSF 440 (588)
Q Consensus 378 ---------~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~----~~L~~~g----~~~~~ihg~~~~~~R~~~~~~f 440 (588)
........+...+...+-++|+|+.++..++.+. ..+...+ ..+..++|++...+|.++...|
T Consensus 281 ~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~ 360 (851)
T COG1205 281 RELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEF 360 (851)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHH
Confidence 2334455666666777889999999999999997 4455555 6788999999999999999999
Q ss_pred hcCCcEEEEEcCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccccCCCccEEEEEecCCCChhHH
Q 007831 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTL 507 (588)
Q Consensus 441 ~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~-s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~ 507 (588)
++|+..++++|+++..|+|+.+++.||+++.|. +..+++||.||+||.++.+..+++...+.-..+.
T Consensus 361 ~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy 428 (851)
T COG1205 361 KEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYY 428 (851)
T ss_pred hcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhh
Confidence 999999999999999999999999999999999 8999999999999999888888777755433333
No 69
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.4e-37 Score=345.55 Aligned_cols=302 Identities=19% Similarity=0.255 Sum_probs=230.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccccc
Q 007831 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDA 249 (588)
Q Consensus 170 Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~ 249 (588)
-.+.+..+.++++++++|+||||||.+|.++++... ...++++|++|||++|.|+++.+.+....
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~-----------~~~~~ilvlqPrR~aA~qia~rva~~l~~---- 74 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG-----------GINGKIIMLEPRRLAARNVAQRLAEQLGE---- 74 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC-----------CcCCeEEEECChHHHHHHHHHHHHHHhCc----
Confidence 345566667889999999999999999999888542 12348999999999999999988655421
Q ss_pred CCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccc-ccccCcH-HHHHHHHHhh
Q 007831 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR-LVDLGFE-DDIREVFDHF 327 (588)
Q Consensus 250 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~-l~~~~~~-~~i~~i~~~~ 327 (588)
..+..+++.+++.+.. ....+|+|+|||+|.+++.. ...++.+++|||||+|. .++..+. ..+..+++.+
T Consensus 75 -~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l 146 (812)
T PRK11664 75 -KPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGL 146 (812)
T ss_pred -ccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC
Confidence 1256777777664322 13468999999999998876 45799999999999996 4443321 2334556667
Q ss_pred hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHH-----HHHHHhhcCCCCEEEEeC
Q 007831 328 KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV-----YLLECLQKTPPPVLIFCE 402 (588)
Q Consensus 328 ~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-----~ll~~l~~~~~~viIF~~ 402 (588)
+.+.|+++||||++... + ..++.++..+.+... ...+.+.+.......++. .+...+....+.+||||+
T Consensus 147 r~~lqlilmSATl~~~~--l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlp 220 (812)
T PRK11664 147 RDDLKLLIMSATLDNDR--L-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLP 220 (812)
T ss_pred CccceEEEEecCCCHHH--H-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 78899999999998752 3 455655544443322 123333333333333322 233444555789999999
Q ss_pred ccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCC-----
Q 007831 403 NKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE----- 474 (588)
Q Consensus 403 s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s----- 474 (588)
++.+++.+++.|.. .++.+..+||++++.+|..++..|++|+.+|||||+++++|||||+|++||++++++.
T Consensus 221 g~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~ 300 (812)
T PRK11664 221 GVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDP 300 (812)
T ss_pred CHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccc
Confidence 99999999999987 5788999999999999999999999999999999999999999999999999888753
Q ss_pred -------------hhHHHHHhcccccCCCccEEEEEecCC
Q 007831 475 -------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 -------------~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
-++|.||.|||||. ..|.|+.++++.
T Consensus 301 ~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 301 KTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred cCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 35899999999999 699999999865
No 70
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-37 Score=343.82 Aligned_cols=322 Identities=21% Similarity=0.320 Sum_probs=258.4
Q ss_pred HHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007831 152 EPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 152 ~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
+++...+... |...++|-|.++|..++.|+|+++.+|||.||++||+||++- .++.+|||.|..+
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--------------~~gitvVISPL~S 315 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--------------LGGVTVVISPLIS 315 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc--------------cCCceEEeccHHH
Confidence 4566666665 999999999999999999999999999999999999999984 2448999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HHhc---CCcEEEeChHHHHHH--HHcccCCCCC---
Q 007831 231 LARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VVKR---GVHIVVATPGRLKDM--LAKKKMNLDN--- 299 (588)
Q Consensus 231 La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~---~~~IvV~Tp~~L~~~--l~~~~~~l~~--- 299 (588)
|.+.+...+... +|....+.++....++.. .+.. .++|+..||+++... +......+..
T Consensus 316 Lm~DQv~~L~~~----------~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~ 385 (941)
T KOG0351|consen 316 LMQDQVTHLSKK----------GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGL 385 (941)
T ss_pred HHHHHHHhhhhc----------CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCe
Confidence 998877666443 788889998877764433 3333 489999999988432 2222233444
Q ss_pred cceeEecCcccccccC--cHHHHHHHHH---hhhhcceeEEEecccchHHHHHHHHhcC--CCeEEEecCCCCcccceEE
Q 007831 300 CRYLTLDEADRLVDLG--FEDDIREVFD---HFKAQRQTLLFSATMPTKIQNFARSALV--KPVTVNVGRAGAANLDVIQ 372 (588)
Q Consensus 300 ~~~lViDEah~l~~~~--~~~~i~~i~~---~~~~~~q~l~~SAT~~~~i~~~~~~~l~--~p~~i~~~~~~~~~~~~~~ 372 (588)
+.++|+||||+...|| |++..+.+.. .++ ...+|.+|||.+..++.-+-..|. ++..+. ......+...
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~y 461 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKY 461 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceE
Confidence 8899999999999998 6665554432 223 367999999999998877666554 444222 2234556666
Q ss_pred EeeehhhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007831 373 EVEYVKQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 373 ~~~~~~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVa 450 (588)
.|...........++..+.. ....+||||.++.+|+.++..|+..|+.+..||+||+..+|..+...|..++++|+||
T Consensus 462 eV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivA 541 (941)
T KOG0351|consen 462 EVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVA 541 (941)
T ss_pred EEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEE
Confidence 66655533333334444433 3568999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 451 TDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|-++++|||.|+|+.||||.+|+|++.|+|.+|||||+|....|++|+...
T Consensus 542 TVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 542 TVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred EeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 999999999999999999999999999999999999999999999999877
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.6e-36 Score=327.90 Aligned_cols=315 Identities=21% Similarity=0.254 Sum_probs=239.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|..+.+.+..|+ |+.++||+|||++|.+|++...+. |..++||+||++||.|.++.+..
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 54 79999999999888876 999999999999999999654443 44699999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCcccccc-
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLVD- 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~~- 313 (588)
++..+ ++++.+++|+.+...+...+ .++|+|+||++| .|++..+ ...++.+.++|+||+|+|+-
T Consensus 120 l~~~L------GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LID 191 (745)
T TIGR00963 120 VYRFL------GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILID 191 (745)
T ss_pred HhccC------CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHH
Confidence 98877 89999999998876554443 479999999999 8888765 35678999999999999862
Q ss_pred cCcH---------------HHHHHHHHhhhhc------------------------------------------------
Q 007831 314 LGFE---------------DDIREVFDHFKAQ------------------------------------------------ 330 (588)
Q Consensus 314 ~~~~---------------~~i~~i~~~~~~~------------------------------------------------ 330 (588)
.... .....+.+.+...
T Consensus 192 eaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~ 271 (745)
T TIGR00963 192 EARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALK 271 (745)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHH
Confidence 1000 0001111111000
Q ss_pred ---------------------------------------------------------------------ceeEEEecccc
Q 007831 331 ---------------------------------------------------------------------RQTLLFSATMP 341 (588)
Q Consensus 331 ---------------------------------------------------------------------~q~l~~SAT~~ 341 (588)
..+.+||+|..
T Consensus 272 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 351 (745)
T TIGR00963 272 AKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAK 351 (745)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcH
Confidence 12344555554
Q ss_pred hHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcC
Q 007831 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
.....|...+-..-+.+.. ..+....+ .....+.....|+..+++.+ ...+.|+||||+++..++.+++.|...|
T Consensus 352 te~~E~~~iY~l~vv~IPt-nkp~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 352 TEEEEFEKIYNLEVVVVPT-NRPVIRKD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred HHHHHHHHHhCCCEEEeCC-CCCeeeee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 4433333333222222211 11111111 11223445566777766655 4578899999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC-------cceEEecCCCCChhHHHHHhcccccCCCc
Q 007831 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD-------IQHVINYDMPAEIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~-------v~~VI~~~~p~s~~~y~qriGRagR~g~~ 491 (588)
+++..+|++ +.+|+..+..|+.+...|+|||++++||+||+. .-|||++++|.|...|.|++|||||.|.+
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 999999998 889999999999999999999999999999998 55999999999999999999999999999
Q ss_pred cEEEEEecCCC
Q 007831 492 GIATTFINKNQ 502 (588)
Q Consensus 492 g~~~~~~~~~~ 502 (588)
|.+..|++..+
T Consensus 508 G~s~~~ls~eD 518 (745)
T TIGR00963 508 GSSRFFLSLED 518 (745)
T ss_pred cceEEEEeccH
Confidence 99999999874
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.2e-36 Score=327.64 Aligned_cols=314 Identities=21% Similarity=0.244 Sum_probs=225.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+++|..+...+..| .|+.++||+|||++|++|++..++. |+.++||+|+++||.|+++.+..+..
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----------g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT-----------GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc-----------CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 5555555555555454 7999999999999999998766543 45699999999999999999999988
Q ss_pred cccccCCCCceEEEEEcCcc---hHHHHHHHhcCCcEEEeChHHH-HHHHHc------ccCCCCCcceeEecCcccccc-
Q 007831 245 PMRDAGYPDLRTLLCIGGVD---MRSQLEVVKRGVHIVVATPGRL-KDMLAK------KKMNLDNCRYLTLDEADRLVD- 313 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~---~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~------~~~~l~~~~~lViDEah~l~~- 313 (588)
.+ ++.+.+++++.. ..........+++|+++||++| .+.|.. ....++.+.++|+||||.|+-
T Consensus 137 ~L------GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD 210 (762)
T TIGR03714 137 WL------GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD 210 (762)
T ss_pred hc------CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc
Confidence 76 888888877622 2222333345799999999999 565532 234578899999999999852
Q ss_pred cC---------------cHHHHHHHHHhhhhc------------------------------------------------
Q 007831 314 LG---------------FEDDIREVFDHFKAQ------------------------------------------------ 330 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~~------------------------------------------------ 330 (588)
.. ....+..+...+...
T Consensus 211 eartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~ 290 (762)
T TIGR03714 211 SAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALR 290 (762)
T ss_pred cCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHH
Confidence 10 001111111111100
Q ss_pred ---------------------------------------------------------------------ceeEEEecccc
Q 007831 331 ---------------------------------------------------------------------RQTLLFSATMP 341 (588)
Q Consensus 331 ---------------------------------------------------------------------~q~l~~SAT~~ 341 (588)
..+.+||+|..
T Consensus 291 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 370 (762)
T TIGR03714 291 AHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK 370 (762)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh
Confidence 12345666654
Q ss_pred hHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcC
Q 007831 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
..-.+|...+-..-+.+.. ..+.... -.....+.....|+..++..+. ..+.|+||||+|+..++.++..|...|
T Consensus 371 ~~~~Ef~~iY~l~v~~IPt-~kp~~r~-d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 371 VAEKEFIETYSLSVVKIPT-NKPIIRI-DYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred hHHHHHHHHhCCCEEEcCC-CCCeeee-eCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC
Confidence 4444444333222111111 1111111 1122345566677777776654 357799999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC---------CcceEEecCCCCChhHHHHHhcccccCC
Q 007831 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP---------DIQHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip---------~v~~VI~~~~p~s~~~y~qriGRagR~g 489 (588)
+++..+||.+.+.++..+...++.| .|+|||++++||+||+ ++.+|++|++|....+ .||+|||||.|
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 9999999999999988777777666 7999999999999999 9999999999988777 99999999999
Q ss_pred CccEEEEEecCCC
Q 007831 490 KTGIATTFINKNQ 502 (588)
Q Consensus 490 ~~g~~~~~~~~~~ 502 (588)
.+|.+++|++..+
T Consensus 526 ~~G~s~~~is~eD 538 (762)
T TIGR03714 526 DPGSSQFFVSLED 538 (762)
T ss_pred CceeEEEEEccch
Confidence 9999999998763
No 73
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=293.10 Aligned_cols=331 Identities=22% Similarity=0.355 Sum_probs=262.5
Q ss_pred CCCCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007831 145 FKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 145 f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
-++++++.+..+.|++. ...+++|.|..+|.+.+.|.|++++.|||.||++||.||+|.. ...+|
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------------dg~al 138 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------------DGFAL 138 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------------CCceE
Confidence 35778888988888877 7889999999999999999999999999999999999999853 45799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-------hcCCcEEEeChHHHHH---HHHc-
Q 007831 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-------KRGVHIVVATPGRLKD---MLAK- 292 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-------~~~~~IvV~Tp~~L~~---~l~~- 292 (588)
||||...|...+.-.++.+ ++....+...++..+ ...+ .....+++.||+++.. ++.+
T Consensus 139 vi~plislmedqil~lkql----------gi~as~lnansske~-~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl 207 (695)
T KOG0353|consen 139 VICPLISLMEDQILQLKQL----------GIDASMLNANSSKEE-AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL 207 (695)
T ss_pred eechhHHHHHHHHHHHHHh----------CcchhhccCcccHHH-HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH
Confidence 9999999999888888887 565555555444322 2221 2246899999998842 2222
Q ss_pred -ccCCCCCcceeEecCcccccccC--cHHHHHH--HHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcc
Q 007831 293 -KKMNLDNCRYLTLDEADRLVDLG--FEDDIRE--VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN 367 (588)
Q Consensus 293 -~~~~l~~~~~lViDEah~l~~~~--~~~~i~~--i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~ 367 (588)
+.+....+.++.+||+|++..|| |+++... ++++--+...++++|||.++.+.+.++..+.....+. .+.+...
T Consensus 208 eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~t-f~a~fnr 286 (695)
T KOG0353|consen 208 EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFT-FRAGFNR 286 (695)
T ss_pred HHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhe-eecccCC
Confidence 34556678999999999999998 4444332 2322223456999999999998888887765432222 2333444
Q ss_pred cceEEEeeeh--hhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 007831 368 LDVIQEVEYV--KQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 368 ~~~~~~~~~~--~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g 443 (588)
+++...+... ..++-+..+...+.. .+...||||-+.++|+.++..|+..|+.+..||..|.+.+|.-+.+.|..|
T Consensus 287 ~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ 366 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG 366 (695)
T ss_pred CCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc
Confidence 5555555443 244445555555554 356789999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHH-------------------------------------------
Q 007831 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH------------------------------------------- 480 (588)
Q Consensus 444 ~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~q------------------------------------------- 480 (588)
++.|+|||-++++|||-|+|++||+..+|+|+++|.|
T Consensus 367 eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsek 446 (695)
T KOG0353|consen 367 EIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEK 446 (695)
T ss_pred ceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecch
Confidence 9999999999999999999999999999999999999
Q ss_pred HhcccccCCCccEEEEEecCC
Q 007831 481 RIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 481 riGRagR~g~~g~~~~~~~~~ 501 (588)
..||+||+|.+..|+.++.-.
T Consensus 447 esgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 447 ESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hccccccCCCcccEEEEechH
Confidence 679999999999999998654
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6e-35 Score=333.90 Aligned_cols=321 Identities=25% Similarity=0.354 Sum_probs=238.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...|+++|.+++..++.+ |+++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.+.++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~----------~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH----------KKGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH----------hCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 457899999999998887 9999999999999999998887652 24678999999999999999999988
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007831 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
+.. +..++..++|+.+..... .+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+..
T Consensus 82 ~~~------~~~~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~ 154 (773)
T PRK13766 82 LNI------PEEKIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAE 154 (773)
T ss_pred hCC------CCceEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHH
Confidence 632 245778888887765543 3444579999999999888777788889999999999999876543344444
Q ss_pred HHHhhhhcceeEEEecccchH---HHHHHHHhcCCCeEEE--------------------ecC-----------------
Q 007831 323 VFDHFKAQRQTLLFSATMPTK---IQNFARSALVKPVTVN--------------------VGR----------------- 362 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~---i~~~~~~~l~~p~~i~--------------------~~~----------------- 362 (588)
.+.......++++||||+... +..+...+....+.+. +..
T Consensus 155 ~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 155 RYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred HHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 444444556799999998422 2222222211111000 000
Q ss_pred -------CCCc---c--cc----------eEEEe------------------------------------ee--------
Q 007831 363 -------AGAA---N--LD----------VIQEV------------------------------------EY-------- 376 (588)
Q Consensus 363 -------~~~~---~--~~----------~~~~~------------------------------------~~-------- 376 (588)
.+.. . .. +.... .+
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 0000 0 00 00000 00
Q ss_pred ----------------------------hhhHHHHHHHHHHhh-----cCCCCEEEEeCccccHHHHHHHHHHcCCcEEE
Q 007831 377 ----------------------------VKQEAKIVYLLECLQ-----KTPPPVLIFCENKADVDDIHEYLLLKGVEAVA 423 (588)
Q Consensus 377 ----------------------------~~~~~k~~~ll~~l~-----~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ 423 (588)
.....|+..|.+.+. ..+.++||||+++..|+.++++|...|+.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 000123333333332 24679999999999999999999999999999
Q ss_pred EeCC--------CCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEE
Q 007831 424 VHGG--------KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495 (588)
Q Consensus 424 ihg~--------~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~ 495 (588)
+||. +++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.++
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~ 473 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVV 473 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEE
Confidence 9986 999999999999999999999999999999999999999999999999999999999999865 7888
Q ss_pred EEecCCC
Q 007831 496 TFINKNQ 502 (588)
Q Consensus 496 ~~~~~~~ 502 (588)
+++..+.
T Consensus 474 ~l~~~~t 480 (773)
T PRK13766 474 VLIAKGT 480 (773)
T ss_pred EEEeCCC
Confidence 8887653
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.4e-35 Score=302.84 Aligned_cols=293 Identities=18% Similarity=0.202 Sum_probs=205.4
Q ss_pred HHHHHHHHHhcCCC--EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007831 169 IQVQGLPVVLSGRD--MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 169 ~Q~~~i~~il~g~d--vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
+|.++++.+..+.+ ++++||||||||++|++|++. .+.+++|++|+++|+.|+++.+.+++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~--------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH--------------GENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH--------------cCCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999998874 788999999999999999884 13358999999999999999999998644
Q ss_pred cccCCCCceEEEEEcCcchH--HHH------------------HHHhcCCcEEEeChHHHHHHHHcc----c----CCCC
Q 007831 247 RDAGYPDLRTLLCIGGVDMR--SQL------------------EVVKRGVHIVVATPGRLKDMLAKK----K----MNLD 298 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~--~~~------------------~~l~~~~~IvV~Tp~~L~~~l~~~----~----~~l~ 298 (588)
.. ..+..+..+.|.+... ... ......++|+++||+.|..++... . ..+.
T Consensus 67 ~~--~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 67 KP--ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred CC--CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 21 1245566666642211 000 011235789999999996655431 1 1257
Q ss_pred CcceeEecCcccccccCc-----HHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh--cCCCeEEEecCC--------
Q 007831 299 NCRYLTLDEADRLVDLGF-----EDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA--LVKPVTVNVGRA-------- 363 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~-----~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~--l~~p~~i~~~~~-------- 363 (588)
++++|||||+|.+..++. ......++.......+++++|||+++.+...+... +..++....+..
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~ 224 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPE 224 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChh
Confidence 899999999999875432 12233344444445789999999999888887765 455544333330
Q ss_pred ---CCc-------ccceEEEeeeh--hhHHHHHHHHHHh----h-cCCCCEEEEeCccccHHHHHHHHHHcC--CcEEEE
Q 007831 364 ---GAA-------NLDVIQEVEYV--KQEAKIVYLLECL----Q-KTPPPVLIFCENKADVDDIHEYLLLKG--VEAVAV 424 (588)
Q Consensus 364 ---~~~-------~~~~~~~~~~~--~~~~k~~~ll~~l----~-~~~~~viIF~~s~~~~~~l~~~L~~~g--~~~~~i 424 (588)
... ...+...+... .....+..+++.+ . ..+.++||||+++..++.+++.|+..+ +.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l 304 (357)
T TIGR03158 225 LEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRI 304 (357)
T ss_pred hhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEee
Confidence 000 01232222221 1122233333333 2 245689999999999999999999865 578889
Q ss_pred eCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccc
Q 007831 425 HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG 486 (588)
Q Consensus 425 hg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRag 486 (588)
||.+++.+|.++ ++.+|||||+++++|||++.+ +|| ++ |.+++.|+||+||+|
T Consensus 305 ~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999999998754 478999999999999999987 566 45 899999999999997
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.3e-34 Score=301.57 Aligned_cols=371 Identities=21% Similarity=0.274 Sum_probs=285.2
Q ss_pred CHHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007831 151 PEPILKKL-KAKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 151 ~~~l~~~l-~~~g~~~p~~~Q~~~i~~il~g------~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
...+++.+ ....| +||..|.+++..|... .+-++++..|||||++++++++..+ ..|.++.
T Consensus 248 ~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai-----------~~G~Q~A 315 (677)
T COG1200 248 NGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI-----------EAGYQAA 315 (677)
T ss_pred cHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH-----------HcCCeeE
Confidence 34445544 44466 7999999999999843 3669999999999999999999876 2588999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHhcC-CcEEEeChHHHHHHHHcccCCCCC
Q 007831 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVKRG-VHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~ 299 (588)
+++||--||.|.++.+.+++.++ ++++..++|........ ..+..| .+|||+| +.|.+..+.+++
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~------~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~ 384 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPL------GIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHN 384 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhc------CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecc
Confidence 99999999999999999999987 89999999977655443 444555 9999999 888899999999
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhh-cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh
Q 007831 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKA-QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK 378 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~ 378 (588)
+.++|+||-|| |+-.-+..+..-.. .+.+++||||+-|.. ++-....+-.+-.+...+.....+...+....
T Consensus 385 LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i~~~ 457 (677)
T COG1200 385 LGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVIPHE 457 (677)
T ss_pred eeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEeccc
Confidence 99999999999 77888888888777 688999999997764 34444444333333444444455555555544
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCcccc--------HHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007831 379 QEAKIVYLLECLQKTPPPVLIFCENKAD--------VDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s~~~--------~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vL 448 (588)
...++...+..-...+.++.+.|+-+++ +..+++.|... ++.+..+||.|+..++++++.+|++|+.+||
T Consensus 458 ~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 458 RRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 4444444433333378899999998765 45666777643 6679999999999999999999999999999
Q ss_pred EEcCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhh
Q 007831 449 VATDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~-s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 527 (588)
|||.+.+.|+|+|+++++|+.+.-. -.++..|-.||+||.+..+.|+.++.+...+..-..| ..+.+
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL------------~im~~ 605 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRL------------KIMRE 605 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHH------------HHHHh
Confidence 9999999999999999999888654 6889999999999999999999999877322211111 12222
Q ss_pred ccCchh---hHHHHhhccCCCCCccCCCCCcccccCcch
Q 007831 528 LNDPME---DVDAITNASGVKGCAYCGGLGHRIRDCPKL 563 (588)
Q Consensus 528 l~~~~~---~~~~~~~~~~~~~c~~cg~~g~~~~~~~~~ 563 (588)
-.|.+. ..-+++..|...|-.+.|..++++++.-.-
T Consensus 606 t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f~~Adl~~D 644 (677)
T COG1200 606 TTDGFVIAEEDLKLRGPGELLGTRQSGLPEFRVADLVRD 644 (677)
T ss_pred cCCcceehhhhHhccCCccccCCcccCCcceEEeeHHhh
Confidence 233322 223566778889999999999999887654
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=311.32 Aligned_cols=326 Identities=21% Similarity=0.275 Sum_probs=245.4
Q ss_pred CCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
+|..+..+|..++|.+. +..|+|+|||||||||.+|+|.+|+.+.+.+. .-....++-+++||+|+++||.++++.+.
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~-~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE-QGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc-ccccccCCceEEEEechHHHHHHHHHHHh
Confidence 67889999999999998 67899999999999999999999988775322 12223457789999999999999999998
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC----CCCCcceeEecCcccccccCc
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM----NLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~----~l~~~~~lViDEah~l~~~~~ 316 (588)
+-+.++ ++.|..++|++...... + ..++|+|+||+++ |.+.++.. .++.+++||+||+|.+.+. .
T Consensus 186 kkl~~~------gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-R 254 (1230)
T KOG0952|consen 186 KKLAPL------GISVRELTGDTQLTKTE--I-ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-R 254 (1230)
T ss_pred hhcccc------cceEEEecCcchhhHHH--H-HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-c
Confidence 887776 89999999998765443 2 2489999999999 88877543 3677899999999999875 5
Q ss_pred HHHHHHHHHhhh-------hcceeEEEecccchHHHHHHHHhcCCCe-EEEecCCCCcccceEEEeeehh----------
Q 007831 317 EDDIREVFDHFK-------AQRQTLLFSATMPTKIQNFARSALVKPV-TVNVGRAGAANLDVIQEVEYVK---------- 378 (588)
Q Consensus 317 ~~~i~~i~~~~~-------~~~q~l~~SAT~~~~i~~~~~~~l~~p~-~i~~~~~~~~~~~~~~~~~~~~---------- 378 (588)
++.++.|+.+.. ...++|++|||+|+- .+.+..+-.+|. -+...........+.+.+.-.+
T Consensus 255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~ 333 (1230)
T KOG0952|consen 255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKN 333 (1230)
T ss_pred cchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhh
Confidence 577777776654 345799999999975 345544444432 1111111122233333332211
Q ss_pred -hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC-----------------------CcEEEEeCCCCHHHHH
Q 007831 379 -QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG-----------------------VEAVAVHGGKDQEERE 434 (588)
Q Consensus 379 -~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-----------------------~~~~~ihg~~~~~~R~ 434 (588)
.+.....+++.++ .+.+++|||.+++.....++.|...+ .....+|+||...+|.
T Consensus 334 ~d~~~~~kv~e~~~-~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 334 IDEVCYDKVVEFLQ-EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 1122333444443 46799999999999999999886531 2356789999999999
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----ecCCCC------ChhHHHHHhcccccC--CCccEEEEEecCC
Q 007831 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----NYDMPA------EIENYVHRIGRTGRC--GKTGIATTFINKN 501 (588)
Q Consensus 435 ~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI----~~~~p~------s~~~y~qriGRagR~--g~~g~~~~~~~~~ 501 (588)
.+.+.|..|.++||+||..+++|+|+|+--++| .||.-. .+.+.+|.+|||||. +..|.++++.+.+
T Consensus 413 l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 413 LVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 999999999999999999999999999866666 333332 577889999999996 5779888888766
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=299.24 Aligned_cols=318 Identities=25% Similarity=0.307 Sum_probs=224.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...++.+|.+....+| |+|+|+++|||+|||.++...++.++-+. +..++||++||+-|+.|+...+..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---------p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---------PKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---------CcceEEEeeCCchHHHHHHHHHhhc
Confidence 3578999999999999 99999999999999999999888887552 4578999999999999999877777
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeEecCcccccccCcHHHHH
Q 007831 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
+.+ ..+....||.........+-...+|+|+||+.|.+.|..... .|+.+.++||||||+-....-...+.
T Consensus 130 ~~~--------~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 130 LIP--------YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred cCc--------ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHH
Confidence 542 345555666444433344555679999999999988876533 36899999999999987765444444
Q ss_pred -HHHHhhhhcceeEEEecccchHHHHHH---HHhc----------------------CCCeEE-----------------
Q 007831 322 -EVFDHFKAQRQTLLFSATMPTKIQNFA---RSAL----------------------VKPVTV----------------- 358 (588)
Q Consensus 322 -~i~~~~~~~~q~l~~SAT~~~~i~~~~---~~~l----------------------~~p~~i----------------- 358 (588)
..+..-....|+|++|||+..+..... ..+. ..|+.+
T Consensus 202 r~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 555444444499999999854322210 0000 000000
Q ss_pred -------------E------------ecCCCCcccceEEE--e------------------e---------------ehh
Q 007831 359 -------------N------------VGRAGAANLDVIQE--V------------------E---------------YVK 378 (588)
Q Consensus 359 -------------~------------~~~~~~~~~~~~~~--~------------------~---------------~~~ 378 (588)
. .......+..-.+. + . ...
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 0 00000000000000 0 0 000
Q ss_pred -------------------------------hHHHHHHHHHHhh-----cCCCCEEEEeCccccHHHHHHHHHH---cCC
Q 007831 379 -------------------------------QEAKIVYLLECLQ-----KTPPPVLIFCENKADVDDIHEYLLL---KGV 419 (588)
Q Consensus 379 -------------------------------~~~k~~~ll~~l~-----~~~~~viIF~~s~~~~~~l~~~L~~---~g~ 419 (588)
...++..+.+.+. ....++||||.++..|+.|..+|.. .|+
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 0112222222222 1245899999999999999999973 234
Q ss_pred cEEEEe--------CCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCc
Q 007831 420 EAVAVH--------GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 420 ~~~~ih--------g~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~ 491 (588)
.+..+- .+|+|.++.++++.|++|+++|||||+++++||||+.+++||.||.-.|+...+||.|| ||+ +.
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~n 519 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RN 519 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cC
Confidence 444433 48999999999999999999999999999999999999999999999999999999999 998 56
Q ss_pred cEEEEEecC
Q 007831 492 GIATTFINK 500 (588)
Q Consensus 492 g~~~~~~~~ 500 (588)
|.++.+.+.
T Consensus 520 s~~vll~t~ 528 (746)
T KOG0354|consen 520 SKCVLLTTG 528 (746)
T ss_pred CeEEEEEcc
Confidence 777777773
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.8e-33 Score=301.32 Aligned_cols=318 Identities=20% Similarity=0.242 Sum_probs=217.0
Q ss_pred CCCcHHHHHHHHHHh-cC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVL-SG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il-~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..++|+|.+++..++ +| +..++++|||+|||++.+..+.. + +.++|||||+..|+.||.+.+.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 468999999999988 44 47899999999999997655432 1 2458999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------ccCCCCCcceeEecCccccc
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--------KKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~--------~~~~l~~~~~lViDEah~l~ 312 (588)
+|+.. +...+..++|+.... ......|+|+|+..+.....+ ..+.-..+++||+||||++.
T Consensus 320 ~~~~l------~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp 388 (732)
T TIGR00603 320 MWSTI------DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP 388 (732)
T ss_pred HhcCC------CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc
Confidence 98531 245566666653221 112368999999876432111 11223468899999999985
Q ss_pred ccCcHHHHHHHHHhhhhcceeEEEecccchHHHH--HHHHhcCCCeEEEecCCCC------cccceEEE-ee--------
Q 007831 313 DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN--FARSALVKPVTVNVGRAGA------ANLDVIQE-VE-------- 375 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~--~~~~~l~~p~~i~~~~~~~------~~~~~~~~-~~-------- 375 (588)
. ..++.++..+... ..+++|||+...-.. .+. .+..|.......... +....... +.
T Consensus 389 A----~~fr~il~~l~a~-~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 389 A----AMFRRVLTIVQAH-CKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred H----HHHHHHHHhcCcC-cEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 4 4566677666543 479999999642111 111 222333322211100 00000000 00
Q ss_pred ------------ehhhHHHHHH---HHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Q 007831 376 ------------YVKQEAKIVY---LLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440 (588)
Q Consensus 376 ------------~~~~~~k~~~---ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f 440 (588)
+.....|+.. ++......+.++||||.+...++.++..| .+..+||.+++.+|..+++.|
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHH
Confidence 0011122222 22222235679999999999888888877 356799999999999999999
Q ss_pred hcC-CcEEEEEcCccccCCCCCCcceEEecCCC-CChhHHHHHhcccccCCCccEE-------EEEecCCCCh-hHHHHH
Q 007831 441 KAG-KKDVLVATDVASKGLDFPDIQHVINYDMP-AEIENYVHRIGRTGRCGKTGIA-------TTFINKNQSE-TTLLDL 510 (588)
Q Consensus 441 ~~g-~~~vLVaT~~~~~GlDip~v~~VI~~~~p-~s~~~y~qriGRagR~g~~g~~-------~~~~~~~~~~-~~~~~l 510 (588)
++| .+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ ++|++.+..+ .+...-
T Consensus 538 r~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 538 QHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred HhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 975 78999999999999999999999999998 4999999999999999876665 8888877433 334444
Q ss_pred HHHHHHh
Q 007831 511 KHLLQEA 517 (588)
Q Consensus 511 ~~~l~~~ 517 (588)
..+|.+.
T Consensus 618 q~fl~~q 624 (732)
T TIGR00603 618 QRFLVDQ 624 (732)
T ss_pred HHHHHHC
Confidence 5555543
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.3e-32 Score=306.25 Aligned_cols=396 Identities=19% Similarity=0.221 Sum_probs=244.8
Q ss_pred CCCcHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~--g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
..|.|+|..+.-.++. ...+++...+|.|||+-+.+.+-..+.. +...++|||||+ .|+.||..++.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~---------g~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT---------GRAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc---------CCCCcEEEEcCH-HHHHHHHHHHHH
Confidence 4699999999877764 3579999999999998886655444332 344579999998 899999999876
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHH--HHhcCCcEEEeChHHHHHHHH-cccCCCCCcceeEecCcccccccC--c
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLE--VVKRGVHIVVATPGRLKDMLA-KKKMNLDNCRYLTLDEADRLVDLG--F 316 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IvV~Tp~~L~~~l~-~~~~~l~~~~~lViDEah~l~~~~--~ 316 (588)
.+ ++...++.++........ .-....+++|+|.+.+...-. ...+.-..+++|||||||++.... -
T Consensus 221 kF---------~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~ 291 (956)
T PRK04914 221 RF---------NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAP 291 (956)
T ss_pred Hh---------CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCc
Confidence 54 444444433321100000 000135899999977753111 112223468999999999997311 1
Q ss_pred HHHHHHHHHhh-hhcceeEEEecccch-HHH------------------HHH-------------H--------------
Q 007831 317 EDDIREVFDHF-KAQRQTLLFSATMPT-KIQ------------------NFA-------------R-------------- 349 (588)
Q Consensus 317 ~~~i~~i~~~~-~~~~q~l~~SAT~~~-~i~------------------~~~-------------~-------------- 349 (588)
..... .+..+ .....++++||||-. ... .|. .
T Consensus 292 s~~y~-~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~ 370 (956)
T PRK04914 292 SREYQ-VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALN 370 (956)
T ss_pred CHHHH-HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHH
Confidence 11222 22222 234568999999831 000 010 0
Q ss_pred ---HhcCC-----------------------------------CeEEEecCCCCc--ccceEEEee--------------
Q 007831 350 ---SALVK-----------------------------------PVTVNVGRAGAA--NLDVIQEVE-------------- 375 (588)
Q Consensus 350 ---~~l~~-----------------------------------p~~i~~~~~~~~--~~~~~~~~~-------------- 375 (588)
.++.. .+.+...+.... .......+.
T Consensus 371 ~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~ 450 (956)
T PRK04914 371 ALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVS 450 (956)
T ss_pred HHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHh
Confidence 00000 000000000000 000000000
Q ss_pred -----------------------ehhhHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHH-HcCCcEEEEeCCCCH
Q 007831 376 -----------------------YVKQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLL-LKGVEAVAVHGGKDQ 430 (588)
Q Consensus 376 -----------------------~~~~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~-~~g~~~~~ihg~~~~ 430 (588)
+...+.|+..++..+... +.++||||+++..+..+++.|. ..|+.+..+||+|++
T Consensus 451 ~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~ 530 (956)
T PRK04914 451 LEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSI 530 (956)
T ss_pred HHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCH
Confidence 011123555666666543 6799999999999999999994 679999999999999
Q ss_pred HHHHHHHHHHhcC--CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHH
Q 007831 431 EEREYAISSFKAG--KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 508 (588)
Q Consensus 431 ~~R~~~~~~f~~g--~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~ 508 (588)
.+|.++++.|+++ ..+|||||+++++|+|++.+++|||||+|+++..|.||+||+||.|+++.+.+++... ......
T Consensus 531 ~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~-~~t~~e 609 (956)
T PRK04914 531 IERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL-EGTAQE 609 (956)
T ss_pred HHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC-CCCHHH
Confidence 9999999999984 6999999999999999999999999999999999999999999999999887777654 333445
Q ss_pred HHHHHHHHhc----ccCchHHhhccCch-hhHHHHhhccCCCCCccCCCCCcccccCcchHHHHHHHhhcCCCCccCCCC
Q 007831 509 DLKHLLQEAK----QRIPPVLAELNDPM-EDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 583 (588)
Q Consensus 509 ~l~~~l~~~~----~~~p~~l~~l~~~~-~~~~~~~~~~~~~~c~~cg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (588)
.+..++.+.. +.+|.. ..+.+.. ........ +...-.++-.-+..|.+..++-..+...||+..+.-++
T Consensus 610 ~i~~~~~~~l~ife~~~~~~-~~v~~~~~~~l~~~l~-----~~~~~~~~~~li~~~~~~~~~l~~~le~gRdrLlE~ns 683 (956)
T PRK04914 610 RLFRWYHEGLNAFEHTCPTG-RALYDEFGDELIPYLA-----SPDDTDGLDELIAETREQHEALKAQLEQGRDRLLELNS 683 (956)
T ss_pred HHHHHHhhhcCceeccCCCH-HHHHHHHHHHHHHHHh-----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555554432 334432 2221111 11111111 00011124455666666666666667777766655444
Q ss_pred CCc
Q 007831 584 YRG 586 (588)
Q Consensus 584 ~~~ 586 (588)
.+|
T Consensus 684 ~~~ 686 (956)
T PRK04914 684 CGG 686 (956)
T ss_pred CCh
Confidence 443
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4.2e-31 Score=293.72 Aligned_cols=309 Identities=18% Similarity=0.236 Sum_probs=218.7
Q ss_pred CCCcHHHHHHHHHHhcC---CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVLSG---RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g---~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..||+.|.++++.++++ +++++.|+||||||.+|+.++...+. .|.++|||+||++|+.|+++.++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----------~g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----------QGKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHHHHHHHHHH
Confidence 36899999999999974 78999999999999999887765542 36789999999999999999998
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCc
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~ 316 (588)
+.+ +.++..++|+.+..++... +. ..++|+|+|++.+. ..+.++++|||||+|....+..
T Consensus 212 ~~f---------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~ 275 (679)
T PRK05580 212 ARF---------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQ 275 (679)
T ss_pred HHh---------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccC
Confidence 864 5678899999877655433 32 35799999998763 4578899999999998664321
Q ss_pred ---HHHHHH--HHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCC-CCcccceEEEeeehh---------hHH
Q 007831 317 ---EDDIRE--VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA-GAANLDVIQEVEYVK---------QEA 381 (588)
Q Consensus 317 ---~~~i~~--i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~-~~~~~~~~~~~~~~~---------~~~ 381 (588)
.-..+. ++.......+++++|||++......+..- ....+..... ..........+.... -..
T Consensus 276 ~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 276 EGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred cCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 111222 23334567899999999886655444321 1111111111 011111111111100 001
Q ss_pred HHHHHHHHhhcCCCCEEEEeCcc---------------------------------------------------------
Q 007831 382 KIVYLLECLQKTPPPVLIFCENK--------------------------------------------------------- 404 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~--------------------------------------------------------- 404 (588)
.+...+....+.+.++|||+|++
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 12222222234566899988752
Q ss_pred ---ccHHHHHHHHHHc--CCcEEEEeCCCC--HHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE--ecCCCCC-
Q 007831 405 ---ADVDDIHEYLLLK--GVEAVAVHGGKD--QEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI--NYDMPAE- 474 (588)
Q Consensus 405 ---~~~~~l~~~L~~~--g~~~~~ihg~~~--~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI--~~~~p~s- 474 (588)
..++.+++.|... +.++..+|+++. ..++..+++.|++|+.+|||+|+++++|+|+|+|++|+ +.|.+.+
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 2467888888776 889999999986 46789999999999999999999999999999999985 4454433
Q ss_pred ---------hhHHHHHhcccccCCCccEEEEEecCC
Q 007831 475 ---------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 ---------~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
...|+|++||+||.++.|.+++.....
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 357999999999999999998776543
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.3e-32 Score=309.08 Aligned_cols=294 Identities=22% Similarity=0.325 Sum_probs=205.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC--EEEEEcCC----HHHHHHHHHHHHHHh
Q 007831 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP--FCLIVCPS----RELARQTYEVVEQFL 243 (588)
Q Consensus 170 Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~--~~Lil~Pt----r~La~Q~~~~~~~~~ 243 (588)
-.+.+..+.+++.+|++|+||||||. ++|.+.... +.+. .+++.-|. ++||.++.+++..-+
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~----------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL----------GRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc----------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 34455566677778888999999997 688543321 1222 33333464 577777777766422
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcc-cccccCcHHH-HH
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD-RLVDLGFEDD-IR 321 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah-~l~~~~~~~~-i~ 321 (588)
+-.+++-+. ..++ ...+++|+|+|||+|++.+.... .++.+++||||||| ++++.+|... +.
T Consensus 147 ---------G~~VGY~vr---f~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk 210 (1294)
T PRK11131 147 ---------GGCVGYKVR---FNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLK 210 (1294)
T ss_pred ---------cceeceeec---Cccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHH
Confidence 111222111 1111 12468999999999999987654 48999999999999 6888887642 33
Q ss_pred HHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh------hHHHHHHHHHHh----h
Q 007831 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK------QEAKIVYLLECL----Q 391 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~k~~~ll~~l----~ 391 (588)
.++.. .++.|+|+||||++.. .+.+.+...|+ +.+.... ..+...+.... ..+.+..++..+ .
T Consensus 211 ~lL~~-rpdlKvILmSATid~e--~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~ 283 (1294)
T PRK11131 211 ELLPR-RPDLKVIITSATIDPE--RFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGR 283 (1294)
T ss_pred Hhhhc-CCCceEEEeeCCCCHH--HHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhc
Confidence 33332 2467999999999754 56665555554 4443221 12222222221 122333333322 2
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCc---EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLKGVE---AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~---~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~ 468 (588)
...+.+||||++..+++.+++.|...++. +..+||++++++|..+++. .|..+|||||+++++|||+|+|++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 35678999999999999999999988765 6789999999999999876 578899999999999999999999999
Q ss_pred cC---------------CC---CChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 469 YD---------------MP---AEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 469 ~~---------------~p---~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++ +| .|.++|.||+|||||. ..|.|+.++++.
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 86 33 3568999999999999 799999999865
No 83
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=1.1e-30 Score=250.74 Aligned_cols=202 Identities=45% Similarity=0.773 Sum_probs=184.0
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE
Q 007831 145 FKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI 224 (588)
Q Consensus 145 f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li 224 (588)
|+++++++.+.+.|.+.|+..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... ...++++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------~~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP------KKDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc------ccCCceEEE
Confidence 67899999999999999999999999999999999999999999999999999999999887642 125789999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeE
Q 007831 225 VCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLT 304 (588)
Q Consensus 225 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lV 304 (588)
++|+++|+.|+...+..+.... ++++..++|+.+.......+..+++|+|+||++|.+++.+....+.+++++|
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT------NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLV 148 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEE
Confidence 9999999999999999986542 7888999999888777777777899999999999999988888889999999
Q ss_pred ecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEE
Q 007831 305 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTV 358 (588)
Q Consensus 305 iDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i 358 (588)
+||+|.+.+.++...+..+++.++..+|++++|||+++.+..++..++.+|+.+
T Consensus 149 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 149 LDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999899999999999999999999999988765
No 84
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=284.58 Aligned_cols=382 Identities=20% Similarity=0.208 Sum_probs=266.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007831 149 RFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 149 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
.+|++-..++. |...+.++|....+.++.+ .++++|||||+|||.++++-+|+.+-......-...-...+++|++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46666666664 4566999999999999965 69999999999999999999998876543211111122347899999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCC---CCCcceeE
Q 007831 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMN---LDNCRYLT 304 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~---l~~~~~lV 304 (588)
.++|++.+...|.+.+.++ +++|.-.+|+.....+. ..+..|+|+||+.+ |.+.++.-+ .+-++++|
T Consensus 373 mKaLvqE~VgsfSkRla~~------GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlI 442 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL------GITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLI 442 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc------CcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHh
Confidence 9999999999999988877 99999999986643221 13579999999999 888876432 34578999
Q ss_pred ecCcccccccCcHHHHHHHHHhhh-------hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeeh
Q 007831 305 LDEADRLVDLGFEDDIREVFDHFK-------AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 305 iDEah~l~~~~~~~~i~~i~~~~~-------~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 377 (588)
+||.|.+.|. .++.+..|..... ..++++++|||+|+-. +.+.-+..++.-+...........+.|.+.-+
T Consensus 443 IDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi 520 (1674)
T KOG0951|consen 443 IDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGI 520 (1674)
T ss_pred hhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEecc
Confidence 9999998664 4466666655442 3568999999999863 33332233332222222233444555555443
Q ss_pred hh---HHH--------HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-----------------------------
Q 007831 378 KQ---EAK--------IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK----------------------------- 417 (588)
Q Consensus 378 ~~---~~k--------~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~----------------------------- 417 (588)
.. ..+ ...+++... .++||||+.++++.-+.|+.++..
T Consensus 521 ~ek~~~~~~qamNe~~yeKVm~~ag--k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~k 598 (1674)
T KOG0951|consen 521 TEKKPLKRFQAMNEACYEKVLEHAG--KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAK 598 (1674)
T ss_pred ccCCchHHHHHHHHHHHHHHHHhCC--CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhccc
Confidence 32 112 222333333 379999999999988888877521
Q ss_pred --------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----ecCC------CCChhHHH
Q 007831 418 --------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----NYDM------PAEIENYV 479 (588)
Q Consensus 418 --------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI----~~~~------p~s~~~y~ 479 (588)
.+.++++|+||+..+|..+.+.|++|.++|||+|..+++|+|+|+-.++| .|++ +.++.+.+
T Consensus 599 n~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~ 678 (1674)
T KOG0951|consen 599 NPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVM 678 (1674)
T ss_pred ChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHH
Confidence 34578899999999999999999999999999999999999999988777 4543 34799999
Q ss_pred HHhcccccCCCcc--EEEEEecCCCChhHHHHHHHHHHHhcccCch---HHhhccCchhhHHHHhhccCCCCCccCCCCC
Q 007831 480 HRIGRTGRCGKTG--IATTFINKNQSETTLLDLKHLLQEAKQRIPP---VLAELNDPMEDVDAITNASGVKGCAYCGGLG 554 (588)
Q Consensus 480 qriGRagR~g~~g--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~---~l~~l~~~~~~~~~~~~~~~~~~c~~cg~~g 554 (588)
||.|||||.+..+ ..+++...+ ++...+...+|.+|- ++..+.+.... -.-.|-...-..|.|+|
T Consensus 679 qmlgragrp~~D~~gegiiit~~s-------e~qyyls~mn~qLpiesq~~~rl~d~lna---eiv~Gv~~~~d~~~wl~ 748 (1674)
T KOG0951|consen 679 QMLGRAGRPQYDTCGEGIIITDHS-------ELQYYLSLMNQQLPIESQFVSRLADCLNA---EIVLGVRSARDAVDWLG 748 (1674)
T ss_pred HHHhhcCCCccCcCCceeeccCch-------HhhhhHHhhhhcCCChHHHHHHhhhhhhh---hhhcchhhHHHHHhhhc
Confidence 9999999987554 444433333 566667777777763 34444443221 11122222334567777
Q ss_pred cc
Q 007831 555 HR 556 (588)
Q Consensus 555 ~~ 556 (588)
|.
T Consensus 749 yT 750 (1674)
T KOG0951|consen 749 YT 750 (1674)
T ss_pred ce
Confidence 63
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=6.1e-29 Score=278.34 Aligned_cols=310 Identities=21% Similarity=0.238 Sum_probs=209.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...|+|+|..+........-+|+.||||+|||.++++.+...+.. +....++|..||+++++|+++++.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~---------~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ---------GLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 348999999886554456678999999999999988776643322 23568999999999999999999987
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHH---------------------HHHhc------CCcEEEeChHHHHHHHHc-cc
Q 007831 243 LTPMRDAGYPDLRTLLCIGGVDMRSQL---------------------EVVKR------GVHIVVATPGRLKDMLAK-KK 294 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~---------------------~~l~~------~~~IvV~Tp~~L~~~l~~-~~ 294 (588)
...+ ++...+.+.+|........ ..+.. -.+|+|||+.+++..+.. +.
T Consensus 355 ~~~~----f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh 430 (878)
T PRK09694 355 ASKL----FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH 430 (878)
T ss_pred HHHh----cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch
Confidence 6543 2234567777765322110 11111 168999999998765544 22
Q ss_pred CCCCCc----ceeEecCcccccccCcHHHHHHHHHhhh-hcceeEEEecccchHHHHHHHHhcCC----------CeEEE
Q 007831 295 MNLDNC----RYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVK----------PVTVN 359 (588)
Q Consensus 295 ~~l~~~----~~lViDEah~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~----------p~~i~ 359 (588)
..++.+ ++|||||+|.+-.. ....+..+++.+. ....+|+||||+|....+.+...+.. |....
T Consensus 431 ~~lR~~~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~ 509 (878)
T PRK09694 431 RFIRGFGLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITW 509 (878)
T ss_pred HHHHHHhhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccc
Confidence 223333 48999999997432 2234455555442 34569999999999876544332211 11000
Q ss_pred ecCCCCc-----------ccceEEEeeeh------hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC---C
Q 007831 360 VGRAGAA-----------NLDVIQEVEYV------KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG---V 419 (588)
Q Consensus 360 ~~~~~~~-----------~~~~~~~~~~~------~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g---~ 419 (588)
....... .......+... .....+..+++.+ ..++++||||||+..+..+++.|+..+ .
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~ 588 (878)
T PRK09694 510 RGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQV 588 (878)
T ss_pred cccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCc
Confidence 0000000 00011111111 1122223333333 356789999999999999999999765 6
Q ss_pred cEEEEeCCCCHHHHH----HHHHHH-hcCC---cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCC
Q 007831 420 EAVAVHGGKDQEERE----YAISSF-KAGK---KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 420 ~~~~ihg~~~~~~R~----~~~~~f-~~g~---~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~ 490 (588)
++..+||.+++.+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| ++.|+||+||+||.+.
T Consensus 589 ~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 589 DIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 799999999999994 567788 6666 4799999999999999 68999998888 7899999999999875
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9.8e-30 Score=278.87 Aligned_cols=314 Identities=19% Similarity=0.232 Sum_probs=229.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+--.+..|+ |+.++||+|||++|.+|++..++. |..++||+||++||.|.++.+..+.
T Consensus 81 ~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~-----------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS-----------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 368888888777666665 899999999999999999977643 4469999999999999999999998
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc-cCCC-----CCcceeEecCcccccc-cC
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK-KMNL-----DNCRYLTLDEADRLVD-LG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~-~~~l-----~~~~~lViDEah~l~~-~~ 315 (588)
..+ ++++.+++||.+...+...+ .++|+|+||++| .|+|..+ .+.+ ..+.++||||||.|+= ..
T Consensus 148 ~~l------GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 148 EFL------GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred ccc------CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 876 89999999998877665544 589999999999 8998876 3334 5899999999999761 10
Q ss_pred ---------------cHHHHHHHHHhhhhc--------------ceeE--------------------------------
Q 007831 316 ---------------FEDDIREVFDHFKAQ--------------RQTL-------------------------------- 334 (588)
Q Consensus 316 ---------------~~~~i~~i~~~~~~~--------------~q~l-------------------------------- 334 (588)
....+..+...+... .+.+
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~ 299 (896)
T PRK13104 220 RTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNI 299 (896)
T ss_pred CCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhh
Confidence 111222222222111 1112
Q ss_pred --------------------------------------------------------------------------------
Q 007831 335 -------------------------------------------------------------------------------- 334 (588)
Q Consensus 335 -------------------------------------------------------------------------------- 334 (588)
T Consensus 300 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y 379 (896)
T PRK13104 300 MLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMY 379 (896)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc
Confidence
Q ss_pred ----EEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccH
Q 007831 335 ----LFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADV 407 (588)
Q Consensus 335 ----~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~ 407 (588)
+||+|....-.+|...|-..-+.+.. ..+.... -.....+.....|+..+++.+ ...+.|+||||+|+..+
T Consensus 380 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPt-nkp~~R~-d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~s 457 (896)
T PRK13104 380 NKLSGMTGTADTEAYEFQQIYNLEVVVIPT-NRSMIRK-DEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEAS 457 (896)
T ss_pred chhccCCCCChhHHHHHHHHhCCCEEECCC-CCCccee-cCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 22222222222222211111111100 0000000 111234555677777777655 45788999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC-------------------------
Q 007831 408 DDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD------------------------- 462 (588)
Q Consensus 408 ~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~------------------------- 462 (588)
+.++.+|...|+++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 458 E~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~ 535 (896)
T PRK13104 458 EFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKK 535 (896)
T ss_pred HHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999995 9999999999999862
Q ss_pred -------------cceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 463 -------------IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 463 -------------v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
==|||--..+.|..---|-.||+||.|.+|.+-.|++-++
T Consensus 536 ~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 536 EWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1267777788888888999999999999999999998774
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1e-29 Score=290.84 Aligned_cols=297 Identities=22% Similarity=0.295 Sum_probs=207.3
Q ss_pred HHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCC
Q 007831 172 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251 (588)
Q Consensus 172 ~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~ 251 (588)
+.+..+.+++.+|++|+||||||. ++|.+..-.. .+....+++.-|.|-.|..++..+.+..
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~--------~~~~~~I~~tQPRRlAA~svA~RvA~el-------- 135 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG--------RGSHGLIGHTQPRRLAARTVAQRIAEEL-------- 135 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC--------CCCCceEecCCccHHHHHHHHHHHHHHh--------
Confidence 444555567788999999999996 5676543211 0122355666799988888877776654
Q ss_pred CCceEEEEEcC-cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcc-cccccCcHHH-HHHHHHhhh
Q 007831 252 PDLRTLLCIGG-VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD-RLVDLGFEDD-IREVFDHFK 328 (588)
Q Consensus 252 ~~i~~~~~~gg-~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah-~l~~~~~~~~-i~~i~~~~~ 328 (588)
+..++...|. .....+ ......|.|+|+|.|+..+.... .++.+++||||||| ++++.+|... +..++.. .
T Consensus 136 -g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-r 209 (1283)
T TIGR01967 136 -GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-R 209 (1283)
T ss_pred -CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-C
Confidence 2333333332 111111 12357899999999999887654 48999999999999 6888877654 4555443 3
Q ss_pred hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh------hHHHHHHHH----HHhhcCCCCEE
Q 007831 329 AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK------QEAKIVYLL----ECLQKTPPPVL 398 (588)
Q Consensus 329 ~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~k~~~ll----~~l~~~~~~vi 398 (588)
++.|+|+||||++. ..+.+.+...|+ +.+.... ..+...+.... .......++ ..+....+.+|
T Consensus 210 pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdIL 283 (1283)
T TIGR01967 210 PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDIL 283 (1283)
T ss_pred CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEE
Confidence 57799999999975 356665555554 3332211 11222221111 012222222 22334567899
Q ss_pred EEeCccccHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCC--
Q 007831 399 IFCENKADVDDIHEYLLLKG---VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA-- 473 (588)
Q Consensus 399 IF~~s~~~~~~l~~~L~~~g---~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~-- 473 (588)
||+++..+++.+++.|...+ +.+..+||++++++|..+++.+ +..+|||||+++++|||||+|++||++++++
T Consensus 284 VFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~ 361 (1283)
T TIGR01967 284 IFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARIS 361 (1283)
T ss_pred EeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccc
Confidence 99999999999999998775 4578899999999999986543 3468999999999999999999999999543
Q ss_pred ----------------ChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 474 ----------------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 474 ----------------s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|.++|.||.|||||.| .|.|+.++++.
T Consensus 362 ~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 362 RYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred ccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 5689999999999997 99999999865
No 88
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=269.94 Aligned_cols=310 Identities=20% Similarity=0.255 Sum_probs=236.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
.| .|..+|++||-++..|.++++.|+|.+|||+++-.++...- ..+.+++|-.|-++|.+|-++.|+.
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-----------~h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-----------KHMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-----------hhccceEecchhhhhccchHHHHHH
Confidence 44 68999999999999999999999999999999888776443 2477899999999999999999998
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHH
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
.+.. +.+++|+...... +.++|+|.+.|..||.++.--++++.+|||||+|.+.|...+..|+
T Consensus 363 tF~D----------vgLlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWE 425 (1248)
T KOG0947|consen 363 TFGD----------VGLLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWE 425 (1248)
T ss_pred hccc----------cceeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccce
Confidence 7642 3488898766543 7899999999999999998889999999999999999988888999
Q ss_pred HHHHhhhhcceeEEEecccchHHH--HHHHHhcCCCeEEEec-CCCC---------------------------------
Q 007831 322 EVFDHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVG-RAGA--------------------------------- 365 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~-~~~~--------------------------------- 365 (588)
.++-.+|...++|++|||.|+..+ +++...-.+.+.+... ....
T Consensus 426 EViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~ 505 (1248)
T KOG0947|consen 426 EVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDS 505 (1248)
T ss_pred eeeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhh
Confidence 999999999999999999998753 2222222222222111 0000
Q ss_pred ---------------------cccceEEE-------eeehhhH----HHHHHHHHHhhcC-CCCEEEEeCccccHHHHHH
Q 007831 366 ---------------------ANLDVIQE-------VEYVKQE----AKIVYLLECLQKT-PPPVLIFCENKADVDDIHE 412 (588)
Q Consensus 366 ---------------------~~~~~~~~-------~~~~~~~----~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~ 412 (588)
......+. ....... ..+..++..+.+. --|+||||-+++.|++.++
T Consensus 506 ~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~ 585 (1248)
T KOG0947|consen 506 LKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYAD 585 (1248)
T ss_pred hcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHH
Confidence 00000000 0000001 1255566666654 4599999999999999999
Q ss_pred HHHHcC---------------------------------------CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007831 413 YLLLKG---------------------------------------VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 413 ~L~~~g---------------------------------------~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~ 453 (588)
+|.... -.++++|||+-+--++-+.-.|..|-++||+||.+
T Consensus 586 ~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATET 665 (1248)
T KOG0947|consen 586 YLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATET 665 (1248)
T ss_pred HHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhh
Confidence 995421 12577899999999999999999999999999999
Q ss_pred cccCCCCCCcceEEecCCC---------CChhHHHHHhcccccCCC--ccEEEEEecCC
Q 007831 454 ASKGLDFPDIQHVINYDMP---------AEIENYVHRIGRTGRCGK--TGIATTFINKN 501 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p---------~s~~~y~qriGRagR~g~--~g~~~~~~~~~ 501 (588)
+++|+|.|+-.+|+ -.+- -.+..|.|++|||||.|- +|+++++....
T Consensus 666 FAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 666 FAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999866665 2222 268899999999999985 57776666554
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.3e-28 Score=270.97 Aligned_cols=321 Identities=22% Similarity=0.252 Sum_probs=259.5
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHh----cC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEE
Q 007831 151 PEPILKKLKAKGIVQPTPIQVQGLPVVL----SG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLI 224 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il----~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Li 224 (588)
+......+...--..-||-|..||..+. ++ .|-++|+..|-|||-+++-+++..++ +|++|.|
T Consensus 580 d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-----------~GKQVAv 648 (1139)
T COG1197 580 DTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-----------DGKQVAV 648 (1139)
T ss_pred ChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-----------CCCeEEE
Confidence 3445555555522356999999999988 34 48899999999999999999988764 5789999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcccCCCCCc
Q 007831 225 VCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 225 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~L~~~l~~~~~~l~~~ 300 (588)
||||--||+|.++.|++-+..+ .+++..+.--.+.+++...+ .. ..||||+| +-|.++.+.+.++
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~f------PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdL 717 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGF------PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDL 717 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCC------CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecC
Confidence 9999999999999999988765 78888887766666665444 33 58999999 6777888899999
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhH
Q 007831 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE 380 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 380 (588)
.++||||-|+ |+-.-+.-++.++.+..++-+|||+-|...+++-.-+.+--.+.. ++.....+...+.-.+..
T Consensus 718 GLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T--PP~~R~pV~T~V~~~d~~ 790 (1139)
T COG1197 718 GLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT--PPEDRLPVKTFVSEYDDL 790 (1139)
T ss_pred CeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccC--CCCCCcceEEEEecCChH
Confidence 9999999999 777778888889999999999999988877777666665444433 223444454444433333
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007831 381 AKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 381 ~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
---..++..+ ..++++-..+|.++..+.+++.|+.. ...+++.||.|+..+-+.++..|.+|+.+|||||.+.+-||
T Consensus 791 ~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGI 869 (1139)
T COG1197 791 LIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGI 869 (1139)
T ss_pred HHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCc
Confidence 3223333333 35678999999999999999999876 56788999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCC-ChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 459 DFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 459 Dip~v~~VI~~~~p~-s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|||+++++|..+..+ -.++..|..||+||..+.+.|+.++.+.
T Consensus 870 DIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 870 DIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999999776554 6899999999999999999999999875
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=4.1e-29 Score=265.30 Aligned_cols=291 Identities=23% Similarity=0.287 Sum_probs=203.3
Q ss_pred CCCCcHHHHHHHHHHhc----CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~----g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
...|+++|.+++..+.+ ++..++++|||+|||++++..+... +..+||||||++|+.||.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------cCCEEEEECcHHHHHHHHHH
Confidence 34799999999999997 8999999999999998876655432 22399999999999999987
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHH
Q 007831 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~ 318 (588)
+.+++.. ...+..+.|+..... . ..|.|+|.+.+........+..+.+.+|||||||++....+
T Consensus 100 ~~~~~~~-------~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~-- 163 (442)
T COG1061 100 LKKFLLL-------NDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY-- 163 (442)
T ss_pred HHHhcCC-------ccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH--
Confidence 8777531 112333444322111 1 36999999887553211233344789999999999876443
Q ss_pred HHHHHHHhhhhcceeEEEecccchHHHHH---HHHhcCCCeEEEecCCC-----CcccceEEEeee--h-----------
Q 007831 319 DIREVFDHFKAQRQTLLFSATMPTKIQNF---ARSALVKPVTVNVGRAG-----AANLDVIQEVEY--V----------- 377 (588)
Q Consensus 319 ~i~~i~~~~~~~~q~l~~SAT~~~~i~~~---~~~~l~~p~~i~~~~~~-----~~~~~~~~~~~~--~----------- 377 (588)
+.+...+......+++|||++...... ....+ .|+........ ...+.....+.. .
T Consensus 164 --~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~ 240 (442)
T COG1061 164 --RRILELLSAAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKES 240 (442)
T ss_pred --HHHHHhhhcccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhh
Confidence 444444443333899999987432111 11111 12222221110 000000000000 0
Q ss_pred ------------------------hhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHH
Q 007831 378 ------------------------KQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQE 431 (588)
Q Consensus 378 ------------------------~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~ 431 (588)
....++..+...+.. .+.+++|||.+..++..++..|...|+ +..+.|..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~ 319 (442)
T COG1061 241 ARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKE 319 (442)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHH
Confidence 011122222222222 356999999999999999999998888 88999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhccccc
Q 007831 432 EREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 487 (588)
Q Consensus 432 ~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR 487 (588)
+|..+++.|+.|.+++||++.++..|+|+|+++++|......|...|+||+||.-|
T Consensus 320 eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 320 EREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.5e-29 Score=273.59 Aligned_cols=315 Identities=21% Similarity=0.263 Sum_probs=236.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|.-+.-.+..|+ |+.+.||+|||+++.+|++...+. |..+-||+||..||.|.++.+..
T Consensus 79 g~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-----------GKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred CC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHH
Confidence 54 68999998887777775 999999999999999999754443 34577999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHccc------CCCCCcceeEecCcccccc-
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKK------MNLDNCRYLTLDEADRLVD- 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~------~~l~~~~~lViDEah~l~~- 313 (588)
++..+ ++++++++|+.+..++...+ .++|+++||++| .|+|..+. ..++.+.++||||||.|+=
T Consensus 145 l~~~L------Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID 216 (830)
T PRK12904 145 LYEFL------GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID 216 (830)
T ss_pred HHhhc------CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec
Confidence 99877 99999999998888776665 389999999999 88887653 3467899999999999761
Q ss_pred cC---------------cHHHHHHHHHhhhhc------------------------------------------------
Q 007831 314 LG---------------FEDDIREVFDHFKAQ------------------------------------------------ 330 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~~------------------------------------------------ 330 (588)
.. ....+..+...+...
T Consensus 217 eArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~ 296 (830)
T PRK12904 217 EARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALR 296 (830)
T ss_pred cCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHH
Confidence 00 111111111111100
Q ss_pred ---------------------------------------------------------------------ceeEEEecccc
Q 007831 331 ---------------------------------------------------------------------RQTLLFSATMP 341 (588)
Q Consensus 331 ---------------------------------------------------------------------~q~l~~SAT~~ 341 (588)
..+.+||+|..
T Consensus 297 A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 376 (830)
T PRK12904 297 AHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTAD 376 (830)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcH
Confidence 12345566655
Q ss_pred hHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcC
Q 007831 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
....+|...+-..-+.+.... +....+. ....+.....|+..+...+. ..+.|+||||+|+..++.++..|...|
T Consensus 377 te~~E~~~iY~l~vv~IPtnk-p~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g 454 (830)
T PRK12904 377 TEAEEFREIYNLDVVVIPTNR-PMIRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG 454 (830)
T ss_pred HHHHHHHHHhCCCEEEcCCCC-CeeeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 444444444332222221111 1111111 12334456667777776663 467899999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc-----------------------------------
Q 007831 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDI----------------------------------- 463 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v----------------------------------- 463 (588)
+++..+|+. +.+|...+..|+.+...|+|||++++||+||+=-
T Consensus 455 i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (830)
T PRK12904 455 IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE 532 (830)
T ss_pred CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH
Confidence 999999995 8899999999999999999999999999999642
Q ss_pred ---ceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 464 ---QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 464 ---~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
=|||--..|.|..---|-.||+||.|.+|.+-.|++-++
T Consensus 533 ~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 533 AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 268888889999999999999999999999999998774
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.3e-28 Score=264.42 Aligned_cols=287 Identities=19% Similarity=0.253 Sum_probs=195.6
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007831 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 ii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
++.|+||||||.+|+..+... +. .|.++|||+|+++|+.|+++.+++.+ +.++..++++.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~----------~g~~vLvlvP~i~L~~Q~~~~l~~~f---------~~~v~vlhs~~ 60 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LA----------LGKSVLVLVPEIALTPQMIQRFKYRF---------GSQVAVLHSGL 60 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HH----------cCCeEEEEeCcHHHHHHHHHHHHHHh---------CCcEEEEECCC
Confidence 467999999999997655433 33 46789999999999999999998865 45678889887
Q ss_pred chHHHHH---HHh-cCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCc---HHHHH--HHHHhhhhcceeE
Q 007831 264 DMRSQLE---VVK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF---EDDIR--EVFDHFKAQRQTL 334 (588)
Q Consensus 264 ~~~~~~~---~l~-~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~---~~~i~--~i~~~~~~~~q~l 334 (588)
+..+... .+. ..++|||+|+..+. ..+.++++|||||+|....++. .-..+ .++.......+++
T Consensus 61 ~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vi 133 (505)
T TIGR00595 61 SDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVV 133 (505)
T ss_pred CHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEE
Confidence 7655433 333 34799999997662 3578899999999998764331 11111 1222333567899
Q ss_pred EEecccchHHHHHHHHhcCCCeEEEecC-CCCcccceEEEeeehhh------HHHHHHHHHHhhcCCCCEEEEeCcccc-
Q 007831 335 LFSATMPTKIQNFARSALVKPVTVNVGR-AGAANLDVIQEVEYVKQ------EAKIVYLLECLQKTPPPVLIFCENKAD- 406 (588)
Q Consensus 335 ~~SAT~~~~i~~~~~~~l~~p~~i~~~~-~~~~~~~~~~~~~~~~~------~~k~~~ll~~l~~~~~~viIF~~s~~~- 406 (588)
++|||++.+....+..- ....+.... ...........+..... ...+...+....+.+.++|||+|++..
T Consensus 134 l~SATPsles~~~~~~g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya 211 (505)
T TIGR00595 134 LGSATPSLESYHNAKQK--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYS 211 (505)
T ss_pred EEeCCCCHHHHHHHhcC--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCC
Confidence 99999876644443221 111111111 11111111111111110 112222333333456789999776532
Q ss_pred -----------------------------------------------------------HHHHHHHHHHc--CCcEEEEe
Q 007831 407 -----------------------------------------------------------VDDIHEYLLLK--GVEAVAVH 425 (588)
Q Consensus 407 -----------------------------------------------------------~~~l~~~L~~~--g~~~~~ih 425 (588)
.+.+.+.|... +.++..+|
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d 291 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARID 291 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEe
Confidence 57888888876 78999999
Q ss_pred CCCCHHHH--HHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE--ecCCCC----------ChhHHHHHhcccccCCCc
Q 007831 426 GGKDQEER--EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI--NYDMPA----------EIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 426 g~~~~~~R--~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI--~~~~p~----------s~~~y~qriGRagR~g~~ 491 (588)
+++++..+ ..+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|... ....|+|++||+||.++.
T Consensus 292 ~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~ 371 (505)
T TIGR00595 292 SDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP 371 (505)
T ss_pred cccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC
Confidence 99987665 8899999999999999999999999999999885 555422 246789999999999999
Q ss_pred cEEEEEec
Q 007831 492 GIATTFIN 499 (588)
Q Consensus 492 g~~~~~~~ 499 (588)
|.+++...
T Consensus 372 g~viiqt~ 379 (505)
T TIGR00595 372 GQVIIQTY 379 (505)
T ss_pred CEEEEEeC
Confidence 98886543
No 93
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.2e-28 Score=266.33 Aligned_cols=148 Identities=24% Similarity=0.331 Sum_probs=128.9
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007831 146 KDMRFPEPILKKLK-----AKGIVQP---TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 146 ~~~~l~~~l~~~l~-----~~g~~~p---~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
+.+.+.+.+.+.+. .+||..| +|+|.++++.++.++++|+.|+||+|||++|++|++..++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 34567777777776 5689998 99999999999999999999999999999999999987754
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcccCC
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKKMN 296 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~~ 296 (588)
+..++||+||++||.|+.+.+..+...+ ++++.+++||.+...+...+ +++|+|+||++| .|++..+.+.
T Consensus 135 -g~~v~IVTpTrELA~Qdae~m~~L~k~l------GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~ 205 (970)
T PRK12899 135 -GKPVHLVTVNDYLAQRDCEWVGSVLRWL------GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIA 205 (970)
T ss_pred -cCCeEEEeCCHHHHHHHHHHHHHHHhhc------CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCC
Confidence 2238999999999999999999998765 89999999999998887655 589999999999 9999887666
Q ss_pred CC-------CcceeEecCccccc
Q 007831 297 LD-------NCRYLTLDEADRLV 312 (588)
Q Consensus 297 l~-------~~~~lViDEah~l~ 312 (588)
++ .+.++||||||.|+
T Consensus 206 ~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 206 TRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred cCHHHhhcccccEEEEechhhhh
Confidence 55 45899999999987
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.7e-28 Score=268.12 Aligned_cols=314 Identities=19% Similarity=0.253 Sum_probs=229.0
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+.-.+..|+ |..+.||+|||+++.+|++..++. |..+-|++||.-||.|-++.+..++
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 478999998888777776 999999999999999999877654 6779999999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcc------cCCCCCcceeEecCccccc-ccC
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK-DMLAKK------KMNLDNCRYLTLDEADRLV-DLG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~------~~~l~~~~~lViDEah~l~-~~~ 315 (588)
..+ ++++.++.|+.+..+..... .++|+++|...|- |.|..+ ....+.+.+.||||+|.++ |..
T Consensus 146 ~~L------Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWL------GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred Hhc------CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 887 99999999887766654443 4799999988762 333322 2234578899999999875 110
Q ss_pred ---------------cHHHHHHHHHhhhhc--------------------------------------------------
Q 007831 316 ---------------FEDDIREVFDHFKAQ-------------------------------------------------- 330 (588)
Q Consensus 316 ---------------~~~~i~~i~~~~~~~-------------------------------------------------- 330 (588)
....+..+...+...
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 111111111111100
Q ss_pred ------------------------------------------------------------------------------ce
Q 007831 331 ------------------------------------------------------------------------------RQ 332 (588)
Q Consensus 331 ------------------------------------------------------------------------------~q 332 (588)
.+
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 01
Q ss_pred eEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHH
Q 007831 333 TLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDD 409 (588)
Q Consensus 333 ~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~ 409 (588)
+.+||+|.......|...+-..-+.+.. ..+... .-.....+.....|+..+.+.+ ...+.|+||||+|+..++.
T Consensus 378 l~GmTGTa~~e~~Ef~~iY~l~vv~IPt-nkp~~r-~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 378 LSGMTGTAKTEEEEFREIYNMEVITIPT-NRPVIR-KDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSER 455 (796)
T ss_pred hhccCCCCHHHHHHHHHHhCCCEEEcCC-CCCeee-eeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 2334444433333332222221111110 000000 0111223445566777777666 3467899999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCC---Ccc-----eEEecCCCCChhHHHHH
Q 007831 410 IHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP---DIQ-----HVINYDMPAEIENYVHR 481 (588)
Q Consensus 410 l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip---~v~-----~VI~~~~p~s~~~y~qr 481 (588)
+++.|...|+++..+|+++.+.++..+...++.|. |+|||++++||+||+ +|. |||++++|.|...|.|+
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999999999999888888877777776 999999999999995 899 99999999999999999
Q ss_pred hcccccCCCccEEEEEecCCC
Q 007831 482 IGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 482 iGRagR~g~~g~~~~~~~~~~ 502 (588)
+|||||.|.+|.+..|++.++
T Consensus 534 ~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 534 RGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hhhhccCCCCcceEEEEeccc
Confidence 999999999999999999874
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.6e-29 Score=260.83 Aligned_cols=316 Identities=21% Similarity=0.235 Sum_probs=238.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
-.+.|+|.++|..+-++.++++.|.|.+|||.++-.++.+.+. +..+++|-.|-++|.+|-|+++..-+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-----------~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-----------EKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-----------hcCeEEeeChhhhhcchhHHHHHHHh
Confidence 3679999999999999999999999999999999998887763 35689999999999999999988765
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHH
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i 323 (588)
+ .|++.+|+...... +..+|.|.+-|..||.++..-.+.+.+|||||+|.|-|...+-.|+.-
T Consensus 197 ~----------DVGLMTGDVTInP~-------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEET 259 (1041)
T KOG0948|consen 197 K----------DVGLMTGDVTINPD-------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET 259 (1041)
T ss_pred c----------ccceeecceeeCCC-------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeee
Confidence 3 36778888766544 679999999999999999888999999999999999998777778877
Q ss_pred HHhhhhcceeEEEecccchHHH--HHHHHhcCCCeEEEec-CCCCccc--------ceEEEeeeh---hhHHHHH-----
Q 007831 324 FDHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVG-RAGAANL--------DVIQEVEYV---KQEAKIV----- 384 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~-~~~~~~~--------~~~~~~~~~---~~~~k~~----- 384 (588)
+-.+|...+.+++|||+|+..+ +++...-..|+.+... ....... +-.+.+.-. ..++.+.
T Consensus 260 IIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 260 IILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred EEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 7888999999999999998753 2333333455443221 1110000 000000000 0111122
Q ss_pred ---------------------------------HHHHH-hhcCCCCEEEEeCccccHHHHHHHHHHcC------------
Q 007831 385 ---------------------------------YLLEC-LQKTPPPVLIFCENKADVDDIHEYLLLKG------------ 418 (588)
Q Consensus 385 ---------------------------------~ll~~-l~~~~~~viIF~~s~~~~~~l~~~L~~~g------------ 418 (588)
.++.. +.....|+|||+-++++|+.++-.+....
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~ 419 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVET 419 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHH
Confidence 22222 22345689999999999999998774421
Q ss_pred ---------------------------CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe---
Q 007831 419 ---------------------------VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN--- 468 (588)
Q Consensus 419 ---------------------------~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~--- 468 (588)
..++++|+|+-+--++-+.-.|.+|-+++|.||.+++.|+|.|+-++|+.
T Consensus 420 iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~r 499 (1041)
T KOG0948|consen 420 IFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVR 499 (1041)
T ss_pred HHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeecc
Confidence 12577899999999999999999999999999999999999999777762
Q ss_pred -cCC----CCChhHHHHHhcccccCCC--ccEEEEEecCCCChhHH
Q 007831 469 -YDM----PAEIENYVHRIGRTGRCGK--TGIATTFINKNQSETTL 507 (588)
Q Consensus 469 -~~~----p~s~~~y~qriGRagR~g~--~g~~~~~~~~~~~~~~~ 507 (588)
||- .-|--.|+|+.|||||.|. .|.+|+.+++.-+....
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~a 545 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVA 545 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHH
Confidence 221 1267789999999999985 58888888776444433
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=5e-27 Score=265.28 Aligned_cols=315 Identities=21% Similarity=0.283 Sum_probs=216.6
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.++++|.+++..+. +|.+.|+...+|.|||+..+. ++..+.... +....+|||||. ++..||.+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~-------~~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR-------GITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc-------CCCCCEEEEeCh-HHHHHHHHHHH
Confidence 68999999999876 678999999999999987533 333333211 223457999997 66688999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHH--H-hcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcH
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV--V-KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~--l-~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 317 (588)
+|+ |.+++..++|.......... + ....+|+|+|++.+..... .+.-..+.+|||||||++.+..
T Consensus 240 kw~--------p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~-- 307 (1033)
T PLN03142 240 RFC--------PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN-- 307 (1033)
T ss_pred HHC--------CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--
Confidence 986 36788888886543332211 1 2357999999988754322 2223357899999999998643
Q ss_pred HHHHHHHHhhhhcceeEEEecccch-HHHHH----------------------------------------HHHh-----
Q 007831 318 DDIREVFDHFKAQRQTLLFSATMPT-KIQNF----------------------------------------ARSA----- 351 (588)
Q Consensus 318 ~~i~~i~~~~~~~~q~l~~SAT~~~-~i~~~----------------------------------------~~~~----- 351 (588)
......+..+.... .+++|+||-. .+.++ ++.+
T Consensus 308 Sklskalr~L~a~~-RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 308 SLLSKTMRLFSTNY-RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhh
Confidence 45556666665443 5889999721 11110 0000
Q ss_pred -------cCCC--eEEEecCCC--------------------Ccc---cceEE-----------------------Eeee
Q 007831 352 -------LVKP--VTVNVGRAG--------------------AAN---LDVIQ-----------------------EVEY 376 (588)
Q Consensus 352 -------l~~p--~~i~~~~~~--------------------~~~---~~~~~-----------------------~~~~ 376 (588)
+... ..+.+.... ... .++.. .-..
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~l 466 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHL 466 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHH
Confidence 0000 011111000 000 00000 0000
Q ss_pred hhhHHH---HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC---CcEEEEE
Q 007831 377 VKQEAK---IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG---KKDVLVA 450 (588)
Q Consensus 377 ~~~~~k---~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g---~~~vLVa 450 (588)
+....| +..++..+...+.++|||+......+.|.++|...|+.+..+||+++..+|..+++.|+.. ...+|++
T Consensus 467 ie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 467 VENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 111223 3344555566788999999999999999999999999999999999999999999999853 3467999
Q ss_pred cCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCC
Q 007831 451 TDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~ 501 (588)
|.+++.|||+..+++||+||+|||+..+.|++||+.|.|++..+ +.|++.+
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999998655 4445554
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.1e-27 Score=262.02 Aligned_cols=318 Identities=19% Similarity=0.255 Sum_probs=237.5
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007831 159 KAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 159 ~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
...+| .|.++|++++-.+..|.+|+++||||||||++...++...+. +|.+++|..|.++|.+|.++.
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-----------~~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-----------DGQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-----------cCCceEeccchhhhhhhHHHH
Confidence 34566 699999999999999999999999999999999888776653 466799999999999999999
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHH
Q 007831 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~ 318 (588)
+...+... .-.+++++|+.+... ++.++|.|.+.|.+|+.++...+..+..|||||+|.|.+...+.
T Consensus 182 l~~~fgdv------~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~ 248 (1041)
T COG4581 182 LLAKFGDV------ADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGV 248 (1041)
T ss_pred HHHHhhhh------hhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccch
Confidence 98876422 123577888766543 48899999999999999998889999999999999999998889
Q ss_pred HHHHHHHhhhhcceeEEEecccchHHH--HHHHHhcCCCeEEEecCCCCcccce--------EEEeeehh----------
Q 007831 319 DIREVFDHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVGRAGAANLDV--------IQEVEYVK---------- 378 (588)
Q Consensus 319 ~i~~i~~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~~~~~~~~~~--------~~~~~~~~---------- 378 (588)
.|+.++-.++...|+++||||+|+..+ .++...-..|+.+.....-...... ...+....
T Consensus 249 VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a 328 (1041)
T COG4581 249 VWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSA 328 (1041)
T ss_pred hHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhh
Confidence 999999999999999999999987643 3333333444443322111110000 00000000
Q ss_pred ----------------------------------hHHHHHHHHHHhh-cCCCCEEEEeCccccHHHHHHHHHHc------
Q 007831 379 ----------------------------------QEAKIVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLLLK------ 417 (588)
Q Consensus 379 ----------------------------------~~~k~~~ll~~l~-~~~~~viIF~~s~~~~~~l~~~L~~~------ 417 (588)
...+...++..+. ...-|+|+||-++..|+..+..+...
T Consensus 329 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~ 408 (1041)
T COG4581 329 NRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTE 408 (1041)
T ss_pred hhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCC
Confidence 0000111233332 23458999999999999888877421
Q ss_pred ----------------------CC-------------cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC
Q 007831 418 ----------------------GV-------------EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 418 ----------------------g~-------------~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~ 462 (588)
++ ..+++|+||-+..|..+...|..|-.+|++||.+++.|+|.|.
T Consensus 409 ~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 409 EKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred cHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 12 1347899999999999999999999999999999999999998
Q ss_pred cceEE----ecC----CCCChhHHHHHhcccccCCCc--cEEEEEecCC
Q 007831 463 IQHVI----NYD----MPAEIENYVHRIGRTGRCGKT--GIATTFINKN 501 (588)
Q Consensus 463 v~~VI----~~~----~p~s~~~y~qriGRagR~g~~--g~~~~~~~~~ 501 (588)
-++|+ .+| .+-++..|+|+.|||||.|.. |.+++...+.
T Consensus 489 rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 489 RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 76665 222 234799999999999999864 6666664443
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=4.5e-27 Score=252.87 Aligned_cols=332 Identities=20% Similarity=0.239 Sum_probs=241.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHH--HHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007831 149 RFPEPILKKLKAKGIVQPTPIQVQGL--PVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 149 ~l~~~l~~~l~~~g~~~p~~~Q~~~i--~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
+++.-..-..+.+|+.+++.||.+++ |.++.++|+|..+||+.|||+++-+-++..++.. +..++++.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----------rr~~llil 276 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----------RRNVLLIL 276 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----------hhceeEec
Confidence 33344444455569999999999998 6688999999999999999999999998877763 45689999
Q ss_pred CCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--ccCCCCCcceeE
Q 007831 227 PSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--KKMNLDNCRYLT 304 (588)
Q Consensus 227 Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~--~~~~l~~~~~lV 304 (588)
|..+.+..-...+..+...+ ++++-.+.|..+..... +.-++.|||-++-..++.. ..-.+..+++||
T Consensus 277 p~vsiv~Ek~~~l~~~~~~~------G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vv 346 (1008)
T KOG0950|consen 277 PYVSIVQEKISALSPFSIDL------GFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVV 346 (1008)
T ss_pred ceeehhHHHHhhhhhhcccc------CCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEE
Confidence 99999998888888887776 88888888766554432 2358999999987655543 233467889999
Q ss_pred ecCcccccccCcHHHHHHHHHhh-----hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCccc--ceEEEeeeh
Q 007831 305 LDEADRLVDLGFEDDIREVFDHF-----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANL--DVIQEVEYV 377 (588)
Q Consensus 305 iDEah~l~~~~~~~~i~~i~~~~-----~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~--~~~~~~~~~ 377 (588)
|||.|.+.+.+.+..++.++..+ ....|+|+||||+|+. .++..++...+.....++-.... .+-..+.-.
T Consensus 347 VdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~ 424 (1008)
T KOG0950|consen 347 VDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYES 424 (1008)
T ss_pred EeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccc
Confidence 99999999999888888777654 3346799999999975 34444444332222111110000 000000000
Q ss_pred hh-------------------HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc---------------------
Q 007831 378 KQ-------------------EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--------------------- 417 (588)
Q Consensus 378 ~~-------------------~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--------------------- 417 (588)
.. .+.+..+.......+.++||||+++..|+.++..+...
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 00 01112222222223557999999999999988665321
Q ss_pred -----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC----CCChh
Q 007831 418 -----------------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM----PAEIE 476 (588)
Q Consensus 418 -----------------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~----p~s~~ 476 (588)
-+.+..+|.|++.++|..+...|++|...|++||++++.|+|+|+.+++|-.-+ +.+..
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~ 584 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRL 584 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhh
Confidence 234677899999999999999999999999999999999999999998884432 35788
Q ss_pred HHHHHhcccccCCC--ccEEEEEecCCC
Q 007831 477 NYVHRIGRTGRCGK--TGIATTFINKNQ 502 (588)
Q Consensus 477 ~y~qriGRagR~g~--~g~~~~~~~~~~ 502 (588)
.|.||+|||||.|- .|.+++++.+.+
T Consensus 585 ~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 585 EYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred hHHhhhhhhhhcccccCcceEEEeeccc
Confidence 99999999999974 588899988874
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.8e-26 Score=252.43 Aligned_cols=313 Identities=19% Similarity=0.243 Sum_probs=225.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+++|.-+--.+..|+ |+.++||.|||++|.+|++..++. |..|.||+|++.||.|..+.+..++.
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~-----------g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 67888887766665554 899999999999999999877654 44599999999999999999999988
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc-cCC-----CCCcceeEecCccccccc-C-
Q 007831 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK-KMN-----LDNCRYLTLDEADRLVDL-G- 315 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~-~~~-----l~~~~~lViDEah~l~~~-~- 315 (588)
.+ ++++.++.++.+..+.... -+++|+++||++| .|+|..+ .+. ...+.++||||+|.++-. .
T Consensus 149 ~l------Glsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 149 FL------GLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred hc------CCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 77 9999999998876443222 2589999999999 8888765 333 377899999999987621 0
Q ss_pred --------------cHHHHHHHHHhhhh-------------------cce------------------------------
Q 007831 316 --------------FEDDIREVFDHFKA-------------------QRQ------------------------------ 332 (588)
Q Consensus 316 --------------~~~~i~~i~~~~~~-------------------~~q------------------------------ 332 (588)
....+..+...+.. ..+
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 11111111111110 001
Q ss_pred --------------------------------------------------------------------------------
Q 007831 333 -------------------------------------------------------------------------------- 332 (588)
Q Consensus 333 -------------------------------------------------------------------------------- 332 (588)
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence
Q ss_pred ------eEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCc
Q 007831 333 ------TLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCEN 403 (588)
Q Consensus 333 ------~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s 403 (588)
+.+||+|......+|...+-..-+.+.... +....+ .....+.....|+..+++.+ .+.+.|+||||.|
T Consensus 381 Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnk-p~~R~d-~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNR-PMVRKD-MADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCC-Ccccee-CCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 122222222222222222211111111000 011111 11123445566766666554 4578899999999
Q ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC---------------------
Q 007831 404 KADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD--------------------- 462 (588)
Q Consensus 404 ~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~--------------------- 462 (588)
+..++.++.+|...|+.+..+|+.+++.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999998 9999999999999962
Q ss_pred ----------------cceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 463 ----------------IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 463 ----------------v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
==|||--..+.|..---|-.||+||.|.+|.+..|++-++
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 2368888888898888999999999999999999998774
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=5.4e-26 Score=261.74 Aligned_cols=305 Identities=19% Similarity=0.232 Sum_probs=198.8
Q ss_pred CCCcHHHHHHHHHHh----c-CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVL----S-GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~-g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
..++++|.+||..+. . .++++++++||||||.+++. ++..++.. ....++|||+|+++|+.|+.+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--------~~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--------KRFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--------CccCeEEEEecHHHHHHHHHHH
Confidence 358999999998876 2 36899999999999987543 33344332 2456899999999999999999
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-----cCCCCCcceeEecCcccccc
Q 007831 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-----KMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-----~~~l~~~~~lViDEah~l~~ 313 (588)
|..+.... ......+++....... .......|+|+|+++|...+... ...+..+++||+||||+-..
T Consensus 483 F~~~~~~~------~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~ 554 (1123)
T PRK11448 483 FKDTKIEG------DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYT 554 (1123)
T ss_pred HHhccccc------ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCc
Confidence 98873210 1111111111111111 11234789999999997765431 24567889999999999531
Q ss_pred ---------cC------cHHHHHHHHHhhhhcceeEEEecccchHHHHHH--------------HHhcC---CCeEEEec
Q 007831 314 ---------LG------FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFA--------------RSALV---KPVTVNVG 361 (588)
Q Consensus 314 ---------~~------~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~--------------~~~l~---~p~~i~~~ 361 (588)
.+ +...++.++.++. ...|+|||||......+. ..++. .|+.+...
T Consensus 555 ~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~ 632 (1123)
T PRK11448 555 LDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETR 632 (1123)
T ss_pred cccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEE
Confidence 11 2367788888774 357999999964432221 11122 12222210
Q ss_pred --CCCCc--cc-----------ceE-----EEeeehh-h-------HHHH----HHHHHHhhc-CCCCEEEEeCccccHH
Q 007831 362 --RAGAA--NL-----------DVI-----QEVEYVK-Q-------EAKI----VYLLECLQK-TPPPVLIFCENKADVD 408 (588)
Q Consensus 362 --~~~~~--~~-----------~~~-----~~~~~~~-~-------~~k~----~~ll~~l~~-~~~~viIF~~s~~~~~ 408 (588)
..+.. .. .+. ..+.+.. . .... ..+.+.+.. .++++||||.++.+|+
T Consensus 633 ~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~ 712 (1123)
T PRK11448 633 LSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHAD 712 (1123)
T ss_pred eccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHH
Confidence 00000 00 000 0000000 0 0011 122233322 3469999999999999
Q ss_pred HHHHHHHHc------CC---cEEEEeCCCCHHHHHHHHHHHhcCCc-EEEEEcCccccCCCCCCcceEEecCCCCChhHH
Q 007831 409 DIHEYLLLK------GV---EAVAVHGGKDQEEREYAISSFKAGKK-DVLVATDVASKGLDFPDIQHVINYDMPAEIENY 478 (588)
Q Consensus 409 ~l~~~L~~~------g~---~~~~ihg~~~~~~R~~~~~~f~~g~~-~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y 478 (588)
.+.+.|... ++ .+..+||+.+ ++..+++.|+++.. .|+|+++++..|+|+|.+.+||+++.+.|...|
T Consensus 713 ~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf 790 (1123)
T PRK11448 713 MVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILY 790 (1123)
T ss_pred HHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHH
Confidence 999887653 22 4567899875 56789999999886 699999999999999999999999999999999
Q ss_pred HHHhcccccCC
Q 007831 479 VHRIGRTGRCG 489 (588)
Q Consensus 479 ~qriGRagR~g 489 (588)
+||+||+.|.-
T Consensus 791 ~QmIGRgtR~~ 801 (1123)
T PRK11448 791 EQMLGRATRLC 801 (1123)
T ss_pred HHHHhhhccCC
Confidence 99999999963
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=6.6e-25 Score=211.41 Aligned_cols=299 Identities=22% Similarity=0.259 Sum_probs=212.8
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.+++|.|..+-..++ +..++++.|-||+|||.. +.+.+..+++ .|.++.+..|....|.+++.++
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh----------cCCeEEEecCcccchHHHHHHH
Confidence 378999998877765 668999999999999965 4555666555 5889999999999999999999
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHH
Q 007831 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~ 319 (588)
+.-+. +..+.+++|+.+..-+ .+++|+|...|+.+- +.++++|+||+|...-..- ..
T Consensus 165 k~aF~--------~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d-~~ 221 (441)
T COG4098 165 KQAFS--------NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDD-QS 221 (441)
T ss_pred HHhhc--------cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCC-HH
Confidence 98764 6788899998655432 689999998876653 4578999999998653221 12
Q ss_pred HH-HHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh----------HHHHHHHHH
Q 007831 320 IR-EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ----------EAKIVYLLE 388 (588)
Q Consensus 320 i~-~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~----------~~k~~~ll~ 388 (588)
+. .+-+..+...-+|.+|||+++.++.-+..--..++ .+.......+-....+.+... ..++...++
T Consensus 222 L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~~~~--klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~le 299 (441)
T COG4098 222 LQYAVKKARKKEGATIYLTATPTKKLERKILKGNLRIL--KLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLE 299 (441)
T ss_pred HHHHHHHhhcccCceEEEecCChHHHHHHhhhCCeeEe--ecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHH
Confidence 22 22223344556899999999887654433222222 222221112222223333322 124444555
Q ss_pred HhhcCCCCEEEEeCccccHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceE
Q 007831 389 CLQKTPPPVLIFCENKADVDDIHEYLLLK-G-VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 389 ~l~~~~~~viIF~~s~~~~~~l~~~L~~~-g-~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~V 466 (588)
.-.+.+.|++||++++...+.++..|+.. . ...+.+|+. ...|.+.+++|++|++.+||+|.+++||+.+|+|+++
T Consensus 300 kq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~ 377 (441)
T COG4098 300 KQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVF 377 (441)
T ss_pred HHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEE
Confidence 55567889999999999999999999543 3 344678885 3578889999999999999999999999999999996
Q ss_pred EecCCC--CChhHHHHHhcccccCC--CccEEEEEecC
Q 007831 467 INYDMP--AEIENYVHRIGRTGRCG--KTGIATTFINK 500 (588)
Q Consensus 467 I~~~~p--~s~~~y~qriGRagR~g--~~g~~~~~~~~ 500 (588)
|.-.-- .+.+..+|..||+||.- .+|.+..|-..
T Consensus 378 Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 378 VLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred EecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 643322 47889999999999973 35655555443
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=3.8e-26 Score=212.30 Aligned_cols=165 Identities=32% Similarity=0.578 Sum_probs=142.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007831 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
||+|.++|+.+.+|+++++.||||+|||+++++|++..+.+. ...++||++|+++|+.|+++.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------~~~~~lii~P~~~l~~q~~~~~~~~~~~- 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---------KDARVLIIVPTRALAEQQFERLRKFFSN- 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------SSSEEEEEESSHHHHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---------CCceEEEEeecccccccccccccccccc-
Confidence 799999999999999999999999999999999999887652 2348999999999999999999999764
Q ss_pred cccCCCCceEEEEEcCcchH-HHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHH
Q 007831 247 RDAGYPDLRTLLCIGGVDMR-SQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD 325 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~-~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~ 325 (588)
+++++..++|+.... .....+..+++|+|+||++|.+++.....++.++++|||||+|.+..+++...+..++.
T Consensus 71 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~ 145 (169)
T PF00270_consen 71 -----TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILR 145 (169)
T ss_dssp -----TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHH
T ss_pred -----cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHH
Confidence 378899999988755 44455556799999999999999988666777899999999999999888888999988
Q ss_pred hhhh--cceeEEEecccchHHHH
Q 007831 326 HFKA--QRQTLLFSATMPTKIQN 346 (588)
Q Consensus 326 ~~~~--~~q~l~~SAT~~~~i~~ 346 (588)
.+.. ..|++++|||+++.+++
T Consensus 146 ~~~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 146 RLKRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp HSHTTTTSEEEEEESSSTHHHHH
T ss_pred HhcCCCCCcEEEEeeCCChhHhh
Confidence 8754 48899999999977654
No 103
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=6.3e-25 Score=230.30 Aligned_cols=315 Identities=23% Similarity=0.337 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.++++|.+++..+. +|-+.|+...+|.|||+. .+.++.++.... .-+||. ||+||...|.+ |.++|.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~------~~~GPf-LVi~P~StL~N-W~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK------GIPGPF-LVIAPKSTLDN-WMNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc------CCCCCe-EEEeeHhhHHH-HHHHHH
Confidence 68999999998876 788999999999999966 345555544321 125665 99999988866 566799
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHH-H-H-hcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcH
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLE-V-V-KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 317 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~-~-l-~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 317 (588)
+|+ |++++++++|+...+.... . + ....+|+|||++..+.- +..+.--.++|+|||||||+.+..
T Consensus 238 rf~--------P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~-- 305 (971)
T KOG0385|consen 238 RFT--------PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK-- 305 (971)
T ss_pred HhC--------CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--
Confidence 996 5899999999854333221 1 1 23689999999876433 223334467899999999999876
Q ss_pred HHHHHHHHhhhhcceeEEEecccc-hHHHHH-------------------------------------------------
Q 007831 318 DDIREVFDHFKAQRQTLLFSATMP-TKIQNF------------------------------------------------- 347 (588)
Q Consensus 318 ~~i~~i~~~~~~~~q~l~~SAT~~-~~i~~~------------------------------------------------- 347 (588)
..+..+++.+.... .+++|+|+- +++.++
T Consensus 306 s~L~~~lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 306 SKLSKILREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred hHHHHHHHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 56667788776555 477788861 110000
Q ss_pred ---HHHhcCC--CeEEEecC---------------------CCC-----------------------------ccc-ceE
Q 007831 348 ---ARSALVK--PVTVNVGR---------------------AGA-----------------------------ANL-DVI 371 (588)
Q Consensus 348 ---~~~~l~~--p~~i~~~~---------------------~~~-----------------------------~~~-~~~ 371 (588)
+...+.. -+.+.++. .+. ... ...
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 0000000 01111110 000 000 000
Q ss_pred EEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC---cEEE
Q 007831 372 QEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK---KDVL 448 (588)
Q Consensus 372 ~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~---~~vL 448 (588)
..+.......-+..|+..|.+.+++||||.......+.+.+|+..+++.+..+.|.++.++|..+++.|.... .-+|
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 0000111223467788888899999999999999999999999999999999999999999999999999643 5579
Q ss_pred EEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCC
Q 007831 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~ 501 (588)
++|.+.+.|||+..+++||.||..|+|..-.|...||+|.|++..+ +-|++.+
T Consensus 545 LSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred EeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999999999988755 4456665
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=1.1e-22 Score=228.66 Aligned_cols=319 Identities=21% Similarity=0.215 Sum_probs=213.8
Q ss_pred CcHHHHHHHHHHhcC---C-CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 166 PTPIQVQGLPVVLSG---R-DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 166 p~~~Q~~~i~~il~g---~-dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+++.|..++..+++. . .+++.||||+|||.+.+++++..+... ....++++++.|++.+++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------IKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------ccccceEEEEccHHHHHHHHHHHHHh
Confidence 489999999988843 4 788999999999999999988765441 12578999999999999999999998
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHH--------------HhcCCcEEEeChHHHHHHHHcc-cCC-C--CCccee
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEV--------------VKRGVHIVVATPGRLKDMLAKK-KMN-L--DNCRYL 303 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~--------------l~~~~~IvV~Tp~~L~~~l~~~-~~~-l--~~~~~l 303 (588)
++... .......+|.....-.... ......+.++||-.+....... ... + -..+++
T Consensus 269 ~~~~~------~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~v 342 (733)
T COG1203 269 IFGLF------SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLV 342 (733)
T ss_pred hhccc------ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhch
Confidence 76432 1111112222211100000 0012456666666554422221 111 1 123579
Q ss_pred EecCcccccccCcHHHHHHHHHhh-hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCC---cccceEEEeeehhh
Q 007831 304 TLDEADRLVDLGFEDDIREVFDHF-KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA---ANLDVIQEVEYVKQ 379 (588)
Q Consensus 304 ViDEah~l~~~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~---~~~~~~~~~~~~~~ 379 (588)
|+||+|.+.+......+..++..+ .....+|++|||+|+.....+...+.+...+....... ....+.+. ....-
T Consensus 343 IlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~ 421 (733)
T COG1203 343 ILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK-ERVDV 421 (733)
T ss_pred hhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc-cchhh
Confidence 999999998763222233333332 23567999999999999999888877655443321100 00111111 11111
Q ss_pred HHH----HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh----cCCcEEEEEc
Q 007831 380 EAK----IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK----AGKKDVLVAT 451 (588)
Q Consensus 380 ~~k----~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~----~g~~~vLVaT 451 (588)
... ...+...-.+.+.+++|.|||+..|..+++.|+..+..+..+||.+...+|.+.++.++ .+...|+|||
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaT 501 (733)
T COG1203 422 EDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVAT 501 (733)
T ss_pred hhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEe
Confidence 111 11122222345789999999999999999999999888999999999999998888654 5788999999
Q ss_pred CccccCCCCCCcceEEecCCCCChhHHHHHhcccccCC--CccEEEEEecCC
Q 007831 452 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG--KTGIATTFINKN 501 (588)
Q Consensus 452 ~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g--~~g~~~~~~~~~ 501 (588)
++.+.|+|+ +.+++|-==. .+.+.+||+||++|.| ..|.++++....
T Consensus 502 QVIEagvDi-dfd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 502 QVIEAGVDI-DFDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred eEEEEEecc-ccCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 999999999 5888876544 4899999999999999 667777777655
No 105
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=2.7e-21 Score=212.90 Aligned_cols=110 Identities=26% Similarity=0.396 Sum_probs=104.6
Q ss_pred hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC
Q 007831 391 QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470 (588)
Q Consensus 391 ~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~ 470 (588)
.+.+.++||||+++..++.++++|...|+.+..+||++++.+|..+++.|+.|+++|||||+.+++|+|+|++++||++|
T Consensus 439 ~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 439 VARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred HcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -----CCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 471 -----MPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 471 -----~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
.|.+...|+||+|||||. ..|.+++|++..
T Consensus 519 adifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 899999999999999998 689999999876
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=8.8e-23 Score=224.38 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=112.5
Q ss_pred eehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc
Q 007831 375 EYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT 451 (588)
Q Consensus 375 ~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT 451 (588)
.|.....|+..++..+ ...+.|+||||+|+..++.++++|...|+++..+|+ .+.+|+..+..|+.+...|+|||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3445566777777766 346889999999999999999999999999999997 68899999999999999999999
Q ss_pred CccccCCCCC---Ccc-----eEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 452 DVASKGLDFP---DIQ-----HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 452 ~~~~~GlDip---~v~-----~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
++++||+||+ +|. +||++..|.|...|.|++|||||.|.+|.+.+|++.++
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 9999999999 554 35999999999999999999999999999999999874
No 107
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=7.1e-23 Score=224.61 Aligned_cols=366 Identities=23% Similarity=0.326 Sum_probs=240.3
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcC---eEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----
Q 007831 106 TGWKPPLPIRRMSKKACDLIRKQWH---IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL---- 178 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~r~~~~---i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il---- 178 (588)
..|.....|..+...+++.+..+-. .+-.+...-+.-..|..+...+..+. | ..++.+|.++++.++
T Consensus 314 ~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LRdyQLeGlNWl~~~W~ 387 (1373)
T KOG0384|consen 314 CTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG-----G-NELRDYQLEGLNWLLYSWY 387 (1373)
T ss_pred ccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc-----c-chhhhhhcccchhHHHHHH
Confidence 4555544444444445555433321 11222233233334554444444333 2 689999999999987
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.+.++|+...+|.|||+- .+..|..+.+... -.|| .|||+|...+.. |.+.|..+. .+++++
T Consensus 388 ~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~------~~gp-flvvvplst~~~-W~~ef~~w~---------~mn~i~ 449 (1373)
T KOG0384|consen 388 KRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ------IHGP-FLVVVPLSTITA-WEREFETWT---------DMNVIV 449 (1373)
T ss_pred hcccceehhhcCCCcchH-HHHHHHHHHHhhh------ccCC-eEEEeehhhhHH-HHHHHHHHh---------hhceee
Confidence 689999999999999954 3444555444321 1455 499999977655 566688875 689999
Q ss_pred EEcCcchHHHHHHHh---c------CCcEEEeChHHHHHHHHcccCCCC--CcceeEecCcccccccCcHHHHHHHHHhh
Q 007831 259 CIGGVDMRSQLEVVK---R------GVHIVVATPGRLKDMLAKKKMNLD--NCRYLTLDEADRLVDLGFEDDIREVFDHF 327 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~---~------~~~IvV~Tp~~L~~~l~~~~~~l~--~~~~lViDEah~l~~~~~~~~i~~i~~~~ 327 (588)
++|....++.+.... . ..+++++|++.++ +..-.|+ .+.+++|||||++.+.. ..+-..+..+
T Consensus 450 y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~L----kDk~~L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f 523 (1373)
T KOG0384|consen 450 YHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL----KDKAELSKIPWRYLLVDEAHRLKNDE--SKLYESLNQF 523 (1373)
T ss_pred eecchhHHHHHHHHHheecCCccccccceeehhhHHHh----ccHhhhccCCcceeeecHHhhcCchH--HHHHHHHHHh
Confidence 999887766655432 1 3789999997663 2222233 45689999999998643 4444445555
Q ss_pred hhcceeEEEecccc-hHHHHHHH------------------------------------Hhc-------------CCCeE
Q 007831 328 KAQRQTLLFSATMP-TKIQNFAR------------------------------------SAL-------------VKPVT 357 (588)
Q Consensus 328 ~~~~q~l~~SAT~~-~~i~~~~~------------------------------------~~l-------------~~p~~ 357 (588)
.... .|++|.|+- +.+.++.. -++ .++..
T Consensus 524 ~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~ 602 (1373)
T KOG0384|consen 524 KMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEET 602 (1373)
T ss_pred cccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcce
Confidence 5444 466777752 12211110 000 00000
Q ss_pred E-Ee-----------------------cCCCC--cccceEEEe-------eeh-hh-------------HHH--------
Q 007831 358 V-NV-----------------------GRAGA--ANLDVIQEV-------EYV-KQ-------------EAK-------- 382 (588)
Q Consensus 358 i-~~-----------------------~~~~~--~~~~~~~~~-------~~~-~~-------------~~k-------- 382 (588)
| .+ +..+. ...++..++ ..+ .. +..
T Consensus 603 IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sS 682 (1373)
T KOG0384|consen 603 ILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSS 682 (1373)
T ss_pred EEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhc
Confidence 0 00 00000 000000000 000 00 011
Q ss_pred -----HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc---CCcEEEEEcCcc
Q 007831 383 -----IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA---GKKDVLVATDVA 454 (588)
Q Consensus 383 -----~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~---g~~~vLVaT~~~ 454 (588)
+..|+..|.+.+++||||...+...+.|++||..++|++-.+.|....+-|..+++.|.. ....+|+||.+.
T Consensus 683 GKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAG 762 (1373)
T KOG0384|consen 683 GKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAG 762 (1373)
T ss_pred CcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccC
Confidence 344555667788999999999999999999999999999999999999999999999984 457799999999
Q ss_pred ccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccE--EEEEecCCC
Q 007831 455 SKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI--ATTFINKNQ 502 (588)
Q Consensus 455 ~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~--~~~~~~~~~ 502 (588)
+.|||+..+++||+||..|+|.+-+|...||+|.|++.. ++-|++.+.
T Consensus 763 GLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 763 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999999999999999999998865 466788774
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.1e-21 Score=212.40 Aligned_cols=288 Identities=24% Similarity=0.371 Sum_probs=202.6
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 153 PILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 153 ~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+.+.+.+. |+ .|+..|+-....++.|++.-++||||.|||..-++..+-.. ..|.++++|+||..|
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-----------~kgkr~yii~PT~~L 137 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-----------KKGKRVYIIVPTTTL 137 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-----------hcCCeEEEEecCHHH
Confidence 344566666 55 89999999999999999999999999999954443333221 257899999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHhc-CCcEEEeChHHHHHHHHcccCCCC--CcceeEe
Q 007831 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVKR-GVHIVVATPGRLKDMLAKKKMNLD--NCRYLTL 305 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l~--~~~~lVi 305 (588)
+.|+++.+.++..... ...+.++ +++..+.++.. ..+.+ +.||+|+|.+-|. ++.-.|. ++++|++
T Consensus 138 v~Q~~~kl~~~~e~~~---~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~----k~~e~L~~~kFdfifV 209 (1187)
T COG1110 138 VRQVYERLKKFAEDAG---SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLS----KRFEELSKLKFDFIFV 209 (1187)
T ss_pred HHHHHHHHHHHHhhcC---Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHH----hhHHHhcccCCCEEEE
Confidence 9999999999986542 2245555 67765555433 33433 6899999985443 3322233 6889999
Q ss_pred cCccccccc-----------CcHHH-------HHHHHHhh------------------------hhcceeEEEecccchH
Q 007831 306 DEADRLVDL-----------GFEDD-------IREVFDHF------------------------KAQRQTLLFSATMPTK 343 (588)
Q Consensus 306 DEah~l~~~-----------~~~~~-------i~~i~~~~------------------------~~~~q~l~~SAT~~~~ 343 (588)
|.+|.++.. ||... +..+...+ ....+++..|||..+.
T Consensus 210 DDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~r 289 (1187)
T COG1110 210 DDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPR 289 (1187)
T ss_pred ccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCC
Confidence 999987743 33321 11111111 0124789999998543
Q ss_pred H--HHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCc---cccHHHHHHHHHHcC
Q 007831 344 I--QNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN---KADVDDIHEYLLLKG 418 (588)
Q Consensus 344 i--~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s---~~~~~~l~~~L~~~g 418 (588)
- ..+.+.++. +.++.......++....... .-...+++.+.+.+...|||++. +..+++++++|+..|
T Consensus 290 g~R~~LfReLlg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~G 362 (1187)
T COG1110 290 GSRLKLFRELLG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHG 362 (1187)
T ss_pred CchHHHHHHHhC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcC
Confidence 2 234444443 23344333444454443333 33344555556666789999999 899999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc----CccccCCCCCC-cceEEecCCC
Q 007831 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT----DVASKGLDFPD-IQHVINYDMP 472 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT----~~~~~GlDip~-v~~VI~~~~p 472 (588)
+++..+|++. ...++.|..|++++||++ .++-||||+|. ++.+|+++.|
T Consensus 363 i~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 363 INAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ceEEEeeccc-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999999943 567999999999999987 46789999998 8899999999
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=2.6e-20 Score=206.62 Aligned_cols=134 Identities=23% Similarity=0.343 Sum_probs=114.5
Q ss_pred hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC
Q 007831 391 QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 470 (588)
Q Consensus 391 ~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~ 470 (588)
.+.+.++||||+++..++.+++.|...|+++..+||++++.+|..+++.|+.|++.|||||+++++|+|+|++++||+++
T Consensus 443 ~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred HhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C-----CCChhHHHHHhcccccCCCccEEEEEecCC--------CChhHHHHHHHHHHHhcccCchHH
Q 007831 471 M-----PAEIENYVHRIGRTGRCGKTGIATTFINKN--------QSETTLLDLKHLLQEAKQRIPPVL 525 (588)
Q Consensus 471 ~-----p~s~~~y~qriGRagR~g~~g~~~~~~~~~--------~~~~~~~~l~~~l~~~~~~~p~~l 525 (588)
. |.+...|+||+|||||. ..|.+++|++.. .+...+.++...+......+|...
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred CcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 5 78999999999999996 789999999853 123334444444455555566543
No 110
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.7e-21 Score=203.21 Aligned_cols=324 Identities=18% Similarity=0.235 Sum_probs=217.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007831 148 MRFPEPILKKLKAKGIVQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 148 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+.+|..|.. .+.++|+.++..+. ++..-|+...+|.|||+. .+..|..+.+.. .--..+|
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~-------k~~~paL 259 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG-------KLTKPAL 259 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc-------cccCceE
Confidence 456666544 56899999999876 566789999999999954 344444444431 1124689
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcch--------HHHHHH-----HhcCCcEEEeChHHHHHHH
Q 007831 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM--------RSQLEV-----VKRGVHIVVATPGRLKDML 290 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--------~~~~~~-----l~~~~~IvV~Tp~~L~~~l 290 (588)
||||. .+..||.+++..| +|.+++.+++|..+. ...... ...+.+|+|+|++.+.-.
T Consensus 260 IVCP~-Tii~qW~~E~~~w--------~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~- 329 (923)
T KOG0387|consen 260 IVCPA-TIIHQWMKEFQTW--------WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ- 329 (923)
T ss_pred EEccH-HHHHHHHHHHHHh--------CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-
Confidence 99998 6778889999998 468899999875442 111111 122468999999777322
Q ss_pred HcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccc-hHHHHH----------------------
Q 007831 291 AKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP-TKIQNF---------------------- 347 (588)
Q Consensus 291 ~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~-~~i~~~---------------------- 347 (588)
...+.-..++|+|+||.|++.+.+ .++...+..++.. +.+++|+|+- +++.++
T Consensus 330 -~d~l~~~~W~y~ILDEGH~IrNpn--s~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f 405 (923)
T KOG0387|consen 330 -GDDLLGILWDYVILDEGHRIRNPN--SKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNF 405 (923)
T ss_pred -CcccccccccEEEecCcccccCCc--cHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhh
Confidence 223334567899999999998866 5555555555433 3466677751 111110
Q ss_pred --------------------------------------------------------------------------------
Q 007831 348 -------------------------------------------------------------------------------- 347 (588)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (588)
T Consensus 406 ~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i 485 (923)
T KOG0387|consen 406 EHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI 485 (923)
T ss_pred hhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH
Confidence
Q ss_pred -------------HHHhcCCCeEEEecC-CCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHH
Q 007831 348 -------------ARSALVKPVTVNVGR-AGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEY 413 (588)
Q Consensus 348 -------------~~~~l~~p~~i~~~~-~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~ 413 (588)
+++.+..|..+.-.. .....++..-.+........+..++....+.+.++|+|..++...+.+...
T Consensus 486 ~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~f 565 (923)
T KOG0387|consen 486 LNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESF 565 (923)
T ss_pred HcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHH
Confidence 000000110000000 000000000000111122334445555556788999999999999999999
Q ss_pred HH-HcCCcEEEEeCCCCHHHHHHHHHHHhcCCc--EEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCC
Q 007831 414 LL-LKGVEAVAVHGGKDQEEREYAISSFKAGKK--DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 414 L~-~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~--~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~ 490 (588)
|. ..||.+..+.|..+...|..+++.|+++.. -+|++|.+.+.|+|+.+++-||.||+.|+|..-.|..-||-|.|+
T Consensus 566 L~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 566 LRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred HHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 98 689999999999999999999999997753 368899999999999999999999999999999999999999998
Q ss_pred ccEEEE--EecCC
Q 007831 491 TGIATT--FINKN 501 (588)
Q Consensus 491 ~g~~~~--~~~~~ 501 (588)
+..+++ |++..
T Consensus 646 kkdV~VYRL~t~g 658 (923)
T KOG0387|consen 646 KKDVVVYRLMTAG 658 (923)
T ss_pred ccceEEEEEecCC
Confidence 765544 45544
No 111
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=7.4e-20 Score=209.97 Aligned_cols=332 Identities=19% Similarity=0.215 Sum_probs=204.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007831 151 PEPILKKLKAKGIVQPTPIQVQGLP----VVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~----~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
++.+.+.+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++..+. .+.+++|.+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----------~~~~vvi~t 299 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----------TEKPVVIST 299 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----------CCCeEEEEe
Confidence 34667777777885 8999998766 4447899999999999999999999987643 245799999
Q ss_pred CCHHHHHHHHH-HHHHHhhcccccCCCCceEEEEEcCcch----------------------------------------
Q 007831 227 PSRELARQTYE-VVEQFLTPMRDAGYPDLRTLLCIGGVDM---------------------------------------- 265 (588)
Q Consensus 227 Ptr~La~Q~~~-~~~~~~~~~~~~~~~~i~~~~~~gg~~~---------------------------------------- 265 (588)
||++|..|+.. .+..+.+.+. ..++++++.|+.+.
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~----~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~e 375 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILN----FKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDE 375 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcC----CCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhh
Confidence 99999999865 4554433220 13555555553321
Q ss_pred -------------------------------HHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccccccc
Q 007831 266 -------------------------------RSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 266 -------------------------------~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~ 314 (588)
..........++|||++...|.+.+......+....++||||||++.+.
T Consensus 376 l~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 376 LNLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDI 455 (850)
T ss_pred ccCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHH
Confidence 0000111124789999998887766443333455679999999998641
Q ss_pred C-------c-----HHH---H-----------------------------------------------------------
Q 007831 315 G-------F-----EDD---I----------------------------------------------------------- 320 (588)
Q Consensus 315 ~-------~-----~~~---i----------------------------------------------------------- 320 (588)
. + ... +
T Consensus 456 a~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 535 (850)
T TIGR01407 456 AENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVD 535 (850)
T ss_pred HHHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 0 000 0
Q ss_pred --HHHHHh-----------h-------------------------------------hhcceeEEEecccchH-HHHHHH
Q 007831 321 --REVFDH-----------F-------------------------------------KAQRQTLLFSATMPTK-IQNFAR 349 (588)
Q Consensus 321 --~~i~~~-----------~-------------------------------------~~~~q~l~~SAT~~~~-i~~~~~ 349 (588)
...+.. + +....+|++|||+... -.++..
T Consensus 536 ~l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~ 615 (850)
T TIGR01407 536 QLRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFP 615 (850)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHH
Confidence 000000 0 0012578999999632 123333
Q ss_pred HhcCCC--eEEEec-CCCC--cccc--eEEEee---ehhhHH---H-HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHH
Q 007831 350 SALVKP--VTVNVG-RAGA--ANLD--VIQEVE---YVKQEA---K-IVYLLECLQKTPPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 350 ~~l~~p--~~i~~~-~~~~--~~~~--~~~~~~---~~~~~~---k-~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~ 415 (588)
..+.-+ ...... .... .+.. +...+. ....+. . ...+.+.+...++++|||++|....+.++..|.
T Consensus 616 ~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~ 695 (850)
T TIGR01407 616 QLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLN 695 (850)
T ss_pred HhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHh
Confidence 333321 111111 1101 0000 000010 011121 1 222333444567799999999999999999997
Q ss_pred H----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcc--eEEecCCCCC---------------
Q 007831 416 L----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ--HVINYDMPAE--------------- 474 (588)
Q Consensus 416 ~----~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~--~VI~~~~p~s--------------- 474 (588)
. .++. ++..+.. ..|..+++.|++|+..||++|+.+++|||+|+.. +||...+|..
T Consensus 696 ~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~ 772 (850)
T TIGR01407 696 ELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLE 772 (850)
T ss_pred hhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 5 2444 3334433 5788999999999999999999999999999966 5777777731
Q ss_pred ---------------hhHHHHHhcccccCCCccEEEEEecCC
Q 007831 475 ---------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 475 ---------------~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+..+.|.+||.-|.....-++++++..
T Consensus 773 ~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 773 QEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 123568899999987655556666554
No 112
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=6e-20 Score=197.02 Aligned_cols=314 Identities=22% Similarity=0.243 Sum_probs=221.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|.-+.-.++.|+ |..+.||+|||+++.+|++..++. |..+.|++|+..||.|-++.+..
T Consensus 76 g~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----------G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-----------GRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred CC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-----------CCCeEEEcCCHHHHHHHHHHHHH
Confidence 54 78999999999998875 779999999999999999877654 67799999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHc------ccCCCCCcceeEecCcccccc-
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAK------KKMNLDNCRYLTLDEADRLVD- 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~------~~~~l~~~~~lViDEah~l~~- 313 (588)
++..+ ++++.++.++.+..+....+ .++|+++|...| .|.|.. .......+.+.||||+|.++-
T Consensus 142 ly~~L------GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID 213 (764)
T PRK12326 142 LYEAL------GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD 213 (764)
T ss_pred HHHhc------CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec
Confidence 99877 99999999987766554444 479999998765 123322 223356688999999998751
Q ss_pred c--------------CcHHHHHHHHHhhhhc-------------------------------------------------
Q 007831 314 L--------------GFEDDIREVFDHFKAQ------------------------------------------------- 330 (588)
Q Consensus 314 ~--------------~~~~~i~~i~~~~~~~------------------------------------------------- 330 (588)
. .....+..+...+...
T Consensus 214 eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~ 293 (764)
T PRK12326 214 EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALH 293 (764)
T ss_pred cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHH
Confidence 0 0001111111111100
Q ss_pred ---------------------------------------------------------------------ceeEEEecccc
Q 007831 331 ---------------------------------------------------------------------RQTLLFSATMP 341 (588)
Q Consensus 331 ---------------------------------------------------------------------~q~l~~SAT~~ 341 (588)
..+.+||+|..
T Consensus 294 A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~ 373 (764)
T PRK12326 294 AHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAV 373 (764)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCCh
Confidence 12345666655
Q ss_pred hHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcC
Q 007831 342 TKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKG 418 (588)
Q Consensus 342 ~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g 418 (588)
....+|.+.+-..-+.+.. ..+....+ .....+.....|+..+++.+ .+.+.||||.+.|....+.++..|...|
T Consensus 374 t~~~Ef~~iY~l~Vv~IPt-nkp~~R~d-~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g 451 (764)
T PRK12326 374 AAGEQLRQFYDLGVSVIPP-NKPNIRED-EADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG 451 (764)
T ss_pred hHHHHHHHHhCCcEEECCC-CCCceeec-CCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 4444444444332221111 11111111 12234455667777776655 3578899999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCC-cEEEEEcCccccCCCCCC---------------cceEEecCCCCChhHHHHHh
Q 007831 419 VEAVAVHGGKDQEEREYAISSFKAGK-KDVLVATDVASKGLDFPD---------------IQHVINYDMPAEIENYVHRI 482 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~-~~vLVaT~~~~~GlDip~---------------v~~VI~~~~p~s~~~y~qri 482 (588)
++...+++.-...+ ..++. ..|+ -.|-|||++++||.||.= ==|||-...+.|..--.|-.
T Consensus 452 I~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 452 VPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 99999998754333 22222 2453 468999999999999962 23788888999999999999
Q ss_pred cccccCCCccEEEEEecCCC
Q 007831 483 GRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 483 GRagR~g~~g~~~~~~~~~~ 502 (588)
||+||.|.+|.+..|++-++
T Consensus 529 GRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred cccccCCCCCceeEEEEcch
Confidence 99999999999999998773
No 113
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=5.9e-20 Score=203.33 Aligned_cols=307 Identities=22% Similarity=0.270 Sum_probs=208.8
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccc
Q 007831 168 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMR 247 (588)
Q Consensus 168 ~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~ 247 (588)
....+.+..+.+..-+|++|+||||||.. +|.+. ++... +.+..+.+.-|.|--|..+++.+.+-+..-
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~l--le~g~------~~~g~I~~tQPRRlAArsvA~RvAeel~~~- 121 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFL--LEEGL------GIAGKIGCTQPRRLAARSVAERVAEELGEK- 121 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHH--Hhhhc------ccCCeEEecCchHHHHHHHHHHHHHHhCCC-
Confidence 34444555666778899999999999954 55432 22211 245577888899988888887777654321
Q ss_pred ccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccccc-ccCcH-HHHHHHHH
Q 007831 248 DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV-DLGFE-DDIREVFD 325 (588)
Q Consensus 248 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~-~~~~~-~~i~~i~~ 325 (588)
++-.|++-+-..+.. .....|-++|.|.|...+..... |+.+++|||||||.=. +-.|. ..+..++.
T Consensus 122 ----~G~~VGY~iRfe~~~------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~ 190 (845)
T COG1643 122 ----LGETVGYSIRFESKV------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLA 190 (845)
T ss_pred ----cCceeeEEEEeeccC------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHh
Confidence 133344333221111 12368999999999998876554 8999999999999722 11111 12344455
Q ss_pred hhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehh---hHHHHHHHH-HHhhcCCCCEEEEe
Q 007831 326 HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK---QEAKIVYLL-ECLQKTPPPVLIFC 401 (588)
Q Consensus 326 ~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~---~~~k~~~ll-~~l~~~~~~viIF~ 401 (588)
..+.+-++|.||||+... .|...+-.-|+...-++.. ...+.+...... -++.+...+ ..+.+..+.+|||.
T Consensus 191 ~rr~DLKiIimSATld~~--rfs~~f~~apvi~i~GR~f--PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFL 266 (845)
T COG1643 191 RRRDDLKLIIMSATLDAE--RFSAYFGNAPVIEIEGRTY--PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFL 266 (845)
T ss_pred hcCCCceEEEEecccCHH--HHHHHcCCCCEEEecCCcc--ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEEC
Confidence 555567899999999865 4444433345544333321 112211111111 122222222 33345678999999
Q ss_pred CccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC------
Q 007831 402 ENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM------ 471 (588)
Q Consensus 402 ~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~------ 471 (588)
+...+.+.+++.|.. ..+.+.-+||.++.+++.++++---.|+.+|++||++++.+|.||+|+.||.-+.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999999999988 3477888999999999999877777777779999999999999999999996554
Q ss_pred ------------CCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 472 ------------PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 472 ------------p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|-|-.+..||.|||||- .+|.|+-+++++
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~ 387 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEE 387 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHH
Confidence 34677889999999998 589999999864
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.4e-19 Score=195.79 Aligned_cols=311 Identities=22% Similarity=0.287 Sum_probs=209.4
Q ss_pred CCCCcHHHHHHHHHHhcC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVLSG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g----~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
...+++-|..++..+.+. ...++.+-||||||.+|+-.+-..+ . .|..+|||+|-.+|-.|+.+.
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~----------~GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-A----------QGKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-H----------cCCEEEEEeccccchHHHHHH
Confidence 346788999999999855 6789999999999999876655444 3 578999999999999999999
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccccccc
Q 007831 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~ 314 (588)
|+..+ +.++..++++.+..+....+. ..+.|||+|--.+ ...+.++.+|||||=|--.-.
T Consensus 265 f~~rF---------g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYK 328 (730)
T COG1198 265 FKARF---------GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYK 328 (730)
T ss_pred HHHHh---------CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEecccccccc
Confidence 99987 577888998888766654443 4689999994322 345789999999999974421
Q ss_pred ---C--cHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHH-----HHH
Q 007831 315 ---G--FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-----KIV 384 (588)
Q Consensus 315 ---~--~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-----k~~ 384 (588)
+ +...=-.++..-..++++|+-|||+.=+....+..-...... ...+.+.+...-...+....... --.
T Consensus 329 q~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~-L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 329 QEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLR-LTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred CCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEE-ccccccccCCCcceEEeccccccccCccCCH
Confidence 1 111222333444457789999999876544444222111111 11222211111111111111100 012
Q ss_pred HHHHHh---hcCCCCEEEEeCccc--------------------------------------------------------
Q 007831 385 YLLECL---QKTPPPVLIFCENKA-------------------------------------------------------- 405 (588)
Q Consensus 385 ~ll~~l---~~~~~~viIF~~s~~-------------------------------------------------------- 405 (588)
.+++.+ .+.+.++|+|.|.+-
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 233333 335678888887752
Q ss_pred ----cHHHHHHHHHHc--CCcEEEEeCCCCHH--HHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCC----
Q 007831 406 ----DVDDIHEYLLLK--GVEAVAVHGGKDQE--EREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA---- 473 (588)
Q Consensus 406 ----~~~~l~~~L~~~--g~~~~~ihg~~~~~--~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~---- 473 (588)
..+.+.+.|... +.++..+.++.... .-...+..|.+|+.+|||.|.+++.|.|+|+++.|...|...
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 255666666554 66778888876543 346779999999999999999999999999999977555431
Q ss_pred --------ChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 474 --------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 474 --------s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
...-+.|-.|||||.+.+|.+++=...-
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 2445788999999998888776655433
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=1.9e-19 Score=200.55 Aligned_cols=296 Identities=15% Similarity=0.146 Sum_probs=180.1
Q ss_pred CcHHHHHHHHHHh----c------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007831 166 PTPIQVQGLPVVL----S------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 166 p~~~Q~~~i~~il----~------g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
|+++|..|+..+. . .+..+++++||||||++.+..+...+ .. ...+++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--------~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--------LKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--------cCCCeEEEEECcHHHHHHH
Confidence 6889999998865 2 25799999999999988766554333 21 3578999999999999999
Q ss_pred HHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc-CCcEEEeChHHHHHHHHcc--cCCCCCc-ceeEecCcccc
Q 007831 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR-GVHIVVATPGRLKDMLAKK--KMNLDNC-RYLTLDEADRL 311 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~--~~~l~~~-~~lViDEah~l 311 (588)
.+.|..+.... . .+..+...-...+.. ...|+|+|.++|...+... ....... -+||+||||+.
T Consensus 310 ~~~f~~~~~~~-------~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs 377 (667)
T TIGR00348 310 MKEFQSLQKDC-------A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRS 377 (667)
T ss_pred HHHHHhhCCCC-------C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccc
Confidence 99999884210 0 111122222222322 3689999999997644321 1111111 28999999996
Q ss_pred cccCcHHHHHHHH-HhhhhcceeEEEecccchHHHHHHHHhcC---CCeEEEecCCCC----cccceEEEeee----h--
Q 007831 312 VDLGFEDDIREVF-DHFKAQRQTLLFSATMPTKIQNFARSALV---KPVTVNVGRAGA----ANLDVIQEVEY----V-- 377 (588)
Q Consensus 312 ~~~~~~~~i~~i~-~~~~~~~q~l~~SAT~~~~i~~~~~~~l~---~p~~i~~~~~~~----~~~~~~~~~~~----~-- 377 (588)
... .+...+ ..++ ....++|||||-..........+. ..+........+ ....+...... .
T Consensus 378 ~~~----~~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~ 452 (667)
T TIGR00348 378 QYG----ELAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDR 452 (667)
T ss_pred cch----HHHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccCh
Confidence 532 333333 3444 456999999995321100001111 011111000000 00000000000 0
Q ss_pred ------------------hh-------------------HHHHHH----HHHHh----hcCCCCEEEEeCccccHHHHHH
Q 007831 378 ------------------KQ-------------------EAKIVY----LLECL----QKTPPPVLIFCENKADVDDIHE 412 (588)
Q Consensus 378 ------------------~~-------------------~~k~~~----ll~~l----~~~~~~viIF~~s~~~~~~l~~ 412 (588)
.. +..+.. +++.. ...+.+++|||.++..|..+++
T Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~ 532 (667)
T TIGR00348 453 KKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKN 532 (667)
T ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHH
Confidence 00 000111 11111 1124799999999999999999
Q ss_pred HHHHc-----CCcEEEEeCCCCHH---------------------HHHHHHHHHhc-CCcEEEEEcCccccCCCCCCcce
Q 007831 413 YLLLK-----GVEAVAVHGGKDQE---------------------EREYAISSFKA-GKKDVLVATDVASKGLDFPDIQH 465 (588)
Q Consensus 413 ~L~~~-----g~~~~~ihg~~~~~---------------------~R~~~~~~f~~-g~~~vLVaT~~~~~GlDip~v~~ 465 (588)
.|... +..++.+++..+.. ....++++|++ +..+|||.++++..|+|.|.+++
T Consensus 533 ~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~t 612 (667)
T TIGR00348 533 ALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNT 612 (667)
T ss_pred HHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccce
Confidence 88654 34566677654332 12468889976 68899999999999999999999
Q ss_pred EEecCCCCChhHHHHHhcccccC
Q 007831 466 VINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 466 VI~~~~p~s~~~y~qriGRagR~ 488 (588)
++...+-.+ ..++|.+||+.|.
T Consensus 613 LyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 613 LYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEeccccc-cHHHHHHHHhccc
Confidence 987775554 4689999999993
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=4.5e-20 Score=197.52 Aligned_cols=293 Identities=22% Similarity=0.289 Sum_probs=195.2
Q ss_pred CCCcHHHHHHHHHHh----cC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVL----SG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
..|+.+|..||..+. .| +.++++|.||+|||..++- ++..++.. +...++|+|+-+++|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~--------~~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS--------GWVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc--------chhheeeEEechHHHHHHHHHH
Confidence 468999999998765 34 4599999999999987644 44444442 3567899999999999999999
Q ss_pred HHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-----cCCCCCcceeEecCcccccc
Q 007831 239 VEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-----KMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-----~~~l~~~~~lViDEah~l~~ 313 (588)
+..+.. .-.......+.... ..++|.|+|++++...+... .+....+++||+|||||
T Consensus 235 f~~~~P--------~~~~~n~i~~~~~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR--- 296 (875)
T COG4096 235 FEDFLP--------FGTKMNKIEDKKGD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR--- 296 (875)
T ss_pred HHHhCC--------CccceeeeecccCC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh---
Confidence 999864 33333222221111 14799999999998887754 34455689999999999
Q ss_pred cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhc-CCCeE--------------------EEe--cCCCCcccc-
Q 007831 314 LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL-VKPVT--------------------VNV--GRAGAANLD- 369 (588)
Q Consensus 314 ~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l-~~p~~--------------------i~~--~~~~~~~~~- 369 (588)
|....++.|+.++....|.+ |||+...+..-.-.++ ..|+. +.. ...|.....
T Consensus 297 -gi~~~~~~I~dYFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ 373 (875)
T COG4096 297 -GIYSEWSSILDYFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAG 373 (875)
T ss_pred -hHHhhhHHHHHHHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCcc
Confidence 44567779999987775444 9998664332222222 22221 111 111110000
Q ss_pred ---------eE----EEee---------ehh-hHHHHHHHHHHhhc--C---CCCEEEEeCccccHHHHHHHHHHc----
Q 007831 370 ---------VI----QEVE---------YVK-QEAKIVYLLECLQK--T---PPPVLIFCENKADVDDIHEYLLLK---- 417 (588)
Q Consensus 370 ---------~~----~~~~---------~~~-~~~k~~~ll~~l~~--~---~~~viIF~~s~~~~~~l~~~L~~~---- 417 (588)
.+ +.+. ... .+.....+.+.+.. . .+++||||.+..+|+.+.+.|...
T Consensus 374 serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~ 453 (875)
T COG4096 374 SEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY 453 (875)
T ss_pred chhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc
Confidence 00 0000 000 11112222333333 2 469999999999999999999765
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhc--CCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccC
Q 007831 418 -GVEAVAVHGGKDQEEREYAISSFKA--GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 418 -g~~~~~ihg~~~~~~R~~~~~~f~~--g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~ 488 (588)
|--+..+.|.-.+. ...++.|.. .-.+|.|+.+++..|+|+|.|.++|++..-.|..-|.||+||+-|.
T Consensus 454 ~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 454 NGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 23355566654433 344666665 3356999999999999999999999999999999999999999885
No 117
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=1.5e-19 Score=171.55 Aligned_cols=187 Identities=37% Similarity=0.545 Sum_probs=154.5
Q ss_pred CCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007831 161 KGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.++..|+++|.+++..++.. +++++.++||+|||.++..+++..+... ....+||++|++.++.|+...+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------~~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---------KGKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---------CCCcEEEEeCCHHHHHHHHHHH
Confidence 46788999999999999988 9999999999999999988888776442 2457999999999999999999
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCC-cEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHH
Q 007831 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGV-HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~-~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~ 318 (588)
..++... ........++.........+..+. +++++|++.+.+.+.........++++|+||+|.+....+..
T Consensus 75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 75 KKLGPSL------GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred HHHhccC------CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHH
Confidence 9886532 234455555655555666666666 999999999999988877777889999999999999766778
Q ss_pred HHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecC
Q 007831 319 DIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362 (588)
Q Consensus 319 ~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~ 362 (588)
.+..++..++...+++++|||+++........+..+.+.+....
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88889888877889999999999999888888888777666544
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.8e-19 Score=196.50 Aligned_cols=313 Identities=20% Similarity=0.241 Sum_probs=214.2
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.-+--.+..| -|..+.||+|||+++.+|++..++ .|..+-||+||..||.|-++.+..++
T Consensus 81 m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al-----------~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL-----------SGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH-----------cCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 46888898776666555 488999999999999999987664 36779999999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCccccc-ccC
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-DLG 315 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~-~~~ 315 (588)
..+ ++++.++.++.+..+....+. ++|+++|..-| .|.|..+ ......+.++||||+|.++ |..
T Consensus 148 ~~l------Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 148 EFL------GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred ccc------CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 877 999999998877666555444 89999998775 2333322 1234788999999999876 110
Q ss_pred ---------------cHHHHHHHHHhhhh--------------------c------------------------------
Q 007831 316 ---------------FEDDIREVFDHFKA--------------------Q------------------------------ 330 (588)
Q Consensus 316 ---------------~~~~i~~i~~~~~~--------------------~------------------------------ 330 (588)
....+..+...+.. .
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly 299 (913)
T PRK13103 220 RTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLY 299 (913)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhcc
Confidence 01111111111100 0
Q ss_pred --------------------------------------------------------------------------------
Q 007831 331 -------------------------------------------------------------------------------- 330 (588)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (588)
T Consensus 300 ~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (913)
T PRK13103 300 SAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQN 379 (913)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHH
Confidence
Q ss_pred -----ceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeC
Q 007831 331 -----RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCE 402 (588)
Q Consensus 331 -----~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~ 402 (588)
..+.+||+|....-.+|...+-..-+.|... .+....+ .....|.....|+..+++.+. +.+.||||-+.
T Consensus 380 fFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTn-kP~~R~D-~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~ 457 (913)
T PRK13103 380 YFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPN-KPLARKD-FNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTA 457 (913)
T ss_pred HHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCC-CCccccc-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0122333333322222222222211111111 1111111 112345556677777776554 57889999999
Q ss_pred ccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEEEEEcCccccCCCCC--------------------
Q 007831 403 NKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG-KKDVLVATDVASKGLDFP-------------------- 461 (588)
Q Consensus 403 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g-~~~vLVaT~~~~~GlDip-------------------- 461 (588)
|+...+.+++.|...|++.-+++......+-. ++. ..| .-.|-|||++++||.||.
T Consensus 458 SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~ 534 (913)
T PRK13103 458 TIETSEHMSNLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQI 534 (913)
T ss_pred CHHHHHHHHHHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHH
Confidence 99999999999999999988888764433322 222 355 456999999999999994
Q ss_pred -----------------CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 462 -----------------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 462 -----------------~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
+==|||--..+.|..---|-.||+||.|.+|.+-.|++-++
T Consensus 535 ~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 535 AQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22368888889999999999999999999999999998764
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=191.92 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=113.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|..||.+.+..+=.+...+++|||.+|||.+.-..+ ..+++. .....+|+++||++|++|+...+...+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLRe--------sD~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRE--------SDSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhh--------cCCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 4788999999999999999999999999997654444 334432 3567899999999999999988877652
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc---ccCCCCCcceeEecCcccccccCcHHHHH
Q 007831 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK---KKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~---~~~~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
.- .-.+-..+.|.....-+.. .-.|+|+|+-|+.+..+|.. .......++|+|+||+|.+..+.-...+.
T Consensus 582 ~~-----t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~E 654 (1330)
T KOG0949|consen 582 TK-----TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWE 654 (1330)
T ss_pred cC-----ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHH
Confidence 11 0112222333221111111 12589999999999888876 45567889999999999998754334555
Q ss_pred HHHHhhhhcceeEEEecccch
Q 007831 322 EVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~ 342 (588)
.++... .+.++++|||+.+
T Consensus 655 qll~li--~CP~L~LSATigN 673 (1330)
T KOG0949|consen 655 QLLLLI--PCPFLVLSATIGN 673 (1330)
T ss_pred HHHHhc--CCCeeEEecccCC
Confidence 555554 4669999999844
No 120
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.83 E-value=4.1e-19 Score=187.70 Aligned_cols=319 Identities=21% Similarity=0.241 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.+-++|.-++..+. .+-+.|+...+|.|||.. .++.+..+.+.. ..||. |||||+..|-+ |.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g-------~~gpH-LVVvPsSTleN-WlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG-------NPGPH-LVVVPSSTLEN-WLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC-------CCCCc-EEEecchhHHH-HHHHHH
Confidence 37899999998865 566789999999999944 556666665532 24554 99999988855 566799
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHH-cccCCCCCcceeEecCcccccccC
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLA-KKKMNLDNCRYLTLDEADRLVDLG 315 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~-~~~~~l~~~~~lViDEah~l~~~~ 315 (588)
+||+ .+++..++|....+..++... .+.+|+|+|+.-...--. +..+.-.++.|+|+||+|.+.+++
T Consensus 469 kwCP--------sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~ 540 (941)
T KOG0389|consen 469 KWCP--------SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT 540 (941)
T ss_pred HhCC--------ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc
Confidence 9974 789999999887666655432 268999999854321100 112234567899999999999875
Q ss_pred cHHHHHHHHHhhhhcceeEEEecccc-hHHHHH---------------------------------------------HH
Q 007831 316 FEDDIREVFDHFKAQRQTLLFSATMP-TKIQNF---------------------------------------------AR 349 (588)
Q Consensus 316 ~~~~i~~i~~~~~~~~q~l~~SAT~~-~~i~~~---------------------------------------------~~ 349 (588)
- ..++.+++- + ..+.|++|+|+- +++.++ ++
T Consensus 541 S-eRy~~LM~I-~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK 617 (941)
T KOG0389|consen 541 S-ERYKHLMSI-N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAK 617 (941)
T ss_pred h-HHHHHhccc-c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHH
Confidence 2 344443332 2 334577888851 000000 00
Q ss_pred H-------------hc---C-CCeEEEe---------------------------c--CCC---------CcccceEEEe
Q 007831 350 S-------------AL---V-KPVTVNV---------------------------G--RAG---------AANLDVIQEV 374 (588)
Q Consensus 350 ~-------------~l---~-~p~~i~~---------------------------~--~~~---------~~~~~~~~~~ 374 (588)
. .+ . +.-.|.. . ..+ .++..+..+.
T Consensus 618 ~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~ 697 (941)
T KOG0389|consen 618 TIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRS 697 (941)
T ss_pred HhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHH
Confidence 0 00 0 0000000 0 000 0000000000
Q ss_pred ee---------------------------------------------------------hhhH---HHHHHHHHHhhcCC
Q 007831 375 EY---------------------------------------------------------VKQE---AKIVYLLECLQKTP 394 (588)
Q Consensus 375 ~~---------------------------------------------------------~~~~---~k~~~ll~~l~~~~ 394 (588)
.| +-.. .++..|+..+++.+
T Consensus 698 ~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G 777 (941)
T KOG0389|consen 698 IYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG 777 (941)
T ss_pred hccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC
Confidence 00 0001 22344455556678
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--cEEEEEcCccccCCCCCCcceEEecCCC
Q 007831 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK--KDVLVATDVASKGLDFPDIQHVINYDMP 472 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~--~~vLVaT~~~~~GlDip~v~~VI~~~~p 472 (588)
.+||||..-....+.|..+|...++.+..+.|...-.+|+.+++.|...+ .-+|++|-+.+.|||+..+++||.||+.
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d 857 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID 857 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC
Confidence 89999999999999999999999999999999999999999999999765 4478999999999999999999999999
Q ss_pred CChhHHHHHhcccccCCCcc--EEEEEecCCCCh
Q 007831 473 AEIENYVHRIGRTGRCGKTG--IATTFINKNQSE 504 (588)
Q Consensus 473 ~s~~~y~qriGRagR~g~~g--~~~~~~~~~~~~ 504 (588)
.+|-+-.|.-.||+|.|++. .++.|++++.-+
T Consensus 858 FNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred CCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 99999999999999999876 456667777433
No 121
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.8e-19 Score=183.37 Aligned_cols=328 Identities=14% Similarity=0.102 Sum_probs=230.9
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007831 156 KKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 156 ~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
..++.+.-.....+|.++|..+-.|+++++...|.+||++++.+......... .....+++.|+.++++..
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---------~~s~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---------HATNSLLPSEMVEHLRNG 347 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---------cccceecchhHHHHhhcc
Confidence 34444555678999999999999999999999999999999999887665431 344579999999998875
Q ss_pred HHHHHHHhhcccccCCCCce--EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCC----CcceeEecCcc
Q 007831 236 YEVVEQFLTPMRDAGYPDLR--TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLD----NCRYLTLDEAD 309 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~--~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~----~~~~lViDEah 309 (588)
.+.+.-....+ |..+ ++-.+.+.+........+.+.+++++.|.........+..+.+ ...++++||+|
T Consensus 348 ~~~~~V~~~~I-----~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 348 SKGQVVHVEVI-----KARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred CCceEEEEEeh-----hhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 54332222111 1222 2223344444555566677899999999988776665544433 34679999999
Q ss_pred cccccCcH----HHHHHHHHhhh-----hcceeEEEecccchHHHHHHHHhcCCCeEE-EecCCCCcccceEEEeeeh--
Q 007831 310 RLVDLGFE----DDIREVFDHFK-----AQRQTLLFSATMPTKIQNFARSALVKPVTV-NVGRAGAANLDVIQEVEYV-- 377 (588)
Q Consensus 310 ~l~~~~~~----~~i~~i~~~~~-----~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i-~~~~~~~~~~~~~~~~~~~-- 377 (588)
.++.. |. .+++.+++.+. ...|++-.|||+-..++.....+-.+.+.+ ..+..... -...+.|.
T Consensus 423 ~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~---~K~~V~WNP~ 498 (1034)
T KOG4150|consen 423 LYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSS---EKLFVLWNPS 498 (1034)
T ss_pred eeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCc---cceEEEeCCC
Confidence 98754 33 34444444332 346889999999888765554443343332 22222111 11111111
Q ss_pred -------hhHHHHH---HHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc----CC----cEEEEeCCCCHHHHHHHHHH
Q 007831 378 -------KQEAKIV---YLLECLQKTPPPVLIFCENKADVDDIHEYLLLK----GV----EAVAVHGGKDQEEREYAISS 439 (588)
Q Consensus 378 -------~~~~k~~---~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~----g~----~~~~ihg~~~~~~R~~~~~~ 439 (588)
..+.++. .++..+...+-++|.||++++-|+.+....+.. |- .+..|.||.+.++|..+...
T Consensus 499 ~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~ 578 (1034)
T KOG4150|consen 499 APPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESD 578 (1034)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHH
Confidence 1122222 233344456779999999999999877655432 21 35678999999999999999
Q ss_pred HhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 440 f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+-.|+..-+|||++++.|||+.+++.|++.++|.|+.++.|..|||||.++...++.+....
T Consensus 579 ~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 579 LFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999998887777554
No 122
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2.5e-19 Score=181.58 Aligned_cols=337 Identities=20% Similarity=0.261 Sum_probs=236.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecC-CchH--hHHHHHHHHHHHHhhcccCCC--------------------CCCCCC
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFT-GSGK--TLVFVLPMIMIAMHEEMMMPI--------------------VPGEGP 220 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~T-GsGK--Tl~~~lp~l~~~~~~~~~~~~--------------------~~~~~~ 220 (588)
..+|+.|.+.+..+.+.+|++..-.| +.|+ +-+|+|.+|+|++.....--. ..-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 56799999999999999999876333 3444 678999999998764321000 001268
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccc-----cCCCCce--------------------EEEEEcCcch--------H-
Q 007831 221 FCLIVCPSRELARQTYEVVEQFLTPMRD-----AGYPDLR--------------------TLLCIGGVDM--------R- 266 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~-----~~~~~i~--------------------~~~~~gg~~~--------~- 266 (588)
+||||||+|+-|..+...+..++....+ ++...+. -.++.|.++. .
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999999888554432 0100000 0011111110 0
Q ss_pred HHHHHH--hcCCcEEEeChHHHHHHHHcc------cCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhc--------
Q 007831 267 SQLEVV--KRGVHIVVATPGRLKDMLAKK------KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-------- 330 (588)
Q Consensus 267 ~~~~~l--~~~~~IvV~Tp~~L~~~l~~~------~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~-------- 330 (588)
..+... ...+||+||+|-.|..++... .-.|+++.++|||.||.|+..+| +.+..|+.++...
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 000111 114899999999998888732 23488999999999999998877 6677777776432
Q ss_pred ----------------ceeEEEecccchHHHHHHHHhcCCCeE-EE---e---cCCCCcccceEEEeeeh-------hhH
Q 007831 331 ----------------RQTLLFSATMPTKIQNFARSALVKPVT-VN---V---GRAGAANLDVIQEVEYV-------KQE 380 (588)
Q Consensus 331 ----------------~q~l~~SAT~~~~i~~~~~~~l~~p~~-i~---~---~~~~~~~~~~~~~~~~~-------~~~ 380 (588)
+|+++||+--.+.+..+...++.+..- +. + +..+.....+.|.+..+ ..+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 589999999888877777666654311 11 1 01111122233333222 245
Q ss_pred HHHHHHHHHhh-----cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007831 381 AKIVYLLECLQ-----KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 381 ~k~~~ll~~l~-----~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~ 455 (588)
.++.++...+- .....+|||+++.-+..++.+++++.++.++.+|...++..-.++.+.|..|...||+.|..+.
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 67777765442 2344679999999999999999999999999999999999999999999999999999999986
Q ss_pred --cCCCCCCcceEEecCCCCChhHHHH---HhcccccCC----CccEEEEEecCC
Q 007831 456 --KGLDFPDIQHVINYDMPAEIENYVH---RIGRTGRCG----KTGIATTFINKN 501 (588)
Q Consensus 456 --~GlDip~v~~VI~~~~p~s~~~y~q---riGRagR~g----~~g~~~~~~~~~ 501 (588)
+..++.+|+.||+|.+|.+|..|.. +++|+.-.| ..-.|.+++++-
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 8899999999999999999988855 556654323 345778888876
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=4.7e-18 Score=173.15 Aligned_cols=164 Identities=24% Similarity=0.304 Sum_probs=123.8
Q ss_pred cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCcccc
Q 007831 330 QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKAD 406 (588)
Q Consensus 330 ~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~ 406 (588)
..|+|++|||+.+.-...... +-+.-.+..-+...+.+.-+ +....+..|+..+. ..+.+++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vveQiIRPTGLlDP~ievR----p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVEQIIRPTGLLDPEIEVR----PTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeEEeecCCCCCCCceeee----cCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 359999999997653222221 11111122222222222111 22223334444333 345799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCC-----CChhHHHHH
Q 007831 407 VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP-----AEIENYVHR 481 (588)
Q Consensus 407 ~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p-----~s~~~y~qr 481 (588)
++.|.+||...|+.+..+|++.+.-+|.++++.++.|.++|||.-+.+-.|+|+|.|.+|.++|.. .|..+.+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988854 589999999
Q ss_pred hcccccCCCccEEEEEecCC
Q 007831 482 IGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 482 iGRagR~g~~g~~~~~~~~~ 501 (588)
||||+|. -.|.++.+.+.-
T Consensus 539 IGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 539 IGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHhhc-cCCeEEEEchhh
Confidence 9999996 678999888654
No 124
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.82 E-value=3e-18 Score=186.07 Aligned_cols=322 Identities=16% Similarity=0.178 Sum_probs=204.3
Q ss_pred CCCcHHHHHHHHHHh---cC-------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007831 164 VQPTPIQVQGLPVVL---SG-------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il---~g-------~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
..++|+|++++..+. .| ..+|+.-.+|+|||+.. ++.+..++... |....--.++|||||. .|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~---P~~~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQF---PQAKPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhC---cCccccccccEEEccH-HHHH
Confidence 357999999999876 23 25788889999999774 44444444432 1111122678999997 7889
Q ss_pred HHHHHHHHHhhcccccCCCCceEEEEEcCcch--HHHHHHH-----hcCCcEEEeChHHHHHHHHcccCCCCCcceeEec
Q 007831 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM--RSQLEVV-----KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306 (588)
Q Consensus 234 Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--~~~~~~l-----~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViD 306 (588)
.|.++|.+|...- .+....++|..+. ......+ .-..-|++.+++.+.+... .+....+++||+|
T Consensus 312 nWkkEF~KWl~~~------~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcD 383 (776)
T KOG0390|consen 312 NWKKEFGKWLGNH------RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCD 383 (776)
T ss_pred HHHHHHHHhcccc------ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEEC
Confidence 9999999996531 5666666766553 0111111 1134688899988875544 3456788999999
Q ss_pred CcccccccCcHHHHHHHHHhhhhcceeEEEecccch-H------------------------------------------
Q 007831 307 EADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT-K------------------------------------------ 343 (588)
Q Consensus 307 Eah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~-~------------------------------------------ 343 (588)
|.|++.+.. ..+...+..+...+ .|++|+|+-. +
T Consensus 384 EGHrlkN~~--s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~ 460 (776)
T KOG0390|consen 384 EGHRLKNSD--SLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEED 460 (776)
T ss_pred CCCCccchh--hHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhh
Confidence 999988754 56667777776555 5777888610 0
Q ss_pred ---------HHHHHHHhc------------CCC--eEEEecCCC------------------------------------
Q 007831 344 ---------IQNFARSAL------------VKP--VTVNVGRAG------------------------------------ 364 (588)
Q Consensus 344 ---------i~~~~~~~l------------~~p--~~i~~~~~~------------------------------------ 364 (588)
+..+...++ ..- .++......
T Consensus 461 ~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP 540 (776)
T KOG0390|consen 461 REREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHP 540 (776)
T ss_pred hhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCH
Confidence 111111111 000 000000000
Q ss_pred --------------CcccceEEEe-------eehhhHHHHHHHHHHhhcCCCCEEEE----eCccccHHHHHHHHHHcCC
Q 007831 365 --------------AANLDVIQEV-------EYVKQEAKIVYLLECLQKTPPPVLIF----CENKADVDDIHEYLLLKGV 419 (588)
Q Consensus 365 --------------~~~~~~~~~~-------~~~~~~~k~~~ll~~l~~~~~~viIF----~~s~~~~~~l~~~L~~~g~ 419 (588)
..+....... .-.....++..|...+.....++++| .+.+...+.+...++.+|+
T Consensus 541 ~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~ 620 (776)
T KOG0390|consen 541 SLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGY 620 (776)
T ss_pred HhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCc
Confidence 0000000000 00001233444444443333333333 4444555555666667799
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCC---cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEE
Q 007831 420 EAVAVHGGKDQEEREYAISSFKAGK---KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 420 ~~~~ihg~~~~~~R~~~~~~f~~g~---~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~ 496 (588)
.+..+||.++..+|+.+++.|++.. .-+|.+|-+.+.||++-+++.||.||.+|+|+.-.|.++|+-|.|++..|++
T Consensus 621 ~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~i 700 (776)
T KOG0390|consen 621 EVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYI 700 (776)
T ss_pred eEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEE
Confidence 9999999999999999999999654 3367778888999999999999999999999999999999999999987765
Q ss_pred E--ecCC
Q 007831 497 F--INKN 501 (588)
Q Consensus 497 ~--~~~~ 501 (588)
+ +...
T Consensus 701 YrLlatG 707 (776)
T KOG0390|consen 701 YRLLATG 707 (776)
T ss_pred EEeecCC
Confidence 4 5444
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=6.2e-18 Score=184.01 Aligned_cols=314 Identities=21% Similarity=0.277 Sum_probs=216.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|. .|+++|.-+--.+..|+ |.-+.||-|||+++.+|+....+. |..|-||+..--||..=.+++..
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~-----------GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT-----------GKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc-----------CCceEEEecchhhhhhhHHHHHH
Confidence 54 78999998887777764 799999999999999999765543 56688899999999988888888
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCccccc-c
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~-~ 313 (588)
+...+ ++.|+++..+.+..+..... .++|+++|...| .|.|..+ ......+.|.||||+|.++ |
T Consensus 142 vy~fL------GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID 213 (925)
T PRK12903 142 VFNFL------GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID 213 (925)
T ss_pred HHHHh------CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeec
Confidence 88777 99999998876666554443 489999998775 2444322 2235678899999999875 1
Q ss_pred cC---------------cHHHHHHHHHhhhh-------c-----------------------------------------
Q 007831 314 LG---------------FEDDIREVFDHFKA-------Q----------------------------------------- 330 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~-------~----------------------------------------- 330 (588)
.. +...+..+...+.. .
T Consensus 214 EArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A 293 (925)
T PRK12903 214 EAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRA 293 (925)
T ss_pred ccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHH
Confidence 10 11111111111110 0
Q ss_pred --------------------------------------------------------------------ceeEEEecccch
Q 007831 331 --------------------------------------------------------------------RQTLLFSATMPT 342 (588)
Q Consensus 331 --------------------------------------------------------------------~q~l~~SAT~~~ 342 (588)
.++.+||+|...
T Consensus 294 ~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~t 373 (925)
T PRK12903 294 HKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKT 373 (925)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 022344555443
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCC
Q 007831 343 KIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGV 419 (588)
Q Consensus 343 ~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~ 419 (588)
.-.+|...+-..-+.+....+ ....+ .....+.....|+..+++.+. +.+.|+||.|.|+..++.+++.|...|+
T Consensus 374 e~~Ef~~iY~l~Vv~IPTnkP-~~R~D-~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi 451 (925)
T PRK12903 374 EEQEFIDIYNMRVNVVPTNKP-VIRKD-EPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANI 451 (925)
T ss_pred HHHHHHHHhCCCEEECCCCCC-eeeee-CCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 333444333222222111111 11111 111234456677777766553 4688999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcC-CcEEEEEcCccccCCCCCCcc--------eEEecCCCCChhHHHHHhcccccCCC
Q 007831 420 EAVAVHGGKDQEEREYAISSFKAG-KKDVLVATDVASKGLDFPDIQ--------HVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 420 ~~~~ihg~~~~~~R~~~~~~f~~g-~~~vLVaT~~~~~GlDip~v~--------~VI~~~~p~s~~~y~qriGRagR~g~ 490 (588)
+..++++.-. +++..+-. ..| .-.|.|||++++||.||.--. |||....|.|..---|..||+||.|.
T Consensus 452 ~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 452 PHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred Cceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 9999998643 33333322 456 457999999999999996432 89999999998888899999999999
Q ss_pred ccEEEEEecCCC
Q 007831 491 TGIATTFINKNQ 502 (588)
Q Consensus 491 ~g~~~~~~~~~~ 502 (588)
+|.+-.|++-.+
T Consensus 529 pGss~f~lSLeD 540 (925)
T PRK12903 529 VGESRFFISLDD 540 (925)
T ss_pred CCcceEEEecch
Confidence 999999998764
No 126
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.80 E-value=6e-18 Score=174.86 Aligned_cols=283 Identities=20% Similarity=0.271 Sum_probs=208.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhc-cccc---------CCCCce---EEEEEcCcchHHHHHHHhc----------
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTP-MRDA---------GYPDLR---TLLCIGGVDMRSQLEVVKR---------- 274 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~-~~~~---------~~~~i~---~~~~~gg~~~~~~~~~l~~---------- 274 (588)
..|+||||||+|..|.++.+.+.+++.. .... +.|.-. ...-.......+.+..+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4799999999999999999999888765 1100 000000 0000000111112222211
Q ss_pred ---------------CCcEEEeChHHHHHHHHc------ccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhh----
Q 007831 275 ---------------GVHIVVATPGRLKDMLAK------KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA---- 329 (588)
Q Consensus 275 ---------------~~~IvV~Tp~~L~~~l~~------~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~---- 329 (588)
++|||||+|-.|...+.. ....|+++.++|+|.||.|+..+| +.+..++.+++.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCC
Confidence 389999999999888874 234589999999999999998777 667777776642
Q ss_pred --------------------cceeEEEecccchHHHHHHHHhcCCCe---EEEecCC-----CCcccceEEEeeehh---
Q 007831 330 --------------------QRQTLLFSATMPTKIQNFARSALVKPV---TVNVGRA-----GAANLDVIQEVEYVK--- 378 (588)
Q Consensus 330 --------------------~~q~l~~SAT~~~~i~~~~~~~l~~p~---~i~~~~~-----~~~~~~~~~~~~~~~--- 378 (588)
-+|+|++|+...+.+..+....+.+.. .+..... ......+.|.+..+.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 269999999999999999988665542 2221111 234455666665432
Q ss_pred ----hHHHHHHHHHH----hh--cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007831 379 ----QEAKIVYLLEC----LQ--KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 379 ----~~~k~~~ll~~----l~--~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vL 448 (588)
.+.++.++... +. ...+.+|||++|.-+...|.++|+..++.++.+|...++.+-.++...|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 34556655542 22 245689999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccc--cCCCCCCcceEEecCCCCChhHHHHHhcccccCCC------ccEEEEEecCC
Q 007831 449 VATDVAS--KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK------TGIATTFINKN 501 (588)
Q Consensus 449 VaT~~~~--~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~------~g~~~~~~~~~ 501 (588)
+.|..+. +...+.++++||+|++|..+..|...+.-.+.... ...+.++++.-
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 9999886 88999999999999999999999988865554432 57888888876
No 127
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.80 E-value=9.2e-18 Score=176.06 Aligned_cols=304 Identities=20% Similarity=0.238 Sum_probs=202.2
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007831 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
+.+-.+.+..+-+.+-+|++++||||||. ++| +.+.+..+ .....+.+.-|.|--|.-+++++..-....
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~------~~~g~I~~TQPRRVAavslA~RVAeE~~~~ 122 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGF------ASSGKIACTQPRRVAAVSLAKRVAEEMGCQ 122 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhccc------ccCCcEEeecCchHHHHHHHHHHHHHhCCC
Confidence 34455667777788999999999999994 455 33333322 122337788899988887776665543211
Q ss_pred cccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHh
Q 007831 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDH 326 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~ 326 (588)
.+-.|++.+--.+... ....|.+.|-|.|+.-+..... |+.+++||+||||.=.= ..+.+-.+++.
T Consensus 123 -----lG~~VGY~IRFed~ts------~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl--~TDiLlGlLKk 188 (674)
T KOG0922|consen 123 -----LGEEVGYTIRFEDSTS------KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL--HTDILLGLLKK 188 (674)
T ss_pred -----cCceeeeEEEecccCC------CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh--HHHHHHHHHHH
Confidence 1333433332111111 1268999999999877765543 88999999999996221 11222233333
Q ss_pred h---hhcceeEEEecccchHHHHHHHHhcCC-CeEEEecCCCCcccceEEEeeehhhHHHH----HHHHHH-hhcCCCCE
Q 007831 327 F---KAQRQTLLFSATMPTKIQNFARSALVK-PVTVNVGRAGAANLDVIQEVEYVKQEAKI----VYLLEC-LQKTPPPV 397 (588)
Q Consensus 327 ~---~~~~q~l~~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~~~~~~~~~~~~~~~~~~k~----~~ll~~-l~~~~~~v 397 (588)
+ +++-++|++|||+... ....++.+ |+....|+. ..+...+......+-+ ...++. +.+.++-+
T Consensus 189 i~~~R~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDI 261 (674)
T KOG0922|consen 189 ILKKRPDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRT----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDI 261 (674)
T ss_pred HHhcCCCceEEEEeeeecHH---HHHHHhcCCceEeecCCC----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCE
Confidence 2 2345799999999743 34445554 544333332 2222222222222222 222222 23456689
Q ss_pred EEEeCccccHHHHHHHHHHc----C--C--cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEec
Q 007831 398 LIFCENKADVDDIHEYLLLK----G--V--EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469 (588)
Q Consensus 398 iIF~~s~~~~~~l~~~L~~~----g--~--~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~ 469 (588)
|||....++++.+++.|.+. + . -+..+||.++.+++.++.+.--.|..+|++||++++..+.|+++..||.-
T Consensus 262 LvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDs 341 (674)
T KOG0922|consen 262 LVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDS 341 (674)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcC
Confidence 99999999999999998765 1 1 13568999999999999888888999999999999999999999999965
Q ss_pred CC------------------CCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 470 DM------------------PAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 470 ~~------------------p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
++ |-|-.+-.||.|||||.| +|.|+-++++++
T Consensus 342 G~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 342 GFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred CceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHH
Confidence 54 347788899999999985 899999998763
No 128
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.80 E-value=5.2e-18 Score=186.08 Aligned_cols=331 Identities=21% Similarity=0.292 Sum_probs=217.1
Q ss_pred CcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 166 PTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 166 p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
++.||++++..+. -+-+-|+|..+|-|||+..+--+.....+.+... ..-.....|||||+ .|+--|..++.+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~--~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSES--SEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccc--hhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 4789999988764 2358899999999999876544443333321000 00122237999997 889999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHH
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
|+. -+++..+.|+-..+...+.-.+.++|+|++++.+.+-+.. +.-..+.|+|+||.|.|.+.. ..+.
T Consensus 1053 f~p--------fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~k--tkl~ 1120 (1549)
T KOG0392|consen 1053 FFP--------FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNSK--TKLT 1120 (1549)
T ss_pred hcc--------hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecchH--HHHH
Confidence 964 5677788887555555555455689999999887532221 112345699999999998643 5566
Q ss_pred HHHHhhhhcceeEEEecccc-hHHHH------------------------------------------------------
Q 007831 322 EVFDHFKAQRQTLLFSATMP-TKIQN------------------------------------------------------ 346 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~-~~i~~------------------------------------------------------ 346 (588)
+..+.+..+. .+.+|+|+- +++.+
T Consensus 1121 kavkqL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1121 KAVKQLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHHHHHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH
Confidence 6666666665 466788861 00000
Q ss_pred --------------------------------------HHHHhcCCCeEEEecCCCCcccc-----eEEEeee-------
Q 007831 347 --------------------------------------FARSALVKPVTVNVGRAGAANLD-----VIQEVEY------- 376 (588)
Q Consensus 347 --------------------------------------~~~~~l~~p~~i~~~~~~~~~~~-----~~~~~~~------- 376 (588)
|.++ ...-+.-.+. .+..... +.|...|
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~-~k~~~~~~~d-~~~~S~gt~~~HvFqaLqYlrKLcnH 1277 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK-AKQCVSSQID-GGEESLGTDKTHVFQALQYLRKLCNH 1277 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH-hccccccccc-cchhccCcchHHHHHHHHHHHHhcCC
Confidence 0000 0000000000 0000000 0011100
Q ss_pred ----------------------------hhhHHHHHHHHHHhhc-----------------CCCCEEEEeCccccHHHHH
Q 007831 377 ----------------------------VKQEAKIVYLLECLQK-----------------TPPPVLIFCENKADVDDIH 411 (588)
Q Consensus 377 ----------------------------~~~~~k~~~ll~~l~~-----------------~~~~viIF~~s~~~~~~l~ 411 (588)
.....|+..|-+.+.+ .++++||||.-+...+.+.
T Consensus 1278 paLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVe 1357 (1549)
T KOG0392|consen 1278 PALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVE 1357 (1549)
T ss_pred cceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHH
Confidence 0111233333333321 2468999999999999999
Q ss_pred HHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcC-CcEEE-EEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccc
Q 007831 412 EYLLLKG---VEAVAVHGGKDQEEREYAISSFKAG-KKDVL-VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG 486 (588)
Q Consensus 412 ~~L~~~g---~~~~~ihg~~~~~~R~~~~~~f~~g-~~~vL-VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRag 486 (588)
+-|.+.. +....+.|..++.+|.++.++|+++ .++|| ++|-+.+.|+|+.++++||+++-.|+|-.-+|.+.||+
T Consensus 1358 kDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAH 1437 (1549)
T KOG0392|consen 1358 KDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1437 (1549)
T ss_pred HHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHH
Confidence 8887663 4455789999999999999999998 68865 67789999999999999999999999999999999999
Q ss_pred cCCCccEE--EEEecCCCChhHHHHHHHHH
Q 007831 487 RCGKTGIA--TTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 487 R~g~~g~~--~~~~~~~~~~~~~~~l~~~l 514 (588)
|.|++.++ +-||+...-+.....|.++-
T Consensus 1438 RIGQKrvVNVyRlItrGTLEEKVMgLQkFK 1467 (1549)
T KOG0392|consen 1438 RIGQKRVVNVYRLITRGTLEEKVMGLQKFK 1467 (1549)
T ss_pred hhcCceeeeeeeehhcccHHHHHhhHHHHh
Confidence 99998866 44577765444444555443
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=1.2e-16 Score=181.32 Aligned_cols=316 Identities=18% Similarity=0.253 Sum_probs=190.2
Q ss_pred CCCCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH-
Q 007831 162 GIVQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY- 236 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~- 236 (588)
|| .+++-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|+.|+.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~~ 309 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIMA 309 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHHH
Confidence 54 68999999555443 678899999999999999999988642 3568999999999999994
Q ss_pred HHHHHHhhcccccCCCCceEEEEEcCcchH------H-----------------------------------------HH
Q 007831 237 EVVEQFLTPMRDAGYPDLRTLLCIGGVDMR------S-----------------------------------------QL 269 (588)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~------~-----------------------------------------~~ 269 (588)
+.+..+...+ ++++.++.|+.+.- . -+
T Consensus 310 ~~i~~l~~~~------~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w 383 (820)
T PRK07246 310 EEVKAIQEVF------HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYF 383 (820)
T ss_pred HHHHHHHHhc------CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHH
Confidence 6666665443 45555555543310 0 00
Q ss_pred HHH------------------------hcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccC-----cH---
Q 007831 270 EVV------------------------KRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-----FE--- 317 (588)
Q Consensus 270 ~~l------------------------~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~-----~~--- 317 (588)
..+ ...++|||++-.-|...+.... .+...+++||||||++.+.. ..
T Consensus 384 ~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~ 462 (820)
T PRK07246 384 DQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNI 462 (820)
T ss_pred HHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecH
Confidence 000 1137899999877766554333 25678999999999986421 00
Q ss_pred ----HHH-------------------------------------------HH---HHHhh--------------------
Q 007831 318 ----DDI-------------------------------------------RE---VFDHF-------------------- 327 (588)
Q Consensus 318 ----~~i-------------------------------------------~~---i~~~~-------------------- 327 (588)
..+ .. .+..+
T Consensus 463 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W 542 (820)
T PRK07246 463 TSFLQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYW 542 (820)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 000 00 00000
Q ss_pred ----------------------------hhcceeEEEecccc--hHHHHHHHHhcC-CCeEEEecCCCCcccceE-E-Ee
Q 007831 328 ----------------------------KAQRQTLLFSATMP--TKIQNFARSALV-KPVTVNVGRAGAANLDVI-Q-EV 374 (588)
Q Consensus 328 ----------------------------~~~~q~l~~SAT~~--~~i~~~~~~~l~-~p~~i~~~~~~~~~~~~~-~-~~ 374 (588)
+....+|++|||++ +.. .+...+-. ......+......+..+. . .+
T Consensus 543 ~e~~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~ 621 (820)
T PRK07246 543 LESEKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIEKDKKQDQLVVVDQDM 621 (820)
T ss_pred EEecCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCCCChHHccEEEeCCCC
Confidence 00124688899985 222 23322211 111111110000000000 0 00
Q ss_pred ee---hhhHH---HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007831 375 EY---VKQEA---KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 375 ~~---~~~~~---k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vL 448 (588)
.. ...+. .+...+..+...+++++|+++|....+.+++.|....+.+ ...|... .+..+++.|+++...||
T Consensus 622 p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vL 698 (820)
T PRK07246 622 PLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQIL 698 (820)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEE
Confidence 00 11111 2222222233567899999999999999999997665554 4445322 25668999999989999
Q ss_pred EEcCccccCCCCCC--cceEEecCCCC----C--------------------------hhHHHHHhcccccCCCccEEEE
Q 007831 449 VATDVASKGLDFPD--IQHVINYDMPA----E--------------------------IENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 449 VaT~~~~~GlDip~--v~~VI~~~~p~----s--------------------------~~~y~qriGRagR~g~~g~~~~ 496 (588)
++|+.+.+|+|+|+ ...||...+|. + +..+.|.+||.-|.-..--+++
T Consensus 699 lG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 699 LGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred EecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999974 55677777662 1 2235688999999865333455
Q ss_pred EecCC
Q 007831 497 FINKN 501 (588)
Q Consensus 497 ~~~~~ 501 (588)
+++..
T Consensus 779 ilD~R 783 (820)
T PRK07246 779 ILDRR 783 (820)
T ss_pred EECCc
Confidence 55444
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.78 E-value=6.7e-18 Score=169.99 Aligned_cols=308 Identities=20% Similarity=0.269 Sum_probs=208.2
Q ss_pred CCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+..+-|+|.+++...+ .|..+++...+|.|||+.++..+ ..+.. +.| .|||||. .|--.|.+.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA--~yyra---------Ewp-lliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA--RYYRA---------EWP-LLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH--HHHhh---------cCc-EEEEecH-HHhHHHHHHHHH
Confidence 3456899999999887 67889999999999997764433 33332 233 5999998 555678888999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHH
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
|+..+ ..+.++.++.+.. ..+.....|.|.+++.+..+- +.+.-..+.+||+||.|.+.+.. ....+
T Consensus 263 ~lps~-------~pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~K 329 (689)
T KOG1000|consen 263 FLPSI-------HPIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTK 329 (689)
T ss_pred hcccc-------cceEEEecccCCc---cccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhh
Confidence 98755 2244455543332 122233579999998874332 22233457899999999988753 24566
Q ss_pred HHHHhhhhcceeEEEecccc----h---------------HHHHHHHHhcC-CCeEEEecCCCCccc-------------
Q 007831 322 EVFDHFKAQRQTLLFSATMP----T---------------KIQNFARSALV-KPVTVNVGRAGAANL------------- 368 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~----~---------------~i~~~~~~~l~-~p~~i~~~~~~~~~~------------- 368 (588)
.++..+....++|++|+|+. . ...+|+..+.. ..+.+.....+..+.
T Consensus 330 a~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMI 409 (689)
T KOG1000|consen 330 AATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMI 409 (689)
T ss_pred hhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHH
Confidence 66677777778999999972 1 11122222221 111111111111000
Q ss_pred ------------ceEEEeeehh--------------------------------------hHHHHHHHHHHhhc------
Q 007831 369 ------------DVIQEVEYVK--------------------------------------QEAKIVYLLECLQK------ 392 (588)
Q Consensus 369 ------------~~~~~~~~~~--------------------------------------~~~k~~~ll~~l~~------ 392 (588)
.-.+.+.++. -..|+..+.+.+..
T Consensus 410 RRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d 489 (689)
T KOG1000|consen 410 RRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPD 489 (689)
T ss_pred HHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCccccc
Confidence 0011111100 01122222333322
Q ss_pred -CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEE-EEEcCccccCCCCCCcceEEec
Q 007831 393 -TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG-KKDV-LVATDVASKGLDFPDIQHVINY 469 (588)
Q Consensus 393 -~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g-~~~v-LVaT~~~~~GlDip~v~~VI~~ 469 (588)
.+.+.+|||......+.+...+..+++....|.|..+..+|....+.|... ++.| +++-.+++.|+++.+.+.||+.
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 356899999999999999999999999999999999999999999999954 4554 5667788999999999999999
Q ss_pred CCCCChhHHHHHhcccccCCCccEEEE
Q 007831 470 DMPAEIENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 470 ~~p~s~~~y~qriGRagR~g~~g~~~~ 496 (588)
.++|++.-.+|.-.|++|.|++..+.+
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeE
Confidence 999999999999999999999875543
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=7.5e-17 Score=176.72 Aligned_cols=274 Identities=21% Similarity=0.216 Sum_probs=178.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|.-+.-.+. +..|..+.||.|||+++.+|+....+ .|..|-||+++..||.+-++.+..
T Consensus 74 G~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL-----------~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 74 GL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL-----------TGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred CC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh-----------cCCceEEEeCCHHHHHHHHHHHHH
Confidence 54 58888887765554 45799999999999999999975543 366799999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-----HHHHHc--ccCCCCCcceeEecCccccc-c
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-----KDMLAK--KKMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-----~~~l~~--~~~~l~~~~~lViDEah~l~-~ 313 (588)
+...+ ++.++++.++.+..+..... .++|+++|...| .|.+.. .......+.+.||||+|.++ |
T Consensus 140 vy~~L------GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLID 211 (870)
T CHL00122 140 IYRFL------GLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILID 211 (870)
T ss_pred HHHHc------CCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheec
Confidence 98877 99999998887776654444 379999998644 333321 12235678899999999875 1
Q ss_pred cC---------------cHHHHHHHHHhhhhc------------------------------------------------
Q 007831 314 LG---------------FEDDIREVFDHFKAQ------------------------------------------------ 330 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~~------------------------------------------------ 330 (588)
.. ....+..+...+...
T Consensus 212 eArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A 291 (870)
T CHL00122 212 EARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKA 291 (870)
T ss_pred cCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHH
Confidence 10 000001111111000
Q ss_pred --------------------------------------------------------------------ceeEEEecccch
Q 007831 331 --------------------------------------------------------------------RQTLLFSATMPT 342 (588)
Q Consensus 331 --------------------------------------------------------------------~q~l~~SAT~~~ 342 (588)
..+.+||+|...
T Consensus 292 ~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~t 371 (870)
T CHL00122 292 KELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKT 371 (870)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHH
Confidence 123455666544
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcCC
Q 007831 343 KIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKGV 419 (588)
Q Consensus 343 ~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g~ 419 (588)
.-.+|...+-..-+.+.. ..+....+. ....+.....|+..+++.+ .+.+.||||-|.|+...+.++..|...|+
T Consensus 372 e~~Ef~~iY~l~vv~IPt-nkp~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 372 EELEFEKIYNLEVVCIPT-HRPMLRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHHhCCCEEECCC-CCCccceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 433443333222222111 111111111 1233445566776666554 34688999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHH-HHHHHHhcCC-cEEEEEcCccccCCCCC
Q 007831 420 EAVAVHGGKDQEERE-YAISSFKAGK-KDVLVATDVASKGLDFP 461 (588)
Q Consensus 420 ~~~~ihg~~~~~~R~-~~~~~f~~g~-~~vLVaT~~~~~GlDip 461 (588)
+..++++.-.+.+++ .++.. .|+ -.|-|||++++||.||.
T Consensus 450 ~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 450 PHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 999999864222222 33332 453 56999999999999973
No 132
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.6e-17 Score=147.03 Aligned_cols=117 Identities=44% Similarity=0.744 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccC
Q 007831 381 AKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 457 (588)
Q Consensus 381 ~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 457 (588)
.+...+...+.+ .+.++||||++...++.++++|...+..+..+||+++..+|..+++.|.+|...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 455555555544 36799999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEE
Q 007831 458 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 497 (588)
Q Consensus 458 lDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~ 497 (588)
+|+|.+++||+++.|++...|.|++||++|.|+.|.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 133
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=4.5e-17 Score=169.13 Aligned_cols=307 Identities=20% Similarity=0.227 Sum_probs=202.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.--+++-.+.+.++...+-+||.|.|||||| -++|- .+.+... ...|.++=+--|.|-.|..+..++.+-.
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKT--TQiPQ--yL~EaGy-----tk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKT--TQIPQ--YLYEAGY-----TKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCcc--ccccH--HHHhccc-----ccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 3346777888888888999999999999999 45663 3444322 1234456677799988888876665532
Q ss_pred -hcccc-cCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccC--cHHH
Q 007831 244 -TPMRD-AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG--FEDD 319 (588)
Q Consensus 244 -~~~~~-~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~--~~~~ 319 (588)
-.+.. .|| .|+.--++. ...-|=+.|-|.|+.-+.. ...|.+.++|||||||.-.-.. .-..
T Consensus 335 gvkLG~eVGY-sIRFEdcTS------------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgL 400 (902)
T KOG0923|consen 335 GVKLGHEVGY-SIRFEDCTS------------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGL 400 (902)
T ss_pred Ccccccccce-EEEeccccC------------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHH
Confidence 22211 122 222222221 1245779999988766544 3458899999999999622100 0011
Q ss_pred HHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh-----hcCC
Q 007831 320 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL-----QKTP 394 (588)
Q Consensus 320 i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l-----~~~~ 394 (588)
+..| ..++++..+++.|||+... .|..-+-.-|+....++.. .+--.+...+..+-+...+..+ ....
T Consensus 401 vKDI-ar~RpdLKllIsSAT~DAe--kFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~ 473 (902)
T KOG0923|consen 401 VKDI-ARFRPDLKLLISSATMDAE--KFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPL 473 (902)
T ss_pred HHHH-HhhCCcceEEeeccccCHH--HHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEeccCC
Confidence 2222 2345677899999999754 4444344445555444432 2222222222333333333222 2345
Q ss_pred CCEEEEeCccccHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcce
Q 007831 395 PPVLIFCENKADVDDIHEYLLLK---------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 465 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~---------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~ 465 (588)
+-+|||..-....+...+.|... .+-+..+|+.++.+.+..+.+---.|-.+|++||++++..|.|++|..
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~y 553 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKY 553 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEE
Confidence 67999999988888777777543 234667899999999999888777888999999999999999999999
Q ss_pred EEecCC------------------CCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 466 VINYDM------------------PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 466 VI~~~~------------------p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
||.-++ |-|-.+-.||.|||||.| +|.|+-+++..
T Consensus 554 ViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 554 VIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred EecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 995544 446777899999999996 89999999843
No 134
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=176.42 Aligned_cols=311 Identities=17% Similarity=0.166 Sum_probs=212.9
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007831 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
+..+.+.+..+.+.+-+++.+.||+|||.-.---++....+. +....+++--|.|--|.-+++++..--..
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~--------~~~~~IicTQPRRIsAIsvAeRVa~ER~~- 245 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES--------GAACNIICTQPRRISAISVAERVAKERGE- 245 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------CCCCeEEecCCchHHHHHHHHHHHHHhcc-
Confidence 667888888888999999999999999966555555554443 23445677779998888888776654211
Q ss_pred cccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccc-cCcHHHHHHHHH
Q 007831 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFD 325 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~ 325 (588)
..+-.|+.-.+...... ....+++||.|-|+..+.. .-.+..+..||+||+|.=.- ..|.-.+.+.+-
T Consensus 246 ----~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL 314 (924)
T KOG0920|consen 246 ----SLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLL 314 (924)
T ss_pred ----ccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHh
Confidence 11333444333322211 2368999999999999877 55688999999999997432 234344444444
Q ss_pred hhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcc----------------cceEEE------------eeeh
Q 007831 326 HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN----------------LDVIQE------------VEYV 377 (588)
Q Consensus 326 ~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~----------------~~~~~~------------~~~~ 377 (588)
..++..++|+||||+..+ ....++.....+.+....... ....+. ....
T Consensus 315 ~~~p~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 315 PRNPDLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred hhCCCceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 445778999999999733 233343333222221110000 000000 0000
Q ss_pred ---hhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007831 378 ---KQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLK-------GVEAVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 378 ---~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~R~~~~~~f~~g~~ 445 (588)
-.-.-+..++..+.. ..+.+|||.+...++..+.+.|... .+-+..+|+.|+..++..+...--.|..
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 112234445555543 3678999999999999999999642 2556788999999999999888889999
Q ss_pred EEEEEcCccccCCCCCCcceEEecCC--------CC----------ChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 446 DVLVATDVASKGLDFPDIQHVINYDM--------PA----------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 446 ~vLVaT~~~~~GlDip~v~~VI~~~~--------p~----------s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+|++||++++..|.|++|-.||..+. -. |-.+-.||.|||||. +.|.|+.+++..
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999999999999999995443 22 456678999999998 799999999876
No 135
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=6.1e-18 Score=135.64 Aligned_cols=78 Identities=44% Similarity=0.807 Sum_probs=75.7
Q ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCC
Q 007831 412 EYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 412 ~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g 489 (588)
++|...|+.+..+||++++.+|..+++.|++|...|||||+++++|+|+|++++||++++|+++..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.9e-16 Score=164.72 Aligned_cols=302 Identities=21% Similarity=0.245 Sum_probs=196.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh-hc
Q 007831 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL-TP 245 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~-~~ 245 (588)
...+.+.+..+..++-+|+++.||||||.. +| +.++.... .....+-+--|.|..|.-+++.+..-+ ..
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGY------ADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhccc------ccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 456666677777788899999999999954 33 33444322 122334455699998888887766543 22
Q ss_pred ccc-cCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHH
Q 007831 246 MRD-AGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 246 ~~~-~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 324 (588)
+.. .|| .|+.--+++ ....|-+.|-|-|+.-.... -.|...+.||+||||.-.-. .+.+..++
T Consensus 428 lG~~VGY-sIRFEdvT~------------~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslN--tDilfGll 491 (1042)
T KOG0924|consen 428 LGDTVGY-SIRFEDVTS------------EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLN--TDILFGLL 491 (1042)
T ss_pred cccccce-EEEeeecCC------------CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccc--hHHHHHHH
Confidence 210 111 122222221 12568899998886554433 24788999999999973321 12233333
Q ss_pred Hhh---hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh-----hcCCCC
Q 007831 325 DHF---KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL-----QKTPPP 396 (588)
Q Consensus 325 ~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l-----~~~~~~ 396 (588)
+.. ..+..+|.+||||... .|..-+-.-|.....++. ..+.-.+...+.++-+...+... ....+-
T Consensus 492 k~~larRrdlKliVtSATm~a~--kf~nfFgn~p~f~IpGRT----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 492 KKVLARRRDLKLIVTSATMDAQ--KFSNFFGNCPQFTIPGRT----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGD 565 (1042)
T ss_pred HHHHHhhccceEEEeeccccHH--HHHHHhCCCceeeecCCc----cceEEEeccCchHHHHHHHHhhheEeeccCCCCC
Confidence 322 3356799999999753 444333334443332222 22322333333444443333322 223567
Q ss_pred EEEEeCccccHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceE
Q 007831 397 VLIFCENKADVDDIHEYLLLK----------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 397 viIF~~s~~~~~~l~~~L~~~----------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~V 466 (588)
+|||.....+++-....+... ++.+..+++.+++.-+.++.+.--.|..+++|||++++..|.+|++.+|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 999999888777665555332 6778899999999999999888888999999999999999999999999
Q ss_pred EecCC------------------CCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 467 INYDM------------------PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 467 I~~~~------------------p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|..+. |-|-.+--||.|||||.| +|.|+-+++++
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 96554 456777889999999985 89999999875
No 137
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=2.1e-17 Score=178.79 Aligned_cols=315 Identities=20% Similarity=0.278 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
++.+||..++..+. +.-+-|+...||.|||.. .+.++.++++.. ...||+ |||+|+..|.++.. +|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K------~~~GP~-LvivPlstL~NW~~-Ef~ 464 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK------QMQGPF-LIIVPLSTLVNWSS-EFP 464 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc------ccCCCe-EEeccccccCCchh-hcc
Confidence 78899999998865 335788899999999965 456666666643 235775 99999999988644 476
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHH--HHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHH
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLE--VVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~ 318 (588)
.|. |.+..+.+.|.-..+.... ......+|+++|++.++. .+..+.--++.|+||||.|+|.+.. .
T Consensus 465 kWa--------PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~ 532 (1157)
T KOG0386|consen 465 KWA--------PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--C 532 (1157)
T ss_pred ccc--------cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--h
Confidence 664 5777777777533322221 112458999999987743 1112222345799999999998642 2
Q ss_pred HHHHHHHhhhhcceeEEEeccc----------------------------------------------------------
Q 007831 319 DIREVFDHFKAQRQTLLFSATM---------------------------------------------------------- 340 (588)
Q Consensus 319 ~i~~i~~~~~~~~q~l~~SAT~---------------------------------------------------------- 340 (588)
.+...++..-.....+++|+|+
T Consensus 533 KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkV 612 (1157)
T KOG0386|consen 533 KLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKV 612 (1157)
T ss_pred HHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHh
Confidence 3333333111112234444443
Q ss_pred -----------------chHHHHHH------------------------------------------HHhcCCCeEEE-e
Q 007831 341 -----------------PTKIQNFA------------------------------------------RSALVKPVTVN-V 360 (588)
Q Consensus 341 -----------------~~~i~~~~------------------------------------------~~~l~~p~~i~-~ 360 (588)
|.+++..+ ++++..|..+. +
T Consensus 613 LRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 613 LRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred hhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 11111110 00111110000 0
Q ss_pred cCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Q 007831 361 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 440 (588)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f 440 (588)
...-.........+.......-+..++..|+..+++++.||....-.+.+..+|.-.++....+.|....++|...++.|
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 00000000000000001122334556667788999999999999999999999999999999999999999999999999
Q ss_pred hcCC---cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecC
Q 007831 441 KAGK---KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 441 ~~g~---~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~ 500 (588)
+... ..+|.+|.+.+.|+|+..++.||.||..|++....|+--||.|.|+...+-++..-
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 9654 45789999999999999999999999999999999999999999998877666543
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=2.1e-17 Score=166.49 Aligned_cols=304 Identities=20% Similarity=0.251 Sum_probs=194.0
Q ss_pred CCCcHHHHHHHHHHh-cC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVL-SG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il-~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..++|+|..++..++ +| |+-|++.|.|+|||++-+-++.. -...+||||.+.-.+.||...+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t--------------ikK~clvLcts~VSVeQWkqQfk 366 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT--------------IKKSCLVLCTSAVSVEQWKQQFK 366 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee--------------ecccEEEEecCccCHHHHHHHHH
Confidence 578999999999988 34 68999999999999987665542 24579999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------ccCCCCCcceeEecCccccc
Q 007831 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--------KKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~--------~~~~l~~~~~lViDEah~l~ 312 (588)
.|...- +-.++.++.+.. .....++.|+|+|+..+..--.+ ..+.-..+.++++||+|.+.
T Consensus 367 ~wsti~------d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP 435 (776)
T KOG1123|consen 367 QWSTIQ------DDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP 435 (776)
T ss_pred hhcccC------ccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch
Confidence 986432 334444554322 22345789999998655211111 01223457899999999987
Q ss_pred ccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHH-HhcCCCeEEEecCCCCcccceEEE------------------
Q 007831 313 DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR-SALVKPVTVNVGRAGAANLDVIQE------------------ 373 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~-~~l~~p~~i~~~~~~~~~~~~~~~------------------ 373 (588)
..-|+..+..+-.++ -+++|||+-.+-..+.. .++..|-..............+..
T Consensus 436 A~MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eY 510 (776)
T KOG1123|consen 436 AKMFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREY 510 (776)
T ss_pred HHHHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHH
Confidence 655544333333333 48999998443221110 111111111100000000000000
Q ss_pred ---------eeehhhHH---HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 007831 374 ---------VEYVKQEA---KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 374 ---------~~~~~~~~---k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~ 441 (588)
..++-... .-..|+..-...+.++|||..+.-.....+- +.|- -.++|..+|.+|..+++.|+
T Consensus 511 L~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi---kl~K--pfIYG~Tsq~ERm~ILqnFq 585 (776)
T KOG1123|consen 511 LRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI---KLGK--PFIYGPTSQNERMKILQNFQ 585 (776)
T ss_pred HhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH---HcCC--ceEECCCchhHHHHHHHhcc
Confidence 01111111 1234555555678899999997654444443 3343 36899999999999999999
Q ss_pred c-CCcEEEEEcCccccCCCCCCcceEEecCCC-CChhHHHHHhcccccCCC------ccEEEEEecCCC
Q 007831 442 A-GKKDVLVATDVASKGLDFPDIQHVINYDMP-AEIENYVHRIGRTGRCGK------TGIATTFINKNQ 502 (588)
Q Consensus 442 ~-g~~~vLVaT~~~~~GlDip~v~~VI~~~~p-~s~~~y~qriGRagR~g~------~g~~~~~~~~~~ 502 (588)
. ..+.-++-+-++-..+|+|.++++|....- .|-.+-.||.||.-|+-+ ...-+.+++.+.
T Consensus 586 ~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 586 TNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred cCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 4 567888888899999999999999977654 367788999999988632 234556666653
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=7.9e-16 Score=168.38 Aligned_cols=272 Identities=22% Similarity=0.244 Sum_probs=178.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+++|.-+--.+..| -|..+.||-|||+++.+|+....+. |..|-||+++..||..-++.+..+..
T Consensus 85 r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~-----------GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT-----------GKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc-----------CCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 6888888777666555 5899999999999999999876654 56699999999999999999999888
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-----HHHHHc--ccCCCCCcceeEecCccccc-ccC-
Q 007831 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-----KDMLAK--KKMNLDNCRYLTLDEADRLV-DLG- 315 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-----~~~l~~--~~~~l~~~~~lViDEah~l~-~~~- 315 (588)
.+ ++.|+++.++.+..+.... -.+||+++|+..| .|.+.. .......+.+.||||+|.++ |..
T Consensus 152 ~L------GLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEAr 223 (939)
T PRK12902 152 FL------GLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEAR 223 (939)
T ss_pred Hh------CCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCC
Confidence 77 9999999887766554333 3589999999887 554442 23446788999999999875 110
Q ss_pred --------------cHHHHHHHHHhhhh--------------cc------------------------------------
Q 007831 316 --------------FEDDIREVFDHFKA--------------QR------------------------------------ 331 (588)
Q Consensus 316 --------------~~~~i~~i~~~~~~--------------~~------------------------------------ 331 (588)
.......+...+.. ..
T Consensus 224 TPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~A 303 (939)
T PRK12902 224 TPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNA 303 (939)
T ss_pred CcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHH
Confidence 00111111111111 00
Q ss_pred ------------------------------------------------------------------------eeEEEecc
Q 007831 332 ------------------------------------------------------------------------QTLLFSAT 339 (588)
Q Consensus 332 ------------------------------------------------------------------------q~l~~SAT 339 (588)
++.+||+|
T Consensus 304 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGT 383 (939)
T PRK12902 304 LKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGT 383 (939)
T ss_pred HHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 12334444
Q ss_pred cchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHH
Q 007831 340 MPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLL 416 (588)
Q Consensus 340 ~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~ 416 (588)
....-.+|...+-..-+.+... .+....+ .....+.....|+..+++.+ .+.+.||||-+.|....+.+++.|..
T Consensus 384 a~te~~Ef~~iY~l~Vv~IPTn-kP~~R~d-~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~ 461 (939)
T PRK12902 384 AKTEEVEFEKTYKLEVTVIPTN-RPRRRQD-WPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQE 461 (939)
T ss_pred CHHHHHHHHHHhCCcEEEcCCC-CCeeeec-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHH
Confidence 3333223332222221111111 1111111 11223445567777776555 35788999999999999999999999
Q ss_pred cCCcEEEEeCCCCHHHHH-HHHHHHhcCC-cEEEEEcCccccCCCCC
Q 007831 417 KGVEAVAVHGGKDQEERE-YAISSFKAGK-KDVLVATDVASKGLDFP 461 (588)
Q Consensus 417 ~g~~~~~ihg~~~~~~R~-~~~~~f~~g~-~~vLVaT~~~~~GlDip 461 (588)
.|++..+++..-...+++ .++.. .|+ -.|-|||++++||-||.
T Consensus 462 ~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 462 QGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred cCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 999999999963322333 33332 454 46899999999999874
No 140
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=6.5e-18 Score=179.45 Aligned_cols=334 Identities=20% Similarity=0.219 Sum_probs=200.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007831 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g----~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
.|+.+.. .++...+.-+.-.+|+|+|++|+...+.| ..-=+++.+|+|||+..+-.+ ..+ ..
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eal------------a~ 206 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EAL------------AA 206 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHH------------hh
Confidence 4444332 44555555566789999999999999855 334567889999998764432 222 23
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH--------------------H---HHHH--hc
Q 007831 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS--------------------Q---LEVV--KR 274 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~--------------------~---~~~l--~~ 274 (588)
.++|+|+|+.+|..|+.+.+..-.. + .++...++.+..... . +... ..
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~-l------~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~ 279 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKE-L------DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKAN 279 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccC-c------cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccC
Confidence 5799999999999999988876532 1 556655555432211 1 1111 12
Q ss_pred CCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhh-----hcceeEEEecccch---HHH-
Q 007831 275 GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-----AQRQTLLFSATMPT---KIQ- 345 (588)
Q Consensus 275 ~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~-----~~~q~l~~SAT~~~---~i~- 345 (588)
+--||++|++.+...-......+..+++||.|||||-.......+=..-+..+. +....+.||||+-- ...
T Consensus 280 ~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~ 359 (1518)
T COG4889 280 GLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKA 359 (1518)
T ss_pred CcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhh
Confidence 567999999999777666667788999999999999764321111111111111 11235788898721 110
Q ss_pred -----------------------------HHHHHhcCCCeEEEecCCCCcccceEEEeeeh-h------hHHHHHHHHHH
Q 007831 346 -----------------------------NFARSALVKPVTVNVGRAGAANLDVIQEVEYV-K------QEAKIVYLLEC 389 (588)
Q Consensus 346 -----------------------------~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~-~------~~~k~~~ll~~ 389 (588)
...+.++.+.-++.............+..... . .-.++...-.-
T Consensus 360 kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnG 439 (1518)
T COG4889 360 KAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNG 439 (1518)
T ss_pred hhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhh
Confidence 11222333322221111111111111111100 0 01111111111
Q ss_pred hhcC----------------CCCEEEEeCccccHHHHHHHHHH-------------cCCcE--EEEeCCCCHHHHHHHHH
Q 007831 390 LQKT----------------PPPVLIFCENKADVDDIHEYLLL-------------KGVEA--VAVHGGKDQEEREYAIS 438 (588)
Q Consensus 390 l~~~----------------~~~viIF~~s~~~~~~l~~~L~~-------------~g~~~--~~ihg~~~~~~R~~~~~ 438 (588)
+.+. -.+.|-||.+++....+++.+.. .++.+ --+.|.|+..+|...+.
T Consensus 440 lakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~ 519 (1518)
T COG4889 440 LAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLE 519 (1518)
T ss_pred hhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHh
Confidence 1110 12578999998888777776532 23444 34568899988854443
Q ss_pred ---HHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCC-CccEEEEEe
Q 007831 439 ---SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG-KTGIATTFI 498 (588)
Q Consensus 439 ---~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g-~~g~~~~~~ 498 (588)
.|...+++||--...+++|+|+|.++.||+|++-.++-+.+|.+||+.|.. .+..+++++
T Consensus 520 l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 520 LKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred ccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 244567899988899999999999999999999999999999999999963 233444444
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=8.2e-15 Score=159.29 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc----CCcEEEEEcCccccC
Q 007831 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA----GKKDVLVATDVASKG 457 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~----g~~~vLVaT~~~~~G 457 (588)
....+...+...++.++|.+.|....+.+++.|...---.+.+.|..+ .+...++.|+. |...||++|+.+..|
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 345556667778889999999999999999999664323345566442 45668888987 478999999999999
Q ss_pred CCC--------CC--cceEEecCCCCC-------------------------hhHHHHHhcccccCCCc--cEEEEEecC
Q 007831 458 LDF--------PD--IQHVINYDMPAE-------------------------IENYVHRIGRTGRCGKT--GIATTFINK 500 (588)
Q Consensus 458 lDi--------p~--v~~VI~~~~p~s-------------------------~~~y~qriGRagR~g~~--g~~~~~~~~ 500 (588)
||+ |+ +++||+..+|.. .-.+.|-+||.-|.... --.++++++
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 999 33 889998887721 12356888999998554 334444444
Q ss_pred CCChhHH
Q 007831 501 NQSETTL 507 (588)
Q Consensus 501 ~~~~~~~ 507 (588)
.....+-
T Consensus 616 R~~~~yg 622 (636)
T TIGR03117 616 RIHWPYM 622 (636)
T ss_pred CCCchhH
Confidence 3333333
No 142
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=6.1e-17 Score=165.47 Aligned_cols=278 Identities=20% Similarity=0.202 Sum_probs=189.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
..+=++-++||.||||.-+ |+.+.+ ...+++.-|.|-||.++++.+.+. ++.+.+
T Consensus 190 ~RkIi~H~GPTNSGKTy~A----Lqrl~~-----------aksGvycGPLrLLA~EV~~r~na~----------gipCdL 244 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRA----LQRLKS-----------AKSGVYCGPLRLLAHEVYDRLNAL----------GIPCDL 244 (700)
T ss_pred hheEEEEeCCCCCchhHHH----HHHHhh-----------hccceecchHHHHHHHHHHHhhhc----------CCCccc
Confidence 3444666799999999553 444433 445799999999999999999887 788888
Q ss_pred EEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHH-hhhhcceeEEEe
Q 007831 259 CIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD-HFKAQRQTLLFS 337 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~-~~~~~~q~l~~S 337 (588)
++|......... ...+..+-||-+.. . .-..+++.|+||++.|.|...+-.|...+- .........+
T Consensus 245 ~TGeE~~~~~~~--~~~a~hvScTVEM~----s----v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-- 312 (700)
T KOG0953|consen 245 LTGEERRFVLDN--GNPAQHVSCTVEMV----S----VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-- 312 (700)
T ss_pred cccceeeecCCC--CCcccceEEEEEEe----e----cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC--
Confidence 888533222111 11255666675433 1 124578999999999998665555544332 2222222222
Q ss_pred cccchHHHHHHHHhcC---CCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHH
Q 007831 338 ATMPTKIQNFARSALV---KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYL 414 (588)
Q Consensus 338 AT~~~~i~~~~~~~l~---~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L 414 (588)
.+.+..++++.+. +.+.+ ..++....-.....++..+.+-.+.=-|.|-|+++.-.+...+
T Consensus 313 ---epsvldlV~~i~k~TGd~vev-------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kI 376 (700)
T KOG0953|consen 313 ---EPSVLDLVRKILKMTGDDVEV-------------REYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKI 376 (700)
T ss_pred ---CchHHHHHHHHHhhcCCeeEE-------------EeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHH
Confidence 2334455555542 11221 1222222222222455555554445566777889999999999
Q ss_pred HHcCCc-EEEEeCCCCHHHHHHHHHHHhc--CCcEEEEEcCccccCCCCCCcceEEecCCC---------CChhHHHHHh
Q 007831 415 LLKGVE-AVAVHGGKDQEEREYAISSFKA--GKKDVLVATDVASKGLDFPDIQHVINYDMP---------AEIENYVHRI 482 (588)
Q Consensus 415 ~~~g~~-~~~ihg~~~~~~R~~~~~~f~~--g~~~vLVaT~~~~~GlDip~v~~VI~~~~p---------~s~~~y~qri 482 (588)
...|.. +.+++|+++++.|..--..|++ +..+||||||+.++|+|+ +++-||+|++- -+..+..|..
T Consensus 377 E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIA 455 (700)
T KOG0953|consen 377 EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIA 455 (700)
T ss_pred HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHh
Confidence 988876 9999999999999999999997 899999999999999999 88999988864 3677889999
Q ss_pred cccccCCC---ccEEEEEecCCCChhHHHHHHHHHH
Q 007831 483 GRTGRCGK---TGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 483 GRagR~g~---~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
|||||.|. .|.+++|-.++ +..|++.++
T Consensus 456 GRAGRf~s~~~~G~vTtl~~eD-----L~~L~~~l~ 486 (700)
T KOG0953|consen 456 GRAGRFGSKYPQGEVTTLHSED-----LKLLKRILK 486 (700)
T ss_pred hcccccccCCcCceEEEeeHhh-----HHHHHHHHh
Confidence 99999974 58888887654 344555544
No 143
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.2e-15 Score=161.28 Aligned_cols=305 Identities=19% Similarity=0.203 Sum_probs=186.3
Q ss_pred HHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccC
Q 007831 171 VQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAG 250 (588)
Q Consensus 171 ~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~ 250 (588)
++++.+|..+.-+|+|+.|||||| -++| +.+++.....+..+. +..+=|--|.|-.|.-+.+++..-+..+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKT--TQvP--QFLYEAGf~s~~~~~-~gmIGITqPRRVAaiamAkRVa~EL~~~~--- 333 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKT--TQVP--QFLYEAGFASEQSSS-PGMIGITQPRRVAAIAMAKRVAFELGVLG--- 333 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcc--ccch--HHHHHcccCCccCCC-CCeeeecCchHHHHHHHHHHHHHHhccCc---
Confidence 445556666677899999999999 4566 445555444333322 33556778999888777766554332221
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhh---
Q 007831 251 YPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--- 327 (588)
Q Consensus 251 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~--- 327 (588)
..+....-+.|+-. ....|-++|-|-|+.-+.+ .+.|..++.||+||||.-.- +.+.+..+++++
T Consensus 334 -~eVsYqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 334 -SEVSYQIRFDGTIG--------EDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPL 401 (1172)
T ss_pred -cceeEEEEeccccC--------CCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccc--hHHHHHHHHHHHHHH
Confidence 12222333333221 2268999999999877765 44588999999999997321 112222223222
Q ss_pred ----hh------cceeEEEecccchHHHHHH--HHhcCC-CeEEEecCCCCcccceEEEeeehhhHHH----HHHHHHHh
Q 007831 328 ----KA------QRQTLLFSATMPTKIQNFA--RSALVK-PVTVNVGRAGAANLDVIQEVEYVKQEAK----IVYLLECL 390 (588)
Q Consensus 328 ----~~------~~q~l~~SAT~~~~i~~~~--~~~l~~-p~~i~~~~~~~~~~~~~~~~~~~~~~~k----~~~ll~~l 390 (588)
.. ....|+||||+--. +|. +.++.. |..+.+.. ....+.-+|......+- +...+.+.
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVs--DFtenk~LFpi~pPlikVdA---RQfPVsIHF~krT~~DYi~eAfrKtc~IH 476 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVS--DFTENKRLFPIPPPLIKVDA---RQFPVSIHFNKRTPDDYIAEAFRKTCKIH 476 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEec--ccccCceecCCCCceeeeec---ccCceEEEeccCCCchHHHHHHHHHHHHh
Confidence 11 23579999998533 333 222322 22333322 22223333332222221 22222322
Q ss_pred hc-CCCCEEEEeCccccHHHHHHHHHHcCC--------------------------------------------------
Q 007831 391 QK-TPPPVLIFCENKADVDDIHEYLLLKGV-------------------------------------------------- 419 (588)
Q Consensus 391 ~~-~~~~viIF~~s~~~~~~l~~~L~~~g~-------------------------------------------------- 419 (588)
++ .++.+|||+....+++.+.+.|++.--
T Consensus 477 ~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~ 556 (1172)
T KOG0926|consen 477 KKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQEL 556 (1172)
T ss_pred hcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhh
Confidence 33 466899999999999999999976300
Q ss_pred -------------------------------------------------cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007831 420 -------------------------------------------------EAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 420 -------------------------------------------------~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVa 450 (588)
-|.-+++=++.+++.++.+.--.|..-++||
T Consensus 557 ~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVa 636 (1172)
T KOG0926|consen 557 VDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVA 636 (1172)
T ss_pred hcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEe
Confidence 0122234455556666666666777889999
Q ss_pred cCccccCCCCCCcceEEecCCC--------C----------ChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 451 TDVASKGLDFPDIQHVINYDMP--------A----------EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p--------~----------s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|++++..|.||+++.||..+.- . |-.+--||+|||||.| .|.|+-+++..
T Consensus 637 TNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 637 TNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999999999966543 2 3334469999999996 89999988654
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.71 E-value=6.6e-15 Score=170.04 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred HHhhcCCCCEEEEeCccccHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC--c
Q 007831 388 ECLQKTPPPVLIFCENKADVDDIHEYLLLKGV--EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPD--I 463 (588)
Q Consensus 388 ~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~--v 463 (588)
..+...++++|||++|....+.+++.|..... ....+--+++...|..+++.|++++-.||++|+.+.+|||+|+ +
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l 825 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDEL 825 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCce
Confidence 34445678999999999999999999975432 1223333444456788999999998999999999999999998 5
Q ss_pred ceEEecCCCCC------------------------------hhHHHHHhcccccCCCccEEEEEecCC
Q 007831 464 QHVINYDMPAE------------------------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 464 ~~VI~~~~p~s------------------------------~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++||...+|.. +..+.|.+||.-|.....-++++++..
T Consensus 826 ~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 826 SCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 78998887741 122468889999986554455555554
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.3e-15 Score=135.88 Aligned_cols=144 Identities=37% Similarity=0.516 Sum_probs=110.6
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEE
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (588)
+++++.++||+|||.+++..+...... ...++++|++|++.++.|+.+.+..+... .+.+..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-------~~~~~~~~ 64 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---------LKGGQVLVLAPTRELANQVAERLKELFGE-------GIKVGYLI 64 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-------CcEEEEEe
Confidence 468999999999999988877765433 24568999999999999999998887531 46677777
Q ss_pred cCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEeccc
Q 007831 261 GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 261 gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
++............+.+|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 65 ~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 65 GGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 77666665555567799999999999887776655567789999999999987654443222334445667899999996
No 146
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=2.9e-15 Score=165.12 Aligned_cols=307 Identities=17% Similarity=0.251 Sum_probs=209.3
Q ss_pred CCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 163 IVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|....|+|.+.++.+. +++++++.+|+|||||.++-++++. +....++++++|.-+.+..+++.+.+
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------~~~~~~~vyi~p~~~i~~~~~~~w~~ 1208 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------PDTIGRAVYIAPLEEIADEQYRDWEK 1208 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------CccceEEEEecchHHHHHHHHHHHHH
Confidence 3445899999999988 5678999999999999999888874 13566899999999999999888887
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccC---cH-
Q 007831 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG---FE- 317 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~---~~- 317 (588)
-+..+ .+.+++.+.|..+..-. .+ ...+|+|+||+++ +.+. ..+.+++.|.||+|.+.+.. ++
T Consensus 1209 ~f~~~-----~G~~~~~l~ge~s~~lk--l~-~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~g~v~ev 1275 (1674)
T KOG0951|consen 1209 KFSKL-----LGLRIVKLTGETSLDLK--LL-QKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVYGAVYEV 1275 (1674)
T ss_pred hhccc-----cCceEEecCCccccchH--Hh-hhcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccCCceEEE
Confidence 66544 27778888776554322 22 3359999999999 6663 67889999999999987432 10
Q ss_pred -HHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccc--eEEEeeehhhHHHHHHHH-------
Q 007831 318 -DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLD--VIQEVEYVKQEAKIVYLL------- 387 (588)
Q Consensus 318 -~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~--~~~~~~~~~~~~k~~~ll------- 387 (588)
-.++.|.+.+.+..+++.+|..+.+. .+++ .......++........+- .+|.+.....+.....+.
T Consensus 1276 i~S~r~ia~q~~k~ir~v~ls~~lana-~d~i--g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai 1352 (1674)
T KOG0951|consen 1276 ICSMRYIASQLEKKIRVVALSSSLANA-RDLI--GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAI 1352 (1674)
T ss_pred EeeHHHHHHHHHhheeEEEeehhhccc-hhhc--cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHH
Confidence 12788888888888999999887654 2221 1111122222111111111 122222222222211111
Q ss_pred HHhhcCCCCEEEEeCccccHHHHHHHHHHc----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007831 388 ECLQKTPPPVLIFCENKADVDDIHEYLLLK----------------------GVEAVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 388 ~~l~~~~~~viIF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~R~~~~~~f~~g~~ 445 (588)
......+++.+||++++++|..++..|... .+..++=|.+++..+..-+-..|..|.+
T Consensus 1353 ~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i 1432 (1674)
T KOG0951|consen 1353 VRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAI 1432 (1674)
T ss_pred HHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcE
Confidence 112235779999999999998887655221 1222223889999999999999999999
Q ss_pred EEEEEcCccccCCCCCCcceEE----ecC------CCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 446 DVLVATDVASKGLDFPDIQHVI----NYD------MPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 446 ~vLVaT~~~~~GlDip~v~~VI----~~~------~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
.|+|...- ..|+-...--+|+ .|| .+.++....|++|+|.| .|.++++....
T Consensus 1433 ~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~ 1494 (1674)
T KOG0951|consen 1433 QVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTP 1494 (1674)
T ss_pred EEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCc
Confidence 99998877 7787765433333 222 35578999999999998 47888888776
No 147
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.65 E-value=5.9e-15 Score=154.15 Aligned_cols=120 Identities=21% Similarity=0.321 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCc-EEEEEcCccccCCCC
Q 007831 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK-DVLVATDVASKGLDF 460 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~-~vLVaT~~~~~GlDi 460 (588)
++..|+..|+..++++|+|+...+..+.+.+||..+|+....+.|.....+|..++..|....+ -+|++|.+.+.|||+
T Consensus 1032 ~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINL 1111 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINL 1111 (1185)
T ss_pred eHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccc
Confidence 3566777778889999999999999999999999999999999999999999999999997654 468999999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCC
Q 007831 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~ 501 (588)
.+++.||+||..|++..-.|.+.||.|.|++..+ +-++...
T Consensus 1112 TAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1112 TAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999988654 4445443
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=1.4e-15 Score=142.87 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVLS-------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYE 237 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~-------g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~ 237 (588)
+|+++|.+++..+.. .+++++.+|||||||.+++..+.... . +++|+||+..|+.|+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------~--~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------R--KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH------------C--EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc------------c--ceeEecCHHHHHHHHHH
Confidence 589999999999883 68999999999999988876555432 1 79999999999999999
Q ss_pred HHHHHhhcccccCC----CCc-eEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-----------cCCCCCcc
Q 007831 238 VVEQFLTPMRDAGY----PDL-RTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-----------KMNLDNCR 301 (588)
Q Consensus 238 ~~~~~~~~~~~~~~----~~i-~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-----------~~~l~~~~ 301 (588)
.+..+......... +.. ......................+++++|...|....... .......+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 99777542210000 000 000011111111222222446789999999998776532 12344678
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccch
Q 007831 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
+||+||||++.... .++.++. .....+|+||||+++
T Consensus 149 ~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 149 LVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999999986532 1455555 345568999999863
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.61 E-value=2.7e-14 Score=155.87 Aligned_cols=119 Identities=22% Similarity=0.310 Sum_probs=103.7
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--cEEEEEcCccccCCCC
Q 007831 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK--KDVLVATDVASKGLDF 460 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~--~~vLVaT~~~~~GlDi 460 (588)
+.-|+..|+..++++|||.......+.|..+|..+|+-.+.+.|..+-++|...+++|+... ..+|++|...+.|||+
T Consensus 1265 LAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred HHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 33455556667889999999999999999999999999999999999999999999999764 5678999999999999
Q ss_pred CCcceEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCC
Q 007831 461 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 461 p~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~ 501 (588)
.+++.||+||..|++..-.|.-.|+.|.|++..+ |-||++.
T Consensus 1345 tgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1345 TGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999988888888888877654 4556654
No 150
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=4.2e-15 Score=119.92 Aligned_cols=81 Identities=48% Similarity=0.816 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccC
Q 007831 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 409 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~ 488 (588)
.++++|...++.+..+||+++..+|..+++.|++|...|||+|++++.|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007831 489 G 489 (588)
Q Consensus 489 g 489 (588)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 151
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=4.2e-13 Score=151.34 Aligned_cols=116 Identities=24% Similarity=0.359 Sum_probs=86.4
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHHhcCCc-EEEEEcCccccCCCC
Q 007831 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKDQEEREYAISSFKAGKK-DVLVATDVASKGLDF 460 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~~~R~~~~~~f~~g~~-~vLVaT~~~~~GlDi 460 (588)
...+...+...++++|||++|......+++.+...... ....+|..+ +...++.|+.+.- -++|+|..+++|+|+
T Consensus 468 ~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 468 AAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 44455666677789999999999999999999876653 344555444 4478888887655 999999999999999
Q ss_pred CC--cceEEecCCCCC------------------------------hhHHHHHhcccccCCCccEEEEEecCC
Q 007831 461 PD--IQHVINYDMPAE------------------------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 461 p~--v~~VI~~~~p~s------------------------------~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|+ .+.||..++|.- +....|.+||+-|.-...-++++++..
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 98 577898888731 334579999999975444445555443
No 152
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=2e-13 Score=137.85 Aligned_cols=325 Identities=19% Similarity=0.241 Sum_probs=195.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007831 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+..|...++++...+.|++..-.--+..+...+..+.+++-+++++.||||||. ++|-+..-.... ....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~--------~~~~ 93 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELS--------HLTG 93 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHh--------hccc
Confidence 778999999999999998874333455666667777788999999999999994 455433221110 1133
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccc--ccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007831 222 CLIVCPSRELARQTYEVVEQFLTPMR--DAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~--~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~ 299 (588)
+..--|.|.-|.++..+...-..-.- ..|| .|+.--+++. .. =+-++|-+.|+.-..... .+.+
T Consensus 94 v~CTQprrvaamsva~RVadEMDv~lG~EVGy-sIrfEdC~~~---~T---------~Lky~tDgmLlrEams~p-~l~~ 159 (699)
T KOG0925|consen 94 VACTQPRRVAAMSVAQRVADEMDVTLGEEVGY-SIRFEDCTSP---NT---------LLKYCTDGMLLREAMSDP-LLGR 159 (699)
T ss_pred eeecCchHHHHHHHHHHHHHHhccccchhccc-cccccccCCh---hH---------HHHHhcchHHHHHHhhCc-cccc
Confidence 55566888888888776655432110 0111 1222111111 00 112455555543333322 3788
Q ss_pred cceeEecCcccccccC--cHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEe--e
Q 007831 300 CRYLTLDEADRLVDLG--FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV--E 375 (588)
Q Consensus 300 ~~~lViDEah~l~~~~--~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~--~ 375 (588)
.+.||+||||.-.-.. .-..+..++.. +++.++|.+|||+-.. -.+.++.++..+.+.. .....+.... .
T Consensus 160 y~viiLDeahERtlATDiLmGllk~v~~~-rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg--~~PvEi~Yt~e~e 233 (699)
T KOG0925|consen 160 YGVIILDEAHERTLATDILMGLLKEVVRN-RPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG--THPVEIFYTPEPE 233 (699)
T ss_pred ccEEEechhhhhhHHHHHHHHHHHHHHhh-CCCceEEEeecccchH---HHHHHhCCCCeeecCC--CCceEEEecCCCC
Confidence 9999999999722100 00112222222 2477899999998643 2455566655554432 1122221111 1
Q ss_pred ehhhHHHHHHHHHHh-hcCCCCEEEEeCccccHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHh---c
Q 007831 376 YVKQEAKIVYLLECL-QKTPPPVLIFCENKADVDDIHEYLLLK---------GVEAVAVHGGKDQEEREYAISSFK---A 442 (588)
Q Consensus 376 ~~~~~~k~~~ll~~l-~~~~~~viIF~~s~~~~~~l~~~L~~~---------g~~~~~ihg~~~~~~R~~~~~~f~---~ 442 (588)
...-++.+..++++. .+.++-++||.....+.+..++.+... .+.+.-+| +.+...+.+-.- +
T Consensus 234 rDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~ 309 (699)
T KOG0925|consen 234 RDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRN 309 (699)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccC
Confidence 111123333344433 235678999999999988888887643 23455566 222222222111 1
Q ss_pred C--CcEEEEEcCccccCCCCCCcceEEecCC------------------CCChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 443 G--KKDVLVATDVASKGLDFPDIQHVINYDM------------------PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 443 g--~~~vLVaT~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
| ..+|+|+|+.++..+.++++.+||.-++ |-|-.+-.||.||+||. .+|.|+.++++.
T Consensus 310 ~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 310 GAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 2 3579999999999999999999996554 45777889999999997 799999999865
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.56 E-value=5.5e-13 Score=134.72 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=96.3
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcE-EEEEcCccccCCCCCCcceEEecCC
Q 007831 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG-KKD-VLVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g-~~~-vLVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
.-+.|||..-....+.+.-.|.+.|+.++-+.|+|+...|..+++.|++. .++ +||+-.+.+..+|+..+.+|+++|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 44789999999999999999999999999999999999999999999976 455 4677788889999999999999999
Q ss_pred CCChhHHHHHhcccccCCCc--cEEEEEecCCC
Q 007831 472 PAEIENYVHRIGRTGRCGKT--GIATTFINKNQ 502 (588)
Q Consensus 472 p~s~~~y~qriGRagR~g~~--g~~~~~~~~~~ 502 (588)
.|++.--.|...|..|.|+. -.++.|+-++.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999999999999975 46677776653
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.6e-13 Score=150.25 Aligned_cols=125 Identities=20% Similarity=0.277 Sum_probs=100.3
Q ss_pred eehhhHHHHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-cEEEEE
Q 007831 375 EYVKQEAKIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK-KDVLVA 450 (588)
Q Consensus 375 ~~~~~~~k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~-~~vLVa 450 (588)
.|.....|+..+++.+ .+.+.||||-+.|+...+.+++.|...|++.-++++.....+-.-+- ..|. -.|-||
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTIA 682 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTIA 682 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEEe
Confidence 3445567777776655 45788999999999999999999999999988888765444433222 2343 468999
Q ss_pred cCccccCCCCC--------CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007831 451 TDVASKGLDFP--------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 451 T~~~~~GlDip--------~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
|++++||-||. +==|||--..+.|..---|-.||+||.|.+|.+-.|++-++
T Consensus 683 TNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 683 TNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred ccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99999999997 33478888899999999999999999999999999998774
No 155
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.54 E-value=8.8e-12 Score=139.89 Aligned_cols=105 Identities=19% Similarity=0.346 Sum_probs=77.8
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHh----cCCcEEEEEcCccccCCCCCC--cce
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFK----AGKKDVLVATDVASKGLDFPD--IQH 465 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~f~----~g~~~vLVaT~~~~~GlDip~--v~~ 465 (588)
.++.++||++|....+.++..|... ++. ...+|.. .|..+++.|+ .|+..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 5667999999999999999998743 333 4456642 4677887776 467889999999999999998 788
Q ss_pred EEecCCCCC-h-----------------------------hHHHHHhcccccCCCccEEEEEecCC
Q 007831 466 VINYDMPAE-I-----------------------------ENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 466 VI~~~~p~s-~-----------------------------~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
||...+|.. + ..+.|.+||.-|....--++++++..
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 998887731 1 12458889999986544445555544
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=1.3e-12 Score=145.47 Aligned_cols=316 Identities=20% Similarity=0.205 Sum_probs=182.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhc------CCC--EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007831 156 KKLKAKGIVQPTPIQVQGLPVVLS------GRD--MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 156 ~~l~~~g~~~p~~~Q~~~i~~il~------g~d--vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+.|.+..-..-+.+|-.|+..+.. ... ++-.|.||+|||++=.- +++.+.. ...|.+..|-.-
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR--ImyaLsd-------~~~g~RfsiALG 469 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR--AMYALRD-------DKQGARFAIALG 469 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH--HHHHhCC-------CCCCceEEEEcc
Confidence 444333333457899999998873 123 34459999999966322 2333332 246778888889
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH--------------------------------------
Q 007831 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL-------------------------------------- 269 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-------------------------------------- 269 (588)
.|.|-.|+-+.+++-+.- .+-...+++||....+-.
T Consensus 470 LRTLTLQTGda~r~rL~L------~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~ 543 (1110)
T TIGR02562 470 LRSLTLQTGHALKTRLNL------SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLD 543 (1110)
T ss_pred ccceeccchHHHHHhcCC------CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCcc
Confidence 999999988888875421 133344444443322111
Q ss_pred -----HHHhc--------CCcEEEeChHHHHHHHHc--c-cCCCC----CcceeEecCcccccccCcHHHHHHHHHhhh-
Q 007831 270 -----EVVKR--------GVHIVVATPGRLKDMLAK--K-KMNLD----NCRYLTLDEADRLVDLGFEDDIREVFDHFK- 328 (588)
Q Consensus 270 -----~~l~~--------~~~IvV~Tp~~L~~~l~~--~-~~~l~----~~~~lViDEah~l~~~~~~~~i~~i~~~~~- 328 (588)
..+.+ ...|+|||++.++..... . ...+. .=+.|||||+|.+-..-+ ..+..++....
T Consensus 544 ~~~l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~ 622 (1110)
T TIGR02562 544 TIELLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGL 622 (1110)
T ss_pred chhhhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHH
Confidence 11110 268999999999877632 1 11111 124799999998654322 22233333221
Q ss_pred hcceeEEEecccchHHHHHHHHh-----------cC---CCeEE---EecCCCCcccce---------------------
Q 007831 329 AQRQTLLFSATMPTKIQNFARSA-----------LV---KPVTV---NVGRAGAANLDV--------------------- 370 (588)
Q Consensus 329 ~~~q~l~~SAT~~~~i~~~~~~~-----------l~---~p~~i---~~~~~~~~~~~~--------------------- 370 (588)
-...++++|||+|+.+...+... .. .++.+ .+.........+
T Consensus 623 lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L 702 (1110)
T TIGR02562 623 LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQL 702 (1110)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 23569999999999876533221 12 12211 111111000000
Q ss_pred -------EEEeeehh-----hHHHHHHHHHHh-------hc--------CCCC---EEEEeCccccHHHHHHHHHHc---
Q 007831 371 -------IQEVEYVK-----QEAKIVYLLECL-------QK--------TPPP---VLIFCENKADVDDIHEYLLLK--- 417 (588)
Q Consensus 371 -------~~~~~~~~-----~~~k~~~ll~~l-------~~--------~~~~---viIF~~s~~~~~~l~~~L~~~--- 417 (588)
.-.+..+. .......+.+.+ .. .+++ .+|-++++..+..++..|...
T Consensus 703 ~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~ 782 (1110)
T TIGR02562 703 AKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAE 782 (1110)
T ss_pred hcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccc
Confidence 00000010 011111111111 00 1122 477788888888888888654
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHHH----------------------hc----CCcEEEEEcCccccCCCCCCcceEEe
Q 007831 418 ---GVEAVAVHGGKDQEEREYAISSF----------------------KA----GKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 418 ---g~~~~~ihg~~~~~~R~~~~~~f----------------------~~----g~~~vLVaT~~~~~GlDip~v~~VI~ 468 (588)
.+.+.+||+......|..+++.. .+ +...|+|+|.+.+.|+|+ +.+++|-
T Consensus 783 ~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~ 861 (1110)
T TIGR02562 783 EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA 861 (1110)
T ss_pred cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee
Confidence 24578899999888887766553 12 466899999999999998 6676664
Q ss_pred cCCCCChhHHHHHhcccccCCC
Q 007831 469 YDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 469 ~~~p~s~~~y~qriGRagR~g~ 490 (588)
- |.++...+|++||+.|.|.
T Consensus 862 ~--~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 862 D--PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred c--cCcHHHHHHHhhccccccc
Confidence 3 6679999999999999764
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=4.9e-12 Score=143.01 Aligned_cols=133 Identities=20% Similarity=0.306 Sum_probs=92.0
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCc------EEEEeCCCCHHHHHHHHHHHhc----CCcEEEEEc--Ccc
Q 007831 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE------AVAVHGGKDQEEREYAISSFKA----GKKDVLVAT--DVA 454 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~------~~~ihg~~~~~~R~~~~~~f~~----g~~~vLVaT--~~~ 454 (588)
.+.+...++.+|||++|....+.+++.+...|.. ..++.-+....++..+++.|+. |+-.||+|+ ..+
T Consensus 515 ~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~ 594 (705)
T TIGR00604 515 VEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKV 594 (705)
T ss_pred HHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcc
Confidence 3444556889999999999999999988765431 1223222333578889999964 466799999 889
Q ss_pred ccCCCCCC--cceEEecCCCC-Ch------------------------------hHHHHHhcccccCCCccEEEEEecCC
Q 007831 455 SKGLDFPD--IQHVINYDMPA-EI------------------------------ENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 455 ~~GlDip~--v~~VI~~~~p~-s~------------------------------~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++|||+++ ++.||..++|. ++ ....|.+||+-|.-..--++++++..
T Consensus 595 sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 595 SEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred cCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 99999998 78899999985 21 12358899999986655566666554
Q ss_pred CChhHHHHHHHHHHHhcccCchHHhhcc
Q 007831 502 QSETTLLDLKHLLQEAKQRIPPVLAELN 529 (588)
Q Consensus 502 ~~~~~~~~l~~~l~~~~~~~p~~l~~l~ 529 (588)
-.. ......+|.|+...-
T Consensus 675 ~~~----------~~~~~~lp~W~~~~~ 692 (705)
T TIGR00604 675 YAR----------SNKRKKLPKWIQDTI 692 (705)
T ss_pred cCC----------cchhhhcCHHHHhhc
Confidence 111 113355777776543
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.49 E-value=2e-12 Score=135.94 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=93.1
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh--cCCcEE-EEEcCccccCCCCCCcceEEe
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK--AGKKDV-LVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~--~g~~~v-LVaT~~~~~GlDip~v~~VI~ 468 (588)
....+++|...-......+...|...|+....+||.....+|..+++.|+ +|..+| |++-.+.+.|||+-+.+|+|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 34567777777777778888899999999999999999999999999998 454565 556677789999999999999
Q ss_pred cCCCCChhHHHHHhcccccCCCccEEEE--EecCC
Q 007831 469 YDMPAEIENYVHRIGRTGRCGKTGIATT--FINKN 501 (588)
Q Consensus 469 ~~~p~s~~~y~qriGRagR~g~~g~~~~--~~~~~ 501 (588)
.|+-|++.--.|...|.-|.|++..+++ |+...
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 9999999999999999999999876655 34444
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.49 E-value=6.1e-12 Score=138.81 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=161.9
Q ss_pred cCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH
Q 007831 188 FTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS 267 (588)
Q Consensus 188 ~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~ 267 (588)
-+|||||.+|+-.+-..+ . .|..+|||+|...|..|+.+.++..+. +..+..++++.+..+
T Consensus 168 ~~GSGKTevyl~~i~~~l-~----------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--------~~~v~~lhS~l~~~~ 228 (665)
T PRK14873 168 LPGEDWARRLAAAAAATL-R----------AGRGALVVVPDQRDVDRLEAALRALLG--------AGDVAVLSAGLGPAD 228 (665)
T ss_pred CCCCcHHHHHHHHHHHHH-H----------cCCeEEEEecchhhHHHHHHHHHHHcC--------CCcEEEECCCCCHHH
Confidence 359999999876665443 3 467899999999999999999998863 256888998887766
Q ss_pred HHHH---HhcC-CcEEEeChHHHHHHHHcccCCCCCcceeEecCccccccc---CcHHHHHHH--HHhhhhcceeEEEec
Q 007831 268 QLEV---VKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL---GFEDDIREV--FDHFKAQRQTLLFSA 338 (588)
Q Consensus 268 ~~~~---l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~---~~~~~i~~i--~~~~~~~~q~l~~SA 338 (588)
.... +..| +.|||+|-..+ ...+.++.+|||||=|--.-. +..-..+.+ +..-.....+|+.||
T Consensus 229 R~~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 229 RYRRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECC
Confidence 5443 3344 79999995322 345789999999999964321 111122222 222334667999999
Q ss_pred ccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeeh--------------hhHHHHHHHHHHhhcCCCCEEEEeCcc
Q 007831 339 TMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV--------------KQEAKIVYLLECLQKTPPPVLIFCENK 404 (588)
Q Consensus 339 T~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~--------------~~~~k~~~ll~~l~~~~~~viIF~~s~ 404 (588)
|++-+....+..-....+...-.......+. ...+... -+..-+..+-+.+ +.+ ++|||.|.+
T Consensus 302 TPSles~~~~~~g~~~~~~~~~~~~~~~~P~-v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L-~~g-qvll~lnRr 378 (665)
T PRK14873 302 ARTAEAQALVESGWAHDLVAPRPVVRARAPR-VRALGDSGLALERDPAARAARLPSLAFRAARDAL-EHG-PVLVQVPRR 378 (665)
T ss_pred CCCHHHHHHHhcCcceeeccccccccCCCCe-EEEEeCchhhhccccccccCccCHHHHHHHHHHH-hcC-cEEEEecCC
Confidence 9987765554432211111000000011111 1111100 0111222222333 345 999999876
Q ss_pred cc-----------------------------------------------------------HHHHHHHHHHc--CCcEEE
Q 007831 405 AD-----------------------------------------------------------VDDIHEYLLLK--GVEAVA 423 (588)
Q Consensus 405 ~~-----------------------------------------------------------~~~l~~~L~~~--g~~~~~ 423 (588)
-. .+.+.+.|... +.++..
T Consensus 379 Gyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r 458 (665)
T PRK14873 379 GYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT 458 (665)
T ss_pred CCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE
Confidence 33 33333333332 223333
Q ss_pred EeCCCCHHHHHHHHHHHhcCCcEEEEEcC----ccccCCCCCCcceEEecCCC------C------ChhHHHHHhccccc
Q 007831 424 VHGGKDQEEREYAISSFKAGKKDVLVATD----VASKGLDFPDIQHVINYDMP------A------EIENYVHRIGRTGR 487 (588)
Q Consensus 424 ihg~~~~~~R~~~~~~f~~g~~~vLVaT~----~~~~GlDip~v~~VI~~~~p------~------s~~~y~qriGRagR 487 (588)
+. ++.+++.|. ++.+|||+|. +++ +++..|+..|.. . ....+.|-.||+||
T Consensus 459 ~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr 525 (665)
T PRK14873 459 SG-------GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRP 525 (665)
T ss_pred EC-------hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcC
Confidence 22 234788886 5999999999 555 356777655532 1 24446788999999
Q ss_pred CCCccEEEEEecCC
Q 007831 488 CGKTGIATTFINKN 501 (588)
Q Consensus 488 ~g~~g~~~~~~~~~ 501 (588)
.+..|.+++..+++
T Consensus 526 ~~~~G~V~iq~~p~ 539 (665)
T PRK14873 526 RADGGQVVVVAESS 539 (665)
T ss_pred CCCCCEEEEEeCCC
Confidence 99999988875333
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.42 E-value=1.9e-11 Score=142.83 Aligned_cols=113 Identities=24% Similarity=0.325 Sum_probs=100.3
Q ss_pred HhhcCCC--CEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CcEEEEEcCccccCCCCCCcc
Q 007831 389 CLQKTPP--PVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG--KKDVLVATDVASKGLDFPDIQ 464 (588)
Q Consensus 389 ~l~~~~~--~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g--~~~vLVaT~~~~~GlDip~v~ 464 (588)
.+...+. +++||+......+.+..+|...++.+..++|.++...|...++.|.++ ..-++++|.+++.|+|+...+
T Consensus 704 ~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 704 KLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred HHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 3344566 999999999999999999999999999999999999999999999986 556788888999999999999
Q ss_pred eEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCC
Q 007831 465 HVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 465 ~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~ 501 (588)
+||+||..|++....|...|+.|.|++..+ +-|+..+
T Consensus 784 ~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 784 TVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred eEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 999999999999999999999999988755 4445555
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.41 E-value=4.2e-11 Score=129.24 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=93.8
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCC----c
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLK----------------------GVEAVAVHGGKDQEEREYAISSFKAGK----K 445 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~R~~~~~~f~~g~----~ 445 (588)
..+.++|||..+....+.|..+|... |.....+.|......|......|++-. .
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 45789999999999999999998542 566788999999999999999999642 2
Q ss_pred EEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEE
Q 007831 446 DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 497 (588)
Q Consensus 446 ~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~ 497 (588)
-.||+|.+.+.|||+-+++-||+||.-|+|.--+|-|=|+-|.|++.-++++
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 3799999999999999999999999999999999999999999998776654
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.37 E-value=3.5e-11 Score=131.16 Aligned_cols=286 Identities=15% Similarity=0.198 Sum_probs=176.2
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcC
Q 007831 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262 (588)
Q Consensus 183 vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg 262 (588)
.++-+|+|||||.+..- .+...+. ....++|+|...++|+.++...++... ++++....-.++
T Consensus 52 ~vVRSpMGTGKTtaLi~-wLk~~l~---------~~~~~VLvVShRrSL~~sL~~rf~~~~-------l~gFv~Y~d~~~ 114 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIR-WLKDALK---------NPDKSVLVVSHRRSLTKSLAERFKKAG-------LSGFVNYLDSDD 114 (824)
T ss_pred EEEECCCCCCcHHHHHH-HHHHhcc---------CCCCeEEEEEhHHHHHHHHHHHHhhcC-------CCcceeeecccc
Confidence 46669999999976543 3333322 246689999999999999998887652 223322221111
Q ss_pred cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHH------H-HHHhhhhcceeEE
Q 007831 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR------E-VFDHFKAQRQTLL 335 (588)
Q Consensus 263 ~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~------~-i~~~~~~~~q~l~ 335 (588)
..... +..+-+++..+.|..+. ...+.++++||+||+-..+..=|...++ . +...+.....+|+
T Consensus 115 ~~i~~------~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~ 185 (824)
T PF02399_consen 115 YIIDG------RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIV 185 (824)
T ss_pred ccccc------cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEE
Confidence 11111 12466777776664442 2346779999999998877642322222 2 2333456678999
Q ss_pred EecccchHHHHHHHHhcCC-CeEEEecCCCCcccc-------------------------------------eEEEeeeh
Q 007831 336 FSATMPTKIQNFARSALVK-PVTVNVGRAGAANLD-------------------------------------VIQEVEYV 377 (588)
Q Consensus 336 ~SAT~~~~i~~~~~~~l~~-p~~i~~~~~~~~~~~-------------------------------------~~~~~~~~ 377 (588)
+-||+.....+|+...... ++.+.++.--..... ........
T Consensus 186 ~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (824)
T PF02399_consen 186 MDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS 265 (824)
T ss_pred ecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccc
Confidence 9999999999999987653 333322210000000 00000111
Q ss_pred hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccC
Q 007831 378 KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 457 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 457 (588)
.....+...+..-...+..+-||+.|...++.+++.....+..+..++|..+..+. +. -++.+|++.|.+...|
T Consensus 266 ~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG 339 (824)
T PF02399_consen 266 NDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVG 339 (824)
T ss_pred cchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEE
Confidence 11222222222223356788999999999999999999999899999887665532 21 4679999999999999
Q ss_pred CCCCCcc--eEEec--CCC--CChhHHHHHhcccccCCCccEEEEEecCC
Q 007831 458 LDFPDIQ--HVINY--DMP--AEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 458 lDip~v~--~VI~~--~~p--~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+++-... -|.-| .+. .++.+..|++||+ |.=.....+++++..
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred eccchhhceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 9996543 24434 222 2455689999999 543455556665543
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.25 E-value=1.9e-11 Score=106.52 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=82.1
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|+-.++-..+|+|||--.+--++...+. .+.++|||.|||.++..+.+.++.. .+++...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~----------~~~rvLvL~PTRvva~em~~aL~~~----------~~~~~t~ 63 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK----------RRLRVLVLAPTRVVAEEMYEALKGL----------PVRFHTN 63 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHTTTS----------SEEEEST
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH----------ccCeEEEecccHHHHHHHHHHHhcC----------CcccCce
Confidence 4456788999999997765555555554 5778999999999999888777543 2332211
Q ss_pred EcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhh--cceeEEEe
Q 007831 260 IGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFS 337 (588)
Q Consensus 260 ~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~S 337 (588)
.-+ . ....+.-|-|+|...+...+.+ .....++++||+||||.+-... -..+..+..+.. ...+|++|
T Consensus 64 ~~~---~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mT 133 (148)
T PF07652_consen 64 ARM---R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMT 133 (148)
T ss_dssp TSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEE
T ss_pred eee---c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEe
Confidence 110 0 1124467889999998877766 5557899999999999854332 223333333333 24799999
Q ss_pred cccchHHH
Q 007831 338 ATMPTKIQ 345 (588)
Q Consensus 338 AT~~~~i~ 345 (588)
||+|....
T Consensus 134 ATPPG~~~ 141 (148)
T PF07652_consen 134 ATPPGSED 141 (148)
T ss_dssp SS-TT---
T ss_pred CCCCCCCC
Confidence 99997643
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.21 E-value=1.6e-10 Score=117.58 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=92.8
Q ss_pred HHHHHHHHHh-------------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007831 169 IQVQGLPVVL-------------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 169 ~Q~~~i~~il-------------~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
+|.+++..++ ..+.+|++..+|+|||+..+..+. .+..... ......+|||||. .+..||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~-----~~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP-----QRGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT-----TSS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc-----cccccceeEeecc-chhhhh
Confidence 5777776653 346889999999999987655444 3332110 0111248999999 888999
Q ss_pred HHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc---ccCCCCCcceeEecCccccc
Q 007831 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK---KKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~---~~~~l~~~~~lViDEah~l~ 312 (588)
..++.+++.+. .+++..+.|+..............+++|+|++.+...... ..+.-..+++||+||+|.+.
T Consensus 74 ~~E~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 74 KEEIEKWFDPD------SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp HHHHHHHSGT-------TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred hhhhccccccc------cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 99999997532 5667666665412222222234579999999988711000 11111348899999999996
Q ss_pred ccCcHHHHHHHHHhhhhcceeEEEecccc
Q 007831 313 DLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
+.. ......+..+. ....+++|||+.
T Consensus 148 ~~~--s~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 148 NKD--SKRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp TTT--SHHHHHHHCCC-ECEEEEE-SS-S
T ss_pred ccc--ccccccccccc-cceEEeeccccc
Confidence 544 44445555555 556788999974
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.20 E-value=9.2e-10 Score=120.99 Aligned_cols=311 Identities=21% Similarity=0.264 Sum_probs=193.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+.+|.-+ .+.-...-|.-+.||-|||+++.+|+.-..+. |..+.+|...--||.--.+++..+..
T Consensus 80 ~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~-----------gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNALA-----------GKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhcC-----------CCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 345555544 44444556889999999999999998765543 55688999999999998998988887
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHH------cccCCCCCcceeEecCccccc-cc--
Q 007831 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLA------KKKMNLDNCRYLTLDEADRLV-DL-- 314 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~------~~~~~l~~~~~lViDEah~l~-~~-- 314 (588)
.+ ++.+++...+.+..++..... +||..+|-..| .|.+. ........+.|.|+||+|-++ |.
T Consensus 147 ~L------GlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEAR 218 (822)
T COG0653 147 FL------GLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEAR 218 (822)
T ss_pred Hc------CCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccc
Confidence 76 899999999887766655544 79999997655 12222 123335568899999999865 10
Q ss_pred ------C-------cHHHHHHHHHhhhhc--------ceeE---------------------------------------
Q 007831 315 ------G-------FEDDIREVFDHFKAQ--------RQTL--------------------------------------- 334 (588)
Q Consensus 315 ------~-------~~~~i~~i~~~~~~~--------~q~l--------------------------------------- 334 (588)
| ....+..+...+... .+.+
T Consensus 219 tPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~ 298 (822)
T COG0653 219 TPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHI 298 (822)
T ss_pred cceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHH
Confidence 1 112222222222111 0111
Q ss_pred ----------------------------------------------------------------------EEecccchHH
Q 007831 335 ----------------------------------------------------------------------LFSATMPTKI 344 (588)
Q Consensus 335 ----------------------------------------------------------------------~~SAT~~~~i 344 (588)
+||.|.-...
T Consensus 299 l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~ 378 (822)
T COG0653 299 LFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE 378 (822)
T ss_pred HhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh
Confidence 1111111111
Q ss_pred HHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCCcE
Q 007831 345 QNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGVEA 421 (588)
Q Consensus 345 ~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~~~ 421 (588)
.+|...+...-+.+....+ ....+ .....|.....|+..++..+. ..+.|+||-..++...+.+++.|.+.|++.
T Consensus 379 ~EF~~iY~l~vv~iPTnrp-~~R~D-~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 379 EEFDVIYGLDVVVIPTNRP-IIRLD-EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred hhhhhccCCceeeccCCCc-ccCCC-CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCc
Confidence 1111111111111111111 11111 112234456677777776654 478899999999999999999999999998
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCC-cEEEEEcCccccCCCCCCcce-----------EEecCCCCChhHHHHHhcccccCC
Q 007831 422 VAVHGGKDQEEREYAISSFKAGK-KDVLVATDVASKGLDFPDIQH-----------VINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 422 ~~ihg~~~~~~R~~~~~~f~~g~-~~vLVaT~~~~~GlDip~v~~-----------VI~~~~p~s~~~y~qriGRagR~g 489 (588)
.++...-...+ .-+-.+ .|+ --|-|||++++||-||.--.. ||--.--.|-.---|.-||+||.|
T Consensus 457 ~VLNAk~h~~E--A~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 457 NVLNAKNHARE--AEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred eeeccccHHHH--HHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 88877655333 223222 343 457899999999999864332 332222233333458889999999
Q ss_pred CccEEEEEecCC
Q 007831 490 KTGIATTFINKN 501 (588)
Q Consensus 490 ~~g~~~~~~~~~ 501 (588)
-+|.+-.|++-.
T Consensus 534 DpG~S~F~lSle 545 (822)
T COG0653 534 DPGSSRFYLSLE 545 (822)
T ss_pred CcchhhhhhhhH
Confidence 999888888755
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.06 E-value=2e-09 Score=108.24 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPV----VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~----il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 479999995544 45789999999999999999999999776542110 023479999999999998877776
Q ss_pred HH
Q 007831 241 QF 242 (588)
Q Consensus 241 ~~ 242 (588)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.06 E-value=2e-09 Score=108.24 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPV----VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~----il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 479999995544 45789999999999999999999999776542110 023479999999999998877776
Q ss_pred HH
Q 007831 241 QF 242 (588)
Q Consensus 241 ~~ 242 (588)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.96 E-value=5.8e-08 Score=112.29 Aligned_cols=294 Identities=18% Similarity=0.208 Sum_probs=163.2
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEE
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (588)
+.-+|+=-||||||+.....+- .+... ...|.++||+-.+.|-.|+.+.+..+..... .. .
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-------~~-~-- 334 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-------ND-P-- 334 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhh-------hc-c--
Confidence 5689999999999987544432 33332 3688999999999999999999999965431 11 1
Q ss_pred cCcchHHHHHHHhcC-CcEEEeChHHHHHHHHcc-cC-CCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 261 GGVDMRSQLEVVKRG-VHIVVATPGRLKDMLAKK-KM-NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 261 gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~-~~-~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+...-...+..+ ..|||||-++|...+... .. .-..=-+||+|||||-- ++..-..+-..++. ...++||
T Consensus 335 ~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~~-a~~~gFT 410 (962)
T COG0610 335 KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALKK-AIFIGFT 410 (962)
T ss_pred cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhcc-ceEEEee
Confidence 222334444444433 389999999998777654 11 11222368999999943 32333333334433 6689999
Q ss_pred cccchHHHHH-HHHhcCCCeEEEecC---CCCcccceEEEee---------------e-------hhh--H---------
Q 007831 338 ATMPTKIQNF-ARSALVKPVTVNVGR---AGAANLDVIQEVE---------------Y-------VKQ--E--------- 380 (588)
Q Consensus 338 AT~~~~i~~~-~~~~l~~p~~i~~~~---~~~~~~~~~~~~~---------------~-------~~~--~--------- 380 (588)
+||-..-..- ......+.+....-. .......+..... . ... .
T Consensus 411 GTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 490 (962)
T COG0610 411 GTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKN 490 (962)
T ss_pred CCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhh
Confidence 9984221111 111122211111000 0000000000000 0 000 0
Q ss_pred --------HH----HHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHcCCc----------------EEEE-----
Q 007831 381 --------AK----IVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLKGVE----------------AVAV----- 424 (588)
Q Consensus 381 --------~k----~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~g~~----------------~~~i----- 424 (588)
.+ ...+.... .....++++.|.++..+..+.+........ ....
T Consensus 491 ~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 570 (962)
T COG0610 491 LEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKK 570 (962)
T ss_pred hhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhh
Confidence 00 00011111 123457788888877555555443222000 0000
Q ss_pred --eCCCCHHHHHHHHHHH--hcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccC--C--CccEEEE
Q 007831 425 --HGGKDQEEREYAISSF--KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC--G--KTGIATT 496 (588)
Q Consensus 425 --hg~~~~~~R~~~~~~f--~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~--g--~~g~~~~ 496 (588)
|.. ....+......| .....++||-++++-.|+|-|.++++. .|-|.-....+|.+-|+.|. + ..|..+.
T Consensus 571 ~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVD 648 (962)
T COG0610 571 QSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVD 648 (962)
T ss_pred hhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEE
Confidence 111 222333444443 456789999999999999999887655 56677788899999999997 4 2355555
Q ss_pred Eec
Q 007831 497 FIN 499 (588)
Q Consensus 497 ~~~ 499 (588)
|+.
T Consensus 649 f~g 651 (962)
T COG0610 649 FRG 651 (962)
T ss_pred Ccc
Confidence 554
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.92 E-value=3.2e-08 Score=97.05 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=98.2
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|++.|.-++-.+..|+ |+.+.||-|||++..+|+....+. |..|-||+.+..||..=++.+..++
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 479999999998887776 999999999999999988877654 6679999999999999999999999
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcc------cCCCCCcceeEecCccccc
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLK-DMLAKK------KMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~------~~~l~~~~~lViDEah~l~ 312 (588)
..+ ++.+.+++++.+......... ++|+++|...|. |.|..+ ......+.++||||+|.++
T Consensus 143 ~~L------Glsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFL------GLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHT------T--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHh------hhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 887 999999999887655444333 589999999874 444432 1125678999999999875
No 170
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.74 E-value=1.2e-09 Score=120.11 Aligned_cols=132 Identities=22% Similarity=0.283 Sum_probs=102.3
Q ss_pred CCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 165 QPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 165 ~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
...|+|.+.+-.+. ...++++.+|||+|||++|.+.++..+.. .++.++++++|..+|+....+.+.+..
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~---------~p~~kvvyIap~kalvker~~Dw~~r~ 997 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY---------YPGSKVVYIAPDKALVKERSDDWSKRD 997 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc---------CCCccEEEEcCCchhhcccccchhhhc
Confidence 45677877776655 45688999999999999999999876654 356789999999999998877777664
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--ccCCCCCcceeEecCccccccc
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--KKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~--~~~~l~~~~~lViDEah~l~~~ 314 (588)
. .++++++-+.|..... ...+ ..++++|+||+++-..... +...+.+++.+|+||.|++.+.
T Consensus 998 ~------~~g~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 998 E------LPGIKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred c------cCCceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 3 2478888888876554 2222 3479999999999766663 4556889999999999998754
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.67 E-value=3.1e-07 Score=103.64 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=57.6
Q ss_pred CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccC--CCc-------cEEEEEecCCCChhHHHHHHHHH
Q 007831 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC--GKT-------GIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 444 ~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~--g~~-------g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
..+.|++-+++..|.|.|++=++..+.-..|...-.|.+||.-|. .+. ..-++++.....+.++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999998888889999999999884 122 23455555554777788877766
Q ss_pred HHh
Q 007831 515 QEA 517 (588)
Q Consensus 515 ~~~ 517 (588)
.+.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.58 E-value=3.7e-06 Score=90.14 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=90.5
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCC------------------cEEEEeCCCCHHHHHHHHHHHhcC---CcEEEEEcC
Q 007831 394 PPPVLIFCENKADVDDIHEYLLLKGV------------------EAVAVHGGKDQEEREYAISSFKAG---KKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~------------------~~~~ihg~~~~~~R~~~~~~f~~g---~~~vLVaT~ 452 (588)
+.++|||..+....+.+.+.|.+..+ ....+.|..+..+|.+.+++|++- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45899999999999999999876522 345678889999999999999853 235889999
Q ss_pred ccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEe
Q 007831 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 498 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~ 498 (588)
+...|||+-..+-+|.||.-|++.--.|.+-|+-|-|++..|+++=
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999999999999999999999999999999999998887764
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.50 E-value=1e-05 Score=88.33 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=42.4
Q ss_pred CCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccC
Q 007831 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 443 g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~ 488 (588)
...+.|.+-.++-+|.|=|+|=.+.-.....|..+=+|.+||.-|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3578999999999999999999999999889999999999999995
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.42 E-value=9.5e-06 Score=91.72 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=52.3
Q ss_pred CcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccc
Q 007831 276 VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 276 ~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
..|+++||..|..-+..+.+.++.+..|||||||++....-+..+-.+++.-++..-+.+|||.+.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 479999999998777788899999999999999999876555666666666555555777777763
No 175
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.39 E-value=1.8e-06 Score=94.09 Aligned_cols=302 Identities=19% Similarity=0.185 Sum_probs=174.8
Q ss_pred HHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH-hhcccccCC
Q 007831 173 GLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF-LTPMRDAGY 251 (588)
Q Consensus 173 ~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~-~~~~~~~~~ 251 (588)
.+..+...+-+++-+.||.|||.-+.--+|..++.+.. +...-+.+--|+|-.+.-+.+.+.+- +...
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~------g~~~na~v~qprrisaisiaerva~er~e~~----- 454 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN------GASFNAVVSQPRRISAISLAERVANERGEEV----- 454 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc------cccccceeccccccchHHHHHHHHHhhHHhh-----
Confidence 33444456677888999999999988888888776421 11223566668888877777665542 1111
Q ss_pred CCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhh----
Q 007831 252 PDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF---- 327 (588)
Q Consensus 252 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~---- 327 (588)
+-.+|-....+..... .---|++||-+-++.++... +..+.++|+||.|..--.+ ..+..+++-+
T Consensus 455 -----g~tvgy~vRf~Sa~pr-pyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~~ty 523 (1282)
T KOG0921|consen 455 -----GETCGYNVRFDSATPR-PYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMISTY 523 (1282)
T ss_pred -----cccccccccccccccc-cccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhhccc
Confidence 1111111111000000 11258999999998888764 4567789999999754322 2222222222
Q ss_pred ---------------------hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCC------------------ccc
Q 007831 328 ---------------------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA------------------ANL 368 (588)
Q Consensus 328 ---------------------~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~------------------~~~ 368 (588)
..-+|..+.++|+|-. .|....+..+.....+.... .+.
T Consensus 524 ~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~ 601 (1282)
T KOG0921|consen 524 RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNM 601 (1282)
T ss_pred hhhhhhhhhcccchhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccc
Confidence 2223444455554432 22222222221111110000 001
Q ss_pred ceEEEeeeh----------hhHHHHHHHHHHh----hc--CCCCEEEEeCccccHHHHHHHHHHc-------CCcEEEEe
Q 007831 369 DVIQEVEYV----------KQEAKIVYLLECL----QK--TPPPVLIFCENKADVDDIHEYLLLK-------GVEAVAVH 425 (588)
Q Consensus 369 ~~~~~~~~~----------~~~~k~~~ll~~l----~~--~~~~viIF~~s~~~~~~l~~~L~~~-------g~~~~~ih 425 (588)
+....-.+. ........|++.+ .. ..+-++||.+--.....|..+|... .++..-.|
T Consensus 602 n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~H 681 (1282)
T KOG0921|consen 602 NILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLH 681 (1282)
T ss_pred ccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccch
Confidence 111111110 0111122223322 21 3457999999998888888888654 45677889
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC------------------CCChhHHHHHhccccc
Q 007831 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PAEIENYVHRIGRTGR 487 (588)
Q Consensus 426 g~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~qriGRagR 487 (588)
+.....+...+.+..-.|..+++++|.++..-+.+-++..||..+. ..+..+..||.||+||
T Consensus 682 sq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~gr 761 (1282)
T KOG0921|consen 682 SQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGR 761 (1282)
T ss_pred hhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCce
Confidence 9988888888888888999999999999998888888777774433 2356678999999998
Q ss_pred CCCccEEEEEec
Q 007831 488 CGKTGIATTFIN 499 (588)
Q Consensus 488 ~g~~g~~~~~~~ 499 (588)
. +.|.|..++.
T Consensus 762 v-R~G~~f~lcs 772 (1282)
T KOG0921|consen 762 V-RPGFCFHLCS 772 (1282)
T ss_pred e-cccccccccH
Confidence 6 5666666653
No 176
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.37 E-value=7.9e-07 Score=98.16 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=91.9
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-cE-EEEEcCccccCCCCCCcceEEecCCC
Q 007831 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK-KD-VLVATDVASKGLDFPDIQHVINYDMP 472 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~-~~-vLVaT~~~~~GlDip~v~~VI~~~~p 472 (588)
++++||+.-...+..+...|...++....+.|.|+...|...+..|..+. .. .+++.-+.+.|+++..+.||+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999999999999999999999999999999553 22 46778888999999999999999999
Q ss_pred CChhHHHHHhcccccCCCccEEEE
Q 007831 473 AEIENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 473 ~s~~~y~qriGRagR~g~~g~~~~ 496 (588)
|++..--|.+-|+.|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998876655
No 177
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.29 E-value=1.1e-06 Score=81.06 Aligned_cols=113 Identities=23% Similarity=0.333 Sum_probs=78.0
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC--ccccCCCCCC
Q 007831 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGV--EAVAVHGGKDQEEREYAISSFKAGKKDVLVATD--VASKGLDFPD 462 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~--~~~~GlDip~ 462 (588)
.+.+...++.+|||++|....+.+.+.+...+. ....+.. +..++..+++.|+++...||+|+. .+++|+|+|+
T Consensus 2 ~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 2 LELISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred hHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 345566778999999999999999999876532 1223333 245778899999999999999998 9999999997
Q ss_pred --cceEEecCCCCC-h-----------------------------hHHHHHhcccccCCCccEEEEEecCC
Q 007831 463 --IQHVINYDMPAE-I-----------------------------ENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 463 --v~~VI~~~~p~s-~-----------------------------~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++.||..++|.. + ....|.+||+-|....--+++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 778999999841 1 11358899999987665566666544
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.27 E-value=3.3e-06 Score=79.70 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH-------HH
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ-------TY 236 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q-------~~ 236 (588)
...++-|..++..+++..-+++.+|.|+|||+.++..++..+.. +.-.+.+|+-|+.+.... ..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---------g~~~kiii~Rp~v~~~~~lGflpG~~~ 73 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---------GEYDKIIITRPPVEAGEDLGFLPGDLE 73 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---------TS-SEEEEEE-S--TT----SS-----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---------CCCcEEEEEecCCCCccccccCCCCHH
Confidence 44688999999999988889999999999999998888887755 245678888888753111 11
Q ss_pred HHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCc
Q 007831 237 EVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~ 316 (588)
+.+.-++.++...-. .+ .+ ......+.....|-+.++..+ + ...+++ .+||+|||+.+.-
T Consensus 74 eK~~p~~~p~~d~l~-~~-----~~----~~~~~~~~~~~~Ie~~~~~~i-----R-Grt~~~-~~iIvDEaQN~t~--- 133 (205)
T PF02562_consen 74 EKMEPYLRPIYDALE-EL-----FG----KEKLEELIQNGKIEIEPLAFI-----R-GRTFDN-AFIIVDEAQNLTP--- 133 (205)
T ss_dssp ----TTTHHHHHHHT-TT-----S-----TTCHHHHHHTTSEEEEEGGGG-----T-T--B-S-EEEEE-SGGG--H---
T ss_pred HHHHHHHHHHHHHHH-HH-----hC----hHhHHHHhhcCeEEEEehhhh-----c-Cccccc-eEEEEecccCCCH---
Confidence 111111111100000 00 01 111222222345666654322 1 222332 7899999999753
Q ss_pred HHHHHHHHHhhhhcceeEEEec
Q 007831 317 EDDIREVFDHFKAQRQTLLFSA 338 (588)
Q Consensus 317 ~~~i~~i~~~~~~~~q~l~~SA 338 (588)
.+++.++.++...++++++.-
T Consensus 134 -~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 134 -EELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp -HHHHHHHTTB-TT-EEEEEE-
T ss_pred -HHHHHHHcccCCCcEEEEecC
Confidence 788999999988887776543
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.24 E-value=1.1e-05 Score=78.48 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~d-vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
++.+.|..|+..+++... .++.||.|+|||.+.. .++..+..... ......+.++|+++||...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 9999999999994433 33333311000 00123678899999999999999998887
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=1.6e-05 Score=75.48 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=70.3
Q ss_pred CCcHHHHHHHHHHhcC-CC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVLSG-RD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g-~d-vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
++++-|.+++..++.. .. +++.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~--l~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~--- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL--LKALAEALEA---------AGKRVIGLAPTNKAAKELREKT--- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH--HHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH--HHHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhh---
Confidence 3688999999999744 33 56779999999954 3334333332 4678999999998888755442
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc----cCCCCCcceeEecCcccccccCcHH
Q 007831 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK----KMNLDNCRYLTLDEADRLVDLGFED 318 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~----~~~l~~~~~lViDEah~l~~~~~~~ 318 (588)
++.+. |-.+++...... ...+...++||||||-.+.. .
T Consensus 67 ----------~~~a~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~ 108 (196)
T PF13604_consen 67 ----------GIEAQ------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----R 108 (196)
T ss_dssp ----------TS-EE------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----H
T ss_pred ----------Ccchh------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccCH----H
Confidence 11111 111111000000 01155667999999998753 5
Q ss_pred HHHHHHHhhhh-cceeEEEecc
Q 007831 319 DIREVFDHFKA-QRQTLLFSAT 339 (588)
Q Consensus 319 ~i~~i~~~~~~-~~q~l~~SAT 339 (588)
.+..++..++. ..+++++-=+
T Consensus 109 ~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 109 QLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHHHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHHHHHhcCCEEEEECCc
Confidence 67777777765 4556665444
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.15 E-value=2.1e-05 Score=77.70 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=107.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007831 147 DMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL----------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 147 ~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il----------~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
.+.||+.++. .| .++..|.+++-.+. .+.-.++-..||.||--...-.++..++.
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------- 89 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------- 89 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------
Confidence 4477776655 23 57889998886654 24567888899999986655555555544
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc---
Q 007831 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK--- 293 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~--- 293 (588)
...++|++..+..|-....+.+..+... .+.+..+.. ..... ...+ .-.|+++|+..|...-.++
T Consensus 90 -Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-------~i~v~~l~~-~~~~~-~~~~--~~GvlF~TYs~L~~~~~~~~~~ 157 (303)
T PF13872_consen 90 -GRKRAVWVSVSNDLKYDAERDLRDIGAD-------NIPVHPLNK-FKYGD-IIRL--KEGVLFSTYSTLISESQSGGKY 157 (303)
T ss_pred -CCCceEEEECChhhhhHHHHHHHHhCCC-------cccceechh-hccCc-CCCC--CCCccchhHHHHHhHHhccCCc
Confidence 2346999999999999999999887432 233322221 00000 0111 2469999999887664321
Q ss_pred cCCC--------CC-cceeEecCcccccccCcH--------HHHHHHHHhhhhcceeEEEecccchHHHHH
Q 007831 294 KMNL--------DN-CRYLTLDEADRLVDLGFE--------DDIREVFDHFKAQRQTLLFSATMPTKIQNF 347 (588)
Q Consensus 294 ~~~l--------~~-~~~lViDEah~l~~~~~~--------~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~ 347 (588)
...+ .+ =.+|||||||.+.+..-. ..+..+-+.++..+ ++.+|||-..+..++
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~Nm 227 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRNM 227 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCcee
Confidence 1111 11 138999999999876421 24444555565444 999999986654433
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.07 E-value=7.8e-05 Score=79.31 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=62.6
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH
Q 007831 157 KLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY 236 (588)
Q Consensus 157 ~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~ 236 (588)
.+..-++.++..-|..|+..+|+..=.|+++|.|+|||.+..-.+++.+.. .+..+|+++|+.-.+.|+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----------~~~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----------HAGPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----------cCCceEEEcccchhHHHHH
Confidence 555568889999999999999999999999999999998765544444322 3456899999999999999
Q ss_pred HHHHHH
Q 007831 237 EVVEQF 242 (588)
Q Consensus 237 ~~~~~~ 242 (588)
+.+.+.
T Consensus 472 eKIh~t 477 (935)
T KOG1802|consen 472 EKIHKT 477 (935)
T ss_pred HHHHhc
Confidence 988876
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.94 E-value=8.1e-05 Score=70.94 Aligned_cols=155 Identities=24% Similarity=0.381 Sum_probs=100.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLS---GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~---g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
.+|+.+..|..++=.+.. ++ -.++.|.+....+.+ |.|.+..+-+|.|||.+ ++|++..++.+ ..
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---------g~ 70 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---------GS 70 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---------CC
Confidence 357777778888776654 33 579999999988884 68999999999999966 78888887753 23
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH----HH----HHHhcCCcEEEeChHHHHHHHH
Q 007831 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS----QL----EVVKRGVHIVVATPGRLKDMLA 291 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~----~~----~~l~~~~~IvV~Tp~~L~~~l~ 291 (588)
..+.+++|. +|..|....+...+..+-.. .+-..-+.-.+.... .. ......-.|+++||+.++.+.-
T Consensus 71 ~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r---~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L 146 (229)
T PF12340_consen 71 RLVRVIVPK-ALLEQMRQMLRSRLGGLLNR---RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKL 146 (229)
T ss_pred cEEEEEcCH-HHHHHHHHHHHHHHHHHhCC---eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHH
Confidence 456777775 79999999988876654211 222222222222211 11 1222345799999998865532
Q ss_pred cc-------c-----------CCCCCcceeEecCcccccc
Q 007831 292 KK-------K-----------MNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 292 ~~-------~-----------~~l~~~~~lViDEah~l~~ 313 (588)
.. . ..++....=|+||+|..+.
T Consensus 147 ~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 147 KGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 21 0 0123334568999998765
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.88 E-value=7.1e-05 Score=72.73 Aligned_cols=144 Identities=15% Similarity=0.205 Sum_probs=83.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH-------H
Q 007831 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR-------Q 234 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~-------Q 234 (588)
++...+..|...+..+.++..+++.+++|+|||+..+..++..+... .-.+++|.=|+.+... .
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---------~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---------DVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---------CeeEEEEeCCCCCchhhhCcCCCC
Confidence 55667889999999998888888999999999988777666554331 2335566666654221 1
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-h-cCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccccc
Q 007831 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-K-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~-~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~ 312 (588)
..+.+.-|+.++.. .+.. +.|. .....+ . ..-.|-|+... ++. ...+. -.+||+|||+.+.
T Consensus 127 ~~eK~~p~~~pi~D----~L~~--~~~~----~~~~~~~~~~~~~Iei~~l~----ymR--Grtl~-~~~vIvDEaqn~~ 189 (262)
T PRK10536 127 IAEKFAPYFRPVYD----VLVR--RLGA----SFMQYCLRPEIGKVEIAPFA----YMR--GRTFE-NAVVILDEAQNVT 189 (262)
T ss_pred HHHHHHHHHHHHHH----HHHH--HhCh----HHHHHHHHhccCcEEEecHH----Hhc--CCccc-CCEEEEechhcCC
Confidence 22333333332211 0000 0111 111111 1 11245555532 222 22232 3799999999975
Q ss_pred ccCcHHHHHHHHHhhhhcceeEE
Q 007831 313 DLGFEDDIREVFDHFKAQRQTLL 335 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~ 335 (588)
- .++..++..++...++|+
T Consensus 190 ~----~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 190 A----AQMKMFLTRLGENVTVIV 208 (262)
T ss_pred H----HHHHHHHhhcCCCCEEEE
Confidence 3 778888888887776655
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.82 E-value=8.6e-05 Score=77.31 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=67.0
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcC
Q 007831 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG 262 (588)
Q Consensus 183 vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg 262 (588)
++|.|..|||||++.+-.+.. +.. ...+..+++++++..|...+.+.+..-...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~-l~~--------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKE-LQN--------SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHH-hhc--------cccCCceEEEEecchHHHHHHHHHhhhccc-----------------
Confidence 677899999999775443332 211 135678999999999998877777654200
Q ss_pred cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccC-------cHHHHHHHHHh
Q 007831 263 VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-------FEDDIREVFDH 326 (588)
Q Consensus 263 ~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~-------~~~~i~~i~~~ 326 (588)
......+..|..+...+.........+++|||||||++...+ ..+.+..+++.
T Consensus 58 -----------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233344444433333233456788999999999998832 23556666655
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.80 E-value=6.8e-05 Score=79.45 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~d-vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
..+.+-|.+|+..+.+.++ .++.+|+|+|||......+.+.+ . .+.++||.+||.+-+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k----------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-K----------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-H----------cCCeEEEEcCchHHHHHHHHHhc
Confidence 4568899999999998865 46669999999977655554444 3 46789999999999999888644
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.72 E-value=0.0003 Score=78.54 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
..+++.|..|+..++.. ..+++.||+|+|||.+.. .++..+.. .|.++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 677889999999996543 33333333 366899999999999998888876
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=97.53 E-value=0.00048 Score=54.27 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=39.8
Q ss_pred HHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007831 173 GLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 173 ~i~~il~g~d-vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
++...+++.+ +++.+|.|||||...+-.+...+.... ..+..+|+++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-------~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-------DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-------CCCCeEEEECCCHHHHHHHHHHH
Confidence 3443444444 555999999999665444443332111 12668999999999999988877
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.51 E-value=0.0011 Score=75.15 Aligned_cols=131 Identities=19% Similarity=0.177 Sum_probs=77.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++-|.+|+..+..++-+++.++.|+|||.+ +-.+..++... +....+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~--l~~i~~~~~~~-------~~~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI--TRAIIELAEEL-------GGLLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHHHHc-------CCCceEEEEeCchHHHHHHHHhc----
Confidence 478999999999999888999999999999954 33333333321 11156888999988776543221
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHH
Q 007831 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i 323 (588)
+..... ....+... |+..... ........++||||||+.+.. ..+..+
T Consensus 389 ---------g~~a~T---------ih~lL~~~-------~~~~~~~---~~~~~~~~~llIvDEaSMvd~----~~~~~L 436 (720)
T TIGR01448 389 ---------GLTAST---------IHRLLGYG-------PDTFRHN---HLEDPIDCDLLIVDESSMMDT----WLALSL 436 (720)
T ss_pred ---------CCcccc---------HHHHhhcc-------CCccchh---hhhccccCCEEEEeccccCCH----HHHHHH
Confidence 111100 00111000 0000000 001124578999999998753 456777
Q ss_pred HHhhhhcceeEEEecc
Q 007831 324 FDHFKAQRQTLLFSAT 339 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT 339 (588)
++.++...++|++.=+
T Consensus 437 l~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 437 LAALPDHARLLLVGDT 452 (720)
T ss_pred HHhCCCCCEEEEECcc
Confidence 7788877777775433
No 190
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.48 E-value=0.0019 Score=74.89 Aligned_cols=126 Identities=21% Similarity=0.208 Sum_probs=76.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007831 161 KGIVQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~d-vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.|+ .+++-|.+++..++++++ +++.++.|+|||.+ +-.+..++.. .|..++.++||--.|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~---------~G~~V~~~ApTGkAA~~L~e-- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA---------AGYEVRGAALSGIAAENLEG-- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------cCCeEEEecCcHHHHHHHhh--
Confidence 354 699999999999998765 67889999999954 3334433332 47789999999766554322
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHH
Q 007831 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~ 319 (588)
- . ++.. .|-.+|..-.......+...++|||||+-.+.. ..
T Consensus 409 --~---t------Gi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~ 449 (988)
T PRK13889 409 --G---S------GIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQ 449 (988)
T ss_pred --c---c------Ccch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HH
Confidence 1 0 1111 111122111112233466778999999997653 35
Q ss_pred HHHHHHhh-hhcceeEEEecc
Q 007831 320 IREVFDHF-KAQRQTLLFSAT 339 (588)
Q Consensus 320 i~~i~~~~-~~~~q~l~~SAT 339 (588)
+..+++.. +...++|++.=+
T Consensus 450 m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 450 LERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred HHHHHHhhhhCCCEEEEECCH
Confidence 55566543 345566665433
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.44 E-value=0.0017 Score=71.68 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=85.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007831 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
..+|..|+..++.++-+++.++.|+|||.+. ..++..+.... + ....+++++.+||---|..+.+.+......+
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~---~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQS---P--KQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc---c--ccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 3799999999999999999999999999552 22333332211 0 0113579999999988888777665543221
Q ss_pred cccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH------cccCCCCCcceeEecCcccccccCcHHHH
Q 007831 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA------KKKMNLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~------~~~~~l~~~~~lViDEah~l~~~~~~~~i 320 (588)
.. . .. +.....+-..|-.+|+.... ....+.-.+++||||||=.+.. ..+
T Consensus 221 ------~~---------~-~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~ 276 (586)
T TIGR01447 221 ------AA---------A-EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLM 276 (586)
T ss_pred ------cc---------c-hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHH
Confidence 00 0 00 00001112333333322211 1112234678999999987642 567
Q ss_pred HHHHHhhhhcceeEEEecc
Q 007831 321 REVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT 339 (588)
..+++.++...++|++.=.
T Consensus 277 ~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 277 AKLLKALPPNTKLILLGDK 295 (586)
T ss_pred HHHHHhcCCCCEEEEECCh
Confidence 7888888888887765433
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.44 E-value=0.00084 Score=74.15 Aligned_cols=108 Identities=24% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhc--------CCcEEEEEcCccccC
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLKG-------VEAVAVHGGKDQEEREYAISSFKA--------GKKDVLVATDVASKG 457 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g-------~~~~~ihg~~~~~~R~~~~~~f~~--------g~~~vLVaT~~~~~G 457 (588)
.+..+|||.++....+.+...+...+ +.- .+-.-.+..+=.+++..|.+ |..-+.||-...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 34579999999988888866665432 222 22222233333445555543 334567888889999
Q ss_pred CCCCC--cceEEecCCCCC--------------------------------------hhHHHHHhcccccCCCccEEEEE
Q 007831 458 LDFPD--IQHVINYDMPAE--------------------------------------IENYVHRIGRTGRCGKTGIATTF 497 (588)
Q Consensus 458 lDip~--v~~VI~~~~p~s--------------------------------------~~~y~qriGRagR~g~~g~~~~~ 497 (588)
+|+.+ .+.||..++|.- ....-|.+||+-|--++--++++
T Consensus 639 lDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l 718 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVIL 718 (945)
T ss_pred CCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeE
Confidence 99987 667999888721 11235888999987666555667
Q ss_pred ecCC
Q 007831 498 INKN 501 (588)
Q Consensus 498 ~~~~ 501 (588)
++..
T Consensus 719 ~D~R 722 (945)
T KOG1132|consen 719 CDDR 722 (945)
T ss_pred eech
Confidence 7654
No 193
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.43 E-value=0.00089 Score=59.68 Aligned_cols=93 Identities=20% Similarity=0.349 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCC------cEEEEeCCCCHHHHHHHHHHHhcCCc-EEEEEcCccccCCCCCC--cceEEecCCCCC---
Q 007831 407 VDDIHEYLLLKGV------EAVAVHGGKDQEEREYAISSFKAGKK-DVLVATDVASKGLDFPD--IQHVINYDMPAE--- 474 (588)
Q Consensus 407 ~~~l~~~L~~~g~------~~~~ihg~~~~~~R~~~~~~f~~g~~-~vLVaT~~~~~GlDip~--v~~VI~~~~p~s--- 474 (588)
.+.++..+...+. ....+.-+.+..+...+++.|+.... .||++|..+++|+|+|+ ++.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3445555555443 23445555666677889999987653 79999988999999998 578998888731
Q ss_pred ----------------------------hhHHHHHhcccccCCCccEEEEEec
Q 007831 475 ----------------------------IENYVHRIGRTGRCGKTGIATTFIN 499 (588)
Q Consensus 475 ----------------------------~~~y~qriGRagR~g~~g~~~~~~~ 499 (588)
.....|.+||+-|....--++++++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1123577899988765444455554
No 194
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.43 E-value=0.0013 Score=72.87 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=85.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Q 007831 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPM 246 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~ 246 (588)
.++|+.|+-..+.++-+++.+++|+|||.+. ..++..+.... ......+++++||.--|..+.+.+......+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~------~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA------DGERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc------CCCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 5899999999999999999999999999553 22333332211 1123578899999999988887766543321
Q ss_pred cccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHH------cccCCCCCcceeEecCcccccccCcHHHH
Q 007831 247 RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLA------KKKMNLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 247 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~------~~~~~l~~~~~lViDEah~l~~~~~~~~i 320 (588)
++ . .. +......-..|-.+|+.... .+..+.-.+++|||||+-.+- ...+
T Consensus 227 ------~~---------~--~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm 282 (615)
T PRK10875 227 ------PL---------T--DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMM 282 (615)
T ss_pred ------cc---------c--hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHH
Confidence 10 0 00 00000111223222221110 111223356899999998763 2667
Q ss_pred HHHHHhhhhcceeEEEecc
Q 007831 321 REVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT 339 (588)
..+++.+++..++|++.=.
T Consensus 283 ~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 283 ARLIDALPPHARVIFLGDR 301 (615)
T ss_pred HHHHHhcccCCEEEEecch
Confidence 7888888888887776443
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.36 E-value=0.0037 Score=71.31 Aligned_cols=62 Identities=16% Similarity=0.077 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY 236 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~ 236 (588)
..+++-|..|+..++.+ +-+++.++.|+|||.+ +-.+..++.. .|..+++++||--.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~---------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA---------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh---------CCCeEEEEeCcHHHHHHHH
Confidence 35899999999999874 5678889999999944 4444444432 4678999999977665543
No 196
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.28 E-value=0.00065 Score=66.14 Aligned_cols=87 Identities=26% Similarity=0.393 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc-chHHHHHHHhc-CCcEEEeChHHHHHHHHccc
Q 007831 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV-DMRSQLEVVKR-GVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~ 294 (588)
...|.+||||.+---|..+.+.+..|-.. +..++-++.-+ ...++...+.+ .++|.||||+|+..++..+.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-------~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~ 196 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-------DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA 196 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-------CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC
Confidence 45789999999988888888888887311 23333344433 66788888874 68999999999999999999
Q ss_pred CCCCCcceeEecCccc
Q 007831 295 MNLDNCRYLTLDEADR 310 (588)
Q Consensus 295 ~~l~~~~~lViDEah~ 310 (588)
+.++.+.+||||--|+
T Consensus 197 L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 197 LSLSNLKRIVLDWSYL 212 (252)
T ss_pred CCcccCeEEEEcCCcc
Confidence 9999999999998765
No 197
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.25 E-value=0.0014 Score=58.61 Aligned_cols=94 Identities=27% Similarity=0.396 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCC---cEEEEeCCCCHHHHHHHHHHHhcCCc---EEEEEcCc--cccCCCCCC--cceEEecCCCCC--
Q 007831 407 VDDIHEYLLLKGV---EAVAVHGGKDQEEREYAISSFKAGKK---DVLVATDV--ASKGLDFPD--IQHVINYDMPAE-- 474 (588)
Q Consensus 407 ~~~l~~~L~~~g~---~~~~ihg~~~~~~R~~~~~~f~~g~~---~vLVaT~~--~~~GlDip~--v~~VI~~~~p~s-- 474 (588)
.+.+++.+...+. ...++.-+.+..+...+++.|++... .||+++.. +++|||+|+ ++.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4455666655443 22333333444455788889987544 68888877 999999998 678998888831
Q ss_pred --h---------------------------hHHHHHhcccccCCCccEEEEEecC
Q 007831 475 --I---------------------------ENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 475 --~---------------------------~~y~qriGRagR~g~~g~~~~~~~~ 500 (588)
+ ....|.+||+-|....--++++++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 1235888999998655445555543
No 198
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.20 E-value=0.002 Score=71.97 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=93.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007831 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~d-vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
||...+-....+.+.+.+.. +..+..-|++|+-.++..+| .++.+=+|+|||......+ ..+..
T Consensus 647 pP~f~~~~~~~~~p~~~~~~----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~---------- 711 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKII----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA---------- 711 (1100)
T ss_pred CchhhcccccccCchhhHHH----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH----------
Confidence 33333434455666666542 34678899999999997776 5667889999996543322 22222
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCC-----CCceEEEEEcCcchH--HHHHHHhcCCcEEEeChHHHHHHH
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY-----PDLRTLLCIGGVDMR--SQLEVVKRGVHIVVATPGRLKDML 290 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~-----~~i~~~~~~gg~~~~--~~~~~l~~~~~IvV~Tp~~L~~~l 290 (588)
.|.++|+.+-|...+..+.-.+..+.-.+-..|. |.+.-.+...+.+.+ +........+.||.+|--.+.+.+
T Consensus 712 ~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl 791 (1100)
T KOG1805|consen 712 LGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL 791 (1100)
T ss_pred cCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh
Confidence 5788999999988888877777666332221111 111111112222111 122233446788888864444443
Q ss_pred HcccCCCCCcceeEecCcccccc
Q 007831 291 AKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 291 ~~~~~~l~~~~~lViDEah~l~~ 313 (588)
. ..+.++|+|||||-.+..
T Consensus 792 f----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 792 F----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred h----hccccCEEEEcccccccc
Confidence 3 345689999999998764
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.15 E-value=0.0013 Score=62.00 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=31.8
Q ss_pred eChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEeccc
Q 007831 281 ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 281 ~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
..+..+...+.. .-..+++|||||+|.+. .+++..+++.+......+++|+--
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 444455454433 23567899999998752 244666777755554455555543
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.14 E-value=0.0037 Score=62.89 Aligned_cols=142 Identities=15% Similarity=0.250 Sum_probs=85.9
Q ss_pred CCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH----
Q 007831 162 GIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT---- 235 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~---- 235 (588)
|+..-...|.-|+..++.. .=|.+.++.|||||+.++.+.+...+... ...++||-=|+..+.+.+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--------~y~KiiVtRp~vpvG~dIGfLP 296 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--------RYRKIIVTRPTVPVGEDIGFLP 296 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--------hhceEEEecCCcCcccccCcCC
Confidence 7766677899999988855 34677799999999999999998887753 344567766776554321
Q ss_pred ---HHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc----------ce
Q 007831 236 ---YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC----------RY 302 (588)
Q Consensus 236 ---~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~----------~~ 302 (588)
.+.+.-|+. +..+....+.+..+ ++-+.|...+.+..+.+..+ .+
T Consensus 297 G~eEeKm~PWmq-------------------~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~F 354 (436)
T COG1875 297 GTEEEKMGPWMQ-------------------AIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSF 354 (436)
T ss_pred CchhhhccchHH-------------------HHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccce
Confidence 011111111 11112222221111 12333444444433322211 47
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
||+|||+.+. ..++..|+.+.....+++++.
T Consensus 355 iIIDEaQNLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 355 IIIDEAQNLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred EEEehhhccC----HHHHHHHHHhccCCCEEEEcC
Confidence 9999999985 378999999998888777743
No 201
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.08 E-value=3.6e-05 Score=84.36 Aligned_cols=70 Identities=29% Similarity=0.386 Sum_probs=61.0
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc---CCcEEEEEcCccccC
Q 007831 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA---GKKDVLVATDVASKG 457 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~---g~~~vLVaT~~~~~G 457 (588)
+..+++.+++|+||..-....+.+..++...+ ....+.|...-.+|..+++.|+. ....+|.+|.+.+.|
T Consensus 624 ~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 624 LKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 34455678999999999999999999999999 88999999999999999999993 356789999987765
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.05 E-value=0.0024 Score=55.99 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=13.1
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~l 199 (588)
+++.+++.|++|+|||.+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 356789999999999966433
No 203
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.04 E-value=0.0023 Score=63.09 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCC--------cceEEecCCCCChhHHHHHhcccccCCCc-cEEEEEecCCC--C
Q 007831 435 YAISSFKAGKKDVLVATDVASKGLDFPD--------IQHVINYDMPAEIENYVHRIGRTGRCGKT-GIATTFINKNQ--S 503 (588)
Q Consensus 435 ~~~~~f~~g~~~vLVaT~~~~~GlDip~--------v~~VI~~~~p~s~~~y~qriGRagR~g~~-g~~~~~~~~~~--~ 503 (588)
...+.|.+|+.+|+|.|++++.||.+.+ -++-|...+|||....+|..||+.|.|+. ...+.++..+. +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998864 35677889999999999999999999884 44566555442 3
Q ss_pred hhHHHHHHHHHH
Q 007831 504 ETTLLDLKHLLQ 515 (588)
Q Consensus 504 ~~~~~~l~~~l~ 515 (588)
..++..+.+-|.
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 204
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.00 E-value=0.0013 Score=68.79 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHH------hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007831 166 PTPIQVQGLPVV------LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 166 p~~~Q~~~i~~i------l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
+++-|+.++..+ ..+..+++.++-|+||| |++-.+...+. ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~---------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLR---------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhc---------cccceEEEecchHHHHHhc
Confidence 567899998888 57889999999999999 55555555443 2467899999997766654
No 205
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0021 Score=63.41 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHhcCCCEEEEecCCchHhHHHHH
Q 007831 176 VVLSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 176 ~il~g~dvii~a~TGsGKTl~~~l 199 (588)
.+-.+.+++++||+|+|||.....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH
Confidence 344778999999999999966543
No 206
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.95 E-value=0.0022 Score=65.34 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=75.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Q 007831 166 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTP 245 (588)
Q Consensus 166 p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~ 245 (588)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... .+...+|+|++|+..|..+.+.+...+..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 47789999887 6789999999999999886665555444321 13446999999999999999999987654
Q ss_pred ccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCC--CcceeEecCcc
Q 007831 246 MRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLD--NCRYLTLDEAD 309 (588)
Q Consensus 246 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~--~~~~lViDEah 309 (588)
.......+ .........-..+.|.|-..+...+.+...... .-.+-++|+..
T Consensus 72 ~~~~~~~~------------~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 72 EQQESSDN------------ERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCHCCTT-------------HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccc------------ccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 31110000 011112223357889998887654443221111 22456666666
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.024 Score=59.24 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEE-cC-CHHHHHHHHHHHHHHhhcccccCCCCceEE
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIV-CP-SRELARQTYEVVEQFLTPMRDAGYPDLRTL 257 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil-~P-tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~ 257 (588)
++.+++++|||+|||.+..--+........ ..+..+.++ +- .|.-+.++ +..++..+ ++.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~-------~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l------gvpv~ 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD-------DKSLNIKIITIDNYRIGAKKQ---IQTYGDIM------GIPVK 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc-------cCCCeEEEEeccCccHHHHHH---HHHHhhcC------CcceE
Confidence 457889999999999775433322221110 123344333 33 34444433 34443322 33221
Q ss_pred EEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccC-cHHHHHHHHHhhhhc-ceeEE
Q 007831 258 LCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQ-RQTLL 335 (588)
Q Consensus 258 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~-~q~l~ 335 (588)
++-++..+...+.. +..+++|+||++.+..... ....+..++...... ..++.
T Consensus 238 ---------------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LV 292 (388)
T PRK12723 238 ---------------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLA 292 (388)
T ss_pred ---------------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 12234444444432 3678999999999976321 123444555544433 34688
Q ss_pred Eecccch-HHHHHHHHh
Q 007831 336 FSATMPT-KIQNFARSA 351 (588)
Q Consensus 336 ~SAT~~~-~i~~~~~~~ 351 (588)
+|||... .+.+....+
T Consensus 293 lsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 293 VSSTTKTSDVKEIFHQF 309 (388)
T ss_pred EcCCCCHHHHHHHHHHh
Confidence 8999864 344444444
No 208
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.93 E-value=0.018 Score=67.31 Aligned_cols=137 Identities=16% Similarity=0.108 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007831 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLS-GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~-g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
+++..+......+ ..+++-|.+++..+.+ ++=+++.++.|+|||.+ +-.+..+++. .|..++.++||
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~---------~G~~V~g~ApT 434 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA---------AGYRVVGGALA 434 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------cCCeEEEEcCc
Confidence 4455555444444 3699999999998865 45578889999999944 4444444442 57789999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCc
Q 007831 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEa 308 (588)
---|..+.+ -. ++....+ .+|..-.......+...++||||||
T Consensus 435 gkAA~~L~e----~~---------Gi~a~TI------------------------as~ll~~~~~~~~l~~~~vlVIDEA 477 (1102)
T PRK13826 435 GKAAEGLEK----EA---------GIQSRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEA 477 (1102)
T ss_pred HHHHHHHHH----hh---------CCCeeeH------------------------HHHHhhhccCccCCCCCcEEEEECc
Confidence 776655432 11 2222111 1110001112234566789999999
Q ss_pred ccccccCcHHHHHHHHHhhh-hcceeEEEecc
Q 007831 309 DRLVDLGFEDDIREVFDHFK-AQRQTLLFSAT 339 (588)
Q Consensus 309 h~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT 339 (588)
-.+.. .++..+++... ...++|++.=+
T Consensus 478 sMv~~----~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 478 GMVAS----RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ccCCH----HHHHHHHHHHHhcCCEEEEECCH
Confidence 97643 55666676664 45666665444
No 209
>PRK08181 transposase; Validated
Probab=96.85 E-value=0.013 Score=58.28 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=27.5
Q ss_pred CCCcceeEecCcccccccCc-HHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 297 LDNCRYLTLDEADRLVDLGF-EDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~-~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
+..+++|||||.+......+ ...+-.+++..-....+|+.|-..+...
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 35678999999998654322 1234445544333345666666555543
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=96.82 E-value=0.019 Score=58.79 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=38.2
Q ss_pred CCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh
Q 007831 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++|++|.+.++.. ......++.+.+...+..-++.++||........++.+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 3567999999999863 33445667777666677778888998876655555544
No 211
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.64 E-value=0.005 Score=70.66 Aligned_cols=157 Identities=19% Similarity=0.142 Sum_probs=94.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhccc-------CCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCC
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMM-------MPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGY 251 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~-------~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~ 251 (588)
.|++++....+|+|||..-+.-.+...-..... ........+.+|||||. ++..||+.++.+-+..
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~------ 445 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS------ 445 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc------
Confidence 357889999999999987655544331110000 00001123467999998 6778899989887653
Q ss_pred CCceEEEEEcCcch-HHHHHHHhcCCcEEEeChHHHHHHHHccc--------------CCCCC------cceeEecCccc
Q 007831 252 PDLRTLLCIGGVDM-RSQLEVVKRGVHIVVATPGRLKDMLAKKK--------------MNLDN------CRYLTLDEADR 310 (588)
Q Consensus 252 ~~i~~~~~~gg~~~-~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--------------~~l~~------~~~lViDEah~ 310 (588)
.+++..+.|=... ..+...+ -.+|||+||+..|..-+.... ....+ +=-||+|||+.
T Consensus 446 -~lKv~~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM 523 (1394)
T KOG0298|consen 446 -LLKVLLYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM 523 (1394)
T ss_pred -cceEEEEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh
Confidence 4677777762111 0111222 248999999999876654321 11110 11399999998
Q ss_pred ccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHH
Q 007831 311 LVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 347 (588)
Q Consensus 311 l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~ 347 (588)
+-.. .......+..++.. ..-++|+|+-..+.++
T Consensus 524 vess--sS~~a~M~~rL~~i-n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 524 VESS--SSAAAEMVRRLHAI-NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred hcch--HHHHHHHHHHhhhh-ceeeecCCchhhhhhh
Confidence 8663 25555665555433 3678899986665554
No 212
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.018 Score=59.81 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=17.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~ 201 (588)
.|..+++++|||+|||.....-+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46788999999999997654433
No 213
>PHA02533 17 large terminase protein; Provisional
Probab=96.54 E-value=0.018 Score=63.01 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|.|+|...+..+..++-.++..+=..|||.+....++..+.. ..+..+++++|++.-|..+++.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~---------~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF---------NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh---------CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5789999999887666767788888999997766545444332 2466899999999999999988887765
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHH
Q 007831 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 324 (588)
.+.....+.+ .... ...-.+.+|+.|.+.|-. .....-.+..++++||+|.+.+ +...+..+.
T Consensus 130 ~~P~l~~~~i----~~~~----~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~ 192 (534)
T PHA02533 130 LLPDFLQPGI----VEWN----KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQ 192 (534)
T ss_pred hCHHHhhcce----eecC----ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHH
Confidence 4311100010 0000 000112356666555421 1111222456899999998755 223334444
Q ss_pred Hhhhh--cceeEEEeccc
Q 007831 325 DHFKA--QRQTLLFSATM 340 (588)
Q Consensus 325 ~~~~~--~~q~l~~SAT~ 340 (588)
..+.. ..+++.+|++.
T Consensus 193 p~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 193 PVISSGRSSKIIITSTPN 210 (534)
T ss_pred HHHHcCCCceEEEEECCC
Confidence 33332 23455555543
No 214
>PRK05642 DNA replication initiation factor; Validated
Probab=96.54 E-value=0.0094 Score=58.21 Aligned_cols=45 Identities=18% Similarity=0.436 Sum_probs=29.0
Q ss_pred CCcceeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccch
Q 007831 298 DNCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
..+++||+|++|.+... .+...+-.+++.+......+++|++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35678999999987543 3445566677666554445666666544
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.49 E-value=0.03 Score=49.32 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHH
Q 007831 180 GRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~ 196 (588)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999954
No 216
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.49 E-value=0.18 Score=63.49 Aligned_cols=235 Identities=14% Similarity=0.203 Sum_probs=123.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 165 QPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+++-|.+++..++.. +=+++.++.|+|||.+ +-.+..+.+. .|..+++++||-.-+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~---------~G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE---------QGYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHhcch
Confidence 5889999999999865 4567889999999944 4444444442 4778999999988776655432211
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007831 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
.. ........+..+ .-..|..+|. .....+...++||||||-.+.. ..+..
T Consensus 498 A~-------------------Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~ 548 (1960)
T TIGR02760 498 AS-------------------TFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLK 548 (1960)
T ss_pred hh-------------------hHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHH
Confidence 00 001111111111 1122322332 2333456788999999997643 56677
Q ss_pred HHHhh-hhcceeEEEeccc------chHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHh---hc
Q 007831 323 VFDHF-KAQRQTLLFSATM------PTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL---QK 392 (588)
Q Consensus 323 i~~~~-~~~~q~l~~SAT~------~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l---~~ 392 (588)
++... ....++|++.=+- +..+...+...- -+....... ......+ .+.-.....+...+.... ..
T Consensus 549 Ll~~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~g-v~t~~l~~i-~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 549 LIDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEGG-VTTYAWVDT-KQQKASV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred HHHHHhhcCCEEEEEcChhhcCccccchHHHHHHHCC-CcEEEeecc-cccCcce--eeeccCchHHHHHHHHHHHhccc
Confidence 77655 3567788765442 223333443321 121111111 1111111 111112223222333222 22
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cC------CcEEEEe-CCCCHHHHHHHHHHHhcCC
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLL----KG------VEAVAVH-GGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g------~~~~~ih-g~~~~~~R~~~~~~f~~g~ 444 (588)
....++|+..+..+...|....+. .| +....+. ..++..++... ..|+.|.
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 344689999998888877776643 22 2233332 35666666633 5555543
No 217
>PRK06921 hypothetical protein; Provisional
Probab=96.35 E-value=0.064 Score=53.40 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.++++.|++|+|||...
T Consensus 116 ~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3678999999999999543
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.077 Score=55.06 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=39.1
Q ss_pred EeChHHHHHHHHcccCCCCCcceeEecCcccccccC-cHHHHHHHHHhhhhcceeEEEecccc-hHHHHHHHHhc
Q 007831 280 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQRQTLLFSATMP-TKIQNFARSAL 352 (588)
Q Consensus 280 V~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~~q~l~~SAT~~-~~i~~~~~~~l 352 (588)
+.+|..+.+.+..-.. ..++++|+||-+-+..... ....+..++....+..-++.+|||.. ..+.+.++.+-
T Consensus 302 ~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 302 VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 3467666665543111 1257899999998765322 11233334433333434566898764 45566666553
No 219
>PRK08727 hypothetical protein; Validated
Probab=96.26 E-value=0.033 Score=54.37 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCcceeEecCcccccccC-cHHHHHHHHHhhhhc-ceeEEEecccchHH
Q 007831 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQ-RQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~-~q~l~~SAT~~~~i 344 (588)
.++++||+||+|.+.... ....+-.+++..... .++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 455789999999987543 222333444443322 34444444444443
No 220
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.21 E-value=0.06 Score=56.53 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=50.8
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCc------EEEEeCCCCHHHHHHHHHHHh----cCCcEEE--EEcCccccCCCCC
Q 007831 394 PPPVLIFCENKADVDDIHEYLLLKGVE------AVAVHGGKDQEEREYAISSFK----AGKKDVL--VATDVASKGLDFP 461 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~------~~~ihg~~~~~~R~~~~~~f~----~g~~~vL--VaT~~~~~GlDip 461 (588)
+..++.|..+.-..+.+.......|+- -..+-+.-+..+-..++...+ +|+--|| ||-.-.++|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 456788888887777777666555431 122233333344444555444 4555555 5667778999998
Q ss_pred Ccc--eEEecCCCC
Q 007831 462 DIQ--HVINYDMPA 473 (588)
Q Consensus 462 ~v~--~VI~~~~p~ 473 (588)
+-. .||.++.|.
T Consensus 610 hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 610 HHYGREVIMEGIPY 623 (755)
T ss_pred cccCceEEEEeccc
Confidence 865 899999995
No 221
>PRK12377 putative replication protein; Provisional
Probab=96.17 E-value=0.028 Score=55.17 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007831 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
..++++.|++|+|||...
T Consensus 101 ~~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA 118 (248)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999543
No 222
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.15 E-value=0.1 Score=56.85 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=74.7
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHh----cCCcEEEEEc--CccccCC
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLKGV-------EAVAVHGGKDQEEREYAISSFK----AGKKDVLVAT--DVASKGL 458 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~-------~~~~ihg~~~~~~R~~~~~~f~----~g~~~vLVaT--~~~~~Gl 458 (588)
-.++.+++|++|......+.+.+...|+ ..+.+-...+ -..+++.|. .|.-.+|+|. .-+++||
T Consensus 627 ~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGI 703 (821)
T KOG1133|consen 627 AVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGI 703 (821)
T ss_pred hCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccc
Confidence 3578999999999999999999986654 2233333323 234555554 4555566554 6789999
Q ss_pred CCCC--cceEEecCCCCC--------------------------------hhHHHHHhcccccCCCccEEEEEecCC
Q 007831 459 DFPD--IQHVINYDMPAE--------------------------------IENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 459 Dip~--v~~VI~~~~p~s--------------------------------~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|+.+ .+.||..++|.. +...-|-||||-|--+.-.++++++..
T Consensus 704 NF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 704 NFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred ccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 9988 788999999842 011348899999987777777777654
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.14 E-value=0.07 Score=54.72 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=28.1
Q ss_pred CCCcceeEecCcccccccCc-HHHHHHHHHhhh-hcceeEEEecccchHHH
Q 007831 297 LDNCRYLTLDEADRLVDLGF-EDDIREVFDHFK-AQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~-~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~ 345 (588)
+.++++||||+.+......| ...+-.++...- ....+|+.|-..|..+.
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 45678999999987654332 234444444432 23456665555555543
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=96.13 E-value=0.022 Score=55.43 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCcceeEecCccccccc-CcHHHHHHHHHhhhhc-ceeEEEecccchH
Q 007831 298 DNCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQ-RQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~-~q~l~~SAT~~~~ 343 (588)
.++++||+||+|.+... .+...+..+++..... .+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 46789999999998633 2344555556555443 4566778876554
No 225
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.072 Score=59.79 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC
Q 007831 382 KIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF 460 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDi 460 (588)
....++......++.+||.++.+.....+.+.|+.+ |.++..+|+++++.+|.....+.++|+.+|+|.|..+- =.-+
T Consensus 233 vYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf 311 (730)
T COG1198 233 VYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPF 311 (730)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCch
Confidence 334444444556789999999999999988888665 89999999999999999999999999999999997643 3556
Q ss_pred CCcceEE
Q 007831 461 PDIQHVI 467 (588)
Q Consensus 461 p~v~~VI 467 (588)
+++..+|
T Consensus 312 ~~LGLII 318 (730)
T COG1198 312 KNLGLII 318 (730)
T ss_pred hhccEEE
Confidence 6777766
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.12 E-value=0.014 Score=51.01 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007831 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+..+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567899999999999664
No 227
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.08 E-value=0.023 Score=55.48 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=25.4
Q ss_pred cceeEecCccccccc-CcHHHHHHHHHhhhhc-ceeEEEecccch
Q 007831 300 CRYLTLDEADRLVDL-GFEDDIREVFDHFKAQ-RQTLLFSATMPT 342 (588)
Q Consensus 300 ~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~-~q~l~~SAT~~~ 342 (588)
+++|||||+|.+... .+...+..++..+... ...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999998643 3445555666554332 223445555444
No 228
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.01 E-value=0.11 Score=50.83 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCCcceeEecCcccccccCcHH-HHHHHHHh-hhhcceeEEEecccchHHH
Q 007831 297 LDNCRYLTLDEADRLVDLGFED-DIREVFDH-FKAQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~-~i~~i~~~-~~~~~q~l~~SAT~~~~i~ 345 (588)
+..+++|||||++......|.. .+..|+.. ......+++.|---+..+.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 4578899999999876544433 23334443 2334567776666555544
No 229
>PRK08116 hypothetical protein; Validated
Probab=95.98 E-value=0.089 Score=52.46 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCcceeEecCccc--ccccCcHHHHHHHHHhh-hhcceeEEEecccchHHH
Q 007831 297 LDNCRYLTLDEADR--LVDLGFEDDIREVFDHF-KAQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lViDEah~--l~~~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i~ 345 (588)
+.++++||||+++. ..+|. ...+-.++... .....+|+.|-..|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 35668999999954 33332 23344454432 334567776666665544
No 230
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.96 E-value=0.04 Score=54.42 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=40.6
Q ss_pred cCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEeccc---chHHHHHHHHhcCC
Q 007831 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM---PTKIQNFARSALVK 354 (588)
Q Consensus 294 ~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~---~~~i~~~~~~~l~~ 354 (588)
......++.+|+||||.|....+ ..++..+.......++++.+..+ +..+..-..++..+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred CCCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 34566789999999999987654 56777777777777778777765 34444444444433
No 231
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=0.019 Score=61.13 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred EEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcc
Q 007831 185 GIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVD 264 (588)
Q Consensus 185 i~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~ 264 (588)
.-+.||||||++..-.+| +++... ....|+.|........+...+. .++...- -+.-...+++..
T Consensus 2 f~matgsgkt~~ma~lil-~~y~kg---------yr~flffvnq~nilekt~~nft---d~~s~ky--lf~e~i~~~d~~ 66 (812)
T COG3421 2 FEMATGSGKTLVMAGLIL-ECYKKG---------YRNFLFFVNQANILEKTKLNFT---DSVSSKY--LFSENININDEN 66 (812)
T ss_pred cccccCCChhhHHHHHHH-HHHHhc---------hhhEEEEecchhHHHHHHhhcc---cchhhhH--hhhhhhhcCCce
Confidence 347899999987554444 444421 2235777776555554443332 2111000 000011112211
Q ss_pred hHH----HHHHHhcCCcEEEeChHHHHHHHHcc---cCCC---CCcc-eeEecCccccccc-------------CcHHHH
Q 007831 265 MRS----QLEVVKRGVHIVVATPGRLKDMLAKK---KMNL---DNCR-YLTLDEADRLVDL-------------GFEDDI 320 (588)
Q Consensus 265 ~~~----~~~~l~~~~~IvV~Tp~~L~~~l~~~---~~~l---~~~~-~lViDEah~l~~~-------------~~~~~i 320 (588)
+.- .......+..|+++|.+.|...+.+. .+.+ .+.. +++-||||++... .|+..+
T Consensus 67 i~ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v 146 (812)
T COG3421 67 IEIKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVV 146 (812)
T ss_pred eeeeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHH
Confidence 110 01112346789999999998777653 3333 3333 4567999998642 122322
Q ss_pred HHHHHhhhhcceeEEEecccchH
Q 007831 321 REVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
...+.. +++.-++.||||.|..
T Consensus 147 ~la~~~-nkd~~~lef~at~~k~ 168 (812)
T COG3421 147 KLALEQ-NKDNLLLEFSATIPKE 168 (812)
T ss_pred HHHHhc-CCCceeehhhhcCCcc
Confidence 222222 2233467899999843
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.88 E-value=0.13 Score=48.55 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCcceeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccchHHHHHH
Q 007831 298 DNCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~ 348 (588)
+++++|+||-+-+.... .....++.++....+..-.+.+|||........+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 45678999988765422 2235666677777666667889999876544333
No 233
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.83 E-value=0.059 Score=52.01 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCCcceeEecCcccccccC-cHHHHHHHHHhhh-hcceeEEEecccchHH
Q 007831 297 LDNCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i 344 (588)
+..+++|+||.+|.+.+.. +...+..++..+. ...++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 3578899999999987642 3455566666654 3456777776777654
No 234
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.79 E-value=0.043 Score=51.28 Aligned_cols=48 Identities=21% Similarity=0.098 Sum_probs=32.2
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 183 vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+++.+++|+|||...+--+...+ . .|..++|+.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~----------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A----------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H----------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999976544333332 2 4566888764 46667777666665
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.75 E-value=0.085 Score=47.63 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=26.4
Q ss_pred CCcceeEecCcccccccCc----------HHHHHHHHHhhhhcceeEEEecccch
Q 007831 298 DNCRYLTLDEADRLVDLGF----------EDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~----------~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
....++|+||.+.+.+... ...+..+....+...-+++++...+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 5677999999998764321 23444555555443445555555443
No 236
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.74 E-value=0.038 Score=60.04 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=52.8
Q ss_pred HHHHHHHHHHh-----cC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 007831 168 PIQVQGLPVVL-----SG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEV 238 (588)
Q Consensus 168 ~~Q~~~i~~il-----~g----~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~ 238 (588)
|+|.-.+-.++ .| +.+++.-|=|.|||......++..++-. +..++.++++++++.-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-------g~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-------GEPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-------CccCceEEEEeCCHHHHHHHHHH
Confidence 67887777776 22 4688889999999966544444333221 23578899999999999999999
Q ss_pred HHHHhhc
Q 007831 239 VEQFLTP 245 (588)
Q Consensus 239 ~~~~~~~ 245 (588)
+..+...
T Consensus 74 ~~~~i~~ 80 (477)
T PF03354_consen 74 AKKMIEA 80 (477)
T ss_pred HHHHHHh
Confidence 9998764
No 237
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.96 Score=48.99 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=16.6
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~l 199 (588)
.|+.+.+++|||+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467888899999999966533
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.081 Score=52.26 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=31.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.+.++++.|++|+|||..+...... +.. .|. -++.+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~-l~~----------~g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE-LLK----------AGI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH-HHH----------cCC-eEEEEEHHHHHHHHHHHH
Confidence 7789999999999999554333222 222 233 456667777776654433
No 239
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.63 E-value=0.074 Score=51.42 Aligned_cols=42 Identities=10% Similarity=0.347 Sum_probs=25.0
Q ss_pred cceeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccc
Q 007831 300 CRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 300 ~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
.++|||||+|.+... .+...+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999998653 234555555555433323455566544
No 240
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.59 E-value=0.099 Score=56.39 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCcceeEecCcccccccC-cHHHHHHHHHhhh-hcceeEEEecccchHHH
Q 007831 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~ 345 (588)
..+++|||||+|.+.... ....+-.++..+- ...++++.|...|..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 357799999999986532 2234444444443 33455554444444443
No 241
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.53 E-value=0.089 Score=56.52 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=28.9
Q ss_pred CCCcceeEecCccccccc-CcHHHHHHHHHhhhh-cceeEEEecccchHH
Q 007831 297 LDNCRYLTLDEADRLVDL-GFEDDIREVFDHFKA-QRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i 344 (588)
+.++++||+||+|.+... ...+.+..+++.+.. ..|+|+.|-..|..+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 356789999999988643 233455566665543 345555555555443
No 242
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.47 E-value=0.13 Score=62.61 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007831 165 QPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
.+++-|.+|+..++.. +-+++.+..|+|||.+. -.+..++... ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l--~~i~~~~~~l-----~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF--RAVMSAVNML-----PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH--HHHHHHHHHH-----hhccCceEEEEechHHHHHHH
Confidence 6899999999999954 66888899999999553 2222211110 012467789999997776654
No 243
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.40 E-value=0.48 Score=49.19 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=69.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC-HHHHHHHHHHHHHHhhcccccCCCCceEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS-RELARQTYEVVEQFLTPMRDAGYPDLRTL 257 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~i~~~ 257 (588)
.++-+.++||||.|||....=-+....+.. +....+||-.-| |-=|.. .++.|+.-+ ++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~--------~~~kVaiITtDtYRIGA~E---QLk~Ya~im------~vp~- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK--------KKKKVAIITTDTYRIGAVE---QLKTYADIM------GVPL- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc--------cCcceEEEEeccchhhHHH---HHHHHHHHh------CCce-
Confidence 488999999999999966433222222111 223344555544 332322 244444333 3333
Q ss_pred EEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEE
Q 007831 258 LCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLF 336 (588)
Q Consensus 258 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~ 336 (588)
.+|-+|.-|...+. .+.++++|.||=+-+=.. .-....+...+..-....-.+.+
T Consensus 264 --------------------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvl 319 (407)
T COG1419 264 --------------------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVL 319 (407)
T ss_pred --------------------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEE
Confidence 34445555544443 356678888887766321 11223444555444344456788
Q ss_pred ecccch-HHHHHHHHhc
Q 007831 337 SATMPT-KIQNFARSAL 352 (588)
Q Consensus 337 SAT~~~-~i~~~~~~~l 352 (588)
|||.-. .+......+-
T Consensus 320 sat~K~~dlkei~~~f~ 336 (407)
T COG1419 320 SATTKYEDLKEIIKQFS 336 (407)
T ss_pred ecCcchHHHHHHHHHhc
Confidence 888753 4445555543
No 244
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.38 E-value=0.57 Score=49.90 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=36.3
Q ss_pred eChHHHHHHHHcccCCCCCcceeEecCccccccc-CcHHHHHHHHHh-hhhcceeEEEecccch-HHHHHHHHh
Q 007831 281 ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL-GFEDDIREVFDH-FKAQRQTLLFSATMPT-KIQNFARSA 351 (588)
Q Consensus 281 ~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~-~~~~~q~l~~SAT~~~-~i~~~~~~~ 351 (588)
.++..+...+.. +..+++|+||-+-+.... .....+..++.. ..+....+++|||... .+......+
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 345555455542 346799999998764321 112344444442 1223447888998764 444444444
No 245
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.33 E-value=0.31 Score=48.41 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=69.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEE-cCC-H-HHHHHHHHHHHHHhhcccccCCCCce
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIV-CPS-R-ELARQTYEVVEQFLTPMRDAGYPDLR 255 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil-~Pt-r-~La~Q~~~~~~~~~~~~~~~~~~~i~ 255 (588)
.+..+.+++++|+|||..+..-+... .. .+..+.++ +.+ | ..+.|+. .+...+ ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~----------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~------~~- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG----------KKKTVGFITTDHSRIGTVQQLQ----DYVKTI------GF- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH----------cCCeEEEEecCCCCHHHHHHHH----HHhhhc------Cc-
Confidence 55788999999999997665443322 11 23444444 322 2 3444433 332211 22
Q ss_pred EEEEEcCcchHHHHHHHhcCCcEEE-eChHHHHHHHHcccCCCCCcceeEecCcccccccC-cHHHHHHHHHhhhhccee
Q 007831 256 TLLCIGGVDMRSQLEVVKRGVHIVV-ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQRQT 333 (588)
Q Consensus 256 ~~~~~gg~~~~~~~~~l~~~~~IvV-~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~~q~ 333 (588)
.+.. .+|..+.+.+..- .....+++|+||-+=+..... ....+..++....+..-+
T Consensus 132 ---------------------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~ 189 (270)
T PRK06731 132 ---------------------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIC 189 (270)
T ss_pred ---------------------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEE
Confidence 2222 3455555544321 112457899999998864321 123344444444444446
Q ss_pred EEEecccc-hHHHHHHHHhc
Q 007831 334 LLFSATMP-TKIQNFARSAL 352 (588)
Q Consensus 334 l~~SAT~~-~~i~~~~~~~l 352 (588)
+.+|||.. ..+.+.++.+-
T Consensus 190 LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 190 LTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred EEEcCccCHHHHHHHHHHhC
Confidence 77899864 46666666653
No 246
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.30 E-value=0.47 Score=52.49 Aligned_cols=153 Identities=12% Similarity=0.164 Sum_probs=84.4
Q ss_pred CcHHHHHHHHHHh---cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 166 PTPIQVQGLPVVL---SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 166 p~~~Q~~~i~~il---~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
|.|.=.+-|..++ ..+-.++.+|=|-|||.+..+.+...+.. .+..++|.+|...-+.++++.++.+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHHH
Confidence 4444444444444 56778889999999997765554433321 3578999999999999999999998
Q ss_pred hhcccc-cCCCCc-eEEEEEcCcch---HHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCc
Q 007831 243 LTPMRD-AGYPDL-RTLLCIGGVDM---RSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 243 ~~~~~~-~~~~~i-~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~ 316 (588)
+..+.. .+++.. ++..+.||... ... .....| ..|.+.+-. .+...-..++++|+|||.-+.+
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p-~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~--- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISD-PAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP--- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecC-cccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH---
Confidence 875531 122222 22223332110 000 000001 122222210 1222223568999999999876
Q ss_pred HHHHHHHHHhhh-hcceeEEEeccc
Q 007831 317 EDDIREVFDHFK-AQRQTLLFSATM 340 (588)
Q Consensus 317 ~~~i~~i~~~~~-~~~q~l~~SAT~ 340 (588)
+.+..++-.+. ....++++|.+.
T Consensus 309 -~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 -GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred -HHHHHHHHHHccCCCceEEEeCCC
Confidence 33344443333 244566666665
No 247
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.27 E-value=0.06 Score=57.08 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=77.7
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH-HHHHHHHHHHHHhhcccccCCCCceEEEEE
Q 007831 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE-LARQTYEVVEQFLTPMRDAGYPDLRTLLCI 260 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~-La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (588)
-.++.+..|||||.+..+-++..++.. ..+..++++-|+.. |..-++..+...+..+ ++....-.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~------g~~~~~~~ 68 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--------KKQQNILAARKVQNSIRDSVFKDIENLLSIE------GINYEFKK 68 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHc------CChhheee
Confidence 357889999999999888887777653 13567899989887 6666777777665543 22111111
Q ss_pred cCcchHHHHHHHhc-CCcEEEeCh-HHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhh--hcceeEEE
Q 007831 261 GGVDMRSQLEVVKR-GVHIVVATP-GRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK--AQRQTLLF 336 (588)
Q Consensus 261 gg~~~~~~~~~l~~-~~~IvV~Tp-~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~--~~~q~l~~ 336 (588)
...+. .+. +.. |..|++..- +...+ + .....+.++.+|||..+.. ..+..++..+. .....+++
T Consensus 69 ~~~~~--~i~-~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~ 136 (396)
T TIGR01547 69 SKSSM--EIK-ILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIF 136 (396)
T ss_pred cCCcc--EEE-ecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEE
Confidence 11100 000 111 345555442 11111 1 1223368999999999854 34555554443 22224788
Q ss_pred ecccchH
Q 007831 337 SATMPTK 343 (588)
Q Consensus 337 SAT~~~~ 343 (588)
|.+|+..
T Consensus 137 t~NP~~~ 143 (396)
T TIGR01547 137 SSNPESP 143 (396)
T ss_pred EcCcCCC
Confidence 8888654
No 248
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.25 E-value=0.13 Score=54.64 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=25.4
Q ss_pred CcceeEecCcccccccC-cHHHHHHHHHhhh-hcceeEEEecccchHH
Q 007831 299 NCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKI 344 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i 344 (588)
.+++|||||+|.+.... ....+-.++..+. ...++++.|...|..+
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 46799999999986542 2233444444442 3355554444344443
No 249
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.24 E-value=0.077 Score=59.89 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHH
Q 007831 158 LKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYE 237 (588)
Q Consensus 158 l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~ 237 (588)
+....-..+++-|.+++-. ...++++.|..|||||.+.+--+. +++... ...+..+|+++.|+..|..+.+
T Consensus 189 f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~a-yLl~~~------~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 189 FSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAG-WLLARG------QAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHH-HHHHhC------CCCHHHeEEEeccHHHHHHHHH
Confidence 3333335789999999853 346789999999999977544443 333321 0134479999999999999999
Q ss_pred HHHHHhh
Q 007831 238 VVEQFLT 244 (588)
Q Consensus 238 ~~~~~~~ 244 (588)
++...+.
T Consensus 260 RL~~~lg 266 (684)
T PRK11054 260 RIRERLG 266 (684)
T ss_pred HHHHhcC
Confidence 8887653
No 250
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.29 Score=55.29 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=23.2
Q ss_pred eCCCCHHHHHHHHHHHhcCC-cEEEEEcCcc---ccCCCCCC
Q 007831 425 HGGKDQEEREYAISSFKAGK-KDVLVATDVA---SKGLDFPD 462 (588)
Q Consensus 425 hg~~~~~~R~~~~~~f~~g~-~~vLVaT~~~---~~GlDip~ 462 (588)
+..+.+.-+..+.+.|.... .-+|+..+.+ ..|+|.+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~L~~h~~~~l~~~~~~~~~ 500 (767)
T PRK14723 459 LRAMAQAVRAAVRRDVAAACDRYVLALHGTLALKVAGLPGAQ 500 (767)
T ss_pred HHHHhHhHHHHHHHHHHhcccceEEEeecccccCCCCCCcch
Confidence 34556666666777777543 3477777763 36666654
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.14 E-value=0.12 Score=55.28 Aligned_cols=50 Identities=12% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCcceeEecCcccccccC-cHHHHHHHHHhhh-hcceeEEEecccchHHHHH
Q 007831 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHFK-AQRQTLLFSATMPTKIQNF 347 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~ 347 (588)
.++++|++||+|.+.... ....+..+++.+. ...|+++.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999987543 2344555555442 3456666665666665544
No 252
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.06 E-value=0.088 Score=57.90 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCCcceeEecCcccccccC-cHHHHHHHHHhhhh-cceeEEEecccchHHH
Q 007831 297 LDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKA-QRQTLLFSATMPTKIQ 345 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~ 345 (588)
+.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3557899999999986532 33455566665544 4566665555555543
No 253
>PRK09183 transposase/IS protein; Provisional
Probab=95.04 E-value=0.13 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=18.7
Q ss_pred HhcCCCEEEEecCCchHhHHHHH
Q 007831 177 VLSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~~l 199 (588)
+..|.++++.||+|+|||.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH
Confidence 44688999999999999955443
No 254
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.04 E-value=0.15 Score=49.51 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=26.5
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcce-eEEEecccch
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ-TLLFSATMPT 342 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q-~l~~SAT~~~ 342 (588)
..++|||||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 46689999999875432 2344455554444433 4777777654
No 255
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.00 E-value=0.028 Score=55.39 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHh
Q 007831 136 EDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMH 207 (588)
Q Consensus 136 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~ 207 (588)
.-+|..+.+|+++++|+-+.+.+... ..=+++.+|||||||.. +..++.++..
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 34889999999999999888744321 11367789999999955 5666666655
No 256
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.00 E-value=0.12 Score=58.65 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEec
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 469 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~ 469 (588)
.+.++||.++++.-+..+.+.|... |..+..+||+++..+|...+..+.+|..+|+|+|..+.. +.+.++.+||.-
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEE
Confidence 4678999999999999999999764 788999999999999999999999999999999975432 567778887743
No 257
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.94 E-value=0.14 Score=51.06 Aligned_cols=55 Identities=20% Similarity=0.061 Sum_probs=32.3
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+..|.-+++.|++|+|||...+--+...+.. .+..++|+.- -.-..++...+...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----------~g~~vl~iS~-E~~~~~~~~r~~~~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ----------HGVRVGTISL-EEPVVRTARRLLGQ 81 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----------cCceEEEEEc-ccCHHHHHHHHHHH
Confidence 3467788999999999996544333333211 2556777763 23344444444433
No 258
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.94 E-value=0.064 Score=60.78 Aligned_cols=71 Identities=24% Similarity=0.137 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.+++-|.+++.. ....++|.|..|||||.+...-+...+.+.. -....+|+|+.|+..|.++.+++.+++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999865 3568999999999999885555544432211 1234689999999999999999987754
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.93 E-value=0.43 Score=47.64 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCcceeEecCccccccc-CcHHHHHHHHHhhh------hcceeEEEecccchHHHHHHHHh
Q 007831 298 DNCRYLTLDEADRLVDL-GFEDDIREVFDHFK------AQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~------~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++|++|=+-++... .....+..+.+..+ +..-++.++||........+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45678888888775421 12234455554444 44457788888765544444433
No 260
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.90 E-value=0.28 Score=52.60 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=29.3
Q ss_pred CcceeEecCcccccccC-cHHHHHHHHHhhhh-cceeEEEecccchHHHHHH
Q 007831 299 NCRYLTLDEADRLVDLG-FEDDIREVFDHFKA-QRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~-~~q~l~~SAT~~~~i~~~~ 348 (588)
.+++|++||+|.+.+.. ....+..++..+.. ..++|+.|...|..+..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 57799999999886542 22344455554433 3455555555565554443
No 261
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.87 E-value=0.019 Score=52.94 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=52.6
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007831 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 ii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
++.|+=|-|||.+.-+.+...+ . .....++|.+|+.+-++.+++.+..-+..+ +++.....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-~---------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~------~~~~~~~~--- 61 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-Q---------KGKIRILVTAPSPENVQTLFEFAEKGLKAL------GYKEEKKK--- 61 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-S--------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H---------hcCceEEEecCCHHHHHHHHHHHHhhcccc------cccccccc---
Confidence 5789999999966544433221 1 122578999999999888777666554433 11110000
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccc
Q 007831 264 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
...........+..|-+..|+.+... ....++||||||=.+. .+.+..++...+ .++||.|..
T Consensus 62 ~~~~~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 62 RIGQIIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp -----------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred ccccccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 00000001112457778888655221 2245899999998763 245555544332 567788873
No 262
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.81 E-value=0.27 Score=60.60 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
..+++.|.+|+..++.+ +-+++.+..|+|||.+ +-.+..++... ....+..++.++||---|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~--l~~v~~~~~~l-----~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ--FRAVMSAVNTL-----PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH--HHHHHHHHHHh-----hcccCceEEEECCcHHHHHHH
Confidence 36899999999999975 5678889999999954 33332222210 012456789999998776654
No 263
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.76 E-value=0.13 Score=56.05 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=64.6
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~ 468 (588)
..+.++||.++++.-+..+++.|+.. |..+..+||+++..+|.+......+|+.+|+|+|..+-. ..++++.+||.
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 45678999999999999999999764 778999999999999999999999999999999976433 45677887773
No 264
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.71 E-value=0.16 Score=61.60 Aligned_cols=124 Identities=23% Similarity=0.226 Sum_probs=78.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
++|+-|.++|. ..++++++.|..|||||.+.+--++..+... ..-..+|+|+=|+..|.++.+++.+.+.
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 36889999997 3688999999999999988666666554431 1223589999999999999998888654
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc--ceeEecCccc
Q 007831 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC--RYLTLDEADR 310 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~--~~lViDEah~ 310 (588)
..... .| .......+...+ ...-|+|-..+..-+.+.....-.+ .+=|.||...
T Consensus 71 ~~~~~-~p--------~~~~L~~q~~~~---~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 KALQQ-EP--------NSKHLRRQLALL---NTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHhc-Cc--------hhHHHHHHHhhc---cCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 32111 00 001112222222 3567899888865555433222122 3455777765
No 265
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.67 E-value=0.19 Score=55.27 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=85.6
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEE
Q 007831 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTL 257 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~ 257 (588)
+..+-.++..|=-.|||.... +++..++.. -.|-.+++.+|.+..++.+++++..++... ++.-.+-
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s--------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~----f~~~~v~ 318 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALAT--------FRGIKIGYTAHIRKATEPVFEEIGARLRQW----FGASRVD 318 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHh--------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhh----cchhhee
Confidence 355778889999999997655 565555432 257889999999999999999999987632 2222222
Q ss_pred EEEcCcchHHHHHHHhcC--CcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhh-hhcceeE
Q 007831 258 LCIGGVDMRSQLEVVKRG--VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-KAQRQTL 334 (588)
Q Consensus 258 ~~~gg~~~~~~~~~l~~~--~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~l 334 (588)
.+.| ... .-.+.+| ..|.++|- -..+...=..++++|||||+-+.+..+ ..++-.+ ..+.++|
T Consensus 319 ~vkG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al----~~ilp~l~~~n~k~I 384 (738)
T PHA03368 319 HVKG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAV----QTIMGFLNQTNCKII 384 (738)
T ss_pred eecC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHH----HHHHHHHhccCccEE
Confidence 2222 111 0011223 25666641 112233344788999999999887433 3333222 1367899
Q ss_pred EEecccch
Q 007831 335 LFSATMPT 342 (588)
Q Consensus 335 ~~SAT~~~ 342 (588)
++|.|...
T Consensus 385 ~ISS~Ns~ 392 (738)
T PHA03368 385 FVSSTNTG 392 (738)
T ss_pred EEecCCCC
Confidence 99988654
No 266
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.62 E-value=0.18 Score=52.80 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=35.0
Q ss_pred CcceeEecCccccccc-CcHHHHHHHHHhhhhc-ceeEEEecccchHHHH
Q 007831 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQ-RQTLLFSATMPTKIQN 346 (588)
Q Consensus 299 ~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~-~q~l~~SAT~~~~i~~ 346 (588)
++++++||.++.+... .+...+-.+++.+... .|+++.|..+|..+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 7889999999998875 3556666666666543 4778888778776553
No 267
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.61 E-value=0.11 Score=53.01 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=41.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 156 KKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 156 ~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
+.+...|. +++.|...|..+. .+.+++++++||||||.. +-.++..+... ...-+++.+=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~--------~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS--------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC--------CCCceEEEecCCccc
Confidence 34455554 5677877776655 667999999999999944 34444443211 123467777777776
No 268
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.58 E-value=0.3 Score=44.37 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=39.8
Q ss_pred CCCCcceeEecCcccccccCc--HHHHHHHHHhhhhcceeEEEecccchHHHHHH
Q 007831 296 NLDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 296 ~l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~ 348 (588)
....+++||+||+-..+..|+ .+.+..+++.-+...-+|+.+-.+|+.+.+.+
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 356789999999999887775 35666677766666677887778888876654
No 269
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.52 E-value=0.13 Score=52.79 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=16.1
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~l 199 (588)
.++|+.+|.|+|||..+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4899999999999976644
No 270
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.51 E-value=0.36 Score=54.11 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=88.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCC--CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007831 155 LKKLKAKGIVQPTPIQVQGLPVVLSGR--DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il~g~--dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
-..+.....+.+..-|.+.+..++..+ -+++.|.=|=|||.+.-+.+... .+. .....++|.+|+.+-+
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~-~~~--------~~~~~iiVTAP~~~nv 274 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAA-ARL--------AGSVRIIVTAPTPANV 274 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHH-HHh--------cCCceEEEeCCCHHHH
Confidence 344555555566666666777777543 57777999999998877666332 221 1145799999999998
Q ss_pred HHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccccc
Q 007831 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 233 ~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~ 312 (588)
+..++-+.+-+..+ |+. -.+..-..|.... .-.+...|=+.+|.... ...++||||||=.+.
T Consensus 275 ~~Lf~fa~~~l~~l---g~~-~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp 336 (758)
T COG1444 275 QTLFEFAGKGLEFL---GYK-RKVAPDALGEIRE----VSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP 336 (758)
T ss_pred HHHHHHHHHhHHHh---CCc-cccccccccceee----ecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC
Confidence 88887766655544 111 1111111010000 00012345566664331 116799999998763
Q ss_pred ccCcHHHHHHHHHhhhhcceeEEEeccc
Q 007831 313 DLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 313 ~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
.+.+..++..+ +.++||.|+
T Consensus 337 ----lplL~~l~~~~----~rv~~sTTI 356 (758)
T COG1444 337 ----LPLLHKLLRRF----PRVLFSTTI 356 (758)
T ss_pred ----hHHHHHHHhhc----CceEEEeee
Confidence 35555555544 368888887
No 271
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.49 E-value=0.091 Score=53.67 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=43.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHH-hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 155 LKKLKAKGIVQPTPIQVQGLPVV-LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~i-l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
++.|...|+ +++.|...+..+ ..+++++++++|||||| .++-.++..+... ....++++|-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~--------~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ--------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc--------CCCceEEEEcCCCcc
Confidence 455555664 567788877654 47789999999999999 4444444433211 123467777777776
No 272
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.46 E-value=0.1 Score=59.29 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=64.8
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-ccCCCCCCcceEE
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-SKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~-~~GlDip~v~~VI 467 (588)
.+.+++|.+||+.-+..+++.+.. .|+.+..+||+++..+|...+..+.+|+.+|+|+|... ...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 466899999999988888777654 47899999999999999999999999999999999754 4567788888877
No 273
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.42 E-value=0.096 Score=60.03 Aligned_cols=72 Identities=24% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..++|-|.+++.. ....++|.|..|||||.+..--+. +++.... -....+|+|+-|+..|.++.+++.+++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIA-WLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3689999999864 346899999999999977544444 3333210 123468999999999999999998876
Q ss_pred h
Q 007831 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 4
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=0.64 Score=48.93 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCcceeEecCcccccc-cCcHHHHHHHHHhhh---hcceeEEEecccch-HHHHHHHHh
Q 007831 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFK---AQRQTLLFSATMPT-KIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~---~~~q~l~~SAT~~~-~i~~~~~~~ 351 (588)
..+++|+||=+-+... ..-...+..++..+. +...++.+|||... .+...+..+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4568899997766532 212233444444432 12346788999876 454554444
No 275
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.39 E-value=0.29 Score=49.77 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=28.1
Q ss_pred CCCcceeEecCccccc--ccCcHHHHHHHHHh-hhhcceeEEEecccchHHHH
Q 007831 297 LDNCRYLTLDEADRLV--DLGFEDDIREVFDH-FKAQRQTLLFSATMPTKIQN 346 (588)
Q Consensus 297 l~~~~~lViDEah~l~--~~~~~~~i~~i~~~-~~~~~q~l~~SAT~~~~i~~ 346 (588)
+..+++|||||...-. +|.....+..|+.. +.....+++.|--.+..+.+
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 4578899999997643 23221223444443 23455667666665555443
No 276
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.38 E-value=0.26 Score=55.46 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=69.4
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCC
Q 007831 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK-G-VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDF 460 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~-g-~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDi 460 (588)
+..++......++++||.++.+..+..+.+.|... | ..+..+|++++..+|.+......+|+.+|+|.|..+.- .-+
T Consensus 177 yl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~ 255 (665)
T PRK14873 177 LAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APV 255 (665)
T ss_pred HHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-ecc
Confidence 33444444456788999999999999999999765 4 67999999999999999999999999999999986542 566
Q ss_pred CCcceEEe
Q 007831 461 PDIQHVIN 468 (588)
Q Consensus 461 p~v~~VI~ 468 (588)
++...||.
T Consensus 256 ~~LgLIIv 263 (665)
T PRK14873 256 EDLGLVAI 263 (665)
T ss_pred CCCCEEEE
Confidence 67777773
No 277
>PF13173 AAA_14: AAA domain
Probab=94.36 E-value=0.34 Score=42.30 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=24.7
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEec
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSA 338 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SA 338 (588)
.-.+|++||+|.+.+ |...+..+.... .+.++++.+.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 456899999999976 447777777654 3445544433
No 278
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.36 E-value=0.16 Score=53.74 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007831 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
..++++.||+|+|||.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999653
No 279
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.34 E-value=0.12 Score=54.59 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHH
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~ 198 (588)
.-+-......+..+..++++++.+|+|+|||..+.
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34555666667777789999999999999996653
No 280
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.32 E-value=0.099 Score=59.91 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++-|.+++.. ...+++|.|..|||||.+..--+. +++.... -....+|+|+-|+..|..+.+++.+++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIA-WLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4689999999864 356899999999999977544443 4443210 123468999999999999999998876
Q ss_pred h
Q 007831 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 74 ~ 74 (715)
T TIGR01075 74 G 74 (715)
T ss_pred c
Confidence 4
No 281
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.31 E-value=0.33 Score=48.53 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=33.9
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcc-cCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEM-MMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~-~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+++++|+|+.|||.+. ........ ........-|.+++-+|...-....+..+-..
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 58999999999999642 33222111 11111122467788888877766666555443
No 282
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.16 E-value=0.33 Score=48.80 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.3
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~ 198 (588)
++.+++++|||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999996643
No 283
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.98 E-value=0.084 Score=58.27 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH-HHHHH
Q 007831 165 QPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY-EVVEQ 241 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~-~~~~~ 241 (588)
..+|+|.+.+..+-.. +.++++.++-+|||.+.+.. +...+.. ....+|++.||..+|..+. ..+.-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~-~g~~i~~---------~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNW-IGYSIDQ---------DPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhh-ceEEEEe---------CCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 5689999999887743 68999999999999854443 3332221 2234799999999999877 44555
Q ss_pred HhhcccccCCCCceEEEEE---cCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccc
Q 007831 242 FLTPMRDAGYPDLRTLLCI---GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~---gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~ 313 (588)
++... |.++-.+.- ...........+. |..+.++.... ...+.-..++++++||.|.+..
T Consensus 86 mi~~s-----p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 86 MIRAS-----PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhC-----HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 54432 222211111 0001111111122 33444443211 1233445788999999999853
No 284
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.96 E-value=0.33 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=16.7
Q ss_pred CCCEEEEecCCchHhHHHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~ 201 (588)
|+-+.+++|||+|||.+...-+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 5567888999999997754433
No 285
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=0.17 Score=52.01 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHhcC----CCEEEEecCCchHhHHHHH
Q 007831 165 QPTPIQVQGLPVVLSG----RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g----~dvii~a~TGsGKTl~~~l 199 (588)
.++|||...|..+... +-.++.+|.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 4589999999998843 2578999999999965543
No 286
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.88 E-value=0.19 Score=50.98 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=41.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 155 LKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
++.|.+.|. +++-|...+..+. .+++++++++||||||.. +-.++..+... ...-+++++=.+.|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~--------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN--------DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc--------CCCceEEEECCchhh
Confidence 455555553 4555666665544 667999999999999944 33344333210 124467888888776
No 287
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.87 E-value=0.35 Score=46.79 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=67.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.-+++.+++|+|||...+--+...+.. .|-++++++- .+-..++.+.+..+.-.+..... .-....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~----------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~-~g~l~~ 85 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN----------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYED-SGKLKI 85 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH----------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHH-TTSEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh----------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhh-cCCEEE
Confidence 45788999999999996655444444432 1456788773 45556666666665211100000 001111
Q ss_pred EEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccC----cHHHHHHHHHhhhhcceeE
Q 007831 259 CIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG----FEDDIREVFDHFKAQRQTL 334 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~----~~~~i~~i~~~~~~~~q~l 334 (588)
+......... . -.+++.+...+...... ...+.+|||-...+.... +...+..++..++....+.
T Consensus 86 ~d~~~~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ 154 (226)
T PF06745_consen 86 IDAFPERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTT 154 (226)
T ss_dssp EESSGGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEE
T ss_pred Eecccccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 1111000000 0 12333443333321111 122789999988883222 3345556666666666677
Q ss_pred EEeccc
Q 007831 335 LFSATM 340 (588)
Q Consensus 335 ~~SAT~ 340 (588)
++++..
T Consensus 155 llt~~~ 160 (226)
T PF06745_consen 155 LLTSEM 160 (226)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 777774
No 288
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.86 E-value=0.34 Score=61.11 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHH--HHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFV--LPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~--lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
..+++.|.+|+..++.+ +-+++.++.|+|||.... +-.+..++. ..+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---------hcCCeEEEEeChHHHHHHH
Confidence 46899999999999865 456777999999995531 122222222 2467889999997776654
No 289
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.79 E-value=0.44 Score=49.12 Aligned_cols=40 Identities=13% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecc
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT 339 (588)
...++|||||+|.+... ....+..++...+...++|+ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45679999999988643 22445555555555555444 444
No 290
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.77 E-value=0.51 Score=44.10 Aligned_cols=143 Identities=12% Similarity=0.064 Sum_probs=75.1
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH-HHHHHHHHHhhcccccCCCCceE
Q 007831 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR-QTYEVVEQFLTPMRDAGYPDLRT 256 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~-Q~~~~~~~~~~~~~~~~~~~i~~ 256 (588)
+....+++..++|.|||.+++--++..+- .|.+|+|+-=.+--.. -=...++++ +++..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g-----------~G~~V~ivQFlKg~~~~GE~~~l~~l---------~~v~~ 79 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG-----------HGKKVGVVQFIKGAWSTGERNLLEFG---------GGVEF 79 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH-----------CCCeEEEEEEecCCCccCHHHHHhcC---------CCcEE
Confidence 35678999999999999988777776653 4667777642221100 001112221 12222
Q ss_pred EEEEcCcchH--HHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCc--HHHHHHHHHhhhhcce
Q 007831 257 LLCIGGVDMR--SQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKAQRQ 332 (588)
Q Consensus 257 ~~~~gg~~~~--~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q 332 (588)
...-.+.... +..... ......+... +..+.-..+++||+||+-..++.|+ .+.+..++..-+...-
T Consensus 80 ~~~g~~~~~~~~~~~e~~--------~~~~~~~~~a-~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~e 150 (191)
T PRK05986 80 HVMGTGFTWETQDRERDI--------AAAREGWEEA-KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQH 150 (191)
T ss_pred EECCCCCcccCCCcHHHH--------HHHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCE
Confidence 2111110000 000000 0011111111 1223346789999999999998885 3456666666555556
Q ss_pred eEEEecccchHHHHHHH
Q 007831 333 TLLFSATMPTKIQNFAR 349 (588)
Q Consensus 333 ~l~~SAT~~~~i~~~~~ 349 (588)
+|+.--.+|+.+.+.+.
T Consensus 151 vVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 151 VVITGRGAPRELIEAAD 167 (191)
T ss_pred EEEECCCCCHHHHHhCc
Confidence 66666667777766553
No 291
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.75 E-value=0.18 Score=57.34 Aligned_cols=70 Identities=21% Similarity=0.132 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007831 166 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 166 p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.+.. .....+|+|+.|+..|.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-------YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899998764 4568999999999999775554444332211 1234689999999999999999987654
No 292
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.74 E-value=0.24 Score=47.36 Aligned_cols=19 Identities=26% Similarity=0.245 Sum_probs=15.0
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~l 199 (588)
.++|+.+|.|.|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 3799999999999966433
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.70 E-value=0.67 Score=45.04 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=33.6
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
..|.-+++.+++|+|||...+-.+.. ... ++.++++++. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~----------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ----------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh----------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 35778899999999999664333332 222 3567888884 44445655556554
No 294
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.63 E-value=0.75 Score=44.92 Aligned_cols=38 Identities=26% Similarity=0.146 Sum_probs=25.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
.|.-+++.|++|+|||...+--+++.+.. .+..+++++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----------~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----------QGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCceEEEe
Confidence 56678889999999995544333333322 256678887
No 295
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.54 E-value=0.24 Score=57.03 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=28.2
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...+++||||+|+|...++ +.+.+++...+....+|+.+ |-+.++
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~~kL 163 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEPDKV 163 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CChhhh
Confidence 5678999999999986543 44555555545555444443 544443
No 296
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.53 E-value=0.6 Score=42.95 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=39.1
Q ss_pred CCCcceeEecCcccccccCcH--HHHHHHHHhhhhcceeEEEecccchHHHHHHH
Q 007831 297 LDNCRYLTLDEADRLVDLGFE--DDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~--~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~ 349 (588)
-..+++||+||+-..++.|+. +.+..+++.-|....+|+..-.+|+.+.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 467899999999998888753 46666676666666677777777887766553
No 297
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.53 E-value=0.94 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.222 Sum_probs=17.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~ 201 (588)
.++-+++++|||+|||....--+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46678899999999996644433
No 298
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.53 E-value=0.68 Score=40.05 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=13.9
Q ss_pred CcceeEecCcccccccC
Q 007831 299 NCRYLTLDEADRLVDLG 315 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~ 315 (588)
...+|++||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 34789999999998764
No 299
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.52 E-value=1.2 Score=47.31 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=29.2
Q ss_pred CcceeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh
Q 007831 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 299 ~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
.+++||+|=+-++... ..-..+..+.....+..-++.++||......+.++.+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 4567777777664321 1223444444444455556778888765555555444
No 300
>PLN03025 replication factor C subunit; Provisional
Probab=93.46 E-value=0.62 Score=47.78 Aligned_cols=41 Identities=15% Similarity=0.359 Sum_probs=24.8
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccc
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
..+++|+||+|.|.... ...+..++...+.... ++++++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~~ 139 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNTS 139 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCCc
Confidence 57899999999987543 2444555554444444 44444443
No 301
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.45 E-value=0.52 Score=48.12 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHH
Q 007831 164 VQPTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~---dvii~a~TGsGKTl~~~ 198 (588)
..++|||..++..+. +|+ -+++.+|.|+||+..+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 468999999998876 343 58899999999996543
No 302
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.40 E-value=0.69 Score=45.92 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=16.3
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~l 199 (588)
..++++.||+|+|||.++-+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 35899999999999966544
No 303
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.40 E-value=0.45 Score=46.49 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=37.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.|..+++.+++|+|||...+--+...+ . .|-+++|++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~----------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H----------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 467889999999999976554444433 2 356788888 5567777777777664
No 304
>PTZ00293 thymidine kinase; Provisional
Probab=93.32 E-value=0.63 Score=44.26 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=24.8
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
|+=-++.+|++||||.-. |-.+..... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteL-Lr~i~~y~~----------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL-MRLVKRFTY----------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHH-HHHHHHHHH----------cCCceEEEEec
Confidence 444578999999999543 333333222 46678888886
No 305
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.29 E-value=0.21 Score=56.29 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc-cCCCCCCcceEE
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS-KGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~-~GlDip~v~~VI 467 (588)
.+.+++|.+||+.-+..+++.+.. .|+.+..+||+++..+|...++...+|+.+|+|+|..+- ..+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 467899999999999888877654 379999999999999999999999999999999998653 567788888877
No 306
>PHA00729 NTP-binding motif containing protein
Probab=93.28 E-value=0.77 Score=44.16 Aligned_cols=75 Identities=8% Similarity=0.133 Sum_probs=40.2
Q ss_pred CcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccC-cH----HHHHHHHHhhhhcceeEEEecccchHHHHHHHH
Q 007831 276 VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG-FE----DDIREVFDHFKAQRQTLLFSATMPTKIQNFARS 350 (588)
Q Consensus 276 ~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~----~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~ 350 (588)
...++.+.+.|.+.+....-....++++|+||+-.-.... |. .....+...+....+++.+...-|..+...++.
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 3455556666655554322122346789999943222110 11 112234444555567788887777777666665
No 307
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.23 E-value=1 Score=43.68 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=32.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|..+++.+++|+|||...+.-+...+ . ++..++++.- .+.+.++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~----------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R----------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h----------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 467889999999999965543333322 2 3446777764 34455655555554
No 308
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.22 E-value=0.22 Score=51.97 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHH
Q 007831 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAM 206 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~ 206 (588)
|..+.++.++++++.+++.+. ..+..+++++|||||||.. +-.++.++.
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 444446777777776544332 1344689999999999944 445555543
No 309
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.16 E-value=1.3 Score=44.04 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHh----cCC-CEEEEecCCchHhHHHH
Q 007831 165 QPTPIQVQGLPVVL----SGR-DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~-dvii~a~TGsGKTl~~~ 198 (588)
-+++.+.+++..+. .+. .+++.||+|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35666666666553 233 57889999999996643
No 310
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.14 E-value=1.6 Score=46.62 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=32.4
Q ss_pred cceeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh
Q 007831 300 CRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 300 ~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
.++||||.+-++... ..-..+..+.....+..-++.++||......+.++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 378999999665321 1223455555555566667888888876655555553
No 311
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.14 E-value=1.4 Score=46.75 Aligned_cols=20 Identities=35% Similarity=0.255 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.|.-+.+++|||+|||....
T Consensus 190 ~g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678889999999996654
No 312
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.08 E-value=0.63 Score=49.62 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=23.0
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccc
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
.-.+|+|||+|++.. .....++..+.. ..++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCCC
Confidence 456899999999753 233344444433 44666666643
No 313
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.06 E-value=0.49 Score=48.38 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=24.6
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
..++|||||+|.+........+..++...+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999843223345566666655566555533
No 314
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.89 E-value=1.4 Score=50.24 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=17.4
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFD 325 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~ 325 (588)
....+|||||+|.+...+ ...+..+++
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR 894 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFD 894 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHH
Confidence 345689999999998642 233444444
No 315
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.88 E-value=1.1 Score=41.78 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=51.9
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007831 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
=.++.+|+.||||.-.+--+- ... -.|.++++.-|- +.... +...+.-.-
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~-~~~----------~~g~~v~vfkp~----------iD~R~---------~~~~V~Sr~ 55 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRAR-RYK----------EAGMKVLVFKPA----------IDTRY---------GVGKVSSRI 55 (201)
T ss_pred EEEEEccCcCcchHHHHHHHH-HHH----------HcCCeEEEEecc----------ccccc---------ccceeeecc
Confidence 357889999999975333222 221 146778888886 22221 111111112
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccccc
Q 007831 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 262 g~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~ 312 (588)
|... .-++|-++..+.+.+........ ++.|.||||+-+.
T Consensus 56 G~~~----------~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~ 95 (201)
T COG1435 56 GLSS----------EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFD 95 (201)
T ss_pred CCcc----------cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCC
Confidence 2221 24666677777777765443332 8899999999854
No 316
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.82 E-value=1.2 Score=47.54 Aligned_cols=50 Identities=24% Similarity=0.110 Sum_probs=28.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.|.=+++.|++|+|||...+--+...+.. .+..++|++ .-.-+.|+..++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~----------~g~~v~~fS-lEm~~~~l~~Rl 242 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR----------EGKPVLFFS-LEMSAEQLGERL 242 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCcEEEEE-CCCCHHHHHHHH
Confidence 45667788999999995544443333322 244566665 333344444443
No 317
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.82 E-value=1.9 Score=45.88 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=15.2
Q ss_pred CEEEEecCCchHhHHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~ 201 (588)
-+++++++|+|||.+..--+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47788999999997654433
No 318
>PRK10867 signal recognition particle protein; Provisional
Probab=92.78 E-value=1.7 Score=46.31 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=14.9
Q ss_pred CEEEEecCCchHhHHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~ 201 (588)
-+++++++|+|||.+..--+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 46788999999997654433
No 319
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.12 Score=51.39 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=18.0
Q ss_pred hcCCCEEEEecCCchHhHHHHH
Q 007831 178 LSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~l 199 (588)
++..|+++++|||||||+.+.-
T Consensus 95 L~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHH
Confidence 4557999999999999976644
No 320
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.69 E-value=1.8 Score=44.89 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=61.2
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH-HHHHHHHHhhcccccCCCCceEEEEEcC
Q 007831 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ-TYEVVEQFLTPMRDAGYPDLRTLLCIGG 262 (588)
Q Consensus 184 ii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q-~~~~~~~~~~~~~~~~~~~i~~~~~~gg 262 (588)
++.++.|+|||.+..+.++..++.. ..+..++++ ||..-+.. +............. ...+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~--------~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR--------PPGRRVIIA-STYRQARDIFGRFWKGIIELLPS--WFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS--------SS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T--TTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC--------CCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH--hcCcccccCCCC
Confidence 5779999999988877777666552 112455555 55554444 33322222111111 001111111111
Q ss_pred cchHHHHHHHhcCCcEEEeChHHH--HHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEeccc
Q 007831 263 VDMRSQLEVVKRGVHIVVATPGRL--KDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 263 ~~~~~~~~~l~~~~~IvV~Tp~~L--~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
.-. +.+|..|.+.+-..- ..-+. =..++++++||+-.+.+..+...+........... .+++|.|+
T Consensus 70 ~~~------~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~ 137 (384)
T PF03237_consen 70 KII------LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPP 137 (384)
T ss_dssp EEE------ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE--
T ss_pred cEE------ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCC
Confidence 000 034566666663211 01111 15677999999988765433333333322222222 22444433
Q ss_pred --chHHHHHHHHhcCCC
Q 007831 341 --PTKIQNFARSALVKP 355 (588)
Q Consensus 341 --~~~i~~~~~~~l~~p 355 (588)
......+........
T Consensus 138 ~~~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 138 NPGGWFYEIFQRNLDDD 154 (384)
T ss_dssp -SSSHHHHHHHHHHCTS
T ss_pred CCCCceeeeeehhhcCC
Confidence 334444555554444
No 321
>PRK04195 replication factor C large subunit; Provisional
Probab=92.62 E-value=0.68 Score=50.41 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007831 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+.+++.||+|+|||.+.
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999654
No 322
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.62 E-value=0.63 Score=50.64 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.2
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp 200 (588)
+.+++.||.|+|||.++.+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999776443
No 323
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.61 E-value=0.6 Score=54.58 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=64.8
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-ccCCCCCCcceEE
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-SKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~-~~GlDip~v~~VI 467 (588)
.+.+++|.+||..-|...++.+... ++.+..++|..+..++..+++.+.+|+.+|+|+|..+ ...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3578999999999999998887653 6788899999999999999999999999999999844 4668888888877
No 324
>CHL00181 cbbX CbbX; Provisional
Probab=92.52 E-value=1.3 Score=44.50 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=17.0
Q ss_pred CCCEEEEecCCchHhHHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp 200 (588)
|.++++.+|+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 567999999999999776443
No 325
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.45 E-value=0.63 Score=49.04 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=86.2
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007831 153 PILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 153 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
.+++.++++ +..+...|..+.-..-.|.- .+.+-.|||||.+..+-+.. ++. .++..+.+|-+=|+.|+
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~--lh~-------knPd~~I~~Tfftk~L~ 219 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE--LHS-------KNPDSRIAFTFFTKILA 219 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH--Hhc-------CCCCceEEEEeehHHHH
Confidence 455556554 66677788887666666665 66788999999664443332 221 23566899999999999
Q ss_pred HHHHHHHHHHhhccccc--CCCCceEEEEEcCcchHHHHHHHhcCCc---EEEeC----hHHHHHHHHcccCCCCCccee
Q 007831 233 RQTYEVVEQFLTPMRDA--GYPDLRTLLCIGGVDMRSQLEVVKRGVH---IVVAT----PGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 233 ~Q~~~~~~~~~~~~~~~--~~~~i~~~~~~gg~~~~~~~~~l~~~~~---IvV~T----p~~L~~~l~~~~~~l~~~~~l 303 (588)
.++...+.+|+-..... ....+-++.-.||.+..........-|+ +-++- -..+..-+....-+..-+++|
T Consensus 220 s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~i 299 (660)
T COG3972 220 STMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYI 299 (660)
T ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEE
Confidence 99999999987432211 1113444444566554332222211111 11110 011111122222335678899
Q ss_pred EecCcccccc
Q 007831 304 TLDEADRLVD 313 (588)
Q Consensus 304 ViDEah~l~~ 313 (588)
.+||++-..+
T Consensus 300 lIDE~QDFP~ 309 (660)
T COG3972 300 LIDESQDFPQ 309 (660)
T ss_pred EecccccCCH
Confidence 9999998654
No 326
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.43 E-value=0.32 Score=55.87 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..++|-|.+++.. ...+++|.|..|||||.+..--+...+.+... ....+|+++-|+..|..+.+.+.+++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i-------~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV-------APWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC-------CHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 4689999999875 35689999999999997765554433322110 12368999999999999999888775
Q ss_pred h
Q 007831 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 4
No 327
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.42 E-value=0.23 Score=46.22 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=26.2
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007831 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
+-+++++++.+++|+|||..+...+ ..+.. .|..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~-~~~~~----------~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIA-NEAIR----------KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHH-HHHHH----------TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHH-HHhcc----------CCcceeEe-ecCceecc
Confidence 3468899999999999996654433 33333 35556665 44455444
No 328
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.28 Score=52.53 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.3
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp 200 (588)
.+++.||.|+|||.++.+-
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999776443
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.40 E-value=2.4 Score=38.97 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=26.8
Q ss_pred CCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh
Q 007831 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
...+++|+|....+.. ......+..+........-++.++|+.+....+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 3566888888887531 11223333333332334445566666555444444443
No 330
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.37 E-value=0.27 Score=56.01 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=55.2
Q ss_pred HhhcCCCCEEEEeCccccHHHHHHHHHHcC-----CcEEE-EeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc
Q 007831 389 CLQKTPPPVLIFCENKADVDDIHEYLLLKG-----VEAVA-VHGGKDQEEREYAISSFKAGKKDVLVATDVA 454 (588)
Q Consensus 389 ~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-----~~~~~-ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~ 454 (588)
.+...+.++++.+||..-+.++++.|...+ +.+.. |||.++..++..++++|.+|..+|||+|+.+
T Consensus 120 ~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 120 YLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 345567899999999999988888886642 44333 9999999999999999999999999999865
No 331
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=0.43 Score=51.56 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
....+++||||+|.|....+ +.+.+.+...++.. +++|.+|-+.++
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v-~fIlatte~~Kl 159 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHV-KFILATTEVKKI 159 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCe-EEEEEeCChHHH
Confidence 35778999999999876433 23333334333333 344444544443
No 332
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=0.28 Score=56.11 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...+++||||||+|....+ +.+.+++...+....+|+ ..|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFIL-aTTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLL-ATTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEE-ECCCchhc
Confidence 4578999999999965333 333444444334444444 34544443
No 333
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.10 E-value=0.27 Score=49.79 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=43.1
Q ss_pred CCCCCcHHHHHHHHHHhcCC-CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007831 162 GIVQPTPIQVQGLPVVLSGR-DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~-dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.|..+++-|...+-.+..++ |+++++.||||||.. |-++.... ...-+++.+=-|.||--
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i----------~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI----------DSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC----------CCcccEEEEeehhhhcc
Confidence 46788999999998888766 999999999999943 22222111 12227888888888743
No 334
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.06 E-value=0.21 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=18.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~ 205 (588)
.+.-+++++|||||||.. +-.++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 566799999999999954 33344443
No 335
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.05 E-value=0.26 Score=54.44 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=58.0
Q ss_pred HHHHhcCCcEEEEEcCccccCCCCCCcceE--------EecCCCCChhHHHHHhcccccCCC-ccEEEEEecCC--CChh
Q 007831 437 ISSFKAGKKDVLVATDVASKGLDFPDIQHV--------INYDMPAEIENYVHRIGRTGRCGK-TGIATTFINKN--QSET 505 (588)
Q Consensus 437 ~~~f~~g~~~vLVaT~~~~~GlDip~v~~V--------I~~~~p~s~~~y~qriGRagR~g~-~g~~~~~~~~~--~~~~ 505 (588)
-++|.+|+..|-|-+.+++-||-+..-+-| |...+|||.+.-+|.+|||.|.++ .+--++|+-.+ -+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 467999999999999999999999765444 467899999999999999999976 45556665432 2344
Q ss_pred HHHHHHHHH
Q 007831 506 TLLDLKHLL 514 (588)
Q Consensus 506 ~~~~l~~~l 514 (588)
+..-+.+-|
T Consensus 930 FAS~VAKRL 938 (1300)
T KOG1513|consen 930 FASIVAKRL 938 (1300)
T ss_pred HHHHHHHHH
Confidence 444444444
No 336
>PRK06904 replicative DNA helicase; Validated
Probab=92.04 E-value=3.1 Score=45.11 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=56.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+|+.|.||.|||... +-+...+... .+..++|++ .-.-..|+..++-..... +...-
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~~---------~g~~Vl~fS-lEMs~~ql~~Rlla~~s~--------v~~~~ 280 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAMA---------SEKPVLVFS-LEMPAEQIMMRMLASLSR--------VDQTK 280 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHh---------cCCeEEEEe-ccCCHHHHHHHHHHhhCC--------CCHHH
Confidence 3445666799999999644 4333332211 244456554 445555666555443221 11111
Q ss_pred E-Ec-CcchHHH------HHHHhcCCcEEE-----eChHHHHHHHHcccCCCCCcceeEecCccccccc
Q 007831 259 C-IG-GVDMRSQ------LEVVKRGVHIVV-----ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 259 ~-~g-g~~~~~~------~~~l~~~~~IvV-----~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~ 314 (588)
+ .| ..+..+. ...+....++.| .|+..+...+.+-......+++||||=.+.|...
T Consensus 281 i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 281 IRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred hccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 1 22 1222111 122323344666 3555554433321111235789999999888643
No 337
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.01 E-value=0.094 Score=63.07 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=76.6
Q ss_pred CEEEEeCccccHHHHHHHHHHcC-CcEEEEeCCCC-----------HHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc
Q 007831 396 PVLIFCENKADVDDIHEYLLLKG-VEAVAVHGGKD-----------QEEREYAISSFKAGKKDVLVATDVASKGLDFPDI 463 (588)
Q Consensus 396 ~viIF~~s~~~~~~l~~~L~~~g-~~~~~ihg~~~-----------~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v 463 (588)
..|+||+....+..+.+.++... ..+..+.|.+. +..+.+++..|....+.+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999998888888887652 23333444332 1245688999999999999999999999999999
Q ss_pred ceEEecCCCCChhHHHHHhcccccCC
Q 007831 464 QHVINYDMPAEIENYVHRIGRTGRCG 489 (588)
Q Consensus 464 ~~VI~~~~p~s~~~y~qriGRagR~g 489 (588)
+.|+.++.|.....|+|..||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999996653
No 338
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.98 E-value=0.24 Score=51.04 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=28.6
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
+..+.+++++++||||||.. +-.++..+ ....+++.+=.+.||
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i-----------~~~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI-----------PPQERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc-----------CCCCCEEEECCCccc
Confidence 44788999999999999944 33333322 123356777777776
No 339
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=1.8 Score=45.10 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.1
Q ss_pred CCEEEEecCCchHhHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~ 198 (588)
.|+++-|+||+|||.+.-
T Consensus 43 ~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK 60 (366)
T ss_pred ccEEEECCCCCCHhHHHH
Confidence 479999999999996643
No 340
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.85 E-value=4.3 Score=41.47 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCcceeEecCcccccccC-cHHHHHHHHHhh------hhcceeEEEecccchHHHHHHHHh
Q 007831 298 DNCRYLTLDEADRLVDLG-FEDDIREVFDHF------KAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~------~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++||+|=+-++.... .-..+..+.+.+ .+..-++.++||.......-+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 567889999888765321 223444444322 123346888999765433334433
No 341
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=0.47 Score=52.52 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=25.6
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccch
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
...+++||||+|.|....+ +.+.+.+...+...-+|+.+ |-+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChH
Confidence 5678999999999976543 33444444444444344433 5443
No 342
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.83 E-value=0.52 Score=48.47 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=27.7
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
+..+++++++++||||||.. +-.++..+ ...-+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i-----------p~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI-----------PAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC-----------CCCCeEEEecCCCcc
Confidence 34788999999999999943 34444332 123456666555555
No 343
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.78 E-value=0.56 Score=44.73 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=28.0
Q ss_pred HHHcccCCC--CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEE
Q 007831 289 MLAKKKMNL--DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLL 335 (588)
Q Consensus 289 ~l~~~~~~l--~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~ 335 (588)
++.++++.+ .+.+.||+||||.|.+- -...++..+....+..++.+
T Consensus 101 ~FAQ~kv~lp~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 101 MFAQKKVTLPPGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred HHHHhhccCCCCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhh
Confidence 334444444 56778999999999763 33455555555554444443
No 344
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.76 E-value=0.63 Score=52.37 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=25.5
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
...+++||||+|.|....| +.+.+++...+... +++|++|-+..
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v-~FILaTtd~~K 161 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHV-KFILATTDPQK 161 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCe-EEEEEECChhh
Confidence 4578999999999976443 33333444433333 34445554433
No 345
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.64 E-value=1.4 Score=47.44 Aligned_cols=58 Identities=26% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHhc-----CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 173 GLPVVLS-----GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 173 ~i~~il~-----g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+..++. |.-+++.+++|+|||...+--+.... . .+.+++|+.- .+-..|+...+.++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~----------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-A----------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-h----------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 4455553 45678889999999965443333222 1 3557888874 45566776666555
No 346
>PRK13764 ATPase; Provisional
Probab=91.62 E-value=0.37 Score=53.25 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=19.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~ 205 (588)
.++++++++|||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999954 34444444
No 347
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.61 E-value=2 Score=41.77 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=32.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.+++|+|||.....-+...+ . .+.+++|+.=- +-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-~----------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-K----------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-h----------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 456788889999999966544333322 1 35667777654 3445666666665
No 348
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.58 E-value=2 Score=42.51 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=61.9
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|.=+++.|.||.|||...+-.+.+.+.. .+..++|++.= .-..++..++-..... +...-+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~----------~~~~vly~SlE-m~~~~l~~R~la~~s~--------v~~~~i 79 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN----------GGYPVLYFSLE-MSEEELAARLLARLSG--------VPYNKI 79 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT----------TSSEEEEEESS-S-HHHHHHHHHHHHHT--------STHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh----------cCCeEEEEcCC-CCHHHHHHHHHHHhhc--------chhhhh
Confidence 3456777999999996655444444432 24677887752 1222333333322211 111111
Q ss_pred EcCcchHHHHH-------HHhcCCcEEE-e----ChHHHHHHHHcccCCCCCcceeEecCccccccc----CcHHHHHHH
Q 007831 260 IGGVDMRSQLE-------VVKRGVHIVV-A----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL----GFEDDIREV 323 (588)
Q Consensus 260 ~gg~~~~~~~~-------~l~~~~~IvV-~----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~----~~~~~i~~i 323 (588)
..+.-..+.+. .+.. ..+.| . |++.+.+.+..-......+++||||=.|.|... +....+..+
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i 158 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEI 158 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHH
T ss_pred hccccCHHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHH
Confidence 11211122221 2222 23443 3 344555554432222277889999999998874 233445555
Q ss_pred HHhh
Q 007831 324 FDHF 327 (588)
Q Consensus 324 ~~~~ 327 (588)
...+
T Consensus 159 ~~~L 162 (259)
T PF03796_consen 159 SREL 162 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 349
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.44 E-value=0.21 Score=54.18 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=39.1
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+++++||||||||..+++|.+... .+ -+||.=|--+|...+....++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~------------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY------------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc------------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 5799999999999999999987421 22 5788889999988877766665
No 350
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.43 E-value=0.5 Score=56.58 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=63.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-cccCCCCCCcceEE
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-ASKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GlDip~v~~VI 467 (588)
.+.+++|.|||+.-|..+++.+... ++.+..++|+.+..++..++..+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999998888653 467888999999999999999999999999999964 34557777888877
No 351
>PRK08506 replicative DNA helicase; Provisional
Probab=91.40 E-value=1.9 Score=46.76 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=55.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|.||.|||...+--+ ..+.. .+..++|++ .-.-+.|+..++-.....+ ....++
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia-~~~~~----------~g~~V~~fS-lEMs~~ql~~Rlla~~s~v---~~~~i~--- 252 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMA-LKALN----------QDKGVAFFS-LEMPAEQLMLRMLSAKTSI---PLQNLR--- 252 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHH-HHHHh----------cCCcEEEEe-CcCCHHHHHHHHHHHhcCC---CHHHHh---
Confidence 34556777999999995544433 33322 244566654 3345556555554432211 000111
Q ss_pred EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCcccccc
Q 007831 259 CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~ 313 (588)
.|..+..+. ...+.+ ..+.|- |+..+...+.+-......+++||||=.+.|..
T Consensus 253 -~~~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 253 -TGDLDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred -cCCCCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 122222111 122222 345553 44455444432111123578999999998763
No 352
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.33 E-value=0.74 Score=50.65 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=71.1
Q ss_pred HHHHHHHHhh--cCCCCEEEEeCcccc----HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-
Q 007831 382 KIVYLLECLQ--KTPPPVLIFCENKAD----VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA- 454 (588)
Q Consensus 382 k~~~ll~~l~--~~~~~viIF~~s~~~----~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~- 454 (588)
.+..++..+. ..+.++...+||--- .+.+.++|...|+.+..+.|.+....|..++....+|.++++|.|-++
T Consensus 297 TvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 297 TVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 3445555543 356799999999654 455556666679999999999999999999999999999999999887
Q ss_pred ccCCCCCCcceEEec
Q 007831 455 SKGLDFPDIQHVINY 469 (588)
Q Consensus 455 ~~GlDip~v~~VI~~ 469 (588)
...+++.++-.||.=
T Consensus 377 Qd~V~F~~LgLVIiD 391 (677)
T COG1200 377 QDKVEFHNLGLVIID 391 (677)
T ss_pred hcceeecceeEEEEe
Confidence 578999999888843
No 353
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.32 E-value=0.16 Score=53.66 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=37.3
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+++++|+||||||.++++|.+... ...++|+=|.-++...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999998877431 235788889999988776655544
No 354
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.29 E-value=0.38 Score=49.46 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHHHHHHHcccCCCCCcceeEecCcccccccC----cHHHHHHHHHhh-----hhcceeEEEecccchH
Q 007831 284 GRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG----FEDDIREVFDHF-----KAQRQTLLFSATMPTK 343 (588)
Q Consensus 284 ~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~----~~~~i~~i~~~~-----~~~~q~l~~SAT~~~~ 343 (588)
..|.|+-.+....| +|.|||||.++-.- ..+..+..++.+ ...+.+++.=||..+.
T Consensus 432 H~lFDWakkS~rGL----llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 432 HKLFDWAKKSRRGL----LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHHHHHHhhcccce----EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 34445554432222 68999999977421 223444444433 2345688888887554
No 355
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.28 E-value=0.27 Score=53.62 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHH
Q 007831 164 VQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAM 206 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~ 206 (588)
.+|+.||.+.+..+. .|+=-|+-.|||+|||+..+-.++..+-
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 478999999988766 6887788899999999987777766543
No 356
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.16 E-value=2.3 Score=48.72 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=28.2
Q ss_pred ceeEecCcccccccCc----HHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 301 RYLTLDEADRLVDLGF----EDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 301 ~~lViDEah~l~~~~~----~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
.+|+|||+|.+...|- ..++..++..+-...++.+..||-++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999976542 2344455554444455667777766554
No 357
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.14 E-value=4.6 Score=37.15 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=33.9
Q ss_pred cCCCCCcceeEecCcccccccCcH--HHHHHHHHhhhhcceeEEEecccchHHHHHH
Q 007831 294 KMNLDNCRYLTLDEADRLVDLGFE--DDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 294 ~~~l~~~~~lViDEah~l~~~~~~--~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~ 348 (588)
.+.-..+++||+||+-...+.|+. +.+..++..-+...-+|+.--.+|+.+.+.+
T Consensus 91 ~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 91 AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 344567899999999999888863 4556666655566667777777777776655
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.06 E-value=0.61 Score=52.46 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=37.8
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccc
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
...-|+|+|..|++.+...-.-++.++++.|...+.++.|-+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 34458999999999998777889999999999998888888765
No 359
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.04 E-value=1.2 Score=48.30 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=56.0
Q ss_pred CCCCCHHHH-HHHHHCCCCCCcH----HHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007831 147 DMRFPEPIL-KKLKAKGIVQPTP----IQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 147 ~~~l~~~l~-~~l~~~g~~~p~~----~Q~~~i~~il--~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
+.+...+++ ..|.+.--.+++. +|.+==..|. .++-+|+++..|||||.+++--+.-.++.. +.++ .+
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~--R~~l---~~ 260 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGY--RGPL---QA 260 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcc--cccc---cc
Confidence 445555554 4555553334433 3444333344 456688899999999988766554444432 1222 23
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 220 PFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+||+.|.+-+..-+.+.+-.++
T Consensus 261 k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 261 KPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred CceEEEcCcHHHHHHHHHhchhhc
Confidence 349999999999887777666653
No 360
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.97 E-value=1.6 Score=49.83 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=25.7
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHH
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQ 345 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~ 345 (588)
...+|||||+|++... ....++..+. ..++++.+||-++...
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChHh
Confidence 3568999999997542 2233333333 3567788887655433
No 361
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=0.81 Score=49.87 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=19.3
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhh
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 329 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~ 329 (588)
....++|||||+|.+.. ..+..+++.+..
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEe 142 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEE 142 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHh
Confidence 35678999999998754 334455555543
No 362
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=90.87 E-value=0.66 Score=50.00 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=34.5
Q ss_pred eChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHH
Q 007831 281 ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQN 346 (588)
Q Consensus 281 ~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~ 346 (588)
-+||-...+-.. .+.....++.|+|||-.-.+.+.+..+-.+++..+ +-++|-.--+.+..
T Consensus 571 LS~GEqQRLa~A-RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 571 LSPGEQQRLAFA-RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLWK 631 (659)
T ss_pred cCHHHHHHHHHH-HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHHh
Confidence 355544332221 33466788999999999887665555555555443 44445444444333
No 363
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.85 E-value=0.53 Score=52.25 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=25.5
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccch
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
...+++||||+|+|....+ +.+.+++...+.... ++|++|-+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~-FILaTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVK-FLFATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcE-EEEEECChH
Confidence 4568999999999876443 344445554444443 444445433
No 364
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.84 E-value=1.5 Score=48.72 Aligned_cols=74 Identities=19% Similarity=0.370 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+|+..|.++++.+.+. ++.+..++|+.+..++...+ . ...+|+||| +.+. .
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-r 319 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-R 319 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-c
Confidence 4668999999999999998888765 67899999998776654443 2 357999999 6654 4
Q ss_pred cCCCCCcceeEecC
Q 007831 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lViDE 307 (588)
.+++..+++||.-+
T Consensus 320 GIDip~V~~VInyd 333 (572)
T PRK04537 320 GLHIDGVKYVYNYD 333 (572)
T ss_pred CCCccCCCEEEEcC
Confidence 67788888887543
No 365
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.84 E-value=3 Score=44.95 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=72.9
Q ss_pred CCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH
Q 007831 189 TGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ 268 (588)
Q Consensus 189 TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 268 (588)
.+.||+-.-++++.+.+-. +-.|.+||.+-+.+-|.|.+..+.. ++++++.+++|..+....
T Consensus 366 vF~gse~~K~lA~rq~v~~---------g~~PP~lIfVQs~eRak~L~~~L~~---------~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVAS---------GFKPPVLIFVQSKERAKQLFEELEI---------YDNINVDVIHGERSQKQR 427 (593)
T ss_pred eeeecchhHHHHHHHHHhc---------cCCCCeEEEEecHHHHHHHHHHhhh---------ccCcceeeEecccchhHH
Confidence 4668887777766655433 3467889999999999999988872 458999999998665443
Q ss_pred H---HHHhc-CCcEEEeChHHHHHHHHcccCCCCCcceeEecCccc
Q 007831 269 L---EVVKR-GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 310 (588)
Q Consensus 269 ~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~ 310 (588)
- ..++. ...++||| +++.++ +.+..+.+||-+..-.
T Consensus 428 de~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 3 33433 47899999 788765 7899999999876543
No 366
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.78 E-value=1.4 Score=48.15 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+++||||+|.|....| +.+.+.+...+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4578999999999976544 34444555544455444443
No 367
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.77 E-value=0.37 Score=45.16 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHH
Q 007831 165 QPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 165 ~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~ 197 (588)
..++-|...+.... .|..+++++|||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 45677777776655 6889999999999999553
No 368
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.73 E-value=2.1 Score=39.13 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecc
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT 339 (588)
...+++|||+||.|.... .+.+.+.+..-+....+++.|..
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECC
Confidence 568899999999987643 25555666665555555555444
No 369
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.70 E-value=2.1 Score=42.35 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=25.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEc
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVC 226 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~ 226 (588)
.|.-+++.+++|+|||...+--+...+ . .|.+++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~----------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S----------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h----------CCCcEEEEE
Confidence 456788899999999966544333322 1 355778877
No 370
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.66 E-value=3.2 Score=43.37 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.+++|+|||...+-.+. .+.. .+.+++|+.-. +-..|+...+.++
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~-~~a~----------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAA-RLAK----------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH-HHHh----------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 346678889999999965443332 2211 34568888654 4456666555554
No 371
>PRK05748 replicative DNA helicase; Provisional
Probab=90.58 E-value=2.6 Score=45.42 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=54.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.-+++.|+||+|||... +-++..+.. ..+..++|++ .-.-..|+..++-..... +....
T Consensus 202 ~G~livIaarpg~GKT~~a-l~ia~~~a~---------~~g~~v~~fS-lEms~~~l~~R~l~~~~~--------v~~~~ 262 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFA-LNIAQNVAT---------KTDKNVAIFS-LEMGAESLVMRMLCAEGN--------IDAQR 262 (448)
T ss_pred CCceEEEEeCCCCCchHHH-HHHHHHHHH---------hCCCeEEEEe-CCCCHHHHHHHHHHHhcC--------CCHHH
Confidence 4456777899999999554 444433221 1244455553 444555655555332211 11110
Q ss_pred -EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCccccc
Q 007831 259 -CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 259 -~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~ 312 (588)
..|.....+. ...+. +..+.|. |+..+...+.+-......+++||||=.+.|.
T Consensus 263 i~~~~l~~~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 263 LRTGQLTDDDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred hhcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1122222111 11222 2345553 4445544433211111257899999999885
No 372
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=0.88 Score=49.19 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=14.7
Q ss_pred CEEEEecCCchHhHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~l 199 (588)
.+++.||.|+|||.++.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999976544
No 373
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=90.48 E-value=2 Score=48.11 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.0
Q ss_pred EEEEecCCchHhHHHHHHH
Q 007831 183 MIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 183 vii~a~TGsGKTl~~~lp~ 201 (588)
.|+.||.|+|||.++.+-+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999997765443
No 374
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.47 E-value=2.2 Score=44.57 Aligned_cols=138 Identities=17% Similarity=0.095 Sum_probs=60.8
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007831 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
-.++.+|.|+||+..+.. +...++..........+..+..+-+|+.-..|.+ +. ....|++..+.-..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~----i~-------~~~HPDl~~i~~~~ 110 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR----IA-------AGAHGGLLTLERSW 110 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCCccccccccccCCCCChHHHH----HH-------ccCCCCeEEEeccc
Confidence 588999999999966433 3344443210000000011334555665444333 22 22345665543211
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecc
Q 007831 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 262 g~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT 339 (588)
..... . ....|.|-..-.+.+.+... ......+++||||+|.|.... .+.+.+.+...+....+|++|..
T Consensus 111 ~~~~~-~-----~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 111 NEKGK-R-----LRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ccccc-c-----ccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 00000 0 01223332222222222221 223567899999999986432 13334444443334434444433
No 375
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.46 E-value=2.2 Score=45.17 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCCCEEEEeCccccHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc------cccCCCCCC
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLL----KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV------ASKGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~------~~~GlDip~ 462 (588)
.++-.+|.|+|+.-|..++...++ .|+.++++|||.+.-++...++ -..-++|||+- --.++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 345578889999988888766654 4889999999999888766654 35678999962 236788888
Q ss_pred cceEE
Q 007831 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+.++|
T Consensus 371 vS~LV 375 (731)
T KOG0339|consen 371 VSYLV 375 (731)
T ss_pred eeEEE
Confidence 87766
No 376
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=2.7 Score=41.68 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=82.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-----CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007831 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGR-----DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~-----dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
-.|++.-=-+.-.++|++.=+ -|+- +|.++.|+ .+++.+|.|+||+ |+.-++..
T Consensus 130 VkWsDVAGLE~AKeALKEAVI---LPIK---FPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVAT------------- 188 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVI---LPIK---FPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVAT------------- 188 (439)
T ss_pred CchhhhccchhHHHHHHhhee---eccc---chhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHh-------------
Confidence 355554323344455655422 1221 46677764 5899999999999 54444421
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
+..-+.|-+.+..|+..|.-+-+++.+.+ ..+...
T Consensus 189 EAnSTFFSvSSSDLvSKWmGESEkLVknL----------------------------------------FemARe----- 223 (439)
T KOG0739|consen 189 EANSTFFSVSSSDLVSKWMGESEKLVKNL----------------------------------------FEMARE----- 223 (439)
T ss_pred hcCCceEEeehHHHHHHHhccHHHHHHHH----------------------------------------HHHHHh-----
Confidence 22246777888888776665555553321 122211
Q ss_pred CCcceeEecCcccccccC---cHHHHHHHHHhhh--------hcceeEEEecccchHHHHH-HHHhcCCCeEE
Q 007831 298 DNCRYLTLDEADRLVDLG---FEDDIREVFDHFK--------AQRQTLLFSATMPTKIQNF-ARSALVKPVTV 358 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~---~~~~i~~i~~~~~--------~~~q~l~~SAT~~~~i~~~-~~~~l~~p~~i 358 (588)
+..+.|.|||+|.|.... -.+..+.|-..+- ..--++.+.||-.+.+.+- ++.-+.+.+.|
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 234579999999877532 1233444433221 2234788999987765443 34434444443
No 377
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.25 E-value=0.72 Score=47.78 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=25.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+..+++++|||||||... -.++..+.. ..+.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~---------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK---------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc---------CCCCEEEEEcCChhh
Confidence 4567899999999999553 334433321 123456666555444
No 378
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.17 E-value=3.7 Score=44.96 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=85.8
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEE
Q 007831 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTL 257 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~ 257 (588)
+..+-.+..-|=--|||. |+.|++..++.. -.|-++.|++.-+-.++-+++++...+... +|.-++.
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s--------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrw----F~~~~vi 266 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN--------IIGISIGYVAHQKHVSQFVLKEVEFRCRRM----FPRKHTI 266 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh--------hcCceEEEEeeHHHHHHHHHHHHHHHHhhh----cCcccee
Confidence 455677888899999994 578888887764 268889999999988888777776554332 3333332
Q ss_pred EEEcCcchHHHHHHHhcCCcEEEeChHHH-----HHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhh-hcc
Q 007831 258 LCIGGVDMRSQLEVVKRGVHIVVATPGRL-----KDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-AQR 331 (588)
Q Consensus 258 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-----~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~-~~~ 331 (588)
..-++ .|.+.-|+.= ......+...-.++.+++|||||-+.. +.+..|+-.+. .++
T Consensus 267 ~~k~~--------------tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~ 328 (668)
T PHA03372 267 ENKDN--------------VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTT 328 (668)
T ss_pred eecCc--------------EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCc
Confidence 22221 3444433221 011223445556788999999998754 45566666553 456
Q ss_pred eeEEEecccc
Q 007831 332 QTLLFSATMP 341 (588)
Q Consensus 332 q~l~~SAT~~ 341 (588)
.+|+.|.|-+
T Consensus 329 KiIfISS~Ns 338 (668)
T PHA03372 329 KIIFISSTNT 338 (668)
T ss_pred eEEEEeCCCC
Confidence 7888888853
No 379
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.12 E-value=0.34 Score=53.80 Aligned_cols=49 Identities=24% Similarity=0.171 Sum_probs=40.7
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
++++++||||||||..+++|.+... +.-+||+=|--|+...+....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5899999999999999999988642 234788999999998888777665
No 380
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.03 E-value=1.3 Score=41.06 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhc-ceeEEEec
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSA 338 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~-~q~l~~SA 338 (588)
+...+++++||...-+|......+...+..+... .++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3567899999999998877666666666665433 55555544
No 381
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.02 E-value=1 Score=46.94 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.8
Q ss_pred CCEEEEecCCchHhHHH
Q 007831 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999653
No 382
>PRK04328 hypothetical protein; Provisional
Probab=90.01 E-value=2.5 Score=41.66 Aligned_cols=53 Identities=17% Similarity=0.035 Sum_probs=35.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.|.-+++.+++|+|||...+--+...+ . +|..++|+. +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~----------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h----------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 467788899999999965544343332 1 355677776 5556666777676663
No 383
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.96 E-value=0.83 Score=47.39 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+++||||||.|..... +.+.+.+...+....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 34678999999999865332 33444455434444445554
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=89.84 E-value=0.72 Score=44.88 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHCCCCC----------CcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCC
Q 007831 149 RFPEPILKKLKAKGIVQ----------PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGE 218 (588)
Q Consensus 149 ~l~~~l~~~l~~~g~~~----------p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 218 (588)
+++..+-+.-.+.||.. +||.. +...-+..|.-+++.|++|+|||...+--+...+ . .
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~----------~ 91 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-K----------S 91 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-h----------c
Confidence 44455544445556643 35522 2333344667788899999999966554444333 2 3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 219 GPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
|..++|+.- -+-..|+.+.+..+
T Consensus 92 Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 92 GRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCeEEEEEE-eCCHHHHHHHHHHc
Confidence 556777753 34456777777665
No 385
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.83 E-value=0.38 Score=46.28 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=28.5
Q ss_pred ChHHHHHHHHcccCCCCCcceeEecCccccc-cc----CcHHHHHHHHHhhh-hcceeEEEeccc
Q 007831 282 TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV-DL----GFEDDIREVFDHFK-AQRQTLLFSATM 340 (588)
Q Consensus 282 Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~-~~----~~~~~i~~i~~~~~-~~~q~l~~SAT~ 340 (588)
+...+...+.+.... -+|||||+|.+. .. .+...+..++.... .....+.++++.
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344455555543322 589999999999 21 23344444444422 223345566665
No 386
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.83 E-value=0.62 Score=49.36 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.5
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp 200 (588)
.+|+.+|.|+|||.++.+-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999776543
No 387
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.83 E-value=1.4 Score=49.47 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+++||||+|.|....+ +.+.+.+...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998765333 33444444434444444443
No 388
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.81 E-value=1.3 Score=45.13 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=26.1
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchH
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
....+++|+||||.|... -...+...+..-+.... +++++.-+..
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~-~il~~n~~~~ 151 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTR-FILITNDPSK 151 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeE-EEEEcCChhh
Confidence 367889999999998752 22344444444444444 4444443333
No 389
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.74 E-value=0.57 Score=49.00 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=14.5
Q ss_pred CEEEEecCCchHhHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~l 199 (588)
.+++.||.|+|||.++..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 358999999999976544
No 390
>PRK08840 replicative DNA helicase; Provisional
Probab=89.73 E-value=5.8 Score=42.86 Aligned_cols=52 Identities=21% Similarity=0.008 Sum_probs=28.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
.|.=+++.|.+|.|||...+--+...+.. .+..++|... -.-..|+..++-.
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~----------~~~~v~~fSl-EMs~~ql~~Rlla 267 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMD----------QDKPVLIFSL-EMPAEQLMMRMLA 267 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHh----------CCCeEEEEec-cCCHHHHHHHHHH
Confidence 44556777999999996553333333222 2444555543 3444555544443
No 391
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.69 E-value=0.55 Score=54.74 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=78.4
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
+...++|+|+.--...+.+...+...++.....-++.+ -...+..|++ --.+|+-+...+.|+|+-++.||+..++
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d---~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETED---FDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcc---hhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecc
Confidence 34568999999888888888888777777655554433 3456777776 3335677888899999999999999999
Q ss_pred CCChhHHHHHhcccccCCCccEE
Q 007831 472 PAEIENYVHRIGRTGRCGKTGIA 494 (588)
Q Consensus 472 p~s~~~y~qriGRagR~g~~g~~ 494 (588)
-.++..-.|.+||+.|.|++...
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT 1317 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPT 1317 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccch
Confidence 99999999999999999987543
No 392
>PRK07004 replicative DNA helicase; Provisional
Probab=89.49 E-value=2.9 Score=45.18 Aligned_cols=115 Identities=11% Similarity=0.045 Sum_probs=54.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|.+|+|||...+--+...+.. .+..++|++ .-.-..|+..++-.... ++...-
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~----------~~~~v~~fS-lEM~~~ql~~R~la~~~--------~v~~~~ 272 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE----------YGLPVAVFS-MEMPGTQLAMRMLGSVG--------RLDQHR 272 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH----------cCCeEEEEe-CCCCHHHHHHHHHHhhc--------CCCHHH
Confidence 45567778999999995544333333322 244455553 33344454444432211 111111
Q ss_pred E-EcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCcccccc
Q 007831 259 C-IGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 259 ~-~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~ 313 (588)
+ .|..+..+. ...+. ...+.|. |+..+.....+-......+++||||=.+.|..
T Consensus 273 i~~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 273 MRTGRLTDEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HhcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 1 122222111 12222 3456653 44444443322111123578999999998864
No 393
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.34 E-value=1.4 Score=45.15 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHHH
Q 007831 166 PTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 166 p~~~Q~~~i~~il----~g~---dvii~a~TGsGKTl~~~l 199 (588)
.+|||...|..+. +|+ -.++.||.|.||+..+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 4788888887766 343 567899999999966543
No 394
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.30 E-value=2.2 Score=46.02 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHh------cC----CCEEEEecCCchHhHHHHHHHH-HHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007831 164 VQPTPIQVQGLPVVL------SG----RDMIGIAFTGSGKTLVFVLPMI-MIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il------~g----~dvii~a~TGsGKTl~~~lp~l-~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
..+-|+|.-++-.++ .| +-.++..|-+-|||......++ ..+... ..+....|++|+.+-+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--------~~~~~~~i~A~s~~qa 131 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--------RSGAGIYILAPSVEQA 131 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--------hcCCcEEEEeccHHHH
Confidence 356899999999888 22 3568889999999944332222 222221 3577899999999999
Q ss_pred HHHHHHHHHHhhc
Q 007831 233 RQTYEVVEQFLTP 245 (588)
Q Consensus 233 ~Q~~~~~~~~~~~ 245 (588)
.+.+..++..+..
T Consensus 132 ~~~F~~ar~mv~~ 144 (546)
T COG4626 132 ANSFNPARDMVKR 144 (546)
T ss_pred HHhhHHHHHHHHh
Confidence 9998888877653
No 395
>PRK08760 replicative DNA helicase; Provisional
Probab=89.28 E-value=3.2 Score=45.05 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=54.3
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|.=+++.|.+|+|||...+--+...+.. .+..++|.+ .-.-..|+..++......+. ...+ .
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~----------~g~~V~~fS-lEMs~~ql~~Rl~a~~s~i~---~~~i----~ 290 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK----------SKKGVAVFS-MEMSASQLAMRLISSNGRIN---AQRL----R 290 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh----------cCCceEEEe-ccCCHHHHHHHHHHhhCCCc---HHHH----h
Confidence 4456677999999995544433333222 244455554 33444566655554432110 0011 1
Q ss_pred EcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCccccc
Q 007831 260 IGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 260 ~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~ 312 (588)
.|..+..+. ...+. ...+.|. |++.+...+.+-.. -..+++||||=.+.|.
T Consensus 291 ~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 291 TGALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred cCCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 122221111 12222 2345544 44555444332111 2357899999998885
No 396
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.22 E-value=0.23 Score=45.98 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=29.4
Q ss_pred HhcCCcEEEeChHHHHHHHHcccCC--CCCcceeEecCccccccc
Q 007831 272 VKRGVHIVVATPGRLKDMLAKKKMN--LDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 272 l~~~~~IvV~Tp~~L~~~l~~~~~~--l~~~~~lViDEah~l~~~ 314 (588)
....++|||+++..|.+-.....+. ...-.+|||||||.+.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3446899999999887665543332 223468999999998764
No 397
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.15 E-value=1.2 Score=45.43 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=15.6
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~l 199 (588)
..+|+++|.|+|||..+-+
T Consensus 163 pSmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARL 181 (554)
T ss_pred CceEEecCCCCchHHHHHH
Confidence 4899999999999966533
No 398
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.00 E-value=3.4 Score=42.04 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=23.6
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
..++|++||+|.+.... ...+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46789999999986532 234555555555555555543
No 399
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.95 E-value=1.2 Score=49.19 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=15.7
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp 200 (588)
+.+++.||.|+|||..+..-
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45889999999999765443
No 400
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.90 E-value=4 Score=43.78 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=54.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|++|+|||...+--+...+.. .|..+++++ .-.-..|+..++...... +....
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~----------~g~~vl~~S-lEm~~~~i~~R~~~~~~~--------v~~~~ 254 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK----------EGKPVAFFS-LEMSAEQLAMRMLSSESR--------VDSQK 254 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh----------CCCeEEEEe-CcCCHHHHHHHHHHHhcC--------CCHHH
Confidence 45567788999999995544333333322 244566664 334445555545443221 11111
Q ss_pred E-EcCcchHHH------HHHHhcCCcEEE-e----ChHHHHHHHHcccCCCCCcceeEecCcccccc
Q 007831 259 C-IGGVDMRSQ------LEVVKRGVHIVV-A----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 259 ~-~gg~~~~~~------~~~l~~~~~IvV-~----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~ 313 (588)
+ .|.....+. ...+.+ ..+.| . |+..+...+.+-... ..+++||||=.+.|..
T Consensus 255 ~~~g~l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 255 LRTGKLSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSG 319 (434)
T ss_pred hccCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 1 122222111 122222 34444 2 444554444321111 3478999999988753
No 401
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.88 E-value=0.85 Score=45.35 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHH
Q 007831 167 TPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 167 ~~~Q~~~i~~il~--g~dvii~a~TGsGKTl~~~lp~l~~ 204 (588)
.+.|.+.|..++. +..++++++||||||.. +..++..
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~ 103 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSE 103 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhh
Confidence 4456666655553 34588999999999954 3334443
No 402
>PF12846 AAA_10: AAA-like domain
Probab=88.86 E-value=0.68 Score=46.57 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=30.1
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
++++++|+||||||.... .++..+.. .|..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~----------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR----------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH----------cCCCEEEEcCCchHHH
Confidence 689999999999996655 44444433 4677888877765544
No 403
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.84 E-value=5.1 Score=37.00 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCCcceeEecCcccccccCcH--HHHHHHHHhhhhcceeEEEecccchHHHHHH
Q 007831 297 LDNCRYLTLDEADRLVDLGFE--DDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~--~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~ 348 (588)
-..+++||+||+-...+.|+. +.+..+++.-+...-+|+.--.+|+.+.+.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 457899999999999888853 4666666666666667777777787766554
No 404
>PRK08006 replicative DNA helicase; Provisional
Probab=88.76 E-value=8.1 Score=41.85 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=54.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|.+|.|||...+--+...+.. .+..++|.. .-.-..|+..++-.....+ ....++
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~----------~g~~V~~fS-lEM~~~ql~~Rlla~~~~v---~~~~i~--- 285 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML----------QDKPVLIFS-LEMPGEQIMMRMLASLSRV---DQTRIR--- 285 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh----------cCCeEEEEe-ccCCHHHHHHHHHHHhcCC---CHHHhh---
Confidence 34456667999999995544333333322 244455554 3344445554444332211 011111
Q ss_pred EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCccccc
Q 007831 259 CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~ 312 (588)
.|..+..+. ...+.....+.|- |+..+.....+-......+++||||=.|.|.
T Consensus 286 -~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 286 -TGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred -cCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 222222221 1122123445553 4444444332211112358899999999885
No 405
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=88.66 E-value=1.1 Score=49.96 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=23.9
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
+...+++||||+|.|....+ +.+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 45678999999999975432 33333444444444444443
No 406
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.52 E-value=0.9 Score=50.38 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+++||||+|+|....+ +.+.+.+..-+....+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 4678999999999976443 33333344333444444443
No 407
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.48 E-value=1.2 Score=49.48 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
....+++||||+|.|....+ +.+.+.+...+.... ++|.+|-+..+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~-fIl~t~~~~kl 162 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVK-FIFATTEPHKV 162 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeE-EEEEeCChhhh
Confidence 35678999999999875433 344444444333333 33444544433
No 408
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.32 E-value=0.92 Score=46.24 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCcHHHHHHH-HHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 165 QPTPIQVQGL-PVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 165 ~p~~~Q~~~i-~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+++.|..-+ -++..+++++++++||||||.. +.+++..+- ...+.+.+=-|.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip-----------~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP-----------PEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC-----------chhcEEEEeccccc
Confidence 4566665544 4455889999999999999943 555554431 23356666666554
No 409
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.31 E-value=2.5 Score=45.15 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=54.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007831 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
..++||.|+++.-|..+++.+... ++++..++|+.+..++...+ . ..++|+||| +.+. .+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~-rG 318 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAA-RG 318 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhh-cC
Confidence 457999999999999888777654 78899999988776654443 2 358999999 5554 46
Q ss_pred CCCCCcceeEec
Q 007831 295 MNLDNCRYLTLD 306 (588)
Q Consensus 295 ~~l~~~~~lViD 306 (588)
+++..+++||.-
T Consensus 319 iDip~v~~VI~~ 330 (423)
T PRK04837 319 LHIPAVTHVFNY 330 (423)
T ss_pred CCccccCEEEEe
Confidence 677888877643
No 410
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.29 E-value=7.8 Score=44.60 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.4
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~l 199 (588)
..++++++|+|+|||...-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35999999999999966533
No 411
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.28 E-value=1.1 Score=49.57 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=25.7
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhh--cceeEEEecccchHHH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQ 345 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~--~~q~l~~SAT~~~~i~ 345 (588)
...++|||||+|.|... ....+++.+.. ..-++++.+|-+..+.
T Consensus 118 g~~kVIIIDEad~Lt~~----a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTRE----AFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCHH----HHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 45689999999998643 33444554432 2334555566554433
No 412
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.26 E-value=2.1 Score=46.09 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHc
Q 007831 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAK 292 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~ 292 (588)
+.+.++||.|-|+--|.++...+... ++++..++|+.+-.++...|. ..+.|+||| |.. .
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~----------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVA-a 402 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK----------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVA-A 402 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc----------CcceeeecccccHHHHHHHHHhcccCCcceEEEc-----ccc-c
Confidence 45778999999999999988877775 578999999987766655443 258999999 554 4
Q ss_pred ccCCCCCcceeEe
Q 007831 293 KKMNLDNCRYLTL 305 (588)
Q Consensus 293 ~~~~l~~~~~lVi 305 (588)
+.+++.++++||-
T Consensus 403 RGLDi~dV~lVIn 415 (519)
T KOG0331|consen 403 RGLDVPDVDLVIN 415 (519)
T ss_pred ccCCCccccEEEe
Confidence 4667777777763
No 413
>PRK14701 reverse gyrase; Provisional
Probab=88.21 E-value=1.5 Score=54.25 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=54.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLK------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~ 453 (588)
.+.++||.+||+.-+..+++.|... ++.+..+||+++..++..+++.+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988763 567789999999999999999999999999999975
No 414
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=88.18 E-value=0.6 Score=52.51 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=38.6
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
++++++||||||||..+++|-+... ...+||+=|.-|+...+....++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 5899999999999999999987542 124788889988888776655554
No 415
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.17 E-value=1.3 Score=45.21 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=28.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.|+-+.+.+|+|||||...+-.+. .... .+..++|+-.-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~-~~~~----------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA-EAQK----------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH----------cCCcEEEEcccchhHH
Confidence 567788999999999966544333 3322 3567788865544433
No 416
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.08 E-value=1.4 Score=43.02 Aligned_cols=79 Identities=16% Similarity=0.326 Sum_probs=60.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCC----cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccc-cCCCcc
Q 007831 418 GVEAVAVHGGKDQEEREYAISSFKAGK----KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG-RCGKTG 492 (588)
Q Consensus 418 g~~~~~ihg~~~~~~R~~~~~~f~~g~----~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRag-R~g~~g 492 (588)
++.+..++++.+... -.|.++. ..|+|.-+.++||+.++++.+.....-+...+.+.||.=--| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 567777776654432 2334443 789999999999999999999999999998888777753344 778888
Q ss_pred EEEEEecCC
Q 007831 493 IATTFINKN 501 (588)
Q Consensus 493 ~~~~~~~~~ 501 (588)
.+-+|+++.
T Consensus 185 l~Ri~~~~~ 193 (239)
T PF10593_consen 185 LCRIYMPEE 193 (239)
T ss_pred ceEEecCHH
Confidence 999999766
No 417
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.07 E-value=2.9 Score=40.64 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHhcCC-CEEEEecCCchHhHHHH
Q 007831 176 VVLSGR-DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 176 ~il~g~-dvii~a~TGsGKTl~~~ 198 (588)
.+-.|+ -+.++++.|||||...-
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH
Confidence 344555 67788999999997765
No 418
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=6.5 Score=42.98 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007831 141 PIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|++.+--..+...|... -+++|-.++.-++. .-..+++++|.|.|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHH
Confidence 445899988777777766544 23333333333322 2457999999999999764
No 419
>PTZ00110 helicase; Provisional
Probab=87.93 E-value=3.1 Score=46.11 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hhc-CCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VKR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+.+.+... ++.+..++|+....++... ++. ...|+||| +.+ ..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~-~r 439 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVA-SR 439 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chh-hc
Confidence 4678999999999999888877643 6778899998876655433 333 47899999 555 44
Q ss_pred cCCCCCcceeEe
Q 007831 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
.+++.++++||.
T Consensus 440 GIDi~~v~~VI~ 451 (545)
T PTZ00110 440 GLDVKDVKYVIN 451 (545)
T ss_pred CCCcccCCEEEE
Confidence 677888888775
No 420
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.91 E-value=2.2 Score=43.99 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHhc--C---CCEEEEecCCchHhHHHHH
Q 007831 166 PTPIQVQGLPVVLS--G---RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 166 p~~~Q~~~i~~il~--g---~dvii~a~TGsGKTl~~~l 199 (588)
++|||...|..+.. + +-.++.+|.|.||+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 47888888888763 3 3678899999999966533
No 421
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.89 E-value=1.1 Score=49.77 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=15.6
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp 200 (588)
+-.+++||.|+|||.++-+-
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34788999999999775443
No 422
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.87 E-value=1.4 Score=46.46 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
...+++||||+|+|..... +.+.+.+..-+... +++++||-+..+
T Consensus 116 ~~~kViiIDead~m~~~aa-naLLk~LEep~~~~-~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAA-NALLKAVEEPPPRT-VWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHHH-HHHHHHhhcCCCCC-eEEEEECChHHC
Confidence 4678999999999965321 33334444333333 455555545443
No 423
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.72 E-value=0.81 Score=48.80 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHhcCC--CEEEEecCCchHhHHHHHHHHHHHHh
Q 007831 166 PTPIQVQGLPVVLSGR--DMIGIAFTGSGKTLVFVLPMIMIAMH 207 (588)
Q Consensus 166 p~~~Q~~~i~~il~g~--dvii~a~TGsGKTl~~~lp~l~~~~~ 207 (588)
+++.|.+.+..+++.. =+++.+|||||||.. +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 3688888888887543 356679999999955 5566665543
No 424
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.71 E-value=4 Score=42.61 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=49.2
Q ss_pred cCCCCCCCccccCCHHHHHHHHHhcCeEeecCCCC-CCCCCCCCC-------CCCHHHHHHHHHCCCCC---Cc------
Q 007831 105 LTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIP-PPIKNFKDM-------RFPEPILKKLKAKGIVQ---PT------ 167 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~~p-~p~~~f~~~-------~l~~~l~~~l~~~g~~~---p~------ 167 (588)
...|.+....-.++...++.|..+-+-.|.|..-| .+-..|-.+ +.+++-.. ....|.. ++
T Consensus 69 ~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~--~r~~f~~l~p~~p~~R~~ 146 (416)
T PRK09376 69 DANYLPGPDDIYVSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKAR--NRPLFENLTPLYPNERLR 146 (416)
T ss_pred CcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhc--CCCCcccCCCCChhhccc
Confidence 34566666666788888888877777666665422 222221111 12222211 1112222 22
Q ss_pred -------HHHHHHHHHHh---cCCCEEEEecCCchHhHH
Q 007831 168 -------PIQVQGLPVVL---SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 168 -------~~Q~~~i~~il---~g~dvii~a~TGsGKTl~ 196 (588)
++=..+|..+. .|+..+++||.|+|||..
T Consensus 147 le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 147 LETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 23333343333 688999999999999954
No 425
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.70 E-value=2.8 Score=46.05 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+++||||+|+|....+ +.+.+.+...+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 4568999999999876433 33444444434444444433
No 426
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.68 E-value=5.1 Score=47.34 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=34.3
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccch
Q 007831 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
.--+||||++|.+.+......+..++...+....+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999986655556788888888888888888877543
No 427
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.62 E-value=1.5 Score=40.97 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=14.1
Q ss_pred CCCcceeEecCcccccc
Q 007831 297 LDNCRYLTLDEADRLVD 313 (588)
Q Consensus 297 l~~~~~lViDEah~l~~ 313 (588)
....+++||||+|.|..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 35678999999999865
No 428
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=87.58 E-value=2.7 Score=45.02 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~ 293 (588)
...++||.|++++-|..+++.+... ++.+..++|+.+..++...+. ...+|+||| +.+ ..
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~----------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~-~~ 307 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA----------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVA-AR 307 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-cc
Confidence 4568999999999999988887764 788999999887766654432 358999999 554 34
Q ss_pred cCCCCCcceeEe
Q 007831 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
++++..+++||.
T Consensus 308 GiDip~v~~VI~ 319 (434)
T PRK11192 308 GIDIDDVSHVIN 319 (434)
T ss_pred CccCCCCCEEEE
Confidence 667888888773
No 429
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.31 E-value=2.1 Score=47.74 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
..++++||||+|+|....| +.+.+.+...+....+| |.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fI-L~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFV-LATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEE-EEECCchh
Confidence 4678999999999876443 22333333333333343 44454433
No 430
>PF05729 NACHT: NACHT domain
Probab=87.30 E-value=4 Score=36.65 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007831 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
=+++.|+.|+|||...
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3688999999999654
No 431
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.26 E-value=3.7 Score=41.89 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHH
Q 007831 165 QPTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~---dvii~a~TGsGKTl~~~ 198 (588)
.++|||...+..+. +++ -.++.+|.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 57888888887766 343 68899999999995543
No 432
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=87.12 E-value=3.5 Score=44.56 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~L~~~l~~~ 293 (588)
...++||.|+++.-|..+++.+.+. ++.+..++|+.+..+....+ .. ..+|+||| +.+. .
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-r 307 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKD----------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-R 307 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-c
Confidence 3467899999999999888877654 67889999998776554433 33 57899999 6554 4
Q ss_pred cCCCCCcceeE
Q 007831 294 KMNLDNCRYLT 304 (588)
Q Consensus 294 ~~~l~~~~~lV 304 (588)
.+++..+++||
T Consensus 308 GiDip~v~~VI 318 (456)
T PRK10590 308 GLDIEELPHVV 318 (456)
T ss_pred CCCcccCCEEE
Confidence 66777777776
No 433
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.10 E-value=6.9 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+..+++.+|+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3457999999999999554
No 434
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.05 E-value=2 Score=42.42 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~l 199 (588)
.++++.+|.|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4899999999999966543
No 435
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.04 E-value=0.71 Score=50.42 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+++||||||.|....+ +.+...+...+....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~-NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAF-NALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHHhhcCCceEEEEEE
Confidence 35678999999999975433 34444455444555455544
No 436
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.95 E-value=2.5 Score=42.87 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.5
Q ss_pred CCEEEEecCCchHhHHH
Q 007831 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.++++.+|.|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999554
No 437
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=86.85 E-value=0.84 Score=43.04 Aligned_cols=54 Identities=15% Similarity=0.326 Sum_probs=24.5
Q ss_pred CcceeEecCcccccccCcH--HHHHHHHHhh---hhcceeEEEecccchHHHHHHHHhc
Q 007831 299 NCRYLTLDEADRLVDLGFE--DDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSAL 352 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~--~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l 352 (588)
.=.++||||||.+...... .....++..+ +...--++++.--+..+...++...
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 4468999999998764321 1223333433 3332334444444455555555443
No 438
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.78 E-value=0.59 Score=49.73 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007831 175 PVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 175 ~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
|.-...++++++|+||||||.+ +..++..+.. .+..++|+=|..++...
T Consensus 37 ~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~----------~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA----------RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh----------cCCCEEEEeCCcchhHh
Confidence 3334567999999999999965 4444444433 35568888898887543
No 439
>PRK09354 recA recombinase A; Provisional
Probab=86.76 E-value=2.3 Score=43.88 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=30.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.|+-+.+.+|+|||||...+..+.... . .+..++||-.-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~----------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K----------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H----------cCCcEEEECCccchHH
Confidence 467788999999999977655444332 2 4667888887665543
No 440
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=86.75 E-value=0.87 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=17.2
Q ss_pred CCEEEEecCCchHhHHHHHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~ 204 (588)
-+++++|++|||||. +++-++..
T Consensus 14 fr~viIG~sGSGKT~-li~~lL~~ 36 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTT-LIKSLLYY 36 (241)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHh
Confidence 378999999999994 45555543
No 441
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.72 E-value=8.8 Score=41.28 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--------cC----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007831 148 MRFPEPILKKLKAKGIVQPTPIQVQGLPVVL--------SG----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 148 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--------~g----~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
++.+.+-++.+...|+-...+.=.+.+..-. +. ..+++.+|.|||||..+.-.++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 4678888888888887666665555554321 11 47899999999999544332221
Q ss_pred CCCCCEEEEEcCC
Q 007831 216 PGEGPFCLIVCPS 228 (588)
Q Consensus 216 ~~~~~~~Lil~Pt 228 (588)
..-|++=|+.|-
T Consensus 562 -S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 -SDFPFVKIISPE 573 (744)
T ss_pred -cCCCeEEEeChH
Confidence 356777788775
No 442
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.69 E-value=0.69 Score=46.13 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=27.8
Q ss_pred hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 178 LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
..+.+++++|+||||||.. +-.++..+-. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~----------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPP----------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHT----------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhccc----------cccceEEeccccce
Confidence 3578999999999999954 3444433211 23567777777665
No 443
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.67 E-value=4.8 Score=41.31 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHh--cCC---CEEEEecCCchHhHHHHHH
Q 007831 166 PTPIQVQGLPVVL--SGR---DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 166 p~~~Q~~~i~~il--~g~---dvii~a~TGsGKTl~~~lp 200 (588)
.+|||...|..+. .++ .+++.+|.|.|||..+..-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 4789999998887 333 5889999999999665443
No 444
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.66 E-value=3.4 Score=39.76 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.+++|+|||...+--+...+ . .+..++|+.-. +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~-~----------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL-K----------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h----------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 356788899999999965433333322 2 35567777654 4567777777665
No 445
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.65 E-value=6.2 Score=46.23 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~ 198 (588)
..+++++||+|+|||.+.-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3689999999999996654
No 446
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.64 E-value=3.2 Score=39.06 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----c-ccCCCCCC
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----A-SKGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~-~~GlDip~ 462 (588)
.++++||.++++.-+...+..+... ++.+..++|+.+..+..... .+..+|+|+|.- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3567999999999888877766544 77888999999876654333 267889999952 2 22256677
Q ss_pred cceEE
Q 007831 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
++++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 77766
No 447
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.57 E-value=3.5 Score=46.06 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.5
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp 200 (588)
.+|+.||.|.|||.++.+-
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999776543
No 448
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.54 E-value=8.9 Score=43.34 Aligned_cols=78 Identities=12% Similarity=0.326 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+|+..|..+.+.+.+. ++.+..++|+.+..++... +. ...+|+||| +.+ ..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L-~r 504 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLL-RE 504 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chh-cC
Confidence 5778999999999999988888776 7888888888665444333 32 357899999 544 45
Q ss_pred cCCCCCcceeEecCcccc
Q 007831 294 KMNLDNCRYLTLDEADRL 311 (588)
Q Consensus 294 ~~~l~~~~~lViDEah~l 311 (588)
++.+..+++||+-+++..
T Consensus 505 GfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKE 522 (655)
T ss_pred CeeeCCCcEEEEeCcccc
Confidence 777889999998888774
No 449
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.52 E-value=14 Score=38.59 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=28.0
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhh-hhcceeEEEecccchHH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHF-KAQRQTLLFSATMPTKI 344 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i 344 (588)
....+|+|||.|.- |-+-.-.+..+++.+ ....-+|..|-+.|..+
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 45568999999963 322223344555544 34456777788877653
No 450
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=86.34 E-value=3.4 Score=44.74 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=54.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007831 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
...+||.|+|+.-|..+++.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..+
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~----------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~-~rG 305 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ----------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVA-ARG 305 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----ccc-ccc
Confidence 446899999999999998888765 67899999998776554433 2 257899999 544 346
Q ss_pred CCCCCcceeEecC
Q 007831 295 MNLDNCRYLTLDE 307 (588)
Q Consensus 295 ~~l~~~~~lViDE 307 (588)
+++.++++||.-+
T Consensus 306 iDi~~v~~VI~~d 318 (460)
T PRK11776 306 LDIKALEAVINYE 318 (460)
T ss_pred cchhcCCeEEEec
Confidence 6778888877533
No 451
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=86.32 E-value=1.8 Score=44.25 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=29.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.|+-+.+.+|+|||||...+-.+... .. .+..++||.+-..+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~-~~----------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA-QK----------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH----------cCCCEEEECccccHHH
Confidence 46678899999999996654444333 22 3667888887655543
No 452
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=86.25 E-value=2.4 Score=49.66 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-cccCCCCCCcceEE
Q 007831 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-ASKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GlDip~v~~VI 467 (588)
.+++|.|.|||.--|+.-++-|+.+ .+++..+.--.+..+...+++..++|+++|+|.|-. ++.++-+.++.+||
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4579999999988888777777664 667788888899999999999999999999999965 57899999999988
No 453
>PRK10436 hypothetical protein; Provisional
Probab=86.15 E-value=1.5 Score=47.19 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007831 167 TPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 167 ~~~Q~~~i~~il--~g~dvii~a~TGsGKTl~~~lp~l~~~ 205 (588)
.+.|.+.|..++ .+.-+++++|||||||... ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 455555565554 3446888999999999653 4445443
No 454
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=85.99 E-value=4.6 Score=41.63 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHHH
Q 007831 165 QPTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 165 ~p~~~Q~~~i~~il----~g~---dvii~a~TGsGKTl~~~l 199 (588)
.++|||...|..+. +|+ -.++.||.|+||+..+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 46789998888776 343 577999999999966543
No 455
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=85.87 E-value=9.6 Score=35.37 Aligned_cols=53 Identities=11% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCcceeEecCcccccccCcH--HHHHHHHHhhhhcceeEEEecccchHHHHHHHH
Q 007831 298 DNCRYLTLDEADRLVDLGFE--DDIREVFDHFKAQRQTLLFSATMPTKIQNFARS 350 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~--~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~ 350 (588)
..+++||+||.-..+..|+. +.+..++..-|....+|+..-..|+.+.+.+..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 36889999999999887753 455555555455555566555678877766543
No 456
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.85 E-value=1.5 Score=48.29 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+++||||+|.|....+ +.+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 34678999999999876433 33334444434444455544
No 457
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=85.84 E-value=1.9 Score=51.97 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=52.0
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc----CCcE---EEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007831 392 KTPPPVLIFCENKADVDDIHEYLLLK----GVEA---VAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~----g~~~---~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~ 453 (588)
..+.+++|.+||+.-+..+++.+... |+.+ ..+||+++..++...++.+.+|..+|||+|..
T Consensus 119 ~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 119 KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 34678999999999999998887654 4433 35899999999999999999999999999974
No 458
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.79 E-value=2.4 Score=49.52 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHHHHHHh----c--CCCEEEEecCCchHhHHH
Q 007831 170 QVQGLPVVL----S--GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 170 Q~~~i~~il----~--g~dvii~a~TGsGKTl~~ 197 (588)
|...|..+. . ..++++++|.|+|||.+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555554443 2 358999999999999664
No 459
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.69 E-value=4.7 Score=47.17 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.4
Q ss_pred CCEEEEecCCchHhHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~ 198 (588)
.++++++|+|+|||.+.-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999996653
No 460
>PRK05636 replicative DNA helicase; Provisional
Probab=85.68 E-value=6.7 Score=42.82 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=13.0
Q ss_pred CCcceeEecCcccccc
Q 007831 298 DNCRYLTLDEADRLVD 313 (588)
Q Consensus 298 ~~~~~lViDEah~l~~ 313 (588)
..+++||||=.|.|..
T Consensus 374 ~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 374 HDLKLIVVDYLQLMSS 389 (505)
T ss_pred cCCCEEEEcchHhcCC
Confidence 3578999999998863
No 461
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.68 E-value=1.2 Score=42.08 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=15.0
Q ss_pred EEEEecCCchHhHHHHHHHHHH
Q 007831 183 MIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 183 vii~a~TGsGKTl~~~lp~l~~ 204 (588)
+++++|||||||... ..++..
T Consensus 4 ilI~GptGSGKTTll-~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 678899999999653 334443
No 462
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=85.65 E-value=1.5 Score=44.42 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHh
Q 007831 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMH 207 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~ 207 (588)
+.--|+.|..=+.++....=+++++|-|+|||..+...+...+..
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh
Confidence 444588999999999988889999999999998877777766544
No 463
>PRK05595 replicative DNA helicase; Provisional
Probab=85.61 E-value=3.3 Score=44.60 Aligned_cols=51 Identities=20% Similarity=0.023 Sum_probs=27.8
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|.=+++.|.||+|||...+--+...... .|..++|+.. ..-..|+..++-.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~----------~g~~vl~fSl-Ems~~~l~~R~~a 251 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR----------EGKSVAIFSL-EMSKEQLAYKLLC 251 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH----------cCCcEEEEec-CCCHHHHHHHHHH
Confidence 4445667999999995544333322222 3555666643 3344455544433
No 464
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.59 E-value=2 Score=44.36 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=39.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 155 LKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||||||... -.++..+ . ...+.+++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i-~----------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV-A----------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC-C----------CCCcEEEECCccee
Confidence 455656664 4566777776655 5679999999999999542 2222221 1 23356777777676
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=85.41 E-value=1.1 Score=46.77 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=21.7
Q ss_pred cCCCCCCCccccCCHHHHHHHHHhcCeEeecC
Q 007831 105 LTGWKPPLPIRRMSKKACDLIRKQWHIIVDGE 136 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~ 136 (588)
...|.+....-.++...++.|..+-+-.|.|.
T Consensus 69 ~~~~~~~~~d~yvs~~~i~~~~lr~gd~v~g~ 100 (415)
T TIGR00767 69 DSSYLPGPDDIYVSPSQIRRFNLRTGDTIEGQ 100 (415)
T ss_pred CcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 34566655666778888887777766666664
No 466
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=85.28 E-value=4.9 Score=44.14 Aligned_cols=69 Identities=10% Similarity=0.224 Sum_probs=53.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcccC
Q 007831 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~ 295 (588)
..+||.|.|+..|..+...+... ++++..++|+.+-......+. ...+|+||| |.. ..++
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~----------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----Dva-aRGi 337 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKR----------GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVA-ARGL 337 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHC----------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chh-hccC
Confidence 36999999999999988777776 789999999988766655443 368999999 665 3466
Q ss_pred CCCCcceeE
Q 007831 296 NLDNCRYLT 304 (588)
Q Consensus 296 ~l~~~~~lV 304 (588)
++.++.+||
T Consensus 338 Di~~v~~Vi 346 (513)
T COG0513 338 DIPDVSHVI 346 (513)
T ss_pred CccccceeE
Confidence 677777664
No 467
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=85.24 E-value=1 Score=50.48 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=38.6
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
..+++++||||||||..+++|-+.. -+.-++|+=|..|+...+....++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~-------------~~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK-------------WGGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc-------------CCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 3689999999999999999997642 1234678889999988777655554
No 468
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.04 E-value=7.5 Score=41.92 Aligned_cols=58 Identities=19% Similarity=0.079 Sum_probs=35.9
Q ss_pred HHHHHh-----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 173 GLPVVL-----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 173 ~i~~il-----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+..++ .|.-+++.+++|+|||...+-.+. .+.. .+.+++|+..- +-..|+...+.++
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~-~~a~----------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC-QLAK----------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH-HHHh----------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 455555 356778889999999966544332 2222 34468888754 5556766655554
No 469
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=85.01 E-value=1.1 Score=47.19 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=31.6
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007831 177 VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
-...++++++|.||||||. ++-.++..+.. .+-+++|.=|.-+....
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~----------~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRA----------RGDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH----------TT-EEEEEEETTHHHHH
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHH----------cCCEEEEEECCchHHHH
Confidence 3456899999999999996 45666666655 35567777787666443
No 470
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.99 E-value=1.6 Score=48.78 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.1
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp 200 (588)
.+|+.||.|+|||.+..+-
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999765443
No 471
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.88 E-value=1.4 Score=43.84 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCEEEEecCCchHhHHHH
Q 007831 172 QGLPVVLSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 172 ~~i~~il~g~dvii~a~TGsGKTl~~~ 198 (588)
+++..+..|+++++.+|+|+|||.++.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 334445588999999999999997653
No 472
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.68 E-value=0.87 Score=51.15 Aligned_cols=46 Identities=26% Similarity=0.192 Sum_probs=36.9
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.+++++||||||||..+++|.+... +..+||+=|--|+..-+....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------------CCCEEEEeCcHHHHHHHHHHH
Confidence 6899999999999999999987531 335899999999977665543
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.64 E-value=7.7 Score=45.30 Aligned_cols=21 Identities=29% Similarity=0.132 Sum_probs=16.9
Q ss_pred CCCEEEEecCCchHhHHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp 200 (588)
..++++++|+|.|||.+.-..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHH
Confidence 359999999999999765443
No 474
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.56 E-value=1.5 Score=47.65 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHhcC-C-CEEEEecCCchHhHH
Q 007831 167 TPIQVQGLPVVLSG-R-DMIGIAFTGSGKTLV 196 (588)
Q Consensus 167 ~~~Q~~~i~~il~g-~-dvii~a~TGsGKTl~ 196 (588)
.+-|.+.+..++.. + -+++++|||||||..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 56677777666643 3 367889999999955
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.54 E-value=6.5 Score=42.83 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=41.9
Q ss_pred HHHHHHHh-----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 171 VQGLPVVL-----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 171 ~~~i~~il-----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...+..++ .|.-+++.+|+|+|||...+--+...+ . +|-+++|++ .-|-..|+.+.++.+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~-~----------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC-A----------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH-H----------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34566666 446788999999999976544443332 2 456788877 667788888888776
No 476
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.48 E-value=2 Score=48.51 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=15.0
Q ss_pred CEEEEecCCchHhHHHHHH
Q 007831 182 DMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp 200 (588)
-.++.||.|+|||.++.+-
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 3589999999999776443
No 477
>PRK06620 hypothetical protein; Validated
Probab=84.06 E-value=5.9 Score=37.97 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=58.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCC-CCceEEEEEcC--cchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007831 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGY-PDLRTLLCIGG--VDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~-~~i~~~~~~gg--~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
--+|+.++.+.|......+.+. ++. |..+..+++|. .....-...+.......+.+...... ..+
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~~ 83 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EIL 83 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hHH
Confidence 3489999888887776666541 111 11256788884 34444444444444444544322211 113
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhc-ceeEEEecccchH
Q 007831 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~-~q~l~~SAT~~~~ 343 (588)
...+++++||+|.+.+ ..+-.+++.+... .++++.|.|.|+.
T Consensus 84 ~~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 84 EKYNAFIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred hcCCEEEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 4567899999996522 3455555555444 4455545555553
No 478
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=83.67 E-value=2.1 Score=42.40 Aligned_cols=53 Identities=25% Similarity=0.236 Sum_probs=35.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.|+.+++.+++|||||+..+--+...+ . .|-++++|+ +.+...++.+.+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~-~----------~ge~vlyvs-~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA-R----------EGEPVLYVS-TEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH-h----------cCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 568899999999999955433333222 2 355566666 5577777777777753
No 479
>PRK09165 replicative DNA helicase; Provisional
Probab=83.64 E-value=10 Score=41.35 Aligned_cols=123 Identities=12% Similarity=0.017 Sum_probs=57.3
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhccc-CC---CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCce
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMM-MP---IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLR 255 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~-~~---~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~ 255 (588)
|.=+++.|+||+|||...+--+.+........ .+ .....|..++|+ ..-.-..|+..++-.....+ .
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v--------~ 287 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEI--------S 287 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCC--------C
Confidence 44567789999999965544443333221000 00 000124556666 44455566666554442211 1
Q ss_pred EEE-EEcCcchHHHHHHHh------cCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCcccccc
Q 007831 256 TLL-CIGGVDMRSQLEVVK------RGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 256 ~~~-~~gg~~~~~~~~~l~------~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~ 313 (588)
..- ..|..+. +.+..+. ....+.|- |+..+...+.+-.. -..+++||||=.+.|..
T Consensus 288 ~~~i~~~~l~~-~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 288 SSKIRRGKISE-EDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred HHHHhcCCCCH-HHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 111 1222221 1222111 12345543 34455444432111 23578999999998764
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=83.58 E-value=1.5 Score=32.85 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=17.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~ 205 (588)
.|...++.+++|||||.+ +-++..+
T Consensus 22 ~g~~tli~G~nGsGKSTl--lDAi~~~ 46 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL--LDAIQTV 46 (62)
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHHH
Confidence 345789999999999954 3444433
No 481
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.57 E-value=1.4 Score=45.90 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=17.1
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007831 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~l 199 (588)
...|+|+.+|||||||+.+.-
T Consensus 225 eKSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred ecccEEEECCCCCchhHHHHH
Confidence 456899999999999966543
No 482
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.32 E-value=2 Score=48.19 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=15.8
Q ss_pred CCEEEEecCCchHhHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp 200 (588)
..+|+.||.|+|||.++..-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 46799999999999765443
No 483
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=83.26 E-value=0.99 Score=24.68 Aligned_cols=17 Identities=59% Similarity=1.230 Sum_probs=15.6
Q ss_pred CCccCCCCCcccccCcc
Q 007831 546 GCAYCGGLGHRIRDCPK 562 (588)
Q Consensus 546 ~c~~cg~~g~~~~~~~~ 562 (588)
.|-.||..||...+||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 58899999999999996
No 484
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.25 E-value=3.1 Score=45.17 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=55.0
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007831 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~ 453 (588)
++.+||.+|++.-+......|...|+.+..++++.+..++..++..+..|+.+|+++|+-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 457999999999999889999999999999999999999999999999999999999963
No 485
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=83.16 E-value=1.5 Score=48.91 Aligned_cols=49 Identities=31% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007831 181 RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+++++||||||||..+++|-+... +.-++|+=|.-|+...+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 6899999999999999999975421 234788999999988776654444
No 486
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=83.15 E-value=3.8 Score=46.06 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+..+||.|+|+.-|.++++.+.+. ++.+..++|+.+..++...+. ...+|+||| +.+ ..
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~----------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT-----~a~-~~ 298 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSR----------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVAT-----VAF-GM 298 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEe-----chh-hc
Confidence 4567899999999999988888765 788999999988766543332 357999999 444 45
Q ss_pred cCCCCCcceeEec
Q 007831 294 KMNLDNCRYLTLD 306 (588)
Q Consensus 294 ~~~l~~~~~lViD 306 (588)
++++.++++||.-
T Consensus 299 GIDip~V~~VI~~ 311 (607)
T PRK11057 299 GINKPNVRFVVHF 311 (607)
T ss_pred cCCCCCcCEEEEe
Confidence 7778889988843
No 487
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.12 E-value=1.1 Score=43.68 Aligned_cols=44 Identities=30% Similarity=0.400 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHH
Q 007831 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIM 203 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~ 203 (588)
.|.+|++++||+-+.+.--. ...=+|++++|||||+.. +..++.
T Consensus 106 ~IPt~eeL~LPevlk~la~~------------------kRGLviiVGaTGSGKSTt-mAaMi~ 149 (375)
T COG5008 106 KIPTFEELKLPEVLKDLALA------------------KRGLVIIVGATGSGKSTT-MAAMIG 149 (375)
T ss_pred cCCcHHhcCCcHHHHHhhcc------------------cCceEEEECCCCCCchhh-HHHHhc
Confidence 45578888888766553211 122378889999999955 334443
No 488
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=83.04 E-value=1.7 Score=48.30 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHH
Q 007831 158 LKAKGIVQPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 158 l~~~g~~~p~~~Q~~~i~~il~--g~dvii~a~TGsGKTl~~~lp~l~~~ 205 (588)
|...|+ .+-|.+.|..++. ..-+++++|||||||.. +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 444453 4667777766653 34578899999999965 34444443
No 489
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=83.03 E-value=2.6 Score=46.95 Aligned_cols=39 Identities=33% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEE
Q 007831 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLF 336 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~ 336 (588)
+++-.++|+|||..-+|..-+..+...+..+...+ ++++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r-T~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGR-TTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCC-EEEE
Confidence 45668999999999999877777777777655554 4444
No 490
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=82.99 E-value=2 Score=45.96 Aligned_cols=68 Identities=13% Similarity=0.287 Sum_probs=54.8
Q ss_pred EEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cccC----CCCCCc
Q 007831 397 VLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASKG----LDFPDI 463 (588)
Q Consensus 397 viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~G----lDip~v 463 (588)
.|||.+|++-|..+...|... ++.+..+.||++...++++++. ..+|+|||+- +..+ =++.++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 899999999999999988654 8999999999999998888876 7789999973 2211 146677
Q ss_pred ceEEe
Q 007831 464 QHVIN 468 (588)
Q Consensus 464 ~~VI~ 468 (588)
+++|.
T Consensus 342 kcLVl 346 (731)
T KOG0347|consen 342 KCLVL 346 (731)
T ss_pred eEEEE
Confidence 87663
No 491
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.78 E-value=6.8 Score=42.60 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
...++||.|+++.-|..+++.+.+. ++.+..++|+.+..++...+ . ....|+||| +.+. .
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~-~ 397 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKD----------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAG-R 397 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-c
Confidence 3458999999999998888777554 67788899988776654433 2 257899999 5553 4
Q ss_pred cCCCCCcceeEec
Q 007831 294 KMNLDNCRYLTLD 306 (588)
Q Consensus 294 ~~~l~~~~~lViD 306 (588)
++++..+++||.-
T Consensus 398 GIDi~~v~~VI~~ 410 (475)
T PRK01297 398 GIHIDGISHVINF 410 (475)
T ss_pred CCcccCCCEEEEe
Confidence 6778888888853
No 492
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=82.72 E-value=32 Score=35.40 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=37.0
Q ss_pred EEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcH---HHHHHHHHhhhh-----cceeEEEecccchHHHHHHHH
Q 007831 279 VVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE---DDIREVFDHFKA-----QRQTLLFSATMPTKIQNFARS 350 (588)
Q Consensus 279 vV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~---~~i~~i~~~~~~-----~~q~l~~SAT~~~~i~~~~~~ 350 (588)
+|+.|+.-.++...+.-.+...+++|+==+|.....+.. ..++..+..+++ ...++.+||+-...+.++...
T Consensus 175 vv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~ 254 (332)
T PRK09435 175 LLQLPGAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQA 254 (332)
T ss_pred EEecCCchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHH
Confidence 455444433332222212334457888888876543322 233333433321 146888899877666655544
Q ss_pred h
Q 007831 351 A 351 (588)
Q Consensus 351 ~ 351 (588)
.
T Consensus 255 I 255 (332)
T PRK09435 255 I 255 (332)
T ss_pred H
Confidence 3
No 493
>CHL00176 ftsH cell division protein; Validated
Probab=82.72 E-value=4.1 Score=45.76 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.3
Q ss_pred CCCEEEEecCCchHhHHH
Q 007831 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+.+++.+|+|+|||+.+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999654
No 494
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=82.58 E-value=0.97 Score=50.81 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
..+++++||||||||..+++|-|... ..-+||+=|.-|+...+....++
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~-------------~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW-------------PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC-------------CCCEEEEeCcchHHHHHHHHHHh
Confidence 36899999999999999999987642 22478888888887776665444
No 495
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=82.54 E-value=9.8 Score=40.74 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcc
Q 007831 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~L~~~l~~~ 293 (588)
..|.++|.+.++.-|..+++.+.+. +++++.++||..-.+....| +. ..+|+||| |... .
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvAg-R 579 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----------GYKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVAG-R 579 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----cccc-c
Confidence 3577899999999999988888887 79999999998766554443 33 57999999 5543 4
Q ss_pred cCCCCCcceeE
Q 007831 294 KMNLDNCRYLT 304 (588)
Q Consensus 294 ~~~l~~~~~lV 304 (588)
++...++++||
T Consensus 580 GIDIpnVSlVi 590 (673)
T KOG0333|consen 580 GIDIPNVSLVI 590 (673)
T ss_pred CCCCCccceee
Confidence 56677777765
No 496
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=82.54 E-value=4.5 Score=45.50 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=36.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH--HHHHHHHHHHHHh
Q 007831 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE--LARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~--La~Q~~~~~~~~~ 243 (588)
..++++++|+||+|||..+.+ ++...+. .|..++++=|-.. |...+...++...
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~-l~~q~i~----------~g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAEL-LITQDIR----------RGDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHH-HHHHHHH----------cCCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 357999999999999977644 4444333 2456777777754 6666666666653
No 497
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.50 E-value=7.1 Score=44.01 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007831 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
...+||.|+|+.-+.++++.+... ++.+..++|+.+...+...+ . ...+|+||| +++. ..
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~----------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~a-rG 308 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN----------GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAA-RG 308 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC----------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHh-cC
Confidence 356899999999999988877664 67888999987766554433 2 358999999 6654 45
Q ss_pred CCCCCcceeEe
Q 007831 295 MNLDNCRYLTL 305 (588)
Q Consensus 295 ~~l~~~~~lVi 305 (588)
+++..+++||.
T Consensus 309 IDip~V~~VI~ 319 (629)
T PRK11634 309 LDVERISLVVN 319 (629)
T ss_pred CCcccCCEEEE
Confidence 77888888875
No 498
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=82.49 E-value=0.72 Score=51.15 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=85.2
Q ss_pred CCCcHHHHHHHHHHh--------cCC--CEEEEec--CCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007831 164 VQPTPIQVQGLPVVL--------SGR--DMIGIAF--TGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il--------~g~--dvii~a~--TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
..+...|.+++-.+. +|. ..++-.. .|-|.|.+- .|+...+. ...++|++.-+..|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg--iIfeNyLk----------GRKrAlW~SVSsDL 330 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG--IIFENYLK----------GRKRALWFSVSSDL 330 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE--EEehhhhc----------ccceeEEEEecccc
Confidence 366777888876544 332 3344444 444556443 23333333 45689999999888
Q ss_pred HHHHHHHHHHHhhcccccCCCCceEEEEE----cCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCC-------CCC
Q 007831 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCI----GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMN-------LDN 299 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~~~~~~----gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~-------l~~ 299 (588)
-....+.+.... -++|.+..+. +..+.++. ...+ -.|++||+-.|+---.. .... ++.
T Consensus 331 KfDAERDL~Dig-------A~~I~V~alnK~KYakIss~en-~n~k--rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW 400 (1300)
T KOG1513|consen 331 KFDAERDLRDIG-------ATGIAVHALNKFKYAKISSKEN-TNTK--RGVIFATYTALIGESQGKGGKYRTRFRQLLQW 400 (1300)
T ss_pred ccchhhchhhcC-------CCCccceehhhccccccccccc-CCcc--ceeEEEeeHhhhhhccccCchHHHHHHHHHHH
Confidence 777777776653 2355544332 11111110 1112 25999999776433221 1100 111
Q ss_pred -----cceeEecCcccccccC---------cHHHHHHHHHhhhhcceeEEEeccc
Q 007831 300 -----CRYLTLDEADRLVDLG---------FEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 300 -----~~~lViDEah~l~~~~---------~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
=.+|||||||+-.+.. .+..+-.+-+.+|. .+++.-|||=
T Consensus 401 ~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASATG 454 (1300)
T KOG1513|consen 401 CGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASATG 454 (1300)
T ss_pred hhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCC-ceEEEeeccC
Confidence 1479999999976521 23455566666654 4589999984
No 499
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=82.41 E-value=7.4 Score=34.85 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=13.4
Q ss_pred EEEEecCCchHhHHHHHH
Q 007831 183 MIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 183 vii~a~TGsGKTl~~~lp 200 (588)
+.++++.|+|||......
T Consensus 2 i~~~G~~GsGKTt~~~~l 19 (148)
T cd03114 2 IGITGVPGAGKSTLIDAL 19 (148)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 567899999999654433
No 500
>PRK06321 replicative DNA helicase; Provisional
Probab=82.40 E-value=20 Score=38.88 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=53.3
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007831 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|.=+++.|.+|.|||...+- +...+... .+..++|.+ .-.-..|+..++-.... ++...-+
T Consensus 226 G~LiiiaarPgmGKTafal~-ia~~~a~~---------~g~~v~~fS-LEMs~~ql~~Rlla~~s--------~v~~~~i 286 (472)
T PRK06321 226 SNLMILAARPAMGKTALALN-IAENFCFQ---------NRLPVGIFS-LEMTVDQLIHRIICSRS--------EVESKKI 286 (472)
T ss_pred CcEEEEEeCCCCChHHHHHH-HHHHHHHh---------cCCeEEEEe-ccCCHHHHHHHHHHhhc--------CCCHHHh
Confidence 34456679999999955443 44333211 234455553 33344455544433221 1111111
Q ss_pred -EcCcchHHHH-------HHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCcccccc
Q 007831 260 -IGGVDMRSQL-------EVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 260 -~gg~~~~~~~-------~~l~~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~ 313 (588)
.|..+. ..+ ..+.+ ..+.|- |...+...+.+-.. -..+++||||=.+.|..
T Consensus 287 ~~~~l~~-~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 287 SVGDLSG-RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSG 350 (472)
T ss_pred hcCCCCH-HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCC
Confidence 222222 222 22223 356554 44445444332111 23578999999998863
Done!