BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007832
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 385 NPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGET 444
N +++SI + R L E +KVL+LD DV+V+ L+ LW DL GA C +
Sbjct: 75 NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDL 131
Query: 445 FHRFDRYLNFSNPLISKNFDPRACGWAY---GMNIFDLDEWRRQNITDVYHTWQKMNHDR 501
F +R + + A G Y G+ + +L +WRR +I + W + D
Sbjct: 132 F--VERQEGYKQKI------GMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183
Query: 502 QLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQ----------RD----IERAA 547
++ + GL Y RF + + Y N+ RD + A
Sbjct: 184 MQYQDEDILNGLFKG-GVCYANSRF-NFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVA 241
Query: 548 VIHYNGNMKPW 558
V HY G KPW
Sbjct: 242 VSHYCGPAKPW 252
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 385 NPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGA-VETCGE 443
N +++SI + R L E +KVL+LD DV+V+ L+ LW DL GA ++ E
Sbjct: 75 NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE 134
Query: 444 TFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQL 503
+ + + ++ N G+ + +L +WRR +I W + D
Sbjct: 135 RQEGYKQKIGXADGEYYFN---------AGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQ 185
Query: 504 WKLGTLPPGL-----------ITFWKRTYPLDRFWHVLGLGYNPSVNQR--DIERAAVIH 550
++ + GL F Y W +P R + AV H
Sbjct: 186 YQDQDILNGLFKGGVCYANSRFNFXPTNYAFXANWFA-SRHTDPLYRDRTNTVXPVAVSH 244
Query: 551 YNGNMKPW 558
Y G KPW
Sbjct: 245 YCGPAKPW 252
>pdb|3CVO|A Chain A, Crystal Structure Of A Methyltransferase-Like Protein
(Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
Resolution
pdb|3CVO|B Chain B, Crystal Structure Of A Methyltransferase-Like Protein
(Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
Resolution
pdb|3CVO|C Chain C, Crystal Structure Of A Methyltransferase-Like Protein
(Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
Resolution
pdb|3CVO|D Chain D, Crystal Structure Of A Methyltransferase-Like Protein
(Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
Resolution
Length = 202
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 298 NSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRAT 337
STV A+ P HV + +DR + W ANPP T
Sbjct: 41 GSTVVAAELPGKHVTSVESDRAWARXXKAWLAANPPAEGT 80
>pdb|1P99|A Chain A, 1.7a Crystal Structure Of Protein Pg110 From
Staphylococcus Aureus
Length = 295
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 39/209 (18%)
Query: 8 VGMLCATVLAPILIFTSTF----------KDSYPSSWSWEHKSARVLSATTNGLDQSKTD 57
+ L TVLAP+ I++ K P+ S + ++ ++L A GL + K D
Sbjct: 110 ISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAA--GLIKLKKD 167
Query: 58 NPIR-QVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEK--KE 114
+ V D+T KH +I A D +A +D + + GV K K+
Sbjct: 168 FGLAGTVKDITSNP--KHL---KITAVDAQQTARALSDVDI-----AVINNGVATKAGKD 217
Query: 115 PTK--INNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQR 172
P I EK P + + D+ + K Y + + ++ KE Q+
Sbjct: 218 PKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHS-----------KEAQK 266
Query: 173 ALGDATKDSDLP-RIANDRLKAMEQSLAK 200
AL + KD + P ++ D +KA+E SLAK
Sbjct: 267 ALQEDVKDGEKPVNLSKDEIKAIETSLAK 295
>pdb|3TZT|A Chain A, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii.
pdb|3TZT|B Chain B, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii
Length = 276
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 398 YLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNP 457
+LPE L ++L+LD D +V L L D+ + A G+T + +N
Sbjct: 96 FLPE---NLGEILYLDPDXLVINPLDDLLRTDISDYILAAASHTGKT--------DXANN 144
Query: 458 LISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLI--- 514
+ + G+ + +L R + D ++ + NH L LP I
Sbjct: 145 VNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHXNLL-----LPDQDILNA 199
Query: 515 TFWKRTYPLDRF-WHVLGLGYNP----SVNQRDI----ERAAVIHYNGNMKPW 558
+ R YPLD ++ Y+ S Q D+ + V+H+ G KPW
Sbjct: 200 XYGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLXDHTVVLHFCGRDKPW 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,083,747
Number of Sequences: 62578
Number of extensions: 755714
Number of successful extensions: 2279
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2271
Number of HSP's gapped (non-prelim): 7
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)