Query 007832
Match_columns 588
No_of_seqs 334 out of 1338
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 7.9E-45 2.7E-49 370.6 16.2 258 279-581 4-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 5.3E-40 1.8E-44 339.2 17.3 249 281-574 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 3.5E-25 1.2E-29 231.7 14.2 226 279-576 3-255 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 6.5E-23 2.2E-27 208.3 12.1 207 283-561 8-224 (263)
5 3v1a_A Computational design, M 52.0 15 0.0005 27.9 3.7 37 137-173 6-42 (48)
6 1yzm_A FYVE-finger-containing 43.4 20 0.00068 27.4 3.3 37 136-172 6-42 (51)
7 1z0k_B FYVE-finger-containing 41.9 20 0.00069 29.1 3.3 38 136-173 24-61 (69)
8 1z0j_B FYVE-finger-containing 38.2 27 0.00091 27.5 3.4 38 136-173 13-50 (59)
9 3dfz_A SIRC, precorrin-2 dehyd 27.1 1.7E+02 0.0059 28.3 8.0 78 149-241 143-221 (223)
10 4e61_A Protein BIM1; EB1-like 24.1 62 0.0021 28.3 3.7 39 186-224 43-101 (106)
11 2lse_A Four helix bundle prote 28.7 18 0.0006 29.9 0.0 56 164-222 6-61 (101)
12 2dl1_A Spartin; SPG20, MIT, st 21.3 2.2E+02 0.0074 25.2 6.7 79 132-227 10-92 (116)
13 1iap_A Guanine nucleotide exch 21.1 9.7 0.00033 37.1 -2.2 37 292-329 17-56 (211)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=7.9e-45 Score=370.64 Aligned_cols=258 Identities=18% Similarity=0.209 Sum_probs=183.4
Q ss_pred CceEEEEEcCc--chhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEeecchhhhhcccchhh
Q 007832 279 RLFHYALFSDN--VLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPV 356 (588)
Q Consensus 279 ~~iHIa~~sDn--vlaasVvI~Sil~Ns~~p~~ivFHIvtd~i~~~~mk~wf~~n~~~~atI~v~nie~f~~L~~~y~p~ 356 (588)
-.+|||+++|. +.+++|+|+|++.|+++ ++++|||++++++.+..+.+...-...+.+|++..+.+ ++
T Consensus 4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~-------- 73 (276)
T 3tzt_A 4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DL-------- 73 (276)
T ss_dssp -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HH--------
Confidence 35999999996 46899999999999986 58999999999987654333221112345666665432 00
Q ss_pred hhhhccccceeEEecccccCCCCCcccCCCCCcchhhhHHhhhhccccC-CCeEEEEecCeeeccCchhhhccCCCCCee
Q 007832 357 LKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR-LNKVLFLDDDVVVQKDLSGLWSIDLKGKVN 435 (588)
Q Consensus 357 l~~l~s~~~~~y~F~~~~~~~~~~lk~r~~~yiS~~~y~Rf~IPeIlP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~vi 435 (588)
|.. +...+++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+++
T Consensus 74 -------------~~~----------~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~ 130 (276)
T 3tzt_A 74 -------------FSF----------AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYIL 130 (276)
T ss_dssp ---------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSE
T ss_pred -------------Hhc----------CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeE
Confidence 100 01134678999999999999994 999999999999999999999999999999
Q ss_pred Eeeeccccc-ccccccccccCCcccccCCCCCCCccccceeeeechHHHHhhHHHHHHHHHHHcCCccCCCCCCCchhhh
Q 007832 436 GAVETCGET-FHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLI 514 (588)
Q Consensus 436 aAVeDc~~~-~~r~~~yLn~s~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~~~n~~~~l~dqg~Ln~~ll 514 (588)
|||+||+.. +.+... ..+++...||||||||||||++||+.++++++++|++.+..... .++|+++|.
T Consensus 131 aav~d~~~~~~~~~~~---------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~ 199 (276)
T 3tzt_A 131 AAASHTGKTDMANNVN---------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDILNA 199 (276)
T ss_dssp EEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHH
T ss_pred EEEEecccchHHHHHH---------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhHHHH
Confidence 999999753 111111 11343446999999999999999999999999999987754322 345555668
Q ss_pred hhccCeeeccC-ccccccCCCCCC-----CCc----ccCCCcEEEEccCCCCCcccCCccchHHHHHHhhccCcchh
Q 007832 515 TFWKRTYPLDR-FWHVLGLGYNPS-----VNQ----RDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYL 581 (588)
Q Consensus 515 ~F~g~i~~Ld~-~WN~~~lgy~~~-----i~~----~~ie~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~~~fl 581 (588)
+|.|++++||. +||+++ |+... .+. ...++|+||||+|+.|||...+.++|+++||+|.++..++|
T Consensus 200 ~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 200 MYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp HHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred HHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 99999999998 999996 33210 011 12457999999999999999999999999999999887775
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=5.3e-40 Score=339.21 Aligned_cols=249 Identities=20% Similarity=0.267 Sum_probs=184.5
Q ss_pred eEEEEEcCc-c-hhhhHHHHHH-HhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEeecchhhhhcccchhhh
Q 007832 281 FHYALFSDN-V-LAAAVVVNST-VTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVL 357 (588)
Q Consensus 281 iHIa~~sDn-v-laasVvI~Si-l~Ns~~p~~ivFHIvtd~i~~~~mk~wf~~n~~~~atI~v~nie~f~~L~~~y~p~l 357 (588)
+|||+++|. + .+++|+++|+ +.|+. .+++|||++++++.+..+.....-...+.+|++..++.- +
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-~--------- 68 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-D--------- 68 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-G---------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-H---------
Confidence 699999996 4 6899999999 99875 479999999999877644332211112345555443310 0
Q ss_pred hhhccccceeEEecccccCCCCCcccCCCCCcchhhhHHhhhhccccCCCeEEEEecCeeeccCchhhhccCCCCCeeEe
Q 007832 358 KQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGA 437 (588)
Q Consensus 358 ~~l~s~~~~~y~F~~~~~~~~~~lk~r~~~yiS~~~y~Rf~IPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~g~viaA 437 (588)
| . ..+. ..+++|..+|+||++|++||+++||||||+|+||++||++||++|++|+++||
T Consensus 69 ------------~-----~---~~~~-~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aa 127 (311)
T 1g9r_A 69 ------------F-----A---GFPL-NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA 127 (311)
T ss_dssp ------------G-----T---TSCC-CCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEE
T ss_pred ------------H-----h---cCcc-ccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEE
Confidence 0 0 0010 13578899999999999999999999999999999999999999999999999
Q ss_pred eecccccc-cccccccccCCcccccCCCCCCCccccceeeeechHHHHhhHHHHHHHHHHHcCCccCC-CCCCCchhhhh
Q 007832 438 VETCGETF-HRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLW-KLGTLPPGLIT 515 (588)
Q Consensus 438 VeDc~~~~-~r~~~yLn~s~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~~~n~~~~l~-dqg~Ln~~ll~ 515 (588)
|+||.... ..+...+ ++.+..|||||||||||+++||+.++++++.+|++.+.....| |||. +|.+
T Consensus 128 v~d~~~~~~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~---lN~~ 195 (311)
T 1g9r_A 128 SIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDI---LNGL 195 (311)
T ss_dssp EECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHH---HHHH
T ss_pred EeccchhhhHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCH---HHHH
Confidence 99986421 1111111 4445678999999999999999999999999999876544333 4554 5578
Q ss_pred hccCeeeccCccccccCCCCC------CC----C----cccCCCcEEEEccCCCCCcccCCccchHHHHHHhh
Q 007832 516 FWKRTYPLDRFWHVLGLGYNP------SV----N----QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHV 574 (588)
Q Consensus 516 F~g~i~~Ld~~WN~~~lgy~~------~i----~----~~~ie~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl 574 (588)
|.|+++.||.+||++..++.. +. . ....++++||||+|+.|||...+.+++.++|..|.
T Consensus 196 f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~ 268 (311)
T 1g9r_A 196 FKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268 (311)
T ss_dssp HTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHH
T ss_pred HcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHH
Confidence 999999999999998642210 00 0 01234789999999999999998888877777666
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.92 E-value=3.5e-25 Score=231.68 Aligned_cols=226 Identities=14% Similarity=0.169 Sum_probs=147.7
Q ss_pred CceEEEEEcCc-c-hhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEeecchhhhhcccchhh
Q 007832 279 RLFHYALFSDN-V-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPV 356 (588)
Q Consensus 279 ~~iHIa~~sDn-v-laasVvI~Sil~Ns~~p~~ivFHIvtd~i~~~~mk~wf~~n~~~~atI~v~nie~f~~L~~~y~p~ 356 (588)
+..+|++++|. + .++.|++.|+..|+++ ..++| +++++++.+..+.+.... .. ++.++.+. ... +
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~~--v~~v~~l~---~~~-~- 69 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----DE--VITVDILD---SGD-S- 69 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----SE--EEECCTTS---TTS-T-
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----CE--EEEEeecC---Ccc-h-
Confidence 35778888875 4 5799999999999875 35666 678888876554433221 12 22222110 000 0
Q ss_pred hhhhccccceeEEecccccCCCCCcc-cCCCCCcchhhhHHhhhhccccCCCeEEEEecCeeeccCchhhhccCCCCCee
Q 007832 357 LKQLNSQSMIDYYFRAHRANSDSNLK-FRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVN 435 (588)
Q Consensus 357 l~~l~s~~~~~y~F~~~~~~~~~~lk-~r~~~yiS~~~y~Rf~IPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~g~vi 435 (588)
.++. +.++ ....+|+||++|++ ++++||||||+|+||.+||++||+++ .+
T Consensus 70 ----------------------~~~~~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~ 120 (333)
T 1ll2_A 70 ----------------------AHLTLMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----EL 120 (333)
T ss_dssp ----------------------THHHHHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SS
T ss_pred ----------------------hhccccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ce
Confidence 0000 0011 23579999999996 78999999999999999999999986 47
Q ss_pred EeeecccccccccccccccCCcccccCCCCCCCccccceeeeechHHHHhhHHHHHHHHHHHcCCccCCCCCCCchhhhh
Q 007832 436 GAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLIT 515 (588)
Q Consensus 436 aAVeDc~~~~~r~~~yLn~s~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~~~n~~~~l~dqg~Ln~~ll~ 515 (588)
|||+|++ + .+||||||||||+.. .+.+++.+++..+.. ++.++|..+|.+
T Consensus 121 aAv~d~~--------------------~---~~~fNsGvmlin~~~----~~~~~l~~~~~~~~~---~~~~DQ~~LN~~ 170 (333)
T 1ll2_A 121 SAAPDPG--------------------W---PDCFNSGVFVYQPSV----ETYNQLLHVASEQGS---FDGGDQGLLNTF 170 (333)
T ss_dssp EEEECSS--------------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHTCC---TTSSHHHHHHHH
T ss_pred eEEecCC--------------------C---CcceeeeEEEEeCCH----HHHHHHHHHHHhcCC---CCCCCHHHHHHH
Confidence 8887742 1 268999999998863 334555566554432 233444545567
Q ss_pred hccCe-----eeccCccccccCC-CCCCCC-cccCCCcEEEEccCCCCCcccCCcc-----------------chHHHHH
Q 007832 516 FWKRT-----YPLDRFWHVLGLG-YNPSVN-QRDIERAAVIHYNGNMKPWLEINIP-----------------KYRNYWT 571 (588)
Q Consensus 516 F~g~i-----~~Ld~~WN~~~lg-y~~~i~-~~~ie~~~IIHY~G~~KPW~~~~~~-----------------~y~~lW~ 571 (588)
|.+.+ ..||.+||++..+ |...-. .....+|+||||+|..|||...+.+ .+.+.||
T Consensus 171 f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW 250 (333)
T 1ll2_A 171 FNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWW 250 (333)
T ss_dssp TTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHH
T ss_pred HHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHH
Confidence 77543 7899999998642 221000 1124579999999999999876332 4567899
Q ss_pred Hhhcc
Q 007832 572 KHVDY 576 (588)
Q Consensus 572 kYl~~ 576 (588)
.+.+.
T Consensus 251 ~~~~~ 255 (333)
T 1ll2_A 251 DIFTT 255 (333)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88753
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.88 E-value=6.5e-23 Score=208.33 Aligned_cols=207 Identities=17% Similarity=0.204 Sum_probs=134.9
Q ss_pred EEEEcCc-c-hhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEeecchhhhhcccchhhhhhh
Q 007832 283 YALFSDN-V-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQL 360 (588)
Q Consensus 283 Ia~~sDn-v-laasVvI~Sil~Ns~~p~~ivFHIvtd~i~~~~mk~wf~~n~~~~atI~v~nie~f~~L~~~y~p~l~~l 360 (588)
+.+++|. + .++.|++.|+..+++. ..+++ +++++++.+..+.+-.. ... ++.++.+. ......+.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~----~~~--vi~V~~l~---~~~~~~~~-- 74 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETV----FDE--VIMVDVLD---SGDSAHLT-- 74 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----SSE--EEECCCCC---CCCHHHHH--
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHc----CCe--EEEeeecC---Ccchhhhh--
Confidence 3455664 4 5799999999998874 24444 66888887654443222 111 22222110 00000000
Q ss_pred ccccceeEEecccccCCCCCcccCCCCCcchhhhHHhhhhccccCCCeEEEEecCeeeccCchhhhccCCCCCeeEeeec
Q 007832 361 NSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVET 440 (588)
Q Consensus 361 ~s~~~~~y~F~~~~~~~~~~lk~r~~~yiS~~~y~Rf~IPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~g~viaAVeD 440 (588)
.+..+. + ..+|.|++++++. +++||||||+|++|.+||++||+++ .+|||.|
T Consensus 75 ---------------------~~~rp~-~-~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d 126 (263)
T 3u2u_A 75 ---------------------LMKRPE-L-GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPD 126 (263)
T ss_dssp ---------------------HTTCTT-G-GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEEC
T ss_pred ---------------------hhcCcc-h-hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEecc
Confidence 001122 2 3688999999987 5999999999999999999999987 4788877
Q ss_pred ccccccccccccccCCcccccCCCCCCCccccceeeeechHHHHhhHHHHHHHHHHHcCCccCCCCCCCchhhhhhcc--
Q 007832 441 CGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWK-- 518 (588)
Q Consensus 441 c~~~~~r~~~yLn~s~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~~~n~~~~l~dqg~Ln~~ll~F~g-- 518 (588)
.+ . .+||||||||||++ .++.+++.+++.........|||.| |.+|.+
T Consensus 127 ~~--------------------~---~~~fNsGv~li~p~----~~~~~~l~~~~~~~~~~~~~DQd~L---N~~f~~w~ 176 (263)
T 3u2u_A 127 PG--------------------W---PDCFNSGVFVYQPS----VETYNQLLHLASEQGSFDGGDQGIL---NTFFSSWA 176 (263)
T ss_dssp TT--------------------S---TTSEEEEEEEECCC----HHHHHHHHHHHHHHCCTTSSHHHHH---HHHTTTTT
T ss_pred CC--------------------C---CccccCeEEEEccc----HHHHHHHHHHHHhcCCCCcccHHHH---HHHhcccc
Confidence 42 1 25899999999986 3566667676665433333455554 567877
Q ss_pred ---CeeeccCccccccC-CCC--CCCCcccCCCcEEEEccCCCCCcccC
Q 007832 519 ---RTYPLDRFWHVLGL-GYN--PSVNQRDIERAAVIHYNGNMKPWLEI 561 (588)
Q Consensus 519 ---~i~~Ld~~WN~~~l-gy~--~~i~~~~ie~~~IIHY~G~~KPW~~~ 561 (588)
.++.||.+||++.. .|. +.. ....++++||||+|+.|||...
T Consensus 177 ~~~~~~~Lp~~yN~~~~~~y~~~~~~-~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 177 TTDIRKHLPFIYNLSSISIYSYLPAF-KVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp TSCGGGBCCGGGSEEHHHHHSSHHHH-HHHGGGCSEEECCSSSCGGGSE
T ss_pred ccCeeEeCCcccccccchhccccHHH-HhhcCCeEEEEECCCCcCCCCC
Confidence 78999999999853 222 111 1124579999999999999874
No 5
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=51.98 E-value=15 Score=27.87 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=33.5
Q ss_pred hhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 007832 137 LKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 173 (588)
Q Consensus 137 ~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 173 (588)
|+.|+++-+.|+.-|+..+.-.=+.=|.++++|+++-
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E 42 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHE 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988888899999999753
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=43.37 E-value=20 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.7
Q ss_pred hhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHH
Q 007832 136 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQR 172 (588)
Q Consensus 136 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~ 172 (588)
=|..|+++-+.|+.-|+..+.-.=+.=|..+++|+++
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ 42 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQD 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3789999999999999999998888888888888875
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=41.87 E-value=20 Score=29.06 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=34.0
Q ss_pred hhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 007832 136 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 173 (588)
Q Consensus 136 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 173 (588)
=|.+|+++-+.|+.-|+..+.-.=+.=|..+++|+++-
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 47899999999999999999988888899999998853
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=38.17 E-value=27 Score=27.53 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.5
Q ss_pred hhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 007832 136 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 173 (588)
Q Consensus 136 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 173 (588)
-|..|+++-|+|.--|+..+...=+.=|..+++|++.-
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~e 50 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHT 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 58899999999999999999988888888888888753
No 9
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=27.11 E-value=1.7e+02 Score=28.27 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=51.5
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHH-
Q 007832 149 SLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLR- 227 (588)
Q Consensus 149 ~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~- 227 (588)
.|...+....|++.||++|.+. ||++..+.++.|..+=.+.|+...|-..=-+-++.+ ++....
T Consensus 143 aIST~G~sP~la~~iR~~ie~~------------lp~~~~~~~~~~~~~R~~vk~~~~~~~~Rr~~~~~~---~~~~~~~ 207 (223)
T 3dfz_A 143 AISTDGASPLLTKRIKEDLSSN------------YDESYTQYTQFLYECRVLIHRLNVSKSRKHELLTEI---IDDQYRL 207 (223)
T ss_dssp EEECTTSCHHHHHHHHHHHHHH------------SCTHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHT---CSHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---hcchhhc
Confidence 4555567789999999998876 666777777777777777776665644332223332 333333
Q ss_pred HHHHHHHHHHHHhh
Q 007832 228 VHKKQTLFLTQLTA 241 (588)
Q Consensus 228 ~~~~q~~~~~~la~ 241 (588)
..++|..|+..|..
T Consensus 208 ~~~~~~~~~~~l~~ 221 (223)
T 3dfz_A 208 SLVKQREFLQQIEK 221 (223)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHh
Confidence 66788888887754
No 10
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.10 E-value=62 Score=28.29 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHhhccC--------------------CccHHHHHHHHHHHHHHHHH
Q 007832 186 IANDRLKAMEQSLAKGKQI--------------------QDDCAAVVKKLRAMLHSTEE 224 (588)
Q Consensus 186 ~~~~~~~~m~~~~~~~~~~--------------------~~d~~~~~~kl~~~~~~~e~ 224 (588)
+--.|++..|.++-.+... .-+-..+.+|+.++|++|||
T Consensus 43 FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 43 FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhcccc
Confidence 5677888888888777552 11245678999999999997
No 11
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.69 E-value=18 Score=29.94 Aligned_cols=56 Identities=14% Similarity=0.364 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Q 007832 164 RLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHST 222 (588)
Q Consensus 164 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~d~~~~~~kl~~~~~~~ 222 (588)
+.-+..+|.+|.+.+.++ |.++.++|.++..-+..--+.. |.++++.|.|.-+..|
T Consensus 6 kklleklekildevtdga--pdearerieklakdvkdeleeg-daknmiekfrdemeqm 61 (101)
T 2lse_A 6 KKLLEKLEKILDEVTDGA--PDEARERIEKLAKDVKDELEEG-DAKNMIEKFRDEMEQM 61 (101)
Confidence 344556778888888776 7788888877765544333333 8889999988755443
No 12
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.27 E-value=2.2e+02 Score=25.22 Aligned_cols=79 Identities=11% Similarity=0.200 Sum_probs=49.9
Q ss_pred hHHHhhhhHHHHHHhhcccc---ccCCchHHHHHHHH-HHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhccCCcc
Q 007832 132 FRVRQLKDQLIKAKVYLSLP---AMRNNANFVRELRL-RIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDD 207 (588)
Q Consensus 132 ~~~~~~~dq~~~a~~y~~~a---~~~~~~~~~~el~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~d 207 (588)
..++.+|+.=-.|..|++-| -+.++.+.+.+|.+ -|+|+++.|+--....+-....-++.+.
T Consensus 10 ~~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~-------------- 75 (116)
T 2dl1_A 10 AEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQ-------------- 75 (116)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH--------------
Confidence 35677777777777776433 23467777877754 5999999888766544333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007832 208 CAAVVKKLRAMLHSTEEQLR 227 (588)
Q Consensus 208 ~~~~~~kl~~~~~~~e~~~~ 227 (588)
+..||+..+.++.+++.
T Consensus 76 ---lq~KM~~nL~~v~~RL~ 92 (116)
T 2dl1_A 76 ---MQQKMKETLQNVRTRLE 92 (116)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 34566677777777763
No 13
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=21.13 E-value=9.7 Score=37.12 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhhcCCCCcEEEEEEeC---cccHHHHHHHHh
Q 007832 292 AAAVVVNSTVTHAKHPSNHVFHIVTD---RLNYAAMRMWFL 329 (588)
Q Consensus 292 aasVvI~Sil~Ns~~p~~ivFHIvtd---~i~~~~mk~wf~ 329 (588)
+++|.++=++.|+ +|..+.||++|| ..+...|+.||.
T Consensus 17 HLaVFL~yV~sq~-DPspLLfYL~tdlYk~~~~Ke~rk~~~ 56 (211)
T 1iap_A 17 HLMALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAFL 56 (211)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CchhhHHHHHHHHHhccChHHHHHHHH
Confidence 5899999999988 688999999998 456778999984
Done!