BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007833
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
D+Y LG+S+ + +++ Y++ AM HPD+N G+++A FK+++ AYEVL DS K
Sbjct: 4 DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 349 RKAYD 353
R AYD
Sbjct: 62 RAAYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
D+Y LG+S+ + +++ Y++ AM HPD+N G+++A FK+++ AYEVL DS K
Sbjct: 4 DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 349 RKAYD 353
R AYD
Sbjct: 62 RAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
D+Y LG+S+ + +++ Y++ AM HPD+N G+++A FK+++ AYEVL DS K
Sbjct: 4 DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 349 RKAYD 353
R AYD
Sbjct: 62 RAAYD 66
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350
Y LGL + N +K+ YRK A+ HPDKN N +A + FK++ NA+ +L D+ KR
Sbjct: 20 YHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 351 AYD 353
YD
Sbjct: 78 IYD 80
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
D+Y LG+ R N +K+ Y + A HPD N + KA E F +L AYEVL D K
Sbjct: 8 DYYQILGVPR--NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 349 RKAYD 353
RK YD
Sbjct: 66 RKQYD 70
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 23/103 (22%)
Query: 290 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFK 348
+Y L + R + D +K+ YR+KA+ HPDKN N E A + FK++ AYEVL D K
Sbjct: 4 YYEILDVPRSASAD--DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEAD 391
R+ YD + GR G G+G S A+
Sbjct: 62 REIYD--------------------RYGREGLTGTGTGPSRAE 84
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
D+Y LGL+R +KR YR++A+ HPDKN A E FK++ AY+VL D K
Sbjct: 4 DYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60
Query: 349 RKAYD 353
R+ +D
Sbjct: 61 REIFD 65
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 283 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEV 342
R + D+Y+ LG +V+ IL E++ +A+ HPDK+ N KAVE F+KLQ A E+
Sbjct: 15 RSEDTEDYYTLLGCDELSSVE-QILA-EFKVRALECHPDKHPENPKAVETFQKLQKAKEI 72
Query: 343 LFDSFKRKAYDDELRREELLDYFRRFQS 370
L + R Y D RR ++ F+++++
Sbjct: 73 LTNEESRARY-DHWRRSQMSMPFQQWEA 99
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
T +Y LG+ N LK+ YRK A+ HPDKN NE E FK++ AYEVL D+
Sbjct: 6 TTYYDVLGVK--PNATQEELKKAYRKLALKYHPDKN-PNEG--EKFKQISQAYEVLSDAK 60
Query: 348 KRKAYD 353
KR+ YD
Sbjct: 61 KRELYD 66
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
D+Y LG+SR LK+ YR+ A+ HPDKN A EAFK + AY VL + K
Sbjct: 8 DYYEILGVSR--GASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEK 64
Query: 349 RKAYD 353
RK YD
Sbjct: 65 RKQYD 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
T +Y LG+ + + LK+ YRK A+ HPDKN E FK++ AYEVL D
Sbjct: 8 TGYYDVLGVK--PDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDEK 62
Query: 348 KRKAYD 353
KR+ YD
Sbjct: 63 KRQIYD 68
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSF 347
D+Y L + R +K+ YRK A+ HPDKN N E+A FK++ AYEVL D+
Sbjct: 10 DYYEVLDVPR--QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 348 KRKAYD 353
KR YD
Sbjct: 68 KRDIYD 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSF 347
++Y LG+ + +K+ YRK A+ HPDKN N E+A + FK + AYEVL DS
Sbjct: 10 NYYEVLGVQ--ASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 348 KRKAYD 353
KR YD
Sbjct: 68 KRSLYD 73
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350
YS LG+S+ +++ ++K A+ +HPDKN N A F K+ AYEVL D RK
Sbjct: 24 YSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 351 AYD 353
YD
Sbjct: 82 KYD 84
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
T Y LG+S N LK+ YRK A+ HPDK G+ E FK++ A+E+L D
Sbjct: 8 TKLYDLLGVSPSANEQE--LKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQ 62
Query: 348 KRKAYD 353
KR+ YD
Sbjct: 63 KREIYD 68
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEV 342
D YS LG + ++S LK++Y+K ++ HPDK + E+ V+ F ++ A+++
Sbjct: 11 DWYSILGAD--PSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 343 LFDSFKRKAYD-----DELRREELLDYFRRFQSASQKNGRHGFF-----GSGYARSEADC 392
L + ++ YD D+LR +D + S G H F+ G Y+ S+ +
Sbjct: 69 LGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEA 128
Query: 393 DDPFGESRRIACKKCN 408
+ E I+C C+
Sbjct: 129 E----EVSLISCDTCS 140
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350
YS LG+S+ +++ ++K A+ +HPDKN N A F K+ AYEVL D RK
Sbjct: 5 YSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 351 AYD 353
YD
Sbjct: 63 KYD 65
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 307 LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL 362
+K Y ++ L HPD+N G+ +A E F ++ AY VL + R+ YD L +E L
Sbjct: 34 IKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDL 89
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 285 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344
+ D+Y+ LG+ + D+ +K YR+ A HPD + N+ A FK L A+EVL
Sbjct: 25 MELKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAWEVLK 81
Query: 345 DSFKRKAYDDELRREELLDYFRRFQSASQKNGRHGF 380
D +R YD + + R+ Q+ Q + F
Sbjct: 82 DEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDF 117
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 307 LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYD 353
+K+ + K AM HPDKN + A F+++ AYE L D+ +RK YD
Sbjct: 24 IKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANRRKEYD 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
D Y LG+SR + +K+ Y+K A HPDKN + A + F ++ AYE+L + K
Sbjct: 18 DPYRVLGVSR--TASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEK 74
Query: 349 RKAYD 353
R YD
Sbjct: 75 RTNYD 79
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEA-FKKLQNAYEVLFDSF 347
D+Y+ +G+ + D+ +K YR+ A HPD + E EA FK++ A+EVL D
Sbjct: 6 DYYAIMGVKPTD--DLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSDEQ 61
Query: 348 KRKAYD 353
+R YD
Sbjct: 62 RRAEYD 67
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEV 342
D YS LG + ++S LK++Y+K +L HPDK + E+ ++ F ++ A+++
Sbjct: 17 DWYSILGAD--PSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 343 LFDSFKRKAYD 353
L + +K YD
Sbjct: 75 LGNEETKKKYD 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 279 DEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKL 336
D + R+ N D + LG+ + D + + YRK A+L+HPDK + G+E +AFK +
Sbjct: 18 DAIRRIRNSKDSWDMLGVKPGASRDE--VNKAYRKLAVLLHPDKCVAPGSE---DAFKAV 72
Query: 337 QNAYEVLFDSFK 348
NA L + K
Sbjct: 73 VNARTALLKNIK 84
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 284 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAY 340
L NC Y L ++R E D L + YR A HPD+ E+ A E F+ + AY
Sbjct: 14 LENC---YDVLEVNR-EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAY 69
Query: 341 EVLFDSFKRKAYD 353
E L D + YD
Sbjct: 70 ETLKDDEAKTNYD 82
>pdb|1ZT2|A Chain A, Heterodimeric Structure Of The Core Primase.
pdb|1ZT2|C Chain C, Heterodimeric Structure Of The Core Primase
Length = 330
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 243 GEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENV 302
G P +P S+N PG ++ G+ + D+ ++R+ N S L + R N+
Sbjct: 207 GVPGYPGGSENAPGWVGRKNRGINGVTIDEQVTIDVKRLIRIPNSLHGKSGLIVKRVPNL 266
Query: 303 D 303
D
Sbjct: 267 D 267
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 302 VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358
+D S L++EYR+ HPD ++ E L AY L D +R Y +L R
Sbjct: 30 IDQSRLRKEYRQLQAQHHPDM---AQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLR 83
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 302 VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358
+D S L++EYR+ HPD ++ E L AY L D +R Y +L R
Sbjct: 22 IDQSRLRKEYRQLQAQHHPDM---AQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLR 75
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 294 LGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
LGL R ++ ++++ Y KK HPDK G+E E KK+ Y+ + D K
Sbjct: 17 LGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDE---EKMKKMNTLYKKMEDGVK 67
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 114
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 294 LGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
LGL R ++ ++++ Y KK HPDK G+E E KK+ Y+ + D K
Sbjct: 14 LGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDE---EKMKKMNTLYKKMEDGVK 64
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 283 RLLNCT---DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN----EKAVEAFKK 335
RLL + D+Y LG+ R N + + YRK A+ HPD N N +KA + F
Sbjct: 374 RLLKQSQKRDYYKILGVKR--NAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFID 430
Query: 336 LQNAYEVLFDSFKRKAYDD 354
+ A EVL D RK +DD
Sbjct: 431 IAAAKEVLSDPEXRKKFDD 449
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 283 RLLNCT---DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN----EKAVEAFKK 335
RLL + D+Y LG+ R N + + YRK A+ HPD N N +KA + F
Sbjct: 374 RLLKQSQKRDYYKILGVKR--NAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFID 430
Query: 336 LQNAYEVLFDSFKRKAYDD 354
+ A EVL D RK +DD
Sbjct: 431 IAAAKEVLSDPEMRKKFDD 449
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,064,186
Number of Sequences: 62578
Number of extensions: 593498
Number of successful extensions: 1222
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 36
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)