Query 007833
Match_columns 588
No_of_seqs 365 out of 2367
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 15:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0720 Molecular chaperone (D 100.0 3.9E-74 8.5E-79 605.8 1.6 447 38-547 11-460 (490)
2 COG0484 DnaJ DnaJ-class molecu 100.0 3.7E-48 7.9E-53 407.1 15.7 233 287-540 3-266 (371)
3 PRK14296 chaperone protein Dna 100.0 1.9E-39 4.1E-44 345.7 12.8 229 287-535 3-270 (372)
4 PRK14282 chaperone protein Dna 100.0 6.7E-39 1.5E-43 341.2 11.6 232 287-536 3-274 (369)
5 PRK14288 chaperone protein Dna 100.0 1.4E-38 3.1E-43 338.7 13.6 222 288-535 3-255 (369)
6 PRK14286 chaperone protein Dna 100.0 2.7E-38 5.8E-43 336.9 14.5 226 287-536 3-268 (372)
7 PRK14287 chaperone protein Dna 100.0 2.7E-38 5.8E-43 336.8 11.9 226 287-537 3-261 (371)
8 PRK14278 chaperone protein Dna 100.0 6.7E-38 1.5E-42 334.5 14.4 225 288-536 3-261 (378)
9 PRK14279 chaperone protein Dna 100.0 4.3E-38 9.4E-43 337.3 12.2 228 287-536 8-291 (392)
10 PRK14285 chaperone protein Dna 100.0 4.7E-38 1E-42 334.3 12.4 226 288-536 3-264 (365)
11 PTZ00037 DnaJ_C chaperone prot 100.0 7.5E-38 1.6E-42 337.7 13.5 224 288-544 28-292 (421)
12 PRK14276 chaperone protein Dna 100.0 5E-38 1.1E-42 335.6 12.0 232 287-538 3-270 (380)
13 PRK14277 chaperone protein Dna 100.0 9.4E-38 2E-42 334.2 14.1 224 287-536 4-277 (386)
14 PRK14284 chaperone protein Dna 100.0 1E-37 2.2E-42 334.5 14.1 227 288-536 1-276 (391)
15 PRK14298 chaperone protein Dna 100.0 4.2E-38 9.2E-43 335.9 11.1 219 287-536 4-263 (377)
16 PRK14280 chaperone protein Dna 100.0 1.8E-37 3.8E-42 331.1 11.6 217 288-535 4-264 (376)
17 PRK14297 chaperone protein Dna 100.0 5.3E-37 1.1E-41 327.8 15.2 226 288-535 4-269 (380)
18 PRK14294 chaperone protein Dna 100.0 6E-37 1.3E-41 325.9 15.4 224 287-536 3-262 (366)
19 PRK14301 chaperone protein Dna 100.0 4.8E-37 1E-41 327.4 13.1 223 287-536 3-262 (373)
20 PRK14281 chaperone protein Dna 100.0 1.1E-36 2.3E-41 327.1 15.3 240 288-546 3-306 (397)
21 PRK14291 chaperone protein Dna 100.0 1.4E-36 3E-41 324.8 12.7 221 288-535 3-272 (382)
22 PRK10767 chaperone protein Dna 100.0 3E-36 6.4E-41 321.0 13.7 220 287-536 3-260 (371)
23 PRK14295 chaperone protein Dna 100.0 1.5E-36 3.3E-41 325.2 11.3 227 288-536 9-284 (389)
24 TIGR02349 DnaJ_bact chaperone 100.0 2.7E-36 5.8E-41 319.4 12.5 217 289-536 1-265 (354)
25 PRK14290 chaperone protein Dna 100.0 7.9E-36 1.7E-40 317.2 14.2 224 288-536 3-268 (365)
26 PRK14289 chaperone protein Dna 100.0 8.1E-36 1.8E-40 319.2 14.0 237 287-542 4-282 (386)
27 KOG0712 Molecular chaperone (D 100.0 7.8E-36 1.7E-40 310.4 13.0 215 287-531 3-243 (337)
28 PRK14293 chaperone protein Dna 100.0 3E-35 6.5E-40 313.7 15.4 234 288-540 3-269 (374)
29 PRK14300 chaperone protein Dna 100.0 3.2E-35 6.9E-40 313.3 14.7 227 288-546 3-285 (372)
30 PRK14283 chaperone protein Dna 100.0 5.1E-35 1.1E-39 312.3 14.7 239 287-545 4-289 (378)
31 PRK14292 chaperone protein Dna 100.0 8.2E-35 1.8E-39 310.0 14.3 230 288-542 2-266 (371)
32 KOG0715 Molecular chaperone (D 99.9 1.3E-26 2.7E-31 239.6 9.4 201 288-511 43-256 (288)
33 KOG0713 Molecular chaperone (D 99.9 2.1E-26 4.5E-31 238.0 10.8 74 282-357 10-83 (336)
34 PRK10266 curved DNA-binding pr 99.8 7.2E-20 1.6E-24 190.9 10.5 67 287-356 3-69 (306)
35 KOG0716 Molecular chaperone (D 99.7 1.3E-18 2.8E-23 175.6 5.7 68 288-357 31-98 (279)
36 KOG0691 Molecular chaperone (D 99.7 1.7E-18 3.6E-23 179.1 6.2 70 287-358 4-73 (296)
37 PRK14299 chaperone protein Dna 99.7 6.2E-18 1.3E-22 175.4 6.5 68 287-357 3-70 (291)
38 PF14901 Jiv90: Cleavage induc 99.7 7.5E-18 1.6E-22 146.3 3.1 90 398-496 2-93 (94)
39 PF00226 DnaJ: DnaJ domain; I 99.7 3.3E-17 7.1E-22 132.2 5.5 63 289-353 1-64 (64)
40 KOG0717 Molecular chaperone (D 99.7 3.8E-17 8.2E-22 174.3 7.0 68 287-356 7-75 (508)
41 KOG0718 Molecular chaperone (D 99.6 1.9E-16 4.1E-21 169.1 5.4 69 287-357 8-79 (546)
42 PTZ00341 Ring-infected erythro 99.6 4.1E-16 8.8E-21 178.6 6.6 70 286-358 571-640 (1136)
43 KOG0719 Molecular chaperone (D 99.6 8E-16 1.7E-20 152.5 5.1 69 287-357 13-83 (264)
44 smart00271 DnaJ DnaJ molecular 99.6 2.4E-15 5.3E-20 119.3 6.4 59 288-348 1-60 (60)
45 COG2214 CbpA DnaJ-class molecu 99.6 2.4E-15 5.3E-20 144.0 6.2 67 287-355 5-72 (237)
46 cd06257 DnaJ DnaJ domain or J- 99.5 8.4E-15 1.8E-19 114.1 6.4 55 289-345 1-55 (55)
47 KOG0721 Molecular chaperone (D 99.5 2E-14 4.3E-19 141.5 6.5 74 283-358 94-167 (230)
48 KOG0624 dsRNA-activated protei 99.5 5.2E-14 1.1E-18 146.6 7.2 68 286-355 392-462 (504)
49 PHA03102 Small T antigen; Revi 99.5 3.4E-14 7.5E-19 134.7 5.1 65 288-358 5-71 (153)
50 TIGR03835 termin_org_DnaJ term 99.5 4.4E-14 9.5E-19 159.1 6.6 67 288-357 2-68 (871)
51 PRK05014 hscB co-chaperone Hsc 99.4 3.5E-13 7.6E-18 130.2 6.7 70 288-357 1-75 (171)
52 PRK01356 hscB co-chaperone Hsc 99.4 8E-13 1.7E-17 127.2 6.4 70 288-357 2-74 (166)
53 PRK03578 hscB co-chaperone Hsc 99.4 9E-13 1.9E-17 127.9 6.5 70 288-357 6-80 (176)
54 PRK00294 hscB co-chaperone Hsc 99.3 1.9E-12 4.1E-17 125.3 7.1 71 287-357 3-78 (173)
55 KOG0550 Molecular chaperone (D 99.3 1.2E-12 2.6E-17 139.2 6.0 68 286-355 371-439 (486)
56 KOG0714 Molecular chaperone (D 99.3 1.6E-12 3.5E-17 130.6 3.9 69 287-357 2-71 (306)
57 KOG1150 Predicted molecular ch 99.3 4.6E-12 1E-16 123.3 5.7 88 265-354 24-118 (250)
58 KOG0722 Molecular chaperone (D 99.3 2.1E-12 4.5E-17 129.7 2.9 69 288-359 33-101 (329)
59 PTZ00100 DnaJ chaperone protei 99.1 2.7E-11 5.8E-16 110.0 4.4 51 288-344 65-115 (116)
60 PRK09430 djlA Dna-J like membr 99.1 4.9E-11 1.1E-15 122.8 6.1 56 288-345 200-262 (267)
61 PHA02624 large T antigen; Prov 99.1 8E-11 1.7E-15 131.8 5.4 59 288-352 11-71 (647)
62 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.0 2.3E-10 4.9E-15 94.1 5.2 65 404-483 1-66 (66)
63 COG5407 SEC63 Preprotein trans 98.9 8.4E-10 1.8E-14 118.3 4.4 69 287-357 97-170 (610)
64 PRK01773 hscB co-chaperone Hsc 98.9 3.9E-09 8.4E-14 102.4 6.6 70 288-357 2-76 (173)
65 TIGR00714 hscB Fe-S protein as 98.8 4.9E-09 1.1E-13 100.2 6.1 57 301-357 2-63 (157)
66 COG5269 ZUO1 Ribosome-associat 98.7 8.9E-09 1.9E-13 104.6 4.0 69 287-355 42-113 (379)
67 KOG1789 Endocytosis protein RM 98.2 1.2E-06 2.6E-11 101.5 5.2 55 288-345 1281-1337(2235)
68 PLN03165 chaperone protein dna 98.1 4.5E-06 9.7E-11 75.7 5.2 61 399-486 39-99 (111)
69 KOG0568 Molecular chaperone (D 97.7 4E-05 8.7E-10 77.0 5.1 55 288-345 47-102 (342)
70 KOG0723 Molecular chaperone (D 97.2 0.00048 1E-08 61.8 5.2 50 292-347 60-109 (112)
71 TIGR02642 phage_xxxx uncharact 97.1 0.00043 9.4E-09 68.2 3.9 40 460-501 101-142 (186)
72 KOG3192 Mitochondrial J-type c 96.8 0.0012 2.5E-08 63.1 4.1 72 285-356 5-81 (168)
73 COG1107 Archaea-specific RecJ- 96.4 0.0015 3.2E-08 73.3 2.1 69 402-484 3-79 (715)
74 KOG0431 Auxilin-like protein a 96.0 0.0083 1.8E-07 66.7 5.3 43 302-344 400-449 (453)
75 COG1076 DjlA DnaJ-domain-conta 95.6 0.0082 1.8E-07 58.4 3.0 54 288-343 113-173 (174)
76 COG1076 DjlA DnaJ-domain-conta 95.3 0.0099 2.1E-07 57.8 2.2 67 289-355 2-73 (174)
77 COG0484 DnaJ DnaJ-class molecu 94.4 0.025 5.5E-07 61.2 2.6 49 400-470 158-208 (371)
78 PRK14282 chaperone protein Dna 93.9 0.16 3.4E-06 55.1 7.4 26 487-512 301-327 (369)
79 KOG2813 Predicted molecular ch 93.6 0.037 7.9E-07 58.5 1.9 33 460-496 247-279 (406)
80 KOG2813 Predicted molecular ch 93.4 0.096 2.1E-06 55.4 4.6 24 458-485 234-257 (406)
81 PF05297 Herpes_LMP1: Herpesvi 93.2 0.024 5.3E-07 59.0 0.0 31 128-160 104-142 (381)
82 PF00684 DnaJ_CXXCXGXG: DnaJ c 92.8 0.086 1.9E-06 43.3 2.6 50 399-469 13-66 (66)
83 PRK14279 chaperone protein Dna 91.5 0.13 2.8E-06 56.3 2.9 23 490-512 320-343 (392)
84 PRK14300 chaperone protein Dna 91.1 0.14 3.1E-06 55.5 2.7 25 488-512 291-316 (372)
85 PRK10767 chaperone protein Dna 90.9 0.21 4.4E-06 54.2 3.7 49 401-471 159-207 (371)
86 PRK14290 chaperone protein Dna 90.6 1 2.3E-05 48.8 8.7 24 489-512 296-320 (365)
87 PRK14301 chaperone protein Dna 90.5 0.18 3.8E-06 54.9 2.7 22 491-512 292-314 (373)
88 PRK14286 chaperone protein Dna 90.2 0.2 4.4E-06 54.4 2.9 24 488-511 296-320 (372)
89 PRK14288 chaperone protein Dna 89.8 0.21 4.6E-06 54.2 2.6 23 489-511 285-308 (369)
90 TIGR02349 DnaJ_bact chaperone 89.8 0.24 5.3E-06 53.2 3.0 23 490-512 294-317 (354)
91 PRK14295 chaperone protein Dna 89.7 0.24 5.3E-06 54.1 3.0 25 488-512 312-337 (389)
92 PRK14294 chaperone protein Dna 89.6 0.24 5.2E-06 53.7 2.8 34 491-525 292-326 (366)
93 PTZ00037 DnaJ_C chaperone prot 89.4 0.27 5.8E-06 54.4 3.1 24 487-510 299-325 (421)
94 PRK14285 chaperone protein Dna 89.4 0.23 4.9E-06 53.9 2.4 24 488-511 292-316 (365)
95 PRK14291 chaperone protein Dna 89.2 0.29 6.2E-06 53.4 3.1 26 488-513 301-327 (382)
96 PRK14284 chaperone protein Dna 89.1 0.22 4.9E-06 54.4 2.2 25 489-513 306-331 (391)
97 PRK14296 chaperone protein Dna 88.9 0.31 6.6E-06 53.0 3.0 20 491-510 302-322 (372)
98 PRK14276 chaperone protein Dna 88.9 0.31 6.7E-06 53.1 3.1 12 401-412 163-174 (380)
99 PRK14277 chaperone protein Dna 88.4 0.39 8.5E-06 52.4 3.4 49 401-471 172-224 (386)
100 PRK14278 chaperone protein Dna 88.3 0.33 7.2E-06 52.8 2.8 25 488-512 289-314 (378)
101 PRK14298 chaperone protein Dna 88.3 0.26 5.6E-06 53.7 2.0 21 491-511 293-314 (377)
102 PRK14280 chaperone protein Dna 87.8 0.39 8.5E-06 52.2 3.0 22 490-511 294-316 (376)
103 PRK14281 chaperone protein Dna 87.5 0.41 8.9E-06 52.5 3.0 22 490-511 313-335 (397)
104 PF03656 Pam16: Pam16; InterP 87.2 1.2 2.5E-05 41.8 5.3 51 291-347 61-111 (127)
105 PRK14289 chaperone protein Dna 87.1 0.36 7.8E-06 52.7 2.2 23 490-512 305-328 (386)
106 PRK14283 chaperone protein Dna 86.8 0.56 1.2E-05 51.0 3.5 50 400-471 162-215 (378)
107 COG1107 Archaea-specific RecJ- 86.7 0.37 7.9E-06 54.8 2.0 33 397-443 49-81 (715)
108 PRK14287 chaperone protein Dna 86.7 0.48 1E-05 51.5 2.9 48 401-470 155-206 (371)
109 TIGR02642 phage_xxxx uncharact 86.4 0.36 7.8E-06 47.9 1.6 34 399-445 97-130 (186)
110 PRK14293 chaperone protein Dna 85.7 0.59 1.3E-05 50.8 3.0 21 491-511 295-316 (374)
111 PRK14297 chaperone protein Dna 85.6 0.56 1.2E-05 51.1 2.8 23 490-512 299-322 (380)
112 PLN03165 chaperone protein dna 85.4 0.79 1.7E-05 41.9 3.2 44 403-471 54-98 (111)
113 KOG0724 Zuotin and related mol 83.9 1 2.2E-05 47.9 3.8 55 302-356 4-62 (335)
114 TIGR03835 termin_org_DnaJ term 82.6 0.91 2E-05 53.5 2.9 64 479-545 687-765 (871)
115 PRK14292 chaperone protein Dna 80.1 1.3 2.7E-05 48.2 2.8 22 491-512 290-312 (371)
116 COG4709 Predicted membrane pro 79.9 27 0.00058 35.0 11.5 42 86-127 82-123 (195)
117 PF14687 DUF4460: Domain of un 77.5 4.8 0.0001 36.8 5.3 47 301-347 5-55 (112)
118 PF11808 DUF3329: Domain of un 74.3 8.5 0.00018 33.6 5.8 28 116-143 11-38 (90)
119 PRK11598 putative metal depend 72.0 24 0.00052 40.6 10.2 40 95-134 51-94 (545)
120 PF10011 DUF2254: Predicted me 71.6 1.6E+02 0.0035 32.2 18.7 140 64-210 11-162 (371)
121 PF09605 Trep_Strep: Hypotheti 71.2 83 0.0018 31.0 12.6 61 134-194 58-122 (186)
122 PRK11644 sensory histidine kin 69.9 1.2E+02 0.0026 34.2 15.1 74 127-203 136-234 (495)
123 PF13446 RPT: A repeated domai 68.8 7.5 0.00016 31.3 3.9 26 289-316 6-31 (62)
124 PF03208 PRA1: PRA1 family pro 68.5 20 0.00042 33.7 7.3 47 141-187 65-112 (153)
125 PF14362 DUF4407: Domain of un 67.8 14 0.00029 38.8 6.7 21 303-323 154-174 (301)
126 PF11833 DUF3353: Protein of u 62.3 12 0.00027 37.3 4.9 36 301-344 3-38 (194)
127 PF03208 PRA1: PRA1 family pro 61.3 58 0.0013 30.5 9.0 36 138-174 100-135 (153)
128 KOG2824 Glutaredoxin-related p 61.1 6.6 0.00014 41.2 2.8 51 402-480 230-280 (281)
129 COG0178 UvrA Excinuclease ATPa 58.7 8.8 0.00019 45.9 3.5 43 425-496 732-774 (935)
130 TIGR00630 uvra excinuclease AB 58.3 5 0.00011 48.8 1.5 42 424-492 737-778 (924)
131 TIGR02185 Trep_Strep conserved 58.2 1.7E+02 0.0037 28.9 12.1 33 135-167 61-93 (189)
132 PF08507 COPI_assoc: COPI asso 57.4 1.6E+02 0.0036 27.3 11.8 48 96-143 33-80 (136)
133 PF11044 TMEMspv1-c74-12: Plec 57.1 12 0.00026 29.0 2.8 27 177-203 3-29 (49)
134 KOG2946 Uncharacterized conser 56.2 9.6 0.00021 38.9 2.9 38 129-169 158-195 (234)
135 smart00778 Prim_Zn_Ribbon Zinc 55.7 8 0.00017 28.7 1.7 31 400-430 2-32 (37)
136 PF03547 Mem_trans: Membrane t 54.9 1.2E+02 0.0026 32.4 11.2 10 179-188 111-120 (385)
137 KOG2041 WD40 repeat protein [G 52.8 69 0.0015 38.2 9.2 32 6-37 657-692 (1189)
138 KOG3618 Adenylyl cyclase [Gene 50.9 2.4E+02 0.0053 34.2 13.1 133 52-204 69-201 (1318)
139 PF12725 DUF3810: Protein of u 49.8 1.8E+02 0.0039 31.2 11.4 63 290-353 84-156 (318)
140 PRK01766 multidrug efflux prot 48.4 4E+02 0.0086 29.1 18.4 42 139-180 353-394 (456)
141 PRK00349 uvrA excinuclease ABC 48.1 16 0.00035 44.7 3.6 42 424-492 739-780 (943)
142 PRK11383 hypothetical protein; 47.5 2E+02 0.0043 27.7 9.9 60 94-158 9-83 (145)
143 PF08273 Prim_Zn_Ribbon: Zinc- 47.4 9.8 0.00021 28.8 1.1 31 400-430 2-33 (40)
144 cd03031 GRX_GRX_like Glutaredo 46.9 18 0.0004 34.5 3.1 46 401-470 99-144 (147)
145 TIGR00947 2A73 probable bicarb 46.1 4.5E+02 0.0098 29.1 14.2 23 179-201 206-228 (425)
146 PF12036 DUF3522: Protein of u 46.1 82 0.0018 31.2 7.6 23 130-152 115-137 (186)
147 PRK09598 lipid A phosphoethano 46.1 1.5E+02 0.0032 34.1 10.7 19 95-113 49-67 (522)
148 PRK12585 putative monovalent c 45.9 85 0.0018 31.6 7.5 14 103-116 16-29 (197)
149 PF04156 IncA: IncA protein; 45.8 1E+02 0.0022 29.9 8.2 15 118-132 18-32 (191)
150 KOG2824 Glutaredoxin-related p 45.3 24 0.00052 37.2 3.8 32 399-430 238-269 (281)
151 PHA03239 envelope glycoprotein 45.0 1.2E+02 0.0025 34.2 9.3 56 94-149 254-309 (429)
152 PRK14559 putative protein seri 44.6 13 0.00027 43.7 1.9 50 402-483 2-51 (645)
153 PF12805 FUSC-like: FUSC-like 43.7 71 0.0015 33.2 7.1 74 97-170 3-87 (284)
154 PF04632 FUSC: Fusaric acid re 43.0 1.9E+02 0.0041 33.2 11.1 84 52-141 331-416 (650)
155 cd03031 GRX_GRX_like Glutaredo 42.2 15 0.00033 35.1 1.7 32 399-430 108-140 (147)
156 COG1480 Predicted membrane-ass 42.1 6.8E+02 0.015 30.0 15.4 33 131-163 351-386 (700)
157 TIGR00630 uvra excinuclease AB 40.8 15 0.00032 44.9 1.8 37 401-444 736-773 (924)
158 KOG4800 Neuronal membrane glyc 40.7 1.5E+02 0.0032 30.7 8.5 50 96-161 57-106 (248)
159 PF01098 FTSW_RODA_SPOVE: Cell 40.2 2.4E+02 0.0053 30.2 10.8 34 63-96 67-101 (358)
160 PF04216 FdhE: Protein involve 39.8 12 0.00026 39.2 0.7 59 401-481 172-246 (290)
161 PF03348 Serinc: Serine incorp 39.5 2.2E+02 0.0048 31.9 10.5 48 80-127 64-126 (429)
162 PRK00488 pheS phenylalanyl-tRN 39.2 15 0.00032 39.9 1.3 32 398-454 257-288 (339)
163 COG0600 TauC ABC-type nitrate/ 38.9 3.4E+02 0.0074 28.3 11.2 94 63-156 12-127 (258)
164 PRK10189 MATE family multidrug 38.8 6E+02 0.013 28.4 14.6 27 152-178 386-412 (478)
165 PRK03564 formate dehydrogenase 38.8 22 0.00048 38.1 2.5 30 400-429 186-218 (309)
166 PRK00635 excinuclease ABC subu 37.6 18 0.00039 47.1 1.9 21 474-494 1631-1651(1809)
167 COG0266 Nei Formamidopyrimidin 37.5 50 0.0011 34.9 4.8 28 401-430 245-272 (273)
168 PF14800 DUF4481: Domain of un 37.5 49 0.0011 35.3 4.7 17 96-112 72-88 (308)
169 COG1198 PriA Primosomal protei 36.6 34 0.00073 40.8 3.8 54 397-482 431-484 (730)
170 PRK10726 hypothetical protein; 35.8 1.6E+02 0.0035 26.8 7.0 63 89-152 40-104 (105)
171 PRK10209 acid-resistance membr 35.6 4.2E+02 0.0091 26.1 10.8 11 117-127 56-66 (190)
172 COG0628 yhhT Predicted permeas 35.2 4.1E+02 0.0088 28.4 11.5 44 178-221 304-347 (355)
173 PF09726 Macoilin: Transmembra 35.1 8.7E+02 0.019 29.2 16.9 22 98-119 75-96 (697)
174 PRK14714 DNA polymerase II lar 34.8 26 0.00057 43.8 2.6 59 401-492 667-728 (1337)
175 TIGR00844 c_cpa1 na(+)/h(+) an 34.7 4E+02 0.0087 32.5 12.1 10 189-198 361-370 (810)
176 PRK13857 type IV secretion sys 34.4 79 0.0017 29.4 4.9 37 135-171 72-108 (120)
177 PF10810 DUF2545: Protein of u 34.3 2.3E+02 0.0049 24.3 7.2 27 106-134 10-36 (80)
178 PF09726 Macoilin: Transmembra 34.2 4.9E+02 0.011 31.2 12.7 50 98-151 51-100 (697)
179 PRK14397 membrane protein; Pro 33.5 3.2E+02 0.0069 28.2 9.6 10 212-221 173-182 (222)
180 PF01528 Herpes_glycop: Herpes 33.1 4.5E+02 0.0096 29.2 11.3 64 94-157 231-294 (374)
181 PF07331 TctB: Tripartite tric 32.6 3E+02 0.0065 25.0 8.7 26 139-164 79-104 (141)
182 COG5547 Small integral membran 32.1 65 0.0014 26.5 3.5 19 147-165 22-40 (62)
183 PRK13706 conjugal transfer pil 31.8 6.2E+02 0.014 26.5 12.9 132 26-168 17-170 (248)
184 PRK13387 1,4-dihydroxy-2-napht 31.8 1.8E+02 0.004 31.0 8.1 19 135-153 114-132 (317)
185 KOG1705 Uncharacterized conser 31.7 15 0.00033 32.6 -0.1 60 399-483 18-79 (110)
186 PF10329 DUF2417: Region of un 31.6 2.7E+02 0.0059 28.8 8.9 30 187-216 124-155 (232)
187 KOG3359 Dolichyl-phosphate-man 31.2 4.8E+02 0.01 31.4 11.7 20 173-192 259-278 (723)
188 KOG3807 Predicted membrane pro 31.1 1.4E+02 0.003 32.9 6.8 25 470-494 462-486 (556)
189 TIGR01473 cyoE_ctaB protoheme 30.8 4.3E+02 0.0093 27.4 10.5 21 70-90 46-66 (280)
190 PF05180 zf-DNL: DNL zinc fing 30.7 21 0.00046 29.9 0.6 40 403-442 6-48 (66)
191 PRK12287 tqsA pheromone autoin 30.5 7E+02 0.015 26.7 13.8 25 180-204 294-318 (344)
192 PF03904 DUF334: Domain of unk 30.4 2E+02 0.0043 29.7 7.5 19 181-200 201-219 (230)
193 PRK11827 hypothetical protein; 30.3 34 0.00075 28.1 1.8 35 401-439 8-42 (60)
194 PLN02922 prenyltransferase 30.3 97 0.0021 33.2 5.7 64 82-152 76-140 (315)
195 PF11239 DUF3040: Protein of u 30.2 1.2E+02 0.0025 26.0 5.1 23 127-149 54-76 (82)
196 cd06181 BI-1-like BAX inhibito 30.1 5.4E+02 0.012 25.3 16.5 39 73-111 51-90 (212)
197 PF13994 PgaD: PgaD-like prote 29.7 1.9E+02 0.0042 27.1 6.9 21 91-111 14-34 (138)
198 PHA03242 envelope glycoprotein 29.6 8.7E+02 0.019 27.5 14.3 71 94-164 245-315 (428)
199 PRK10907 intramembrane serine 29.5 4.6E+02 0.01 27.7 10.4 46 54-101 133-178 (276)
200 TIGR00751 menA 1,4-dihydroxy-2 28.5 3.9E+02 0.0084 28.2 9.7 18 136-153 110-127 (284)
201 PF07092 DUF1356: Protein of u 28.5 27 0.00059 36.1 1.1 25 472-496 37-63 (238)
202 PRK02983 lysS lysyl-tRNA synth 28.4 8.5E+02 0.018 30.8 13.9 50 58-110 11-67 (1094)
203 TIGR01652 ATPase-Plipid phosph 28.2 1E+03 0.022 29.7 14.7 12 193-204 1022-1033(1057)
204 TIGR01562 FdhE formate dehydro 28.0 44 0.00095 35.8 2.6 17 307-323 100-116 (305)
205 PF05915 DUF872: Eukaryotic pr 27.9 1.6E+02 0.0035 27.2 5.9 7 182-188 94-100 (115)
206 KOG0956 PHD finger protein AF1 27.9 35 0.00075 40.2 1.9 78 403-489 50-150 (900)
207 PRK09459 pspG phage shock prot 27.9 3.6E+02 0.0077 23.4 7.4 9 145-153 55-63 (76)
208 PF03811 Zn_Tnp_IS1: InsA N-te 27.8 43 0.00092 24.7 1.7 13 399-411 3-15 (36)
209 PRK04023 DNA polymerase II lar 27.7 40 0.00088 41.4 2.4 29 460-491 653-681 (1121)
210 COG4662 TupA ABC-type tungstat 27.6 3.1E+02 0.0066 28.0 8.1 104 92-221 16-124 (227)
211 COG3086 RseC Positive regulato 27.6 1.4E+02 0.003 28.9 5.6 35 108-142 74-110 (150)
212 PRK14299 chaperone protein Dna 27.4 20 0.00043 37.7 -0.1 50 488-544 155-219 (291)
213 PRK10245 adrA diguanylate cycl 27.4 3.7E+02 0.0079 29.1 9.6 17 94-110 99-115 (366)
214 PRK01637 hypothetical protein; 27.4 4.5E+02 0.0099 27.3 10.0 16 185-200 244-259 (286)
215 PF03833 PolC_DP2: DNA polymer 27.3 21 0.00045 43.0 0.0 30 460-492 682-711 (900)
216 PF13719 zinc_ribbon_5: zinc-r 27.0 30 0.00066 25.3 0.8 29 401-430 2-32 (37)
217 TIGR02755 TraX_Ftype type-F co 26.7 7.2E+02 0.016 25.6 11.7 20 62-86 34-53 (224)
218 cd00084 HMG-box High Mobility 26.7 76 0.0016 24.6 3.2 44 307-355 11-54 (66)
219 KOG4453 Predicted ER membrane 26.6 5.5E+02 0.012 26.8 9.8 51 9-62 68-118 (269)
220 KOG0510 Ankyrin repeat protein 26.5 7.5E+02 0.016 30.4 12.2 100 9-121 564-674 (929)
221 COG5552 Uncharacterized conser 26.4 1.7E+02 0.0037 25.3 5.2 47 287-336 2-48 (88)
222 KOG3142 Prenylated rab accepto 26.3 1.5E+02 0.0032 29.7 5.8 22 134-156 88-109 (187)
223 PF13260 DUF4051: Protein of u 26.3 35 0.00076 27.0 1.1 22 146-171 2-23 (54)
224 PRK10862 SoxR reducing system 26.1 2.4E+02 0.0052 27.1 7.0 12 110-121 76-87 (154)
225 KOG4112 Signal peptidase subun 26.0 1.5E+02 0.0032 26.8 5.0 22 119-140 30-51 (101)
226 PTZ00370 STEVOR; Provisional 26.0 79 0.0017 33.7 4.0 32 121-152 245-276 (296)
227 PF07331 TctB: Tripartite tric 26.0 5E+02 0.011 23.5 11.6 27 54-80 34-60 (141)
228 PF02673 BacA: Bacitracin resi 25.7 3.6E+02 0.0078 28.2 8.8 26 57-82 36-61 (259)
229 PRK14416 membrane protein; Pro 25.6 3.5E+02 0.0076 27.4 8.3 9 209-217 178-186 (200)
230 PF11026 DUF2721: Protein of u 25.5 2.1E+02 0.0046 26.6 6.4 27 100-126 62-88 (130)
231 PRK10160 taurine transporter s 25.4 7.7E+02 0.017 25.5 12.1 21 116-136 86-106 (275)
232 PRK07419 1,4-dihydroxy-2-napht 25.4 4.7E+02 0.01 27.9 9.7 18 135-152 119-136 (304)
233 COG2194 Predicted membrane-ass 25.3 1.1E+03 0.024 27.4 13.5 130 62-192 5-169 (555)
234 COG3851 UhpB Signal transducti 25.3 2.2E+02 0.0047 31.8 7.2 30 173-203 204-233 (497)
235 PF07264 EI24: Etoposide-induc 25.2 3.8E+02 0.0083 26.1 8.6 23 94-116 15-38 (219)
236 cd01388 SOX-TCF_HMG-box SOX-TC 25.0 84 0.0018 25.8 3.3 42 309-355 14-55 (72)
237 TIGR00595 priA primosomal prot 25.0 63 0.0014 36.8 3.3 54 398-483 210-263 (505)
238 PF06570 DUF1129: Protein of u 25.0 5E+02 0.011 25.8 9.4 16 77-92 90-105 (206)
239 PRK12392 bacteriochlorophyll c 24.7 3.7E+02 0.0079 29.1 8.9 16 137-152 127-142 (331)
240 PRK12887 ubiA tocopherol phyty 24.6 4.2E+02 0.0091 28.2 9.2 18 135-152 120-137 (308)
241 COG1030 NfeD Membrane-bound se 24.6 1.9E+02 0.004 32.7 6.7 26 105-130 227-252 (436)
242 KOG0712 Molecular chaperone (D 24.5 59 0.0013 35.3 2.8 10 335-344 20-29 (337)
243 COG1480 Predicted membrane-ass 24.3 9.6E+02 0.021 28.8 12.5 16 307-323 589-604 (700)
244 TIGR00844 c_cpa1 na(+)/h(+) an 24.1 1.1E+03 0.023 29.1 13.1 12 329-340 532-543 (810)
245 PRK05771 V-type ATP synthase s 24.0 1.1E+03 0.024 27.5 13.4 110 94-208 346-498 (646)
246 PF12955 DUF3844: Domain of un 23.9 90 0.002 28.4 3.4 29 94-122 65-93 (103)
247 PF12966 AtpR: N-ATPase, AtpR 23.8 2.4E+02 0.0052 24.6 5.9 54 148-206 15-72 (85)
248 TIGR01478 STEVOR variant surfa 23.6 95 0.0021 33.1 4.0 31 122-152 250-280 (295)
249 KOG2292 Oligosaccharyltransfer 23.5 94 0.002 36.0 4.2 86 120-205 147-259 (751)
250 PF07709 SRR: Seven Residue Re 23.5 43 0.00094 19.6 0.9 13 332-344 2-14 (14)
251 PLN00012 chlorophyll synthetas 23.5 4.3E+02 0.0094 29.1 9.3 100 114-225 171-280 (375)
252 PRK13591 ubiA prenyltransferas 23.5 1.3E+02 0.0029 32.3 5.1 16 138-153 122-137 (307)
253 TIGR02872 spore_ytvI sporulati 23.5 5.2E+02 0.011 26.8 9.7 67 136-204 252-329 (341)
254 PF07857 DUF1632: CEO family ( 23.0 1.7E+02 0.0036 30.7 5.7 81 53-154 22-102 (254)
255 PF04515 Choline_transpo: Plas 23.0 4.2E+02 0.0091 27.7 8.9 46 117-162 24-69 (334)
256 cd01390 HMGB-UBF_HMG-box HMGB- 23.0 96 0.0021 24.3 3.2 40 311-355 15-54 (66)
257 COG4758 Predicted membrane pro 22.7 4.2E+02 0.0091 27.6 8.3 19 153-172 28-46 (235)
258 PRK10794 cell wall shape-deter 22.5 1E+03 0.022 26.0 12.3 30 67-96 80-109 (370)
259 PRK00810 nifW nitrogenase stab 22.5 90 0.002 28.8 3.2 40 279-318 10-52 (113)
260 COG1289 Predicted membrane pro 22.4 3.9E+02 0.0085 31.4 9.3 22 135-156 408-429 (674)
261 TIGR02538 type_IV_pilB type IV 22.4 75 0.0016 36.7 3.3 27 470-496 485-511 (564)
262 COG0534 NorM Na+-driven multid 22.2 1E+03 0.022 26.4 12.2 71 48-132 15-85 (455)
263 PF06738 DUF1212: Protein of u 22.2 6.8E+02 0.015 24.1 9.6 21 42-62 84-106 (193)
264 COG4062 MtrB Tetrahydromethano 22.2 81 0.0018 28.6 2.7 20 128-147 79-98 (108)
265 COG1863 MnhE Multisubunit Na+/ 21.9 3.6E+02 0.0079 26.3 7.4 24 293-317 132-155 (158)
266 PF15190 DUF4583: Domain of un 21.9 1.2E+02 0.0027 28.4 3.9 33 189-221 4-43 (128)
267 TIGR02921 PEP_integral PEP-CTE 21.8 5.9E+02 0.013 30.2 10.0 106 95-212 7-112 (952)
268 PF06341 DUF1056: Protein of u 21.8 4.8E+02 0.01 21.8 7.4 40 97-143 6-45 (63)
269 TIGR02235 menA_cyano-plnt 1,4- 21.8 5.7E+02 0.012 26.9 9.5 18 135-152 106-123 (285)
270 PRK12287 tqsA pheromone autoin 21.7 7.9E+02 0.017 26.3 10.7 20 185-204 295-314 (344)
271 PRK10714 undecaprenyl phosphat 21.5 6.8E+02 0.015 26.5 10.1 25 116-140 229-253 (325)
272 TIGR00577 fpg formamidopyrimid 21.5 1.1E+02 0.0023 32.1 3.9 27 402-430 246-272 (272)
273 TIGR00757 RNaseEG ribonuclease 21.4 39 0.00084 37.6 0.8 20 300-319 163-182 (414)
274 KOG2592 Tumor differentially e 21.4 1.7E+02 0.0037 32.6 5.5 68 80-147 68-150 (426)
275 PF08113 CoxIIa: Cytochrome c 21.4 2E+02 0.0043 21.2 4.0 15 135-149 7-21 (34)
276 PF04094 DUF390: Protein of un 21.3 2E+02 0.0043 34.5 6.2 12 554-565 112-123 (828)
277 PF12434 Malate_DH: Malate deh 21.3 92 0.002 21.9 2.2 17 304-320 10-26 (28)
278 COG4758 Predicted membrane pro 21.2 7.1E+02 0.015 25.9 9.6 17 148-164 41-57 (235)
279 PRK05951 ubiA prenyltransferas 21.0 7.1E+02 0.015 26.2 10.0 18 135-152 116-133 (296)
280 COG4317 Uncharacterized protei 21.0 1.4E+02 0.0031 26.2 3.9 31 117-147 4-41 (93)
281 TIGR03717 R_switched_YjbE inte 20.9 8E+02 0.017 24.1 11.7 61 152-218 94-154 (176)
282 PHA03237 envelope glycoprotein 20.9 1.2E+03 0.027 26.3 14.7 67 94-160 248-314 (424)
283 KOG2927 Membrane component of 20.8 1.7E+02 0.0037 32.1 5.3 15 23-37 89-103 (372)
284 PF07158 MatC_N: Dicarboxylate 20.7 1.9E+02 0.0041 28.0 5.1 58 118-175 8-72 (149)
285 PF03142 Chitin_synth_2: Chiti 20.7 2.3E+02 0.005 32.8 6.6 9 66-74 374-382 (527)
286 TIGR00540 hemY_coli hemY prote 20.7 1.8E+02 0.0039 31.7 5.7 26 111-136 1-26 (409)
287 PF06161 DUF975: Protein of un 20.6 8.6E+02 0.019 24.3 14.3 25 96-120 49-73 (243)
288 PRK07566 bacteriochlorophyll/c 20.5 5.7E+02 0.012 27.2 9.2 19 135-153 132-150 (314)
289 PF09125 COX2-transmemb: Cytoc 20.5 76 0.0017 23.7 1.8 19 149-167 16-34 (38)
290 PF09297 zf-NADH-PPase: NADH p 20.4 52 0.0011 23.2 0.9 24 403-430 5-28 (32)
291 TIGR03155 sulfolob_CbsB cytoch 20.4 1E+03 0.023 25.2 11.8 45 89-133 42-86 (302)
292 PF14362 DUF4407: Domain of un 20.3 4.9E+02 0.011 27.2 8.7 22 57-78 8-29 (301)
293 cd01389 MATA_HMG-box MATA_HMG- 20.2 1.1E+02 0.0024 25.3 3.1 43 308-355 13-55 (77)
294 PTZ00043 cytochrome c oxidase 20.2 4.5E+02 0.0098 27.4 7.8 39 303-344 94-132 (268)
295 PF15125 TMEM238: TMEM238 prot 20.2 3.3E+02 0.0071 22.9 5.6 26 128-153 32-57 (65)
296 PF08792 A2L_zn_ribbon: A2L zi 20.1 60 0.0013 23.5 1.2 25 402-430 4-28 (33)
No 1
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-74 Score=605.75 Aligned_cols=447 Identities=41% Similarity=0.683 Sum_probs=356.9
Q ss_pred HHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 007833 38 LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF 117 (588)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 117 (588)
++...++.||.+..++...+|.+- +++|++.|++ .+|+||++||||+++|+|++++|+||||+++|.+||.++.|+
T Consensus 11 ~~~~~~k~~~~~~~~~p~~~~~~~---~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~~s~~ql~~~ 86 (490)
T KOG0720|consen 11 VKLRVYKGRDLVLTKMPLVFSVVF---MHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSANSMGQLTKF 86 (490)
T ss_pred ecccccchhhhhhhcCCcccchhh---ccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeecccccccccc
Confidence 455677778776555444444443 7889998888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccchhhHHHHHHHHHHHhhhhhhhhhhhH
Q 007833 118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGL 197 (588)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~~~~~gw~g~ 197 (588)
++.|+++.+++.|.|.++++.+++++|++++|+| +||.++.+-+- .+|+++|+ +.+.|+.|.+.++.+|++.
T Consensus 87 ~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~s~kt~w~~ 158 (490)
T KOG0720|consen 87 ILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSALSYKTWWGL 158 (490)
T ss_pred ccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceeeeccchhhhh
Confidence 9999999999999999999999999999999999 99998887776 88999988 7788999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 007833 198 LLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTS 277 (588)
Q Consensus 198 ~l~~nlsfls~diL~~~l~~~~e~~~~ss~~e~~~~~~~~~~~~s~~ss~~sss~~~~s~ss~~~~~~~s~~~~~s~~ts 277 (588)
++.+|+.++.-|...+|....+..+. -. ++ .+....+..+.++++...+..+-....+.+.+.++
T Consensus 159 ~~k~l~~~i~l~f~~~f~~~~~~~~~-~~----------r~----l~~vk~~~~e~g~~tv~~~~~g~~~e~~va~n~t~ 223 (490)
T KOG0720|consen 159 TLKLLRAVILLDFSIYFERNKIIQQT-AD----------RP----LEPVKDSGAEEGDETVESRDYGCKKEIPVATNATS 223 (490)
T ss_pred cchhhhhhhhhhcceeeeeehhhHHH-Hh----------hh----cchhhhhccccCCCchhcCCcccccccccccchhh
Confidence 99999999988877777764444331 00 00 11112222233333333444444555555566666
Q ss_pred -HHHHHHhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 278 -EDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 278 -~~e~~ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
.+++.|+++..|+|++|||++ ++|.++|||.|||+|...|||||. .|.|+|+||.|+.|||+|+|++||+.||..+
T Consensus 224 ~adrl~re~~~~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 224 FADRLSRELNILDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred HHHhhhhhhcCCCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 689999999999999999999 999999999999999999999998 6999999999999999999999999999987
Q ss_pred hhhhhh-hhhhhccccccCCCCccccCCCCCCCCCCCCCCCCcccccccccccCccceeeeccCcccccccccccccccc
Q 007833 357 RREELL-DYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA 435 (588)
Q Consensus 357 ~~~~~~-~~F~~F~~~~~~~g~~Gffgggf~rsr~~dE~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~a 435 (588)
.+++.. ..+..+-...+. ..|+ ..++|.|++|.++|+|++|.+++..+|+|++|+.+|||
T Consensus 301 ~kene~~~~~~~~~~~~~~----------------~~eE---A~ntI~CskC~n~H~r~~T~rs~s~AR~C~~C~~~H~A 361 (490)
T KOG0720|consen 301 KKENELHRQVISSLNDLQK----------------AVEE---ARNTIFCSKCGNTHFRVLTSRSPSQARWCAECGVKHPA 361 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------HHHH---HHhheehhhhcCcceeeeecCChhhhHHHHHhCccCcc
Confidence 665432 111111111110 1111 27889999999999999999999999999999999999
Q ss_pred cCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCcccCCCC-ccccCCCCCC
Q 007833 436 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHN-TSKGTSSGQR 514 (588)
Q Consensus 436 k~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~~~-r~~g~g~~~~ 514 (588)
|||+-|+|..+- |+ ++-+|+|+++++||+++|++|||+++.+++|++++||.+|-.-.+. +.++....|.
T Consensus 362 Kdgdiw~Ek~hl----gl-----~~tyy~c~DgkVYDITeWA~CQ~~~~~pntHr~~~Hi~~~~~~~~tq~s~~~~~~q~ 432 (490)
T KOG0720|consen 362 KDGDIWAEKSHL----GL-----TPTYYACMDGKVYDITEWAICQGMACSPNTHRVSYHINFGALISGTQRSRQQAQPQA 432 (490)
T ss_pred ccCCEeeeehhc----cc-----cceeeeecCCceEeehhhhhccccccCCCccCcchhhhhhhhcCcccccchhccccc
Confidence 999999998532 22 3556799999999999999999999999999999999988754422 3322222222
Q ss_pred CCCCCCCccccCCChhHHHHHHHHHHHhccccc
Q 007833 515 GGRMPPPNLEETMTEDEFLEWLQNAVQAGLFDN 547 (588)
Q Consensus 515 gg~~p~~~~~~~~~e~e~~~wl~~~~~~~~f~~ 547 (588)
.|.+..++ +|+||++|+||+.+||+|++
T Consensus 433 ---~~~~~pd~--~~~~f~~~~~q~~~s~~f~~ 460 (490)
T KOG0720|consen 433 ---PPADYPDE--LEREFQLPLGQAPNSGLFAA 460 (490)
T ss_pred ---CcccCcch--hhhhhccCCccccccchhcc
Confidence 22333333 88999999999999999999
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-48 Score=407.11 Aligned_cols=233 Identities=25% Similarity=0.390 Sum_probs=178.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhhhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 366 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~~~F~ 366 (588)
.+|||+||||++ +||++||||||||||++||||+|+++++|+|+||+|++||||||||+||+.||+++........|.
T Consensus 3 ~~dyYeiLGV~k--~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 3 KRDYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred ccchhhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 479999999999 999999999999999999999999889999999999999999999999999999876432111111
Q ss_pred hccccccCCC-----CccccCCCCC-------CCCCCC----------------CCCCCcccccccccccCccceeeecc
Q 007833 367 RFQSASQKNG-----RHGFFGSGYA-------RSEADC----------------DDPFGESRRIACKKCNNFHVWIETKK 418 (588)
Q Consensus 367 ~F~~~~~~~g-----~~Gffgggf~-------rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k 418 (588)
.+ +...+++ +..+|+++.+ +.++.| +..+.+++.+.|+.|+|+| ++
T Consensus 81 g~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsG-----ak 154 (371)
T COG0484 81 GF-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSG-----AK 154 (371)
T ss_pred CC-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCC-----CC
Confidence 11 0000000 0112322211 112221 3457789999999999998 88
Q ss_pred CcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCc
Q 007833 419 SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTS 498 (588)
Q Consensus 419 ~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~G 498 (588)
+++.+.+|++|+ |+|++++..+ + |+ ++++++|+ .|.|+|..++++|..|+|.|++.+.+.++|+||+|
T Consensus 155 ~gt~~~tC~tC~-------G~G~v~~~~~-~--g~-~~~~~~C~-~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaG 222 (371)
T COG0484 155 PGTDPKTCPTCN-------GSGQVRTVQR-T--GF-FSFQQTCP-TCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAG 222 (371)
T ss_pred CCCCCCcCCCCC-------CcCeEEEEEe-e--eE-EEEEEECC-CCccceeECCCCCCCCCCCCeEeeeeEEEEECCCC
Confidence 888999999999 9999887543 3 34 56788999 99999999999999999999999999999999999
Q ss_pred ccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHH
Q 007833 499 VTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAV 540 (588)
Q Consensus 499 v~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~ 540 (588)
|.+++ .+..|.|+++.+| +|++||++.+ .+|++|+..-++|
T Consensus 223 v~~g~~ir~~g~G~~g~~G-gp~GDLyv~i~v~~h~~F~R~g~dL 266 (371)
T COG0484 223 VDDGDRIRLSGEGEAGPNG-GPAGDLYVFVHVKPHPIFERDGDDL 266 (371)
T ss_pred CccCCEEEEecCcccCCCC-CCCccEEEEEEeecCCCeEECCCce
Confidence 97773 3555555555434 5666777766 8888888765443
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-39 Score=345.67 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=170.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhh----
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL---- 362 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~---- 362 (588)
.+|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+|||||+||+.||+++... ..
T Consensus 3 ~~dyY~~Lgv~~--~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~-~~~~~~ 78 (372)
T PRK14296 3 KKDYYEVLGVSK--TASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA-FDGSSG 78 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh-hcCCCC
Confidence 479999999999 899999999999999999999997 4889999999999999999999999999986421 00
Q ss_pred -----hhhhhccccc---cCCC----CccccCCCCC----CCCCCC----------------CCCCCcccccccccccCc
Q 007833 363 -----DYFRRFQSAS---QKNG----RHGFFGSGYA----RSEADC----------------DDPFGESRRIACKKCNNF 410 (588)
Q Consensus 363 -----~~F~~F~~~~---~~~g----~~Gffgggf~----rsr~~d----------------E~~~~isr~v~C~kC~Gs 410 (588)
..|..++... .... +..+|+++.+ +.++.+ +..+.+.+.+.|+.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~ 158 (372)
T PRK14296 79 FSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGS 158 (372)
T ss_pred cCcCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCC
Confidence 0011100000 0000 1122332211 112221 124556888999999999
Q ss_pred cceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeE
Q 007833 411 HVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHK 490 (588)
Q Consensus 411 G~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~ 490 (588)
| .........|+.|+ |+|.+.... ++++ +.++.+++|+ .|.|.|.....+|..|+|.|++.+.+.
T Consensus 159 G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~g~-~~~q~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~ 223 (372)
T PRK14296 159 G-----AESNSDIHICNNCH-------GTGEVLVQK-NMGF-FQFQQSAKCN-VCNGAGKIIKNKCKNCKGKGKYLERKK 223 (372)
T ss_pred c-----cCCCCCCccCCCCC-------CCceEEEEE-eccc-eEEEEEecCC-CcCCcceeecccccCCCCceEEEEEEE
Confidence 8 66677788999999 999887754 4566 4457888999 999999999999999999999999999
Q ss_pred EEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833 491 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW 535 (588)
Q Consensus 491 v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w 535 (588)
++|+||+|+.++ ..+.+|.|.....++.| +|++..+ .+|++|.+
T Consensus 224 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~-GDL~v~v~v~~h~~F~R 270 (372)
T PRK14296 224 IEVNIPKGIRPNQQIKLSQKGHASLNNGVN-GDLIIDIYLKESKVFEI 270 (372)
T ss_pred EEEEECCCCCCCCEEEEeccccCCCCCCCC-ccEEEEEEEeCCCCEEE
Confidence 999999999888 44666666654433334 4555544 77888887
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.7e-39 Score=341.15 Aligned_cols=232 Identities=25% Similarity=0.371 Sum_probs=171.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh----
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL---- 361 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~---- 361 (588)
.+|||+||||++ +||.+|||+|||+||++||||+|+++ +.|+++|++|++||++|+||++|+.||+++.....
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~ 80 (369)
T PRK14282 3 KKDYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ 80 (369)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc
Confidence 479999999999 99999999999999999999999864 67899999999999999999999999997642100
Q ss_pred ---------hhhhhhccccccCCCCccccCCC-------CCCCCCCC----------------CCCCCcccccccccccC
Q 007833 362 ---------LDYFRRFQSASQKNGRHGFFGSG-------YARSEADC----------------DDPFGESRRIACKKCNN 409 (588)
Q Consensus 362 ---------~~~F~~F~~~~~~~g~~Gffggg-------f~rsr~~d----------------E~~~~isr~v~C~kC~G 409 (588)
.++|..|.......-+..+|+++ ..+.++.+ +..+.+.+.+.|+.|+|
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G 160 (369)
T PRK14282 81 ETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGG 160 (369)
T ss_pred cCCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCc
Confidence 00011110000000011122211 00112222 12456788999999999
Q ss_pred ccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecccee
Q 007833 410 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTH 489 (588)
Q Consensus 410 sG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~ 489 (588)
+| .+.......|+.|+ |+|++.. .+++++|++|+ +++|+ .|.|.|....++|..|+|.+++.+.+
T Consensus 161 ~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 225 (369)
T PRK14282 161 TG-----VEPGSGYVTCPKCH-------GTGRIRE-ERRSFFGVFVS-ERTCE-RCGGTGKIPGEYCHECGGSGRIRRRV 225 (369)
T ss_pred cC-----CCCCCCCcCCCCCC-------CcCEEEE-EEEccCcceEE-EEECC-CCCCcceeCCCCCCCCCCceeEEEEE
Confidence 98 66666788999999 9998877 45678899775 66999 99999999999999999999999999
Q ss_pred EEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 490 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
.++|+||+|+.++ ..+.+|.|..+..+ .+++|++..+ .+|++|.+-
T Consensus 226 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~i~i~v~~h~~F~r~ 274 (369)
T PRK14282 226 RTTVKIPAGVEDGTVLRITGGGNAGYYG-GPYGDLYVIVRVRPDPRFKRS 274 (369)
T ss_pred EEEEEeCCCCCCCCEEEEecccCCCCCC-CCCCCEEEEEEEecCCcEEEe
Confidence 9999999999888 44666666654434 3445555545 788888863
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-38 Score=338.67 Aligned_cols=222 Identities=23% Similarity=0.360 Sum_probs=162.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-h------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-E------ 360 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~------ 360 (588)
.|||+||||++ +||.+|||||||+||++||||+|+++++|+++|++|++|||||+||+||+.||+++... +
T Consensus 3 ~dyY~vLgv~~--~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~ 80 (369)
T PRK14288 3 LSYYEILEVEK--HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQ 80 (369)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCc
Confidence 69999999999 99999999999999999999999877889999999999999999999999999986421 0
Q ss_pred --hhhhhh---hccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeeccC
Q 007833 361 --LLDYFR---RFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKS 419 (588)
Q Consensus 361 --~~~~F~---~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k~ 419 (588)
..++|. +|++.. .++.+..+....+.++.+ +..+.+.+.+.|+.|+|+| .+.
T Consensus 81 ~~~~~~f~~~~~~F~~~--fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G-----~~~ 153 (369)
T PRK14288 81 SDFSDFFEDLGSFFEDA--FGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG-----AKD 153 (369)
T ss_pred cccccchhhHHHHHHhh--cCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcc-----cCC
Confidence 001111 111100 000000000001112221 1234567889999999998 444
Q ss_pred cccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCcc
Q 007833 420 KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSV 499 (588)
Q Consensus 420 ~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv 499 (588)
. ....|+.|+ |+|.++... |++| ++++|+ .|.|.|.....+|..|+|.|++.+.+.++|+||+|+
T Consensus 154 ~-~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~ 218 (369)
T PRK14288 154 K-ALETCKQCN-------GQGQVFMRQ-----GFMS-FAQTCG-ACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGI 218 (369)
T ss_pred C-CCcCCCCCC-------CCcEEEEEe-----ceEE-EEEecC-CCCCCceEccccCccCCCcceEEEEEEEEEecCCCC
Confidence 3 678999999 999886632 4554 556999 999999999999999999999999999999999999
Q ss_pred cCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833 500 TSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW 535 (588)
Q Consensus 500 ~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w 535 (588)
.+++ .+.+|.|....+ ++++|++..+ .+|+.|.+
T Consensus 219 ~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~h~~f~R 255 (369)
T PRK14288 219 DDQNRMVLKNKGNEYEK--GKRGDLYLEARVKEDEHFKR 255 (369)
T ss_pred CCCCEEEEccCccCCCC--CCCCCEEEEEEEEECCCcEE
Confidence 8884 355555555333 3455555555 77888876
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-38 Score=336.93 Aligned_cols=226 Identities=25% Similarity=0.415 Sum_probs=169.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 359 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~------- 359 (588)
..|||+||||++ +||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+++...
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (372)
T PRK14286 3 ERSYYDILGVSK--SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG 80 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCC
Confidence 369999999999 99999999999999999999999877889999999999999999999999999976421
Q ss_pred --------------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccC
Q 007833 360 --------------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNN 409 (588)
Q Consensus 360 --------------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~G 409 (588)
++.++|++|++... .+.. ..+....+.++.+ ++.+.+.+.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~ffgg~~-~~~~-~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G 158 (372)
T PRK14286 81 FGQGAYTDFSDIFGDFGDIFGDFFGGGR-GGGS-GGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNG 158 (372)
T ss_pred CCCCCcccccccccchhhHHHHhhCCCc-cCCC-cccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcC
Confidence 01123333332100 0000 0000001112222 23456788999999999
Q ss_pred ccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecccee
Q 007833 410 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTH 489 (588)
Q Consensus 410 sG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~ 489 (588)
+| .+.......|+.|+ |+|.+.... |++| ++++|+ .|.|.|.....+|..|+|.|++.+.+
T Consensus 159 ~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~~ 219 (372)
T PRK14286 159 SG-----ASKGSSPTTCPDCG-------GSGQIRRTQ-----GFFS-VATTCP-TCRGKGTVISNPCKTCGGQGLQEKRR 219 (372)
T ss_pred CC-----cCCCCCCccCCCCc-------CeEEEEEEe-----ceEE-EEEeCC-CCCceeeEecccCCCCCCCcEEecce
Confidence 98 66666778999999 999886632 5665 677999 89999999999999999999999999
Q ss_pred EEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 490 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
.++|+||+|+.++ ..+.+|.|.....++ +++|++..+ .+|+.|.+-
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~i~i~v~~h~~F~R~ 268 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGG-PHGDLYVVTHIKKHELFERQ 268 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCC-CCceEEEEEEEccCCCEEEe
Confidence 9999999999888 446666666554443 445555555 788888773
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-38 Score=336.79 Aligned_cols=226 Identities=24% Similarity=0.377 Sum_probs=172.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 359 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~------- 359 (588)
..|||+||||++ +||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||+||+.||+++...
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~ 79 (371)
T PRK14287 3 KRDYYEVLGVDR--NASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG 79 (371)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC
Confidence 369999999999 999999999999999999999997 4789999999999999999999999999986421
Q ss_pred -------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeee
Q 007833 360 -------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 416 (588)
Q Consensus 360 -------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t 416 (588)
++.++|+.|+++. + + ......+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 80 ~~~~~f~~~~d~f~~~fgg~----~-~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G----- 148 (371)
T PRK14287 80 GGAGDFGGFSDIFDMFFGGG----G-G-RRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSG----- 148 (371)
T ss_pred CCCccccchHHHHHhhhccc----c-C-CCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcc-----
Confidence 0113344433210 0 0 000001112221 1245678899999999998
Q ss_pred ccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeC
Q 007833 417 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 496 (588)
Q Consensus 417 ~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp 496 (588)
.+....+..|+.|+ |+|++.+ .+++++|++++ +++|+ .|.|.|....++|+.|.|.+.+.+.+.++|+||
T Consensus 149 ~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 218 (371)
T PRK14287 149 AKPGTKPETCSHCG-------GSGQLNV-EQNTPFGRVVN-RRVCH-HCEGTGKIIKQKCATCGGKGKVRKRKKINVKVP 218 (371)
T ss_pred cCCCCCCcccCCCC-------CEEEEEE-EEecCCceEEE-EEeCC-CCCCCCccccccCCCCCCeeEEeeeEEEEEEEC
Confidence 56666778999999 9998876 45678899876 67999 899999999999999999999999999999999
Q ss_pred CcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHH
Q 007833 497 TSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQ 537 (588)
Q Consensus 497 ~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~ 537 (588)
+|+.++ ..+.+|.|....+++ +++|++..+ .+|+.|.+--
T Consensus 219 ~G~~~G~~i~~~G~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~G 261 (371)
T PRK14287 219 AGIDHGQQLRVSGQGEAGVNGG-PPGDLYVVFNVKPHEFFERDG 261 (371)
T ss_pred CcCCCCCEEEEccCCcCCCCCC-CCccEEEEEEEecCCCEEEec
Confidence 999888 446666666554343 344555544 7788887643
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.7e-38 Score=334.46 Aligned_cols=225 Identities=25% Similarity=0.342 Sum_probs=170.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh-------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------- 360 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~------- 360 (588)
+|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||++|+.||+++....
T Consensus 3 ~d~y~iLgv~~--~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~ 79 (378)
T PRK14278 3 RDYYGLLGVSR--NASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGG 79 (378)
T ss_pred CCcceecCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCC
Confidence 69999999999 899999999999999999999997 58899999999999999999999999999764200
Q ss_pred --------hhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeee
Q 007833 361 --------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 416 (588)
Q Consensus 361 --------~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t 416 (588)
+.++|++|+++. + .+ .+....+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 80 g~~~~f~~~~d~f~~ffgg~---g-~~-~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G----- 149 (378)
T PRK14278 80 GFGGGFGGLGDVFEAFFGGG---A-AS-RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKG----- 149 (378)
T ss_pred CCCcCcCchhHHHHHHhCCC---C-CC-CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCcc-----
Confidence 012233333210 0 00 000001112221 1245678899999999998
Q ss_pred ccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeC
Q 007833 417 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 496 (588)
Q Consensus 417 ~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp 496 (588)
.+.+.....|+.|+ |+|.+... ++.++|++|+ +++|+ .|.|.|.....+|..|.|.|++.+.+.++|+||
T Consensus 150 ~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 219 (378)
T PRK14278 150 TAGDSKPVTCDTCG-------GRGEVQTV-QRSFLGQVMT-SRPCP-TCRGVGEVIPDPCHECAGDGRVRARREITVKIP 219 (378)
T ss_pred CCCCCCceecCCcc-------CceEEEEE-EeccceeEEE-EEECC-CCCccceeeCCCCCCCCCceeEecceEEEEEEC
Confidence 66677788999999 99988774 4567788765 56899 899999999999999999999999999999999
Q ss_pred CcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 497 TSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 497 ~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
+|+.++ ..+.+|.|..+.++ .|++|++..+ .+|+.|.+-
T Consensus 220 ~G~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~~~~h~~F~R~ 261 (378)
T PRK14278 220 AGVGDGMRIRLAAQGEVGPGG-GPAGDLYVEVHEQPHDVFVRD 261 (378)
T ss_pred CCCCCCcEEEEccCcCCCCCC-CCCCCEEEEEEECcCCCEEEc
Confidence 999888 44666666655444 3444555555 778888763
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-38 Score=337.34 Aligned_cols=228 Identities=25% Similarity=0.421 Sum_probs=167.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh---hhhh-
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR---EELL- 362 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~---~~~~- 362 (588)
.+|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||+|||||+||+.||+++.. +...
T Consensus 8 ~~Dyy~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~ 85 (392)
T PRK14279 8 EKDFYKELGVSS--DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGG 85 (392)
T ss_pred ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccc
Confidence 379999999999 9999999999999999999999987789999999999999999999999999998631 0000
Q ss_pred ---------hh-----------hhhccccccCC---C----CccccCCCC------CCCCCCC----------------C
Q 007833 363 ---------DY-----------FRRFQSASQKN---G----RHGFFGSGY------ARSEADC----------------D 393 (588)
Q Consensus 363 ---------~~-----------F~~F~~~~~~~---g----~~Gffgggf------~rsr~~d----------------E 393 (588)
.. |.++++....+ + +.++|+++. .+.++.+ +
T Consensus 86 ~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~ 165 (392)
T PRK14279 86 RRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT 165 (392)
T ss_pred ccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence 00 11111100000 0 011222111 0112221 1
Q ss_pred CCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC
Q 007833 394 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA 473 (588)
Q Consensus 394 ~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~ 473 (588)
+.+.+.+.+.|+.|+|+| .+.......|+.|+ |+|++.... |++ +++++|+ .|.|.|..+.
T Consensus 166 ~~v~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~-~~~~~C~-~C~G~G~~i~ 226 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSG-----ARPGTSPKVCPTCN-------GSGVISRNQ-----GAF-GFSEPCT-DCRGTGSIIE 226 (392)
T ss_pred EEEeeeccccCCCCcccc-----ccCCCCCCCCCCCc-------ceEEEEEEe-----cce-EEEEecC-CCCceeEEeC
Confidence 245678899999999998 66666789999999 999886632 344 3568999 8999999999
Q ss_pred cccccCCCceeccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 474 TDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 474 ~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
.+|..|.|.|++.+++.++|+||+|+.++ ..+.+|.|.....++ |++|++..+ .+|++|.+-
T Consensus 227 ~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~i~i~v~~h~~F~R~ 291 (392)
T PRK14279 227 DPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGA-PSGDLYVTVHVRPDKVFGRD 291 (392)
T ss_pred CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCC-CCCCEEEEEEEecCCcceee
Confidence 99999999999999999999999999888 446666666544343 334555544 888888864
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-38 Score=334.28 Aligned_cols=226 Identities=25% Similarity=0.398 Sum_probs=167.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhhh--hh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLD--YF 365 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~~--~F 365 (588)
+|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||++|+.||+++... +.. .+
T Consensus 3 ~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~-~~~~~~~ 79 (365)
T PRK14285 3 RDYYEILGLSK--GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA-FEGGGGF 79 (365)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch-hccCCCc
Confidence 69999999999 99999999999999999999999877889999999999999999999999999976421 000 00
Q ss_pred hhcccccc-----CCC----CccccCCCC------CCCCCCC----------------CCCCCcccccccccccCcccee
Q 007833 366 RRFQSASQ-----KNG----RHGFFGSGY------ARSEADC----------------DDPFGESRRIACKKCNNFHVWI 414 (588)
Q Consensus 366 ~~F~~~~~-----~~g----~~Gffgggf------~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~ 414 (588)
..|.+... ... +..+|+++. .+.++.+ ++.+.+++.+.|+.|+|+|
T Consensus 80 ~~~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G--- 156 (365)
T PRK14285 80 EGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKK--- 156 (365)
T ss_pred cccCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcc---
Confidence 00000000 000 011222110 0112221 1245678899999999998
Q ss_pred eeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEE
Q 007833 415 ETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFH 494 (588)
Q Consensus 415 ~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~ 494 (588)
...+.....|+.|+ |+|++.. .+|++ +++++|+ .|.|.|....++|..|+|.|++.+++.++|+
T Consensus 157 --~~~~~~~~~C~~C~-------G~G~~~~-----~~G~~-~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 220 (365)
T PRK14285 157 --SEKGTSPSICNMCN-------GSGRVMQ-----GGGFF-RVTTTCP-KCYGNGKIISNPCKSCKGKGSLKKKETIELK 220 (365)
T ss_pred --cCCCCCCccCCCcc-------CceeEEe-----cCcee-EEeeecC-CCCCcccccCCCCCCCCCCCEEeccEEEEEE
Confidence 66667788999999 9997764 34776 5789999 9999999999999999999999999999999
Q ss_pred eCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 495 VNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 495 Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
||+|+.++ ..+.+|.|....+++.|+ |++..+ .+|++|.+-
T Consensus 221 Ip~G~~~G~~i~~~g~G~~~~~~~~~G-DL~v~i~v~~h~~f~R~ 264 (365)
T PRK14285 221 IPAGIDDNQQIKMRGKGSVNPDNQQYG-DLYIKILIKPHKIFKRN 264 (365)
T ss_pred ECCCCCCCCEEEEeeccccCCCCCCCC-CEEEEEEEecCCCeEEe
Confidence 99999988 457777776655443344 444444 777777653
No 11
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=7.5e-38 Score=337.73 Aligned_cols=224 Identities=23% Similarity=0.358 Sum_probs=169.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------- 359 (588)
+|||+||||++ +||.+|||||||+||++||||||++ .++|++|++||+||+||+||+.||+++...
T Consensus 28 ~d~Y~vLGV~~--~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~ 101 (421)
T PTZ00037 28 EKLYEVLNLSK--DCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA 101 (421)
T ss_pred hhHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCc
Confidence 79999999999 9999999999999999999999952 489999999999999999999999976421
Q ss_pred hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeeccCcccc
Q 007833 360 ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASA 423 (588)
Q Consensus 360 ~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k~~~~a 423 (588)
+..++|..|++.. . ....+.++.+ ++.+.+.+.+.|+.|+|+| .. ....
T Consensus 102 d~~d~f~~~Fggg----~-----~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G-----~~-~~~~ 166 (421)
T PTZ00037 102 DASDLFDLIFGGG----R-----KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHG-----GP-KDAF 166 (421)
T ss_pred chhhhHHHhhccc----c-----ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCC-----CC-CCCC
Confidence 1223444443310 0 0001112221 2345678899999999997 33 3467
Q ss_pred cccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec--CcccccCCCceeccceeEEEEEeCCcccC
Q 007833 424 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN--ATDWYICQGMRCPANTHKPSFHVNTSVTS 501 (588)
Q Consensus 424 r~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~--~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d 501 (588)
..|+.|+ |+|.+... +++++ |+|+++++|+ .|.|.|... .++|..|+|.|++.+.+.++|+||+|+.+
T Consensus 167 ~~C~~C~-------G~G~~~~~-~~~g~-~~~q~~~~C~-~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~d 236 (421)
T PTZ00037 167 VDCKLCN-------GQGIRVQI-RQMGS-MIHQTQSTCN-SCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPN 236 (421)
T ss_pred ccCCCCC-------CCCeEEEE-Eeecc-eeeEEEEeCC-CCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCC
Confidence 8999999 99976553 34555 7788999999 999999775 48999999999999999999999999988
Q ss_pred CC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhcc
Q 007833 502 KH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAGL 544 (588)
Q Consensus 502 ~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~~ 544 (588)
++ .+..|.|+... +.+++|++..+ .+|++|.+ |.+|+-.+-
T Consensus 237 G~~I~~~G~Gd~~~--~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~ 292 (421)
T PTZ00037 237 QHKITFHGEADEKP--NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFV 292 (421)
T ss_pred CcEEEEecccCCCC--CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCE
Confidence 84 35555555433 34455666655 78888887 466765554
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-38 Score=335.64 Aligned_cols=232 Identities=26% Similarity=0.416 Sum_probs=172.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhhhh--
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDY-- 364 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~~~-- 364 (588)
..|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||+.||+++... +...
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~-~~~~~~ 78 (380)
T PRK14276 3 NTEYYDRLGVSK--DASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG-ANGGFG 78 (380)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc-ccCCCC
Confidence 369999999999 999999999999999999999997 4789999999999999999999999999976421 0000
Q ss_pred -----hhhccccccCCC----CccccCCC------CCCCCCCC----------------CCCCCcccccccccccCccce
Q 007833 365 -----FRRFQSASQKNG----RHGFFGSG------YARSEADC----------------DDPFGESRRIACKKCNNFHVW 413 (588)
Q Consensus 365 -----F~~F~~~~~~~g----~~Gffggg------f~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~ 413 (588)
+..|........ +..+|+++ ..+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G-- 156 (380)
T PRK14276 79 GGAGGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSG-- 156 (380)
T ss_pred CCCCCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcc--
Confidence 000000000000 01122211 01112221 1245678899999999998
Q ss_pred eeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEE
Q 007833 414 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSF 493 (588)
Q Consensus 414 ~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V 493 (588)
.+.+.....|+.|+ |+|.+... +++++|++|+ +++|+ .|.|.|.....+|..|+|.|++.+.+.++|
T Consensus 157 ---~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V 223 (380)
T PRK14276 157 ---AKPGTSPVTCGKCH-------GSGVITVD-TQTPLGMMRR-QVTCD-VCHGTGKEIKEPCQTCHGTGHEKQAHTVSV 223 (380)
T ss_pred ---cCCCCCCccCCCCC-------CeeEEEEE-EecCCceEEE-EEECC-CCCCCCccccCCCCCCCCceEEEEEEEEEE
Confidence 66666788999999 99988774 5678899876 77999 899999999999999999999999999999
Q ss_pred EeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHH
Q 007833 494 HVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQN 538 (588)
Q Consensus 494 ~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~ 538 (588)
+||+|+.++ ..+.+|.|....+++ +++|++..+ .+|+.|.+--+
T Consensus 224 ~Ip~G~~~G~~i~l~G~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~G~ 270 (380)
T PRK14276 224 KIPAGVETGQQIRLQGQGEAGFNGG-PYGDLYVVFRVEPSKKFERDGS 270 (380)
T ss_pred EeCCCccCCcEEEEeccccCCCCCC-CCcCEEEEEEEEECcceeeecc
Confidence 999999888 446666666554443 445555555 88888887533
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.4e-38 Score=334.16 Aligned_cols=224 Identities=24% Similarity=0.375 Sum_probs=171.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh-----
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL----- 361 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~----- 361 (588)
..|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+++...-.
T Consensus 4 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14277 4 KKDYYEILGVDR--NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG 81 (386)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc
Confidence 479999999999 9999999999999999999999987788999999999999999999999999997642100
Q ss_pred ---------------------hhhhhhccccccCCCCccccCCCC-----CCCCCCC----------------CCCCCcc
Q 007833 362 ---------------------LDYFRRFQSASQKNGRHGFFGSGY-----ARSEADC----------------DDPFGES 399 (588)
Q Consensus 362 ---------------------~~~F~~F~~~~~~~g~~Gffgggf-----~rsr~~d----------------E~~~~is 399 (588)
.++|++|++ ++|+++. .+.++.+ +..+.++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~--------~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~ 153 (386)
T PRK14277 82 QGGFGQGGFGGGGFDFDFGGFGDIFEDIFG--------DFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVE 153 (386)
T ss_pred cCCcCCCCccccCccccccchhHHHHHhhc--------ccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEE
Confidence 011111111 0111110 0112221 1245678
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccC
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYIC 479 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C 479 (588)
+.+.|+.|+|+| .........|+.|+ |+|++.. .+++++|++|+. ++|+ .|.|.|..+..+|..|
T Consensus 154 r~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~~-~~C~-~C~G~G~~~~~~C~~C 218 (386)
T PRK14277 154 RFEKCDVCKGSG-----AKPGSKPVTCPVCH-------GTGQVRT-RQNTPFGRIVNI-RTCD-RCHGEGKIITDPCNKC 218 (386)
T ss_pred eeccCCCCCCCC-----cCCCCCCccCCCCC-------CEEEEEE-EEeccCceEEEE-EECC-CCCcceeeccCCCCCC
Confidence 899999999998 66666788999999 9998876 456788998765 6999 8999999999999999
Q ss_pred CCceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 480 QGMRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 480 ~G~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
+|.|++.+.+.++|+||+|+.+++ .+.+|.|.....++ +++|++..+ .+|++|.+-
T Consensus 219 ~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~ 277 (386)
T PRK14277 219 GGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGG-PNGDLYIVIKVKPHPLFKRE 277 (386)
T ss_pred CCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCC-CCccEEEEEEEecCCCeEEe
Confidence 999999999999999999998884 45666665543333 344555544 788888874
No 14
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-37 Score=334.48 Aligned_cols=227 Identities=26% Similarity=0.411 Sum_probs=168.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--hh----
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--EL---- 361 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~--~~---- 361 (588)
.|||+||||++ +||.+|||||||+||++||||+|++++.|+++|++|++||++|+||+||+.||+++... +.
T Consensus 1 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~ 78 (391)
T PRK14284 1 MDYYTILGVSK--TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGF 78 (391)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCc
Confidence 48999999999 89999999999999999999999887889999999999999999999999999986421 00
Q ss_pred -hhhh----------hhcccccc---CCCCccccCC-C--C-------CCCCCCC----------------CCCCCcccc
Q 007833 362 -LDYF----------RRFQSASQ---KNGRHGFFGS-G--Y-------ARSEADC----------------DDPFGESRR 401 (588)
Q Consensus 362 -~~~F----------~~F~~~~~---~~g~~Gffgg-g--f-------~rsr~~d----------------E~~~~isr~ 401 (588)
...| ..+++... ..-+..+|++ + + .+.++.+ ++.+.+.+.
T Consensus 79 ~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~ 158 (391)
T PRK14284 79 GGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY 158 (391)
T ss_pred CCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence 0001 00000000 0000112221 0 0 0112221 124556889
Q ss_pred cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCC
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 481 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G 481 (588)
+.|+.|+|+| .+.+.....|+.|+ |+|.+.... |++| ++++|+ .|.|.|....++|..|+|
T Consensus 159 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G 219 (391)
T PRK14284 159 KSCDACSGSG-----ANSSQGIKVCDRCK-------GSGQVVQSR-----GFFS-MASTCP-ECGGEGRVITDPCSVCRG 219 (391)
T ss_pred ccCCCCcccc-----cCCCCCCeecCccC-------CeeEEEEEe-----ceEE-EEEECC-CCCCCCcccCCcCCCCCC
Confidence 9999999998 66677789999999 999887532 5655 677999 999999999999999999
Q ss_pred ceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 482 MRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 482 ~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
.|++.+++.++|+||+|+.|++ .+.+|.|..+.+++ |++|++..+ .+|++|.+-
T Consensus 220 ~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~ 276 (391)
T PRK14284 220 QGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGA-PAGDLYVFIDVEPHPVFERR 276 (391)
T ss_pred cceecceEEEEEEECCCCCCCCEEEEeccccCCCCCC-CCCCEEEEEEEecCCCceee
Confidence 9999999999999999998884 46666666555443 444555555 888888874
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.2e-38 Score=335.88 Aligned_cols=219 Identities=28% Similarity=0.454 Sum_probs=169.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-h-----
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-E----- 360 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~----- 360 (588)
.+|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||+||+.||+++... +
T Consensus 4 ~~d~y~iLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (377)
T PRK14298 4 TRDYYEILGLSK--DASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSA 80 (377)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCc
Confidence 369999999999 999999999999999999999997 4789999999999999999999999999986421 0
Q ss_pred -----------hhhhhhhccccccCCCCccccCCC-----CCCCCCCC----------------CCCCCccccccccccc
Q 007833 361 -----------LLDYFRRFQSASQKNGRHGFFGSG-----YARSEADC----------------DDPFGESRRIACKKCN 408 (588)
Q Consensus 361 -----------~~~~F~~F~~~~~~~g~~Gffggg-----f~rsr~~d----------------E~~~~isr~v~C~kC~ 408 (588)
+.++|+.| |+++ ..+.++.+ +..+.+.+.+.|+.|+
T Consensus 81 ~~~~~~~~~~~~~d~f~~~------------Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~ 148 (377)
T PRK14298 81 EDIFRGADFGGFGDIFEMF------------FGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCS 148 (377)
T ss_pred ccccccCCcCcchhhhHhh------------hcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCC
Confidence 00122222 2211 01112221 1245678899999999
Q ss_pred CccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccce
Q 007833 409 NFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANT 488 (588)
Q Consensus 409 GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t 488 (588)
|+| .+.+.....|+.|+ |+|.+....+ +++|+ ++++++|+ .|.|.|+....+|..|+|.|++.+.
T Consensus 149 G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~~-~~~g~-~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 213 (377)
T PRK14298 149 GTG-----AKPGTSPKRCPTCG-------GTGQVTTTRS-TPLGQ-FVTTTTCS-TCHGRGQVIESPCPVCSGTGKVRKT 213 (377)
T ss_pred CCc-----ccCCCCCCcCCCCC-------CccEEEEEEe-cCcee-EEEEEeCC-CCCCCCcccCCCCCCCCCccEEEEE
Confidence 998 66677788999999 9998887544 54455 57899999 9999999999999999999999999
Q ss_pred eEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 489 HKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 489 ~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
+.++|+||+|+.+++ .+.+|.|.....+ .+++|++..+ .+|+.|.+-
T Consensus 214 ~~l~V~IppG~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~~h~~F~R~ 263 (377)
T PRK14298 214 RKITVNVPAGADSGLRLKLSGEGEAGSPG-APSGDLYIVLHVKEHDYFERV 263 (377)
T ss_pred EEEEecCCCCCCCCCEEEEecccCCCCCC-CCCcCEEEEEEEecCCCeEEE
Confidence 999999999998884 4666666554434 3344555544 788888873
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-37 Score=331.05 Aligned_cols=217 Identities=27% Similarity=0.419 Sum_probs=170.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh-------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------- 360 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~------- 360 (588)
.|||+||||++ +||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+++...-
T Consensus 4 ~~~y~iLgv~~--~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 80 (376)
T PRK14280 4 RDYYEVLGVSK--SASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGG 80 (376)
T ss_pred CChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCC
Confidence 69999999999 8999999999999999999999974 7899999999999999999999999999864210
Q ss_pred ------------hhhhhhhccccccCCCCccccCCC------CCCCCCCC----------------CCCCCccccccccc
Q 007833 361 ------------LLDYFRRFQSASQKNGRHGFFGSG------YARSEADC----------------DDPFGESRRIACKK 406 (588)
Q Consensus 361 ------------~~~~F~~F~~~~~~~g~~Gffggg------f~rsr~~d----------------E~~~~isr~v~C~k 406 (588)
+.++|+.| |+++ ..+.++.+ +..+.+++.+.|+.
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~------------fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~ 148 (376)
T PRK14280 81 GFGGGDFGGGFGFEDIFSSF------------FGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDT 148 (376)
T ss_pred CCCCCCccccccchhhHHHH------------hCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCC
Confidence 00122222 2211 01112221 23456788999999
Q ss_pred ccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecc
Q 007833 407 CNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPA 486 (588)
Q Consensus 407 C~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~ 486 (588)
|+|+| ...+.....|+.|+ |+|.+.. .+.+++|++| .+++|+ .|.|.|.....+|..|+|.|++.
T Consensus 149 C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~ 213 (376)
T PRK14280 149 CHGSG-----AKPGTSKETCSHCG-------GSGQVSV-EQNTPFGRVV-NRQTCP-HCNGTGQEIKEKCPTCHGKGKVR 213 (376)
T ss_pred CCCcc-----cCCCCCCccCCCCC-------CEEEEEE-EeecCCceEE-EEEEcC-CCCCCCceecCCCCCCCCceEEE
Confidence 99998 56666788999999 9998876 4566788876 577999 99999999999999999999999
Q ss_pred ceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833 487 NTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW 535 (588)
Q Consensus 487 ~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w 535 (588)
+.+.++|+||+|+.+++ .+.+|.|.....+ .+++|++..+ .+|+.|.+
T Consensus 214 ~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~~h~~F~R 264 (376)
T PRK14280 214 KRKKINVKIPAGVDNGQQIRVSGEGEPGVNG-GPAGDLYVVFRVRPHEFFER 264 (376)
T ss_pred EEEEEEEEeCCCCcCCcEEEEcccccCCCCC-CCCcCEEEEEEEecCCCeEE
Confidence 99999999999998884 4666666655444 3444555555 88888887
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.3e-37 Score=327.80 Aligned_cols=226 Identities=24% Similarity=0.386 Sum_probs=168.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh-------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------- 360 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~------- 360 (588)
.|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+++...-
T Consensus 4 ~d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~ 81 (380)
T PRK14297 4 KDYYEVLGLEK--GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFG 81 (380)
T ss_pred CChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCC
Confidence 69999999999 899999999999999999999998778899999999999999999999999999864210
Q ss_pred --------------hhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCc
Q 007833 361 --------------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNF 410 (588)
Q Consensus 361 --------------~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~Gs 410 (588)
+.++|++|++.. ..+.......+.++.+ +..+.+.+.+.|+.|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~fgg~----~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~ 157 (380)
T PRK14297 82 SGGFGGFDFSDMGGFGDIFDSFFGGG----FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGT 157 (380)
T ss_pred CCCCCCcCcccccchhHHHHHHhccC----ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccc
Confidence 012222222210 0000000001112222 124567889999999999
Q ss_pred cceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeE
Q 007833 411 HVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHK 490 (588)
Q Consensus 411 G~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~ 490 (588)
| .+++.....|+.|+ |.|.+... +++++|++| .+++|+ .|.|.|.....+|..|+|.|++.+.+.
T Consensus 158 G-----~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~ 222 (380)
T PRK14297 158 G-----AKPGTSPKTCDKCG-------GTGQIRVQ-RNTPLGSFV-STTTCD-KCGGSGKVIEDPCNKCHGKGKVRKNRK 222 (380)
T ss_pred c-----ccCCCcCccCCCcc-------CeEEEEEE-EEcCCceeE-EEEeCC-CCCCCceEcCCCCCCCCCCeEEEeEeE
Confidence 8 55666678999999 99988764 566778765 578999 899999999999999999999999999
Q ss_pred EEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833 491 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW 535 (588)
Q Consensus 491 v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w 535 (588)
++|+||+|+.++ ..+.+|.|.....++ +++|++..+ .+++.|.+
T Consensus 223 i~V~Ip~G~~~G~~I~l~g~G~~~~~~~-~~GDL~v~v~v~~h~~f~R 269 (380)
T PRK14297 223 IKVNVPAGVDTGNVIPLRGQGEHGKNGG-PTGDLYINIRVAPHKTFKR 269 (380)
T ss_pred EEEEeCCCCCCCcEEEEecCccCCCCCC-CCccEEEEEEEcCCCCEEE
Confidence 999999999888 446666655443333 344555544 77777754
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6e-37 Score=325.87 Aligned_cols=224 Identities=27% Similarity=0.397 Sum_probs=167.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh---h---
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE---E--- 360 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~---~--- 360 (588)
.+|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+++... .
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~ 80 (366)
T PRK14294 3 KRDYYEILGVTR--DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS 80 (366)
T ss_pred CCChHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC
Confidence 379999999999 89999999999999999999999877889999999999999999999999999986421 0
Q ss_pred -----------hhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccce
Q 007833 361 -----------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVW 413 (588)
Q Consensus 361 -----------~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~ 413 (588)
+.++|.+|++. ++..+. .....+.++.+ ++.+.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~---g~~~~~-~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G-- 154 (366)
T PRK14294 81 GFSGFDDIFSSFGDIFEDFFGF---GGGRRG-RSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSG-- 154 (366)
T ss_pred CcCccccchhhhhhhHHHhhcc---CCCcCC-cccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCcc--
Confidence 01222222220 000000 00001112221 1245678899999999998
Q ss_pred eeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEE
Q 007833 414 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSF 493 (588)
Q Consensus 414 ~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V 493 (588)
.........|+.|+ |+|.+... .|++| ++++|+ .|.|.|+....+|..|+|.|.+.+.+.++|
T Consensus 155 ---~~~~~~~~~C~~C~-------G~G~~~~~-----~G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V 217 (366)
T PRK14294 155 ---CEPGTSPTTCPQCG-------GSGQVTQS-----QGFFS-IRTTCP-RCRGMGKVIVSPCKTCHGQGRVRVSKTVQV 217 (366)
T ss_pred ---ccCCCCcccCCCcC-------CeEEEEEE-----eeeEE-EEeeCC-CCCCcCeecCcCCCCCCCceEeecceeEEE
Confidence 56666678999999 99987652 16665 688999 999999999999999999999999999999
Q ss_pred EeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 494 HVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 494 ~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
+||+|+.+++ .+.+|.|.....++.|+ |++..+ .+|+.|.+-
T Consensus 218 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~G-Dl~v~i~v~~h~~F~R~ 262 (366)
T PRK14294 218 KIPAGVDTGSRLRLRGEGEAGVRGGPPG-DLYVFLTVEPHEFFERD 262 (366)
T ss_pred ecCCCCcCCcEEEEccCccCCCCCCCCC-cEEEEEEEccCCcceec
Confidence 9999999884 46666666544443344 545444 888888873
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.8e-37 Score=327.39 Aligned_cols=223 Identities=27% Similarity=0.445 Sum_probs=166.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-h---h-
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-E---L- 361 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~---~- 361 (588)
..|||+||||++ +||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+++... + .
T Consensus 3 ~~~~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~ 80 (373)
T PRK14301 3 QRDYYEVLGVSR--DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGF 80 (373)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCC
Confidence 369999999999 89999999999999999999999877889999999999999999999999999976421 0 0
Q ss_pred -------------hhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccc
Q 007833 362 -------------LDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHV 412 (588)
Q Consensus 362 -------------~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~ 412 (588)
.++|.+|++. ++..+ .....+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~---g~~~~--~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G- 154 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGF---SGGGS--RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG- 154 (373)
T ss_pred CCcccccccccchHHHHHHHhhc---cCccc--ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc-
Confidence 0111111110 00000 00011112221 2245678899999999998
Q ss_pred eeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEE
Q 007833 413 WIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPS 492 (588)
Q Consensus 413 ~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~ 492 (588)
.........|+.|+ |+|.+.... |++| .+++|+ .|.|.|.....+|+.|+|.|++.+++.++
T Consensus 155 ----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~ 216 (373)
T PRK14301 155 ----AAPGTSPETCRHCG-------GSGQVRQSQ-----GFFQ-IAVPCP-VCRGEGRVITHPCPKCKGSGIVQQTRELK 216 (373)
T ss_pred ----cCCCCCCcccCCcc-------CeeEEEEEe-----eeEE-EEEeCC-CCCceeeecCCCCCCCCCCceeccceEEE
Confidence 66666778999999 999886531 5654 488999 89999999999999999999999999999
Q ss_pred EEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 493 FHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 493 V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
|+||+|+.++ ..+.+|.|.....++ +++|++..+ .++++|.+-
T Consensus 217 V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDLiv~i~v~~h~~f~r~ 262 (373)
T PRK14301 217 VRIPAGVDTGSRLRLRGEGEPGVHGG-PPGDLYVVITVEDDKIFQRQ 262 (373)
T ss_pred EEeCCCCcCCCEEEEeccccCCCCCC-CCcCEEEEEEEEECCCceee
Confidence 9999999888 446666666544333 344555544 778888874
No 20
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-36 Score=327.08 Aligned_cols=240 Identities=27% Similarity=0.443 Sum_probs=176.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------- 359 (588)
.|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||+++...
T Consensus 3 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~ 80 (397)
T PRK14281 3 RDYYEVLGVSR--SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASG 80 (397)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccC
Confidence 69999999999 89999999999999999999999877889999999999999999999999999976421
Q ss_pred ----------hhhhhh---hhccccccCC-C-----CccccCCC-CCC-----CCCCC----------------CCCCCc
Q 007833 360 ----------ELLDYF---RRFQSASQKN-G-----RHGFFGSG-YAR-----SEADC----------------DDPFGE 398 (588)
Q Consensus 360 ----------~~~~~F---~~F~~~~~~~-g-----~~Gffggg-f~r-----sr~~d----------------E~~~~i 398 (588)
+..++| ++|+++.... + +.+.++++ ... .++.+ ++.+.+
T Consensus 81 ~~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~ 160 (397)
T PRK14281 81 GGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI 160 (397)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence 011222 2333321000 0 00001111 000 12222 124567
Q ss_pred ccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCccccc
Q 007833 399 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 478 (588)
Q Consensus 399 sr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~ 478 (588)
.+.+.|+.|+|+| .... ....|+.|+ |.|.+++ .+++++|++|+ +++|+ .|.|.|....++|..
T Consensus 161 ~r~~~C~~C~G~G-----~~~~-~~~~C~~C~-------G~G~~~~-~~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~ 224 (397)
T PRK14281 161 KKQVPCKECNGTG-----SKTG-ATETCPTCH-------GSGEVRQ-ASKTMFGQFVN-ITACP-TCGGEGRVVKDRCPA 224 (397)
T ss_pred EeeecCCCCCCcc-----cCCC-CCccCCCCC-------CCcEEEE-EEecccceEEE-EEecC-CCcceeeeeCCCCCC
Confidence 8899999999998 4443 578999999 9998876 45677788765 66999 899999999999999
Q ss_pred CCCceeccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhc
Q 007833 479 CQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAG 543 (588)
Q Consensus 479 C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~ 543 (588)
|.|.|++.+++.++|+||+|+.++ ..+.+|.|..+..++.| +||+..+ .+|++|.+ |.+|+..+
T Consensus 225 C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~-GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~ 303 (397)
T PRK14281 225 CYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAP-GDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGT 303 (397)
T ss_pred CCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCC-CcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCC
Confidence 999999999999999999999888 44666666655444334 4555544 77888876 56776655
Q ss_pred ccc
Q 007833 544 LFD 546 (588)
Q Consensus 544 ~f~ 546 (588)
-+.
T Consensus 304 ~~~ 306 (397)
T PRK14281 304 KVE 306 (397)
T ss_pred eEE
Confidence 443
No 21
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-36 Score=324.80 Aligned_cols=221 Identities=24% Similarity=0.392 Sum_probs=164.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------- 359 (588)
+|||+||||++ +||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~d~Y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~ 79 (382)
T PRK14291 3 KDYYEILGVSR--NATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQ 79 (382)
T ss_pred CCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcc
Confidence 69999999999 8999999999999999999999975 789999999999999999999999999976421
Q ss_pred ------------hhhhhhhhccccccCCCCccccCC-----CC-----CCCCCCC----------------CCCCCcccc
Q 007833 360 ------------ELLDYFRRFQSASQKNGRHGFFGS-----GY-----ARSEADC----------------DDPFGESRR 401 (588)
Q Consensus 360 ------------~~~~~F~~F~~~~~~~g~~Gffgg-----gf-----~rsr~~d----------------E~~~~isr~ 401 (588)
++.++|.+|++.. ++.+.|++ +. .+.++.+ +..+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~d~f~~~f~~f---g~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~ 156 (382)
T PRK14291 80 QGQEGFSDFGGGNIEDILEDVFDIF---GFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRY 156 (382)
T ss_pred ccccccccccCCCHHHHHHHHHHhc---cccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeee
Confidence 0112233322110 00001111 00 0112221 124567889
Q ss_pred cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCC
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 481 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G 481 (588)
+.|+.|+|+| .+.......|+.|+ |+|.+... .|+ ++.+++|+ .|.|.|. ...+|..|+|
T Consensus 157 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-----~g~-~~~~~~C~-~C~G~G~-~~~~C~~C~G 216 (382)
T PRK14291 157 VPCEACGGTG-----YDPGSGEKVCPTCG-------GSGEIYQR-----GGF-FRISQTCP-TCGGEGV-LREPCSKCNG 216 (382)
T ss_pred ccCCCCcccc-----CCCCCCCccCCCCC-------CceEEEEe-----cce-EEEEecCC-CCCCceE-EccCCCCCCC
Confidence 9999999998 66666788999999 99987663 133 45788999 9999995 6889999999
Q ss_pred ceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833 482 MRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW 535 (588)
Q Consensus 482 ~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w 535 (588)
.|++.+.+.++|+||+|+.+++ .+.+|.|..+..++ +++|++..+ .+|+.|.+
T Consensus 217 ~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~-~~GDL~v~i~~~~h~~F~r 272 (382)
T PRK14291 217 RGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGG-PPGDLYIIVKVKPHPLFER 272 (382)
T ss_pred CceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCC-CCccEEEEEEEccCCCeee
Confidence 9999999999999999998884 46666666544443 344555544 88888887
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-36 Score=321.01 Aligned_cols=220 Identities=28% Similarity=0.448 Sum_probs=166.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh------
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------ 360 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~------ 360 (588)
..|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||+++...-
T Consensus 3 ~~d~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~ 80 (371)
T PRK10767 3 KRDYYEVLGVSR--NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGG 80 (371)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCC
Confidence 479999999999 899999999999999999999998778899999999999999999999999999764210
Q ss_pred --------hhhhhhhccccccCCCCccccCCC-----CCCCCCCC----------------CCCCCcccccccccccCcc
Q 007833 361 --------LLDYFRRFQSASQKNGRHGFFGSG-----YARSEADC----------------DDPFGESRRIACKKCNNFH 411 (588)
Q Consensus 361 --------~~~~F~~F~~~~~~~g~~Gffggg-----f~rsr~~d----------------E~~~~isr~v~C~kC~GsG 411 (588)
..+.|.++++. +|+++ ..+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~f~~~f~~--------~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G 152 (371)
T PRK10767 81 GGFGGGGGFGDIFGDIFGD--------IFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG 152 (371)
T ss_pred CCCCCccccccchhhhhhh--------hccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence 00111111111 12211 01112221 2345678899999999998
Q ss_pred ceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEE
Q 007833 412 VWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKP 491 (588)
Q Consensus 412 ~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v 491 (588)
...+.....|+.|+ |+|.+.... |++| ++++|+ .|.|.|.....+|..|+|.|++.+.+.+
T Consensus 153 -----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l 213 (371)
T PRK10767 153 -----AKPGTSPKTCPTCH-------GAGQVRMQQ-----GFFT-VQQTCP-TCHGRGKIIKDPCKKCHGQGRVEKEKTL 213 (371)
T ss_pred -----cCCCCCCccCCCCC-------CeeEEEEee-----ceEE-EEEeCC-CCCCceeECCCCCCCCCCCceEeeeeeE
Confidence 56666678999999 999876632 5665 677999 9999999999999999999999999999
Q ss_pred EEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 492 SFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 492 ~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
+|+||+|+.++ ..+.+|.|.....++ +++|++..+ .+|+.|.+-
T Consensus 214 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~ 260 (371)
T PRK10767 214 SVKIPAGVDTGDRIRLSGEGEAGERGG-PAGDLYVQIHVKEHPIFERD 260 (371)
T ss_pred EEecCCCCCCCcEEEEecCccCCCCCC-CCcCEEEEEEEeeCCCEEEe
Confidence 99999999888 446666666544443 344554444 777787763
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-36 Score=325.17 Aligned_cols=227 Identities=26% Similarity=0.437 Sum_probs=165.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchh----hhhhhh---
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD----ELRREE--- 360 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~----~~~~~~--- 360 (588)
.|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+ ++...-
T Consensus 9 ~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 9 KDYYKVLGVPK--DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 69999999999 999999999999999999999998778899999999999999999999999998 543110
Q ss_pred ------------hhhhhhhccccccCCC--------CccccCCCC---CCCCCCC----------------CCCCCcccc
Q 007833 361 ------------LLDYFRRFQSASQKNG--------RHGFFGSGY---ARSEADC----------------DDPFGESRR 401 (588)
Q Consensus 361 ------------~~~~F~~F~~~~~~~g--------~~Gffgggf---~rsr~~d----------------E~~~~isr~ 401 (588)
..++|..+....+..+ +.++|+++. .+.++.+ ++.+.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 0011111100000000 011222110 1112221 234567889
Q ss_pred cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCC
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 481 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G 481 (588)
+.|+.|+|+| .+.......|+.|+ |+|++.... |++| .+++|+ .|.|.|....++|..|.|
T Consensus 167 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G 227 (389)
T PRK14295 167 APCPACSGTG-----AKNGTTPRVCPTCS-------GTGQVSRNS-----GGFS-LSEPCP-DCKGRGLIADDPCLVCKG 227 (389)
T ss_pred ccCCCCcccc-----cCCCCCCcCCCCCC-------CEeEEEEEe-----cceE-EEEecC-CCcceeEEeccCCCCCCC
Confidence 9999999998 66667788999999 999887632 3344 567999 999999999999999999
Q ss_pred ceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 482 MRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 482 ~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
.|++.+.+.++|+||+|+.+++ .+.+|.|.....+ .+++|++..+ .+|+.|.+-
T Consensus 228 ~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~ 284 (389)
T PRK14295 228 SGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERG-GPAGDLYVVVHVDPHPVFGRS 284 (389)
T ss_pred CceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCC-CCCccEEEEEEEecCCCEEEe
Confidence 9999999999999999998884 4666665544333 3344555555 788888773
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=2.7e-36 Score=319.35 Aligned_cols=217 Identities=26% Similarity=0.446 Sum_probs=169.0
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh-------
Q 007833 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL------- 361 (588)
Q Consensus 289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~------- 361 (588)
|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+++.....
T Consensus 1 d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 77 (354)
T TIGR02349 1 DYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGG 77 (354)
T ss_pred ChHHhCCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCC
Confidence 7999999999 899999999999999999999997 578999999999999999999999999997642100
Q ss_pred --------------hhhhhhccccccCCCCccccCCCC--------CCCCCCC----------------CCCCCcccccc
Q 007833 362 --------------LDYFRRFQSASQKNGRHGFFGSGY--------ARSEADC----------------DDPFGESRRIA 403 (588)
Q Consensus 362 --------------~~~F~~F~~~~~~~g~~Gffgggf--------~rsr~~d----------------E~~~~isr~v~ 403 (588)
.++|+.| |+++. .+.++.+ +..+.+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~~------------fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~ 145 (354)
T TIGR02349 78 GGFNGFDIGFFGDFGDIFGDF------------FGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKES 145 (354)
T ss_pred CCcCCccccCcCchhhhHHHH------------hccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCc
Confidence 0112222 22111 1112221 12456788999
Q ss_pred cccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCce
Q 007833 404 CKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMR 483 (588)
Q Consensus 404 C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G 483 (588)
|+.|+|+| .........|+.|+ |+|++.. .+.+++|++|+ +++|+ .|.|.|.....+|+.|+|.+
T Consensus 146 C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g 210 (354)
T TIGR02349 146 CETCHGTG-----AKPGTDPKTCPTCG-------GTGQVRR-QQGTPFGFFQQ-QQTCP-TCGGEGKIIKEPCSTCKGKG 210 (354)
T ss_pred CCCCCCCC-----CCCCCCCccCCCCC-------CeeEEEE-EEeccCCceEE-EEecC-CCCCcceecCCCCCCCCCCc
Confidence 99999998 56666688999999 9998877 45788999876 67999 99999999999999999999
Q ss_pred eccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 484 CPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 484 ~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
++.+++.++|+||+|+.++ ..+.+|.|.....+ .+++|++..+ .+|+.|.+-
T Consensus 211 ~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~v~i~v~~h~~f~r~ 265 (354)
T TIGR02349 211 RVKERKTITVKIPAGVDTGQRLRVSGKGNAGENG-GPNGDLYVVIRVKPHKIFERD 265 (354)
T ss_pred EecccceEEEEECCCCCCCCEEEEecCccCCCCC-CCCCCEEEEEEEecCcceEEe
Confidence 9999999999999999998 44666666654433 3345555555 777777653
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.9e-36 Score=317.21 Aligned_cols=224 Identities=25% Similarity=0.401 Sum_probs=167.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~------- 359 (588)
.|||+||||++ +||.+|||+|||+||+++|||+|++++ .|+++|++|++||++|+||.+|+.||+++...
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~ 80 (365)
T PRK14290 3 KDYYKILGVDR--NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSN 80 (365)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCC
Confidence 69999999999 899999999999999999999998664 79999999999999999999999999976421
Q ss_pred ----------hhhhhhhhccccccCCCCccccCC-CC---CCCCCCC----------------CCCCCcccccccccccC
Q 007833 360 ----------ELLDYFRRFQSASQKNGRHGFFGS-GY---ARSEADC----------------DDPFGESRRIACKKCNN 409 (588)
Q Consensus 360 ----------~~~~~F~~F~~~~~~~g~~Gffgg-gf---~rsr~~d----------------E~~~~isr~v~C~kC~G 409 (588)
++.++|.+|+++.. +. .++++ +. .+.++.+ ++.+.+.+.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~~~--~~-~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 81 FNWDNFTHFSDINDIFNQIFGGNF--GS-DFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred ccccccccccchhHHHHHHhcCcc--cc-ccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 11234454443210 00 00111 00 0111211 12355788999999999
Q ss_pred ccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeE-EEEEecccccCCCceeecCcccccCCCceeccce
Q 007833 410 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF-QKVDVPCAYVCANSRIYNATDWYICQGMRCPANT 488 (588)
Q Consensus 410 sG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~-qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t 488 (588)
+| ... .....|+.|+ |+|+++... . +|++ |+.+++|+ .|.|.|+....+|..|+|.|++.+.
T Consensus 158 ~g-----~~~-~~~~~C~~C~-------G~G~~~~~~-~--~g~~~~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 220 (365)
T PRK14290 158 TG-----AKN-GKLITCPTCH-------GTGQQRIVR-G--QGFFRMVTVTTCR-TCGGRGRIPEEKCPRCNGTGTVVVN 220 (365)
T ss_pred cc-----CCC-CCCccCCCCC-------CcCEEEEEe-c--cCeEEEEEEEeCC-CCCCceeEccCCCCCCCCceeEEEe
Confidence 98 443 3678999999 999887644 2 3444 56678999 9999999999999999999999999
Q ss_pred eEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 489 HKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 489 ~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
+.++|+||+|+.++ ..+.+|.|.. .+ .+++|++..+ .+|++|.+.
T Consensus 221 ~~~~V~Ip~G~~~G~~i~~~g~G~~--~~-~~~GDL~v~v~v~~h~~F~R~ 268 (365)
T PRK14290 221 EDISVKIPKGATDNLRLRVKGKGQS--YG-GRTGDLYVVLRVNNDPNIQRI 268 (365)
T ss_pred eEEEEEECCCCCCCcEEEEccccCC--CC-CCCCCEEEEEEEcCCCCEEEe
Confidence 99999999999988 4466666653 23 3455555555 888888874
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-36 Score=319.21 Aligned_cols=237 Identities=25% Similarity=0.397 Sum_probs=175.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 359 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~------- 359 (588)
..|||++|||++ +||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+++...
T Consensus 4 ~~~~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 4 KRDYYEVLGVSK--TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred cCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 479999999999 99999999999999999999999887889999999999999999999999999976421
Q ss_pred --------hhhhhhhhc---cccccCCCCc--cccCCCC---CCCCCCC----------------CCCCCcccccccccc
Q 007833 360 --------ELLDYFRRF---QSASQKNGRH--GFFGSGY---ARSEADC----------------DDPFGESRRIACKKC 407 (588)
Q Consensus 360 --------~~~~~F~~F---~~~~~~~g~~--Gffgggf---~rsr~~d----------------E~~~~isr~v~C~kC 407 (588)
++.++|.+| ++... ++.. +.++++. .+.++.+ +..+.+.+.+.|+.|
T Consensus 82 ~~~~~~~~~~~~~f~~f~~~fg~~~-gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 160 (386)
T PRK14289 82 GGFSGEGMSMEDIFSMFGDIFGGHG-GGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC 160 (386)
T ss_pred CCCCCCCcChhhhhHHhhhhhcccc-cCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence 011222222 11100 0000 0011010 0112221 124556889999999
Q ss_pred cCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccc
Q 007833 408 NNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPAN 487 (588)
Q Consensus 408 ~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~ 487 (588)
+|+| .........|+.|+ |.|.+.. .+++++|++|. +.+|+ .|.|.|+.....|..|.|.|++.+
T Consensus 161 ~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~ 225 (386)
T PRK14289 161 HGTG-----AEGNNGSETCPTCK-------GSGSVTR-VQNTILGTMQT-QSTCP-TCNGEGKIIKKKCKKCGGEGIVYG 225 (386)
T ss_pred CCCC-----CCCCCCCCcCCCCc-------CeEEEEE-EEecccceEEE-EEecC-CCCccccccCcCCCCCCCCcEEee
Confidence 9998 66677789999999 9998877 45677888864 88999 899999999999999999999999
Q ss_pred eeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHHHh
Q 007833 488 THKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAVQA 542 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~~~ 542 (588)
++.++|+||+|+.++ ..+.+|.|.....++.| +|+++.+ .+++.|..-.++|..
T Consensus 226 ~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~-GDL~v~v~v~~~~~f~r~g~DL~~ 282 (386)
T PRK14289 226 EEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVN-GDLLVVIEEEPHPELIRDENDLIY 282 (386)
T ss_pred eEEEEEEeCCCCCCCCEEEEeccccCCCCCCCC-ccEEEEEEEecCCcccccccceeE
Confidence 999999999999998 55777777654333334 4544444 666667765555443
No 27
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-36 Score=310.40 Aligned_cols=215 Identities=28% Similarity=0.422 Sum_probs=163.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh-----
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL----- 361 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~----- 361 (588)
.+.||+||||++ +||++|||||||+||++||||||++ |.|+|++|++||||||||+||+.||+++...-.
T Consensus 3 ~~~~y~il~v~~--~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~ 77 (337)
T KOG0712|consen 3 NTKLYDILGVSP--DASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG 77 (337)
T ss_pred ccccceeeccCC--CcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCC
Confidence 478999999999 9999999999999999999999964 899999999999999999999999999853210
Q ss_pred --hhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeeccCcccc
Q 007833 362 --LDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASA 423 (588)
Q Consensus 362 --~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k~~~~a 423 (588)
...|++|++ .+ +.++.++.++.+ ..++.++++.+|++|+|.| .. +..+
T Consensus 78 ~g~~~f~~~F~----~g----~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsG-----gk-sg~~ 143 (337)
T KOG0712|consen 78 GGFGGFSQFFG----FG----GNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSG-----GK-SGSA 143 (337)
T ss_pred CCCccHHHhcc----CC----CcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCC-----CC-CCCC
Confidence 011333332 00 001112222322 2367789999999999997 44 3455
Q ss_pred cccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee--cCcccccCCCceeccceeEEEEEeCCcccC
Q 007833 424 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--NATDWYICQGMRCPANTHKPSFHVNTSVTS 501 (588)
Q Consensus 424 r~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~--~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d 501 (588)
..|+.|+ |.|.... .++++|||.|+++.+|. .|.|+|.. ..+.|+.|+|.+++...+.++|+|++|+.+
T Consensus 144 ~~C~~C~-------GsGv~~~-~~~~gPg~~qs~q~~C~-~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~ 214 (337)
T KOG0712|consen 144 PKCTTCR-------GSGVQTR-TRQMGPGMVQSPQLVCD-SCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPH 214 (337)
T ss_pred CCCCCCC-------CCCceeE-EEeccccccccceeEec-cCCCccccccccccCcccccchhhhhhheeeccccCCCcc
Confidence 6899999 9996665 67899999999999999 99999865 899999999999999999999999999998
Q ss_pred CCCcc-ccCCCCCCCCCCCCCccccCCChhH
Q 007833 502 KHNTS-KGTSSGQRGGRMPPPNLEETMTEDE 531 (588)
Q Consensus 502 ~~~r~-~g~g~~~~gg~~p~~~~~~~~~e~e 531 (588)
++... .+++....+.- +.|.+..+++.+
T Consensus 215 ~~ki~f~geadea~g~~--pgD~vl~i~~k~ 243 (337)
T KOG0712|consen 215 GQKITFKGEADEAPGTK--PGDVVLLIDQKE 243 (337)
T ss_pred cceeeeeeeeeecCCCc--CccEEEEecccc
Confidence 86533 23333333332 445555554444
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-35 Score=313.68 Aligned_cols=234 Identities=25% Similarity=0.354 Sum_probs=173.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------- 359 (588)
.|||+||||++ +||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||.++...
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~ 79 (374)
T PRK14293 3 ADYYEILGVSR--DADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFP 79 (374)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcC
Confidence 69999999999 8999999999999999999999974 789999999999999999999999999976421
Q ss_pred ------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeec
Q 007833 360 ------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETK 417 (588)
Q Consensus 360 ------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~ 417 (588)
++.++|.+|++.....+..+.......+.++.+ +..+.+.+.+.|..|+|+| .
T Consensus 80 ~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G-----~ 154 (374)
T PRK14293 80 DMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSG-----A 154 (374)
T ss_pred CcccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcC-----C
Confidence 012445555432100000000000001112211 1245678899999999998 6
Q ss_pred cCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCC
Q 007833 418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNT 497 (588)
Q Consensus 418 k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~ 497 (588)
+.......|+.|+ |+|++... +++++|++|+ +.+|+ .|.|.|..+..+|..|.|.|++.+++.++|+||+
T Consensus 155 ~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp 224 (374)
T PRK14293 155 KPGTGPTTCSTCG-------GAGQVRRA-TRTPFGSFTQ-VSECP-TCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA 224 (374)
T ss_pred CCCCCCeeCCCCC-------CcceEEEE-EecCcceEEE-EeeCC-CCCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence 6666778999999 99988774 4677888875 58999 9999999999999999999999999999999999
Q ss_pred cccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHH
Q 007833 498 SVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAV 540 (588)
Q Consensus 498 Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~ 540 (588)
|+.++ ..+.+|.|.....++.| +|++..+ .+++.|.+-+++|
T Consensus 225 G~~~G~~i~l~g~G~~~~~~~~~-GDL~v~v~v~~~~~f~r~g~DL 269 (374)
T PRK14293 225 GVDTGTRLRVSGEGDAGLRGGPP-GDLYVYLFVKNDPEFRRDGINI 269 (374)
T ss_pred CCCCCCEEEEccCccCCCCCCCC-cCEEEEEEEeCCCccChhhhce
Confidence 99988 44666666544333333 4555544 6666777765444
No 29
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-35 Score=313.33 Aligned_cols=227 Identities=24% Similarity=0.385 Sum_probs=172.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhh-----
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL----- 362 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~----- 362 (588)
+|||+||||++ +||.+|||+|||+||++||||+++ ++.++++|++|++||++|+|+.+|+.||+++... +.
T Consensus 3 ~~~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~-~~~~~~~ 78 (372)
T PRK14300 3 QDYYQILGVSK--TASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA-FQNQQSR 78 (372)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc-ccccccc
Confidence 69999999999 899999999999999999999997 4779999999999999999999999999976421 00
Q ss_pred --------------hhhhhccccccCCCCccccCCC--CCC----CCCCC----------------CCCCCccccccccc
Q 007833 363 --------------DYFRRFQSASQKNGRHGFFGSG--YAR----SEADC----------------DDPFGESRRIACKK 406 (588)
Q Consensus 363 --------------~~F~~F~~~~~~~g~~Gffggg--f~r----sr~~d----------------E~~~~isr~v~C~k 406 (588)
++|.+|++. +|+++ ..+ .++.+ ++.+.+.+.+.|+.
T Consensus 79 ~~~g~~~~~~~~~~~~f~~~f~~--------~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~ 150 (372)
T PRK14300 79 GGGGNHGGFHPDINDIFGDFFSD--------FMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDT 150 (372)
T ss_pred CCCCCCCccccchhhhHHHHHHh--------hcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCC
Confidence 112222111 11111 000 12221 22456788999999
Q ss_pred ccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecc
Q 007833 407 CNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPA 486 (588)
Q Consensus 407 C~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~ 486 (588)
|+|+| ...+.....|+.|+ |+|.+... +|++| ++.+|+ .|.|.|.....+|..|.|.|++.
T Consensus 151 C~G~g-----~~~~~~~~~C~~C~-------G~G~~~~~-----~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~ 211 (372)
T PRK14300 151 CHGSG-----SEKGETVTTCDACS-------GVGATRMQ-----QGFFT-IEQACH-KCQGNGQIIKNPCKKCHGMGRYH 211 (372)
T ss_pred CCCcc-----cCCCCCCccCCCcc-------CeEEEEEe-----eceEE-EEEeCC-CCCccceEeCCCCCCCCCceEEE
Confidence 99998 66666788999999 99987652 26766 777999 99999999999999999999999
Q ss_pred ceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhcccc
Q 007833 487 NTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAGLFD 546 (588)
Q Consensus 487 ~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~~f~ 546 (588)
+++.++|+||+|+.++ ..+.+|.|..+..++.|+ |++..+ .+|++|.+ |.+|+..+-+.
T Consensus 212 ~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~G-DL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~ 285 (372)
T PRK14300 212 KQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSG-DLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIE 285 (372)
T ss_pred eeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCC-CEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEE
Confidence 9999999999999888 446666666544443344 444444 88888887 67777666543
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-35 Score=312.33 Aligned_cols=239 Identities=25% Similarity=0.357 Sum_probs=173.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-hh----
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-EL---- 361 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~~---- 361 (588)
.+|||+||||++ +||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+++... +.
T Consensus 4 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~ 80 (378)
T PRK14283 4 KRDYYEVLGVDR--NADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE 80 (378)
T ss_pred cCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence 479999999999 9999999999999999999999974 889999999999999999999999999986421 00
Q ss_pred --------hhhhhhccccccCCCCccc-cCCCC--CCCCCCC----------------CCCCCcccccccccccCcccee
Q 007833 362 --------LDYFRRFQSASQKNGRHGF-FGSGY--ARSEADC----------------DDPFGESRRIACKKCNNFHVWI 414 (588)
Q Consensus 362 --------~~~F~~F~~~~~~~g~~Gf-fgggf--~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~ 414 (588)
.++|..|.+.. .+.+..+ |+++. .+.++.+ ...+.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G--- 156 (378)
T PRK14283 81 DIFNNINFEDIFQGFGFGI-GNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR--- 156 (378)
T ss_pred ccccccCccccccccccch-hhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc---
Confidence 00011110000 0000001 22111 1112221 1245678899999999998
Q ss_pred eeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEE
Q 007833 415 ETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFH 494 (588)
Q Consensus 415 ~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~ 494 (588)
.........|+.|+ |+|++.+. +.+++|++|+ +.+|+ .|.|.|.....+|..|+|.|++.+.+.++|+
T Consensus 157 --~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~ 224 (378)
T PRK14283 157 --AEPGSEVKTCPTCG-------GTGQVKQV-RNTILGQMMN-VTTCP-DCQGEGKIVEKPCSNCHGKGVVRETKTISVK 224 (378)
T ss_pred --cCCCCCCccCCCcC-------CccEEEEE-EeccCceEEE-EEECC-CCCccceecCCCCCCCCCceeeccceeEEEE
Confidence 56666788999999 99988874 4667888764 56999 9999999999999999999999999999999
Q ss_pred eCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhccc
Q 007833 495 VNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAGLF 545 (588)
Q Consensus 495 Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~~f 545 (588)
||+|+.++ ..+.+|.|.....++.+ +|+++.+ .+++.|.+ |.+|+..+-+
T Consensus 225 IppG~~~G~~i~l~g~G~~~~~~~~~-GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~ 289 (378)
T PRK14283 225 IPAGVETGSRLRVSGEGEMGDRGGEP-GDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTV 289 (378)
T ss_pred ECCCCCCCcEEEEeccccCCCCCCCC-ccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeE
Confidence 99999888 44666666554433333 4555544 66777765 4566666554
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-35 Score=309.99 Aligned_cols=230 Identities=23% Similarity=0.395 Sum_probs=172.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------- 359 (588)
.|||+||||++ +||.+|||+|||+||+++|||+|+ ++.|+++|++|++||++|+||.+|+.||.++...
T Consensus 2 ~d~y~~Lgv~~--~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~ 78 (371)
T PRK14292 2 MDYYELLGVSR--TASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGD 78 (371)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCc
Confidence 58999999999 899999999999999999999997 5789999999999999999999999999976421
Q ss_pred -------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeee
Q 007833 360 -------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 416 (588)
Q Consensus 360 -------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t 416 (588)
+..++|.+|++.....+. .+ ...+.++.+ ...+.+.+.+.|+.|+|+|
T Consensus 79 ~~~~~~~d~~d~f~~~fg~~~~~~~---~~-~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G----- 149 (371)
T PRK14292 79 PFGGMGFDPMDIFEQLFGGAGFGGG---RG-RRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSR----- 149 (371)
T ss_pred ccCccCCChHHHHHHhhCCCCcCCC---CC-cccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccc-----
Confidence 011344444332100000 00 011112221 1245578889999999998
Q ss_pred ccCcc-cccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEe
Q 007833 417 KKSKA-SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHV 495 (588)
Q Consensus 417 ~k~~~-~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~V 495 (588)
..... ....|+.|+ |+|.+.... +..+|++|+ +++|+ .|.|.|......|..|.|.|++.+.+.++|+|
T Consensus 150 ~~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 219 (371)
T PRK14292 150 TEPGGKPPKTCPTCR-------GAGAVRAQA-RTIFGVVET-QQPCP-TCRGEGQIITDPCTVCRGRGRTLKAETVKVKL 219 (371)
T ss_pred cCCCCCCCccCCCCC-------CccEEEEEE-eccCceEEE-eeecC-CCcccceecCCCCCCCCCceEEeecceEEEEE
Confidence 44333 368899999 999887754 455688765 77999 89999999999999999999999999999999
Q ss_pred CCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHHHh
Q 007833 496 NTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAVQA 542 (588)
Q Consensus 496 p~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~~~ 542 (588)
|+|+.++ ..+.+|.|..+.++ + +|+++.+ .+|+.|.+-.++|..
T Consensus 220 p~G~~~G~~i~~~G~G~~~~~~--~-GDL~v~i~v~~h~~f~r~g~dL~~ 266 (371)
T PRK14292 220 PRGIDEGYRIRVAGMGNEGPGG--N-GDLYVHIEMEPHPELRREQEHLIY 266 (371)
T ss_pred CCCCCCCcEEEEecCcCCCCCC--C-CCEEEEEEEecCCccccchhceeE
Confidence 9999998 55777777664433 2 5555555 778888886655443
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-26 Score=239.65 Aligned_cols=201 Identities=24% Similarity=0.393 Sum_probs=150.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh------hh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------EL 361 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~------~~ 361 (588)
.|||+||||++ +|+..|||+||++||++||||.|.+ ++|+++|++|.+|||+|+|++||+.||..+... +.
T Consensus 43 ~d~Y~vLgv~~--~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~ 119 (288)
T KOG0715|consen 43 EDYYKVLGVSR--NATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNP 119 (288)
T ss_pred cchhhhhCcCC--CCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCc
Confidence 48999999999 9999999999999999999999986 699999999999999999999999999987643 12
Q ss_pred hhhhhhcccc-ccCC--CCccccC--CCCCC-CCCCCCCCCCcccccccccccCccceeeeccCcccccccccccccccc
Q 007833 362 LDYFRRFQSA-SQKN--GRHGFFG--SGYAR-SEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA 435 (588)
Q Consensus 362 ~~~F~~F~~~-~~~~--g~~Gffg--ggf~r-sr~~dE~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~a 435 (588)
.+.|..++.. .... +....+. ..+.. .++. ...++++....|.+|.|.+ ..+......|..|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~-~~~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~~~----- 188 (288)
T KOG0715|consen 120 FDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGS-KKRISFNVLSDCETCFGSG-----AEEGAKRESCKTCS----- 188 (288)
T ss_pred cchHHHhhcccccccccCcccccccccCHHHHhhcc-ccceEEEeecccccccCcC-----cccccccccchhhh-----
Confidence 3444444333 0000 0000000 00000 1111 3456677888999999998 67777889999999
Q ss_pred cCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCcccCC-CCccccCCC
Q 007833 436 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSS 511 (588)
Q Consensus 436 k~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~ 511 (588)
|.|.+..... ..+.+ + +|. .|.+.+.+..+.|..|.|.+.+..++.+.+.+|+|+.++ ..+..+.+.
T Consensus 189 --~~~~~~~~~~-~~f~~----~-~~~-~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~ 256 (288)
T KOG0715|consen 189 --GRGLVSNPKE-DPFIL----Y-TCS-YCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGN 256 (288)
T ss_pred --Cccccccccc-CCcce----e-ecc-cccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCc
Confidence 9996655332 22322 2 799 799999888888999999999999999999999999877 556655444
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-26 Score=237.99 Aligned_cols=74 Identities=42% Similarity=0.587 Sum_probs=69.9
Q ss_pred HHhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 282 VRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 282 ~ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..++..+|||+||||++ +|+..|||+||||||++|||||||+||.|.+.|++|+.||||||||+||+.||.++.
T Consensus 10 ~~v~~~rDfYelLgV~k--~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 10 EAVLAGRDFYELLGVPK--NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhhhcCCCHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 34556689999999999 999999999999999999999999999999999999999999999999999999983
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.81 E-value=7.2e-20 Score=190.93 Aligned_cols=67 Identities=33% Similarity=0.520 Sum_probs=63.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
.+|||+||||++ ++|.+|||+|||+||+++|||+|+ ++.|+++|++|++||++|+||.+|+.||.++
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKP--TDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 369999999999 899999999999999999999997 4789999999999999999999999999976
No 35
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-18 Score=175.62 Aligned_cols=68 Identities=40% Similarity=0.637 Sum_probs=65.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|+|+|||+++ +|+.++|||+||+|+++||||+++++|++.++|++||+||++|+||.||..||+++.
T Consensus 31 ~~LYdVLgl~k--~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 31 LDLYDVLGLPK--TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hHHHHHhCCCc--ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 68999999999 999999999999999999999999999999999999999999999999999999863
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.7e-18 Score=179.13 Aligned_cols=70 Identities=46% Similarity=0.680 Sum_probs=67.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~ 358 (588)
..|||++||+++ +++.+|||||||++|++|||||||+||+|.++|+.|.+||+||+|+.+|+.||+.+..
T Consensus 4 ~~dyY~lLgi~~--~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISE--DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 579999999999 9999999999999999999999999999999999999999999999999999998754
No 37
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=6.2e-18 Score=175.37 Aligned_cols=68 Identities=37% Similarity=0.541 Sum_probs=64.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||+||||++ +||.+|||+|||+||+++|||+|+ ++.|+++|++|++||++|+||++|+.||+++.
T Consensus 3 ~~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPK--NASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 379999999999 899999999999999999999997 58899999999999999999999999999764
No 38
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=99.69 E-value=7.5e-18 Score=146.29 Aligned_cols=90 Identities=41% Similarity=0.852 Sum_probs=82.1
Q ss_pred cccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccc
Q 007833 398 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477 (588)
Q Consensus 398 isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~ 477 (588)
..+.+.|++|+|.|+|+.|.++...+++|++|+++||||||++|+|.+.. |+.. +.|.|.+++++|+++|+
T Consensus 2 a~n~i~C~~C~~~H~r~~t~r~~~~AR~C~~C~~~H~Ak~gDiWaE~~~~----G~~~-----~yy~c~~g~VyDiTeWA 72 (94)
T PF14901_consen 2 ASNTIRCDKCGGKHKRIETDRPPSAARYCQDCKIRHPAKEGDIWAESSSL----GFLW-----TYYACMDGKVYDITEWA 72 (94)
T ss_pred ccceeechhhCCeeeeEEecCchhhhHhHHHhhhhcccccCCeEEEeccc----ceEE-----EEEEEcCceEEehhhhh
Confidence 46789999999999999999999999999999999999999999998643 4432 56799999999999999
Q ss_pred cCCCcee--ccceeEEEEEeC
Q 007833 478 ICQGMRC--PANTHKPSFHVN 496 (588)
Q Consensus 478 ~C~G~G~--~~~t~~v~V~Vp 496 (588)
+|+|+.+ .+++|.|+++|.
T Consensus 73 ~Cq~~~~~l~~ntH~vqyri~ 93 (94)
T PF14901_consen 73 TCQGMHLHLRPNTHRVQYRIN 93 (94)
T ss_pred hccccccccCCCcccceeeec
Confidence 9999999 999999999986
No 39
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.68 E-value=3.3e-17 Score=132.20 Aligned_cols=63 Identities=40% Similarity=0.713 Sum_probs=59.7
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhhhcchhhhch
Q 007833 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYD 353 (588)
Q Consensus 289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-~A~e~Fk~I~~AYevLsD~~kR~~YD 353 (588)
|||+||||++ +++.+|||++|+++++++|||+++.++ .+++.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~--~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPP--DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTT--TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCC--CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999 899999999999999999999997654 58899999999999999999999998
No 40
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.8e-17 Score=174.32 Aligned_cols=68 Identities=41% Similarity=0.600 Sum_probs=63.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
.+.||+||||.+ +|+..|||++||+|||+|||||||+. .+|++.|+.|+.||+|||||+.|+.||.+.
T Consensus 7 ~~c~YE~L~v~~--~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 7 KRCYYEVLGVER--DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred hhHHHHHhcccc--cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 368999999999 99999999999999999999999865 679999999999999999999999999874
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.9e-16 Score=169.11 Aligned_cols=69 Identities=36% Similarity=0.566 Sum_probs=63.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~---p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||.+|+|++ +||.+|||+||||+++.|||||..+. ..|++.|++|++||||||||++|+.||.++.
T Consensus 8 e~e~Ya~LNlpk--dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 8 EIELYALLNLPK--DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred hhhHHHHhCCCc--ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 358999999999 99999999999999999999999743 3489999999999999999999999998764
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.61 E-value=4.1e-16 Score=178.58 Aligned_cols=70 Identities=31% Similarity=0.385 Sum_probs=65.1
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833 286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358 (588)
Q Consensus 286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~ 358 (588)
..++||+||||++ +||.+|||+|||+||++|||||+++ +.|.++|++|++||+|||||.+|+.||++|..
T Consensus 571 ~d~dYYdILGVs~--dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 571 PDTLFYDILGVGV--NADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCChHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 3579999999999 9999999999999999999999986 47889999999999999999999999998753
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8e-16 Score=152.46 Aligned_cols=69 Identities=38% Similarity=0.612 Sum_probs=63.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG--NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~--~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.+|+|+||||.+ +|+..+||||||+|||++|||+++. ..+|+++|+.|+.||+||+|.++|+.||+.+.
T Consensus 13 ~~d~YevLGVer--~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 13 KKDLYEVLGVER--DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred ccCHHHHhhhcc--cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 469999999999 9999999999999999999999953 35689999999999999999999999999764
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.58 E-value=2.4e-15 Score=119.33 Aligned_cols=59 Identities=49% Similarity=0.756 Sum_probs=54.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHhhhcch
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-NEKAVEAFKKLQNAYEVLFDSFK 348 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~-~p~A~e~Fk~I~~AYevLsD~~k 348 (588)
.|||+||||++ +++.++||++||++++++|||++++ .+.+++.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~--~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999 8999999999999999999999975 57899999999999999999853
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-15 Score=143.98 Aligned_cols=67 Identities=42% Similarity=0.681 Sum_probs=63.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-AVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
..|||+||||++ +|+.+|||+|||++|+++|||+++.++. |++.|+.|++||++|+|+.+|+.||..
T Consensus 5 ~~~~y~iLgv~~--~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPP--NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 469999999999 9999999999999999999999998775 999999999999999999999999985
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.55 E-value=8.4e-15 Score=114.10 Aligned_cols=55 Identities=44% Similarity=0.680 Sum_probs=51.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 007833 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 345 (588)
Q Consensus 289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD 345 (588)
|||++|||++ +++.++||++||++++++|||++++.+.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~--~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999 899999999999999999999997546789999999999999986
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2e-14 Score=141.47 Aligned_cols=74 Identities=28% Similarity=0.414 Sum_probs=66.2
Q ss_pred HhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833 283 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358 (588)
Q Consensus 283 ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~ 358 (588)
+-....|+||||||+| ++|+.|||||||+|++++||||++...+.++.|..|.+||+.|+|+..|+.|.+++..
T Consensus 94 ~~~~~fDPyEILGl~p--gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDP--GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred HHhhcCCcHHhhCCCC--CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 3344579999999999 8999999999999999999999986456778899999999999999999999998753
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.47 E-value=5.2e-14 Score=146.64 Aligned_cols=68 Identities=37% Similarity=0.508 Sum_probs=62.9
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p---~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
..+|||+||||.+ +|+..||.|||||+|.+||||-..+.+ .|+.+|-.|..|-|||+||+||+.||..
T Consensus 392 ~kRDYYKILGVkR--nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKR--NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhcc--cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 3479999999999 999999999999999999999987643 4899999999999999999999999985
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.47 E-value=3.4e-14 Score=134.66 Aligned_cols=65 Identities=26% Similarity=0.431 Sum_probs=59.6
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833 288 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~a--s~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~ 358 (588)
..+|+||||++ +| |.+|||+|||++|+++||||+++ +++|++|++||++|+|+.+|..||.++..
T Consensus 5 ~~l~~vLGl~~--~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPR--SAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 46899999999 89 99999999999999999999853 47999999999999999999999998743
No 50
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.47 E-value=4.4e-14 Score=159.14 Aligned_cols=67 Identities=34% Similarity=0.540 Sum_probs=63.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ +|+.++||+|||+|++++|||++++ +.+.++|++|++||++|+||.+|+.||.++.
T Consensus 2 ~DYYeVLGVs~--dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDR--DADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 59999999999 8999999999999999999999975 7889999999999999999999999999764
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=3.5e-13 Score=130.16 Aligned_cols=70 Identities=27% Similarity=0.442 Sum_probs=61.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||++|||++..+++..+||++||++++++|||+....+. |.+.|+.||+||++|+||.+|+.|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 38999999999556889999999999999999999865432 56789999999999999999999996543
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=8e-13 Score=127.16 Aligned_cols=70 Identities=31% Similarity=0.459 Sum_probs=60.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~---A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||++|||++..+++.++||++||++++++|||++..... +.+.+..|++||++|+||.+|+.|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 58999999999545899999999999999999999864222 33568899999999999999999987653
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=9e-13 Score=127.93 Aligned_cols=70 Identities=33% Similarity=0.468 Sum_probs=60.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHH-----HHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKA-----VEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A-----~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||++|||++..+++..+||++||++++++|||++...+.+ .+.++.||+||++|+||.+|..|+..+.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 699999999996568899999999999999999998755443 3456899999999999999999997553
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.9e-12 Score=125.33 Aligned_cols=71 Identities=28% Similarity=0.363 Sum_probs=63.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||++||+++.-+.+.++||++||++++++|||++...+. +.+.|..||+||++|+||.+|+.|+-.+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 469999999999666889999999999999999999865443 56789999999999999999999997654
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-12 Score=139.18 Aligned_cols=68 Identities=41% Similarity=0.689 Sum_probs=64.2
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
+.+|||.|||+.+ +++.+|||||||++|+.+|||++..+ .+++.+|+++.+||.+|+||.+|..||..
T Consensus 371 kRkd~ykilGi~~--~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISR--NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhh--hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 3579999999999 89999999999999999999999887 77999999999999999999999999975
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-12 Score=130.63 Aligned_cols=69 Identities=43% Similarity=0.598 Sum_probs=62.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||+||+|.+ +|+.+|||+|||++|+++|||||+.+ ..|+++|+++.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~--~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIAR--SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccc--cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 369999999998 88888999999999999999999764 2466689999999999999999999999875
No 57
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.6e-12 Score=123.35 Aligned_cols=88 Identities=36% Similarity=0.518 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCcHHHHHHhhcCC------CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHH
Q 007833 265 VPSTSGDDSEMTSEDEVVRLLNCT------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQ 337 (588)
Q Consensus 265 ~~s~~~~~s~~ts~~e~~ril~~~------d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~ 337 (588)
..++...++.+++.++++|++.+. |+|+||.|.| ..+.++||+.||+|++.+|||||++| +.|..+|..|.
T Consensus 24 vk~~ek~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdp--ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivk 101 (250)
T KOG1150|consen 24 VKSIEKRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDP--EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVK 101 (250)
T ss_pred HHhhhhhhcccCcHHHHHHHhcCCccccccChHHHHhcCC--CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHH
Confidence 456677889999999999999954 8999999999 89999999999999999999999998 78999999999
Q ss_pred HHHHHhhhcchhhhchh
Q 007833 338 NAYEVLFDSFKRKAYDD 354 (588)
Q Consensus 338 ~AYevLsD~~kR~~YD~ 354 (588)
+||..|-|+.-|+.-+.
T Consensus 102 KA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 102 KAYKLLENDKIRKRCLD 118 (250)
T ss_pred HHHHHHhCHHHHHHHHH
Confidence 99999999986655443
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.1e-12 Score=129.70 Aligned_cols=69 Identities=33% Similarity=0.553 Sum_probs=63.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~ 359 (588)
.|.|+||||.+ +++..||+||||+||+++|||++++ +++.+.|+.|..|||+|.|.+.|..||-.+..+
T Consensus 33 enCYdVLgV~R--ea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 33 ENCYDVLGVAR--EANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred hhHHHHhhhhh--hccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 59999999999 8899999999999999999999985 788899999999999999999999999766443
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.15 E-value=2.7e-11 Score=109.99 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=46.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLs 344 (588)
.++|+||||++ ++|.+|||++||+|++++|||++. ..+.|++|++|||+|.
T Consensus 65 ~eAy~ILGv~~--~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISP--TASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 58999999999 899999999999999999999963 3578999999999995
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.14 E-value=4.9e-11 Score=122.81 Aligned_cols=56 Identities=39% Similarity=0.528 Sum_probs=50.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---C----hHHHHHHHHHHHHHHHhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N----EKAVEAFKKLQNAYEVLFD 345 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~---~----p~A~e~Fk~I~~AYevLsD 345 (588)
.|+|+||||++ ++|.+|||+|||+|+++||||++.. + +.|+++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~--~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSE--SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999 8999999999999999999999742 1 3588999999999999985
No 61
>PHA02624 large T antigen; Provisional
Probab=99.08 E-value=8e-11 Score=131.76 Aligned_cols=59 Identities=25% Similarity=0.446 Sum_probs=55.3
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhc
Q 007833 288 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY 352 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~a--s~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~Y 352 (588)
.++|++|||++ +| +.+|||+|||++|+++||||+. ++++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~--~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPM--AAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 58999999999 89 9999999999999999999974 258999999999999999999998
No 62
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.05 E-value=2.3e-10 Score=94.10 Aligned_cols=65 Identities=25% Similarity=0.515 Sum_probs=50.1
Q ss_pred cccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec-CcccccCCCc
Q 007833 404 CKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN-ATDWYICQGM 482 (588)
Q Consensus 404 C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~-~~~C~~C~G~ 482 (588)
|+.|+|+| .+++..+..|+.|+ |+|++....+ . ++++++++++|+ .|.|.|.++ .++|+.|+|.
T Consensus 1 C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~~-~-~~~~~~~~~~C~-~C~G~G~~i~~~~C~~C~G~ 65 (66)
T PF00684_consen 1 CPKCNGTG-----AKPGKKPKTCPQCN-------GSGQVTRRQQ-T-PGGVFQMQQTCP-KCGGTGKIIEKDPCKTCKGS 65 (66)
T ss_dssp -CCCTTTS-----B-STTT-EE-TTSS-------SSSEEEEEEE-S-SSTTEEEEEE-T-TTSSSSEE-TSSB-SSSTTS
T ss_pred CCcCCCcc-----cCCCCCCcCCcCCC-------CeeEEEEEEe-C-CCeEEEEEEECC-CCcceeeEECCCCCCCCCCc
Confidence 89999998 77888899999999 9999988655 4 445567889999 899999887 9999999997
Q ss_pred e
Q 007833 483 R 483 (588)
Q Consensus 483 G 483 (588)
|
T Consensus 66 g 66 (66)
T PF00684_consen 66 G 66 (66)
T ss_dssp S
T ss_pred C
Confidence 5
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.91 E-value=8.4e-10 Score=118.27 Aligned_cols=69 Identities=29% Similarity=0.447 Sum_probs=62.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---C--hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N--EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~---~--p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
-.|+|||||++. +++..|||++||+|+.|+||||.+. + .+-+|.++.|++||+.|+|+..|+.|-.++.
T Consensus 97 ~fDPyEILGI~~--~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 97 GFDPYEILGIDQ--DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CCChHHhhcccC--CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 469999999999 8999999999999999999999864 1 4578999999999999999999999988754
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.85 E-value=3.9e-09 Score=102.42 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-----~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||++||+++.-+.+..++++.||+|.+++|||+....+ .|.+.-..||+||.+|.||-+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 6899999999965699999999999999999999986543 245678899999999999999999976543
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.82 E-value=4.9e-09 Score=100.20 Aligned_cols=57 Identities=30% Similarity=0.402 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 301 NVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 301 ~as~~eIKkAYRklalk~HPDkn~~~p-----~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
+.+..+|+++||++++++|||+.+... .+.+.|+.||+||++|+||.+|+.|+..+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 467899999999999999999965432 266889999999999999999999998764
No 66
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.9e-09 Score=104.60 Aligned_cols=69 Identities=38% Similarity=0.486 Sum_probs=60.8
Q ss_pred CCCcccccCcccCC-CCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 287 CTDHYSALGLSRFE-NVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~-~as~~eIKkAYRklalk~HPDkn~--~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
..|+|.+|||+.+. .+++.+|+++.++...+||||+.. ++.+..+.|+.|+.||+||+|+.+|.+||.-
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 46999999999753 378899999999999999999972 3456789999999999999999999999974
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.2e-06 Score=101.45 Aligned_cols=55 Identities=29% Similarity=0.414 Sum_probs=46.5
Q ss_pred CCcccccCcccCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 007833 288 TDHYSALGLSRFEN--VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 345 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~--as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD 345 (588)
.+-|+||.++-... .+.+.|||+|+|||.+|||||| |+..|+|.++|+|||.|+.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHH
Confidence 47899999986321 2347899999999999999999 5678999999999999983
No 68
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.08 E-value=4.5e-06 Score=75.66 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=48.0
Q ss_pred ccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCccccc
Q 007833 399 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 478 (588)
Q Consensus 399 sr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~ 478 (588)
...+.|..|+|+| . +.|+.|+ |+|++.... . + .++.+++|+ .|.|.|.. .|..
T Consensus 39 ~~~v~C~~C~GsG-----~------~~C~~C~-------G~G~v~~~~---~-g-~~q~~~~C~-~C~G~Gk~---~C~~ 91 (111)
T PLN03165 39 ENTQPCFPCSGTG-----A------QVCRFCV-------GSGNVTVEL---G-G-GEKEVSKCI-NCDGAGSL---TCTT 91 (111)
T ss_pred ccCCCCCCCCCCC-----C------cCCCCCc-------CcCeEEEEe---C-C-cEEEEEECC-CCCCccee---eCCC
Confidence 4567899999997 2 3899999 999887532 2 2 256788999 89999974 5999
Q ss_pred CCCceecc
Q 007833 479 CQGMRCPA 486 (588)
Q Consensus 479 C~G~G~~~ 486 (588)
|+|.+.++
T Consensus 92 C~G~G~~~ 99 (111)
T PLN03165 92 CQGSGIQP 99 (111)
T ss_pred CCCCEEEe
Confidence 99999654
No 69
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4e-05 Score=76.95 Aligned_cols=55 Identities=24% Similarity=0.475 Sum_probs=49.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHH-Hhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYE-VLFD 345 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYe-vLsD 345 (588)
..+|.+|||.. .|+.+|++.||.+|++++|||...+ ....+.|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e--~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEE--GADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccc--cCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 36999999999 8899999999999999999999863 556789999999997 8875
No 70
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00048 Score=61.81 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=42.2
Q ss_pred cccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcc
Q 007833 292 SALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347 (588)
Q Consensus 292 ~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~ 347 (588)
.||||++ +++.+.||+|+||.-+..|||+... |--. .+||||+++|....
T Consensus 60 lIL~v~~--s~~k~KikeaHrriM~~NHPD~GGS-PYlA---sKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 60 LILGVTP--SLDKDKIKEAHRRIMLANHPDRGGS-PYLA---SKINEAKDLLEGTS 109 (112)
T ss_pred HHhCCCc--cccHHHHHHHHHHHHHcCCCcCCCC-HHHH---HHHHHHHHHHhccc
Confidence 6899999 8999999999999999999999964 5432 35999999997543
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.10 E-value=0.00043 Score=68.19 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=32.3
Q ss_pred cccccCCCceeecC--cccccCCCceeccceeEEEEEeCCcccC
Q 007833 460 PCAYVCANSRIYNA--TDWYICQGMRCPANTHKPSFHVNTSVTS 501 (588)
Q Consensus 460 ~C~y~C~GsGi~~~--~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d 501 (588)
+|| .|.|+|.... .+|+.|+|.|.+..+++..+++ +|+++
T Consensus 101 ~C~-~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~ 142 (186)
T TIGR02642 101 KCP-RCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDS 142 (186)
T ss_pred cCC-CCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccC
Confidence 466 6666665554 6799999999999999999999 88843
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0012 Score=63.14 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=58.0
Q ss_pred hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 285 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG----N-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 285 l~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~----~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
..+.+||+++|.......+++-++.-|.-...+.|||+... + ..|.|.-.+|++||.+|.||-+|+.|=.-+
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34578999998876545667777778999999999999531 1 358889999999999999999999997543
No 73
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.0015 Score=73.31 Aligned_cols=69 Identities=19% Similarity=0.436 Sum_probs=47.6
Q ss_pred cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeec-------cccceeEEEEEecccccCCCceee-cC
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSE-------PLFFGIFQKVDVPCAYVCANSRIY-NA 473 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q-------~~~~Gm~qq~q~~C~y~C~GsGi~-~~ 473 (588)
..|+.|+|.| .-......|+.|+ |+|.+..... .-..-++.....||+ .|.|.|.+ .-
T Consensus 3 ~~C~~C~g~G------~i~v~~e~c~vc~-------gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~-~c~gkG~V~v~ 68 (715)
T COG1107 3 KKCPECGGKG------KIVVGEEECPVCH-------GTGFSDDFDPKGVANLSRETVDLFASFEIPCP-KCRGKGTVTVY 68 (715)
T ss_pred ccccccCCCc------eEeeeeeeccccc-------ccccccccChhhhhhhhhccccccccCCCCCC-eeccceeEEEE
Confidence 4699999987 3334456799998 9997733110 111223445577999 89998854 66
Q ss_pred cccccCCCcee
Q 007833 474 TDWYICQGMRC 484 (588)
Q Consensus 474 ~~C~~C~G~G~ 484 (588)
.+|..|.|.|.
T Consensus 69 ~~c~~c~G~gk 79 (715)
T COG1107 69 DTCPECGGTGK 79 (715)
T ss_pred eecccCCCcee
Confidence 89999999984
No 74
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.00 E-value=0.0083 Score=66.68 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCh-------HHHHHHHHHHHHHHHhh
Q 007833 302 VDVSILKREYRKKAMLVHPDKNMGNE-------KAVEAFKKLQNAYEVLF 344 (588)
Q Consensus 302 as~~eIKkAYRklalk~HPDkn~~~p-------~A~e~Fk~I~~AYevLs 344 (588)
.+.++|||+|||..|.+||||.++.+ -|++.|..+++|++...
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999987642 26677888888887543
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0082 Score=58.37 Aligned_cols=54 Identities=35% Similarity=0.538 Sum_probs=46.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------hHHHHHHHHHHHHHHHh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-------EKAVEAFKKLQNAYEVL 343 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-------p~A~e~Fk~I~~AYevL 343 (588)
.+.|.+|+++. .++..+||++||++....|||+-..- ..+.+++++|++||+-+
T Consensus 113 ~~~l~~l~~~~--~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEI--KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCch--hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999 88999999999999999999986321 34889999999999743
No 76
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.0099 Score=57.80 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=52.0
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
|+....|.++....+.+.++..|+.+.+.+|||+....+. +-+.+..++.||.+|.||-+|..|=-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3455556665333456778999999999999999865433 336799999999999999999999643
No 77
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.025 Score=61.22 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=31.8
Q ss_pred cccccccccCccceeeec--cCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCcee
Q 007833 400 RRIACKKCNNFHVWIETK--KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI 470 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~--k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi 470 (588)
....|++|+|+|...... ..-....+|+.|+ |+|.+. ..||+ .|.|.|.
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~-------G~G~~i--------------~~pC~-~C~G~G~ 208 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN-------GTGKII--------------KDPCG-KCKGKGR 208 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc-------cceeEC--------------CCCCC-CCCCCCe
Confidence 556899999888533222 1123457788888 888443 23688 8888774
No 78
>PRK14282 chaperone protein DnaJ; Provisional
Probab=93.85 E-value=0.16 Score=55.12 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=18.8
Q ss_pred ceeEEEEEeCCcccCCC-CccccCCCC
Q 007833 487 NTHKPSFHVNTSVTSKH-NTSKGTSSG 512 (588)
Q Consensus 487 ~t~~v~V~Vp~Gv~d~~-~r~~g~g~~ 512 (588)
+.+.++|+||+|+.+++ .+++|.|-.
T Consensus 301 dG~~i~v~Ip~g~~~g~~iri~GkG~p 327 (369)
T PRK14282 301 EGGTTMLKIPPGTQPETVFRLKGKGLP 327 (369)
T ss_pred CCcEEEEEeCCCcCCCCEEEECCCCCC
Confidence 34678999999998884 466666543
No 79
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.037 Score=58.47 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=19.4
Q ss_pred cccccCCCceeecCcccccCCCceeccceeEEEEEeC
Q 007833 460 PCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 496 (588)
Q Consensus 460 ~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp 496 (588)
+|+ +|.|.|. .+|.+|.|.|-..+-.++-|.-.
T Consensus 247 ~C~-tC~grG~---k~C~TC~gtgsll~~t~~vV~wK 279 (406)
T KOG2813|consen 247 ECH-TCKGRGK---KPCTTCSGTGSLLNYTRIVVYWK 279 (406)
T ss_pred cCC-cccCCCC---cccccccCccceeeeEEEEEEee
Confidence 355 4555543 56777777776666555555554
No 80
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.096 Score=55.42 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=18.9
Q ss_pred EecccccCCCceeecCcccccCCCceec
Q 007833 458 DVPCAYVCANSRIYNATDWYICQGMRCP 485 (588)
Q Consensus 458 q~~C~y~C~GsGi~~~~~C~~C~G~G~~ 485 (588)
...|. .|+|.|+ .+|.+|+|.|..
T Consensus 234 ~~~C~-~C~G~G~---~~C~tC~grG~k 257 (406)
T KOG2813|consen 234 HDLCY-MCHGRGI---KECHTCKGRGKK 257 (406)
T ss_pred cchhh-hccCCCc---ccCCcccCCCCc
Confidence 34576 8999887 789999999853
No 81
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=93.25 E-value=0.024 Score=59.02 Aligned_cols=31 Identities=29% Similarity=0.849 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhh--------hhhhhHHHH
Q 007833 128 AFFIGFALALVVVALSGTILLWLY--------GSFWTTFFV 160 (588)
Q Consensus 128 ~~~~g~~~~~~iv~~~~~~~~w~~--------~~f~~~~~~ 160 (588)
+.|+|...-++++-+ ++..|+| +|||++..+
T Consensus 104 ~LF~Gi~~l~l~~lL--aL~vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 104 TLFVGIVILFLCCLL--ALGVWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 356666555555443 5555666 577775544
No 82
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=92.81 E-value=0.086 Score=43.34 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=30.7
Q ss_pred ccccccccccCccceeeecc----CcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCce
Q 007833 399 SRRIACKKCNNFHVWIETKK----SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSR 469 (588)
Q Consensus 399 sr~v~C~kC~GsG~~~~t~k----~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsG 469 (588)
.....|+.|+|+|......+ .-.....|+.|+ |+|.+. . ..+|+ .|.|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~-------G~G~~i-~------------~~~C~-~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCG-------GTGKII-E------------KDPCK-TCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTS-------SSSEE--T------------SSB-S-SSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCc-------ceeeEE-C------------CCCCC-CCCCcC
Confidence 34568999999996544332 122456799999 999664 1 23799 899875
No 83
>PRK14279 chaperone protein DnaJ; Provisional
Probab=91.54 E-value=0.13 Score=56.28 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=16.7
Q ss_pred EEEEEeCCcccCC-CCccccCCCC
Q 007833 490 KPSFHVNTSVTSK-HNTSKGTSSG 512 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~-~~r~~g~g~~ 512 (588)
+++|+||+|+.++ ..+++|.|-.
T Consensus 320 ~i~v~Ip~g~~~g~~iri~g~G~p 343 (392)
T PRK14279 320 PVGVKVPAGTADGRILRVRGRGVP 343 (392)
T ss_pred eEEEEECCCCCCCCEEEECCCCCC
Confidence 4899999999887 4456666544
No 84
>PRK14300 chaperone protein DnaJ; Provisional
Probab=91.10 E-value=0.14 Score=55.49 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=18.3
Q ss_pred eeEEEEEeCCcccCC-CCccccCCCC
Q 007833 488 THKPSFHVNTSVTSK-HNTSKGTSSG 512 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~-~~r~~g~g~~ 512 (588)
.+.++|+||+|+.++ ..+++|.|-.
T Consensus 291 g~~i~v~Ip~g~~~g~~iri~g~G~p 316 (372)
T PRK14300 291 GGKVNLTIPAGTQNGDQLRLRSKGMS 316 (372)
T ss_pred CCEEEEEECCccCCCcEEEECCCCCC
Confidence 367999999999887 4466655543
No 85
>PRK10767 chaperone protein DnaJ; Provisional
Probab=90.94 E-value=0.21 Score=54.20 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=28.5
Q ss_pred ccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833 401 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY 471 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~ 471 (588)
...|+.|+|+|.....-..-.....|+.|+ |.|.+.. .+|+ .|.|.|..
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCH-------GRGKIIK--------------DPCK-KCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCC-------CceeECC--------------CCCC-CCCCCceE
Confidence 357888988874221111111235788887 8885421 2587 78887643
No 86
>PRK14290 chaperone protein DnaJ; Provisional
Probab=90.57 E-value=1 Score=48.75 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=17.6
Q ss_pred eEEEEEeCCcccCC-CCccccCCCC
Q 007833 489 HKPSFHVNTSVTSK-HNTSKGTSSG 512 (588)
Q Consensus 489 ~~v~V~Vp~Gv~d~-~~r~~g~g~~ 512 (588)
.+++|+||+|+.++ ..+++|.|-.
T Consensus 296 g~i~V~Ip~g~~~g~~iri~g~G~p 320 (365)
T PRK14290 296 EKYNLKIPEGTQPGEVLKIKGAGMP 320 (365)
T ss_pred ceEEEEECCccCCCcEEEECCCCCC
Confidence 35899999999888 4466666544
No 87
>PRK14301 chaperone protein DnaJ; Provisional
Probab=90.46 E-value=0.18 Score=54.87 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=16.3
Q ss_pred EEEEeCCcccCC-CCccccCCCC
Q 007833 491 PSFHVNTSVTSK-HNTSKGTSSG 512 (588)
Q Consensus 491 v~V~Vp~Gv~d~-~~r~~g~g~~ 512 (588)
++|+||+|+.++ ..+++|.|-.
T Consensus 292 i~v~ip~g~~~g~~~ri~g~G~p 314 (373)
T PRK14301 292 VTLDIPKGTQSGEVFRLRGKGLP 314 (373)
T ss_pred EEEEECCCcCCCcEEEEcCCCCC
Confidence 899999999887 4466666544
No 88
>PRK14286 chaperone protein DnaJ; Provisional
Probab=90.22 E-value=0.2 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=17.2
Q ss_pred eeEEEEEeCCcccCCC-CccccCCC
Q 007833 488 THKPSFHVNTSVTSKH-NTSKGTSS 511 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~~-~r~~g~g~ 511 (588)
.+.++|+||+|+.+++ .+++|.|=
T Consensus 296 G~~i~v~ip~g~~~g~~~ri~G~G~ 320 (372)
T PRK14286 296 GKKAKMKIPEGTESGQVFRLKGHGM 320 (372)
T ss_pred CCEEEEEeCCccCCCcEEEECCCCC
Confidence 4568999999998873 45555544
No 89
>PRK14288 chaperone protein DnaJ; Provisional
Probab=89.83 E-value=0.21 Score=54.19 Aligned_cols=23 Identities=0% Similarity=0.095 Sum_probs=16.4
Q ss_pred eEEEEEeCCcccCCC-CccccCCC
Q 007833 489 HKPSFHVNTSVTSKH-NTSKGTSS 511 (588)
Q Consensus 489 ~~v~V~Vp~Gv~d~~-~r~~g~g~ 511 (588)
+.++|+||+|+.+++ .+++|.|=
T Consensus 285 ~~l~i~i~~~~~~g~~~~i~g~G~ 308 (369)
T PRK14288 285 DELELKIPRNARDRQTFAFRNEGV 308 (369)
T ss_pred CEEEEEeCCCCCCCcEEEEcCCCC
Confidence 468999999998873 45555543
No 90
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=89.75 E-value=0.24 Score=53.22 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=16.5
Q ss_pred EEEEEeCCcccCC-CCccccCCCC
Q 007833 490 KPSFHVNTSVTSK-HNTSKGTSSG 512 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~-~~r~~g~g~~ 512 (588)
.++|+||+|+.++ ..+++|.|-.
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p 317 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVP 317 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcC
Confidence 5789999999887 3456655543
No 91
>PRK14295 chaperone protein DnaJ; Provisional
Probab=89.71 E-value=0.24 Score=54.10 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=18.0
Q ss_pred eeEEEEEeCCcccCCC-CccccCCCC
Q 007833 488 THKPSFHVNTSVTSKH-NTSKGTSSG 512 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~~-~r~~g~g~~ 512 (588)
.+.++|+||+|+.+++ .+++|.|-.
T Consensus 312 G~~~~v~ip~g~~~g~~iri~G~G~p 337 (389)
T PRK14295 312 GPPVTVKLPPGTPNGRVLRVRGKGAV 337 (389)
T ss_pred CCEEEEEECCccCCCcEEEECCCCcC
Confidence 4579999999998873 455655543
No 92
>PRK14294 chaperone protein DnaJ; Provisional
Probab=89.56 E-value=0.24 Score=53.67 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=20.8
Q ss_pred EEEEeCCcccCC-CCccccCCCCCCCCCCCCCcccc
Q 007833 491 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 525 (588)
Q Consensus 491 v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~ 525 (588)
++|+||+|+.++ ..+++|.|-...+++ ..+|+++
T Consensus 292 ~~v~ip~g~~~g~~iri~G~G~p~~~~~-~~GDL~V 326 (366)
T PRK14294 292 RELKIPKGTQPGDIFRFKGKGIPSLRGG-GRGDQII 326 (366)
T ss_pred EEEEECCCcCCCCEEEECCCCCCCCCCC-CCCCEEE
Confidence 689999999888 446666665433332 2345444
No 93
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=89.40 E-value=0.27 Score=54.44 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=15.6
Q ss_pred ceeEEEEEeCCc--ccCCC-CccccCC
Q 007833 487 NTHKPSFHVNTS--VTSKH-NTSKGTS 510 (588)
Q Consensus 487 ~t~~v~V~Vp~G--v~d~~-~r~~g~g 510 (588)
..+.+.|.||+| +..+. .+++|.|
T Consensus 299 dG~~l~I~ip~g~vt~pg~~~~I~geG 325 (421)
T PTZ00037 299 DGRKLLVNTPPGEVVKPGDIKVINNEG 325 (421)
T ss_pred CCCeEEEEeCCCcccCCCcEEEeCCCC
Confidence 345688999998 66663 3455544
No 94
>PRK14285 chaperone protein DnaJ; Provisional
Probab=89.38 E-value=0.23 Score=53.90 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=16.0
Q ss_pred eeEEEEEeCCcccCC-CCccccCCC
Q 007833 488 THKPSFHVNTSVTSK-HNTSKGTSS 511 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~-~~r~~g~g~ 511 (588)
.+.++|+||+|+.++ ..+++|.|-
T Consensus 292 G~~v~V~Ip~g~~~g~~irl~GkG~ 316 (365)
T PRK14285 292 SKKIKIKIPKGTENDEQIIIKNEGM 316 (365)
T ss_pred CCEEEEEeCCCcCCCcEEEECCCCc
Confidence 356888889888777 335555544
No 95
>PRK14291 chaperone protein DnaJ; Provisional
Probab=89.23 E-value=0.29 Score=53.39 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=18.2
Q ss_pred eeEEEEEeCCcccCCC-CccccCCCCC
Q 007833 488 THKPSFHVNTSVTSKH-NTSKGTSSGQ 513 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~~-~r~~g~g~~~ 513 (588)
.+.++|+||+|+.+++ .+++|.|-..
T Consensus 301 G~~l~V~Ip~g~~~G~~i~i~G~G~p~ 327 (382)
T PRK14291 301 GKKEKVKIPPGTKEGDKIRVPGKGMPR 327 (382)
T ss_pred CCEEEEEECCccCCCCEEEECCCCCCC
Confidence 4568999999998883 4555555443
No 96
>PRK14284 chaperone protein DnaJ; Provisional
Probab=89.15 E-value=0.22 Score=54.36 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=18.2
Q ss_pred eEEEEEeCCcccCCC-CccccCCCCC
Q 007833 489 HKPSFHVNTSVTSKH-NTSKGTSSGQ 513 (588)
Q Consensus 489 ~~v~V~Vp~Gv~d~~-~r~~g~g~~~ 513 (588)
..++|+||+|+.+++ .+++|.|-..
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~ 331 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPN 331 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCC
Confidence 578999999998883 4666655443
No 97
>PRK14296 chaperone protein DnaJ; Provisional
Probab=88.90 E-value=0.31 Score=53.05 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=12.7
Q ss_pred EEEEeCCcccCC-CCccccCC
Q 007833 491 PSFHVNTSVTSK-HNTSKGTS 510 (588)
Q Consensus 491 v~V~Vp~Gv~d~-~~r~~g~g 510 (588)
++|+||+|+..+ ..+++|.|
T Consensus 302 ~~v~ip~~t~~g~~~ri~GkG 322 (372)
T PRK14296 302 IKYKLPKSINSNELIIINNKG 322 (372)
T ss_pred EEEEECCccCCCcEEEEcCCC
Confidence 677888887766 33444444
No 98
>PRK14276 chaperone protein DnaJ; Provisional
Probab=88.87 E-value=0.31 Score=53.10 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=7.9
Q ss_pred ccccccccCccc
Q 007833 401 RIACKKCNNFHV 412 (588)
Q Consensus 401 ~v~C~kC~GsG~ 412 (588)
...|+.|+|+|.
T Consensus 163 ~~~C~~C~G~G~ 174 (380)
T PRK14276 163 PVTCGKCHGSGV 174 (380)
T ss_pred CccCCCCCCeeE
Confidence 346777777764
No 99
>PRK14277 chaperone protein DnaJ; Provisional
Probab=88.39 E-value=0.39 Score=52.43 Aligned_cols=49 Identities=20% Similarity=0.546 Sum_probs=27.2
Q ss_pred ccccccccCccceeeeccC----cccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833 401 RIACKKCNNFHVWIETKKS----KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY 471 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k~----~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~ 471 (588)
...|+.|+|+|........ -.....|+.|+ |+|.+.. .+|. .|.|.|+.
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCH-------GEGKIIT--------------DPCN-KCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCC-------cceeecc--------------CCCC-CCCCCcEE
Confidence 4568888888742211110 01235788887 7775421 2577 77776643
No 100
>PRK14278 chaperone protein DnaJ; Provisional
Probab=88.33 E-value=0.33 Score=52.85 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=18.0
Q ss_pred eeEEEEEeCCcccCCC-CccccCCCC
Q 007833 488 THKPSFHVNTSVTSKH-NTSKGTSSG 512 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~~-~r~~g~g~~ 512 (588)
...++|.||+|+.+++ .+++|.|-.
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p 314 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMP 314 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCC
Confidence 5678999999998874 456655543
No 101
>PRK14298 chaperone protein DnaJ; Provisional
Probab=88.32 E-value=0.26 Score=53.69 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=15.3
Q ss_pred EEEEeCCcccCCC-CccccCCC
Q 007833 491 PSFHVNTSVTSKH-NTSKGTSS 511 (588)
Q Consensus 491 v~V~Vp~Gv~d~~-~r~~g~g~ 511 (588)
++|.||+|+.+++ .+++|.|-
T Consensus 293 i~v~ip~g~~~g~~lri~g~G~ 314 (377)
T PRK14298 293 VKMNIPPGTQTHSVFRLKDKGM 314 (377)
T ss_pred EEEEeCCCcccCCEEEECCCCC
Confidence 7899999998873 45555554
No 102
>PRK14280 chaperone protein DnaJ; Provisional
Probab=87.76 E-value=0.39 Score=52.24 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=15.9
Q ss_pred EEEEEeCCcccCCC-CccccCCC
Q 007833 490 KPSFHVNTSVTSKH-NTSKGTSS 511 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~~-~r~~g~g~ 511 (588)
+++|+||+|+.+++ .+++|.|-
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~ 316 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGV 316 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCC
Confidence 37899999998873 45555554
No 103
>PRK14281 chaperone protein DnaJ; Provisional
Probab=87.50 E-value=0.41 Score=52.46 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=16.0
Q ss_pred EEEEEeCCcccCC-CCccccCCC
Q 007833 490 KPSFHVNTSVTSK-HNTSKGTSS 511 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~-~~r~~g~g~ 511 (588)
+++|+||+|+.++ ..+++|.|=
T Consensus 313 ~i~v~ip~g~~~G~~~ri~g~G~ 335 (397)
T PRK14281 313 AVKLTIPAGTQPETMLRIPGKGI 335 (397)
T ss_pred cEEEEeCCccCCCcEEEEcCCCC
Confidence 4789999999888 445555554
No 104
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=87.23 E-value=1.2 Score=41.76 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=35.4
Q ss_pred ccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcc
Q 007833 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347 (588)
Q Consensus 291 Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~ 347 (588)
..||||++ ..+.++|.+.|.+|-...+|++... .-- =.+|..|.|.|..+-
T Consensus 61 ~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGGS-fYL---QSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKE--ELSREEIQKRYKHLFKANDPSKGGS-FYL---QSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G----SHHHHHHHHHHHHHHT-CCCTS--HHH---HHHHHHHHHHHHHHH
T ss_pred HHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCCC-HHH---HHHHHHHHHHHHHHH
Confidence 47899999 8899999999999999999998853 222 235788888886443
No 105
>PRK14289 chaperone protein DnaJ; Provisional
Probab=87.15 E-value=0.36 Score=52.66 Aligned_cols=23 Identities=4% Similarity=0.020 Sum_probs=16.6
Q ss_pred EEEEEeCCcccCC-CCccccCCCC
Q 007833 490 KPSFHVNTSVTSK-HNTSKGTSSG 512 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~-~~r~~g~g~~ 512 (588)
+++|.||+|+.++ ..+++|.|-.
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p 328 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLP 328 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcC
Confidence 4899999999887 4456555543
No 106
>PRK14283 chaperone protein DnaJ; Provisional
Probab=86.77 E-value=0.56 Score=51.03 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=31.0
Q ss_pred cccccccccCccceeeecc----CcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833 400 RRIACKKCNNFHVWIETKK----SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY 471 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k----~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~ 471 (588)
....|+.|+|+|....... .-.....|+.|+ |+|... ..+|. .|.|.|+.
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~-------G~G~~~--------------~~~C~-~C~G~g~v 215 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQ-------GEGKIV--------------EKPCS-NCHGKGVV 215 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCC-------ccceec--------------CCCCC-CCCCceee
Confidence 3457999999884321111 011346899998 888542 23588 88887754
No 107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=86.69 E-value=0.37 Score=54.84 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=22.9
Q ss_pred CcccccccccccCccceeeeccCcccccccccccccccccCCCeeEE
Q 007833 397 GESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVE 443 (588)
Q Consensus 397 ~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve 443 (588)
..++.++|++|+|.|. -.....|+.|+ |+|.+.
T Consensus 49 ~~~~~~pc~~c~gkG~-------V~v~~~c~~c~-------G~gkv~ 81 (715)
T COG1107 49 FASFEIPCPKCRGKGT-------VTVYDTCPECG-------GTGKVL 81 (715)
T ss_pred cccCCCCCCeecccee-------EEEEeecccCC-------CceeEE
Confidence 3566788999988761 12346788998 888653
No 108
>PRK14287 chaperone protein DnaJ; Provisional
Probab=86.67 E-value=0.48 Score=51.49 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=26.8
Q ss_pred ccccccccCccceeeeccCc----ccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCcee
Q 007833 401 RIACKKCNNFHVWIETKKSK----ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI 470 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k~~----~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi 470 (588)
...|+.|+|+|.....-+.. .....|+.|+ |+|.+.. .+|+ .|.|.+.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~ 206 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCE-------GTGKIIK--------------QKCA-TCGGKGK 206 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCC-------CCCcccc--------------ccCC-CCCCeeE
Confidence 35688888887432211100 1235788887 7775421 2477 6777653
No 109
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=86.39 E-value=0.36 Score=47.87 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=24.8
Q ss_pred ccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEe
Q 007833 399 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQS 445 (588)
Q Consensus 399 sr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~ 445 (588)
.+...|+.|+|+|..+ .....|+.|+ |+|.+...
T Consensus 97 ~~~~~C~~C~G~G~~i------~~~~~C~~C~-------G~G~v~~~ 130 (186)
T TIGR02642 97 LNSCKCPRCRGTGLIQ------RRQRECDTCA-------GTGRFRPT 130 (186)
T ss_pred HcCCcCCCCCCeeEEe------cCCCCCCCCC-------CccEEeee
Confidence 4477899999998322 1125799999 99988663
No 110
>PRK14293 chaperone protein DnaJ; Provisional
Probab=85.74 E-value=0.59 Score=50.78 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=15.0
Q ss_pred EEEEeCCcccCC-CCccccCCC
Q 007833 491 PSFHVNTSVTSK-HNTSKGTSS 511 (588)
Q Consensus 491 v~V~Vp~Gv~d~-~~r~~g~g~ 511 (588)
++|+||+|+.++ ..+++|.|=
T Consensus 295 ~~i~ip~~~~~g~~~ri~g~G~ 316 (374)
T PRK14293 295 VELTIPAGTQPNTVLTLENKGV 316 (374)
T ss_pred EEEEeCCCCCCCCEEEECCCCC
Confidence 788999998777 445655554
No 111
>PRK14297 chaperone protein DnaJ; Provisional
Probab=85.63 E-value=0.56 Score=51.06 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=16.4
Q ss_pred EEEEEeCCcccCCC-CccccCCCC
Q 007833 490 KPSFHVNTSVTSKH-NTSKGTSSG 512 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~~-~r~~g~g~~ 512 (588)
+++|.||+|+.+++ .+++|.|-.
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p 322 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVP 322 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcC
Confidence 37899999998874 456655543
No 112
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=85.42 E-value=0.79 Score=41.92 Aligned_cols=44 Identities=23% Similarity=0.506 Sum_probs=30.7
Q ss_pred ccccccCccceeeeccC-cccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833 403 ACKKCNNFHVWIETKKS-KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY 471 (588)
Q Consensus 403 ~C~kC~GsG~~~~t~k~-~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~ 471 (588)
.|+.|+|+|.....-.. ......|+.|+ |+|.+ +|. .|.|.|..
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~-------G~Gk~-----------------~C~-~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCD-------GAGSL-----------------TCT-TCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCC-------Cccee-----------------eCC-CCCCCEEE
Confidence 89999999964432211 12356899999 99931 388 89998864
No 113
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=83.94 E-value=1 Score=47.86 Aligned_cols=55 Identities=29% Similarity=0.318 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 302 VDVSILKREYRKKAMLVHPDKNMG----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 302 as~~eIKkAYRklalk~HPDkn~~----~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
++..+|..+|+..++..|||+-.. .-.-++.|+.|.+||++|.+.++|..+|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 567899999999999999999841 1235677999999999999987777777653
No 114
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=82.61 E-value=0.91 Score=53.46 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=43.9
Q ss_pred CCCceeccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhc
Q 007833 479 CQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAG 543 (588)
Q Consensus 479 C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~ 543 (588)
|.|.......+.++|+||+|+.+| ..+.+|.|..+ ++++ +|++..+ .+|++|.+ |.+|+-.+
T Consensus 687 g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDeg--pgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGg 763 (871)
T TIGR03835 687 GNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDF--GNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGG 763 (871)
T ss_pred CCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCC--CCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCC
Confidence 455556777889999999999888 44666666643 3334 5555555 88888887 56666555
Q ss_pred cc
Q 007833 544 LF 545 (588)
Q Consensus 544 ~f 545 (588)
-+
T Consensus 764 tI 765 (871)
T TIGR03835 764 II 765 (871)
T ss_pred EE
Confidence 43
No 115
>PRK14292 chaperone protein DnaJ; Provisional
Probab=80.09 E-value=1.3 Score=48.16 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=15.1
Q ss_pred EEEEeCCcccCCC-CccccCCCC
Q 007833 491 PSFHVNTSVTSKH-NTSKGTSSG 512 (588)
Q Consensus 491 v~V~Vp~Gv~d~~-~r~~g~g~~ 512 (588)
.+|+||+|+.+++ .+++|.|-.
T Consensus 290 ~~v~ip~g~~~g~~~~i~g~G~p 312 (371)
T PRK14292 290 QVIEVKPGTQHGDLHRLRGQGMP 312 (371)
T ss_pred EEEecCCCcCCCcEEEECCCCCC
Confidence 4799999998874 355555443
No 116
>COG4709 Predicted membrane protein [Function unknown]
Probab=79.85 E-value=27 Score=35.00 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=24.2
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 86 IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALV 127 (588)
Q Consensus 86 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (588)
+..+++||.-+++.++|..+.-+...++++-..+.+..++.+
T Consensus 82 ii~~~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a 123 (195)
T COG4709 82 IIALIGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWA 123 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777778888887765555444444443333333333
No 117
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=77.51 E-value=4.8 Score=36.83 Aligned_cols=47 Identities=23% Similarity=0.211 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHhhhcc
Q 007833 301 NVDVSILKREYRKKAMLVHPDKNMGNEK----AVEAFKKLQNAYEVLFDSF 347 (588)
Q Consensus 301 ~as~~eIKkAYRklalk~HPDkn~~~p~----A~e~Fk~I~~AYevLsD~~ 347 (588)
..+..++|+|.|..-+++|||....+|+ .++.+|.|+.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 4567899999999999999998776665 3456888887777776543
No 118
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=74.25 E-value=8.5 Score=33.64 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007833 116 KFLMVLVVAALVAFFIGFALALVVVALS 143 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~~iv~~~ 143 (588)
.+++.+.++++++.+.|.....+.++++
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~ 38 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLL 38 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445556666666677766655555443
No 119
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=71.99 E-value=24 Score=40.63 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHhhh
Q 007833 95 TSFFSVIWCSILSVIAMVG---MFKF-LMVLVVAALVAFFIGFA 134 (588)
Q Consensus 95 ~~~~~~~w~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~g~~ 134 (588)
.|+.+++++.++.+++..+ +.|. ++++.+.++++.|.-++
T Consensus 51 ~s~~~~~~~~~~~~~~l~~~~~~~k~~~~~l~~~sa~~~Yf~~~ 94 (545)
T PRK11598 51 ASMPVVAFSVINIVFTLLSFPWLRRPLACLFILVGAAAQYFMMT 94 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777666666664 3333 44455555555444333
No 120
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=71.60 E-value=1.6e+02 Score=32.16 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhc--c-hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007833 64 LGHFAKIMLLLSMLWLDCTIR--G-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVV 140 (588)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv 140 (588)
++-++.+++.++..|+|-.+- + ...+...+..+.=.|+=...=|++++.+++.-++..++..+..+| +|.++=.
T Consensus 11 l~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi~~val~~assq~---sPR~l~~ 87 (371)
T PF10011_consen 11 LYAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQF---SPRLLRN 87 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHH
Confidence 344566777778888886544 1 444555555544444333344444455555544444444444443 4433311
Q ss_pred --------HHHHHHHHHhhhhhhhHHHHHHhhhhccccchhhHHHHHHHHHHHhhhhhhhhhhhHH-HHHhhhhhhHHH
Q 007833 141 --------ALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLL-LALNLSFVSSDA 210 (588)
Q Consensus 141 --------~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~~~~~gw~g~~-l~~nlsfls~di 210 (588)
-.+|++| |.|-...++++..+--.--.-.++++.++.++++.|+...+-|..-+ -+++.+-+...+
T Consensus 88 f~~d~~~q~vLg~Fi----gtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i 162 (371)
T PF10011_consen 88 FMRDRVTQVVLGTFI----GTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARI 162 (371)
T ss_pred HHhCchHHHHHHHHH----HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1122222 22222222222222222222458889999999999999999997532 234444443333
No 121
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=71.23 E-value=83 Score=31.05 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhcccc----chhhHHHHHHHHHHHhhhhhhhhh
Q 007833 134 ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMYSIYCAWTYVGW 194 (588)
Q Consensus 134 ~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~y~~~~~~gw 194 (588)
...++|.++.--+++.+-|.+|......+++|...-+ .|-|=...++.-|++|++.....+
T Consensus 58 ~G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~ 122 (186)
T PF09605_consen 58 RGAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPY 122 (186)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhH
Confidence 3455666666666678888889988888888876433 222223346778888888765433
No 122
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=69.88 E-value=1.2e+02 Score=34.18 Aligned_cols=74 Identities=23% Similarity=0.410 Sum_probs=39.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhh-----------h------------hhhhHHHHHHhhhhcccc-ch-hhHHHHHHH
Q 007833 127 VAFFIGFALALVVVALSGTILLWLY-----------G------------SFWTTFFVIFLGGLAFKF-TH-ERLALFITT 181 (588)
Q Consensus 127 ~~~~~g~~~~~~iv~~~~~~~~w~~-----------~------------~f~~~~~~~~~~g~~~~~-~~-~~~~~~~~~ 181 (588)
..+..+.|.|++++.+ +..+|-| . -+|...++.+.+-....+ .+ ++|.++...
T Consensus 136 ~~~l~~~~g~~~~~p~--~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~ 213 (495)
T PRK11644 136 NALLLTLTGGLTLAPT--CLLFWHYLAQNTWLPLGPSLVSQPVNWRGRHIVWYLLLFVLSIWLQLGLPDELSRFTPFCLA 213 (495)
T ss_pred HHHHHHHhchHHHHHH--HHHHHHHHhhcccccCCccccCCCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455667778877777 6677777 1 255543332222222111 12 344443322
Q ss_pred HHHHhhhhhhhhhhhHHHHHhh
Q 007833 182 MYSIYCAWTYVGWLGLLLALNL 203 (588)
Q Consensus 182 ~~~~y~~~~~~gw~g~~l~~nl 203 (588)
..++.+..+.||-|.+++.=+
T Consensus 214 -~p~i~~a~~~g~~~a~l~~l~ 234 (495)
T PRK11644 214 -IPIIALAWRYGWQGALLATLL 234 (495)
T ss_pred -HHHHHHHHhcCccchHHHHHH
Confidence 234566668999877775433
No 123
>PF13446 RPT: A repeated domain in UCH-protein
Probab=68.82 E-value=7.5 Score=31.30 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=23.3
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHH
Q 007833 289 DHYSALGLSRFENVDVSILKREYRKKAM 316 (588)
Q Consensus 289 d~Y~ILGv~~~~~as~~eIKkAYRklal 316 (588)
+-|++||+++ +.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~--~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDE--DTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCC--CCCHHHHHHHHHHHHH
Confidence 4699999998 8999999999998776
No 124
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=68.48 E-value=20 Score=33.74 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhhhhhH-HHHHHhhhhccccchhhHHHHHHHHHHHhh
Q 007833 141 ALSGTILLWLYGSFWTT-FFVIFLGGLAFKFTHERLALFITTMYSIYC 187 (588)
Q Consensus 141 ~~~~~~~~w~~~~f~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~ 187 (588)
.+..++.+|+|.+.+.. .-=+.++|..+.-++...++.+.++..+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (153)
T PF03208_consen 65 VLLLVVALWAFIYKSRKENDPIVIGGRKISPRQVLLALLIVSILLLFF 112 (153)
T ss_pred HHHHHHHHHHHHhhhcccCcchhccCcccCHHHHHHHHHHHHHHHHHH
Confidence 33445555666666654 122233444444444444444444444444
No 125
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=67.79 E-value=14 Score=38.83 Aligned_cols=21 Identities=5% Similarity=-0.047 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCC
Q 007833 303 DVSILKREYRKKAMLVHPDKN 323 (588)
Q Consensus 303 s~~eIKkAYRklalk~HPDkn 323 (588)
-++++.+++..+...+++..+
T Consensus 154 ~~~~~~~~~~~~~~E~~g~~~ 174 (301)
T PF14362_consen 154 LEKEIDRAQQEAQCEIFGTGG 174 (301)
T ss_pred HHHHHHHHHHHHHHhhcCCCC
Confidence 356788888888888888744
No 126
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=62.35 E-value=12 Score=37.33 Aligned_cols=36 Identities=11% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhh
Q 007833 301 NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344 (588)
Q Consensus 301 ~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLs 344 (588)
+|+.|||++|+.++..+|- +|+ +.-.+|-.|||.+.
T Consensus 3 ~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAIL 38 (194)
T ss_pred CCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHHH
Confidence 8999999999999999982 233 44556899998553
No 127
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=61.35 E-value=58 Score=30.53 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccchhh
Q 007833 138 VVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER 174 (588)
Q Consensus 138 ~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~ 174 (588)
.++++.+++++|+... +.+.+..++.+....+-|+-
T Consensus 100 ~~~~~~~~~~l~~~~~-~~~l~~~l~~~~~lvl~HA~ 135 (153)
T PF03208_consen 100 LALLIVSILLLFFTSA-GLTLFWSLGASVLLVLLHAS 135 (153)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666444 44445555555555555544
No 128
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.12 E-value=6.6 Score=41.25 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=31.6
Q ss_pred cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCC
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQ 480 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~ 480 (588)
-.|..|+|.+ -..|..|+ |+=.+...... .+.+ .+|+ .|+..|.+ .|+.|.
T Consensus 230 ~~C~~CGg~r-----------FlpC~~C~-------GS~kv~~~~~~--~~~~----~rC~-~CNENGLv---rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGAR-----------FLPCSNCH-------GSCKVHEEEED--DGGV----LRCL-ECNENGLV---RCPVCS 280 (281)
T ss_pred CcCCCcCCcc-----------eEecCCCC-------CceeeeeeccC--CCcE----EECc-ccCCCCce---eCCccC
Confidence 5688888864 45688998 76655431111 1222 2598 89999874 566664
No 129
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=58.69 E-value=8.8 Score=45.92 Aligned_cols=43 Identities=19% Similarity=0.454 Sum_probs=27.0
Q ss_pred ccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeC
Q 007833 425 WCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 496 (588)
Q Consensus 425 ~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp 496 (588)
.|..|+ |+|++.+.+ .+.|.. . .+|..|+|.++-++ .++|+..
T Consensus 732 RCe~C~-------GdG~ikIeM-~FLpdV----y---------------v~CevC~GkRYn~E--tLev~yk 774 (935)
T COG0178 732 RCEACQ-------GDGVIKIEM-HFLPDV----Y---------------VPCEVCHGKRYNRE--TLEVKYK 774 (935)
T ss_pred CCcccc-------CCceEEEEe-ccCCCc----e---------------eeCCCcCCcccccc--eEEEEEC
Confidence 488998 999887765 344432 2 34566777775555 4555554
No 130
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.34 E-value=5 Score=48.84 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=24.7
Q ss_pred cccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEE
Q 007833 424 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPS 492 (588)
Q Consensus 424 r~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~ 492 (588)
-.|+.|+ |.|++....+ +.+. . ..+|+.|+|.+..++.-.+.
T Consensus 737 G~C~~C~-------G~G~~~~~~~-f~~~----~---------------~~~C~~C~G~R~~~e~l~v~ 778 (924)
T TIGR00630 737 GRCEACQ-------GDGVIKIEMH-FLPD----V---------------YVPCEVCKGKRYNRETLEVK 778 (924)
T ss_pred CCCCCCc-------cceEEEEEcc-CCCC----c---------------ccCCCCcCCceeChHHHhce
Confidence 3599998 9998876432 2221 1 34566667776666654333
No 131
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=58.22 E-value=1.7e+02 Score=28.94 Aligned_cols=33 Identities=21% Similarity=0.573 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhc
Q 007833 135 LALVVVALSGTILLWLYGSFWTTFFVIFLGGLA 167 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~ 167 (588)
..++|.+++--+++.+-|.+|......+++|..
T Consensus 61 G~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gli 93 (189)
T TIGR02185 61 GVIFIFGILLGLLFFLMGMYWPMIISSIIGGLL 93 (189)
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345666666556677888888777777776654
No 132
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=57.42 E-value=1.6e+02 Score=27.31 Aligned_cols=48 Identities=15% Similarity=0.401 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007833 96 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALS 143 (588)
Q Consensus 96 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~ 143 (588)
.+++-+.+.++++.-...=+..-...--+...-.++|++.-.+++|..
T Consensus 33 ~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l 80 (136)
T PF08507_consen 33 SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTL 80 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHH
Confidence 333334444444433332222222444455555666666666666553
No 133
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=57.14 E-value=12 Score=29.04 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhh
Q 007833 177 LFITTMYSIYCAWTYVGWLGLLLALNL 203 (588)
Q Consensus 177 ~~~~~~~~~y~~~~~~gw~g~~l~~nl 203 (588)
.|+|+++++..+-..+.|.|++++--.
T Consensus 3 ~wlt~iFsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888999998765443
No 134
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.24 E-value=9.6 Score=38.89 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=31.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccc
Q 007833 129 FFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK 169 (588)
Q Consensus 129 ~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~ 169 (588)
..+||-+-.+.|+. ++.|+...+.+.-++++..|++.+
T Consensus 158 ~IlGYCLfPl~v~a---li~~~~~~l~~lr~vv~~~~~~WS 195 (234)
T KOG2946|consen 158 CILGYCLFPLVVAA---LIICLFRDLFFLRLVVTSIGLAWS 195 (234)
T ss_pred hhhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888887765 699999999999999999998876
No 135
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=55.70 E-value=8 Score=28.75 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=21.6
Q ss_pred cccccccccCccceeeeccCccccccccccc
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECN 430 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~ 430 (588)
+..+|+.|.|+.....+.+.....-.|..|.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg 32 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCG 32 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCC
Confidence 3568999988765555555555667788886
No 136
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=54.91 E-value=1.2e+02 Score=32.36 Aligned_cols=10 Identities=0% Similarity=0.348 Sum_probs=4.2
Q ss_pred HHHHHHHhhh
Q 007833 179 ITTMYSIYCA 188 (588)
Q Consensus 179 ~~~~~~~y~~ 188 (588)
++.+.++|-.
T Consensus 111 lpi~~~l~g~ 120 (385)
T PF03547_consen 111 LPILQALFGE 120 (385)
T ss_pred HHHHHHHhcc
Confidence 3344444443
No 137
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.79 E-value=69 Score=38.16 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=20.8
Q ss_pred chhhhHHHHHHHHhHHHH----HHHHHHHHHhcCch
Q 007833 6 KLSVNVVVRSLRVYVVPT----LKAAIELLERQSPM 37 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 37 (588)
.++.++-++.+|-++--+ ++.+..+.|++.|.
T Consensus 657 ~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp 692 (1189)
T KOG2041|consen 657 TCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP 692 (1189)
T ss_pred ceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch
Confidence 345556677777654322 46778888888776
No 138
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=50.86 E-value=2.4e+02 Score=34.20 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=65.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 52 KVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI 131 (588)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (588)
-.++.||-+.+-.-.....+++....|-=-. .+-+++- |.++|..-||+.|.+|+..++... +.+-.-+-
T Consensus 69 y~~~~Fpq~r~RfR~~L~YI~~~~l~W~lYf------av~~rs~--fi~~~~~slc~lslv~~mf~~ft~--~~lY~rhy 138 (1318)
T KOG3618|consen 69 YLERCFPQTRRRFRYALFYIGFACLLWSLYF------AVHMRSR--FIVMVAPSLCFLSLVCVMFFLFTF--TKLYARHY 138 (1318)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------eeccCce--eeeehHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 3456677766554444445555556663111 1233444 788999999999888876655432 11111111
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccchhhHHHHHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 007833 132 GFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLS 204 (588)
Q Consensus 132 g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~~~~~gw~g~~l~~nls 204 (588)
--|-.+....++++-+ +++.--+-.+|+---..|+.-+-.+.+||-+-----|||+.+.+--|
T Consensus 139 ~~TS~~~tlLvc~~tL----------a~ltat~r~af~spvgsfa~c~evvlLiYTv~plPLyL~~~~gi~YS 201 (1318)
T KOG3618|consen 139 AWTSLALTLLVCALTL----------ANLTATARPAFLSPVGSFAMCIEVVLLIYTVMPLPLYLSLCLGIAYS 201 (1318)
T ss_pred hHHHHHHHHHHHHHHH----------HHhhhccchhhhCchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1222222222222222 12222223344444445555555666666666555666666555443
No 139
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=49.79 E-value=1.8e+02 Score=31.24 Aligned_cols=63 Identities=19% Similarity=0.105 Sum_probs=35.6
Q ss_pred cccccCcccCCCCCHHHHHHHHHHH-------HHHhCCCCCCC--Ch-HHHHHHHHHHHHHHHhhhcchhhhch
Q 007833 290 HYSALGLSRFENVDVSILKREYRKK-------AMLVHPDKNMG--NE-KAVEAFKKLQNAYEVLFDSFKRKAYD 353 (588)
Q Consensus 290 ~Y~ILGv~~~~~as~~eIKkAYRkl-------alk~HPDkn~~--~p-~A~e~Fk~I~~AYevLsD~~kR~~YD 353 (588)
+++-||++.. ..|.+|+++--+++ ..+.++|.+.. .+ .-++.|+++.+||+.|.+.-..-.|.
T Consensus 84 l~~~l~l~~~-~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~p~l~~~ 156 (318)
T PF12725_consen 84 LSERLGLETE-EYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERYPFLSGY 156 (318)
T ss_pred HHHHcCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccCCC
Confidence 4444555542 35666666555544 33344444311 01 34788999999999998655444433
No 140
>PRK01766 multidrug efflux protein; Reviewed
Probab=48.38 E-value=4e+02 Score=29.05 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhhhccccchhhHHHHHH
Q 007833 139 VVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFIT 180 (588)
Q Consensus 139 iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~ 180 (588)
++.+....+.|+..+....++-+++.|.+-....-+....+.
T Consensus 353 v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 394 (456)
T PRK01766 353 VVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFIT 394 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHH
Confidence 344444445555555555666666667666666655544443
No 141
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=48.10 E-value=16 Score=44.65 Aligned_cols=42 Identities=21% Similarity=0.446 Sum_probs=25.6
Q ss_pred cccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEE
Q 007833 424 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPS 492 (588)
Q Consensus 424 r~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~ 492 (588)
-.|+.|+ |.|.+....+ +.+. ...+|+.|+|.+..++.-.+.
T Consensus 739 G~C~~C~-------G~G~~~~~~~-f~~~-------------------~~~~C~~C~G~R~~~e~l~v~ 780 (943)
T PRK00349 739 GRCEACQ-------GDGVIKIEMH-FLPD-------------------VYVPCDVCKGKRYNRETLEVK 780 (943)
T ss_pred CCCCccc-------ccceEEEEec-cCCC-------------------ccccCccccCccccccceEEE
Confidence 4599998 9998876542 2221 124566777777666654443
No 142
>PRK11383 hypothetical protein; Provisional
Probab=47.49 E-value=2e+02 Score=27.75 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---------------HhhhhhhhHH
Q 007833 94 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILL---------------WLYGSFWTTF 158 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~---------------w~~~~f~~~~ 158 (588)
|.+|..+-|..++. |++-.++.|==|....-==||-.++|+.++|+.+.. -+|+--|+..
T Consensus 9 t~af~~~sw~al~~-----g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~a~ 83 (145)
T PRK11383 9 SPAFSIVSWIALVG-----GIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVF 83 (145)
T ss_pred cHHHHHHHHHHHHH-----HHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHH
Confidence 56777777766543 333334444444433333488889999999998872 5677777643
No 143
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=47.43 E-value=9.8 Score=28.75 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=16.6
Q ss_pred cccccccccCcccee-eeccCccccccccccc
Q 007833 400 RRIACKKCNNFHVWI-ETKKSKASARWCQECN 430 (588)
Q Consensus 400 r~v~C~kC~GsG~~~-~t~k~~~~ar~C~~C~ 430 (588)
+..+|+.|.|+.... .+.+.....-.|..|.
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 456899999887644 6666666677898994
No 144
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=46.94 E-value=18 Score=34.53 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=27.3
Q ss_pred ccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCcee
Q 007833 401 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI 470 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi 470 (588)
...|..|.|.+ -..|..|+ |+=.+.... ....+. -..|+ .|+..|.
T Consensus 99 ~~~C~~Cgg~r-----------fv~C~~C~-------Gs~k~~~~~-~~~~~~----~~rC~-~Cnengl 144 (147)
T cd03031 99 GGVCEGCGGAR-----------FVPCSECN-------GSCKVFAEN-ATAAGG----FLRCP-ECNENGL 144 (147)
T ss_pred CCCCCCCCCcC-----------eEECCCCC-------CcceEEecc-Cccccc----EEECC-CCCcccc
Confidence 34688888864 56799998 766554321 101111 13588 7887764
No 145
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=46.11 E-value=4.5e+02 Score=29.12 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHH
Q 007833 179 ITTMYSIYCAWTYVGWLGLLLAL 201 (588)
Q Consensus 179 ~~~~~~~y~~~~~~gw~g~~l~~ 201 (588)
+....+++.-.+|.||+|+++++
T Consensus 206 ~l~~~~L~lT~SRg~wl~l~~~~ 228 (425)
T TIGR00947 206 GVNALCLLFTYSRGGWLGLLAAL 228 (425)
T ss_pred HHHHHHHHHhcchhhHHHHHHHH
Confidence 34566788889999999876554
No 146
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=46.05 E-value=82 Score=31.17 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=17.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhh
Q 007833 130 FIGFALALVVVALSGTILLWLYG 152 (588)
Q Consensus 130 ~~g~~~~~~iv~~~~~~~~w~~~ 152 (588)
-++++.++.++|+..+++.|+|.
T Consensus 115 ~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 115 SLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred cchhhHHHHHHHHHHHHHHHhee
Confidence 45778888888888888888776
No 147
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=46.05 E-value=1.5e+02 Score=34.07 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 007833 95 TSFFSVIWCSILSVIAMVG 113 (588)
Q Consensus 95 ~~~~~~~w~~~~~~~~~~~ 113 (588)
.++.+++|+.+..+++..+
T Consensus 49 ~~~~~~~~~~~~~~~~l~~ 67 (522)
T PRK09598 49 AMLVVLLFCVNGLLFLLLG 67 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555566666655555554
No 148
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=45.87 E-value=85 Score=31.63 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 007833 103 CSILSVIAMVGMFK 116 (588)
Q Consensus 103 ~~~~~~~~~~~~~~ 116 (588)
-+||.+++.+|++.
T Consensus 16 G~~f~ligaIGLlR 29 (197)
T PRK12585 16 GGLLSILAAIGVIR 29 (197)
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555555554
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.84 E-value=1e+02 Score=29.89 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 007833 118 LMVLVVAALVAFFIG 132 (588)
Q Consensus 118 ~~~~~~~~~~~~~~g 132 (588)
|++.|+++++.+..+
T Consensus 18 li~~gI~~Lv~~~~~ 32 (191)
T PF04156_consen 18 LIASGIAALVLFISG 32 (191)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455555555444433
No 150
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.33 E-value=24 Score=37.22 Aligned_cols=32 Identities=25% Similarity=0.558 Sum_probs=18.8
Q ss_pred ccccccccccCccceeeeccCccccccccccc
Q 007833 399 SRRIACKKCNNFHVWIETKKSKASARWCQECN 430 (588)
Q Consensus 399 sr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~ 430 (588)
-+-++|..|+|+...............|..|+
T Consensus 238 ~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CN 269 (281)
T KOG2824|consen 238 ARFLPCSNCHGSCKVHEEEEDDGGVLRCLECN 269 (281)
T ss_pred cceEecCCCCCceeeeeeccCCCcEEECcccC
Confidence 45567777777753332223445566777776
No 151
>PHA03239 envelope glycoprotein M; Provisional
Probab=45.04 E-value=1.2e+02 Score=34.16 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007833 94 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 149 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w 149 (588)
.+||++-.|-..+..+.+..++-++..+.+=.++.+|+-.-+|..+=.++|..|||
T Consensus 254 gNsF~v~~~~~v~~ai~~F~vL~iiyliv~E~vL~~Yv~vl~G~~lG~lia~~iL~ 309 (429)
T PHA03239 254 ALHFGLDIPKATSGALSMFIVLGIIYLMMAELTVAHYVHVLIGPHLGMIIACAIAG 309 (429)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999
No 152
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=44.58 E-value=13 Score=43.71 Aligned_cols=50 Identities=20% Similarity=0.562 Sum_probs=35.4
Q ss_pred cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCC
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 481 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G 481 (588)
+.|+.|+-. ....++.|+.|+ .-.. ..+|+ .|+-.-..+..-|..|..
T Consensus 2 ~~Cp~Cg~~--------n~~~akFC~~CG--------~~l~---------------~~~Cp-~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFE--------NPNNNRFCQKCG--------TSLT---------------HKPCP-QCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCc--------CCCCCccccccC--------CCCC---------------CCcCC-CCCCCCCcccccccccCC
Confidence 579999753 345678999996 2210 12599 898777778889999987
Q ss_pred ce
Q 007833 482 MR 483 (588)
Q Consensus 482 ~G 483 (588)
.-
T Consensus 50 ~~ 51 (645)
T PRK14559 50 ET 51 (645)
T ss_pred cc
Confidence 53
No 153
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=43.72 E-value=71 Score=33.22 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhh
Q 007833 97 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGF-----------ALALVVVALSGTILLWLYGSFWTTFFVIFLGG 165 (588)
Q Consensus 97 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g 165 (588)
++.+++..+.|++.-...-+-++...+.++++++.|+ ..+.+++.++++.-.-.....|.-..++++||
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~Gg 82 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGMLGVYGPRAATIGFATLLVAVYTMAGPSPGPEALEHALLFLAGG 82 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q ss_pred hcccc
Q 007833 166 LAFKF 170 (588)
Q Consensus 166 ~~~~~ 170 (588)
..|.+
T Consensus 83 lwy~~ 87 (284)
T PF12805_consen 83 LWYLL 87 (284)
T ss_pred HHHHH
No 154
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=43.04 E-value=1.9e+02 Score=33.24 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=43.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 007833 52 KVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVI--AMVGMFKFLMVLVVAALVAF 129 (588)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 129 (588)
..-+-||.....-.+..-.+++...+|.-..--+- .+...+..+=||+++.. -.--+..++....++++++.
T Consensus 331 ~~~~d~~~A~~~alra~la~~~~~l~Wi~t~W~~G------~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~ 404 (650)
T PF04632_consen 331 PLHRDWPLALRNALRAFLAILIAGLFWIATGWPSG------ATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAF 404 (650)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHcCCChh------HHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHH
Confidence 33445667766666777777778888876644432 22233444555555543 22334444555545555554
Q ss_pred HHhhhhHHHHHH
Q 007833 130 FIGFALALVVVA 141 (588)
Q Consensus 130 ~~g~~~~~~iv~ 141 (588)
+..+.+-..+-+
T Consensus 405 ~~~~~vlP~~~~ 416 (650)
T PF04632_consen 405 LYLFFVLPHLDG 416 (650)
T ss_pred HHHHHhhhccCc
Confidence 444443333333
No 155
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=42.24 E-value=15 Score=35.10 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=23.0
Q ss_pred ccccccccccCccceeeecc-Cccccccccccc
Q 007833 399 SRRIACKKCNNFHVWIETKK-SKASARWCQECN 430 (588)
Q Consensus 399 sr~v~C~kC~GsG~~~~t~k-~~~~ar~C~~C~ 430 (588)
.+-++|..|+|++..+.... .....+.|+.|+
T Consensus 108 ~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cn 140 (147)
T cd03031 108 ARFVPCSECNGSCKVFAENATAAGGFLRCPECN 140 (147)
T ss_pred cCeEECCCCCCcceEEeccCcccccEEECCCCC
Confidence 67799999999985443221 134568999998
No 156
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=42.10 E-value=6.8e+02 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=15.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhhh---hhhhHHHHHHh
Q 007833 131 IGFALALVVVALSGTILLWLYG---SFWTTFFVIFL 163 (588)
Q Consensus 131 ~g~~~~~~iv~~~~~~~~w~~~---~f~~~~~~~~~ 163 (588)
+....+++...++.+.++.+++ +.|++.++++-
T Consensus 351 v~~r~~i~~s~~~~i~~~~~~~~~~~~~~~~~~l~s 386 (700)
T COG1480 351 VFLRIAIFSSSMIAIALLYLFGGSYNSEIALIALLS 386 (700)
T ss_pred HHhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 3344444444444555555555 44555444443
No 157
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.81 E-value=15 Score=44.92 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=24.6
Q ss_pred ccccccccCccceeeecc-CcccccccccccccccccCCCeeEEE
Q 007833 401 RIACKKCNNFHVWIETKK-SKASARWCQECNDYHQAKDGDGWVEQ 444 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k-~~~~ar~C~~C~~~h~ak~G~G~Ve~ 444 (588)
.-.|+.|.|.|.....-. .......|+.|+ |+.+...
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~-------G~R~~~e 773 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCK-------GKRYNRE 773 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcC-------CceeChH
Confidence 467999999995332221 223457899999 8886543
No 158
>KOG4800 consensus Neuronal membrane glycoprotein/Myelin proteolipid protein [Function unknown]
Probab=40.70 E-value=1.5e+02 Score=30.65 Aligned_cols=50 Identities=18% Similarity=0.410 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007833 96 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVI 161 (588)
Q Consensus 96 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~ 161 (588)
-+..|=|-..+++++++++++..+- ++...|.+|+.-| +.-.||+|+-+.
T Consensus 57 tv~ii~~~F~~~~~~wI~ifqyvf~----~iaa~f~~yG~~i------------l~egF~ttgA~r 106 (248)
T KOG4800|consen 57 TVLIIEQYFSINIVSWICIFQYVFY----GIAAFFFLYGILI------------LAEGFYTTGAVR 106 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHH------------HhhhhhhhhhHH
Confidence 3556778888999999999987543 3334455553333 334678888776
No 159
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=40.22 E-value=2.4e+02 Score=30.24 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhcchhhhhhccchh
Q 007833 63 HLGHFAKIMLLLSMLW-LDCTIRGIDSFMRMGTTS 96 (588)
Q Consensus 63 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 96 (588)
+....+.+++|++... ..-.+.|-.+.+++|+-+
T Consensus 67 ~~~~~~~l~lL~l~~~~~g~~v~Ga~rWi~lG~~s 101 (358)
T PF01098_consen 67 KILYLGSLILLLLVLFPFGTEVNGARRWIRLGGFS 101 (358)
T ss_pred HHhhHHHHHHHHHHHcccccccCCceEEEEeeeec
Confidence 3345667778887777 899999999999999654
No 160
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=39.83 E-value=12 Score=39.24 Aligned_cols=59 Identities=22% Similarity=0.448 Sum_probs=25.5
Q ss_pred ccccccccCccc-eeeeccC--cccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCce--------
Q 007833 401 RIACKKCNNFHV-WIETKKS--KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSR-------- 469 (588)
Q Consensus 401 ~v~C~kC~GsG~-~~~t~k~--~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsG-------- 469 (588)
...|+-|++.-. -+..+.. +.+--.|.-| |+-|-..+ ..|+ .|+...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C--------~t~W~~~R-------------~~Cp-~Cg~~~~~~l~~~~ 229 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLC--------GTEWRFVR-------------IKCP-YCGNTDHEKLEYFT 229 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT----------EEE--T-------------TS-T-TT---SS-EEE---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCC--------CCeeeecC-------------CCCc-CCCCCCCcceeeEe
Confidence 357999987632 1122222 3456779999 57775432 2588 688643
Q ss_pred -----eecCcccccCCC
Q 007833 470 -----IYNATDWYICQG 481 (588)
Q Consensus 470 -----i~~~~~C~~C~G 481 (588)
-+..+-|..|++
T Consensus 230 ~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 230 VEGEPAYRVEVCESCGS 246 (290)
T ss_dssp -----SEEEEEETTTTE
T ss_pred cCCCCcEEEEECCcccc
Confidence 124456888876
No 161
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=39.53 E-value=2.2e+02 Score=31.90 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=32.7
Q ss_pred hh---hhcchhhhhhc--cchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 007833 80 DC---TIRGIDSFMRM--GTTSFFSVIWCSIL----------SVIAMVGMFKFLMVLVVAALV 127 (588)
Q Consensus 80 ~~---~~~~~~~~~~~--~~~~~~~~~w~~~~----------~~~~~~~~~~~~~~~~~~~~~ 127 (588)
|| ..-|..++.|+ |.+.||++|-...+ .+=.-.+.+|+|+.+++....
T Consensus 64 ~C~~~~c~G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~ 126 (429)
T PF03348_consen 64 DCPSDSCVGYSAVYRVSFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGA 126 (429)
T ss_pred CcchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHhee
Confidence 67 66788888884 77778888777666 233445677887776655443
No 162
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=39.18 E-value=15 Score=39.91 Aligned_cols=32 Identities=31% Similarity=0.797 Sum_probs=25.1
Q ss_pred cccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeE
Q 007833 398 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF 454 (588)
Q Consensus 398 isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~ 454 (588)
.+..+.|..|+|.| |..|+ |.||+|.- +-||+
T Consensus 257 ~Evdv~~~~~~g~g--------------c~~ck-------~~~WiEil----G~Gmv 288 (339)
T PRK00488 257 AEVDVSCFKCGGKG--------------CRVCK-------GTGWLEIL----GCGMV 288 (339)
T ss_pred eEEEEEEeccCCCc--------------ccccC-------CCCceEEe----ccCcc
Confidence 46678899999875 99999 99999972 34564
No 163
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=38.88 E-value=3.4e+02 Score=28.33 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007833 63 HLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSIL----SVIAMVGMFKFLMVLVVAALVAFFIGFALALV 138 (588)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 138 (588)
+...+..++.++..-|+-|...-++.++==.+.+.+..+|-.+- ---..+-+..+++.++++++++..+|...|..
T Consensus 12 ~~~~~~~~~~~l~~Wq~~~~~~~~~~~~LP~P~~V~~~~~~~~~~g~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~ 91 (258)
T COG0600 12 ALLPLLGLLALLALWQLAARLGLIPPFILPSPSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLS 91 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45556666666666666666666788888888888888777664 23345667788999999998888888877643
Q ss_pred ------------------HHHHHHHHHHHhhhhhhh
Q 007833 139 ------------------VVALSGTILLWLYGSFWT 156 (588)
Q Consensus 139 ------------------iv~~~~~~~~w~~~~f~~ 156 (588)
.+++..++|+|+=-.-+-
T Consensus 92 ~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s 127 (258)
T COG0600 92 RLLERLLDPLVQVLRPIPPLALAPLAILWFGIGETS 127 (258)
T ss_pred HHHHHHHhHHHHHHhcCCHHHHHHHHHHHHhCCcch
Confidence 467888899997544443
No 164
>PRK10189 MATE family multidrug exporter; Provisional
Probab=38.84 E-value=6e+02 Score=28.39 Aligned_cols=27 Identities=11% Similarity=-0.215 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHhhhhccccchhhHHHH
Q 007833 152 GSFWTTFFVIFLGGLAFKFTHERLALF 178 (588)
Q Consensus 152 ~~f~~~~~~~~~~g~~~~~~~~~~~~~ 178 (588)
.++.+.++.++..|.+-...+-+...+
T Consensus 386 ~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 386 LFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 333444444455555555555555443
No 165
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=38.80 E-value=22 Score=38.08 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=16.4
Q ss_pred cccccccccCccc--ee-eeccCcccccccccc
Q 007833 400 RRIACKKCNNFHV--WI-ETKKSKASARWCQEC 429 (588)
Q Consensus 400 r~v~C~kC~GsG~--~~-~t~k~~~~ar~C~~C 429 (588)
.+..|+.|++.-. .+ ..+..+.+--.|..|
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC 218 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLC 218 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCC
Confidence 4556888877631 11 112234455668888
No 166
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=37.57 E-value=18 Score=47.07 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=15.5
Q ss_pred cccccCCCceeccceeEEEEE
Q 007833 474 TDWYICQGMRCPANTHKPSFH 494 (588)
Q Consensus 474 ~~C~~C~G~G~~~~t~~v~V~ 494 (588)
.+|..|+|.++.+++-.+.++
T Consensus 1631 ~~C~~C~G~R~~~e~L~v~~~ 1651 (1809)
T PRK00635 1631 RPCPTCSGFRIQPLAQEVVYE 1651 (1809)
T ss_pred cCCCCCCCcCCCHHHHhheeC
Confidence 567888999888887655554
No 167
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=37.54 E-value=50 Score=34.86 Aligned_cols=28 Identities=21% Similarity=0.512 Sum_probs=17.7
Q ss_pred ccccccccCccceeeeccCccccccccccc
Q 007833 401 RIACKKCNNFHVWIETKKSKASARWCQECN 430 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~ 430 (588)
..+|..|++.= ....-.+....+|+.|+
T Consensus 245 GepC~~CGt~I--~k~~~~gR~t~~CP~CQ 272 (273)
T COG0266 245 GEPCRRCGTPI--EKIKLGGRSTFYCPVCQ 272 (273)
T ss_pred CCCCCccCCEe--EEEEEcCCcCEeCCCCC
Confidence 45688898752 22233445677888886
No 168
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=37.52 E-value=49 Score=35.32 Aligned_cols=17 Identities=24% Similarity=0.800 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 007833 96 SFFSVIWCSILSVIAMV 112 (588)
Q Consensus 96 ~~~~~~w~~~~~~~~~~ 112 (588)
-||+||||.++|-..|+
T Consensus 72 I~yivlw~~l~Stl~l~ 88 (308)
T PF14800_consen 72 IFYIVLWANLYSTLQLF 88 (308)
T ss_pred HHHHHHHHHHHccchhh
Confidence 46899999999976665
No 169
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=36.63 E-value=34 Score=40.82 Aligned_cols=54 Identities=15% Similarity=0.343 Sum_probs=35.2
Q ss_pred CcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCccc
Q 007833 397 GESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDW 476 (588)
Q Consensus 397 ~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C 476 (588)
++...+.|..|+- ...|+.|+ .+.+.+.. - -+..|- .|+-. ......|
T Consensus 431 Gys~~l~C~~Cg~-------------v~~Cp~Cd---------~~lt~H~~--~------~~L~CH-~Cg~~-~~~p~~C 478 (730)
T COG1198 431 GYAPLLLCRDCGY-------------IAECPNCD---------SPLTLHKA--T------GQLRCH-YCGYQ-EPIPQSC 478 (730)
T ss_pred CccceeecccCCC-------------cccCCCCC---------cceEEecC--C------CeeEeC-CCCCC-CCCCCCC
Confidence 3455789999974 34799996 33333211 1 123588 58665 5567899
Q ss_pred ccCCCc
Q 007833 477 YICQGM 482 (588)
Q Consensus 477 ~~C~G~ 482 (588)
+.|.+.
T Consensus 479 p~Cgs~ 484 (730)
T COG1198 479 PECGSE 484 (730)
T ss_pred CCCCCC
Confidence 999998
No 170
>PRK10726 hypothetical protein; Provisional
Probab=35.79 E-value=1.6e+02 Score=26.81 Aligned_cols=63 Identities=21% Similarity=0.412 Sum_probs=35.6
Q ss_pred hhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 007833 89 FMRMGTTS--FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 152 (588)
Q Consensus 89 ~~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~ 152 (588)
|+=.|++. ||+-.|=.||.+.-.+-++-+++..-.-+=+..-+ ..-++.|+++|+.+.+|+.|
T Consensus 40 fl~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~~s~-l~t~l~V~~lFwllF~~L~G 104 (105)
T PRK10726 40 FLIYGSNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKLLYSI-LFTLLTVGCLFWLLFSWLLG 104 (105)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 34456554 45566989988766554444444333333332222 33356777888888877654
No 171
>PRK10209 acid-resistance membrane protein; Provisional
Probab=35.59 E-value=4.2e+02 Score=26.09 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 007833 117 FLMVLVVAALV 127 (588)
Q Consensus 117 ~~~~~~~~~~~ 127 (588)
++++-|+..++
T Consensus 56 ~ll~~Gi~~l~ 66 (190)
T PRK10209 56 LLICSGIALIV 66 (190)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 172
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=35.24 E-value=4.1e+02 Score=28.40 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHhhhc
Q 007833 178 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQ 221 (588)
Q Consensus 178 ~~~~~~~~y~~~~~~gw~g~~l~~nlsfls~diL~~~l~~~~e~ 221 (588)
.++++.++..--.-+|..|++++.=+.-+--++++....+...+
T Consensus 304 p~~ilisll~g~~l~G~~G~ila~pl~~~~k~~~~~~~~~~~~~ 347 (355)
T COG0628 304 PLVILLSLLGGGSLFGFVGLILAPPLAAVLKVLLRAWLEEELLA 347 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667888899999998877676777766644433
No 173
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.12 E-value=8.7e+02 Score=29.17 Aligned_cols=22 Identities=23% Similarity=0.393 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007833 98 FSVIWCSILSVIAMVGMFKFLM 119 (588)
Q Consensus 98 ~~~~w~~~~~~~~~~~~~~~~~ 119 (588)
|+|+..|+.-..=++|++.+-+
T Consensus 75 ~~~~~~~~~~~~d~~~~~~~p~ 96 (697)
T PF09726_consen 75 FSVFFVCIAFTSDLICLFFIPV 96 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777888877644
No 174
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.78 E-value=26 Score=43.79 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=35.3
Q ss_pred ccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec---Ccccc
Q 007833 401 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN---ATDWY 477 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~---~~~C~ 477 (588)
...|++|+... ....|+.|+ .. . .+ ...|+ .|+..-..+ ...|+
T Consensus 667 ~rkCPkCG~~t----------~~~fCP~CG-------s~----t--e~---------vy~CP-sCGaev~~des~a~~CP 713 (1337)
T PRK14714 667 RRRCPSCGTET----------YENRCPDCG-------TH----T--EP---------VYVCP-DCGAEVPPDESGRVECP 713 (1337)
T ss_pred EEECCCCCCcc----------ccccCcccC-------Cc----C--CC---------ceeCc-cCCCccCCCccccccCC
Confidence 46899998642 123899997 11 0 00 11588 897632222 45899
Q ss_pred cCCCceeccceeEEE
Q 007833 478 ICQGMRCPANTHKPS 492 (588)
Q Consensus 478 ~C~G~G~~~~t~~v~ 492 (588)
.|...-......++.
T Consensus 714 ~CGtplv~~~~~~i~ 728 (1337)
T PRK14714 714 RCDVELTPYQRRTIN 728 (1337)
T ss_pred CCCCcccccceEEec
Confidence 999876655555443
No 175
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=34.75 E-value=4e+02 Score=32.48 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=6.2
Q ss_pred hhhhhhhhHH
Q 007833 189 WTYVGWLGLL 198 (588)
Q Consensus 189 ~~~~gw~g~~ 198 (588)
+.++||+|..
T Consensus 361 rlFigWFGpR 370 (810)
T TIGR00844 361 AMFIGHFGPI 370 (810)
T ss_pred HHHheeeccc
Confidence 4467777654
No 176
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=34.37 E-value=79 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccc
Q 007833 135 LALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 171 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~ 171 (588)
-.+-++++.++-++||+|..=..-...+++|+...|-
T Consensus 72 ~~iA~LAVI~vG~swmfGrldl~~a~~Vv~GI~iVFG 108 (120)
T PRK13857 72 QSLAVLGIVAIGISWMFGRASLGLVAGVVGGIVIMFG 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhheec
Confidence 3455778888899999998766666677777665554
No 177
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=34.28 E-value=2.3e+02 Score=24.33 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007833 106 LSVIAMVGMFKFLMVLVVAALVAFFIGFA 134 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 134 (588)
+|+.+.+| |+==+|++++++..|+|..
T Consensus 10 lsIlcVSg--YigQVlg~~savSsf~gm~ 36 (80)
T PF10810_consen 10 LSILCVSG--YIGQVLGVASAVSSFFGMV 36 (80)
T ss_pred HHHHHhhh--HHHHHHHHHHHHHHHHHHH
Confidence 34444444 5556789999999888753
No 178
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.23 E-value=4.9e+02 Score=31.19 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 007833 98 FSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY 151 (588)
Q Consensus 98 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~ 151 (588)
|=.+|-+.|.+-+++=-++.= |+| .-++|+..++-.=+|-+|=|-+-|+|
T Consensus 51 ~e~~~p~wl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~d~~~~~~~p~~~~~ 100 (697)
T PF09726_consen 51 FEYLWPFWLLLRSVYDSFKYQ---GLA-FSVFFVCIAFTSDLICLFFIPVHWLF 100 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhh---hhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887666543 222 33344444444444444444455554
No 179
>PRK14397 membrane protein; Provisional
Probab=33.46 E-value=3.2e+02 Score=28.17 Aligned_cols=10 Identities=0% Similarity=0.232 Sum_probs=4.4
Q ss_pred HHHHHHhhhc
Q 007833 212 IFFLKSKVNQ 221 (588)
Q Consensus 212 ~~~l~~~~e~ 221 (588)
.+-+++|+..
T Consensus 173 i~rHr~NI~R 182 (222)
T PRK14397 173 YWSHRENIGR 182 (222)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 180
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=33.10 E-value=4.5e+02 Score=29.18 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhH
Q 007833 94 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTT 157 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~ 157 (588)
-+||++-.|-..+..+.+..++-++..+.+=.++..|+---+|..+=.++|..+||+-.-=+-.
T Consensus 231 gNsF~v~~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv~v~~G~~~G~lia~~~l~~p~~~Y~~ 294 (374)
T PF01528_consen 231 GNSFYVSVSDMVFGAINVFAVLSIIYLIVIEVVLARYVKVQFGPHLGTLIACGILGLPAIRYEN 294 (374)
T ss_pred hcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999888889999999999999999998888888888875544443
No 181
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=32.62 E-value=3e+02 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.292 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhh
Q 007833 139 VVALSGTILLWLYGSFWTTFFVIFLG 164 (588)
Q Consensus 139 iv~~~~~~~~w~~~~f~~~~~~~~~~ 164 (588)
++.+..-+++.-+..|+++.++++++
T Consensus 79 ~~~~~~y~~~~~~lGf~~at~~~~~~ 104 (141)
T PF07331_consen 79 LGLLVLYVLLLEYLGFIIATFLFLFA 104 (141)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333334444455666655554433
No 182
>COG5547 Small integral membrane protein [Function unknown]
Probab=32.06 E-value=65 Score=26.46 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=14.7
Q ss_pred HHHhhhhhhhHHHHHHhhh
Q 007833 147 LLWLYGSFWTTFFVIFLGG 165 (588)
Q Consensus 147 ~~w~~~~f~~~~~~~~~~g 165 (588)
||.+...||=|.+++++++
T Consensus 22 ili~t~GfwKtilviil~~ 40 (62)
T COG5547 22 ILILTFGFWKTILVIILIL 40 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556778999988887766
No 183
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=31.83 E-value=6.2e+02 Score=26.54 Aligned_cols=132 Identities=12% Similarity=-0.002 Sum_probs=60.6
Q ss_pred HHHHHHHh-------cCch--HHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcch----------
Q 007833 26 AAIELLER-------QSPM--LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGI---------- 86 (588)
Q Consensus 26 ~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 86 (588)
+.-.|+|+ |..+ ..+.+.=.-|-+...+- --..|+-.+||+..=++.+ +.||
T Consensus 17 ~~~~~~~~~l~~~~g~~dlLK~IAli~M~iDHi~~~~~----~~~~~l~~iGRlAfPiFaf-----VeGfNla~hT~~r~ 87 (248)
T PRK13706 17 RTDTWLQSLLVWSPGQRDIIKTVALVLMVLDHINRILH----LDQEWMFLAGRGAFPLFAL-----VWGLNLSRHAHIRQ 87 (248)
T ss_pred hhhhhHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHH-----HHHHhhccccchHH
Confidence 44556665 4444 33333334455544332 1224677888888777765 7887
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhhhhhHHHHHHh
Q 007833 87 DSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILL---WLYGSFWTTFFVIFL 163 (588)
Q Consensus 87 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~---w~~~~f~~~~~~~~~ 163 (588)
.-..||.--++++-+=-.+. .+...-..++..+.++..+...+-.....+.++++.+.++ ++.+..+..++++++
T Consensus 88 kY~~RL~ifAlIseipf~l~--~~~~~~~NI~fTLalgl~~l~~~e~~~~~~~~~~il~~~l~~~~~~~DYg~~gvl~il 165 (248)
T PRK13706 88 PAINRLWGWGIIAQFAYYLA--GFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLA 165 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcccccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34566655444332100000 1111223555566666555555533321111111111122 233445555666666
Q ss_pred hhhcc
Q 007833 164 GGLAF 168 (588)
Q Consensus 164 ~g~~~ 168 (588)
+=+.|
T Consensus 166 ~fy~~ 170 (248)
T PRK13706 166 VSHRL 170 (248)
T ss_pred HHHHH
Confidence 65543
No 184
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=31.76 E-value=1.8e+02 Score=31.03 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 007833 135 LALVVVALSGTILLWLYGS 153 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~~ 153 (588)
..++++|+.|+++.+.|..
T Consensus 114 ~~~l~igl~g~~~~~~Yt~ 132 (317)
T PRK13387 114 WLLLVIGLICFAIGILYTG 132 (317)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 4468889999999999864
No 185
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=31.70 E-value=15 Score=32.64 Aligned_cols=60 Identities=23% Similarity=0.440 Sum_probs=39.0
Q ss_pred ccccccccccCccceeee--ccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCccc
Q 007833 399 SRRIACKKCNNFHVWIET--KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDW 476 (588)
Q Consensus 399 sr~v~C~kC~GsG~~~~t--~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C 476 (588)
..-..|.+|+|.- -++. -++.+..+.|.+|+ -| +.+..|- .|++-|+.+...|
T Consensus 18 ~~G~LCEkCDgkC-~ICDS~VRP~tlVRiC~eC~--------~G---------------s~q~~ci-ic~~~gV~d~~yc 72 (110)
T KOG1705|consen 18 AIGRLCEKCDGKC-VICDSYVRPCTLVRICDECN--------YG---------------SYQGRCV-ICGGVGVSDAYYC 72 (110)
T ss_pred hhhhhHHhcCCcc-cccccccccceeeeeehhcC--------Cc---------------cccCceE-EecCCcccchHHH
Confidence 4445566666642 1111 35667778898886 33 1223576 8999999999999
Q ss_pred ccCCCce
Q 007833 477 YICQGMR 483 (588)
Q Consensus 477 ~~C~G~G 483 (588)
..|-.++
T Consensus 73 ~ectr~e 79 (110)
T KOG1705|consen 73 KECTRQE 79 (110)
T ss_pred HHHHhhc
Confidence 9998655
No 186
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=31.63 E-value=2.7e+02 Score=28.82 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=19.2
Q ss_pred hhhhhhhhhhHHHHHh--hhhhhHHHHHHHHH
Q 007833 187 CAWTYVGWLGLLLALN--LSFVSSDALIFFLK 216 (588)
Q Consensus 187 ~~~~~~gw~g~~l~~n--lsfls~diL~~~l~ 216 (588)
-.|.+.||+|....+= ++++-+-+.++.++
T Consensus 124 ~~R~~eG~vGi~s~iWa~l~~l~~~~~D~~v~ 155 (232)
T PF10329_consen 124 YTRHEEGWVGIASVIWAFLSSLWGILADRYVE 155 (232)
T ss_pred hHHhHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466889999876553 34555656666665
No 187
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.23 E-value=4.8e+02 Score=31.42 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHhhhhhhh
Q 007833 173 ERLALFITTMYSIYCAWTYV 192 (588)
Q Consensus 173 ~~~~~~~~~~~~~y~~~~~~ 192 (588)
+|+..||..=.+||.+..++
T Consensus 259 ar~~~LI~iP~~iYl~~F~v 278 (723)
T KOG3359|consen 259 ARLFFLIGIPFLIYLLFFYV 278 (723)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888887777888777664
No 188
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.14 E-value=1.4e+02 Score=32.92 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=17.7
Q ss_pred eecCcccccCCCceeccceeEEEEE
Q 007833 470 IYNATDWYICQGMRCPANTHKPSFH 494 (588)
Q Consensus 470 i~~~~~C~~C~G~G~~~~t~~v~V~ 494 (588)
.+.-..|..|......+.-|+++|.
T Consensus 462 Fypyp~ctE~ADrELLPsfHEvSVy 486 (556)
T KOG3807|consen 462 FYPYPSCTETADRELLPSFHEVSVY 486 (556)
T ss_pred ccCCcchhhhcchhhccchhhcccc
Confidence 4455667777777777887877765
No 189
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=30.78 E-value=4.3e+02 Score=27.37 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhhhhcchhhhh
Q 007833 70 IMLLLSMLWLDCTIRGIDSFM 90 (588)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ 90 (588)
++......|-|..=|++|...
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~ 66 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKM 66 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCC
Confidence 444455666666668999864
No 190
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=30.66 E-value=21 Score=29.86 Aligned_cols=40 Identities=25% Similarity=0.563 Sum_probs=20.8
Q ss_pred ccccccCccceeeecc---CcccccccccccccccccCCCeeE
Q 007833 403 ACKKCNNFHVWIETKK---SKASARWCQECNDYHQAKDGDGWV 442 (588)
Q Consensus 403 ~C~kC~GsG~~~~t~k---~~~~ar~C~~C~~~h~ak~G~G~V 442 (588)
.|..|+..-....... .+.-...|+.|+..|-.-|.-||.
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlIaDnLg~f 48 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLIADNLGWF 48 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES--SS-SG
T ss_pred EcCCCCCccceeeCHHHHhCCeEEEECCCCcceeeehhhhccc
Confidence 5888866532221111 445567899998888888888775
No 191
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=30.48 E-value=7e+02 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=14.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhh
Q 007833 180 TTMYSIYCAWTYVGWLGLLLALNLS 204 (588)
Q Consensus 180 ~~~~~~y~~~~~~gw~g~~l~~nls 204 (588)
+++.+++---...|-+|+++++=++
T Consensus 294 ~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 294 VVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444444444455666888887665
No 192
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=30.37 E-value=2e+02 Score=29.75 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=11.6
Q ss_pred HHHHHhhhhhhhhhhhHHHH
Q 007833 181 TMYSIYCAWTYVGWLGLLLA 200 (588)
Q Consensus 181 ~~~~~y~~~~~~gw~g~~l~ 200 (588)
.+|+.|.+- |+-|+|+++.
T Consensus 201 lwyi~Y~vP-Y~~~ig~~i~ 219 (230)
T PF03904_consen 201 LWYIAYLVP-YIFAIGLFIY 219 (230)
T ss_pred HHHHHHhhH-HHHHHHHHHH
Confidence 456666665 4457777654
No 193
>PRK11827 hypothetical protein; Provisional
Probab=30.30 E-value=34 Score=28.12 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred ccccccccCccceeeeccCcccccccccccccccccCCC
Q 007833 401 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 439 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~ 439 (588)
-..|+.|+|.= ........-.|..|+...+.+||-
T Consensus 8 ILaCP~ckg~L----~~~~~~~~Lic~~~~laYPI~dgI 42 (60)
T PRK11827 8 IIACPVCNGKL----WYNQEKQELICKLDNLAFPLRDGI 42 (60)
T ss_pred heECCCCCCcC----eEcCCCCeEECCccCeeccccCCc
Confidence 35799999862 112233457799999888888664
No 194
>PLN02922 prenyltransferase
Probab=30.26 E-value=97 Score=33.18 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=33.8
Q ss_pred hhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhh
Q 007833 82 TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI-GFALALVVVALSGTILLWLYG 152 (588)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~iv~~~~~~~~w~~~ 152 (588)
..||.|..-|-|+.-+.- |--.+..+..+++.+++.+.+...+ .-.+.++++|+.|+++-|+|.
T Consensus 76 ~~~G~D~~~~~~~~~~~~-------s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt 140 (315)
T PLN02922 76 ADTGVDKNKKESVVNLVG-------SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ 140 (315)
T ss_pred hccCcCcccCCCCCCccc-------CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 589999877766433321 2222222222222222222222211 123668888899999988886
No 195
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=30.19 E-value=1.2e+02 Score=25.99 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=11.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 007833 127 VAFFIGFALALVVVALSGTILLW 149 (588)
Q Consensus 127 ~~~~~g~~~~~~iv~~~~~~~~w 149 (588)
+....|...+...++++|.++||
T Consensus 54 ~llv~G~~~~~~~~~v~G~~v~~ 76 (82)
T PF11239_consen 54 ALLVAGVVLSQPPLGVAGFVVMV 76 (82)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 33334444444446666655544
No 196
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=30.11 E-value=5.4e+02 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=20.6
Q ss_pred HHHHHhhhh-hhcchhhhhhccchhHHHHHHHHHHHHHHH
Q 007833 73 LLSMLWLDC-TIRGIDSFMRMGTTSFFSVIWCSILSVIAM 111 (588)
Q Consensus 73 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 111 (588)
+.+..|+-| ..+.-.+-.++.--..|.+.....++.+..
T Consensus 51 l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~ 90 (212)
T cd06181 51 LGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILS 90 (212)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 444445555665555566655555555433
No 197
>PF13994 PgaD: PgaD-like protein
Probab=29.66 E-value=1.9e+02 Score=27.08 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=15.7
Q ss_pred hccchhHHHHHHHHHHHHHHH
Q 007833 91 RMGTTSFFSVIWCSILSVIAM 111 (588)
Q Consensus 91 ~~~~~~~~~~~w~~~~~~~~~ 111 (588)
|+....+-++.|+.|+.++..
T Consensus 14 r~~~~~lT~~~W~~~~yL~~p 34 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWRP 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777888899888776543
No 198
>PHA03242 envelope glycoprotein M; Provisional
Probab=29.56 E-value=8.7e+02 Score=27.49 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHhh
Q 007833 94 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLG 164 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~ 164 (588)
.+||++-.|-..+..+.+..++-++..+.+=.++..|+-.-+|..+=.++|..|||+-.-=++.-+...+.
T Consensus 245 gNsF~v~~~~~v~~ai~~F~vL~ii~liv~E~vL~~Yv~vl~G~~lG~lia~~~l~~p~~rY~~~~~~~v~ 315 (428)
T PHA03242 245 ANNFHLSLPGTLVCLTAVFALLVVLLLVVVEGVLSHYVRVLPGPHLGALVAAGIVGVAAHRYFTQGYYVAE 315 (428)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 47899999999999999999999999999999999999999999999999999999877666555554443
No 199
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=29.50 E-value=4.6e+02 Score=27.66 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHH
Q 007833 54 QQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVI 101 (588)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (588)
.+.|-++...+.|+|-+=++.=++|+=-. |-.---++|+.-|+.+.
T Consensus 133 ~q~WRl~T~~flH~~~~Hl~fNml~l~~l--G~~iE~~~G~~~~l~l~ 178 (276)
T PRK10907 133 FELWRYFTHALLHFSLLHILFNLLWWWYL--GGAVEKRLGSGKLIVIT 178 (276)
T ss_pred CCcHHHHhHHHHhCCHHHHHHHHHHHHHH--HHHHHHHHChHHHHHHH
Confidence 46688888888888876666555554322 22222466776665543
No 200
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=28.52 E-value=3.9e+02 Score=28.16 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 007833 136 ALVVVALSGTILLWLYGS 153 (588)
Q Consensus 136 ~~~iv~~~~~~~~w~~~~ 153 (588)
.++++|+.|+++.|.|..
T Consensus 110 ~~l~lg~~~~~~~~~Yt~ 127 (284)
T TIGR00751 110 WFIALGALCIAAAITYTV 127 (284)
T ss_pred HHHHHHHHHHHHhHhhcC
Confidence 467889999999999863
No 201
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=28.51 E-value=27 Score=36.12 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=17.3
Q ss_pred cCcccccCCCceeccceeE--EEEEeC
Q 007833 472 NATDWYICQGMRCPANTHK--PSFHVN 496 (588)
Q Consensus 472 ~~~~C~~C~G~G~~~~t~~--v~V~Vp 496 (588)
+...|++|+|.|++|...+ +-==||
T Consensus 37 ~~vtCPTCqGtGrIP~eqe~qLVALIP 63 (238)
T PF07092_consen 37 DSVTCPTCQGTGRIPREQENQLVALIP 63 (238)
T ss_pred CCCcCCCCcCCccCCccchhcEEEEEe
Confidence 5568999999998775543 333466
No 202
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=28.39 E-value=8.5e+02 Score=30.82 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhhhhcchhhh--hhccchhHHHHHHHHHHHHHH
Q 007833 58 PVALNHLGHFAKIMLLLSML-----WLDCTIRGIDSF--MRMGTTSFFSVIWCSILSVIA 110 (588)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~w~~~~~~~~ 110 (588)
|-+..|++.+-.++.|++.+ |.-=.+|++... ..+.. ++++|-.+|-+.|
T Consensus 11 p~~~~~~~~~~~~~~l~~~v~p~~~~~~~~~~~~~~~~~~~~~~---~sl~~g~~Ll~lA 67 (1094)
T PRK02983 11 PAAAGWTVGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPD---TSLAWAFVLALLA 67 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhcChhhhCCCc---hHHHHHHHHHHHH
Confidence 66777777777777666655 333444555332 22333 5555555555544
No 203
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=28.20 E-value=1e+03 Score=29.71 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=5.1
Q ss_pred hhhhHHHHHhhh
Q 007833 193 GWLGLLLALNLS 204 (588)
Q Consensus 193 gw~g~~l~~nls 204 (588)
-|+.+++.+=++
T Consensus 1022 f~l~~ll~~~~~ 1033 (1057)
T TIGR01652 1022 FWLVLLVIVLIS 1033 (1057)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 204
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.05 E-value=44 Score=35.81 Aligned_cols=17 Identities=6% Similarity=-0.316 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhCCCCC
Q 007833 307 LKREYRKKAMLVHPDKN 323 (588)
Q Consensus 307 IKkAYRklalk~HPDkn 323 (588)
-++...+|..++.|+.+
T Consensus 100 w~~~l~~LL~~l~~~~~ 116 (305)
T TIGR01562 100 WLPWLDALLAGYPAPAN 116 (305)
T ss_pred HHHHHHHHHHHhccccc
Confidence 36666677777777743
No 205
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=27.94 E-value=1.6e+02 Score=27.18 Aligned_cols=7 Identities=29% Similarity=0.225 Sum_probs=3.2
Q ss_pred HHHHhhh
Q 007833 182 MYSIYCA 188 (588)
Q Consensus 182 ~~~~y~~ 188 (588)
++.+||+
T Consensus 94 ~~i~y~a 100 (115)
T PF05915_consen 94 TRIAYYA 100 (115)
T ss_pred HHHHHHH
Confidence 4444544
No 206
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=27.87 E-value=35 Score=40.20 Aligned_cols=78 Identities=21% Similarity=0.501 Sum_probs=47.5
Q ss_pred ccccccCccceeeeccCcccccccccccccccc---cCCCeeEEEeecccccee------------EE-----EEEeccc
Q 007833 403 ACKKCNNFHVWIETKKSKASARWCQECNDYHQA---KDGDGWVEQSSEPLFFGI------------FQ-----KVDVPCA 462 (588)
Q Consensus 403 ~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~a---k~G~G~Ve~~~q~~~~Gm------------~q-----q~q~~C~ 462 (588)
-|.+|.-. .......|.-|.....| -|.-||..+.-.-..|.. +| .+..+|+
T Consensus 50 fCrKCesq--------eraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCY 121 (900)
T KOG0956|consen 50 FCRKCESQ--------ERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCY 121 (900)
T ss_pred hhhhhhhh--------hhhccceeecccCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhcceee
Confidence 57777643 23445678888633333 246688765433222211 11 1245797
Q ss_pred ccCCCce---eecCcccccCCCceecccee
Q 007833 463 YVCANSR---IYNATDWYICQGMRCPANTH 489 (588)
Q Consensus 463 y~C~GsG---i~~~~~C~~C~G~G~~~~t~ 489 (588)
.|.+.| ...+--|-.|+..+|++.-|
T Consensus 122 -IC~E~GrpnkA~~GACMtCNKs~CkqaFH 150 (900)
T KOG0956|consen 122 -ICNEEGRPNKAAKGACMTCNKSGCKQAFH 150 (900)
T ss_pred -eecccCCccccccccceecccccchhhhh
Confidence 999876 44678899999999876554
No 207
>PRK09459 pspG phage shock protein G; Reviewed
Probab=27.87 E-value=3.6e+02 Score=23.37 Aligned_cols=9 Identities=11% Similarity=0.818 Sum_probs=5.0
Q ss_pred HHHHHhhhh
Q 007833 145 TILLWLYGS 153 (588)
Q Consensus 145 ~~~~w~~~~ 153 (588)
++..|+|-+
T Consensus 55 ~v~vW~~r~ 63 (76)
T PRK09459 55 VVVVWVIRA 63 (76)
T ss_pred HHHHHHHHH
Confidence 455566654
No 208
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=27.83 E-value=43 Score=24.74 Aligned_cols=13 Identities=15% Similarity=0.631 Sum_probs=8.3
Q ss_pred ccccccccccCcc
Q 007833 399 SRRIACKKCNNFH 411 (588)
Q Consensus 399 sr~v~C~kC~GsG 411 (588)
+..+.|+.|+.+.
T Consensus 3 ~i~v~CP~C~s~~ 15 (36)
T PF03811_consen 3 KIDVHCPRCQSTE 15 (36)
T ss_pred cEeeeCCCCCCCC
Confidence 3456777777665
No 209
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.69 E-value=40 Score=41.36 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=17.6
Q ss_pred cccccCCCceeecCcccccCCCceeccceeEE
Q 007833 460 PCAYVCANSRIYNATDWYICQGMRCPANTHKP 491 (588)
Q Consensus 460 ~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v 491 (588)
.|+ .|.-. .....|+.|.-.-......++
T Consensus 653 fCP-~CG~~--~~~y~CPKCG~El~~~s~~~i 681 (1121)
T PRK04023 653 RCP-RCGIE--VEEDECEKCGREPTPYSKRKI 681 (1121)
T ss_pred eCc-cccCc--CCCCcCCCCCCCCCccceEEe
Confidence 488 78432 234679999887654444433
No 210
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=27.61 E-value=3.1e+02 Score=28.00 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=58.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccc
Q 007833 92 MGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 171 (588)
Q Consensus 92 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~ 171 (588)
.+...+..|.|-++.+- .+.++-.++.-..-+.+.++-++....+|+-++--.+ ++=.++.|+.
T Consensus 16 ~ld~~l~~iv~~tl~vS--l~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~----------s~PTVlvGLl---- 79 (227)
T COG4662 16 SLDPELIGIVATTLYVS--LISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLL----------SMPTVLVGLL---- 79 (227)
T ss_pred hCCHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHHhcCchHHHHHHHHHHhh----------cccHHHHHHH----
Confidence 35667888888877543 3333334444444455556666666666665544433 3444455533
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHh-----hhhhhHHHHHHHHHHhhhc
Q 007833 172 HERLALFITTMYSIYCAWTYVGWLGLLLALN-----LSFVSSDALIFFLKSKVNQ 221 (588)
Q Consensus 172 ~~~~~~~~~~~~~~y~~~~~~gw~g~~l~~n-----lsfls~diL~~~l~~~~e~ 221 (588)
+|.+-+=.--.||+|+++..- =++|-=-+.+.|.-.-.|+
T Consensus 80 ----------LylLlSr~GPlG~f~LLfT~~amILGq~iL~lPlvia~~l~ale~ 124 (227)
T COG4662 80 ----------LYLLLSRSGPLGWFNLLFTQDAMILGQAILILPLVIAFVLTALES 124 (227)
T ss_pred ----------HHHHHhccCCCccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777889998876432 2344333444444444444
No 211
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=27.55 E-value=1.4e+02 Score=28.88 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHH
Q 007833 108 VIAMVGMFKFL--MVLVVAALVAFFIGFALALVVVAL 142 (588)
Q Consensus 108 ~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~iv~~ 142 (588)
+...+-++|++ +.|.++++...++++.=.+-|+++
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~ 110 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGA 110 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33445556664 455566666777777766665544
No 212
>PRK14299 chaperone protein DnaJ; Provisional
Probab=27.43 E-value=20 Score=37.71 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=32.4
Q ss_pred eeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhcc
Q 007833 488 THKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAGL 544 (588)
Q Consensus 488 t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~~ 544 (588)
.+.++|+||+|+.+++ .+.+|.|.. + +|++..+ .+|+.|.+ |.+|+..+-
T Consensus 155 g~~~~V~Ip~G~~~G~~ir~~g~G~~--~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~ 219 (291)
T PRK14299 155 GERLSVRIPPGVREGQVIRLAGKGRQ--G-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGK 219 (291)
T ss_pred CEEEEEecCCCcCCCcEEEECCCCCC--C-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCE
Confidence 3689999999998885 355554442 1 3555544 67777776 466666554
No 213
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=27.40 E-value=3.7e+02 Score=29.07 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=9.4
Q ss_pred chhHHHHHHHHHHHHHH
Q 007833 94 TTSFFSVIWCSILSVIA 110 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~ 110 (588)
.-+++.-+|..++.+..
T Consensus 99 ~d~~~~g~~~~~~~~~~ 115 (366)
T PRK10245 99 TDAVLAGMWVGVMGVNV 115 (366)
T ss_pred HHHHHHhHHHHHHcccc
Confidence 34556666776654443
No 214
>PRK01637 hypothetical protein; Reviewed
Probab=27.36 E-value=4.5e+02 Score=27.35 Aligned_cols=16 Identities=38% Similarity=0.958 Sum_probs=7.8
Q ss_pred HhhhhhhhhhhhHHHH
Q 007833 185 IYCAWTYVGWLGLLLA 200 (588)
Q Consensus 185 ~y~~~~~~gw~g~~l~ 200 (588)
+..+|.|..|.-+++.
T Consensus 244 ~lllWlyl~~~ilL~G 259 (286)
T PRK01637 244 ILFVWVYLSWCIVLLG 259 (286)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555444443
No 215
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=27.34 E-value=21 Score=42.97 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred cccccCCCceeecCcccccCCCceeccceeEEE
Q 007833 460 PCAYVCANSRIYNATDWYICQGMRCPANTHKPS 492 (588)
Q Consensus 460 ~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~ 492 (588)
.|| .|+. ......|+.|..........++.
T Consensus 682 ~Cp-~C~~--~~~~~~C~~C~~~~~~~~~~~i~ 711 (900)
T PF03833_consen 682 VCP-DCGI--EVEEDECPKCGRETTSYSKQKID 711 (900)
T ss_dssp ---------------------------------
T ss_pred ecc-cccc--ccCccccccccccCcccceeecC
Confidence 477 7854 33456999999876555544443
No 216
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=27.04 E-value=30 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.560 Sum_probs=17.0
Q ss_pred ccccccccCccceeeecc--Cccccccccccc
Q 007833 401 RIACKKCNNFHVWIETKK--SKASARWCQECN 430 (588)
Q Consensus 401 ~v~C~kC~GsG~~~~t~k--~~~~ar~C~~C~ 430 (588)
.+.|+.|+... .+..++ .......|+.|+
T Consensus 2 ~i~CP~C~~~f-~v~~~~l~~~~~~vrC~~C~ 32 (37)
T PF13719_consen 2 IITCPNCQTRF-RVPDDKLPAGGRKVRCPKCG 32 (37)
T ss_pred EEECCCCCceE-EcCHHHcccCCcEEECCCCC
Confidence 36788887764 222221 334567788886
No 217
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=26.68 E-value=7.2e+02 Score=25.63 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcch
Q 007833 62 NHLGHFAKIMLLLSMLWLDCTIRGI 86 (588)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
.|+-..||+..=++. .+.||
T Consensus 34 ~~l~~iGR~AfPiF~-----lveGf 53 (224)
T TIGR02755 34 EWLFLAGRGAFPLFA-----LVWGL 53 (224)
T ss_pred HHHHHHHHHHHHHHH-----HHHHH
Confidence 467778888766654 66776
No 218
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=26.67 E-value=76 Score=24.61 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 307 LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 307 IKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
-.+.+|+..+.-|||.+ ..+..+.+.+.|..|+|.++...+|..
T Consensus 11 f~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 11 FSQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566777788889854 357889999999999987777766654
No 219
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=26.56 E-value=5.5e+02 Score=26.85 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=26.6
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhcCchHHHHHhhhhhhHhhhhhhhhHHHHH
Q 007833 9 VNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALN 62 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (588)
..++....--+.++++.++.+-=+=|.++.+.- -+-.+...++-.||+.++
T Consensus 68 rkv~hssigf~~l~l~g~g~kr~~i~~~Li~kf---i~ifigdlirlnWP~Fsr 118 (269)
T KOG4453|consen 68 RKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKF---IHIFIGDLIRLNWPIFSR 118 (269)
T ss_pred hhHhhhhHHHHHHHHHhcccchhhhhHHHHHHH---HHHHHhHHHHhccHHHHH
Confidence 334444444555666666665544444441111 123455667778888764
No 220
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=26.55 E-value=7.5e+02 Score=30.35 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=55.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhcCchHHH---HHhhhh-------hhHhhh-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 007833 9 VNVVVRSLRVYVVPTLKAAIELLERQSPMLMT---NIYNAH-------DYVSRK-VQQVYPVALNHLGHFAKIMLLLSML 77 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
-+|++-.+ .+...+++++..|.|+.++.+.. .+.++- =+.... +.+||--|+..+.-|-..|-|++++
T Consensus 564 ~~~ili~~-~i~~~~~~E~iQifqqk~~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi 642 (929)
T KOG0510|consen 564 FCMILIFT-SIILGILRECIQIFQQKRHYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMI 642 (929)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhheeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 45667899999999999987221 111110 011122 5588887777766555555555542
Q ss_pred hhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 78 WLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVL 121 (588)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 121 (588)
+ ||---+.|+||.--++--+.=+.++|.++++
T Consensus 643 ---------~---~~p~~gIfvvM~~~I~ktflk~f~vfs~lli 674 (929)
T KOG0510|consen 643 ---------G---RFPVFGIFVVMLEVILKTFLKSFMVFSILLI 674 (929)
T ss_pred ---------c---cCCccceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3333346677666655555555555554443
No 221
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=26.43 E-value=1.7e+02 Score=25.32 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=31.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKL 336 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I 336 (588)
|++.-++.|++| .++.+||+.|-++..+|..--..|. ....++|..-
T Consensus 2 CRNIk~LfnfdP--PAT~~EvrdAAlQfVRKlSGtT~PS-~~n~~AFe~A 48 (88)
T COG5552 2 CRNIKELFNFDP--PATPVEVRDAALQFVRKLSGTTHPS-AANAEAFEAA 48 (88)
T ss_pred ccchHHHhCCCC--CCCcHHHHHHHHHHHHHhcCCCCcc-hhhHHHHHHH
Confidence 345557789999 8999999999888777764433332 2223555443
No 222
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.35 E-value=1.5e+02 Score=29.75 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhh
Q 007833 134 ALALVVVALSGTILLWLYGSFWT 156 (588)
Q Consensus 134 ~~~~~iv~~~~~~~~w~~~~f~~ 156 (588)
-|-.+|| +.+++..|++-+|.-
T Consensus 88 ~P~~Liv-l~~lv~~w~~LY~~r 109 (187)
T KOG3142|consen 88 HPLSLIV-LLALVAAWLFLYFLR 109 (187)
T ss_pred hHHHHHH-HHHHHHHHHheeeec
Confidence 3333333 345566666666654
No 223
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=26.28 E-value=35 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.744 Sum_probs=17.0
Q ss_pred HHHHhhhhhhhHHHHHHhhhhccccc
Q 007833 146 ILLWLYGSFWTTFFVIFLGGLAFKFT 171 (588)
Q Consensus 146 ~~~w~~~~f~~~~~~~~~~g~~~~~~ 171 (588)
+|-| .|++.++++++|+.+-++
T Consensus 2 fiaw----ywivli~lv~~gy~~hmk 23 (54)
T PF13260_consen 2 FIAW----YWIVLIVLVVVGYFCHMK 23 (54)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHH
Confidence 4555 489999999999876665
No 224
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=26.15 E-value=2.4e+02 Score=27.13 Aligned_cols=12 Identities=0% Similarity=-0.108 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 007833 110 AMVGMFKFLMVL 121 (588)
Q Consensus 110 ~~~~~~~~~~~~ 121 (588)
..+.++|+|..+
T Consensus 76 kaa~lvYllPLl 87 (154)
T PRK10862 76 RSALLVYMTPLV 87 (154)
T ss_pred HHHHHHHHHHHH
Confidence 344455655443
No 225
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.05 E-value=1.5e+02 Score=26.78 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHH
Q 007833 119 MVLVVAALVAFFIGFALALVVV 140 (588)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~~iv 140 (588)
+++-++|+|++..||..--|=+
T Consensus 30 ~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777776544443
No 226
>PTZ00370 STEVOR; Provisional
Probab=25.99 E-value=79 Score=33.69 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 007833 121 LVVAALVAFFIGFALALVVVALSGTILLWLYG 152 (588)
Q Consensus 121 ~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~ 152 (588)
-+++++.+.|..|+.+.+++-+.+||++.+|-
T Consensus 245 tAAtaAsaaF~Pygiaalvllil~vvliilYi 276 (296)
T PTZ00370 245 TAASAASSAFYPYGIAALVLLILAVVLIILYI 276 (296)
T ss_pred hHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 35666788899999998888887777765553
No 227
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=25.96 E-value=5e+02 Score=23.52 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007833 54 QQVYPVALNHLGHFAKIMLLLSMLWLD 80 (588)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
.+.||.+..+++-...+++++......
T Consensus 34 p~~fP~~l~~~l~~~~~~l~~~~~~~~ 60 (141)
T PF07331_consen 34 PGFFPRLLGILLLILSLLLLVRSFRGP 60 (141)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467999999999999888887666653
No 228
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=25.65 E-value=3.6e+02 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007833 57 YPVALNHLGHFAKIMLLLSMLWLDCT 82 (588)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (588)
-+....-..|+|.++-+++.+|+|-.
T Consensus 36 ~~~~f~v~lhlGtllAvl~~fr~~i~ 61 (259)
T PF02673_consen 36 PGLAFDVFLHLGTLLAVLIYFRKDIW 61 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999999999964
No 229
>PRK14416 membrane protein; Provisional
Probab=25.59 E-value=3.5e+02 Score=27.42 Aligned_cols=9 Identities=11% Similarity=-0.208 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 007833 209 DALIFFLKS 217 (588)
Q Consensus 209 diL~~~l~~ 217 (588)
|=+..+++.
T Consensus 178 ~nI~r~~~~ 186 (200)
T PRK14416 178 KSLRDPANR 186 (200)
T ss_pred hhHHHHHcC
Confidence 334444443
No 230
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=25.51 E-value=2.1e+02 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 100 VIWCSILSVIAMVGMFKFLMVLVVAAL 126 (588)
Q Consensus 100 ~~w~~~~~~~~~~~~~~~~~~~~~~~~ 126 (588)
+-|...++.+|..+..-..+.+.+.+.
T Consensus 62 i~~ai~~~~~s~ll~~l~i~~lf~~~~ 88 (130)
T PF11026_consen 62 IRRAITLATLSALLVCLVILLLFLSAL 88 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444444333
No 231
>PRK10160 taurine transporter subunit; Provisional
Probab=25.40 E-value=7.7e+02 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q 007833 116 KFLMVLVVAALVAFFIGFALA 136 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~~~ 136 (588)
.+++++.++.+++..+|+..+
T Consensus 86 ~~~~g~~ia~~ig~~lg~~~~ 106 (275)
T PRK10160 86 RIVLALLAAVVIGIPVGIAMG 106 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554444
No 232
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.38 E-value=4.7e+02 Score=27.91 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 007833 135 LALVVVALSGTILLWLYG 152 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~ 152 (588)
+-++++|++|+++-|+|.
T Consensus 119 ~~~l~ig~~g~~~~~~YT 136 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLYQ 136 (304)
T ss_pred HHHHHHHHHHHHHhhecc
Confidence 556788889999988885
No 233
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=25.35 E-value=1.1e+03 Score=27.42 Aligned_cols=130 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-------------hcc-hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 62 NHLGHFAKIMLLLSMLWLDCT-------------IRG-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALV 127 (588)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (588)
.....++++-+.++.-|.=+. ..+ +--+.-+..+.+++.+|...+..+-- -+.-++.++++.+++
T Consensus 5 ~~~~~~~~~~l~ll~a~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~k~~~~~l~l~sa~ 83 (555)
T COG2194 5 LKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFPR-LLKPLAGVLSLVSAA 83 (555)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHH-HHHHHHH----------------HHHhhhhhhhHHHHHHhhhhccc---cch-hhHHHHHHHHHHHh
Q 007833 128 AFFIGFALALVV-VALSGTI----------------LLWLYGSFWTTFFVIFLGGLAFK---FTH-ERLALFITTMYSIY 186 (588)
Q Consensus 128 ~~~~g~~~~~~i-v~~~~~~----------------~~w~~~~f~~~~~~~~~~g~~~~---~~~-~~~~~~~~~~~~~y 186 (588)
+.|.++.-++++ -++++.| ++|++...-..+++++..-+=+- +.. -...+.+..++.+-
T Consensus 84 asy~~~~y~i~~~~~mi~~v~~Tn~~E~~el~t~~~~~~l~~~g~l~~ll~~~~~~r~~~~~~~~~~~~~~~il~~~~~~ 163 (555)
T COG2194 84 ASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLWLVLVGLLPALLIVLVIIRYYRVWLRRLWARLVSILLSLLVI 163 (555)
T ss_pred HHHHHHHhcccccHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhh
Q 007833 187 CAWTYV 192 (588)
Q Consensus 187 ~~~~~~ 192 (588)
.+.+..
T Consensus 164 ~~~~~~ 169 (555)
T COG2194 164 LAFAAP 169 (555)
T ss_pred HHHHHH
No 234
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=25.31 E-value=2.2e+02 Score=31.76 Aligned_cols=30 Identities=43% Similarity=0.690 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHhh
Q 007833 173 ERLALFITTMYSIYCAWTYVGWLGLLLALNL 203 (588)
Q Consensus 173 ~~~~~~~~~~~~~y~~~~~~gw~g~~l~~nl 203 (588)
+||.+++..+=.|+.|+ +.||=|.+++--+
T Consensus 204 ~rf~l~~l~lP~I~lA~-~yGWQG~llasll 233 (497)
T COG3851 204 SRFTLFCLALPIIALAW-HYGWQGALLASLL 233 (497)
T ss_pred hhHhHHHHHHHHHHHHH-HhcchHHHHHHHH
Confidence 69999999998999998 7799998886443
No 235
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=25.24 E-value=3.8e+02 Score=26.13 Aligned_cols=23 Identities=9% Similarity=0.314 Sum_probs=10.3
Q ss_pred chhHHHHHHHH-HHHHHHHHHHHH
Q 007833 94 TTSFFSVIWCS-ILSVIAMVGMFK 116 (588)
Q Consensus 94 ~~~~~~~~w~~-~~~~~~~~~~~~ 116 (588)
+-.+....+.+ +++++-+.++.+
T Consensus 15 ~~~l~~~~l~p~~l~~~l~~~~~~ 38 (219)
T PF07264_consen 15 SPKLRRLSLIPLLLNLLLFLALFI 38 (219)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444 444444433333
No 236
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=25.03 E-value=84 Score=25.76 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 309 REYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 309 kAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
+..|.....-||+.. ..+..+.|.+.|..|++.+|...+|..
T Consensus 14 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445666667789864 247889999999999999987776664
No 237
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.01 E-value=63 Score=36.76 Aligned_cols=54 Identities=15% Similarity=0.404 Sum_probs=31.3
Q ss_pred cccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccc
Q 007833 398 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477 (588)
Q Consensus 398 isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~ 477 (588)
+...+.|..|+-. ..|+.|+ -..+.... .....|. .|+-.- .....|+
T Consensus 210 ya~~~~C~~Cg~~-------------~~C~~C~--------~~l~~h~~---------~~~l~Ch-~Cg~~~-~~~~~Cp 257 (505)
T TIGR00595 210 YSKNLLCRSCGYI-------------LCCPNCD--------VSLTYHKK---------EGKLRCH-YCGYQE-PIPKTCP 257 (505)
T ss_pred CCCeeEhhhCcCc-------------cCCCCCC--------CceEEecC---------CCeEEcC-CCcCcC-CCCCCCC
Confidence 4566789999753 4699996 22222111 1123587 585433 2457899
Q ss_pred cCCCce
Q 007833 478 ICQGMR 483 (588)
Q Consensus 478 ~C~G~G 483 (588)
.|.+..
T Consensus 258 ~C~s~~ 263 (505)
T TIGR00595 258 QCGSED 263 (505)
T ss_pred CCCCCe
Confidence 998763
No 238
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.97 E-value=5e+02 Score=25.77 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=8.5
Q ss_pred Hhhhhhhcchhhhhhc
Q 007833 77 LWLDCTIRGIDSFMRM 92 (588)
Q Consensus 77 ~~~~~~~~~~~~~~~~ 92 (588)
++.-|.+.|+-.+..-
T Consensus 90 ~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3445666665554444
No 239
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=24.70 E-value=3.7e+02 Score=29.08 Aligned_cols=16 Identities=19% Similarity=0.630 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 007833 137 LVVVALSGTILLWLYG 152 (588)
Q Consensus 137 ~~iv~~~~~~~~w~~~ 152 (588)
++..++.++++.|.|.
T Consensus 127 il~~~~~~l~l~~~YS 142 (331)
T PRK12392 127 IISSILAGLFVAYIYS 142 (331)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 4555678888888884
No 240
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=24.62 E-value=4.2e+02 Score=28.19 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 007833 135 LALVVVALSGTILLWLYG 152 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~ 152 (588)
+.++.++++++++.|+|.
T Consensus 120 ~~~~~~~~~~~~lg~~Ys 137 (308)
T PRK12887 120 PWLLITVGISLLIGTAYS 137 (308)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456777888888999987
No 241
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=24.58 E-value=1.9e+02 Score=32.70 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 105 ILSVIAMVGMFKFLMVLVVAALVAFF 130 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (588)
++++++=--+.++|+.+|+-+++.-+
T Consensus 227 ll~~ItdP~va~ILl~LG~~gLifel 252 (436)
T COG1030 227 LLNWITDPSVALILLLLGFLGLIFEL 252 (436)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 34444444445556666655555444
No 242
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.53 E-value=59 Score=35.35 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=7.5
Q ss_pred HHHHHHHHhh
Q 007833 335 KLQNAYEVLF 344 (588)
Q Consensus 335 ~I~~AYevLs 344 (588)
+|.+||..|.
T Consensus 20 eikkayrkla 29 (337)
T KOG0712|consen 20 EIKKAYRKLA 29 (337)
T ss_pred HHHHHHHHHH
Confidence 5788888774
No 243
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=24.35 E-value=9.6e+02 Score=28.80 Aligned_cols=16 Identities=31% Similarity=0.332 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhCCCCC
Q 007833 307 LKREYRKKAMLVHPDKN 323 (588)
Q Consensus 307 IKkAYRklalk~HPDkn 323 (588)
||-.|.| |+.-.|+..
T Consensus 589 ikYFY~k-Ake~~~~v~ 604 (700)
T COG1480 589 IKYFYYK-AKEENPNVK 604 (700)
T ss_pred HHHHHHH-HHHhCCCCC
Confidence 5555554 666667743
No 244
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=24.09 E-value=1.1e+03 Score=29.06 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 007833 329 AVEAFKKLQNAY 340 (588)
Q Consensus 329 A~e~Fk~I~~AY 340 (588)
..|++++=.+|.
T Consensus 532 ~~~~~~~~~~~~ 543 (810)
T TIGR00844 532 GRERLQKEKEAH 543 (810)
T ss_pred hHHHHHHHHHhh
Confidence 345555544443
No 245
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.99 E-value=1.1e+03 Score=27.53 Aligned_cols=110 Identities=23% Similarity=0.398 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHHHhhhhhh----------
Q 007833 94 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI--------GFALALVVVALSGTILLWLYGSFW---------- 155 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~iv~~~~~~~~w~~~~f~---------- 155 (588)
||-|+.+.++.|+.+. +.=+=|=|+.+.++.+..... ....-+++.|++.++.=++||+|+
T Consensus 346 PT~~~ai~f~lfFGmM-~gD~GyGLil~l~~~~l~~~~~k~~~~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~ 424 (646)
T PRK05771 346 PTPFLAIFFPLFFGMM-LGDAGYGLLLLLIGLLLSFKLKKKSEGLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPG 424 (646)
T ss_pred CccHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcccccccc
Q ss_pred -------------------hHHHHHHhhhhccccchhhHHHHHHHHHHHh------hhhhhhhhhhHHHHHhhhhhhH
Q 007833 156 -------------------TTFFVIFLGGLAFKFTHERLALFITTMYSIY------CAWTYVGWLGLLLALNLSFVSS 208 (588)
Q Consensus 156 -------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~y------~~~~~~gw~g~~l~~nlsfls~ 208 (588)
+...+-++.|.. |=-+.+.+-..-.+. -+.-.++|+.+++++=+.++..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~lsl~iGvi----~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~ 498 (646)
T PRK05771 425 GYLELPEGYPSLSTENDVMTILIISLLIGVI----HLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGG 498 (646)
T ss_pred ccccccCCccccCCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
No 246
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=23.90 E-value=90 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 94 TTSFFSVIWCSILSVIAMVGMFKFLMVLV 122 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 122 (588)
+..|+++.|..++-+...++.+++|..+|
T Consensus 65 S~~F~L~~~~ti~lv~~~~~~I~lL~svG 93 (103)
T PF12955_consen 65 SVPFWLFAGFTIALVVLVAGAIGLLFSVG 93 (103)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35688888888887777777777776654
No 247
>PF12966 AtpR: N-ATPase, AtpR subunit
Probab=23.83 E-value=2.4e+02 Score=24.56 Aligned_cols=54 Identities=30% Similarity=0.543 Sum_probs=34.3
Q ss_pred HHhhhhhhhHHHHHHhhhh---ccccc-hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhh
Q 007833 148 LWLYGSFWTTFFVIFLGGL---AFKFT-HERLALFITTMYSIYCAWTYVGWLGLLLALNLSFV 206 (588)
Q Consensus 148 ~w~~~~f~~~~~~~~~~g~---~~~~~-~~~~~~~~~~~~~~y~~~~~~gw~g~~l~~nlsfl 206 (588)
.+++++.|.|.=....+.. .+.+. -.|.++.+...|.+ ...+|..++.++ +-|+
T Consensus 15 ~~yF~gLw~tvr~~~~~~~p~~~~~~S~l~R~~l~~~~f~~~----~~~~~~~lL~~l-~GF~ 72 (85)
T PF12966_consen 15 ALYFGGLWWTVRRLLASKRPALWFLLSFLLRLALVLAGFYLL----AQGGWWRLLACL-LGFL 72 (85)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHH-HHHH
Confidence 4567778887776666551 12233 36888888888777 677887666554 4443
No 248
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.56 E-value=95 Score=33.07 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 007833 122 VVAALVAFFIGFALALVVVALSGTILLWLYG 152 (588)
Q Consensus 122 ~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~ 152 (588)
+++++.+.|..|+.+.+++-+.+||++.||-
T Consensus 250 AAtaA~aaF~Pcgiaalvllil~vvliiLYi 280 (295)
T TIGR01478 250 AASAATSTFLPYGIAALVLIILTVVLIILYI 280 (295)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999988888887777766553
No 249
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.54 E-value=94 Score=35.97 Aligned_cols=86 Identities=27% Similarity=0.541 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHhhh-----hhhhHHHH-------HHhhhhccccchhhHHH
Q 007833 120 VLVVAALVAFFIGFAL----------ALVVVALSGTILLWLYG-----SFWTTFFV-------IFLGGLAFKFTHERLAL 177 (588)
Q Consensus 120 ~~~~~~~~~~~~g~~~----------~~~iv~~~~~~~~w~~~-----~f~~~~~~-------~~~~g~~~~~~~~~~~~ 177 (588)
.|.+|+.++.-.||+- |+-|.++.-.+-||.=+ .||.+..- ---||+.|..|.--+-+
T Consensus 147 GL~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHV 226 (751)
T KOG2292|consen 147 GLLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHV 226 (751)
T ss_pred cHHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHH
Confidence 3556666666666653 34455555555666532 35544322 22499999999855555
Q ss_pred HHHHHHHHhhhhhhhhh-----hhHHHHHhhhh
Q 007833 178 FITTMYSIYCAWTYVGW-----LGLLLALNLSF 205 (588)
Q Consensus 178 ~~~~~~~~y~~~~~~gw-----~g~~l~~nlsf 205 (588)
|+..+..=|+-|.|++. +|.+||+-..|
T Consensus 227 lvlllmGRyS~rlyiaY~t~y~lGtllsmqipf 259 (751)
T KOG2292|consen 227 LVLLLMGRYSSRLYIAYTTFYCLGTLLSMQIPF 259 (751)
T ss_pred HHHHHhcccccceeeehhhHHHHHHHHHccCcc
Confidence 55555554555544443 68888877664
No 250
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=23.51 E-value=43 Score=19.59 Aligned_cols=13 Identities=54% Similarity=0.810 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhh
Q 007833 332 AFKKLQNAYEVLF 344 (588)
Q Consensus 332 ~Fk~I~~AYevLs 344 (588)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5778888888764
No 251
>PLN00012 chlorophyll synthetase; Provisional
Probab=23.47 E-value=4.3e+02 Score=29.11 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHhhh----hhhhHHHH-HHhhhhccccchhhHHHHHHHHH
Q 007833 114 MFKFLMVLVVAALVAFFIGFA-----LALVVVALSGTILLWLYG----SFWTTFFV-IFLGGLAFKFTHERLALFITTMY 183 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~g~~-----~~~~iv~~~~~~~~w~~~----~f~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 183 (588)
+...+..+.++..++.++... +-+++++++|+++.|+|. .+=-.+.+ -++.|..|. ..-.+
T Consensus 171 l~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~---------~lp~~ 241 (375)
T PLN00012 171 ITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYI---------SLPWW 241 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHH---------HHHHH
Q ss_pred HHhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHhhhccCCC
Q 007833 184 SIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTD 225 (588)
Q Consensus 184 ~~y~~~~~~gw~g~~l~~nlsfls~diL~~~l~~~~e~~~~s 225 (588)
..|.+.-.+-|..+++++=..++ .+..++.++.+|..+|
T Consensus 242 ~g~a~~g~~s~~~illal~~~l~---~lai~ivnd~~Die~D 280 (375)
T PLN00012 242 AGQALFGTLTPDVVVLTLLYSIA---GLGIAIVNDFKSIEGD 280 (375)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH---HHHHHHHhhhcchhhH
No 252
>PRK13591 ubiA prenyltransferase; Provisional
Probab=23.47 E-value=1.3e+02 Score=32.30 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhhh
Q 007833 138 VVVALSGTILLWLYGS 153 (588)
Q Consensus 138 ~iv~~~~~~~~w~~~~ 153 (588)
++++++++++.|+|..
T Consensus 122 ~ll~ll~~l~g~lYS~ 137 (307)
T PRK13591 122 LLLAFLPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3455555566666653
No 253
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=23.46 E-value=5.2e+02 Score=26.81 Aligned_cols=67 Identities=16% Similarity=0.295 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccchhhHH-----------HHHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 007833 136 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLA-----------LFITTMYSIYCAWTYVGWLGLLLALNLS 204 (588)
Q Consensus 136 ~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~y~~~~~~gw~g~~l~~nls 204 (588)
|..++.+-.+++++..++.|....++++........| ++ =++.++.++..--..+|++|++++.=+.
T Consensus 252 G~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 252 GPGAVLVPWALYLFITGNYAMGIGLLILYLVVLILRQ--ILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH--hHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666665544333332222211111 11 1345556666666678888999875443
No 254
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=23.01 E-value=1.7e+02 Score=30.65 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007833 53 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIG 132 (588)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (588)
.+---|++..|++-.|-++.-+++. .++|+-- +.-.+|.+-.-.-..=..+.-++.-+|
T Consensus 22 ~~~gDg~~fQw~~~~~i~~~g~~v~----~~~~~p~-----------------f~p~amlgG~lW~~gN~~~vpii~~iG 80 (254)
T PF07857_consen 22 FDTGDGFFFQWVMCSGIFLVGLVVN----LILGFPP-----------------FYPWAMLGGALWATGNILVVPIIKTIG 80 (254)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHH----HhcCCCc-----------------ceeHHHhhhhhhhcCceeehhHhhhhh
Confidence 3333588888888887655322211 1233321 122344443322233334456677889
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh
Q 007833 133 FALALVVVALSGTILLWLYGSF 154 (588)
Q Consensus 133 ~~~~~~iv~~~~~~~~w~~~~f 154 (588)
..+|++|-+.+-+++=|..+-|
T Consensus 81 Lglg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 81 LGLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999888887776655
No 255
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=23.01 E-value=4.2e+02 Score=27.74 Aligned_cols=46 Identities=11% Similarity=0.230 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 007833 117 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIF 162 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~ 162 (588)
+-++..+--.+...+...|.+++++++..++...+..+|+.+++-+
T Consensus 24 I~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l 69 (334)
T PF04515_consen 24 IPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYL 69 (334)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677788999999999999988888888888666644
No 256
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=22.97 E-value=96 Score=24.26 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 311 YRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 311 YRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
.|...+.-|||.. ..+..+.|.+.|..|++.++....|..
T Consensus 15 ~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455566788844 358899999999999988877776664
No 257
>COG4758 Predicted membrane protein [Function unknown]
Probab=22.68 E-value=4.2e+02 Score=27.56 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=8.2
Q ss_pred hhhhHHHHHHhhhhccccch
Q 007833 153 SFWTTFFVIFLGGLAFKFTH 172 (588)
Q Consensus 153 ~f~~~~~~~~~~g~~~~~~~ 172 (588)
+||.. ++++++++.+.++|
T Consensus 28 ~~~~l-v~ll~lll~~~~t~ 46 (235)
T COG4758 28 FFWPL-VFLLALLLFRIYTT 46 (235)
T ss_pred HHHHH-HHHHHHHHHhheeh
Confidence 34552 23333444445555
No 258
>PRK10794 cell wall shape-determining protein; Provisional
Probab=22.54 E-value=1e+03 Score=25.96 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhhhccchh
Q 007833 67 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 96 (588)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (588)
+..+++|++.....-.+.|-.+-+++|+-+
T Consensus 80 ~~~~~lL~l~~~~g~~~~Ga~rWi~iG~~~ 109 (370)
T PRK10794 80 IICIILLVAVDAFGQISKGAQRWLDLGIVR 109 (370)
T ss_pred HHHHHHHHHHHhcCCCcCCcccceecCCcc
Confidence 455666666666777788888899999765
No 259
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=22.54 E-value=90 Score=28.85 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred HHHHHhhcCCCcccccCcccCC---CCCHHHHHHHHHHHHHHh
Q 007833 279 DEVVRLLNCTDHYSALGLSRFE---NVDVSILKREYRKKAMLV 318 (588)
Q Consensus 279 ~e~~ril~~~d~Y~ILGv~~~~---~as~~eIKkAYRklalk~ 318 (588)
++++++.+..+|++.|||+-+. +...-.|-|.|.......
T Consensus 10 ~~l~~LssAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~ 52 (113)
T PRK00810 10 DQLKRLSSAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQE 52 (113)
T ss_pred HHHHHcccHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhc
Confidence 5666676677899999998621 123344556665554443
No 260
>COG1289 Predicted membrane protein [Function unknown]
Probab=22.40 E-value=3.9e+02 Score=31.41 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhh
Q 007833 135 LALVVVALSGTILLWLYGSFWT 156 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~~f~~ 156 (588)
.|.++-.++|.+++|+..+-+.
T Consensus 408 ~GTllg~~~g~~~l~~~~p~~~ 429 (674)
T COG1289 408 LGTLLGLLLGLLVLLLLLPLIP 429 (674)
T ss_pred HHHHHHHHHHHHHHHHhcccch
Confidence 3444444444444444444444
No 261
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=22.39 E-value=75 Score=36.67 Aligned_cols=27 Identities=7% Similarity=0.045 Sum_probs=21.7
Q ss_pred eecCcccccCCCceeccceeEEEEEeC
Q 007833 470 IYNATDWYICQGMRCPANTHKPSFHVN 496 (588)
Q Consensus 470 i~~~~~C~~C~G~G~~~~t~~v~V~Vp 496 (588)
.+....|+.|+|.|+...+-..++-++
T Consensus 485 ~~~~~gC~~C~~~Gy~GR~~i~E~l~~ 511 (564)
T TIGR02538 485 LYGPVGCDECSNTGYKGRVGIYEVMPM 511 (564)
T ss_pred eecCCCCcccCCCCCCCceEEEEEEeC
Confidence 346688999999998888878887776
No 262
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=22.23 E-value=1e+03 Score=26.41 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=35.8
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 48 YVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALV 127 (588)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (588)
..+..+.-.+|++..-+.+. +..=.|-..=| |+|+.++=.|-= ..+++.+.-..-..+.+|..+++
T Consensus 15 ~~k~l~~la~P~i~~~l~~~-------l~~~vD~~~vG-----~~~~~alaav~l--a~~i~~~~~~~~~gl~~g~~~li 80 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQT-------LYGLVDTFMVG-----HLGAEALAAVGL--ANPIFFLIIAIFIGLGTGTTVLV 80 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh-----cccHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHH
Confidence 45566778899887654432 22222333323 233222222111 12222233334455677888888
Q ss_pred HHHHh
Q 007833 128 AFFIG 132 (588)
Q Consensus 128 ~~~~g 132 (588)
.+++|
T Consensus 81 aq~~G 85 (455)
T COG0534 81 AQAIG 85 (455)
T ss_pred HHHHc
Confidence 88888
No 263
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.21 E-value=6.8e+02 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=9.3
Q ss_pred HhhhhhhHhhhhhhh--hHHHHH
Q 007833 42 IYNAHDYVSRKVQQV--YPVALN 62 (588)
Q Consensus 42 ~~~~~~~~~~~~~~~--~~~~~~ 62 (588)
..++++++.....+. ||....
T Consensus 84 ~~ea~~~L~~I~~~~~~y~~~~~ 106 (193)
T PF06738_consen 84 LEEAIERLDEIDREPPRYPPWLV 106 (193)
T ss_pred HHHHHHHHHHHhhCCCCCCHHHH
Confidence 344455554443333 555433
No 264
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=22.21 E-value=81 Score=28.59 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.3
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 007833 128 AFFIGFALALVVVALSGTIL 147 (588)
Q Consensus 128 ~~~~g~~~~~~iv~~~~~~~ 147 (588)
-+|.|+..|+.|+|++++++
T Consensus 79 na~yGfviGl~i~aLlAlil 98 (108)
T COG4062 79 NAFYGFVIGLGIMALLALIL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999988766
No 265
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=21.91 E-value=3.6e+02 Score=26.26 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=13.2
Q ss_pred ccCcccCCCCCHHHHHHHHHHHHHH
Q 007833 293 ALGLSRFENVDVSILKREYRKKAML 317 (588)
Q Consensus 293 ILGv~~~~~as~~eIKkAYRklalk 317 (588)
.++++. ..+-.++||+.|.+..++
T Consensus 132 ~id~~~-~~~~~~~I~~~~E~~l~e 155 (158)
T COG1863 132 AIDVED-KEAARESIKNRFEKYLKE 155 (158)
T ss_pred ECCCCC-hHHHHHHHHHHHHHHHHH
Confidence 344443 134456677777766554
No 266
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=21.86 E-value=1.2e+02 Score=28.38 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=22.0
Q ss_pred hhhhhhhhHHHHHhhh-------hhhHHHHHHHHHHhhhc
Q 007833 189 WTYVGWLGLLLALNLS-------FVSSDALIFFLKSKVNQ 221 (588)
Q Consensus 189 ~~~~gw~g~~l~~nls-------fls~diL~~~l~~~~e~ 221 (588)
+-|.||+|+.|++-++ |--||.-+.+-.+++.+
T Consensus 4 RQRmgWv~v~lyLl~s~~~~yyvFei~~~Yn~laLehiq~ 43 (128)
T PF15190_consen 4 RQRMGWVGVSLYLLASAAAVYYVFEIHDTYNRLALEHIQR 43 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 4478999999988776 44455555555555554
No 267
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=21.83 E-value=5.9e+02 Score=30.23 Aligned_cols=106 Identities=24% Similarity=0.283 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccchhh
Q 007833 95 TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER 174 (588)
Q Consensus 95 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~ 174 (588)
+++-.|.|.-=|...+..++ -+|...|+-++.+.++|--+--+-++++-++- +-.+-+++||-.|..|--
T Consensus 7 ~~~~~ifw~wnlt~~~l~~~-~i~pf~~~p~i~~~~~g~~~~~~a~~~i~lia--------ip~i~~~ig~~~f~~~p~- 76 (952)
T TIGR02921 7 ACCEGIFWFWNLTFASLTGL-GILPFFGLPAILAAAIGDHPIEFALALILLIA--------IPAICIGIGGTCFLKNPT- 76 (952)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhhhccccHHHHHHHcccchHHHHHHHHHHHH--------HHHHHhhhcchhhhcCcH-
Confidence 45566777665555555443 34556677777777777665444433311111 123445556655554422
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhHHHHH
Q 007833 175 LALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALI 212 (588)
Q Consensus 175 ~~~~~~~~~~~y~~~~~~gw~g~~l~~nlsfls~diL~ 212 (588)
.||-..|.+=---++.--+-++|.+.|.--|+.+|+
T Consensus 77 --~liklfygve~pi~~i~l~~lflirel~p~~s~ili 112 (952)
T TIGR02921 77 --ALIKLFYGVEAPIFFICLLRLFLIRELNPASSHILI 112 (952)
T ss_pred --HHHHHHHcccchHHHHHHHHHHHHHhcCcchhhHHH
Confidence 233334432222223333345566666544444443
No 268
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=21.80 E-value=4.8e+02 Score=21.84 Aligned_cols=40 Identities=23% Similarity=0.635 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007833 97 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALS 143 (588)
Q Consensus 97 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~ 143 (588)
||-.+|=-+ -++-+++.++.-...++.++++.|.+.+++.
T Consensus 6 ~fk~iW~~~-------DIi~Fila~i~i~it~F~~n~~~g~i~i~I~ 45 (63)
T PF06341_consen 6 FFKTIWKYF-------DIILFILAMIFINITAFLINQIAGLISIGIT 45 (63)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777522 2344566666667778889999999888773
No 269
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=21.78 E-value=5.7e+02 Score=26.93 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 007833 135 LALVVVALSGTILLWLYG 152 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~ 152 (588)
+.++++|++|+++-|+|.
T Consensus 106 ~~~l~lg~~g~~~~~~Yt 123 (285)
T TIGR02235 106 ITVLALVGLCCFLGYLYQ 123 (285)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 446788888999988886
No 270
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=21.72 E-value=7.9e+02 Score=26.28 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=12.7
Q ss_pred HhhhhhhhhhhhHHHHHhhh
Q 007833 185 IYCAWTYVGWLGLLLALNLS 204 (588)
Q Consensus 185 ~y~~~~~~gw~g~~l~~nls 204 (588)
+..+-...||+..++.+=++
T Consensus 295 vllsil~gg~l~G~~G~ila 314 (344)
T PRK12287 295 VFLSLIFWGWLLGPVGMLLS 314 (344)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 44555566777666666665
No 271
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=21.48 E-value=6.8e+02 Score=26.52 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Q 007833 116 KFLMVLVVAALVAFFIGFALALVVV 140 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~~iv 140 (588)
+=|-.++..|++.+.+|+..+++++
T Consensus 229 ~Plr~~~~~g~~~~~~~~~~~~~~~ 253 (325)
T PRK10714 229 TPLRLLSLLGSIIAIGGFSLAVLLV 253 (325)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666655555444
No 272
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.46 E-value=1.1e+02 Score=32.10 Aligned_cols=27 Identities=19% Similarity=0.615 Sum_probs=15.4
Q ss_pred cccccccCccceeeeccCccccccccccc
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECN 430 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~ 430 (588)
.+|+.|+.. +.. ..-.+....+|+.|+
T Consensus 246 ~pC~~Cg~~-I~~-~~~~gR~t~~CP~CQ 272 (272)
T TIGR00577 246 EPCRRCGTP-IEK-IKVGGRGTHFCPQCQ 272 (272)
T ss_pred CCCCCCCCe-eEE-EEECCCCCEECCCCC
Confidence 478888654 211 122345667788884
No 273
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=21.44 E-value=39 Score=37.63 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHHhC
Q 007833 300 ENVDVSILKREYRKKAMLVH 319 (588)
Q Consensus 300 ~~as~~eIKkAYRklalk~H 319 (588)
++++.++|.+.+..|..+|+
T Consensus 163 ~~a~~eel~~el~~L~~~w~ 182 (414)
T TIGR00757 163 EGASEEALIKDLEFLLRKWE 182 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 36788888888888877763
No 274
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=21.42 E-value=1.7e+02 Score=32.64 Aligned_cols=68 Identities=24% Similarity=0.396 Sum_probs=42.5
Q ss_pred hhh-hcchhhhhhc--cchhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHH
Q 007833 80 DCT-IRGIDSFMRM--GTTSFFSVIWCSILSVIA----------MVGMFKFLMVLVVAALVAFFIG--FALALVVVALSG 144 (588)
Q Consensus 80 ~~~-~~~~~~~~~~--~~~~~~~~~w~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g--~~~~~~iv~~~~ 144 (588)
||- .=|++++.|+ |.++||+++=..++.+-+ -.+.+|+++-+++.....+... ++.-.+.|+.+|
T Consensus 68 ~c~~~~gy~AVyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~G 147 (426)
T KOG2592|consen 68 DCGKLLGYKAVYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFG 147 (426)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHHh
Confidence 777 7899999885 777777765443333322 1356788887777665544444 445556666666
Q ss_pred HHH
Q 007833 145 TIL 147 (588)
Q Consensus 145 ~~~ 147 (588)
..+
T Consensus 148 a~~ 150 (426)
T KOG2592|consen 148 AAL 150 (426)
T ss_pred HHH
Confidence 544
No 275
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=21.41 E-value=2e+02 Score=21.20 Aligned_cols=15 Identities=33% Similarity=0.228 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHH
Q 007833 135 LALVVVALSGTILLW 149 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w 149 (588)
.++.+|++.+++||-
T Consensus 7 Gal~vv~iLt~~ILv 21 (34)
T PF08113_consen 7 GALGVVMILTAFILV 21 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHH
Confidence 345566666666653
No 276
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=21.27 E-value=2e+02 Score=34.46 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.9
Q ss_pred CCCCCCcCCCCC
Q 007833 554 TDSPTAKAGSSS 565 (588)
Q Consensus 554 ~~~~~~~~~~~~ 565 (588)
.+||||+.|+|+
T Consensus 112 spPPSpPRGGGa 123 (828)
T PF04094_consen 112 SPPPSPPRGGGA 123 (828)
T ss_pred CCCCCCCCCCCC
Confidence 466778888777
No 277
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=21.26 E-value=92 Score=21.87 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhCC
Q 007833 304 VSILKREYRKKAMLVHP 320 (588)
Q Consensus 304 ~~eIKkAYRklalk~HP 320 (588)
.+|.|.+-|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47889999999999993
No 278
>COG4758 Predicted membrane protein [Function unknown]
Probab=21.24 E-value=7.1e+02 Score=25.92 Aligned_cols=17 Identities=6% Similarity=0.131 Sum_probs=7.3
Q ss_pred HHhhhhhhhHHHHHHhh
Q 007833 148 LWLYGSFWTTFFVIFLG 164 (588)
Q Consensus 148 ~w~~~~f~~~~~~~~~~ 164 (588)
+-.|..-|--.++.+++
T Consensus 41 ~~~~t~r~~~~~~~i~a 57 (235)
T COG4758 41 FRIYTTRSRASVLKIIA 57 (235)
T ss_pred HhheehhhhHHHHHHHH
Confidence 33444444444444443
No 279
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=21.02 E-value=7.1e+02 Score=26.17 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 007833 135 LALVVVALSGTILLWLYG 152 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~ 152 (588)
..++++++.|+++-|.|.
T Consensus 116 ~~~l~l~~~~~~~~~~Yt 133 (296)
T PRK05951 116 IGAVTLALLGVFLWTCYM 133 (296)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 346777788888877774
No 280
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.02 E-value=1.4e+02 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHH
Q 007833 117 FLMVLVVAALVAFFIGF-------ALALVVVALSGTIL 147 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~g~-------~~~~~iv~~~~~~~ 147 (588)
.|+++|+.-+|++.... -|.+-+||+.||++
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~iAlvGllGilv 41 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPAIALVGLLGILV 41 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 46677766666655443 24556777766655
No 281
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=20.90 E-value=8e+02 Score=24.06 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=40.3
Q ss_pred hhhhhHHHHHHhhhhccccchhhHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q 007833 152 GSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSK 218 (588)
Q Consensus 152 ~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~~~~~gw~g~~l~~nlsfls~diL~~~l~~~ 218 (588)
.+||.+...+.+.=.+|++.+ +++.+++..=...+-++|+.+++=+=...++.+..+++++
T Consensus 94 ~~~~~~v~~I~~~D~~fS~Ds------V~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~ 154 (176)
T TIGR03717 94 TTLWAAIKTIVIADAVMSLDN------VLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRF 154 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999899999999998864 3333444433445666777777777555555777776643
No 282
>PHA03237 envelope glycoprotein M; Provisional
Probab=20.88 E-value=1.2e+03 Score=26.27 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHH
Q 007833 94 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFV 160 (588)
Q Consensus 94 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~ 160 (588)
.+||++-.|-..+..+.+..++-++..+.+=.++..|+-.-+|..+=.++|..|||+-.--+..-+-
T Consensus 248 gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~rYv~vl~G~~lG~lia~~~l~~p~~~Y~~~f~ 314 (424)
T PHA03237 248 ANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSRYVHVLPGPALGLLIAYGMLAVTTHDYFNRFY 314 (424)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 4789999999999999999999999999999999999999999999999999999986666655553
No 283
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.83 E-value=1.7e+02 Score=32.08 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhcCch
Q 007833 23 TLKAAIELLERQSPM 37 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~ 37 (588)
++.++.+-+-+|+-.
T Consensus 89 ~~~ra~k~~~r~~e~ 103 (372)
T KOG2927|consen 89 VFERAKKVVARQKEI 103 (372)
T ss_pred HHHHHhhhccccccc
Confidence 344444444444433
No 284
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=20.73 E-value=1.9e+02 Score=27.97 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh-------hhhhHHHHHHhhhhccccchhhH
Q 007833 118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYG-------SFWTTFFVIFLGGLAFKFTHERL 175 (588)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~-------~f~~~~~~~~~~g~~~~~~~~~~ 175 (588)
|+.++++-+++.+-..-.|++-++..=++-..+.+ ..|-+.+++++.|.+|.++++..
T Consensus 8 l~~Lv~~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~ 72 (149)
T PF07158_consen 8 LLALVAVIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQV 72 (149)
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444332122212122 46899999999999999987543
No 285
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=20.70 E-value=2.3e+02 Score=32.78 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 007833 66 HFAKIMLLL 74 (588)
Q Consensus 66 ~~~~~~~~~ 74 (588)
.+-+++.|+
T Consensus 374 Ti~Nl~eLl 382 (527)
T PF03142_consen 374 TIHNLFELL 382 (527)
T ss_pred hHhhHhHHH
Confidence 344555443
No 286
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.69 E-value=1.8e+02 Score=31.68 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 007833 111 MVGMFKFLMVLVVAALVAFFIGFALA 136 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~~~~ 136 (588)
|..++.++++++++++++.++-.-+|
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~G 26 (409)
T TIGR00540 1 MFKVLFLFLLLIAGIVAGPMIAGHQG 26 (409)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44444455555555555555544443
No 287
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=20.62 E-value=8.6e+02 Score=24.30 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 007833 96 SFFSVIWCSILSVIAMVGMFKFLMV 120 (588)
Q Consensus 96 ~~~~~~w~~~~~~~~~~~~~~~~~~ 120 (588)
++...+-.++++..-..|..+..+-
T Consensus 49 ~~~~~ii~~lv~~~l~~G~~~~~L~ 73 (243)
T PF06161_consen 49 SFISIIIVSLVSGPLSAGYSFFYLD 73 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443
No 288
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=20.47 E-value=5.7e+02 Score=27.17 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 007833 135 LALVVVALSGTILLWLYGS 153 (588)
Q Consensus 135 ~~~~iv~~~~~~~~w~~~~ 153 (588)
+..+.+++.++++.|+|..
T Consensus 132 ~~~~~l~l~~~~~~~~Yt~ 150 (314)
T PRK07566 132 PWVFLAALLGLFLAWIYSA 150 (314)
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 4445667777777787773
No 289
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=20.46 E-value=76 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=12.6
Q ss_pred HhhhhhhhHHHHHHhhhhc
Q 007833 149 WLYGSFWTTFFVIFLGGLA 167 (588)
Q Consensus 149 w~~~~f~~~~~~~~~~g~~ 167 (588)
|+..+..|+..++++.|++
T Consensus 16 Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 16 WIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666677777765
No 290
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.44 E-value=52 Score=23.16 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=10.5
Q ss_pred ccccccCccceeeeccCccccccccccc
Q 007833 403 ACKKCNNFHVWIETKKSKASARWCQECN 430 (588)
Q Consensus 403 ~C~kC~GsG~~~~t~k~~~~ar~C~~C~ 430 (588)
-|+.|++.- .......++.|+.|+
T Consensus 5 fC~~CG~~t----~~~~~g~~r~C~~Cg 28 (32)
T PF09297_consen 5 FCGRCGAPT----KPAPGGWARRCPSCG 28 (32)
T ss_dssp B-TTT--BE----EE-SSSS-EEESSSS
T ss_pred ccCcCCccc----cCCCCcCEeECCCCc
Confidence 477776642 122334566777775
No 291
>TIGR03155 sulfolob_CbsB cytochrome b558/566, subunit B. Members of this protein family are CbsB, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=20.37 E-value=1e+03 Score=25.20 Aligned_cols=45 Identities=20% Similarity=0.509 Sum_probs=25.5
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007833 89 FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGF 133 (588)
Q Consensus 89 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (588)
+.|+|+.+|..-.-.-.+--+-++--.|.|+-++++-++.-|+-+
T Consensus 42 L~~iGni~fY~~fv~l~lvSills~kykaLlplti~LlISpf~~L 86 (302)
T TIGR03155 42 LLRIGNVSFYIFFISLLLVSLLLSNKYKALLPLTIVLIISPFLAL 86 (302)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 468999988654322222222234456677777777666555433
No 292
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=20.31 E-value=4.9e+02 Score=27.18 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 007833 57 YPVALNHLGHFAKIMLLLSMLW 78 (588)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
+|-=.+....+|.++++..++|
T Consensus 8 ~~~er~k~~~~G~~vl~ta~la 29 (301)
T PF14362_consen 8 SPAERNKYAGIGAAVLFTALLA 29 (301)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666655554
No 293
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=20.25 E-value=1.1e+02 Score=25.29 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 308 KREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 308 KkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
.+.+|+..+.-||+.. ..+.-+.|.+.|..|++.++...++..
T Consensus 13 ~~~~r~~~~~~~p~~~-----~~eisk~~g~~Wk~ls~eeK~~y~~~A 55 (77)
T cd01389 13 RQDKHAQLKTENPGLT-----NNEISRIIGRMWRSESPEVKAYYKELA 55 (77)
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4567777888899874 357889999999999988887766654
No 294
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=20.22 E-value=4.5e+02 Score=27.37 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhh
Q 007833 303 DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344 (588)
Q Consensus 303 s~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLs 344 (588)
.+.-+||.|++||+-.--.... +..|..+.+-|-|++|.
T Consensus 94 ~~~l~~ksykqla~d~gmqi~~---~~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 94 PETLPKKSYKQLARDMGMQIVN---EPSEHMLGLLELYEYLK 132 (268)
T ss_pred hhhcchHHHHHHHHHhCceecC---CchHHHHHHHHHHHhcC
Confidence 3566899999999876544332 22467777788888774
No 295
>PF15125 TMEM238: TMEM238 protein family
Probab=20.19 E-value=3.3e+02 Score=22.93 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=12.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhh
Q 007833 128 AFFIGFALALVVVALSGTILLWLYGS 153 (588)
Q Consensus 128 ~~~~g~~~~~~iv~~~~~~~~w~~~~ 153 (588)
.-++.|+.+++|.-=..--|+|+.+|
T Consensus 32 ~D~lvY~GaliiflSL~~Wv~WYtgN 57 (65)
T PF15125_consen 32 YDFLVYTGALIIFLSLLWWVFWYTGN 57 (65)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 34455666555543333334444443
No 296
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=20.15 E-value=60 Score=23.47 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=13.0
Q ss_pred cccccccCccceeeeccCccccccccccc
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECN 430 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~ 430 (588)
..|+.|++.++.. +...-..|..|+
T Consensus 4 ~~C~~C~~~~i~~----~~~~~~~C~~Cg 28 (33)
T PF08792_consen 4 KKCSKCGGNGIVN----KEDDYEVCIFCG 28 (33)
T ss_pred eEcCCCCCCeEEE----ecCCeEEcccCC
Confidence 4566666665322 223345666664
Done!