Query 007833
Match_columns 588
No_of_seqs 365 out of 2367
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 99.9 5.7E-23 1.9E-27 214.7 4.0 69 286-357 26-94 (329)
2 2yua_A Williams-beuren syndrom 99.8 4.7E-20 1.6E-24 161.0 7.1 70 288-359 17-86 (99)
3 2dn9_A DNAJ homolog subfamily 99.8 3.7E-20 1.2E-24 154.7 6.1 68 287-356 6-73 (79)
4 2ctq_A DNAJ homolog subfamily 99.8 1.4E-19 4.9E-24 161.4 8.2 69 288-358 20-88 (112)
5 1hdj_A Human HSP40, HDJ-1; mol 99.8 1.3E-19 4.3E-24 150.8 6.2 67 288-357 3-69 (77)
6 2ctp_A DNAJ homolog subfamily 99.8 1.5E-19 5E-24 150.8 5.6 68 287-357 6-73 (78)
7 1wjz_A 1700030A21RIK protein; 99.8 1.1E-19 3.9E-24 156.3 4.6 69 287-357 15-89 (94)
8 2ctr_A DNAJ homolog subfamily 99.8 2.8E-19 9.7E-24 152.7 6.9 67 288-357 7-73 (88)
9 2ctw_A DNAJ homolog subfamily 99.8 4.5E-19 1.6E-23 157.5 8.5 68 288-357 17-84 (109)
10 2ys8_A RAB-related GTP-binding 99.8 6.4E-19 2.2E-23 151.4 9.1 71 279-352 18-88 (90)
11 2cug_A Mkiaa0962 protein; DNAJ 99.8 4.9E-19 1.7E-23 151.2 8.2 67 288-357 17-83 (88)
12 2ej7_A HCG3 gene; HCG3 protein 99.8 2.4E-19 8.2E-24 150.7 6.1 67 288-356 9-76 (82)
13 2och_A Hypothetical protein DN 99.8 2.7E-19 9.1E-24 147.5 5.4 68 284-356 4-71 (73)
14 2l6l_A DNAJ homolog subfamily 99.8 3.1E-19 1.1E-23 167.3 6.2 71 287-359 9-85 (155)
15 2lgw_A DNAJ homolog subfamily 99.8 7.6E-19 2.6E-23 153.7 7.1 68 288-357 2-70 (99)
16 1bq0_A DNAJ, HSP40; chaperone, 99.8 2.1E-19 7.2E-24 157.8 3.5 68 288-357 3-70 (103)
17 2dmx_A DNAJ homolog subfamily 99.8 6E-19 2.1E-23 151.6 5.8 67 288-356 9-76 (92)
18 2o37_A Protein SIS1; HSP40, J- 99.8 4.9E-19 1.7E-23 152.5 5.2 69 284-357 4-72 (92)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.9E-18 6.5E-23 153.0 5.0 70 287-358 14-87 (109)
20 3apq_A DNAJ homolog subfamily 99.7 4.7E-18 1.6E-22 163.9 5.4 68 288-357 2-69 (210)
21 1nlt_A Protein YDJ1, mitochond 99.7 3.6E-17 1.2E-21 164.6 6.1 125 394-536 31-160 (248)
22 1iur_A KIAA0730 protein; DNAJ 99.6 5.6E-17 1.9E-21 139.2 4.3 64 288-353 16-80 (88)
23 3hho_A CO-chaperone protein HS 99.6 1.2E-16 4.1E-21 153.0 5.7 71 287-357 3-78 (174)
24 1gh6_A Large T antigen; tumor 99.6 2.7E-17 9.2E-22 147.6 0.7 63 288-356 8-72 (114)
25 2qwo_B Putative tyrosine-prote 99.6 1E-16 3.5E-21 138.8 3.9 63 281-345 25-91 (92)
26 1n4c_A Auxilin; four helix bun 99.6 1.9E-16 6.5E-21 152.6 5.2 63 288-352 117-182 (182)
27 1fpo_A HSC20, chaperone protei 99.6 1.9E-16 6.5E-21 151.3 4.6 69 289-357 2-75 (171)
28 3bvo_A CO-chaperone protein HS 99.6 2.9E-16 9.9E-21 154.3 5.9 70 288-357 43-117 (207)
29 2pf4_E Small T antigen; PP2A, 99.6 9.6E-17 3.3E-21 153.7 2.1 64 288-357 11-76 (174)
30 1faf_A Large T antigen; J doma 99.6 3.2E-16 1.1E-20 131.7 4.3 60 288-353 11-72 (79)
31 3uo3_A J-type CO-chaperone JAC 99.5 1.5E-15 5.2E-20 146.3 3.9 66 287-356 10-81 (181)
32 3ag7_A Putative uncharacterize 99.5 1.9E-15 6.6E-20 133.9 2.8 58 288-348 41-105 (106)
33 2guz_A Mitochondrial import in 99.5 7.6E-15 2.6E-19 120.7 4.5 58 288-350 14-71 (71)
34 3apo_A DNAJ homolog subfamily 99.5 1.7E-15 5.8E-20 172.4 0.3 69 287-357 20-88 (780)
35 2ctt_A DNAJ homolog subfamily 99.2 6.8E-12 2.3E-16 110.1 5.6 84 393-495 20-103 (104)
36 2y4t_A DNAJ homolog subfamily 99.0 1.6E-10 5.6E-15 118.4 6.3 66 287-354 381-449 (450)
37 1exk_A DNAJ protein; extended 98.9 1.1E-09 3.7E-14 91.0 6.6 74 394-486 4-77 (79)
38 2guz_B Mitochondrial import in 98.5 9.7E-08 3.3E-12 77.5 4.8 50 290-345 6-58 (65)
39 3agx_A DNAJ homolog subfamily 97.5 3.8E-05 1.3E-09 73.6 2.3 63 472-536 26-91 (181)
40 3lcz_A YCZA, inhibitor of trap 96.8 0.00017 5.8E-09 56.1 -0.5 33 455-488 6-38 (53)
41 1exk_A DNAJ protein; extended 94.3 0.0088 3E-07 49.0 0.4 46 422-486 10-63 (79)
42 2bx9_A Anti-trap, AT, tryptoph 94.3 0.015 5.3E-07 45.1 1.8 28 458-486 9-36 (53)
43 2ctt_A DNAJ homolog subfamily 94.1 0.028 9.7E-07 48.7 3.2 52 400-473 44-95 (104)
44 2q2g_A HSP40 protein, heat sho 93.5 0.018 6.3E-07 54.8 1.1 52 483-535 36-90 (180)
45 2bx9_A Anti-trap, AT, tryptoph 93.4 0.0081 2.8E-07 46.6 -1.4 40 400-454 8-47 (53)
46 1c3g_A Heat shock protein 40; 92.6 0.022 7.6E-07 53.7 0.1 49 487-536 34-85 (170)
47 3lcz_A YCZA, inhibitor of trap 90.6 0.098 3.4E-06 40.5 1.8 31 400-445 8-38 (53)
48 1nlt_A Protein YDJ1, mitochond 90.0 0.1 3.5E-06 52.0 1.8 10 402-411 55-64 (248)
49 2pzi_A Probable serine/threoni 84.9 0.5 1.7E-05 52.7 3.7 46 287-342 628-675 (681)
50 3pmq_A Decaheme cytochrome C M 81.3 0.077 2.6E-06 60.2 -4.8 33 393-430 183-218 (669)
51 3w0f_A Endonuclease 8-like 3; 45.6 18 0.00062 36.9 4.5 31 403-433 253-283 (287)
52 2fiy_A Protein FDHE homolog; F 33.6 19 0.00066 37.0 2.5 31 399-429 180-214 (309)
53 2xzf_A Formamidopyrimidine-DNA 33.3 28 0.00096 34.9 3.7 27 402-430 243-269 (271)
54 3j1r_A Archaeal adhesion filam 31.5 39 0.0013 22.3 2.8 16 137-152 10-25 (26)
55 2js4_A UPF0434 protein BB2007; 29.6 21 0.00071 28.9 1.6 36 400-439 7-42 (70)
56 2pk7_A Uncharacterized protein 28.9 20 0.00069 28.9 1.4 36 400-439 7-42 (69)
57 2jr6_A UPF0434 protein NMA0874 28.4 21 0.00072 28.7 1.4 36 400-439 7-42 (68)
58 2hf1_A Tetraacyldisaccharide-1 28.4 21 0.00071 28.8 1.4 36 400-439 7-42 (68)
59 2jny_A Uncharacterized BCR; st 27.8 22 0.00074 28.6 1.4 36 400-439 9-44 (67)
60 1y0p_A Fumarate reductase flav 24.5 19 0.00065 39.1 0.7 23 459-482 66-88 (571)
61 1hry_A Human SRY; DNA, DNA-bin 24.1 75 0.0026 24.9 4.0 43 308-355 16-58 (76)
62 4a3n_A Transcription factor SO 24.1 46 0.0016 25.6 2.7 43 308-355 14-56 (71)
63 1wz6_A HMG-box transcription f 23.4 77 0.0026 25.3 4.0 43 308-355 19-61 (82)
64 3i38_A Putative chaperone DNAJ 23.1 32 0.0011 29.7 1.7 24 490-513 39-63 (109)
65 3nyb_B Protein AIR2; polya RNA 22.4 43 0.0015 27.8 2.3 60 400-477 4-63 (83)
66 1gh9_A 8.3 kDa protein (gene M 20.3 31 0.0011 28.0 0.9 33 402-440 5-37 (71)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.86 E-value=5.7e-23 Score=214.74 Aligned_cols=69 Identities=35% Similarity=0.527 Sum_probs=0.0
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..+|||+||||++ +||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||++|+.||+++.
T Consensus 26 ~~~d~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQP--TDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 3479999999999 8999999999999999999999974 6899999999999999999999999999743
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-20 Score=160.97 Aligned_cols=70 Identities=33% Similarity=0.574 Sum_probs=66.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 359 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~ 359 (588)
.|||+||||++ +++.+|||+|||+|++++|||++++++.++++|++|++||++|+||.+|+.||+.+..+
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 17 TALYDLLGVPS--TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp SHHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 69999999999 89999999999999999999999877899999999999999999999999999976543
No 3
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-20 Score=154.68 Aligned_cols=68 Identities=43% Similarity=0.593 Sum_probs=64.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
..|||+||||++ +++.+|||+|||+|++++|||++++++.++++|++|++||++|+||.+|+.||.++
T Consensus 6 ~~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 6 SGDYYQILGVPR--NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp CSCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 369999999999 89999999999999999999999877889999999999999999999999999875
No 4
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=161.36 Aligned_cols=69 Identities=39% Similarity=0.536 Sum_probs=65.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~ 358 (588)
.|||+||||++ +++.+|||+|||+|++++||||+++++.++++|++|++||++|+||.+|+.||.++..
T Consensus 20 ~d~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 20 EDYYTLLGCDE--LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCHHHHTTCCT--TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 69999999999 8999999999999999999999987789999999999999999999999999998753
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.78 E-value=1.3e-19 Score=150.82 Aligned_cols=67 Identities=42% Similarity=0.633 Sum_probs=63.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ ++|.+|||+|||+|++++|||++++ +.+.+.|+.|++||++|+||.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~--~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCSHHHHTCCT--TCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 68999999999 8999999999999999999999974 7899999999999999999999999999763
No 6
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=150.83 Aligned_cols=68 Identities=44% Similarity=0.596 Sum_probs=64.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||+||||++ +++.+|||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 6 ~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 6 SGDYYEILGVSR--GASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp SCCHHHHHTCCT--TCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 369999999999 8999999999999999999999974 8899999999999999999999999999763
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.77 E-value=1.1e-19 Score=156.30 Aligned_cols=69 Identities=32% Similarity=0.539 Sum_probs=63.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~------p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||+||||++ +++.+|||+|||+|++++|||+++.+ +.+++.|++|++||++|+||.+|+.||..+.
T Consensus 15 ~~~~y~iLgv~~--~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 15 KKDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp CSCHHHHTTCCT--TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 479999999999 89999999999999999999999743 5688999999999999999999999999763
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=152.72 Aligned_cols=67 Identities=34% Similarity=0.549 Sum_probs=63.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ +++.+|||+|||+|++++|||+++ ++.++++|++|++||++|+||.+|+.||..+.
T Consensus 7 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 7 GSYYDILGVPK--SASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CSHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 69999999999 899999999999999999999997 58899999999999999999999999999864
No 9
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=4.5e-19 Score=157.45 Aligned_cols=68 Identities=40% Similarity=0.596 Sum_probs=65.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ +++.+|||+|||+|++++|||++++++.+.++|++|++||++|+||.+|+.||.++.
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 17 ESLYHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 69999999999 899999999999999999999998778999999999999999999999999998764
No 10
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=151.40 Aligned_cols=71 Identities=31% Similarity=0.509 Sum_probs=66.0
Q ss_pred HHHHHhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhc
Q 007833 279 DEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY 352 (588)
Q Consensus 279 ~e~~ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~Y 352 (588)
+++.+++...|||+||||++ +++.+|||+|||+|++++||||+++ +.++++|++|++||++|+||.+|+..
T Consensus 18 ~~~~~~~~~~~~y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~~ 88 (90)
T 2ys8_A 18 DAIRRIRNSKDSWDMLGVKP--GASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGPS 88 (90)
T ss_dssp HHHHHHHTCSSHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHhcCCCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccCC
Confidence 56778889999999999999 8999999999999999999999974 78999999999999999999998753
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=4.9e-19 Score=151.24 Aligned_cols=67 Identities=37% Similarity=0.528 Sum_probs=63.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ +++.+|||+|||+|++++|||+++. +.++++|++|++||++|+||.+|+.||.++.
T Consensus 17 ~d~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 17 FDPYRVLGVSR--TASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 69999999999 8999999999999999999999974 7899999999999999999999999999763
No 12
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=150.71 Aligned_cols=67 Identities=43% Similarity=0.612 Sum_probs=63.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
.|||+||||++ +++.+|||+|||+|++++|||+++.+ +.+++.|++|++||++|+||.+|+.||.++
T Consensus 9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 9 VDYYEVLDVPR--QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp CCHHHHTTCCT--TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 69999999999 89999999999999999999999865 368899999999999999999999999875
No 13
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.76 E-value=2.7e-19 Score=147.54 Aligned_cols=68 Identities=41% Similarity=0.625 Sum_probs=61.6
Q ss_pred hhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 284 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 284 il~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
+....|||+||||++ +++.+|||+|||+|++++|||++++ +.+.|++|++||++|+||.+|+.||+++
T Consensus 4 m~~~~~~y~iLgl~~--~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 4 MVKETGYYDVLGVKP--DASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp --CCCCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCTT---CHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred ccCCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCcC---HHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 345579999999999 8999999999999999999999964 3689999999999999999999999976
No 14
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-19 Score=167.31 Aligned_cols=71 Identities=28% Similarity=0.506 Sum_probs=64.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------HHHHHHHHHHHHHHHhhhcchhhhchhhhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE------KAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 359 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p------~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~ 359 (588)
..|||+||||++ +++.+|||+|||+|++++||||++.++ .|.+.|++|++||++|+||.+|+.||..+...
T Consensus 9 ~~~~y~iLgv~~--~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 9 KKDWYSILGADP--SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CSHHHHHHTCCT--TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 369999999999 899999999999999999999997653 37799999999999999999999999987644
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-19 Score=153.71 Aligned_cols=68 Identities=43% Similarity=0.623 Sum_probs=63.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ +++.+|||+|||+|++++|||+++++ +.+++.|++|++||++|+||.+|+.||.++.
T Consensus 2 ~d~Y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPR--SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCT--TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 68999999999 89999999999999999999999865 4588999999999999999999999999864
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.75 E-value=2.1e-19 Score=157.80 Aligned_cols=68 Identities=41% Similarity=0.687 Sum_probs=64.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ ++|.+|||+|||+|++++|||+++.++.++++|++|++||++|+||.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 3 QDYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCSTTTTSSCS--SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 68999999999 899999999999999999999998778899999999999999999999999999864
No 17
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6e-19 Score=151.64 Aligned_cols=67 Identities=43% Similarity=0.597 Sum_probs=63.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
.|||+||||++ +++.+|||+|||+|++++|||+++.+ +.++++|++|++||++|+||.+|+.||..+
T Consensus 9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 9 ANYYEVLGVQA--SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCHHHHHTCCT--TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 69999999999 89999999999999999999999765 478899999999999999999999999875
No 18
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.9e-19 Score=152.54 Aligned_cols=69 Identities=39% Similarity=0.613 Sum_probs=63.1
Q ss_pred hhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 284 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 284 il~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
++...|||+||||++ +++.+|||+|||+|++++|||+++++ .++|++|++||++|+||.+|+.||.++.
T Consensus 4 m~~~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 4 MVKETKLYDLLGVSP--SANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp CCSCCHHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred cccCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 445689999999999 89999999999999999999999654 5799999999999999999999999864
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.72 E-value=1.9e-18 Score=153.03 Aligned_cols=70 Identities=31% Similarity=0.424 Sum_probs=64.6
Q ss_pred CCCcccccCcccCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833 287 CTDHYSALGLSRFENV-DVSILKREYRKKAMLVHPDKNMG---NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 358 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~a-s~~eIKkAYRklalk~HPDkn~~---~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~ 358 (588)
..|||+||||++ ++ +.+|||+|||+|++++|||++++ .+.+++.|++|++||++|+||.+|+.||..+..
T Consensus 14 ~~~~y~iLgv~~--~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 14 LENCYDVLEVNR--EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TSCHHHHTTCCG--GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCHHHHcCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 369999999999 89 99999999999999999999975 366889999999999999999999999998753
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.70 E-value=4.7e-18 Score=163.87 Aligned_cols=68 Identities=38% Similarity=0.563 Sum_probs=65.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ +|+.+|||+|||+|++++||||+++++++.++|++|++||++|+||.+|+.||+++.
T Consensus 2 ~~~y~~l~~~~--~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 58999999999 899999999999999999999998888999999999999999999999999999864
No 21
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.66 E-value=3.6e-17 Score=164.62 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=101.4
Q ss_pred CCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec-
Q 007833 394 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN- 472 (588)
Q Consensus 394 ~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~- 472 (588)
+.+.+.+.+.|+.|+|+| ++++. ..+|+.|+ |+|++... ++.++ |+|+++++|+ .|.|.|..+
T Consensus 31 k~i~~~r~~~C~~C~G~G-----~~~g~-~~~C~~C~-------G~G~~~~~-~~~g~-~~~~~~~~C~-~C~G~G~~i~ 94 (248)
T 1nlt_A 31 AKLALNKQILCKECEGRG-----GKKGA-VKKCTSCN-------GQGIKFVT-RQMGP-MIQRFQTECD-VCHGTGDIID 94 (248)
T ss_dssp EEEEEEEEEECTTTTTCS-----BSTTT-CCCCTTSS-------SSSCEEEE-EESSS-EEEEEECSCT-TCSSSSSCCC
T ss_pred EEEEeeEEEeCCCCcCcc-----CCCCC-CccCCCCC-------CCcEEEEE-EecCc-eEEEEEEcCC-CCCCcCEEec
Confidence 356678899999999998 56555 58999999 99988764 45667 8889999999 999999877
Q ss_pred -CcccccCCCceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 473 -ATDWYICQGMRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 473 -~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
.++|+.|+|.|.+.+++.++|+||+|+.|++ .+.+|.|+.+ .++|++|++..+ .+|++|++-
T Consensus 95 ~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~--~~g~~GDl~v~i~v~~h~~F~R~ 160 (248)
T 1nlt_A 95 PKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQA--PDVIPGDVVFIVSERPHKSFKRD 160 (248)
T ss_dssp TTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC--TTCBCCCEEEEEEECCCSSCEEE
T ss_pred cCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCC--CCCCcceEEEEEEEecCccceee
Confidence 9999999999999999999999999998884 3555555543 334666776666 778888763
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.65 E-value=5.6e-17 Score=139.23 Aligned_cols=64 Identities=28% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhch
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYD 353 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD 353 (588)
.++|+||||++ ++|.+|||+|||+|++++|||+++++ +.|+++|++|++||++|+|...|..++
T Consensus 16 ~~~y~vLgv~~--~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~~ 80 (88)
T 1iur_A 16 KEVTSVVEQAW--KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNA 80 (88)
T ss_dssp HHHHHHHHHTT--SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred HHHHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 58999999999 89999999999999999999999876 458999999999999999988875544
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.63 E-value=1.2e-16 Score=153.02 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=62.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||+||||++.++.+.++||++||+|++++||||+++.+. |.+.|+.|++||++|+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 369999999999433349999999999999999999986543 67899999999999999999999998764
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.63 E-value=2.7e-17 Score=147.63 Aligned_cols=63 Identities=29% Similarity=0.344 Sum_probs=58.2
Q ss_pred CCcccccCcccCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 288 TDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~--~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
.+||+||||++ +++. +|||+|||+|++++||||+++ +++|++|++||++|+||.+|+.||.++
T Consensus 8 ~~~Y~iLgv~~--~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 8 LQLMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHTTCCT--TSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhHHHHcCCCC--CCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 58999999999 7777 999999999999999999974 489999999999999999999999754
No 25
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.63 E-value=1e-16 Score=138.79 Aligned_cols=63 Identities=25% Similarity=0.421 Sum_probs=56.0
Q ss_pred HHHhhcC-CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHhhh
Q 007833 281 VVRLLNC-TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFD 345 (588)
Q Consensus 281 ~~ril~~-~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p---~A~e~Fk~I~~AYevLsD 345 (588)
+.+++.. .++|++|||++ +||.+|||+|||++|+++|||||++++ .|+++|++|++||+||.+
T Consensus 25 l~~~L~~~~~~y~~Lgv~~--~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 25 MHTVLWAGETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp GGGTSCTTCCSCCCCCGGG--SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccCCeecCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 3456666 49999999999 899999999999999999999998765 388999999999999986
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=1.9e-16 Score=152.63 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=59.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHhhhcchhhhc
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAY 352 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~---A~e~Fk~I~~AYevLsD~~kR~~Y 352 (588)
.|||+||||++ +++.+|||+|||++++++||||+++++. |+++|++|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~--~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGG--GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCC--CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 58999999999 8999999999999999999999976543 889999999999999999999988
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.61 E-value=1.9e-16 Score=151.29 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=61.0
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
|||+||||++.++.|.++||++||+|++++||||+++++. |.+.|+.|++||++|+||.+|+.||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 7999999999333399999999999999999999986543 56899999999999999999999998754
No 28
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=154.34 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=62.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++..++|.++||++||+|++++||||+++++. |.+.|++|++||+||+||.+|+.||..+.
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 69999999999545899999999999999999999976432 56789999999999999999999997643
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.61 E-value=9.6e-17 Score=153.73 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=56.3
Q ss_pred CCcccccCcccCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 288 TDHYSALGLSRFENVD--VSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as--~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
.|||+||||++ +|+ .+|||+|||++|+++||||+++ +++|++|++||++|+||.+|+.||+++.
T Consensus 11 ~d~Y~vLGl~~--~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCG--GGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCC--CCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 58999999999 666 6999999999999999999965 3899999999999999999999999863
No 30
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.60 E-value=3.2e-16 Score=131.67 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=55.0
Q ss_pred CCcccccCcccCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhch
Q 007833 288 TDHYSALGLSRFEN--VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYD 353 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~--as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD 353 (588)
.++|+||||++ + ++.+|||+|||+|++++|||++++ +++|++|++||++|+|+.+|..+|
T Consensus 11 ~~~y~iLgl~~--~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPR--QLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCS--SSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 47999999999 7 999999999999999999999853 589999999999999999998744
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.54 E-value=1.5e-15 Score=146.33 Aligned_cols=66 Identities=30% Similarity=0.472 Sum_probs=59.9
Q ss_pred CCCccccc------CcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833 287 CTDHYSAL------GLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356 (588)
Q Consensus 287 ~~d~Y~IL------Gv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~ 356 (588)
..|||+|| |+++. ++|.++||+|||+|++++||||+++ +.+.|+.|++||++|+||.+|+.||..+
T Consensus 10 ~~d~y~ll~~~~p~~~~~~-~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIW-TIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCS-CCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCC-CCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 37999999 46653 7999999999999999999999964 7899999999999999999999999976
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.53 E-value=1.9e-15 Score=133.88 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=51.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----HHHHHHHHHHHHHHHhhhcch
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---NE----KAVEAFKKLQNAYEVLFDSFK 348 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~---~p----~A~e~Fk~I~~AYevLsD~~k 348 (588)
.|||+|||++. ||.+|||+|||++++++|||||++ ++ .|+++|++|++||++|+|+..
T Consensus 41 ~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 41 SGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp SCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 59999999985 799999999999999999999863 11 478999999999999999863
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7.6e-15 Score=120.74 Aligned_cols=58 Identities=24% Similarity=0.187 Sum_probs=51.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhh
Q 007833 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350 (588)
Q Consensus 288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~ 350 (588)
.++|+||||++. ++|.+|||+|||+|++++|||++. + .+.|++|++||++|+|+..|+
T Consensus 14 ~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g-~---~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 14 KEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGG-S---PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTC-C---HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHhhhhhcC
Confidence 579999999982 389999999999999999999974 2 479999999999999988774
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.50 E-value=1.7e-15 Score=172.40 Aligned_cols=69 Identities=38% Similarity=0.540 Sum_probs=40.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~ 357 (588)
..|||+||||++ +||.+|||+|||+|++++||||+++++.|+++|++|++||++|+||.+|+.||+++.
T Consensus 20 ~~~~y~~lg~~~--~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 20 DQNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp ---CHHHHTCCT--TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 379999999999 899999999999999999999998778899999999999999999999999999874
No 35
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.8e-12 Score=110.14 Aligned_cols=84 Identities=17% Similarity=0.404 Sum_probs=71.4
Q ss_pred CCCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec
Q 007833 393 DDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 472 (588)
Q Consensus 393 E~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~ 472 (588)
+..+.+.+.+.|+.|+|+| .+++.....|+.|+ |+|++... + |+++ .+.+|+ .|.|.|..+
T Consensus 20 ~~~i~~~~~~~C~~C~G~G-----~~~g~~~~~C~~C~-------G~G~~~~~-~----G~~~-~~~~C~-~C~G~G~~i 80 (104)
T 2ctt_A 20 NKEFTVNIMDTCERCNGKG-----NEPGTKVQHCHYCG-------GSGMETIN-T----GPFV-MRSTCR-RCGGRGSII 80 (104)
T ss_dssp CTTCCSSCCEECSSSSSSS-----SCTTCCCEECSSSS-------SSCEEEEE-E----TTEE-EEEECS-SSSSSSEEC
T ss_pred EEEEEeeeeeECCCCcCCc-----cCCCCCCccCCCCC-------CCEEEEEE-e----CCEE-EEEECC-cCCCcceEC
Confidence 4567889999999999998 66667788999999 99988653 2 3343 567899 999999999
Q ss_pred CcccccCCCceeccceeEEEEEe
Q 007833 473 ATDWYICQGMRCPANTHKPSFHV 495 (588)
Q Consensus 473 ~~~C~~C~G~G~~~~t~~v~V~V 495 (588)
.++|+.|+|.|.+.+++.++|++
T Consensus 81 ~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 81 ISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SSCCSSSSSCSEECCCCSSCCSC
T ss_pred CCcCCCCCCeeEEEEEEEEEEEc
Confidence 99999999999999999988876
No 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.03 E-value=1.6e-10 Score=118.35 Aligned_cols=66 Identities=38% Similarity=0.516 Sum_probs=56.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHhhhcchhhhchh
Q 007833 287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDD 354 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~---p~A~e~Fk~I~~AYevLsD~~kR~~YD~ 354 (588)
..++|++||+.+ .++.++|+++|+++++++|||+.+.+ +.++++|++|++||++|+||++|+.||.
T Consensus 381 ~~~~y~~lg~~~--~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKR--NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSST--TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCc--cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 469999999999 78899999999999999999999753 3488999999999999999999999997
No 37
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.94 E-value=1.1e-09 Score=91.02 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=60.8
Q ss_pred CCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC
Q 007833 394 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA 473 (588)
Q Consensus 394 ~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~ 473 (588)
..+.+.+.+.|+.|+|+| ..+......|+.|+ |+|.+.. .+ |+++ .+.+|+ .|.|.|....
T Consensus 4 ~~i~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~----g~~~-~~~~C~-~C~G~G~~~~ 64 (79)
T 1exk_A 4 KEIRIPTLEECDVCHGSG-----AKPGTQPQTCPTCH-------GSGQVQM-RQ----GFFA-VQQTCP-HCQGRGTLIK 64 (79)
T ss_dssp TSCCCCCEEECGGGTTTS-----BCSSSCCEECTTTT-------TSSEEEE-EE----TTEE-EEEECT-TTTTSSEECS
T ss_pred EEEEcccceECCCCcccc-----cCCCccCCCCCCCc-------CeEEEEE-Ec----CCCE-EeeECc-CCCCccEECC
Confidence 567789999999999998 44455567999999 9998765 22 4554 677899 9999999999
Q ss_pred cccccCCCceecc
Q 007833 474 TDWYICQGMRCPA 486 (588)
Q Consensus 474 ~~C~~C~G~G~~~ 486 (588)
++|+.|+|.|.+.
T Consensus 65 ~~C~~C~G~G~~~ 77 (79)
T 1exk_A 65 DPCNKCHGHGRVE 77 (79)
T ss_dssp SBCGGGTTSSEEE
T ss_pred CcCCCCCCeEEEe
Confidence 9999999999764
No 38
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=9.7e-08 Score=77.46 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=43.9
Q ss_pred cccccCcccCCC---CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 007833 290 HYSALGLSRFEN---VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 345 (588)
Q Consensus 290 ~Y~ILGv~~~~~---as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD 345 (588)
-|.||||++ + ++.++||++||+|....||||... .-...+|++|+++|..
T Consensus 6 A~~ILgv~~--~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 6 SCKILNIEE--SKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHTTCCG--GGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHH
Confidence 478999999 7 899999999999999999999743 4667789999999964
No 39
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=97.45 E-value=3.8e-05 Score=73.62 Aligned_cols=63 Identities=6% Similarity=-0.022 Sum_probs=47.1
Q ss_pred cCcccccCCCceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 472 NATDWYICQGMRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 472 ~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
...+|..|+|.|.+.+++.++|+||+|+.+++ .+.+|.|..+. ++|++|++..+ .+|++|.+-
T Consensus 26 i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~--~g~~GDl~v~i~~~~h~~F~R~ 91 (181)
T 3agx_A 26 ISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS--NNIPADIVFVLKDKPHNIFKRD 91 (181)
T ss_dssp EEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS--SSCCCCEEEEEEECCCSSCEEE
T ss_pred EecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC--CCCcccEEEEEEEeccccceee
Confidence 34568999999999999999999999998884 35555555443 34666766666 777777653
No 40
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.77 E-value=0.00017 Score=56.13 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=28.1
Q ss_pred EEEEecccccCCCceeecCcccccCCCceeccce
Q 007833 455 QKVDVPCAYVCANSRIYNATDWYICQGMRCPANT 488 (588)
Q Consensus 455 qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t 488 (588)
|+++++|+ .|.|+|..+.++|+.|+|.|.+...
T Consensus 6 qq~~~~C~-~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 6 DDLETTCP-NCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HHHEEECT-TTTTSCEETTEECTTTTTSSEEECH
T ss_pred CceeccCc-CCcccccCCCCcCCCCCCcEEEEEE
Confidence 35577999 8999999999999999999976543
No 41
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=94.34 E-value=0.0088 Score=49.03 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=34.1
Q ss_pred cccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC--------cccccCCCceecc
Q 007833 422 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA--------TDWYICQGMRCPA 486 (588)
Q Consensus 422 ~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~--------~~C~~C~G~G~~~ 486 (588)
....|+.|+ |+|.... ....+|+ .|.|.|.... ..|+.|+|.|.+.
T Consensus 10 ~~~~C~~C~-------G~G~~~~-----------~~~~~C~-~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 10 TLEECDVCH-------GSGAKPG-----------TQPQTCP-TCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp CEEECGGGT-------TTSBCSS-----------SCCEECT-TTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred cceECCCCc-------ccccCCC-----------ccCCCCC-CCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 457899999 9995321 1134799 8999996643 5999999999654
No 42
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=94.33 E-value=0.015 Score=45.05 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=20.6
Q ss_pred EecccccCCCceeecCcccccCCCceecc
Q 007833 458 DVPCAYVCANSRIYNATDWYICQGMRCPA 486 (588)
Q Consensus 458 q~~C~y~C~GsGi~~~~~C~~C~G~G~~~ 486 (588)
+.+|+ .|.|+|.....+|+.|+|.|.+.
T Consensus 9 ~~~C~-~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 9 EVACP-KCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp EEECT-TTTTSSEETTEECTTTTTSSEEE
T ss_pred cccCC-CCcceeccCCCCCccCCCCccEE
Confidence 34677 78888777777888888887644
No 43
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.10 E-value=0.028 Score=48.66 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=35.2
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA 473 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~ 473 (588)
....|+.|+|+|........-.....|+.|+ |.|.+. ..+|+ .|.|.|....
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~-------G~G~~i--------------~~~C~-~C~G~G~v~~ 95 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCG-------GRGSII--------------ISPCV-VCRGAGQAKQ 95 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSS-------SSSEEC--------------SSCCS-SSSSCSEECC
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCC-------CcceEC--------------CCcCC-CCCCeeEEEE
Confidence 3468999999984332211112346899999 999653 24799 8999986643
No 44
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=93.55 E-value=0.018 Score=54.76 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=37.3
Q ss_pred eeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833 483 RCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW 535 (588)
Q Consensus 483 G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w 535 (588)
+.+.+++.++|+||+|+.+++ .+.+|.|..+.. +++++|++..+ .+|++|.+
T Consensus 36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~~~~h~~F~R 90 (180)
T 2q2g_A 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQTKTHPRFTR 90 (180)
T ss_dssp EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEEECCCSSCEE
T ss_pred ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEEEEecccEEE
Confidence 778889999999999998884 355565554333 34556666655 77777765
No 45
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=93.39 E-value=0.0081 Score=46.63 Aligned_cols=40 Identities=20% Similarity=0.490 Sum_probs=27.1
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeE
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF 454 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~ 454 (588)
....|+.|+|+| ... ...|+.|+ |+|.+.....+.++|++
T Consensus 8 ~~~~C~~C~GsG-----~~~---~~~C~~C~-------G~G~v~~~qG~~~~g~~ 47 (53)
T 2bx9_A 8 LEVACPKCERAG-----EIE---GTPCPACS-------GKGVILTAQGYTLLDFI 47 (53)
T ss_dssp HEEECTTTTTSS-----EET---TEECTTTT-------TSSEEECHHHHHHHHHH
T ss_pred ccccCCCCccee-----ccC---CCCCccCC-------CCccEEEEecccHHHHH
Confidence 456899999998 222 36799999 99988764323444443
No 46
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=92.58 E-value=0.022 Score=53.69 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=33.8
Q ss_pred ceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833 487 NTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL 536 (588)
Q Consensus 487 ~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl 536 (588)
+.+.++|+||+|+.+++ .+.+|.|..+.++ +|++|++..+ .+|++|.+-
T Consensus 34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~~h~~F~R~ 85 (170)
T 1c3g_A 34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHPNFKRD 85 (170)
T ss_dssp EEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEECCCSSEEEE
T ss_pred EeEEEEEEeCCCccCCCEEEEeccccCCCCC-CccccEEEEEEEccCCccEEe
Confidence 88999999999998884 3556666544444 3455665555 777777653
No 47
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=90.57 E-value=0.098 Score=40.50 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=23.0
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEe
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQS 445 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~ 445 (588)
....|+.|+|+| ... ...|+.|+ |+|.+...
T Consensus 8 ~~~~C~~C~GsG-----~~i---~~~C~~C~-------G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSG-----REE---PEPCPKCL-------GKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSC-----EET---TEECTTTT-------TSSEEECH
T ss_pred eeccCcCCcccc-----cCC---CCcCCCCC-------CcEEEEEE
Confidence 356899999997 221 26799999 99987653
No 48
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=89.99 E-value=0.1 Score=52.04 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=5.9
Q ss_pred cccccccCcc
Q 007833 402 IACKKCNNFH 411 (588)
Q Consensus 402 v~C~kC~GsG 411 (588)
..|+.|+|+|
T Consensus 55 ~~C~~C~G~G 64 (248)
T 1nlt_A 55 KKCTSCNGQG 64 (248)
T ss_dssp CCCTTSSSSS
T ss_pred ccCCCCCCCc
Confidence 4566666665
No 49
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=84.89 E-value=0.5 Score=52.75 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=35.6
Q ss_pred CCCcccccCcccCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 007833 287 CTDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEV 342 (588)
Q Consensus 287 ~~d~Y~ILGv~~~~~as~--~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYev 342 (588)
..|||.+||++. +... .+|++|||++|+..++| .+++..+..|+.|
T Consensus 628 ~~~~~~~lG~~~--~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPF--TSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEES--SHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCC--ChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 358999999977 3333 66999999999976444 4788888888875
No 50
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=81.29 E-value=0.077 Score=60.16 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCCCCcccccccccccCccceeeeccCcc---ccccccccc
Q 007833 393 DDPFGESRRIACKKCNNFHVWIETKKSKA---SARWCQECN 430 (588)
Q Consensus 393 E~~~~isr~v~C~kC~GsG~~~~t~k~~~---~ar~C~~C~ 430 (588)
++.+.+.+...|..|+|+| .+.+. .+.+|+.|+
T Consensus 183 ~k~i~v~~~~~C~tCHGsG-----A~~Gt~~~~~~tC~tCH 218 (669)
T 3pmq_A 183 AYTRNLVSIDTCNSCHSNL-----AFHGGRYNQVETCVTCH 218 (669)
T ss_dssp CCCCCCCCSHHHHHHHSSC-----CTTTTTSCSSSCSTTTS
T ss_pred ceEEEeccCCcCCCCCCCC-----CcCCccCcCCccCCCCC
Confidence 4567788999999999998 55555 578999998
No 51
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=45.56 E-value=18 Score=36.88 Aligned_cols=31 Identities=16% Similarity=0.490 Sum_probs=19.8
Q ss_pred ccccccCccceeeeccCcccccccccccccc
Q 007833 403 ACKKCNNFHVWIETKKSKASARWCQECNDYH 433 (588)
Q Consensus 403 ~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h 433 (588)
+|+.|+..=..+.-+..+....+|+.|+.+|
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCccccc
Confidence 8999987532222232356788999998544
No 52
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.58 E-value=19 Score=36.99 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=16.8
Q ss_pred ccccccccccCccc--eeee-c-cCcccccccccc
Q 007833 399 SRRIACKKCNNFHV--WIET-K-KSKASARWCQEC 429 (588)
Q Consensus 399 sr~v~C~kC~GsG~--~~~t-~-k~~~~ar~C~~C 429 (588)
.....|+.|++.-. .+.. + ..+.+.-.|..|
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C 214 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLC 214 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTT
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCC
Confidence 34567888987653 1111 1 233345668888
No 53
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=33.35 E-value=28 Score=34.86 Aligned_cols=27 Identities=19% Similarity=0.548 Sum_probs=15.4
Q ss_pred cccccccCccceeeeccCccccccccccc
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECN 430 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~ 430 (588)
.+|+.|++. +.. ....+....+|+.|+
T Consensus 243 ~pC~~CG~~-I~~-~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAE-IQK-IKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCB-CEE-EEETTEEEEECTTTS
T ss_pred CCCCCCCCE-eeE-EEECCCceEECCCCC
Confidence 568888664 211 122345567788886
No 54
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=31.47 E-value=39 Score=22.34 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 007833 137 LVVVALSGTILLWLYG 152 (588)
Q Consensus 137 ~~iv~~~~~~~~w~~~ 152 (588)
+.++++.+.|++|++.
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555666665543
No 55
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.63 E-value=21 Score=28.94 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=23.2
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCC
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 439 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~ 439 (588)
.-..|+.|+|. . .-......-.|+.|+...+++||-
T Consensus 7 ~iL~CP~ck~~-L---~~~~~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 7 DILVCPVCKGR-L---EFQRAQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CCCBCTTTCCB-E---EEETTTTEEEETTTTEEEEEETTE
T ss_pred hheECCCCCCc-C---EEeCCCCEEEcCCCCceecCCCCe
Confidence 34679999985 1 122223456799998777777553
No 56
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.86 E-value=20 Score=28.90 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=23.2
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCC
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 439 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~ 439 (588)
....|+.|+|.= .-......-.|+.|+...+.+||-
T Consensus 7 eiL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI~dGI 42 (69)
T 2pk7_A 7 DILACPICKGPL----KLSADKTELISKGAGLAYPIRDGI 42 (69)
T ss_dssp GTCCCTTTCCCC----EECTTSSEEEETTTTEEEEEETTE
T ss_pred hheeCCCCCCcC----eEeCCCCEEEcCCCCcEecCcCCe
Confidence 346799999852 112233456799998777777553
No 57
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.37 E-value=21 Score=28.74 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=23.0
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCC
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 439 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~ 439 (588)
.-..|+.|+|. .. -......-.|+.|+...+++||-
T Consensus 7 ~iL~CP~ck~~-L~---~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2jr6_A 7 DILVCPVTKGR-LE---YHQDKQELWSRQAKLAYPIKDGI 42 (68)
T ss_dssp CCCBCSSSCCB-CE---EETTTTEEEETTTTEEEEEETTE
T ss_pred hheECCCCCCc-Ce---EeCCCCEEEcCCCCcEecCCCCe
Confidence 34579999985 11 12223456799998777777553
No 58
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.36 E-value=21 Score=28.77 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=23.3
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCC
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 439 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~ 439 (588)
.-..|+.|+|. .. -......-.|+.|+...+++||-
T Consensus 7 ~iL~CP~ck~~-L~---~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2hf1_A 7 EILVCPLCKGP-LV---FDKSKDELICKGDRLAFPIKDGI 42 (68)
T ss_dssp EECBCTTTCCB-CE---EETTTTEEEETTTTEEEEEETTE
T ss_pred hheECCCCCCc-Ce---EeCCCCEEEcCCCCcEecCCCCe
Confidence 34689999985 11 12223456799998777777553
No 59
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.79 E-value=22 Score=28.64 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=23.5
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCC
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 439 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~ 439 (588)
.-..|+.|+|. . ........-.|+.|+...+++||-
T Consensus 9 eiL~CP~ck~~-L---~~~~~~g~LvC~~c~~~YPI~dGI 44 (67)
T 2jny_A 9 EVLACPKDKGP-L---RYLESEQLLVNERLNLAYRIDDGI 44 (67)
T ss_dssp CCCBCTTTCCB-C---EEETTTTEEEETTTTEEEEEETTE
T ss_pred HHhCCCCCCCc-C---eEeCCCCEEEcCCCCccccCCCCE
Confidence 34579999984 1 112233456799998777777653
No 60
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=24.48 E-value=19 Score=39.10 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=16.4
Q ss_pred ecccccCCCceeecCcccccCCCc
Q 007833 459 VPCAYVCANSRIYNATDWYICQGM 482 (588)
Q Consensus 459 ~~C~y~C~GsGi~~~~~C~~C~G~ 482 (588)
..|. .|...-......|..|+..
T Consensus 66 ~~C~-~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 66 VACT-SCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CCGG-GTCCSSSCBCCGGGGTCCC
T ss_pred CCcc-ccCccccCCCccccccChh
Confidence 4688 7887654566778888875
No 61
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=24.11 E-value=75 Score=24.87 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 308 KREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 308 KkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
.+.+|...+.-||+.... +.-+.|.+.|..|++.+|....|..
T Consensus 16 ~~~~r~~~~~~~p~~~~~-----eisk~lg~~Wk~ls~~eK~~y~~~A 58 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-----EISKQLGYQWKMLTEAEKWPFFQEA 58 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-----HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-----HHHHHHHhHHHhCCHHHHHHHHHHH
Confidence 455666667779987643 6778999999999988776666653
No 62
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=24.07 E-value=46 Score=25.62 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 308 KREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 308 KkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
.+.+|...+.-|||.. ..+.-+.|.+.|..|++.+|....|..
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~~A 56 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFVEEA 56 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4566777778888876 357889999999999988877666543
No 63
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=23.44 E-value=77 Score=25.29 Aligned_cols=43 Identities=26% Similarity=0.125 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833 308 KREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355 (588)
Q Consensus 308 KkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~ 355 (588)
.+.+|...+.-||+... .+.-+.|.+.|.-|++.+|....|..
T Consensus 19 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~~A 61 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN-----RGATKILADWWAVLDPKEKQKYTDMA 61 (82)
T ss_dssp HHHHHHHHHHHCSSSCT-----THHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 45566667778999764 37788999999999988776666653
No 64
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=23.09 E-value=32 Score=29.68 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=17.6
Q ss_pred EEEEEeCCcccCCC-CccccCCCCC
Q 007833 490 KPSFHVNTSVTSKH-NTSKGTSSGQ 513 (588)
Q Consensus 490 ~v~V~Vp~Gv~d~~-~r~~g~g~~~ 513 (588)
.++|.||+|+.+++ .+++|.|-..
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~ 63 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVS 63 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBC
T ss_pred CEEEeeCCCcCcCeEEEECCccCCC
Confidence 48999999998884 4666665544
No 65
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=22.44 E-value=43 Score=27.85 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=27.0
Q ss_pred cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccc
Q 007833 400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477 (588)
Q Consensus 400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~ 477 (588)
+++.|..|+..| +..+.-.....|-.|. ..|-+.... . . +..+..|. .|+..|.+ ..+|+
T Consensus 4 k~~~C~~Cg~~G---H~~~~Cp~~~rcY~c~-------~~gh~~~~c-~-~----p~~~~~CY-nCG~~GH~-~rdC~ 63 (83)
T 3nyb_B 4 KKVQCTLCKSKK---HSKERCPSIWRAYILV-------DDNEKAKPK-V-L----PFHTIYCY-NCGGKGHF-GDDCK 63 (83)
T ss_dssp ---CCSSSCCSS---SCGGGCGGGTCCCCBC--------------------------CCCBCS-SSSCBSSC-GGGCS
T ss_pred ccCCCCCCCCCC---CccccCCCcccccccc-------cCCcccccc-c-C----CCCCCeec-ccCCCCcC-cccCC
Confidence 567899998876 2233333334577776 444332111 1 0 11234676 89888864 34454
No 66
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=20.28 E-value=31 Score=28.05 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=21.4
Q ss_pred cccccccCccceeeeccCcccccccccccccccccCCCe
Q 007833 402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDG 440 (588)
Q Consensus 402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G 440 (588)
+.|+ |+-. |+ .....+...|+ |+..|+.+.-.-
T Consensus 5 v~C~-C~~~--~~--~~~~~kT~~C~-CG~~~~~~k~ri 37 (71)
T 1gh9_A 5 FRCD-CGRA--LY--SREGAKTRKCV-CGRTVNVKDRRI 37 (71)
T ss_dssp EEET-TSCC--EE--EETTCSEEEET-TTEEEECCSSSC
T ss_pred EECC-CCCE--EE--EcCCCcEEECC-CCCeeeeceEEE
Confidence 5788 8764 33 33355678898 987777665443
Done!