BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007834
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/511 (47%), Positives = 341/511 (66%), Gaps = 5/511 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELS 109
K ++F + +R AL+ G++ +A+AV VTLGP+GRNV+L + + DGVT+A+ +EL
Sbjct: 3 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D +EN GA L++EVASK ND+AGDGTTTA +LA+ +++ G+ +V+ GANP+ALK+G+ K
Sbjct: 63 DHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V+ V+ +K + PV R I+ VA+ISA ND +G L +E S S
Sbjct: 123 VEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSL 181
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
ET + EG + DKGY+SP F+TN E ++A +LI ++K+S V+E++P+LE+ Q
Sbjct: 182 ETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT 241
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+NK+RG L+VA VK PGFGD +K +L+DIA +TG +S
Sbjct: 242 GKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISE 301
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
ELG L AT LG A +V + + TTIV K +I+ARI IKK+L TD+ Y
Sbjct: 302 ELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYARE 361
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVI+VGA TE EL+++K R EDA NAT AA++EGIVPGGG T + +
Sbjct: 362 KLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAI 421
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEK--TRTSDWRFGYN 527
+ + +E DE GA IV +AL PA IA NAG +G+++V++ T + R+G+N
Sbjct: 422 SAVEELIKKLEG-DEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFN 480
Query: 528 AMTGRYEDLLSAGVADPCRVARCALQNAVSI 558
A TG + D++ AG+ DP +V R ALQNA SI
Sbjct: 481 AATGEFVDMVEAGIVDPAKVTRSALQNAASI 511
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 233/536 (43%), Positives = 342/536 (63%), Gaps = 13/536 (2%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELS 109
K++ F ++R+ + G++ LADAV VTLGPKGRNV++ +S ++ DGV++A+ IELS
Sbjct: 4 KEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELS 63
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVAS+ ND AGDGTTTA +LA+ +++ G+ +V+ G NP+ LK+G+
Sbjct: 64 DKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVA 123
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
++V+ +K + PV ++ V +ISA + FIG +E +
Sbjct: 124 TAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGM 183
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
ET + V EGM+ D+GYLSP F+TN +K + E ++A +L+ ++K+S+++ +VPLLE Q
Sbjct: 184 ETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQS 243
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLI+AED+ + L TLV+NK+RG L +A VK PGFGD +KA+LQDIA++TG +S
Sbjct: 244 QKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISE 303
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
+LG+ L T D LG A+KV++ ++TTIV KAEI+AR+ QI++ + T + Y
Sbjct: 304 DLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDRE 363
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVH-- 467
KL ER+AKL+GGVAVI+VG TE+E+++RK R++DA NAT AA+ EGIV GGG V
Sbjct: 364 KLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGA 423
Query: 468 -LLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTR-TSDWRFG 525
+LE + S + D+ G I+ +AL P IA NAGVDG +V K R +SD FG
Sbjct: 424 KVLEGL-----SGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFG 478
Query: 526 YNAMTGRYEDLLSAGVADPCRVARCALQNAVSIXXXXXXXXXXXXDKIKQPKPAVP 581
+NA T Y D+ GV DP +V R AL++A S+ +K P+P P
Sbjct: 479 FNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEK---PEPKAP 531
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/532 (46%), Positives = 336/532 (63%), Gaps = 5/532 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVI-NDGVTIARAIELS 109
K I + +E+R L+ G++ LADAV VTLGPKGRNV+L + I NDGV+IA+ IEL
Sbjct: 3 KTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D E GA L++EVA K +D+AGDGTTTA +LA+ +++ G+ +V+ GANP+ LK+G+ K
Sbjct: 63 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V+++ + L + + V ++ I A A+ISAG D+ IG+L +E S++F
Sbjct: 123 VEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIGDLIAEAMDKVGNEGVITVEESNTF 181
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + EGM+ DKGY+S F+T+ E+ ++ +L+ K+STVK+++PLLEK
Sbjct: 182 GLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGA 241
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+NKIRG VK PGFGD +KA+LQD+A++TG +S
Sbjct: 242 GKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISE 301
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+GLTL A LG ARKV V + TTIV I R+ QI++++ +D+ Y
Sbjct: 302 EVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDRE 361
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIK GA TEVEL++RK RIEDA AA++EGIV GGG T LL
Sbjct: 362 KLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVT---LL 418
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ P + + DE GA+IV AL P IA N+G++ +V EK R G NA
Sbjct: 419 QAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGLNAQ 478
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSIXXXXXXXXXXXXDKIKQPKPAVP 581
TG YEDLL+AGVADP +V R ALQNA SI DK ++ K +VP
Sbjct: 479 TGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKASVP 530
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/509 (42%), Positives = 319/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++R + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/509 (42%), Positives = 319/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++R + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 320/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++R + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ ++ D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRG--QNKDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/509 (42%), Positives = 319/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++R + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/509 (42%), Positives = 318/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++R + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 4 KDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 63
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 64 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 123
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 124 VTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 183
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 184 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 243
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 244 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 303
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 304 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 363
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 364 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 423
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G ++V + D +GYNA
Sbjct: 424 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEKPSVVANTVKGGDGNYGYNAA 481
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 482 TEEYGNMIDMGILDPTKVTRSALQYAASV 510
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 318/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++R + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 4 KDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 63
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 64 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 123
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 124 VTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 183
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 184 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 243
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 244 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 303
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 304 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 363
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+E A +AT AA++EG+V GGG + +
Sbjct: 364 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGVVAGGGVALIRVA 423
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 424 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 481
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 482 TEEYGNMIDMGILDPTKVTRSALQYAASV 510
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/509 (42%), Positives = 319/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++R + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+E A +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ ++ D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 318/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++ + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 318/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++ + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 318/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++ + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/509 (42%), Positives = 319/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++ + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ ++ D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 317/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++ + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L T V+N IRG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 317/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++ + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L T V+N IRG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 243 GKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 423 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASV 509
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/509 (42%), Positives = 317/509 (62%), Gaps = 3/509 (0%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVIN-DGVTIARAIELS 109
K + FG ++ + G++ LADAV VTLGPKGRNV+L +S I DGV++AR IEL
Sbjct: 4 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 63
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
D EN GA +++EVASK ND AGDGTTTA +LA+ +I G+ +V+ G NP+ LK+G+ K
Sbjct: 64 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 123
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
V V+ LK S P + I V +ISA +DE +G L +E +
Sbjct: 124 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 183
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
+ + V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE +
Sbjct: 184 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 243
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
PLLIIAED+ + L T V+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S
Sbjct: 244 GKPLLIIAEDVEGEALATAVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 303
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
E+G+ L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y
Sbjct: 304 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 363
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG + +
Sbjct: 364 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 423
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
+ ++ E D+ +G + +A+ P I N G + ++V + D +GYNA
Sbjct: 424 SKLADLRGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 481
Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSI 558
T Y +++ G+ DP +V R ALQ A S+
Sbjct: 482 TEEYGNMIDMGILDPTKVTRSALQYAASV 510
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/487 (45%), Positives = 306/487 (62%), Gaps = 4/487 (0%)
Query: 95 VINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVS 154
+ NDGV+IA+ IEL D E GA L++EVA K +D+AGDGTTTA +LA+ +++ G+ +V+
Sbjct: 6 ITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVA 65
Query: 155 FGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXX 214
GANP+ LK+G+ K V+++ + L + + V ++ I A A+ISAG D+ IG+L
Sbjct: 66 AGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIGDLIAEAMDK 124
Query: 215 XXXXXXXLIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKIS 274
+E S++F + + EGM+ DKGY+S F+T+ E+ ++ +L+ K+S
Sbjct: 125 VGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVS 184
Query: 275 TVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKAL 334
TVK+++PLLEK PLLIIAED+ + L TLV+NKIRG VK PGFGD +KA+
Sbjct: 185 TVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAM 244
Query: 335 LQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQ 394
LQD+A++TG +S E+GLTL A LG ARKV V + TTIV I R+ Q
Sbjct: 245 LQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQ 304
Query: 395 IKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMD 454
I++++ +D+ Y KL ER+AKL+GGVAVIK GA TEVEL++RK RIEDA AA++
Sbjct: 305 IRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVE 364
Query: 455 EGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVV 514
EGIV GGG T LL+ P + + DE GA+IV AL P IA N+G++ +V
Sbjct: 365 EGIVAGGGVT---LLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVA 421
Query: 515 EKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIXXXXXXXXXXXXDKIK 574
EK R G NA TG YEDLL+AGVADP +V R ALQNA SI DK +
Sbjct: 422 EKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPE 481
Query: 575 QPKPAVP 581
+ K +VP
Sbjct: 482 KEKASVP 488
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 130/191 (68%)
Query: 235 VEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLL 294
V EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE + PLL
Sbjct: 2 VVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLL 61
Query: 295 IIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLT 354
IIAED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S E+G+
Sbjct: 62 IIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGME 121
Query: 355 LAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSER 414
L AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y KL ER
Sbjct: 122 LEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQER 181
Query: 415 IAKLSGGVAVI 425
+AKL+GGVAVI
Sbjct: 182 VAKLAGGVAVI 192
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 127/186 (68%)
Query: 237 EGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII 296
EGM+ D+GYLSP FI E VE ++ +L+TD+KIS ++E++P+LE + PLLII
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLTDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356
AED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S ELG+ L
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLE 127
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIA 416
AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y KL ER+A
Sbjct: 128 KATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 187
Query: 417 KLSGGV 422
KL+GGV
Sbjct: 188 KLAGGV 193
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising
Residues 191-376, Mutant With Ala 262 Replaced With Leu
And Ile 267 Replaced With Met
Length = 203
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 126/186 (67%)
Query: 237 EGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII 296
EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE + PLLII
Sbjct: 18 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 77
Query: 297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356
AED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S E+G+ L
Sbjct: 78 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 137
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIA 416
AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y KL ER+A
Sbjct: 138 KATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 197
Query: 417 KLSGGV 422
KL+GGV
Sbjct: 198 KLAGGV 203
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 126/186 (67%)
Query: 237 EGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII 296
EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE + PLLII
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLVDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356
AED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S ELG+ L
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLE 127
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIA 416
AT + LG A++V + ++TTI+ +A IQ R+ QI++ + + Y KL ER+A
Sbjct: 128 KATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 187
Query: 417 KLSGGV 422
KL+GGV
Sbjct: 188 KLAGGV 193
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel
From Xenorhapdus Nematophila
Length = 201
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 126/186 (67%)
Query: 237 EGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII 296
EGM+ D+GYLSP FI E VE +N +L+ D+KIS ++E++P+LE + S PL+II
Sbjct: 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVII 72
Query: 297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356
AED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +T +S E+GL L
Sbjct: 73 AEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELE 132
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIA 416
AT + LG A++V + ++TTI+ + I AR+ QI++ + + + Y KL ER+A
Sbjct: 133 KATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYDREKLQERVA 192
Query: 417 KLSGGV 422
KL+GGV
Sbjct: 193 KLAGGV 198
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345
Length = 155
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 106/155 (68%)
Query: 237 EGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII 296
EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE + PLLII
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356
AED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S E+G+ L
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 120
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQAR 391
AT + LG A++V + ++TTI+ +A IQ R
Sbjct: 121 KATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 155
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
Length = 146
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 101/143 (70%)
Query: 237 EGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII 296
EGM+ D+GYLSP FI E VE ++ +L+ D+KIS ++E++P+LE + PLLII
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356
AED+ + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG +S E+G+ L
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 120
Query: 357 GATSDQLGIARKVTVKSNSTTIV 379
AT + LG A++V + ++TTI+
Sbjct: 121 KATLEDLGQAKRVVINKDTTTII 143
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical
Domain) Comprising Residues 192-336
Length = 145
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 97/142 (68%)
Query: 238 GMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIA 297
G + DKGY+SP F+TN E ++A +LI ++K+S V+E++P+LE+ Q PLLIIA
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 298 EDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAG 357
ED+ + L TLV+NK+RG L+VA VK PGFGD +K +L+DIA +TG +S ELG L
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 358 ATSDQLGIARKVTVKSNSTTIV 379
AT LG A +V + + TTIV
Sbjct: 121 ATLSMLGRAERVRITKDETTIV 142
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
Apical Domain
Length = 194
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 114/189 (60%)
Query: 237 EGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII 296
EG+ DKG+LS F+T+ + ++A +L+ KIS++ +++PLLEK PLLI+
Sbjct: 6 EGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIV 65
Query: 297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356
AED+ + L TLV+N IR L VK P FGD +KA L+D+A++TG ++ + G+ L
Sbjct: 66 AEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLR 125
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIA 416
+ LG AR+V V + T IV T + R ++ ++ +D+ + KL ER+A
Sbjct: 126 EVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLA 185
Query: 417 KLSGGVAVI 425
KL+GGVAVI
Sbjct: 186 KLAGGVAVI 194
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 138/519 (26%), Positives = 233/519 (44%), Gaps = 80/519 (15%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 31 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 86
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V +D
Sbjct: 87 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 146
Query: 189 D----IKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSFETSIVVEEGMKIDKG 244
A+ SI+ E ++E+ S+ VV++ K+DK
Sbjct: 147 KEILTKIAMTSITGKGAE----------KAKEKLAEIIVEAVSA-----VVDDEGKVDK- 190
Query: 245 YLSPQFITNQEKSLVEFDNAK----VLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDI 300
I ++KS D+ + VL+ +++S + +K T + LL +
Sbjct: 191 ----DLIKIEKKSGASIDDTELIKGVLVDKERVSA-----QMPKKVTDAKIALL----NC 237
Query: 301 SSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIAL---MTGADFLSGELGL-TLA 356
+ ++ ET +IR + + A K F + ++ +L+D+ +GA+ L + G+ LA
Sbjct: 238 AIEIKETETDAEIR-ITDPA--KLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLA 294
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATD--NAYLSRKLSER 414
+ GI VK + +A T A + I KDL+A D +A L + ER
Sbjct: 295 QHYLAKEGIVAARRVKKSDMEKLA-KATGANVITNI----KDLSAQDLGDAGL---VEER 346
Query: 415 IAKLSGGVAV-IKVGAH-----------TEVELEDRKLRIEDAKNATFAAMDEG-IVPGG 461
K+SG + ++ H TE +E+ ++DA +++G IV GG
Sbjct: 347 --KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGG 404
Query: 462 GATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSD 521
G+T V L + + EQ+ A AL V ++A NAG+D ++ K R +
Sbjct: 405 GSTEVELSMKLREYAEGISGR-EQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAH 463
Query: 522 WR-----FGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
G N TG ED+ GV +P RV A+Q+A
Sbjct: 464 ASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 502
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 138/519 (26%), Positives = 233/519 (44%), Gaps = 80/519 (15%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 80
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V +D
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Query: 189 D----IKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSFETSIVVEEGMKIDKG 244
A+ SI+ E ++E+ S+ VV++ K+DK
Sbjct: 141 KEILTKIAMTSITGKGAE----------KAKEKLAEIIVEAVSA-----VVDDEGKVDK- 184
Query: 245 YLSPQFITNQEKSLVEFDNAK----VLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDI 300
I ++KS D+ + VL+ +++S + +K T + LL +
Sbjct: 185 ----DLIKIEKKSGASIDDTELIKGVLVDKERVSA-----QMPKKVTDAKIALL----NC 231
Query: 301 SSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIAL---MTGADFLSGELGL-TLA 356
+ ++ ET +IR + + A K F + ++ +L+D+ +GA+ L + G+ LA
Sbjct: 232 AIEIKETETDAEIR-ITDPA--KLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLA 288
Query: 357 GATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATD--NAYLSRKLSER 414
+ GI VK + +A T A + I KDL+A D +A L + ER
Sbjct: 289 QHYLAKEGIVAARRVKKSDMEKLA-KATGANVITNI----KDLSAQDLGDAGL---VEER 340
Query: 415 IAKLSGGVAV-IKVGAH-----------TEVELEDRKLRIEDAKNATFAAMDEG-IVPGG 461
K+SG + ++ H TE +E+ ++DA +++G IV GG
Sbjct: 341 --KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGG 398
Query: 462 GATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSD 521
G+T V L + + EQ+ A AL V ++A NAG+D ++ K R +
Sbjct: 399 GSTEVELSMKLREYAEGISGR-EQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAH 457
Query: 522 WR-----FGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
G N TG ED+ GV +P RV A+Q+A
Sbjct: 458 ASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 496
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 135/511 (26%), Positives = 221/511 (43%), Gaps = 86/511 (16%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 31 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 86
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V G
Sbjct: 87 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEV-GAQ 145
Query: 189 DIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSFETSIVVEEGMKIDKGYLSP 248
D + + I+ + L E +++V +EG K+DK
Sbjct: 146 DKEILTKIA---------MTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG-KVDK----- 190
Query: 249 QFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETL 308
I ++KS D+ T+L +L+ E +S+Q+ + +
Sbjct: 191 DLIKIEKKSGASIDD-----------------------TELIKGVLVDKERVSAQMPKKV 227
Query: 309 VMNKIRGLLNVAVVKCPGFGDGKKALLQDIAL---MTGADFLSGELGLT-LAGATSDQLG 364
KI LLN A+ + +L+D+ +GA+ L + G+ LA + G
Sbjct: 228 TDAKI-ALLNCAIEETAS------EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEG 280
Query: 365 IARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATD--NAYLSRKLSERIAKLSGGV 422
I VK + +A T A + I KDL+A D +A L + ER K+SG
Sbjct: 281 IVAARRVKKSDMEKLA-KATGANVITNI----KDLSAQDLGDAGL---VEER--KISGDS 330
Query: 423 AV-IKVGAH-----------TEVELEDRKLRIEDAKNATFAAMDEG-IVPGGGATYVHLL 469
+ ++ H TE +E+ ++DA +++G IV GGG+T V L
Sbjct: 331 MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELS 390
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWR-----F 524
+ + EQ+ A AL V ++A NAG+D ++ K R +
Sbjct: 391 MKLREYAEGISGR-EQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA 449
Query: 525 GYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
G N TG ED+ GV +P RV A+Q+A
Sbjct: 450 GLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 480
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 135/511 (26%), Positives = 221/511 (43%), Gaps = 86/511 (16%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 80
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V G
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEV-GAQ 139
Query: 189 DIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSFETSIVVEEGMKIDKGYLSP 248
D + + I+ + L E +++V +EG K+DK
Sbjct: 140 DKEILTKIA---------MTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG-KVDK----- 184
Query: 249 QFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETL 308
I ++KS D+ T+L +L+ E +S+Q+ + +
Sbjct: 185 DLIKIEKKSGASIDD-----------------------TELIKGVLVDKERVSAQMPKKV 221
Query: 309 VMNKIRGLLNVAVVKCPGFGDGKKALLQDIAL---MTGADFLSGELGLT-LAGATSDQLG 364
KI LLN A+ + +L+D+ +GA+ L + G+ LA + G
Sbjct: 222 TDAKI-ALLNCAIEETAS------EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEG 274
Query: 365 IARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATD--NAYLSRKLSERIAKLSGGV 422
I VK + +A T A + I KDL+A D +A L + ER K+SG
Sbjct: 275 IVAARRVKKSDMEKLA-KATGANVITNI----KDLSAQDLGDAGL---VEER--KISGDS 324
Query: 423 AV-IKVGAH-----------TEVELEDRKLRIEDAKNATFAAMDEG-IVPGGGATYVHLL 469
+ ++ H TE +E+ ++DA +++G IV GGG+T V L
Sbjct: 325 MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELS 384
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWR-----F 524
+ + EQ+ A AL V ++A NAG+D ++ K R +
Sbjct: 385 MKLREYAEGISGR-EQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA 443
Query: 525 GYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
G N TG ED+ GV +P RV A+Q+A
Sbjct: 444 GLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 474
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+ADAV TLGPKG + +L +S + + NDG TI + ++ +E+ A ++ EV+ +
Sbjct: 34 IADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMD----VEHPTAKMIVEVSKAQD 89
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ 179
GDGTTTAV+L+ E++K + G +P + G V E K++ +
Sbjct: 90 TAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE 140
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 460 GGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRT 519
GGGA L + NS+ EQ+ + AKAL + ++A NAG+D + K +
Sbjct: 407 GGGAVEAELAMRLAKYANSV-GGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKA 465
Query: 520 SDWR----FGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSI 558
D + G + D+ + GV DP RV AL++AV +
Sbjct: 466 DDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEV 508
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 40 RKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESD-KLKVIND 98
R + V G KK G E++++ +A + +LGP+G + IL D ++ + ND
Sbjct: 27 RPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITND 86
Query: 99 GVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGAN 158
G TI +EL + I A L+ +++ +D GDGTT V+LA ++ + + G +
Sbjct: 87 GATILSQMELDNEI----AKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIH 142
Query: 159 PVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNL 207
P+ + G + K + L++ DD ISA NDE +
Sbjct: 143 PIKIANGFDEAAKLAISKLEETC------DD------ISASNDELFRDF 179
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 80
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V +D
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 31 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 86
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V +D
Sbjct: 87 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 146
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 80
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V +D
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 454 DEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIV 513
D IV GGG+T V L + + EQ+ A AL V ++A NAG+D +
Sbjct: 369 DGRIVSGGGSTEVELSMKLREYAEGISGR-EQLAVRAFADALEVIPRTLAENAGLDAIEI 427
Query: 514 VEKTRTSDWR-----FGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
+ K R + G N TG ED+ GV +P RV A+Q+A
Sbjct: 428 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 474
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L + + V NDGVTI R + ++E+ A ++ EVA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREM----SVEHPAAKMLIEVAKTQE 80
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTTTAV++A E+++ + +P + KG ++ ++LK + V +D
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 431 TEVELEDRKLRIEDAKNATFAAMDEG-IVPGGGATYVHLLEHIPIIKNSMEDPDEQIGAD 489
TE +E+ ++DA +++G IV GGG+T V L + + EQ+
Sbjct: 345 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGR-EQLAVR 403
Query: 490 IVAKALIVPAISIATNAGVDGTIVVEKTRTSDWR-----FGYNAMTGRYEDLLSAGVADP 544
A AL V ++A NAG+D ++ K R + G N TG ED+ GV +P
Sbjct: 404 AFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEP 463
Query: 545 CRVARCALQNA 555
RV A+Q+A
Sbjct: 464 LRVKTQAIQSA 474
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L +S + V NDG TI I+L ++ A +M EVA +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDL----QHPAAKMMVEVAKTQD 90
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKG 165
AGDGTTTAV++A E+++ + +P + KG
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKG 127
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 390 ARIMQIKKDLAATDNAYLS----RKLS-ERIAKLSG----GVAVIKVGAHTEVELEDRKL 440
A+I+ KDL D Y RKL+ E + + G I + TE +++ +
Sbjct: 330 AKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVER 389
Query: 441 RIEDAKNATFAAMDEG-IVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPA 499
+EDA M++G ++P GGA + L + + E + + A AL +
Sbjct: 390 ALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV-GGKEALAIENFADALKIIP 448
Query: 500 ISIATNAGVDGT----IVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
++A NAG+D V+ + + G + G+ D+L G+ +P RV + A+++A
Sbjct: 449 KTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSA 508
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 75/128 (58%), Gaps = 7/128 (5%)
Query: 56 GKES-REALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIE 113
GK++ +E ++A I ++++V +LGP+G + +L +S + + NDGVTI + ++ +E
Sbjct: 19 GKDAMKENIEAAI-AISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMD----VE 73
Query: 114 NAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKEL 173
+ A +M EV+ + GDGTTTAVI+A +++ ++ +P + +G +E
Sbjct: 74 HPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEA 133
Query: 174 VKVLKQKS 181
+V+ + S
Sbjct: 134 KRVIDEIS 141
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 501 SIATNAGVDGTIVVEKTRTSDWR----FGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
++A NAG+D ++ K R + +G N TG ED++ GV +P RV + A+++A
Sbjct: 448 ALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESA 506
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 70 LADAVSVTLGPKGRNVILSESD-KLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+ADA+ +LGPKG + ++ + + + NDG TI + +++ + A ML++ SK
Sbjct: 23 VADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQV---LHPAARMLVE--LSKAQ 77
Query: 129 DL-AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGR 187
D+ AGDGTT+ VI+A ++ S + G +P + + K +++ +++L S PV
Sbjct: 78 DIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELS 137
Query: 188 D 188
D
Sbjct: 138 D 138
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L +S + V ND TI I+L ++ A +M EVA +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAAKMMVEVAKTQD 90
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKG 165
AGDGTTTAV++A E+++ + +P + KG
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKG 127
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 390 ARIMQIKKDLAATDNAYLS----RKLS-ERIAKLSG----GVAVIKVGAHTEVELEDRKL 440
A+I+ KDL D Y RKL+ E + + G I + TE +++ +
Sbjct: 330 AKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVER 389
Query: 441 RIEDAKNATFAAMDEG-IVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPA 499
+EDA M++G ++P GGA + L + + E + + A AL +
Sbjct: 390 ALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV-GGKEALAIENFADALKIIP 448
Query: 500 ISIATNAGVDGT----IVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
++A NAG+D V+ + + G + G+ D+L G+ +P RV + A+++A
Sbjct: 449 KTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSA 508
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 70 LADAVSVTLGPKGR-NVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
L D + LGPKG +++S + +K+ DG + ++ I++ A L+ +VA+ +
Sbjct: 22 LQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQ----IQHPTASLIAKVATAQD 77
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ 179
D+ GDGTT+ V++ E++K L +S G +P + +G ++ ++ L+Q
Sbjct: 78 DITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQ 128
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 430 HTEVELEDRKLRIEDAKNATFAAMDEG-IVPGGGATYVHLLEHIPIIKNSMEDPDEQIGA 488
HT +++D I D A A+D+G +VPG GA V + E + K S++ Q+G
Sbjct: 374 HTLTQIKDA---IRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGR-AQLGV 429
Query: 489 DIVAKALIVPAISIATNAGVD 509
A AL++ +A N+G D
Sbjct: 430 QAFADALLIIPKVLAQNSGFD 450
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V TLGPKG + +L +S + V ND TI I+L ++ A +M EVA +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAAKMMVEVAKTQD 90
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKG 165
AGDGTTTAV++A E+++ + +P + KG
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKG 127
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 390 ARIMQIKKDLAATDNAYLS----RKLS-ERIAKLSG----GVAVIKVGAHTEVELEDRKL 440
A+I+ KDL D Y RKL+ E + + G I + TE +++ +
Sbjct: 330 AKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVER 389
Query: 441 RIEDAKNATFAAMDEG-IVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPA 499
+EDA M++G ++P GGA + L + + E + + A AL +
Sbjct: 390 ALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV-GGKEALAIENFADALKIIP 448
Query: 500 ISIATNAGVDGT----IVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
++A NAG+D V+ + + G + G+ D+L G+ +P RV + A+++A
Sbjct: 449 KTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSA 508
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 70 LADAVSVTLGPKGR-NVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+AD + LGPK ++L L + NDG I R I+++ + A M E++ +
Sbjct: 31 VADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVA----HPAAKSMLELSRTQD 86
Query: 129 DLAGDGTTTAVILAREMI-KSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGR 187
+ GDGTTT +ILA E++ + + +PV + + + K + + ++V+KQ S PV
Sbjct: 87 EEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVE 146
Query: 188 DD 189
+D
Sbjct: 147 ND 148
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 57 KESREALQAG----IDKLADAVSVTLGPKGR-NVILSESDKLKVINDGVTIARAIELSDT 111
+ES +Q+G +AD + LGPK ++L + + NDG I R I+
Sbjct: 4 RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQ---- 59
Query: 112 IENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVK 171
+++ A M E++ ++ GDGTT+ +ILA EM+ + +P + K +
Sbjct: 60 VQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALD 119
Query: 172 ELVKVLKQKSFPV--TGRD 188
+++ LK+ S PV + RD
Sbjct: 120 DMISTLKKISIPVDTSNRD 138
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 453 MDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVD--- 509
+D +VPGGGA+ + + H K+ EQ VA+AL V ++ N G
Sbjct: 391 LDPQLVPGGGASEM-AVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIR 449
Query: 510 --GTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAV 556
++ + T+ + +G N TG D+ G+ +P V + AV
Sbjct: 450 LLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAV 498
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V +LGP G + +L + + + NDG TI + +E +E+ A ++ E+A +
Sbjct: 22 IANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLE----VEHPAAKVLCELADLQD 77
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--- 185
GDGTT+ VI+A E++K+ V +P ++ G KE V+ + + T
Sbjct: 78 KEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDEL 137
Query: 186 GRDDIKAVASISAG------NDEFIGNL 207
GRD + A S N +F NL
Sbjct: 138 GRDCLINAAKTSMSSKVIGINGDFFANL 165
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 455 EGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVV 514
+ +VPGGGA L ++ SM EQ+ A++L+V ++A NA D T +V
Sbjct: 400 KSVVPGGGAVEAALSIYLENYATSM-GSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLV 458
Query: 515 EKTRTSD-------------WRFGYNAMTGRYEDLLSAGVADP 544
K R W G + + G+ D AGV +P
Sbjct: 459 AKLRAFHNEAQVNPERKNLKW-IGLDLVNGKPRDNKQAGVFEP 500
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 13/162 (8%)
Query: 55 FGKESREALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIE 113
+GKE+ A A + + +A+ T GP+G + +L +S + + NDG TI ++L +
Sbjct: 27 YGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDL----Q 82
Query: 114 NAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKEL 173
+ A L+ ++A ++ DGT TAVI + E++K + +P + G K +
Sbjct: 83 HPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVA 142
Query: 174 VKVLKQ--KSFPVTGRDDIKAVASIS------AGNDEFIGNL 207
++ +++ ++ + D ++ +A S AG E+I ++
Sbjct: 143 LQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADI 184
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 70 LADAVSVTLGPKGRNVILSESDK---LKVINDGVTIARAIELSDTIENAGAMLMQEVASK 126
+ D V TLGPKG + IL S + L V NDG TI + I ++N A ++ +++
Sbjct: 22 IGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNI----GVDNPAAKVLVDMSRV 77
Query: 127 MNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTG 186
+D GDGTT+ +LA E+++ ++ +P + G + K + L + G
Sbjct: 78 QDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVD-HG 136
Query: 187 RDDIK 191
D++K
Sbjct: 137 SDEVK 141
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 70 LADAVSVTLGPKGRN-VILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+AV TLGP+G + +I+ K + NDG TI ++L D + A L+ ++A +
Sbjct: 23 IAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI---LKLLDVVHPAAKTLV-DIAKSQD 78
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD 188
GDGTT+ +LA E +K V G +P + + + V +K+ + V D
Sbjct: 79 AEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKED 138
Query: 189 DIK 191
++
Sbjct: 139 KVE 141
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 451 AAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQ---IGADIVAKALIVPAISIATNAG 507
A ++ +V GGGA + L +++ ++ P +Q IGA AKAL + + NAG
Sbjct: 390 AIKNDSVVAGGGAIEMELSKYLRDYSRTI--PGKQQLLIGA--YAKALEIIPRQLCDNAG 445
Query: 508 VDGTIVVEKTRTSD-----WRFGYNAMTGRYEDLLSAGVADPCRVARCALQNA 555
D T ++ K R W +G + T D A V +P V AL A
Sbjct: 446 FDATNILNKLRARHAQGGMW-YGVDINTEDIADNFEAFVWEPAMVRINALTAA 497
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 14/115 (12%)
Query: 57 KESREALQAGIDKLADAVSVTLGPKGRNVILSESD-KLKVINDGVTIARAIELSDTIENA 115
+E R+A +ADA+ +LGPKG + ++ S ++ + NDG TI + + + +
Sbjct: 18 QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPV--- 74
Query: 116 GAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTV 170
A ++ EV++ + AGDGTT+ VIL +G L GA L KG+H T+
Sbjct: 75 -ARMLVEVSAAQDSEAGDGTTSVVIL------TGAL---LGAAERLLNKGIHPTI 119
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 70 LADAVSVTLGPKGRNVIL--SESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127
+ D V TLGPKG + +L + S+ V NDG TI ++I L +N A ++ ++
Sbjct: 29 VGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPL----DNPAAKVLVNISKVQ 84
Query: 128 NDLAGDGTTTAVILAREMIK 147
+D GDGTT+ +L+ E+++
Sbjct: 85 DDEVGDGTTSVTVLSAELLR 104
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESD-KLKVINDGVTIARAIELS 109
K L G E+ ++ +A+ + +LGP G + ++ + D + V NDG TI +++
Sbjct: 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVD 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
I A LM E++ +D GDGTT V+LA +++ + G +P+ + G +
Sbjct: 63 HQI----AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQA 118
Query: 170 VK 171
+
Sbjct: 119 AR 120
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 70 LADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
+A+ V +LGP G + +L + V NDG TI + L D AG +L+ E+A + +
Sbjct: 36 VANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATI---LSLLDVQHPAGKILV-ELAQQQD 91
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ 179
GDGTT+ VI+A E++K V +P + G ++E ++ + +
Sbjct: 92 REIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINE 142
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 423 AVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEG-IVPGGGATYVHLLEHIPIIKNSMED 481
++I GA+ + L++ + + D+ + ++ G +VPGGG L ++ ++
Sbjct: 384 SIILRGAN-DYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGS 442
Query: 482 PDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRT----------------SDWRFG 525
++ A+ A LI+P ++A NA D + +V K R+ S +G
Sbjct: 443 REQLAIAEFAAALLIIPK-TLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYG 501
Query: 526 YNAMTGRYEDLLSAGVADP----CRVARCALQNAVSI 558
+ + G+ D + AGV +P + + AL+ V+I
Sbjct: 502 LDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAI 538
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 72 DAVSVTLGPKGRNV-ILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130
+A+ TLGP G ++ I++ + K + NDG TI ++L D + A L+ +++ +
Sbjct: 38 EALKPTLGPLGSDILIVTSNQKTTISNDGATI---LKLLDVVHPAAKTLV-DISRAQDAE 93
Query: 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT 185
GDGTT+ ILA E++K + G + + KG K V V+ + + + +T
Sbjct: 94 VGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDIT 148
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 70 LADAVSVTLGPKGR-NVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128
L + LGPKG +++ + +K+ DG + ++ I++ A+L+ A+ +
Sbjct: 29 LQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQ----IQSPTAVLIARAAAAQD 84
Query: 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ 179
++ GDGTTT V L E+++ + G +P + G KE +K L +
Sbjct: 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDE 135
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 454 DEGIVPGGGATYVHLLEHIPIIK-NSM-EDPDEQIGADIVAKALIVPAISIATNAGVDGT 511
D+ I+PG GA Y+ L ++ N + + G + A+AL+V ++ N+G D
Sbjct: 408 DKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPL 467
Query: 512 IVV--------EKTRTSDWRF-GYNAMTGRYEDLLSAGVADPCRVARCALQNAVSI 558
V+ + + + R+ G + G D G+ D RV R A+ A I
Sbjct: 468 DVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGI 523
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 65 AGIDKLADAVSVTLGPKGRN-VILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEV 123
A I +L ++GP GRN +I++ K+ + ND T+ R + D + A +L+
Sbjct: 33 AAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLREL---DIVHPAVKVLVMAT 89
Query: 124 ASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHK----TVKEL 173
+ D+ GDGT +ILA E++ +S G + V + +G + T+KEL
Sbjct: 90 EQQKIDM-GDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKEL 142
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 95 VINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVS 154
+ NDG TI + ++ I++ A ++ EV+ + GDGTTTA +L+ E++ +
Sbjct: 11 ITNDGATILKEMD----IQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIM 66
Query: 155 FGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDD 189
G + + +G ++ ++L+ + ++ D+
Sbjct: 67 KGVHSTIISEGYRHAAEKCREILETITIAISPDDE 101
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 442 IEDAKNATFAAMDEG-IVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAI 500
+ DA + +++G +V GGG++ V L + ++++ EQ+ A+AL V +
Sbjct: 342 LNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGR-EQLAVSKFAEALEVIPV 400
Query: 501 SIATNAGVDGTIVVEKTRTSDWR----FGYNAMTGRYEDLLSAGVADPCRVARCALQNAV 556
++A NAG+D ++ + R+ + G N TG D+ V +P R+ A+ A+
Sbjct: 401 ALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAM 460
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)
Query: 397 KDLAATDNAYLSRKLSERIA-----KLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFA 451
+++ D+ YLS ++ K G ++ I + T+ ++D + ++D N TF
Sbjct: 326 EEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVN-TFK 384
Query: 452 AM--DEGIVPGGGATYVHLLEHIPIIKNSMEDPD-EQIGADIVAKALIVPAISIATNAGV 508
+ D+ +VPGGGAT + L + I + P EQ A+A ++A N+GV
Sbjct: 385 VLTRDKRLVPGGGATEIELAKQITSYGETC--PGLEQYAIKKFAEAFEAIPRALAENSGV 442
Query: 509 DGTIVVEKTRTSDWRFGYN------AMTGRYEDLLSAGVAD 543
V+ K N A +D+L AGV D
Sbjct: 443 KANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 483
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 69 KLADAVSVTLGPKGRN-VILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127
+LA GP G N ++++ +KL V ND TI R +E+ A M++ +AS M
Sbjct: 22 ELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHP---AAKMIV--MASHM 76
Query: 128 NDL-AGDGTTTAVIL 141
+ GDGT ++
Sbjct: 77 QEQEVGDGTNFVLVF 91
>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 422
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 288 QLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGK-KALL-----QDIALM 341
+L+ + +I +I S + E V + +R LN+ FG+ + K LL + L+
Sbjct: 54 RLNFHIALIGLEIWSNINEINVQSDVRATLNL-------FGEWREKKLLPRKRNDNAQLL 106
Query: 342 TGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAA 401
TG DF +GL G+ + A V S+ T +VA T A + + D
Sbjct: 107 TGIDFNGTPVGLAYIGSICNPKTSAAVVQDYSSRTRMVA--ITMAHEMGHNLGMNHDRGF 164
Query: 402 TDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDR 438
+ +S R K + + V H L DR
Sbjct: 165 CTCGFNKCVMSTRRTKPAYQFSSCSVREHQRYLLRDR 201
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 60 REALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVT-------IARAIELSDTI 112
RE L+ G+D L + K NV+LSE ++K+ + GV I R +
Sbjct: 111 REILK-GLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPF 169
Query: 113 ENAGAMLMQEVASKMNDLAGDGTTTAVILAR------EMIKSGMLSVSFGANPVALKKGM 166
A ++ Q D+ G TA+ LAR E+ +L + NP L+
Sbjct: 170 WMAPEVIKQSAYDSKADIWSLG-ITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNY 228
Query: 167 HKTVKELVKVL--KQKSFPVTGRDDIK 191
K +KE V+ K+ SF T ++ +K
Sbjct: 229 SKPLKEFVEACLNKEPSFRPTAKELLK 255
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 60 REALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVT-------IARAIELSDTI 112
RE L+ G+D L + K NV+LSE ++K+ + GV I R +
Sbjct: 111 REILK-GLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPF 169
Query: 113 ENAGAMLMQEVASKMNDLAGDGTTTAVILAR------EMIKSGMLSVSFGANPVALKKGM 166
A ++ Q D+ G TA+ LAR E+ +L + NP L+
Sbjct: 170 WMAPEVIKQSAYDSKADIWSLG-ITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNY 228
Query: 167 HKTVKELVKVL--KQKSFPVTGRDDIK 191
K +KE V+ K+ SF T ++ +K
Sbjct: 229 SKPLKEFVEACLNKEPSFRPTAKELLK 255
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 60 REALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVT-------IARAIELSDTI 112
RE L+ G+D L + K NV+LSE ++K+ + GV I R +
Sbjct: 126 REILK-GLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPF 184
Query: 113 ENAGAMLMQEVASKMNDLAGDGTTTAVILAR------EMIKSGMLSVSFGANPVALKKGM 166
A ++ Q D+ G TA+ LAR E+ +L + NP L+
Sbjct: 185 WMAPEVIKQSAYDSKADIWSLG-ITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNY 243
Query: 167 HKTVKELVKVL--KQKSFPVTGRDDIK 191
K +KE V+ K+ SF T ++ +K
Sbjct: 244 SKPLKEFVEACLNKEPSFRPTAKELLK 270
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 85 VILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAG---DGTTTAVIL 141
VI+SES + + N ++ IE +DT + A LM+ + D G D T I
Sbjct: 50 VIVSESKIIDLTNQEQDLSERIETNDTAKGAVFKLMKSDFYEREDFMGEVEDMITLKDIF 109
Query: 142 AREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKS--FPVTGR 187
E +K +L SF L + H+ V E + ++ QK P+ R
Sbjct: 110 GTETLKRSIL-FSFQYELDFLLRQFHQNV-ENITIVGQKGTIMPIEAR 155
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 60 REALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVT-------IARAIELSDTI 112
RE L+ G+D L + K NV+LSE ++K+ + GV I R +
Sbjct: 131 REILK-GLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPF 189
Query: 113 ENAGAMLMQEVASKMNDLAGDGTTTAVILAR------EMIKSGMLSVSFGANPVALKKGM 166
A ++ Q D+ G TA+ LAR E+ +L + NP L+
Sbjct: 190 WMAPEVIKQSAYDSKADIWSLG-ITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNY 248
Query: 167 HKTVKELVKVL--KQKSFPVTGRDDIK 191
K +KE V+ K+ SF T ++ +K
Sbjct: 249 SKPLKEFVEACLNKEPSFRPTAKELLK 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,423,029
Number of Sequences: 62578
Number of extensions: 545994
Number of successful extensions: 1909
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1751
Number of HSP's gapped (non-prelim): 101
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)