BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007835
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII FM QGGDF+ NGTGG+SIYG KF DENF L H GPG+LSMANSG NTNGSQF
Sbjct: 61 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
F+T + LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII FM QGGDF+ NGTGG+SIYG KF DENF L H GPG+LSMANSG NTNGSQF
Sbjct: 53 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
F+T + LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 113 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 164
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 75/112 (66%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII FMIQGGDF++GNGTGGESIYG KF DENFK H GPG+LSMAN+G NTNGSQF
Sbjct: 60 FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
F+ + LD L++VK +E G+ GKP + I DCG+
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 75/110 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FM+QGGDF+ GNGTGG+SIYG KF DENF+L HN PG+LSMAN+G NTNGSQF
Sbjct: 51 FHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQF 110
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 111
FIT LD +N+VK IE G+G GKP ++I CG
Sbjct: 111 FITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 77/111 (69%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 72 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 112
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 182
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 52 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 111
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 112 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 52 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 111
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 112 FICTAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 78/112 (69%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 61 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 78/112 (69%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 78/112 (69%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 57 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 116
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 117 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGIL+MAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 77/112 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FH+II GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 75/112 (66%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII F QGGDF+ NGTGG+SIYG KF DENF L H GPG+LS ANSG NTNGSQF
Sbjct: 62 FHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQF 121
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
F+T + LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 122 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 173
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 76/112 (67%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGG+F+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 76/111 (68%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+I FM+QGGDF++ NGTGG+SIYG KF DENF++ H PG+LSMAN+GANTNGSQ
Sbjct: 51 IFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQ 110
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 111
FFIT LD L+IV+K+E G+ GK +KI DCG
Sbjct: 111 FFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 161
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 76/111 (68%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+I FM+QGGDF++ NGTGG+SIYG KF DENF++ H PG+LSMAN+GANTNGSQ
Sbjct: 52 IFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQ 111
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 111
FFIT LD L+IV+K+E G+ GK +KI DCG
Sbjct: 112 FFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 162
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 76/112 (67%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGG+F+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 76/111 (68%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM QGGDF+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQF
Sbjct: 52 FHRIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 111
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 112
FI + LD +NIV+ +++ G+ +GK ++ + I DCG+
Sbjct: 112 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQ 162
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 74/112 (66%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FM QGGDF KG+GTGG+SIYG KF DENF+L H G G+LSMANSG NTNGSQF
Sbjct: 60 FHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQF 119
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FI + LD N+VKK+E VG+ GK +PV I CGE
Sbjct: 120 FICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 72/114 (63%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRIIK FMIQGGDFS NGTGGESIYG KF DENF H+ G+LSMAN+G+NTNGSQF
Sbjct: 73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 132
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFSE 115
FIT HLD + + K +E V KPA+ I +CGE E
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKE 186
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 74/113 (65%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQF
Sbjct: 54 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 113
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 114
FI + LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 114 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 74/113 (65%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQF
Sbjct: 53 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 114
FI + LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 74/113 (65%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQF
Sbjct: 53 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 114
FI + LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 74/113 (65%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQF
Sbjct: 52 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 111
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 114
FI + LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 112 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+IK FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQF
Sbjct: 65 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 124
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEFSESK 117
FIT + LD + +V+K+E T KP + V I DCG+ K
Sbjct: 125 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 181
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+IK FMIQGGDF G+GTG SIY G F DENFKL H+ PG+LSMANSG +TNG QF
Sbjct: 65 FHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQF 124
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 112
FIT + LD L +++KIE V TG + KP PV I CGE
Sbjct: 125 FITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 119 bits (298), Expect = 5e-27, Method: Composition-based stats.
Identities = 62/117 (52%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+IK FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQF
Sbjct: 62 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 121
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFSESK 117
FIT + LD + +V+K+E T G KP + V I DCG+ K
Sbjct: 122 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 119 bits (298), Expect = 5e-27, Method: Composition-based stats.
Identities = 62/117 (52%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+IK FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQF
Sbjct: 62 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 121
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFSESK 117
FIT + LD + +V+K+E T G KP + V I DCG+ K
Sbjct: 122 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 73/112 (65%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
FHRII GF QGGDF++ NGTGG+SIYG KF DENF L H GPGILS AN+G NTNGSQ
Sbjct: 51 CFHRIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQ 110
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 112
FFI + LD NIV+ E+ G+ +GK ++ + I DCG+
Sbjct: 111 FFICTAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQ 162
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 71/107 (66%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
FHRII FMIQGGDF++G+GTGGESIYG KF DENF H+ P +LSMAN+G NTNGSQ
Sbjct: 75 FFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQ 134
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKI 107
FFIT LD + +VK IE+ G+ +GKP + V I
Sbjct: 135 FFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCI 181
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 117 bits (293), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+IK FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQF
Sbjct: 55 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 114
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEFSESK 117
FIT + LD + +V+K+E T KP + V I DCG+ K
Sbjct: 115 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 171
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 72/113 (63%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHRII FM QGGD + GNG+GGESIYG FTDENF + H+ PG+LSMAN+G NTN SQ
Sbjct: 58 IFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQ 117
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FFIT LD +N+V+++E+ G G + V I DCGE
Sbjct: 118 FFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLD---HNGPGILSMANSGANTN 57
+FHR+I FMIQGGDF++GNGTGGESIYG F DE+F H G G LSMAN+G NTN
Sbjct: 63 VFHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTN 122
Query: 58 GSQFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFSESK 117
GSQFFI LD L++VKK+E++G+ GK + + DCGE + K
Sbjct: 123 GSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAADK 182
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR++K FMIQGGDFS+GNG GGESIYGG F DENF L H+ +LSMAN G +TNGSQF
Sbjct: 77 FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFS 114
FIT + HLD ++++IE + T +P V++IDCG +
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII GFM+QGGD++ NGTGG SIYG KF DENF+L H GILSMAN GA+TNGSQF
Sbjct: 77 FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQF 136
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVG--TGDGKPAQPVKIIDCG 111
FIT + LD +++V KI + G +G K ++I DCG
Sbjct: 137 FITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 72/113 (63%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHRII FM QGGD + GNG+GGESIYG FTDENF + H+ PG+LSMAN+G NTN SQ
Sbjct: 58 IFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQ 117
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
F IT LD +N+V+++E+ G G + V I DCGE+
Sbjct: 118 FLITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEW 170
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FMIQGGDF++G+GTGG SIYG KF DENFKL H G G LSMAN+GA+TNGSQF
Sbjct: 56 FHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQF 115
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDG-KPAQPVKIIDCGEFS 114
FIT + LD +++V+KIEQ G +P Q V I G +
Sbjct: 116 FITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+IK FMIQGGDF+KG+GTGGESIYGG F DE F + H+ P ++SMAN G NTNGSQF
Sbjct: 64 FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 123
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 113
FIT HL+ +V KIE + T +P V I++CGE
Sbjct: 124 FITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 72/112 (64%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+I FM+QGGDF+ GNGTGG+SIYGGKF DENFK H+ PG+LSMAN+G NTNGSQF
Sbjct: 51 FHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQF 110
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113
FIT LD +IVKK+E +G+ G + + GE
Sbjct: 111 FITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 72/112 (64%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+I F+ QGGD +K +GTGG+SIYG KF DENF + H GPG+LSMAN G NTN SQ
Sbjct: 55 IFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQ 114
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 112
F IT ++ HLD ++ VKKIE G+ G + + I +CG+
Sbjct: 115 FVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQ 166
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR++K FM+QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQ
Sbjct: 83 LFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQ 142
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 113
FFIT + HLD +V++IE T KP V+I+ CGE
Sbjct: 143 FFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 74/117 (63%), Gaps = 6/117 (5%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHRII FMIQGGDF++GNGTGG SIYG KF DENF H+ GILSMAN+G NTNGSQF
Sbjct: 57 FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116
Query: 62 FITFRRQHHLDXXXXX--XXXXXXXLNIVKKIEQVGTGDGKP---AQPVKIIDCGEF 113
FIT LD ++VK+IE +G+ G +P KI++CGE
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRP-KIVNCGEL 172
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR++K FM+QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQ
Sbjct: 66 LFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQ 125
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 113
FFIT + HLD +V++IE T KP V+I+ CGE
Sbjct: 126 FFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR++K FM+QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQ
Sbjct: 66 LFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQ 125
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 113
FFIT + HLD +V++IE T KP V+I+ CGE
Sbjct: 126 FFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+IK FMIQGGDF NG+G SIYG KF DENF + H+ G+LSMANSG NTNG Q
Sbjct: 113 IFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQ 172
Query: 61 FFITFRRQHHLDXXXXXX--XXXXXXLNIVKKIEQVGTG--DGKPAQPVKIIDCGEF 113
FFIT ++ LD L ++KKIE V KP P+ +++CGE
Sbjct: 173 FFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+I+ FMIQGGDF+ +GTGG+SIYG +F DEN K+ H G +SMAN+G N+NGSQ
Sbjct: 54 IFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQ 112
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTG-DGKPAQPVKIIDCG 111
FF+T LD +++VKK+E TG + KP + VKI DCG
Sbjct: 113 FFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+IK FMIQGGDF+ +GTGG SIYG F DENFKL H G G +SMAN+G +TNGSQ
Sbjct: 56 IFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQ 115
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIE-QVGTGDGKPAQPVKIIDCGE 112
FFIT + LD + +V IE Q G +P I++ G+
Sbjct: 116 FFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGK 168
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+I+ FMIQGGDF+ +GTGG+SIYG KF DEN + H G LSMAN+G NTNGSQ
Sbjct: 60 IFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQ 118
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 113
FFIT LD +++V +IE+ T +P +PVKI+ GE
Sbjct: 119 FFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 61
FHR+IK FMIQGGD + G+GTGG SIYG F DENFKL H G G +SMAN+G +TNGSQF
Sbjct: 65 FHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQF 124
Query: 62 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIE-QVGTGDGKPAQPVKIIDCGE 112
FIT + LD + +V IE Q G +P II+ G+
Sbjct: 125 FITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGK 176
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+I+ FMIQGGDF+ +GTGG+SIYG KF DEN + H G LSMAN+G NTNGSQ
Sbjct: 60 IFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQ 118
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 113
FFIT LD +++V +IE+ T +P +PVKI+ GE
Sbjct: 119 FFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQ 60
FHRIIKGFMIQ GD G G GGESI+GG+F DE + L H+ P LSMAN+G+NTNGSQ
Sbjct: 63 FHRIIKGFMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQ 121
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTG--DGKPAQPVKIID 109
FFIT LD + +V++I V KP + V II+
Sbjct: 122 FFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGS 59
+FHR+IK FM+Q GD S G+GTGGESI+G +F DE F L+H+ P ++SMAN G NTNGS
Sbjct: 46 IFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGS 104
Query: 60 QFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIID 109
QFFIT LD IV IE+V T KP + +KI++
Sbjct: 105 QFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGS 59
+FHR+I F+IQGGD G G GG+SIYG F DE N +L H G GILSM+N+G NTN S
Sbjct: 79 IFHRVIPNFVIQGGD-PTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSS 137
Query: 60 QFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQV-GTGDGKPAQPVKII 108
QFFIT HLD + ++ I V T KP +KI+
Sbjct: 138 QFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKIL 187
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFK-LDHNGPGILSMANSGANTNGS 59
+FHR IKGFM+Q GD G G GG SI+G KF DE + L HN G++SMAN+G NTNGS
Sbjct: 41 IFHRNIKGFMVQTGD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGS 99
Query: 60 QFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDG--KPAQPVKIID 109
QFFIT+ +Q HLD L + ++E++ + +P V I D
Sbjct: 100 QFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFK-LDHNGPGILSMANSGANTNGS 59
+FHR IKGFM+Q GD G G GG SI+G KF DE + L HN G++SMAN+G NTNGS
Sbjct: 47 IFHRNIKGFMVQTGD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGS 105
Query: 60 QFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQV 94
QFFIT+ +Q HLD L + ++E++
Sbjct: 106 QFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 140
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQ 60
FHRIIK FMIQGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQ
Sbjct: 53 FHRIIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 108
FF+T LD + +V ++ V T +P VKII
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 82.4 bits (202), Expect = 6e-16, Method: Composition-based stats.
Identities = 51/109 (46%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQ 60
FHRIIK FMIQGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQ
Sbjct: 53 FHRIIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 108
FF+T LD + +V ++ V T +P VKII
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 82.4 bits (202), Expect = 6e-16, Method: Composition-based stats.
Identities = 51/109 (46%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQ 60
FHRIIK FMIQGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQ
Sbjct: 53 FHRIIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 61 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 108
FF+T LD + +V ++ V T +P VKII
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGS 59
+FHR++ GF++QGGD G G+GGESIYG F DE + +L N G+++MAN+G++ NGS
Sbjct: 65 IFHRVVPGFIVQGGD-PTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGS 123
Query: 60 QFFITFRRQHHLDXXXXXXXXXX--XXLNIVKKIEQVGTGDGKPAQPVKIIDC 110
QFF T R L+ N+++ E D +P P KI C
Sbjct: 124 QFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 6/77 (7%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGA----N 55
+FH+ IKGF+IQGGD G G GGESIYG F DE + +L ++ GILSMA+ GA N
Sbjct: 57 IFHKNIKGFIIQGGD-PTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPN 115
Query: 56 TNGSQFFITFRRQHHLD 72
TNGSQFFIT+ L+
Sbjct: 116 TNGSQFFITYSSLPQLN 132
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFK--LDHNGPGILSMANSGANTNG 58
+FHR I+ F+IQGGD G GTGGES +G F DE F+ L H G GILSMANSG N+N
Sbjct: 60 IFHRSIRNFVIQGGD-PTGTGTGGESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNR 117
Query: 59 SQFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTG--DGKPAQPVKI 107
SQFFITFR +LD +++ +E V + +P + ++I
Sbjct: 118 SQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 60
+FHR+I+GFMIQGGD + G + +F E L + P +L+MAN+G TNGSQ
Sbjct: 79 VFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQ 135
Query: 61 FFITFRRQHHLDX--XXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKI 107
FFIT + HL+ +V+ I + T G+ +P PV I
Sbjct: 136 FFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIY-----------GGKFTDE-NFKLDHNGPGILS 48
+FHR I+ FMIQGG + + + G F DE + +L H G G+LS
Sbjct: 47 IFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLS 106
Query: 49 MANSGANTNGSQFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT 96
MAN G ++N S+FFITF+ HL+ L+++++ E++ T
Sbjct: 107 MANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 18/89 (20%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGG-ESIYGGKFTDENF--KLDHNGPGILSMANSG---- 53
+FHR++K F++QGGD G G GG ++ + GK D +L G++ +AN G
Sbjct: 62 IFHRVVKDFIVQGGD-PTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSK 120
Query: 54 ----------ANTNGSQFFITFRRQHHLD 72
TNG+QFFIT R L+
Sbjct: 121 DAENDERGRSLGTNGNQFFITLARADVLN 149
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 14/69 (20%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNG-----PGILSMANSGA- 54
+FHR+I GFMIQGG F G K T E K + N G L+MA + A
Sbjct: 40 IFHRVINGFMIQGGGFEPG--------MKQKATKEPIKNEANNGLKNTRGTLAMARTQAP 91
Query: 55 NTNGSQFFI 63
++ +QFFI
Sbjct: 92 HSATAQFFI 100
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 14/69 (20%)
Query: 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNG-----PGILSMANSGA- 54
+FHR+I GFMIQGG F G K T E K + N G L+MA + A
Sbjct: 40 IFHRVINGFMIQGGGFEPG--------MKQKATKEPIKNEANNGLKNTRGTLAMARTQAP 91
Query: 55 NTNGSQFFI 63
++ +QFFI
Sbjct: 92 HSATAQFFI 100
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQ 60
FHR+I GFMIQGG F++ + D + N G ++MA + ++ SQ
Sbjct: 46 FHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKDSATSQ 102
Query: 61 FFITFRRQHHL-----DXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQ-----PVKIIDC 110
FFI L D +++ KI QV T D P Q PV I+
Sbjct: 103 FFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 162
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 2 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQ 60
FHR+I GFMIQGG F++ + D + N G ++MA + ++ SQ
Sbjct: 46 FHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKDSATSQ 102
Query: 61 FFITFRRQHHL-----DXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQ-----PVKIIDC 110
FFI L D +++ KI QV T D P Q PV I+
Sbjct: 103 FFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 162
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 1 MFHRIIKGFMIQGGDFSKG 19
+FHR+I GFMIQGG F G
Sbjct: 44 IFHRVINGFMIQGGGFEPG 62
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 1 MFHRIIKGFMIQGGDFSKG 19
+FHR+I GFMIQGG F G
Sbjct: 40 IFHRVIDGFMIQGGGFEPG 58
>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
Length = 97
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 375 SPARRVSEPSASNHSRGLSRSPSPDGTP 402
SP R V + S S+HS G+SRS +P P
Sbjct: 6 SPVRSVRKNSLSDHSLGISRSKTPVDDP 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,681,924
Number of Sequences: 62578
Number of extensions: 354041
Number of successful extensions: 568
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 75
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)