Query 007835
Match_columns 588
No_of_seqs 209 out of 1201
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 15:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 3.1E-39 6.7E-44 334.7 9.4 116 1-116 65-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 7.9E-37 1.7E-41 294.5 10.6 116 1-116 89-205 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 3.9E-34 8.6E-39 261.9 6.5 113 1-113 64-177 (177)
4 KOG0881 Cyclophilin type pepti 100.0 1.2E-33 2.5E-38 256.2 5.4 111 1-112 50-162 (164)
5 KOG0111 Cyclophilin-type pepti 100.0 2.6E-32 5.6E-37 267.0 7.7 113 1-113 185-297 (298)
6 KOG0882 Cyclophilin-related pe 100.0 4E-31 8.7E-36 279.1 8.5 111 1-112 445-557 (558)
7 PLN03149 peptidyl-prolyl isome 100.0 2.6E-30 5.6E-35 251.4 12.8 113 1-113 72-186 (186)
8 cd01926 cyclophilin_ABH_like c 100.0 4.2E-30 9.2E-35 244.6 13.0 111 1-111 54-164 (164)
9 KOG0883 Cyclophilin type, U bo 100.0 6.6E-31 1.4E-35 273.0 8.0 117 1-118 318-436 (518)
10 cd01923 cyclophilin_RING cyclo 100.0 9.7E-30 2.1E-34 241.3 13.2 116 1-117 40-157 (159)
11 PTZ00060 cyclophilin; Provisio 100.0 8.4E-30 1.8E-34 247.1 12.7 113 1-113 70-182 (183)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 9.9E-30 2.2E-34 241.2 11.8 109 1-112 40-156 (158)
13 PTZ00221 cyclophilin; Provisio 100.0 2.1E-29 4.6E-34 254.4 13.3 115 1-119 109-225 (249)
14 cd01927 cyclophilin_WD40 cyclo 100.0 4.1E-29 9E-34 234.4 12.9 109 1-110 38-148 (148)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 5.6E-29 1.2E-33 233.2 13.1 108 1-109 38-146 (146)
16 cd01921 cyclophilin_RRM cyclop 100.0 6.7E-29 1.5E-33 236.9 13.2 116 1-117 38-163 (166)
17 cd01928 Cyclophilin_PPIL3_like 100.0 6.6E-29 1.4E-33 234.4 12.6 110 1-111 41-152 (153)
18 KOG0884 Similar to cyclophilin 100.0 8.8E-29 1.9E-33 223.5 7.0 116 1-117 41-159 (161)
19 cd01925 cyclophilin_CeCYP16-li 99.9 2.3E-27 5.1E-32 227.6 12.5 116 1-117 46-164 (171)
20 KOG0885 Peptidyl-prolyl cis-tr 99.9 2.7E-27 5.8E-32 245.6 7.5 116 1-117 53-171 (439)
21 KOG0865 Cyclophilin type pepti 99.9 6.5E-27 1.4E-31 223.7 6.7 113 1-113 52-167 (167)
22 PRK10903 peptidyl-prolyl cis-t 99.9 1E-25 2.2E-30 219.9 12.5 110 1-113 69-189 (190)
23 PRK10791 peptidyl-prolyl cis-t 99.9 1.5E-25 3.3E-30 214.0 12.4 109 1-112 40-162 (164)
24 cd01920 cyclophilin_EcCYP_like 99.9 2.9E-25 6.3E-30 209.9 12.2 106 1-109 38-154 (155)
25 KOG0415 Predicted peptidyl pro 99.9 2.3E-25 5E-30 229.8 9.1 116 1-117 41-166 (479)
26 cd00317 cyclophilin cyclophili 99.9 7.1E-24 1.5E-28 196.3 13.1 107 1-109 38-146 (146)
27 cd01924 cyclophilin_TLP40_like 99.9 5.4E-24 1.2E-28 205.5 10.8 92 1-93 38-164 (176)
28 PF00160 Pro_isomerase: Cyclop 99.9 3.5E-23 7.6E-28 193.3 11.5 111 1-112 41-155 (155)
29 KOG0882 Cyclophilin-related pe 96.2 0.0059 1.3E-07 67.0 5.2 113 2-115 144-264 (558)
30 KOG2985 Uncharacterized conser 95.1 0.022 4.7E-07 58.5 4.1 10 191-200 234-243 (306)
31 KOG3116 Predicted C3H1-type Zn 94.7 0.076 1.6E-06 50.8 6.3 10 242-251 144-153 (177)
32 TIGR03268 methan_mark_3 putati 82.1 1.1 2.5E-05 50.3 3.2 64 25-93 240-303 (503)
33 PRK00969 hypothetical protein; 81.0 1.2 2.6E-05 50.2 3.0 64 25-93 243-306 (508)
34 KOG2985 Uncharacterized conser 76.2 1.4 2.9E-05 45.8 1.5 15 187-201 233-247 (306)
35 COG4070 Predicted peptidyl-pro 61.5 5.1 0.00011 44.1 2.1 64 25-93 242-305 (512)
36 PF04126 Cyclophil_like: Cyclo 60.0 8 0.00017 35.6 2.9 48 41-93 59-113 (120)
37 KOG4368 Predicted RNA binding 53.4 32 0.0007 39.8 6.6 18 292-309 346-363 (757)
38 PRK00969 hypothetical protein; 40.8 62 0.0013 37.0 6.4 52 42-93 114-167 (508)
39 TIGR03268 methan_mark_3 putati 38.5 78 0.0017 36.2 6.7 52 42-93 110-164 (503)
40 KOG4368 Predicted RNA binding 36.0 88 0.0019 36.5 6.6 12 387-398 650-661 (757)
41 KOG0526 Nucleosome-binding fac 35.7 1.2E+02 0.0025 35.2 7.5 15 54-68 389-403 (615)
42 PF05913 DUF871: Bacterial pro 34.9 21 0.00046 39.0 1.6 51 42-93 298-349 (357)
43 KOG2548 SWAP mRNA splicing reg 31.8 35 0.00076 39.1 2.7 8 390-397 389-396 (653)
44 KOG3794 CBF1-interacting corep 30.2 6.7 0.00015 43.1 -3.0 8 59-66 142-149 (453)
45 KOG2236 Uncharacterized conser 28.9 30 0.00065 39.0 1.6 14 75-88 251-264 (483)
46 KOG2140 Uncharacterized conser 25.9 70 0.0015 37.0 3.7 10 159-168 663-672 (739)
47 KOG2138 Predicted RNA binding 23.3 23 0.00049 41.8 -0.6 50 197-248 807-856 (883)
48 KOG2146 Splicing coactivator S 21.0 1.1E+03 0.024 25.7 13.4 8 334-341 164-171 (354)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-39 Score=334.65 Aligned_cols=116 Identities=65% Similarity=1.062 Sum_probs=112.4
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGK 80 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGr 80 (588)
+|||||++||||||||+.|||+||++|||..|+||+|.|+|+.+++|+|||.||||||||||||+.++|||||+|||||+
T Consensus 65 ~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGq 144 (372)
T KOG0546|consen 65 RFHRVIKNFMIQGGDFSEGNGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQ 144 (372)
T ss_pred hhheeeecceeeccccccCCCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCHHHHHHHHhcCCC-CCCcCCCeEeccccccccc
Q 007835 81 VVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSES 116 (588)
Q Consensus 81 VveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~ 116 (588)
||.|++||..|+++.|+ +.+|+.+|.|.+||+|...
T Consensus 145 VI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 145 VIKGKEVVREIENLETDEESKPLADVVISDCGELVKK 181 (372)
T ss_pred EeechhHHHHHhccccccCCCCccceEeccccccccc
Confidence 99999999999999998 4589999999999998764
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-37 Score=294.55 Aligned_cols=116 Identities=62% Similarity=1.064 Sum_probs=112.7
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGK 80 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGr 80 (588)
.||||||||||||||++.++|+|+.+|||..|+||||.|+|+.+|.|+|||.|+|+||||||||+...+||||+||||||
T Consensus 89 ~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGq 168 (217)
T KOG0880|consen 89 KFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQ 168 (217)
T ss_pred eeeeeecCceeecCccccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEee
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCHHHHHHHHhcCCC-CCCcCCCeEeccccccccc
Q 007835 81 VVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSES 116 (588)
Q Consensus 81 VveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~ 116 (588)
|++||+||.+|+.+.++ .++|+++|+|.+|++|...
T Consensus 169 Vl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~ 205 (217)
T KOG0880|consen 169 VLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVE 205 (217)
T ss_pred ehhhHHHHHHHHhcccCCCCCccccEEEeecCccccc
Confidence 99999999999999998 7899999999999998664
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=261.85 Aligned_cols=113 Identities=65% Similarity=1.124 Sum_probs=110.7
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGK 80 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGr 80 (588)
+|||||++||||||||..|+|+|-.+|||.+|+||+|.|+|+.+|+|+|||.|+++||+|||||.....+||++|||||+
T Consensus 64 tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGr 143 (177)
T KOG0879|consen 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGR 143 (177)
T ss_pred chHHHhhhheeccCceecCCCceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCHHHHHHHHhcCCC-CCCcCCCeEecccccc
Q 007835 81 VVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEF 113 (588)
Q Consensus 81 VveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil 113 (588)
|++||.|+.+|+.++++ +.+|..+|.|+.||++
T Consensus 144 vldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 144 VLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred eehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 99999999999999998 8899999999999974
No 4
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-33 Score=256.22 Aligned_cols=111 Identities=57% Similarity=0.966 Sum_probs=106.5
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCC-CCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE-~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+|||||++|||||||+ +|+|.||.+|||..|+|| +..|+|..+|+|+|||+|||+|||||||||.+.+||||+|||||
T Consensus 50 ~FHRii~DFmiQGGDP-TGTGRGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFG 128 (164)
T KOG0881|consen 50 IFHRIIKDFMIQGGDP-TGTGRGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFG 128 (164)
T ss_pred eeeehhhhheeecCCC-CCCCCCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeeh
Confidence 6999999999999998 799999999999999999 78899999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEeccccc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 112 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gi 112 (588)
+|+.||+|+..|..+.++ +.+|+.+|+|+.+..
T Consensus 129 RV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 129 RVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred hhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 999999999999999998 789999999998764
No 5
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-32 Score=266.97 Aligned_cols=113 Identities=67% Similarity=1.135 Sum_probs=111.3
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGK 80 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGr 80 (588)
.||||||.||+|||||+.++|+||.+|||..|.||+|.|+|..+|+|+|||.|+|+||||||||+....|||++|||||.
T Consensus 185 sfhriip~fmcqggdftn~ngtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfgh 264 (298)
T KOG0111|consen 185 SFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGH 264 (298)
T ss_pred chhhhhhhhhccCCccccCCCCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCHHHHHHHHhcCCCCCCcCCCeEecccccc
Q 007835 81 VVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113 (588)
Q Consensus 81 VveG~eVLdkIe~v~t~~g~P~~~VkI~~~gil 113 (588)
||+||+||.+|++.+...++|.+.|+|..||+|
T Consensus 265 v~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 265 VVEGMNVVRQVEQQGSKSGKPQQKVKIVECGEI 297 (298)
T ss_pred ecchHHHHHHHHhccCCCCCcceEEEEEecccc
Confidence 999999999999999999999999999999987
No 6
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-31 Score=279.06 Aligned_cols=111 Identities=58% Similarity=0.892 Sum_probs=107.2
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCC-CCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE-~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+|||||+|||||+||+ .|+|+||++|||..|+|| +..|.|+.+.+|+|||+|+|+||||||||+.++|||||+|||||
T Consensus 445 ~fhriik~fmiqtgdp-~g~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfg 523 (558)
T KOG0882|consen 445 TFHRIIKGFMIQTGDP-LGDGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFG 523 (558)
T ss_pred chHHhhhhheeecCCC-CCCCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEE
Confidence 6999999999999998 799999999999999999 68899999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEeccccc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 112 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gi 112 (588)
+|+.||+||+.|+++.++ +++|+++|+|+++.+
T Consensus 524 rv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 524 RVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred EEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 999999999999999998 899999999999764
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.97 E-value=2.6e-30 Score=251.36 Aligned_cols=113 Identities=63% Similarity=1.060 Sum_probs=108.1
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGK 80 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGr 80 (588)
+||||+++|||||||+..++|+|+.++|+..|++|++.+.|+.+|+|+||+.++++++|||||||.++++||++|||||+
T Consensus 72 ~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~ 151 (186)
T PLN03149 72 QFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGR 151 (186)
T ss_pred EEEEEcCCcEEEcCCcccCCCCCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEE
Confidence 59999999999999998889999999999999999888999999999999999999999999999999999999999999
Q ss_pred EE-eCHHHHHHHHhcCCC-CCCcCCCeEecccccc
Q 007835 81 VV-KGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEF 113 (588)
Q Consensus 81 Vv-eG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil 113 (588)
|+ +||+||++|+.++++ +++|+++|+|.+||++
T Consensus 152 Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 152 VLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred EEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 99 799999999999995 7899999999999985
No 8
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.97 E-value=4.2e-30 Score=244.59 Aligned_cols=111 Identities=71% Similarity=1.229 Sum_probs=106.7
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGK 80 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGr 80 (588)
.||||+++|||||||+..++++++.++||..|++|.+.+.|+.+|+|+||+.++++++|||||||+++++||++|||||+
T Consensus 54 ~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~ 133 (164)
T cd01926 54 TFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGK 133 (164)
T ss_pred EEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEE
Confidence 49999999999999998888999999999999999888999999999999999999999999999999999999999999
Q ss_pred EEeCHHHHHHHHhcCCCCCCcCCCeEecccc
Q 007835 81 VVKGLNIVKKIEQVGTGDGKPAQPVKIIDCG 111 (588)
Q Consensus 81 VveG~eVLdkIe~v~t~~g~P~~~VkI~~~g 111 (588)
|++|||||++|+++++++++|+.+|+|.+||
T Consensus 134 V~~G~dvl~~i~~~~~~~~~P~~~i~I~~cG 164 (164)
T cd01926 134 VVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164 (164)
T ss_pred EEEcHHHHHHHHcCCCCCCCCcCCeEEEECC
Confidence 9999999999999999888999999999997
No 9
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=273.03 Aligned_cols=117 Identities=54% Similarity=0.897 Sum_probs=112.4
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCC-CCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE-~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+|||.|.||||||||+ +|+|.||++|||.+|.|| ...|.|+.+|+|+|||.|+|+||||||||+..+.|||++|||||
T Consensus 318 ~FHRsIrnFmiQGGDP-TGTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFG 396 (518)
T KOG0883|consen 318 IFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFG 396 (518)
T ss_pred HHHHHHHHHeeeCCCC-CCCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeee
Confidence 5999999999999998 799999999999999999 57899999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEeccccccccccc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESKI 118 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~k~ 118 (588)
+||-|+++|++|+.|+++ ...|+++|+|..+.+++|++.
T Consensus 397 rvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfe 436 (518)
T KOG0883|consen 397 RVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFE 436 (518)
T ss_pred eeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHH
Confidence 999999999999999998 678999999999999999863
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.96 E-value=9.7e-30 Score=241.27 Aligned_cols=116 Identities=55% Similarity=0.919 Sum_probs=108.8
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCC-CCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~-~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+||||+++|||||||+ .++|.|+.++|+..|++|. ..+.|+.+|+|+||+.++++++|||||||+++++||++|||||
T Consensus 40 ~f~rv~~~~~iq~Gd~-~~~g~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG 118 (159)
T cd01923 40 IFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFG 118 (159)
T ss_pred EEEEEeCCcEEEeccc-CCCCCCCccccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEE
Confidence 5999999999999998 5788999999999999994 5678999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEecccccccccc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 117 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~k 117 (588)
+|++||+||++|+.++++ +++|+.+|+|.+|+++.|++
T Consensus 119 ~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf 157 (159)
T cd01923 119 RVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPF 157 (159)
T ss_pred EEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCC
Confidence 999999999999999875 78999999999999999875
No 11
>PTZ00060 cyclophilin; Provisional
Probab=99.96 E-value=8.4e-30 Score=247.06 Aligned_cols=113 Identities=65% Similarity=1.097 Sum_probs=108.4
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGK 80 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGr 80 (588)
+||||+|+|||||||+..++|+++.++||..|++|.+.+.|+.+|+|+||+.++++++|||||||.++++||++|||||+
T Consensus 70 ~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~ 149 (183)
T PTZ00060 70 IFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGK 149 (183)
T ss_pred EEEEEcCCCeEEeCCccCCCCCCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEE
Confidence 49999999999999998788999999999999999889999999999999999999999999999999999999999999
Q ss_pred EEeCHHHHHHHHhcCCCCCCcCCCeEecccccc
Q 007835 81 VVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113 (588)
Q Consensus 81 VveG~eVLdkIe~v~t~~g~P~~~VkI~~~gil 113 (588)
||+|||||++|+.+++.++.|+.+|+|.+||+|
T Consensus 150 Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 150 VIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGEL 182 (183)
T ss_pred EEccHHHHHHHHccCCCCCCCcCCeEEEEeEEc
Confidence 999999999999999888899999999999987
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.9e-30 Score=241.23 Aligned_cols=109 Identities=55% Similarity=0.914 Sum_probs=96.9
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCC--CcEEEEeccC-CCCCCceEEEecCCCCCCCCCCcE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNG--PGILSMANSG-ANTNGSQFFITFRRQHHLDGKHVV 77 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~--~G~LsMa~~g-pdtnGSQFFITL~~~p~LDgk~vV 77 (588)
+|||||++|||||||++.++|+|++ +..|++|++.+.|+. +|+|+||+.+ ||+|+||||||+.+++|||++|+|
T Consensus 40 ~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytV 116 (158)
T COG0652 40 IFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTV 116 (158)
T ss_pred eEEEeecCceeecCCCCCCCCCCCC---CCCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcE
Confidence 5999999999999999877799888 488999988888877 9999999999 999999999999999999999999
Q ss_pred EEEEEeCHHHHHHHHhcCCCC-----CCcCCCeEeccccc
Q 007835 78 FGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIIDCGE 112 (588)
Q Consensus 78 FGrVveG~eVLdkIe~v~t~~-----g~P~~~VkI~~~gi 112 (588)
||+||+|||||++|+++.+.. ..|..+|+|..+.+
T Consensus 117 FG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 117 FGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156 (158)
T ss_pred EEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence 999999999999999987762 34556777766554
No 13
>PTZ00221 cyclophilin; Provisional
Probab=99.96 E-value=2.1e-29 Score=254.37 Aligned_cols=115 Identities=32% Similarity=0.507 Sum_probs=106.1
Q ss_pred CEEEEEcC-cEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKG-FMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipg-fvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+||||+++ |||||||+.. ++.++||..|.+|++.++|+.+|+|+||+.++|+|||||||||.++++||++|||||
T Consensus 109 ~FhRVi~~~f~iqgGD~~~----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFG 184 (249)
T PTZ00221 109 PVHHVDRNNNIIVLGELDS----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFG 184 (249)
T ss_pred EEEEEeCCCCEEEeCCCCC----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEE
Confidence 59999986 9999999853 245788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEecccccccccccc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESKIQ 119 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~k~~ 119 (588)
+||+||+||++|+.++++ +++|+++|+|.+|++|.+++..
T Consensus 185 rVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 185 KAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKPP 225 (249)
T ss_pred EEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCCCCC
Confidence 999999999999999875 7899999999999999987644
No 14
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.96 E-value=4.1e-29 Score=234.41 Aligned_cols=109 Identities=58% Similarity=0.941 Sum_probs=101.7
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCC-CCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~-~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
.||||+++|||||||+ .++|+|++++|+..|++|.. .+.|+.+|+|+||+.++++++|||||||+++|+||++|||||
T Consensus 38 ~f~Rvi~~f~iq~Gd~-~~~g~g~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG 116 (148)
T cd01927 38 IFHRVIKGFMIQTGDP-TGDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 116 (148)
T ss_pred EEEEEcCCcEEEeccc-CCCCCCCCcccCCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEE
Confidence 4999999999999997 57889999999999999964 788998999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEeccc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDC 110 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~ 110 (588)
+|++|||||++|+.++++ +++|+++|+|..+
T Consensus 117 ~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 117 RVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred EEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 999999999999999986 7899999999863
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.96 E-value=5.6e-29 Score=233.17 Aligned_cols=108 Identities=56% Similarity=0.979 Sum_probs=101.2
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCC-CCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE-~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+||||+++|||||||+ .++|.++.++|+..|++| +..++|+.+|+|+||+.++++++|||||||+++|+||++|||||
T Consensus 38 ~f~Rvi~~f~iq~Gd~-~~~g~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG 116 (146)
T cd01922 38 IFHRLIKDFMIQGGDP-TGTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFG 116 (146)
T ss_pred EEEEEcCCcEEEeccc-CCCCCCcccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEE
Confidence 5999999999999997 577888999999999999 46788999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCCCCCcCCCeEecc
Q 007835 80 KVVKGLNIVKKIEQVGTGDGKPAQPVKIID 109 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~~g~P~~~VkI~~ 109 (588)
+|++|||||++|+.+++++++|+++|+|+.
T Consensus 117 ~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 117 RVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred EEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 999999999999999988889999999963
No 16
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.96 E-value=6.7e-29 Score=236.92 Aligned_cols=116 Identities=41% Similarity=0.695 Sum_probs=104.7
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccC-------CCCCCCC-CCCCCCCCcEEEEeccCCCCCCceEEEecCC-CCCC
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYG-------GKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRR-QHHL 71 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG-------~~f~dE~-~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~-~p~L 71 (588)
+|||||++|||||||+ .+++.++.++|+ ..|.+|. ..+.|+.+|+|+||+.++++++|||||||.+ +++|
T Consensus 38 ~fhrvi~~f~iQgGd~-~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~L 116 (166)
T cd01921 38 LFYNVQKDFIAQTGDP-TGTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYL 116 (166)
T ss_pred EEEEEeCCceEEECCc-CCCCCCCcccccccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCccc
Confidence 5999999999999998 477888888875 2466674 5788999999999999999999999999975 7999
Q ss_pred CCCCcEEEEEEeCHHHHHHHHhcCCC-CCCcCCCeEecccccccccc
Q 007835 72 DGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 117 (588)
Q Consensus 72 Dgk~vVFGrVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~k 117 (588)
|++|||||+||+|||||++|+.++++ ++.|+.+|+|..|+||.+++
T Consensus 117 dg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~pf 163 (166)
T cd01921 117 DGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDDPF 163 (166)
T ss_pred CCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECCCC
Confidence 99999999999999999999999886 78999999999999999986
No 17
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.96 E-value=6.6e-29 Score=234.36 Aligned_cols=110 Identities=52% Similarity=0.895 Sum_probs=102.8
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCC-CCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~-~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+||||+++|||||||+ .++|.|+.++|+..|++|.. .+.|+++|+|+||+.++++++|||||||+++++||++|||||
T Consensus 41 ~f~rv~~~f~iq~Gd~-~~~g~g~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG 119 (153)
T cd01928 41 IFHRNIKGFMVQTGDP-TGTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFG 119 (153)
T ss_pred EEEEeCCCCEEEcccc-CCCCCCCCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEE
Confidence 5999999999999998 57888999999999999965 578889999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEecccc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCG 111 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~g 111 (588)
+|++|||||++|++++++ +++|..+|+|.+|.
T Consensus 120 ~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 120 KVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred EEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 999999999999999985 78999999999884
No 18
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.8e-29 Score=223.46 Aligned_cols=116 Identities=49% Similarity=0.764 Sum_probs=108.2
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCC-CCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~-~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+||+-+++||||+||+ ...|.||++|||.+|+||. .-|+|+.+|+|+|||.|||+|+||||||++.+||||-+|||||
T Consensus 41 ~~~~~~~~f~v~~~~~-~~tgrgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfg 119 (161)
T KOG0884|consen 41 IFHRNIKGFMVQTGDP-THTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFG 119 (161)
T ss_pred eecCCCCCcEEEeCCC-CCCCCCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeee
Confidence 5999999999999998 6899999999999999994 5688999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC--CCCcCCCeEecccccccccc
Q 007835 80 KVVKGLNIVKKIEQVGTG--DGKPAQPVKIIDCGEFSESK 117 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~--~g~P~~~VkI~~~gil~d~k 117 (588)
+||+|+|.|++|+.+++. +.+|+.++.|.++.|...+.
T Consensus 120 kvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp~ 159 (161)
T KOG0884|consen 120 KVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPF 159 (161)
T ss_pred eeccchhhHHHHhhcccCccccccchheeeeeeEEecCcC
Confidence 999999999999999987 57999999999998765543
No 19
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.95 E-value=2.3e-27 Score=227.57 Aligned_cols=116 Identities=45% Similarity=0.798 Sum_probs=106.8
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCC-CCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~-~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+||||+++|||||||+ .++|+|+.++||..|++|.. .+.|+.+|+|+||+.++++++|||||||+++++||++|||||
T Consensus 46 ~f~Rvi~~f~iQgGd~-~~~g~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG 124 (171)
T cd01925 46 IFHRVVPGFIIQGGDP-TGTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFG 124 (171)
T ss_pred EEEEEcCCcEEEcccc-CCCCccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEE
Confidence 5999999999999997 57899999999999999954 577999999999999999999999999999999999999999
Q ss_pred EEE-eCHHHHHHHHhcCCC-CCCcCCCeEecccccccccc
Q 007835 80 KVV-KGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 117 (588)
Q Consensus 80 rVv-eG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~k 117 (588)
+|+ ++|++|++|+.+.++ +++|+++|+|..|+++.+++
T Consensus 125 ~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~pf 164 (171)
T cd01925 125 KVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPF 164 (171)
T ss_pred EEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCCc
Confidence 999 468889999999886 68999999999999998875
No 20
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-27 Score=245.56 Aligned_cols=116 Identities=43% Similarity=0.763 Sum_probs=109.5
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCC-CCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE-~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
+||||+|||+|||||| +|+|+||++|||.+|.+| +..|.+..+|+|+|||.+.+.|||||||||+++|+|+++|||||
T Consensus 53 ~fhrlvp~f~~Qggdp-~~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFG 131 (439)
T KOG0885|consen 53 EFHRLVPGFLVQGGDP-TGTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFG 131 (439)
T ss_pred eeeeeccchhcccCCC-CCCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceee
Confidence 5999999999999998 799999999999999999 77899999999999999999999999999999999999999999
Q ss_pred EEE-eCHHHHHHHHhcCCC-CCCcCCCeEecccccccccc
Q 007835 80 KVV-KGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 117 (588)
Q Consensus 80 rVv-eG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~k 117 (588)
+|+ .-|..|-+|..+.++ +.+|+.+-+|+.|.|+..++
T Consensus 132 KVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npF 171 (439)
T KOG0885|consen 132 KVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPF 171 (439)
T ss_pred eecchhhhhhhhhcccccccccCCCCccceeeeEeecCch
Confidence 999 588888999988887 78999999999999998874
No 21
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.5e-27 Score=223.73 Aligned_cols=113 Identities=63% Similarity=1.096 Sum_probs=108.4
Q ss_pred CEEE---EEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcE
Q 007835 1 MFHR---IIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVV 77 (588)
Q Consensus 1 ~FhR---VipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vV 77 (588)
+||+ ++++||+||||++.++|+|+.+||++.|.||++.|+|..+|+|+|||.+||+||+|||||+....|||++|||
T Consensus 52 ~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVV 131 (167)
T KOG0865|consen 52 CFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVV 131 (167)
T ss_pred hhhhccccccceeeccCcccccCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeE
Confidence 6899 4457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCHHHHHHHHhcCCCCCCcCCCeEecccccc
Q 007835 78 FGKVVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 113 (588)
Q Consensus 78 FGrVveG~eVLdkIe~v~t~~g~P~~~VkI~~~gil 113 (588)
||+|++||+||++|+..+..++++...|.|.+||+|
T Consensus 132 fGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 132 FGKVKEGMDIVEAMERFGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred cCceEcccchhhhhhccCCcCCcccccEEEecCCcC
Confidence 999999999999999999999999999999999975
No 22
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.93 E-value=1e-25 Score=219.94 Aligned_cols=110 Identities=38% Similarity=0.589 Sum_probs=94.2
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccC-CCCCCceEEEecCCCCCCCC-----C
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----K 74 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~g-pdtnGSQFFITL~~~p~LDg-----k 74 (588)
+|||||++|||||||+....+ ..+++..|.+|....+|+.+|+|+||+.+ +|+|+|||||||.++++||+ +
T Consensus 69 ~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ 145 (190)
T PRK10903 69 TFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFG 145 (190)
T ss_pred EEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCC
Confidence 599999999999999754322 23356678888666677889999999864 89999999999999999984 8
Q ss_pred CcEEEEEEeCHHHHHHHHhcCCCC-----CCcCCCeEecccccc
Q 007835 75 HVVFGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIIDCGEF 113 (588)
Q Consensus 75 ~vVFGrVveG~eVLdkIe~v~t~~-----g~P~~~VkI~~~gil 113 (588)
|||||+|++|||||++|+.+++++ +.|+.+|+|..|.++
T Consensus 146 ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 146 YAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred ccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEe
Confidence 999999999999999999998863 689999999999875
No 23
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.93 E-value=1.5e-25 Score=213.96 Aligned_cols=109 Identities=36% Similarity=0.568 Sum_probs=91.1
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccC-CCCCCceEEEecCCCCCCC-------
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLD------- 72 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~g-pdtnGSQFFITL~~~p~LD------- 72 (588)
+||||+++|||||||+..+.+. .+++..|++|....+|+.+|+|+||+.+ +++++|||||||.++++||
T Consensus 40 ~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d 116 (164)
T PRK10791 40 IFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQ 116 (164)
T ss_pred EEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccC
Confidence 5999999999999997544332 2346678888544455679999999875 9999999999999988776
Q ss_pred C-CCcEEEEEEeCHHHHHHHHhcCCCC-----CCcCCCeEeccccc
Q 007835 73 G-KHVVFGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIIDCGE 112 (588)
Q Consensus 73 g-k~vVFGrVveG~eVLdkIe~v~t~~-----g~P~~~VkI~~~gi 112 (588)
+ +|||||+|++|||||++|+.+.++. +.|+.+|+|..|.|
T Consensus 117 ~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i 162 (164)
T PRK10791 117 GWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162 (164)
T ss_pred CCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEE
Confidence 3 7999999999999999999998863 68999999999865
No 24
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.92 E-value=2.9e-25 Score=209.92 Aligned_cols=106 Identities=35% Similarity=0.515 Sum_probs=89.3
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcEEEEeccC-CCCCCceEEEecCCCCCCCC-----C
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----K 74 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~h~~~G~LsMa~~g-pdtnGSQFFITL~~~p~LDg-----k 74 (588)
+||||+++|||||||+..+.+. ..++..|.+|....+|+.+|+|+||+.+ +++++|||||||.++++||+ +
T Consensus 38 ~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ 114 (155)
T cd01920 38 IFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWG 114 (155)
T ss_pred EEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCC
Confidence 4999999999999998543322 2346678888666667889999999865 89999999999999999995 7
Q ss_pred CcEEEEEEeCHHHHHHHHhcCCCC-----CCcCCCeEecc
Q 007835 75 HVVFGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIID 109 (588)
Q Consensus 75 ~vVFGrVveG~eVLdkIe~v~t~~-----g~P~~~VkI~~ 109 (588)
|||||+|++|||||++|+.+++++ ..|+.+|+|..
T Consensus 115 ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 115 YTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred ccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 999999999999999999999864 47888888764
No 25
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-25 Score=229.81 Aligned_cols=116 Identities=41% Similarity=0.673 Sum_probs=106.9
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCC-------CCCC-CCCCCCCCCcEEEEeccCCCCCCceEEEecCCC-CCC
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGK-------FTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQ-HHL 71 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~-------f~dE-~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~-p~L 71 (588)
+||.|..+|++|+||| +|+|.||++||+.. |++| .+.|.|...|+|+|+++|.|.+||||||||+++ ..|
T Consensus 41 lfh~vq~~f~aQTGDP-tGtG~GG~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyL 119 (479)
T KOG0415|consen 41 LFHTVQRDFTAQTGDP-TGTGDGGESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYL 119 (479)
T ss_pred eeeeccccceeecCCC-CCCCCCcceeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEcccccccc
Confidence 5999999999999998 67999999999754 5667 577999999999999999999999999999985 589
Q ss_pred CCCCcEEEEEEeCHHHHHHHHhcCCC-CCCcCCCeEecccccccccc
Q 007835 72 DGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 117 (588)
Q Consensus 72 Dgk~vVFGrVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d~k 117 (588)
||+|+|||+|++|||+|.+|+...++ ++.|+++|+|.+..||.|++
T Consensus 120 Dg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLdDPF 166 (479)
T KOG0415|consen 120 DGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILDDPF 166 (479)
T ss_pred ccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEecCCC
Confidence 99999999999999999999987776 88999999999999999986
No 26
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.91 E-value=7.1e-24 Score=196.35 Aligned_cols=107 Identities=61% Similarity=0.949 Sum_probs=95.2
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCCcccCCCCCCCCCCCC-CCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEE
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLD-HNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFG 79 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~siyG~~f~dE~~~l~-h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFG 79 (588)
.||||+++|+|||||+....+.+ .+++..|++|..... |+++|+|+|++.+++++++||||||.++++||++|+|||
T Consensus 38 ~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG 115 (146)
T cd00317 38 TFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFG 115 (146)
T ss_pred EEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEE
Confidence 49999999999999986544332 466778999966655 899999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhcCCC-CCCcCCCeEecc
Q 007835 80 KVVKGLNIVKKIEQVGTG-DGKPAQPVKIID 109 (588)
Q Consensus 80 rVveG~eVLdkIe~v~t~-~g~P~~~VkI~~ 109 (588)
+|++||+||++|+.++++ ++.|+.+|+|..
T Consensus 116 ~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 116 KVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred EEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 999999999999999987 899999999963
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.90 E-value=5.4e-24 Score=205.52 Aligned_cols=92 Identities=36% Similarity=0.642 Sum_probs=78.0
Q ss_pred CEEEEEcCcEEEeCCCCCCCCC---------------------CCCcccCCCCC-----CCCCCCCCCCCcEEEEeccC-
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGT---------------------GGESIYGGKFT-----DENFKLDHNGPGILSMANSG- 53 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~Gt---------------------Gg~siyG~~f~-----dE~~~l~h~~~G~LsMa~~g- 53 (588)
+|||||++|||||||+... ++ ++.++|+..|. ++++.++|+++|+|+||+.+
T Consensus 38 ~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~ 116 (176)
T cd01924 38 EFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEF 116 (176)
T ss_pred EEEEecCCcEEEecCCCCC-CCCcccccccccccccceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCC
Confidence 5999999999999998533 21 23456766553 45677889999999999987
Q ss_pred -CCCCCceEEEecC-------CCCCCCCCCcEEEEEEeCHHHHHHHHh
Q 007835 54 -ANTNGSQFFITFR-------RQHHLDGKHVVFGKVVKGLNIVKKIEQ 93 (588)
Q Consensus 54 -pdtnGSQFFITL~-------~~p~LDgk~vVFGrVveG~eVLdkIe~ 93 (588)
+|+++|||||||+ .+++||++|||||+||+|||||++|+.
T Consensus 117 ~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 117 DPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred CCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 6999999999998 789999999999999999999999975
No 28
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.89 E-value=3.5e-23 Score=193.30 Aligned_cols=111 Identities=49% Similarity=0.773 Sum_probs=93.5
Q ss_pred CEEEEEcCcEEEeCCCCCCCCCCCC-cccCCCCCCCCC-CCCCCCCcEEEEeccC--CCCCCceEEEecCCCCCCCCCCc
Q 007835 1 MFHRIIKGFMIQGGDFSKGNGTGGE-SIYGGKFTDENF-KLDHNGPGILSMANSG--ANTNGSQFFITFRRQHHLDGKHV 76 (588)
Q Consensus 1 ~FhRVipgfvIQgGD~~~g~GtGg~-siyG~~f~dE~~-~l~h~~~G~LsMa~~g--pdtnGSQFFITL~~~p~LDgk~v 76 (588)
.||+|+++++|||||+......+.. ...+..+++|.. .++++.+|+|+|++.+ ++++++||||||.++++||++|+
T Consensus 41 ~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~ 120 (155)
T PF00160_consen 41 KFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYT 120 (155)
T ss_dssp BEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSE
T ss_pred eeecccccceeeeeeccCCCCcccccccCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCcccccee
Confidence 4999999999999998554432211 223446888863 4455589999999976 78899999999999999999999
Q ss_pred EEEEEEeCHHHHHHHHhcCCCCCCcCCCeEeccccc
Q 007835 77 VFGKVVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGE 112 (588)
Q Consensus 77 VFGrVveG~eVLdkIe~v~t~~g~P~~~VkI~~~gi 112 (588)
|||+|++||+||++|+.+++++ +|.++|.|.+|+|
T Consensus 121 vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~cgv 155 (155)
T PF00160_consen 121 VFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISSCGV 155 (155)
T ss_dssp EEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEEEEE
T ss_pred eeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEEeEC
Confidence 9999999999999999998888 9999999999986
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0059 Score=66.97 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=85.5
Q ss_pred EEEEEcCcEEEeCCCCCCCCCCCC-ccc-CC---CCCC--CCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCC
Q 007835 2 FHRIIKGFMIQGGDFSKGNGTGGE-SIY-GG---KFTD--ENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGK 74 (588)
Q Consensus 2 FhRVipgfvIQgGD~~~g~GtGg~-siy-G~---~f~d--E~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk 74 (588)
|-+|+..+++|.||...-...+|. ..| +. .|+. .++.++|. .-++.+........+-+|+|+-...+.|..+
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcc
Confidence 568999999999996443333332 112 11 1333 36777776 7788888877777789999999999999999
Q ss_pred CcEEEEEEeCHHHHHHHHhcCCC-CCCcCCCeEecccccccc
Q 007835 75 HVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSE 115 (588)
Q Consensus 75 ~vVFGrVveG~eVLdkIe~v~t~-~g~P~~~VkI~~~gil~d 115 (588)
..|||.|+.|.+|++.|+.+.++ +..|..++.|.++.-..+
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR 264 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR 264 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhh
Confidence 99999999999999999998876 667777888877765444
No 30
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.022 Score=58.47 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=4.2
Q ss_pred CCCcchhhcc
Q 007835 191 SSSSGDRRRR 200 (588)
Q Consensus 191 S~~s~~rRkr 200 (588)
+|.+++...+
T Consensus 234 sD~sd~e~~r 243 (306)
T KOG2985|consen 234 SDESDDEDDR 243 (306)
T ss_pred cccccchhhh
Confidence 3334444444
No 31
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=94.74 E-value=0.076 Score=50.82 Aligned_cols=10 Identities=70% Similarity=0.630 Sum_probs=3.7
Q ss_pred CCCCccccCC
Q 007835 242 SSSDSESLSS 251 (588)
Q Consensus 242 s~Sds~s~s~ 251 (588)
+.+|+++.+.
T Consensus 144 SssdSdS~s~ 153 (177)
T KOG3116|consen 144 SSSDSDSESA 153 (177)
T ss_pred CCCccccccc
Confidence 3333333333
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=82.06 E-value=1.1 Score=50.25 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=44.4
Q ss_pred CcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEEEEeCHHHHHHHHh
Q 007835 25 ESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 93 (588)
Q Consensus 25 ~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGrVveG~eVLdkIe~ 93 (588)
....|..++.|++.. -..|+|.+-+.|.+. ...||--.+-+ .--.|+|+|+|+.|||+|+..+.
T Consensus 240 ~~L~g~~~p~En~~~--R~rGtVTVRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 240 DSLRGLDKPEENIEK--RRRGAVTVRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred ccccCccCCccccCc--ccceeEEEEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 344455555565433 348999999987542 35788776655 22369999999999999886654
No 33
>PRK00969 hypothetical protein; Provisional
Probab=81.03 E-value=1.2 Score=50.19 Aligned_cols=64 Identities=20% Similarity=0.430 Sum_probs=44.7
Q ss_pred CcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEEEEeCHHHHHHHHh
Q 007835 25 ESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 93 (588)
Q Consensus 25 ~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGrVveG~eVLdkIe~ 93 (588)
..+.|..++.|++.. -..|+|.+-+.|.+. ...||--.+-+ ---.|+|+|+|+.|||+|+..+.
T Consensus 243 ~~L~g~~~p~En~~~--R~~GtVTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 243 DRLQGLKIPEENFEP--RRRGTVTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred ccccCccCCccccCc--cccceEEEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 344455556665443 348999999987542 46788877655 22369999999999999876654
No 34
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.17 E-value=1.4 Score=45.79 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=7.5
Q ss_pred CCCCCCCcchhhccc
Q 007835 187 SPSESSSSGDRRRRK 201 (588)
Q Consensus 187 ~S~sS~~s~~rRkr~ 201 (588)
.++.+++-+++|=++
T Consensus 233 dsD~sd~e~~rrs~~ 247 (306)
T KOG2985|consen 233 DSDESDDEDDRRSKR 247 (306)
T ss_pred ccccccchhhhhhhh
Confidence 344555555555444
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=61.54 E-value=5.1 Score=44.14 Aligned_cols=64 Identities=23% Similarity=0.477 Sum_probs=43.8
Q ss_pred CcccCCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEEEEeCHHHHHHHHh
Q 007835 25 ESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 93 (588)
Q Consensus 25 ~siyG~~f~dE~~~l~h~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGrVveG~eVLdkIe~ 93 (588)
.++.+..++.||+.+.. +|+|.+.|.|-+ ....||--.+-+.. -.|.|+|+|++|||+|+..+.
T Consensus 242 ~~lq~~~~~~en~d~Re--rG~iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 242 DTLQEEKVPEENFDLRE--RGAITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred cccccccCChhhhhhhh--cceEEEEeeecc--cceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence 34445555566655544 899999987643 24678877654421 268999999999999887654
No 36
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=59.98 E-value=8 Score=35.63 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCCcEEEEeccCCCCCCceEEEecCCCC-------CCCCCCcEEEEEEeCHHHHHHHHh
Q 007835 41 HNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQ 93 (588)
Q Consensus 41 h~~~G~LsMa~~gpdtnGSQFFITL~~~p-------~LDgk~vVFGrVveG~eVLdkIe~ 93 (588)
-...|.|+....+.+ |-|.+++.| .+-...++||+|+.|+++|..|..
T Consensus 59 ~~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 59 SVEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp SB-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 346899998876544 777777774 456679999999999999888854
No 37
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=53.40 E-value=32 Score=39.79 Aligned_cols=18 Identities=33% Similarity=0.128 Sum_probs=7.7
Q ss_pred CchhcchhhhcccccCCC
Q 007835 292 SSHEEGELLLKNDKLQNN 309 (588)
Q Consensus 292 ~~~e~~~~~~~n~~~~~~ 309 (588)
.+++++..+.-||.+..|
T Consensus 346 ~~h~~~~~pg~pGp~~~n 363 (757)
T KOG4368|consen 346 NSHEGRGDPGWNGPWNNN 363 (757)
T ss_pred cccccCCCCCCCCCCCCC
Confidence 344444434445544433
No 38
>PRK00969 hypothetical protein; Provisional
Probab=40.84 E-value=62 Score=36.99 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCCcEEEEeccCCCCCCceEEEecCCCCCCCCC--CcEEEEEEeCHHHHHHHHh
Q 007835 42 NGPGILSMANSGANTNGSQFFITFRRQHHLDGK--HVVFGKVVKGLNIVKKIEQ 93 (588)
Q Consensus 42 ~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk--~vVFGrVveG~eVLdkIe~ 93 (588)
..++.|.|...|-|...+.|.|+..+....-|- --|||+||.|..||+.|..
T Consensus 114 y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 114 YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 357888999888777777777776653322221 2699999999999999975
No 39
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=38.45 E-value=78 Score=36.18 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=40.2
Q ss_pred CCCcEEEEeccCCCCCCceEEEecCCCCCCC---CCCcEEEEEEeCHHHHHHHHh
Q 007835 42 NGPGILSMANSGANTNGSQFFITFRRQHHLD---GKHVVFGKVVKGLNIVKKIEQ 93 (588)
Q Consensus 42 ~~~G~LsMa~~gpdtnGSQFFITL~~~p~LD---gk~vVFGrVveG~eVLdkIe~ 93 (588)
..++.|.|...|-|...+.|.|+..+....- ...-|||+||.|..||+.|..
T Consensus 110 y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 110 YERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 4588899999888877888888776543222 245799999999999999875
No 40
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=36.05 E-value=88 Score=36.45 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=6.0
Q ss_pred CCCCCCcCCCCC
Q 007835 387 NHSRGLSRSPSP 398 (588)
Q Consensus 387 ~~gr~~srs~sp 398 (588)
-++|+-+|++.+
T Consensus 650 SRsrS~srs~G~ 661 (757)
T KOG4368|consen 650 SRSRSKSYSPGR 661 (757)
T ss_pred CcccccccCCCC
Confidence 345555555544
No 41
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=35.71 E-value=1.2e+02 Score=35.15 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=9.3
Q ss_pred CCCCCceEEEecCCC
Q 007835 54 ANTNGSQFFITFRRQ 68 (588)
Q Consensus 54 pdtnGSQFFITL~~~ 68 (588)
..+-..-|-|+|...
T Consensus 389 t~trtFD~ei~lk~g 403 (615)
T KOG0526|consen 389 TSTRTFDFEITLKSG 403 (615)
T ss_pred cceeeEEEEEEEcCC
Confidence 344456778888654
No 42
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=34.90 E-value=21 Score=38.97 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCCcEEEEeccCCCCCCceEEEecCCCCCCCCCCcEEEEEEe-CHHHHHHHHh
Q 007835 42 NGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVK-GLNIVKKIEQ 93 (588)
Q Consensus 42 ~~~G~LsMa~~gpdtnGSQFFITL~~~p~LDgk~vVFGrVve-G~eVLdkIe~ 93 (588)
-..|.|.+.|..-...-.+..|++.+.| -|+..-|+|+|++ -+.+|+.|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp-~d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLP-ADERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCC-CCCCeeEEEEECHHHHHHHHhcCC
Confidence 4589999999877777789999999998 4899999999995 6788888753
No 43
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=31.84 E-value=35 Score=39.05 Aligned_cols=8 Identities=63% Similarity=0.613 Sum_probs=3.4
Q ss_pred CCCcCCCC
Q 007835 390 RGLSRSPS 397 (588)
Q Consensus 390 r~~srs~s 397 (588)
++-||+.+
T Consensus 389 rssSrsss 396 (653)
T KOG2548|consen 389 RSSSRSSS 396 (653)
T ss_pred cccccccc
Confidence 44444444
No 44
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=30.23 E-value=6.7 Score=43.08 Aligned_cols=8 Identities=13% Similarity=0.002 Sum_probs=4.9
Q ss_pred ceEEEecC
Q 007835 59 SQFFITFR 66 (588)
Q Consensus 59 SQFFITL~ 66 (588)
|-|||.+.
T Consensus 142 Cplf~~~~ 149 (453)
T KOG3794|consen 142 CPLFGKSM 149 (453)
T ss_pred Ccchhhcc
Confidence 66666654
No 45
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.89 E-value=30 Score=38.95 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=7.9
Q ss_pred CcEEEEEEeCHHHH
Q 007835 75 HVVFGKVVKGLNIV 88 (588)
Q Consensus 75 ~vVFGrVveG~eVL 88 (588)
|-|||.|-.-+.||
T Consensus 251 ~EiFGpV~~P~Yvv 264 (483)
T KOG2236|consen 251 FEIFGPVKNPYYVV 264 (483)
T ss_pred hhhhcccCCceEEE
Confidence 44666665555544
No 46
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.86 E-value=70 Score=37.03 Aligned_cols=10 Identities=30% Similarity=0.182 Sum_probs=3.9
Q ss_pred hccCCCCCCC
Q 007835 159 RKRRYPSSDS 168 (588)
Q Consensus 159 s~~~~~ss~s 168 (588)
+++.++++.+
T Consensus 663 ses~~ss~ss 672 (739)
T KOG2140|consen 663 SESGSSSSSS 672 (739)
T ss_pred cccccccccc
Confidence 3444433333
No 47
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=23.28 E-value=23 Score=41.77 Aligned_cols=50 Identities=28% Similarity=0.518 Sum_probs=0.0
Q ss_pred hhcccCCcccccccccccccccchhhhhhhhhhHHhhhcccCCCCCCCCccc
Q 007835 197 RRRRKRKPVKRGKRERGRKKKDGHREKRRSQRDKRLRRRSKMSSRSSSDSES 248 (588)
Q Consensus 197 rRkr~k~~~kr~K~kr~Krkr~krk~kr~~r~~krsk~~s~~~s~s~Sds~s 248 (588)
.++|.|.++++.|++..++++++++.+++.+.+++...+| +++++||.+.
T Consensus 807 ~kkK~k~kk~kekr~ksekskkhkkhkk~~~~k~rk~kkS--ss~~Ssd~sd 856 (883)
T KOG2138|consen 807 KKKKDKHKKKKEKRRKSEKSKKHKKHKKKGKQKNRKPKKS--SSSESSDSSD 856 (883)
T ss_pred hhhhhhhHHHHHHHHhhhhcccchhhcccchhhccCcccc--ccccccccch
No 48
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=20.99 E-value=1.1e+03 Score=25.65 Aligned_cols=8 Identities=50% Similarity=0.380 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 007835 334 RSLTPSPK 341 (588)
Q Consensus 334 rs~s~sp~ 341 (588)
+++++++.
T Consensus 164 rsRsrs~k 171 (354)
T KOG2146|consen 164 RSRSRSGK 171 (354)
T ss_pred ccccCCcc
Confidence 34444433
Done!