Query 007837
Match_columns 588
No_of_seqs 143 out of 405
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 6.5E-28 2.2E-32 216.4 13.2 119 349-470 4-127 (130)
2 4i1k_A B3 domain-containing tr 99.6 5.3E-15 1.8E-19 135.7 11.2 98 355-460 45-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 6.6E-13 2.3E-17 114.1 10.2 93 356-458 8-100 (104)
4 1na6_A Ecorii, restriction end 89.4 0.41 1.4E-05 50.9 5.8 91 356-446 18-123 (404)
5 3o27_A Putative uncharacterize 66.9 6 0.00021 32.8 4.2 41 419-459 23-63 (68)
6 3lqh_A Histone-lysine N-methyl 56.7 5 0.00017 38.1 2.4 56 58-120 4-65 (183)
7 2lo3_A SAGA-associated factor 41.0 9.5 0.00032 29.3 1.2 16 77-92 13-28 (44)
8 2vb2_X Copper protein, cation 38.6 21 0.00071 30.1 3.1 24 432-455 59-82 (88)
9 2qcp_X Cation efflux system pr 38.1 22 0.00074 29.4 3.1 24 431-454 50-73 (80)
10 2k75_A Uncharacterized protein 35.3 52 0.0018 28.1 5.2 46 394-460 40-88 (106)
11 3mhs_E SAGA-associated factor 26.8 17 0.00057 32.0 0.6 13 79-91 73-85 (96)
12 4dok_A Similarity to chalcone- 25.2 50 0.0017 31.8 3.7 39 423-461 126-164 (208)
13 2l55_A SILB,silver efflux prot 24.2 53 0.0018 27.3 3.1 27 432-458 45-73 (82)
14 1mvf_D MAZE protein, PEMI-like 24.0 57 0.002 26.3 3.3 28 427-456 19-46 (82)
15 3m7a_A Uncharacterized protein 23.9 1.4E+02 0.0047 27.3 6.1 51 393-443 83-140 (140)
16 3e0e_A Replication protein A; 23.3 1.1E+02 0.0038 25.5 5.0 35 394-446 40-74 (97)
17 2fe0_A SMP-1, small myristoyla 22.5 62 0.0021 29.7 3.5 64 388-458 35-98 (136)
18 3ngh_A PDZ domain-containing p 20.3 95 0.0032 25.2 3.9 49 395-444 4-53 (106)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=6.5e-28 Score=216.43 Aligned_cols=119 Identities=38% Similarity=0.717 Sum_probs=100.4
Q ss_pred CCCCCcccceEEEecccccCCCCCcEEeehhhhcccCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceecc-
Q 007837 349 GDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE- 424 (588)
Q Consensus 349 ~d~ns~~~~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~---~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLe- 424 (588)
+..+.+..++|.|+||+|||++.+||+||+++|+.|||.++. .+++.|.++|.+|++|+|+|+|| +.+++|+|+
T Consensus 4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~ 81 (130)
T 1wid_A 4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTK 81 (130)
T ss_dssp ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEES
T ss_pred CCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcC
Confidence 445567788999999999999889999999999999999874 57899999999999999999999 567788886
Q ss_pred CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCCCcccccc
Q 007837 425 GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE 470 (588)
Q Consensus 425 GWs~FVRsK~LkaGDtVvF~R~e-pnGkL~IGvRRa~~~~~s~q~~~ 470 (588)
||..||++|+|++||+|+|++.+ .+++|+|++||+.... ++|.+.
T Consensus 82 GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~ 127 (130)
T 1wid_A 82 GWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP 127 (130)
T ss_dssp SHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred ChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence 99999999999999999999986 3468999999998654 455443
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.59 E-value=5.3e-15 Score=135.67 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=82.8
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 007837 355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (588)
Q Consensus 355 ~~~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~ 434 (588)
-.+.|.|+|++|||.+..+|.||++.++.|||.. ...+.++|. |+.|.+++.|+. +++++..||..||++++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~ 116 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENN 116 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTT
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcC
Confidence 3579999999999997678999999999999973 468889998 699999999982 35566679999999999
Q ss_pred CCCCCEEEEEEecCCC-eEEEEEEeCC
Q 007837 435 LQAGDIVTFSRLEPEG-KLVMGFRKAS 460 (588)
Q Consensus 435 LkaGDtVvF~R~epnG-kL~IGvRRa~ 460 (588)
|++||+|+|...+... .|.|.+-|+.
T Consensus 117 L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 117 LGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999986433 5778777764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.42 E-value=6.6e-13 Score=114.08 Aligned_cols=93 Identities=14% Similarity=0.282 Sum_probs=75.8
Q ss_pred cceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCC
Q 007837 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 435 (588)
Q Consensus 356 ~~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~L 435 (588)
.+.|.|+|+++|. ..+|.||++.++.+.+.+ +..+.++|..|+.|.+++..+. .+.++..||.+||++++|
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~L 78 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNNL 78 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHTC
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcCC
Confidence 4689999999994 369999999987766543 4689999999999999999872 344555699999999999
Q ss_pred CCCCEEEEEEecCCCeEEEEEEe
Q 007837 436 QAGDIVTFSRLEPEGKLVMGFRK 458 (588)
Q Consensus 436 kaGDtVvF~R~epnGkL~IGvRR 458 (588)
++||.|+|.... +..+.|-+=+
T Consensus 79 ~~GD~lvF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 79 EDGKYLQFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp CTTCEEEEEECS-SSEEEEEEEC
T ss_pred CCCCEEEEEEcC-CCeEEEEEEC
Confidence 999999998864 6677666544
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=89.40 E-value=0.41 Score=50.92 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=64.3
Q ss_pred cceEEEecccccCCC----CCcEEeehhhhcccCCCCCCC---CC-ceE--EEEeCCCCeEEEEEEEcCC----CCCcce
Q 007837 356 TPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---EG-LPL--KVQDSKGKEWIFQFRFWPN----NNSRMY 421 (588)
Q Consensus 356 ~~LF~KvLT~SDVg~----lgRLVIPK~~AE~~FP~L~~~---eG-~~L--~v~D~~GK~W~FRfryw~N----n~SR~Y 421 (588)
...|.|.|++.|++. ...+.+||...+.+||.|+.+ +. +.+ .+-|...-.+.++++|+-| ..+..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 478999999999995 358999997688999988722 21 222 2334434555999998821 234468
Q ss_pred eccCch-hhhhccCCCCCCEEEEEEe
Q 007837 422 VLEGVT-PCIQNMQLQAGDIVTFSRL 446 (588)
Q Consensus 422 VLeGWs-~FVRsK~LkaGDtVvF~R~ 446 (588)
-|+.|. .+.=.....+||.++|-+.
T Consensus 98 RLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEeecCCCCcccccCCCCCEEEEEEe
Confidence 888775 4455578899999988765
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=66.88 E-value=6 Score=32.84 Aligned_cols=41 Identities=10% Similarity=0.313 Sum_probs=34.3
Q ss_pred cceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeC
Q 007837 419 RMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 459 (588)
Q Consensus 419 R~YVLeGWs~FVRsK~LkaGDtVvF~R~epnGkL~IGvRRa 459 (588)
..|.+.==.+++++.+++.||.+...-++.+|++++..+|-
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhh
Confidence 34555555799999999999999998877799999999983
No 6
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=56.71 E-value=5 Score=38.14 Aligned_cols=56 Identities=20% Similarity=0.605 Sum_probs=44.0
Q ss_pred hh-ccccccccccccccccCCCCCccccccCCCccccchhhh-hhhhhhhh----cCCcceeccccccc
Q 007837 58 LC-VYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITS-VHAFTLLD----AGGIECMTCARKNV 120 (588)
Q Consensus 58 LC-~CgsayE~~~FCe~FH~~~sGWR~C~~C~KrlHCGCI~S-~~~~~lLD----~GGv~C~~Car~s~ 120 (588)
.| .|+..|..+.| ++-|-.|..|..-.|--|+-- ...+++++ ...-.|..|.++..
T Consensus 4 ~CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 58 78888888765 577999999999999999843 34567774 34779999998764
No 7
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=41.01 E-value=9.5 Score=29.27 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=13.2
Q ss_pred CCCCccccccCCCccc
Q 007837 77 NASGWRCCESCGKRVH 92 (588)
Q Consensus 77 ~~sGWR~C~~C~KrlH 92 (588)
...-+|.|++|||+|-
T Consensus 13 ~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCEEECTTTCCEEE
T ss_pred ccccchhhcccCCcch
Confidence 4567899999999873
No 8
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=38.62 E-value=21 Score=30.13 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.5
Q ss_pred ccCCCCCCEEEEEEecCCCeEEEE
Q 007837 432 NMQLQAGDIVTFSRLEPEGKLVMG 455 (588)
Q Consensus 432 sK~LkaGDtVvF~R~epnGkL~IG 455 (588)
-.+|++||.|.|.-...+|.|.|-
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it 82 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQ 82 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEE
Confidence 578999999999876656666553
No 9
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=38.09 E-value=22 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=18.3
Q ss_pred hccCCCCCCEEEEEEecCCCeEEE
Q 007837 431 QNMQLQAGDIVTFSRLEPEGKLVM 454 (588)
Q Consensus 431 RsK~LkaGDtVvF~R~epnGkL~I 454 (588)
--.+|++||.|.|.-...+|.|.|
T Consensus 50 ~l~~lk~Gd~V~F~~~~~~~~~~i 73 (80)
T 2qcp_X 50 KMSEIKTGDKVAFNFVQQGNLSLL 73 (80)
T ss_dssp EECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhhcCCCCCEEEEEEEEeCCEEEE
Confidence 357899999999977665666654
No 10
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=35.31 E-value=52 Score=28.07 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=33.8
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEe---cCCCeEEEEEEeCC
Q 007837 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKAS 460 (588)
Q Consensus 394 ~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~LkaGDtVvF~R~---epnGkL~IGvRRa~ 460 (588)
..+.+.|.+| ..+++.| ++. |++||+|.+... .-+|++.+.+-|..
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 4789999999 6889999 222 999999998732 24676666665544
No 11
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=26.84 E-value=17 Score=31.98 Aligned_cols=13 Identities=46% Similarity=1.112 Sum_probs=11.7
Q ss_pred CCccccccCCCcc
Q 007837 79 SGWRCCESCGKRV 91 (588)
Q Consensus 79 sGWR~C~~C~Krl 91 (588)
.-.|-|+.|||+|
T Consensus 73 ~~YRvCn~CGkPI 85 (96)
T 3mhs_E 73 IQYRVCEKCGKPL 85 (96)
T ss_dssp CCCEEETTTCCEE
T ss_pred ccchhhhccCCce
Confidence 5689999999997
No 12
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=25.22 E-value=50 Score=31.80 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=31.3
Q ss_pred ccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeCCC
Q 007837 423 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 461 (588)
Q Consensus 423 LeGWs~FVRsK~LkaGDtVvF~R~epnGkL~IGvRRa~~ 461 (588)
|....++.++..|+.||+|.|.+..+.|.|.|.+.+...
T Consensus 126 L~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 126 LEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHHHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 345667778889999999999998656999999886543
No 13
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=24.24 E-value=53 Score=27.34 Aligned_cols=27 Identities=26% Similarity=0.178 Sum_probs=18.7
Q ss_pred ccCCCCCCEEEEEEecCCC-eEEE-EEEe
Q 007837 432 NMQLQAGDIVTFSRLEPEG-KLVM-GFRK 458 (588)
Q Consensus 432 sK~LkaGDtVvF~R~epnG-kL~I-GvRR 458 (588)
-.+|++||.|.|.-...+| .|.| .+++
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~ 73 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAP 73 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEe
Confidence 4689999999987765444 6655 4444
No 14
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=23.99 E-value=57 Score=26.33 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.4
Q ss_pred hhhhhccCCCCCCEEEEEEecCCCeEEEEE
Q 007837 427 TPCIQNMQLQAGDIVTFSRLEPEGKLVMGF 456 (588)
Q Consensus 427 s~FVRsK~LkaGDtVvF~R~epnGkL~IGv 456 (588)
.++++..+|.+||.|.|... +|.++|.-
T Consensus 19 k~~~~~lgl~~gd~v~i~~~--~~~iii~p 46 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLV--DGKLIIEP 46 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEE--TTEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEE--CCEEEEEE
Confidence 47899999999999999874 66677643
No 15
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=23.90 E-value=1.4e+02 Score=27.30 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCeEEEEEEEcCCCC-------CcceeccCchhhhhccCCCCCCEEEE
Q 007837 393 GLPLKVQDSKGKEWIFQFRFWPNNN-------SRMYVLEGVTPCIQNMQLQAGDIVTF 443 (588)
Q Consensus 393 G~~L~v~D~~GK~W~FRfryw~Nn~-------SR~YVLeGWs~FVRsK~LkaGDtVvF 443 (588)
-+.|.+.|..|+.=.....-.|... .-.|+|+==..++.+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHHHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChHHHcCCCCCCEEeC
Confidence 3677888888877666543333211 22588873334457889999999875
No 16
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=23.27 E-value=1.1e+02 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=25.9
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEe
Q 007837 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL 446 (588)
Q Consensus 394 ~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~LkaGDtVvF~R~ 446 (588)
..+.+.|.+| ..+++.| .+.+.. .|++||+|.| +.
T Consensus 40 ~~~~l~DeTG---~I~~tlW-------------~~~~~~-~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW-------------NELADF-EVKKGDIAEV-SG 74 (97)
T ss_dssp EEEEEEETTE---EEEEEEE-------------GGGGGC-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEE-------------CCcccc-ccCCCCEEEE-EE
Confidence 4788999998 6777777 333333 8999999999 53
No 17
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein transport, membrane protein; NMR {Leishmania major} SCOP: b.134.1.1
Probab=22.52 E-value=62 Score=29.71 Aligned_cols=64 Identities=16% Similarity=0.352 Sum_probs=43.8
Q ss_pred CCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEe
Q 007837 388 ISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458 (588)
Q Consensus 388 L~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~LkaGDtVvF~R~epnGkL~IGvRR 458 (588)
++..+|+..++.|..++.|-|- |+...|.+.=--.|-..-.++++......+. ++|++.+.+--
T Consensus 35 F~~~nGlLfRIv~~~~~~WaFY------NDT~~y~mhV~~~F~~~S~v~alg~t~l~~~-~~G~~~a~vvV 98 (136)
T 2fe0_A 35 FEKDNGLLFRIVNKKKKQWAYY------NDTTQYEMHVLVTFNEDCDIKALGKTKLEQQ-ENGEWVASVVV 98 (136)
T ss_dssp SSSTTCSEEEEEETTTTEEEEE------ECCSSEEEEEEEEEESSCCEEECTTCEEEEC-TTSEEEEEEEE
T ss_pred ccCCCcEEEEEEecCCCEEEEE------eCCccEEEEEEEEECCCCceEECCceEEEEC-CCCCEEEEEEE
Confidence 3344699999999989999873 5666666654455666667777766666554 57877666553
No 18
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=20.34 E-value=95 Score=25.18 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred eEEEEeCCCCeEEEEEEEcCCCCCcceecc-CchhhhhccCCCCCCEEEEE
Q 007837 395 PLKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFS 444 (588)
Q Consensus 395 ~L~v~D~~GK~W~FRfryw~Nn~SR~YVLe-GWs~FVRsK~LkaGDtVvF~ 444 (588)
.+.+....|..|-|....-+ .....++.. -...-+...+|++||.|+=.
T Consensus 4 ~v~l~~~~~~~~G~~l~~~~-~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 53 (106)
T 3ngh_A 4 ESKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKAGLLDGDRVLRI 53 (106)
T ss_dssp EEEEECCTTCCCCCEEECCT-TCCSCEEECCCTTSHHHHTTCCTTCEEEEE
T ss_pred EEEEEeCCCCeeCEEEEEEe-CCCCEEEEEeCCCCHHHHcCCCCCCEEEEE
Confidence 34555556677777766542 223455554 34455667789999998744
Done!