Query 007838
Match_columns 588
No_of_seqs 439 out of 3893
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 16:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 100.0 1.2E-27 2.5E-32 241.5 34.5 312 166-482 2-318 (319)
2 PLN00113 leucine-rich repeat r 100.0 7.6E-31 1.6E-35 303.0 11.4 370 156-574 182-585 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.5E-30 3.2E-35 300.6 13.4 365 156-574 87-466 (968)
4 cd00116 LRR_RI Leucine-rich re 100.0 1.4E-27 3.1E-32 240.8 33.4 288 223-514 3-293 (319)
5 KOG4194 Membrane glycoprotein 100.0 5.4E-31 1.2E-35 260.9 0.3 360 163-582 79-438 (873)
6 KOG1909 Ran GTPase-activating 100.0 9.8E-27 2.1E-31 218.5 21.5 347 148-514 16-372 (382)
7 KOG4194 Membrane glycoprotein 99.9 9.7E-30 2.1E-34 252.1 -1.9 350 156-569 96-448 (873)
8 KOG1909 Ran GTPase-activating 99.9 3.9E-25 8.5E-30 207.8 20.5 346 210-580 22-377 (382)
9 KOG0444 Cytoskeletal regulator 99.9 2.1E-27 4.6E-32 237.0 -6.0 325 182-571 47-373 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 5.4E-26 1.2E-30 227.1 -4.2 346 161-572 6-351 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 7.7E-25 1.7E-29 208.6 -9.6 100 466-574 430-542 (565)
12 KOG4308 LRR-containing protein 99.8 5.2E-21 1.1E-25 197.5 9.6 415 153-574 43-474 (478)
13 KOG0618 Serine/threonine phosp 99.8 8.8E-22 1.9E-26 206.0 1.1 232 329-584 218-500 (1081)
14 KOG0618 Serine/threonine phosp 99.8 2.9E-22 6.3E-27 209.6 -6.1 156 389-577 361-517 (1081)
15 KOG0472 Leucine-rich repeat pr 99.8 1.7E-22 3.7E-27 192.6 -8.7 366 154-574 60-472 (565)
16 KOG4308 LRR-containing protein 99.8 1.4E-19 3.1E-24 186.9 11.4 366 148-514 101-475 (478)
17 COG5238 RNA1 Ran GTPase-activa 99.8 9.3E-18 2E-22 152.7 16.0 260 150-428 18-285 (388)
18 COG5238 RNA1 Ran GTPase-activa 99.8 1.1E-16 2.5E-21 145.6 21.3 297 207-555 19-325 (388)
19 KOG4341 F-box protein containi 99.7 1.4E-16 3E-21 153.6 11.2 323 153-508 128-461 (483)
20 PLN03210 Resistant to P. syrin 99.7 9E-17 2E-21 186.6 8.2 286 218-570 611-903 (1153)
21 PRK15387 E3 ubiquitin-protein 99.7 1.3E-16 2.9E-21 172.5 8.2 260 190-548 201-460 (788)
22 PRK15387 E3 ubiquitin-protein 99.6 1.5E-16 3.3E-21 172.0 7.5 260 162-514 201-460 (788)
23 KOG4341 F-box protein containi 99.6 1.6E-15 3.4E-20 146.5 9.6 303 148-479 150-460 (483)
24 PLN03210 Resistant to P. syrin 99.6 2.2E-15 4.7E-20 175.2 8.2 290 189-544 610-904 (1153)
25 PRK15370 E3 ubiquitin-protein 99.6 2.8E-15 6E-20 163.3 7.0 250 219-546 179-428 (754)
26 KOG4237 Extracellular matrix p 99.6 9.8E-16 2.1E-20 146.7 2.5 382 151-581 55-485 (498)
27 PRK15370 E3 ubiquitin-protein 99.5 7E-15 1.5E-19 160.2 8.4 202 163-428 179-380 (754)
28 KOG2120 SCF ubiquitin ligase, 99.5 1.9E-14 4.1E-19 133.0 8.6 187 360-570 186-373 (419)
29 KOG2120 SCF ubiquitin ligase, 99.5 3.9E-13 8.4E-18 124.4 11.0 194 247-465 186-384 (419)
30 KOG4237 Extracellular matrix p 99.4 4E-14 8.8E-19 135.7 -1.4 283 246-573 67-359 (498)
31 KOG3207 Beta-tubulin folding c 99.4 1.6E-13 3.5E-18 133.5 1.2 85 280-371 99-184 (505)
32 KOG3207 Beta-tubulin folding c 99.3 7.9E-14 1.7E-18 135.6 -1.2 235 146-402 105-341 (505)
33 KOG0617 Ras suppressor protein 99.2 1.6E-13 3.6E-18 116.8 -6.9 155 360-548 34-188 (264)
34 KOG0617 Ras suppressor protein 99.1 1.1E-12 2.5E-17 111.7 -7.2 159 385-577 31-190 (264)
35 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.5E-15 101.9 5.2 83 471-567 64-147 (175)
36 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 108.5 2.7 235 266-547 174-413 (490)
37 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-10 2.7E-15 103.9 1.7 127 331-478 20-147 (175)
38 KOG1259 Nischarin, modulator o 98.9 2.9E-10 6.3E-15 105.7 0.2 128 361-514 286-414 (490)
39 KOG1859 Leucine-rich repeat pr 98.8 2.5E-09 5.5E-14 110.6 3.1 128 416-573 165-292 (1096)
40 COG4886 Leucine-rich repeat (L 98.8 3.6E-09 7.9E-14 109.9 4.0 196 305-548 96-292 (394)
41 KOG1947 Leucine rich repeat pr 98.7 2E-07 4.4E-12 99.6 15.2 140 300-453 186-331 (482)
42 KOG2982 Uncharacterized conser 98.7 1.3E-08 2.9E-13 94.8 4.9 212 331-575 46-264 (418)
43 KOG1947 Leucine rich repeat pr 98.6 4.4E-07 9.5E-12 97.0 15.1 114 245-369 187-305 (482)
44 KOG3665 ZYG-1-like serine/thre 98.6 7.7E-07 1.7E-11 96.9 16.8 159 301-477 121-281 (699)
45 COG4886 Leucine-rich repeat (L 98.6 1.7E-08 3.7E-13 104.8 3.1 196 277-514 96-292 (394)
46 KOG0531 Protein phosphatase 1, 98.6 2.4E-09 5.1E-14 111.5 -4.1 105 218-343 49-153 (414)
47 KOG2982 Uncharacterized conser 98.6 9.1E-08 2E-12 89.3 6.0 213 163-402 46-264 (418)
48 KOG0531 Protein phosphatase 1, 98.5 2.3E-08 5E-13 104.2 -1.2 242 274-573 49-290 (414)
49 KOG1859 Leucine-rich repeat pr 98.4 1.3E-07 2.9E-12 98.2 3.4 127 389-546 166-292 (1096)
50 KOG3665 ZYG-1-like serine/thre 98.4 1.2E-06 2.6E-11 95.4 10.8 167 329-514 121-290 (699)
51 PLN03150 hypothetical protein; 98.3 3.3E-07 7.1E-12 100.1 4.1 107 445-571 420-526 (623)
52 PF13855 LRR_8: Leucine rich r 98.3 6.5E-08 1.4E-12 70.8 -1.0 42 527-571 19-60 (61)
53 PF13855 LRR_8: Leucine rich r 98.3 1E-07 2.2E-12 69.8 -0.1 61 471-545 1-61 (61)
54 KOG0532 Leucine-rich repeat (L 98.3 1.3E-08 2.8E-13 102.9 -6.5 195 330-571 75-271 (722)
55 KOG0532 Leucine-rich repeat (L 98.3 1.8E-08 3.9E-13 101.8 -6.0 126 332-481 145-270 (722)
56 KOG4658 Apoptotic ATPase [Sign 98.1 5.2E-07 1.1E-11 100.8 0.4 108 217-341 544-653 (889)
57 PLN03150 hypothetical protein; 98.1 2.4E-06 5.1E-11 93.4 4.9 91 389-491 420-510 (623)
58 KOG4579 Leucine-rich repeat (L 98.1 1.9E-06 4.1E-11 71.5 2.7 141 415-581 27-167 (177)
59 KOG4579 Leucine-rich repeat (L 98.0 4E-06 8.7E-11 69.6 3.6 117 443-580 27-143 (177)
60 KOG4658 Apoptotic ATPase [Sign 97.9 1.6E-06 3.5E-11 97.0 -0.6 131 160-309 543-675 (889)
61 PF12799 LRR_4: Leucine Rich r 97.7 9.9E-06 2.2E-10 54.3 0.5 37 500-547 2-38 (44)
62 KOG4242 Predicted myosin-I-bin 97.7 4.7E-05 1E-09 76.0 5.1 308 189-514 134-455 (553)
63 KOG1644 U2-associated snRNP A' 97.4 2.4E-05 5.1E-10 69.6 -0.6 134 389-547 21-154 (233)
64 KOG2123 Uncharacterized conser 97.4 6.1E-05 1.3E-09 70.2 1.1 105 329-449 18-123 (388)
65 PF12799 LRR_4: Leucine Rich r 97.4 0.00016 3.5E-09 48.4 2.8 37 360-401 2-38 (44)
66 KOG3864 Uncharacterized conser 97.3 0.00025 5.5E-09 63.3 4.5 83 360-453 102-186 (221)
67 KOG2123 Uncharacterized conser 97.3 0.00022 4.8E-09 66.6 4.0 102 443-566 19-123 (388)
68 KOG4242 Predicted myosin-I-bin 97.1 0.00013 2.8E-09 72.9 0.4 335 162-514 135-483 (553)
69 KOG1644 U2-associated snRNP A' 97.0 0.00048 1E-08 61.5 2.5 129 417-570 21-150 (233)
70 PRK15386 type III secretion pr 96.9 0.0012 2.5E-08 66.8 5.3 77 382-483 47-124 (426)
71 KOG3864 Uncharacterized conser 96.8 0.00065 1.4E-08 60.7 1.9 82 416-508 102-185 (221)
72 KOG3735 Tropomodulin and leiom 96.6 0.0059 1.3E-07 58.9 7.2 126 353-478 192-320 (353)
73 KOG2739 Leucine-rich acidic nu 96.6 0.00089 1.9E-08 62.4 1.3 60 498-567 90-150 (260)
74 KOG2739 Leucine-rich acidic nu 96.5 0.00075 1.6E-08 62.9 0.6 14 415-428 91-104 (260)
75 KOG3735 Tropomodulin and leiom 96.3 0.025 5.5E-07 54.6 9.2 92 330-422 198-290 (353)
76 smart00368 LRR_RI Leucine rich 95.9 0.013 2.9E-07 34.8 3.5 24 443-466 2-25 (28)
77 PF13516 LRR_6: Leucine Rich r 95.9 0.0015 3.2E-08 37.3 -0.6 22 560-581 2-23 (24)
78 smart00368 LRR_RI Leucine rich 95.8 0.016 3.5E-07 34.4 3.5 24 388-411 3-26 (28)
79 PF13516 LRR_6: Leucine Rich r 95.4 0.01 2.2E-07 33.8 1.8 18 444-461 3-20 (24)
80 PRK15386 type III secretion pr 94.7 0.04 8.7E-07 56.0 4.6 132 407-570 44-187 (426)
81 PF00560 LRR_1: Leucine Rich R 92.6 0.067 1.5E-06 29.6 1.2 13 500-512 1-13 (22)
82 smart00367 LRR_CC Leucine-rich 92.1 0.18 3.8E-06 29.3 2.7 17 388-404 3-20 (26)
83 smart00367 LRR_CC Leucine-rich 91.8 0.18 3.8E-06 29.3 2.4 21 415-435 2-23 (26)
84 PF13504 LRR_7: Leucine rich r 88.7 0.27 5.9E-06 25.2 1.2 14 561-574 2-15 (17)
85 KOG3763 mRNA export factor TAP 80.6 3.5 7.6E-05 43.2 5.9 67 356-428 215-283 (585)
86 KOG3763 mRNA export factor TAP 78.7 3.2 7E-05 43.4 4.9 37 190-228 218-254 (585)
87 smart00369 LRR_TYP Leucine-ric 77.3 1.6 3.5E-05 25.1 1.4 21 560-580 2-22 (26)
88 smart00370 LRR Leucine-rich re 77.3 1.6 3.5E-05 25.1 1.4 21 560-580 2-22 (26)
89 PF13306 LRR_5: Leucine rich r 67.6 1.4 3E-05 37.1 -0.6 105 439-569 8-112 (129)
90 PF13306 LRR_5: Leucine rich r 67.2 0.51 1.1E-05 39.9 -3.5 59 384-452 9-67 (129)
91 KOG0473 Leucine-rich repeat pr 66.7 0.42 9E-06 44.2 -4.1 83 443-546 42-124 (326)
92 smart00365 LRR_SD22 Leucine-ri 63.9 4.6 0.0001 23.4 1.3 16 560-575 2-17 (26)
93 KOG0473 Leucine-rich repeat pr 56.9 0.4 8.7E-06 44.3 -6.0 82 471-572 42-123 (326)
94 smart00364 LRR_BAC Leucine-ric 50.4 9.2 0.0002 22.1 1.0 15 560-574 2-16 (26)
95 PF03382 DUF285: Mycoplasma pr 33.8 28 0.0006 29.0 1.9 13 463-475 53-65 (120)
96 PF03382 DUF285: Mycoplasma pr 20.8 72 0.0016 26.5 2.1 95 436-546 4-98 (120)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=1.2e-27 Score=241.49 Aligned_cols=312 Identities=33% Similarity=0.448 Sum_probs=229.6
Q ss_pred EEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCC--hHHHHHHHHHHh
Q 007838 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILV 243 (588)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~ 243 (588)
.|+|.++.+.+..+..+...+ .+|++|++++|.+++.+...+...+...++|++|+++++.++ ......++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l---~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKL---LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHH---hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 467777777755555444443 569999999999988888888888888888999999988877 566666777777
Q ss_pred hCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhC-CCcceeecCCCCCChhHHHHH
Q 007838 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL 322 (588)
Q Consensus 244 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~~~~~~~~~~~l 322 (588)
.+++|++|++++|.+.......+...... ++|++|++++|.+++.+...+...+..+ ++|++|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 78889999998888876666666665444 6688888888888877777777777776 788888888888776666666
Q ss_pred HHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChH
Q 007838 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (588)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 402 (588)
...+..++.|++|++++|.+++.++..+...+.. .++|++|++++|.+++.+...+...+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 6667777778888888887777766666655543 357777777777777777766777777777777777777777776
Q ss_pred HHHHHHHHHhh-CCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhC-CCccEEEccc
Q 007838 403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGW 480 (588)
Q Consensus 403 ~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~ 480 (588)
++..+...+.. .++|++|++++|.+++.+...+...+..+++|+.+++++|.+++++...+...++.. +.++.|++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 66666655432 467777777777777766667777777667777777777777777777777666655 6667776665
Q ss_pred CC
Q 007838 481 CQ 482 (588)
Q Consensus 481 n~ 482 (588)
+.
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 54
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=7.6e-31 Score=302.99 Aligned_cols=370 Identities=18% Similarity=0.232 Sum_probs=199.9
Q ss_pred HHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 007838 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (588)
Q Consensus 156 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 235 (588)
..+..+++|+.|+|++|.+... ++..+..+++|++|++++|.++.. +...+..+++|++|++++|.+...
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-- 251 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLTGP-- 251 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceeccc--
Confidence 3456778888888888877644 455566678888888888877643 333455667788888888876543
Q ss_pred HHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCC
Q 007838 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (588)
Q Consensus 236 ~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 315 (588)
++..+..+++|++|++++|.++.... ..+..+++|++|++++|.+. ..++..+.++++|+.|++++|.++
T Consensus 252 --~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 252 --IPSSLGNLKNLQYLFLYQNKLSGPIP----PSIFSLQKLISLDLSDNSLS----GEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred --cChhHhCCCCCCEEECcCCeeeccCc----hhHhhccCcCEEECcCCeec----cCCChhHcCCCCCcEEECCCCccC
Confidence 34555666778888887777665422 22334466777777777665 234455556667777777766654
Q ss_pred hhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHH------------------
Q 007838 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF------------------ 377 (588)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~------------------ 377 (588)
... +..+..+++|+.|++++|.+.+.....+ ..+++|+.|++++|.++.....
T Consensus 322 ~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 322 GKI----PVALTSLPRLQVLQLWSNKFSGEIPKNL-----GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred CcC----ChhHhcCCCCCEEECcCCCCcCcCChHH-----hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 322 2334456666666666666554322222 2334555555555554432000
Q ss_pred --HHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCC
Q 007838 378 --HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (588)
Q Consensus 378 --~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (588)
.++..+..+++|+.|++++|.++.. ++..+..++.|+.|++++|.+++. +...+..+++|+.|++++|.+
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGE----LPSEFTKLPLVYFLDISNNNLQGR----INSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeE----CChhHhcCCCCCEEECcCCcccCc----cChhhccCCCCcEEECcCcee
Confidence 0233344445555555555544432 223334445555555555554432 111222334555555555544
Q ss_pred ChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCC-------------CCc
Q 007838 456 GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC-------------NGL 522 (588)
Q Consensus 456 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~-------------~~l 522 (588)
....+..+ ..++|+.|++++|+++...+..+..+ ++|++|+|++|.+.+.+|... +.+
T Consensus 465 ~~~~p~~~-----~~~~L~~L~ls~n~l~~~~~~~~~~l----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 465 FGGLPDSF-----GSKRLENLDLSRNQFSGAVPRKLGSL----SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred eeecCccc-----ccccceEEECcCCccCCccChhhhhh----hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 32211111 12455555666555555444444443 556666666665555532110 111
Q ss_pred h-hhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 523 S-FFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 523 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
. .+|..+..+++|+.|+|++|++++. ++..+... ++|+.||+++|++..
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l-~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQLSGE--IPKNLGNV-ESLVQVNISHNHLHG 585 (968)
T ss_pred cccCChhHhCcccCCEEECCCCccccc--CChhHhcC-cccCEEeccCCccee
Confidence 1 1455666666666666666666654 33334433 566666666666653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.5e-30 Score=300.57 Aligned_cols=365 Identities=21% Similarity=0.202 Sum_probs=209.7
Q ss_pred HHHHHcCCccEEEccCCCCCHHHHHHHHHH-hhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHH
Q 007838 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAES-LGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234 (588)
Q Consensus 156 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~-l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 234 (588)
..+..+++|+.|+|++|.+... ++.. +..+++|++|+|++|.++..-. ...+++|++|++++|.+...
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~----ip~~~~~~l~~L~~L~Ls~n~l~~~~p------~~~l~~L~~L~Ls~n~~~~~- 155 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGP----IPDDIFTTSSSLRYLNLSNNNFTGSIP------RGSIPNLETLDLSNNMLSGE- 155 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCc----CChHHhccCCCCCEEECcCCccccccC------ccccCCCCEEECcCCccccc-
Confidence 3455778888888888877532 2222 2256788888888887653211 12346677777777776543
Q ss_pred HHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCC
Q 007838 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYG 314 (588)
Q Consensus 235 ~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 314 (588)
++..+..+++|++|++++|.+.... +..+.++++|++|++++|.+. ..++..+.++++|+.|++++|.+
T Consensus 156 ---~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 156 ---IPNDIGSFSSLKVLDLGGNVLVGKI----PNSLTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ---CChHHhcCCCCCEEECccCcccccC----ChhhhhCcCCCeeeccCCCCc----CcCChHHcCcCCccEEECcCCcc
Confidence 3444555677777777777665432 233344567777777777665 33455566667777777777765
Q ss_pred ChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEc
Q 007838 315 GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394 (588)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 394 (588)
+.. ++..+..+++|++|++++|.+.+.....+ ..+++|+.|++++|.+.+. ++..+..+++|++|++
T Consensus 225 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 225 SGE----IPYEIGGLTSLNHLDLVYNNLTGPIPSSL-----GNLKNLQYLFLYQNKLSGP----IPPSIFSLQKLISLDL 291 (968)
T ss_pred CCc----CChhHhcCCCCCEEECcCceeccccChhH-----hCCCCCCEEECcCCeeecc----CchhHhhccCcCEEEC
Confidence 432 23335566677777777776654322223 2455667777766666543 4445556666666666
Q ss_pred cCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCcc
Q 007838 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474 (588)
Q Consensus 395 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 474 (588)
++|.+... ++..+..+++|++|++++|.++.. ++..+..+++|+.|++++|.+....+ ..+..+++|+
T Consensus 292 s~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~~~~L~ 359 (968)
T PLN00113 292 SDNSLSGE----IPELVIQLQNLEILHLFSNNFTGK----IPVALTSLPRLQVLQLWSNKFSGEIP----KNLGKHNNLT 359 (968)
T ss_pred cCCeeccC----CChhHcCCCCCcEEECCCCccCCc----CChhHhcCCCCCEEECcCCCCcCcCC----hHHhCCCCCc
Confidence 66666543 444455556666666666666543 22334444666666666666554322 2233445666
Q ss_pred EEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccC---CCCch-----------hhhhhHhhhhcccchhh
Q 007838 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSG---CNGLS-----------FFHSAIYSLKHMLFYSL 540 (588)
Q Consensus 475 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~---~~~l~-----------~~~~~~~~l~~L~~L~L 540 (588)
.|++++|+++...+..+..+ ++|+.|++++|.+.+.+|.. |++|+ .+|..+..++.|+.|++
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~----~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSS----GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred EEECCCCeeEeeCChhHhCc----CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 66666666554433333332 45555555555555442211 11110 14566777777777777
Q ss_pred hhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 541 CINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 541 s~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
++|.+++.. +..+..+ ++|+.|++++|++..
T Consensus 436 s~N~l~~~~--~~~~~~l-~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 436 SNNNLQGRI--NSRKWDM-PSLQMLSLARNKFFG 466 (968)
T ss_pred cCCcccCcc--ChhhccC-CCCcEEECcCceeee
Confidence 777777642 2223333 677777777777654
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=1.4e-27 Score=240.80 Aligned_cols=288 Identities=31% Similarity=0.428 Sum_probs=194.6
Q ss_pred EEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCC--hhhHHHHHHHHhh
Q 007838 223 LNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID--YSGFTSLAEALLE 300 (588)
Q Consensus 223 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~ 300 (588)
|+|.++.+++.... ..+.....|++|++++|.+++.+...+...+...+.+++++++++.+. ..++..++..+..
T Consensus 3 l~L~~~~l~~~~~~---~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKGELLKTERAT---ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred cccccCcccccchH---HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 45555555533322 222223446666666666666666666666666666666666666665 4555566666666
Q ss_pred CCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHH
Q 007838 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (588)
Q Consensus 301 ~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (588)
+++|++|++++|.+.......+...... ++|++|++++|.+++.+...+...+....++|+.|++++|.++..+...+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 7777777777776654444444433333 567777777777777666666666554336778888887777766666667
Q ss_pred HHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHH
Q 007838 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (588)
Q Consensus 381 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (588)
..+..+++|++|++++|.+++.++..+...+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.++
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 77777777888888888777777777777776677788888888877777777777777777778888888887777666
Q ss_pred HHHHHHHhh-CCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 461 KALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 461 ~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
..++..+.. .+.|++|++++|.+++.+...+.+.+..+++|+++++++|.++++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 666655432 467788888888777777777777777777788888888887776
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=5.4e-31 Score=260.92 Aligned_cols=360 Identities=19% Similarity=0.162 Sum_probs=228.0
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007838 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (588)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 242 (588)
.-+.||+++|.+.+.++..+ ...++|+++++.+|.++. ++.......+|+.|+|.+|.|.....+.+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f----~nl~nLq~v~l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se~L~--- 146 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFF----YNLPNLQEVNLNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSEELS--- 146 (873)
T ss_pred ceeeeeccccccccCcHHHH----hcCCcceeeeeccchhhh-----cccccccccceeEEeeeccccccccHHHHH---
Confidence 34567888877766544333 334778888887777652 333333344677888888777665433333
Q ss_pred hhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHH
Q 007838 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (588)
Q Consensus 243 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l 322 (588)
..+.|++|+|+.|.|+......++. ..++++|+|++|.|++.+...+ ..+.+|-.|.|+.|+++....
T Consensus 147 -~l~alrslDLSrN~is~i~~~sfp~----~~ni~~L~La~N~It~l~~~~F----~~lnsL~tlkLsrNrittLp~--- 214 (873)
T KOG4194|consen 147 -ALPALRSLDLSRNLISEIPKPSFPA----KVNIKKLNLASNRITTLETGHF----DSLNSLLTLKLSRNRITTLPQ--- 214 (873)
T ss_pred -hHhhhhhhhhhhchhhcccCCCCCC----CCCceEEeeccccccccccccc----cccchheeeecccCcccccCH---
Confidence 3377778888777776543322222 2567788888887765443333 345677777788777766554
Q ss_pred HHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChH
Q 007838 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (588)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 402 (588)
..+.+++.|+.|+|..|.|.......| ..++.|+.|.+..|.|..-. -.++-.+.++++|+|+.|++...
T Consensus 215 -r~Fk~L~~L~~LdLnrN~irive~ltF-----qgL~Sl~nlklqrN~I~kL~----DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 215 -RSFKRLPKLESLDLNRNRIRIVEGLTF-----QGLPSLQNLKLQRNDISKLD----DGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred -HHhhhcchhhhhhccccceeeehhhhh-----cCchhhhhhhhhhcCccccc----Ccceeeecccceeecccchhhhh
Confidence 334567777888887777654433333 45667777777777665420 12234567778888887777654
Q ss_pred HHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCC
Q 007838 403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (588)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (588)
. ...+..+..|+.|+|++|.|....+.. +..+++|++|+|++|.|+......+... ..|++|+|+.|.
T Consensus 285 n----~g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 285 N----EGWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNS 352 (873)
T ss_pred h----cccccccchhhhhccchhhhheeecch----hhhcccceeEeccccccccCChhHHHHH----HHhhhhcccccc
Confidence 2 223445677788888887766543322 3345778888888887766544444333 567788888887
Q ss_pred CChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhcc
Q 007838 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEAL 562 (588)
Q Consensus 483 i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L 562 (588)
|+......|..+ .+|++|||+.|.++..| +.-...|.+|++|+.|+|.||+|+.. ...++... +.|
T Consensus 353 i~~l~e~af~~l----ssL~~LdLr~N~ls~~I-------EDaa~~f~gl~~LrkL~l~gNqlk~I--~krAfsgl-~~L 418 (873)
T KOG4194|consen 353 IDHLAEGAFVGL----SSLHKLDLRSNELSWCI-------EDAAVAFNGLPSLRKLRLTGNQLKSI--PKRAFSGL-EAL 418 (873)
T ss_pred hHHHHhhHHHHh----hhhhhhcCcCCeEEEEE-------ecchhhhccchhhhheeecCceeeec--chhhhccC-ccc
Confidence 777666666665 77888888888776541 12345567788888888888887764 34455555 678
Q ss_pred ceeeccCCccccCccccccc
Q 007838 563 TSIDLAFNEIRVSNIIFFPF 582 (588)
Q Consensus 563 ~~L~ls~N~i~~~~~~~l~~ 582 (588)
++|||.+|.|-.+-+++|.+
T Consensus 419 E~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred ceecCCCCcceeeccccccc
Confidence 88888888777666665543
No 6
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.95 E-value=9.8e-27 Score=218.50 Aligned_cols=347 Identities=23% Similarity=0.333 Sum_probs=287.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCC---C---HHHHHHHHHHHhcCCCcc
Q 007838 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGI---T---AAGIKAFDGVLQSNIALK 221 (588)
Q Consensus 148 ~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i---~---~~~~~~l~~~l~~~~~L~ 221 (588)
.+..+.+.+.+.....+++|+|++|.|+....+.++..+...+.|+..++++--. . ...+..|...+..++.|+
T Consensus 16 ~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 16 EEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 3445666777778899999999999999999999999999999999999987532 1 234567778888888999
Q ss_pred EEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhC
Q 007838 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN 301 (588)
Q Consensus 222 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 301 (588)
+|+||+|.++..++..+...+.++..|++|.|.+|.+...+...++..+. .|. . .+.....
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~------~l~--~-----------~kk~~~~ 156 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALF------ELA--V-----------NKKAASK 156 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHH------HHH--H-----------HhccCCC
Confidence 99999999999999999999999999999999999999888888887743 222 1 1222345
Q ss_pred CCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHH
Q 007838 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (588)
Q Consensus 302 ~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (588)
+.|+.+...+|++.+.+...+...+...+.|+.+.++.|.|..+|+..+..++. .+++|+.|||..|-++..|...++.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHH
Confidence 788999999998888888888898999999999999999999999877877777 5679999999999999999999999
Q ss_pred HHhcCCCCcEEEccCCCCChHHHHHHHHHHhh-CCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCC--ChH
Q 007838 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI--GAD 458 (588)
Q Consensus 382 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~ 458 (588)
.++.+++|++|++++|.+.+.|...+.+++.. .+.|++|.+.+|.|+.++...++..+...|.|+.|+|++|.+ .++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de 315 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDE 315 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccch
Confidence 99999999999999999999999999999875 689999999999999999988988888889999999999999 666
Q ss_pred HHHHHHHHHhh-CCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 459 GAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 459 ~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
++..+...+.- ...+...+.+.+.+...+......-......-+.++..++.+.++
T Consensus 316 ~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e 372 (382)
T KOG1909|consen 316 GIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEE 372 (382)
T ss_pred hHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchh
Confidence 66666655421 234556667777787777777776666667778888888888776
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=9.7e-30 Score=252.07 Aligned_cols=350 Identities=20% Similarity=0.227 Sum_probs=240.9
Q ss_pred HHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 007838 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (588)
Q Consensus 156 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 235 (588)
+++.++++|+++.|..|.++. ++.......+|+.|+|.+|.|+...-+.+... +.|++||||.|.|+....
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l----~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSEELSAL----PALRSLDLSRNLISEIPK 166 (873)
T ss_pred HHHhcCCcceeeeeccchhhh-----cccccccccceeEEeeeccccccccHHHHHhH----hhhhhhhhhhchhhcccC
Confidence 455688999999999988765 45444445689999999999887666555444 449999999998875432
Q ss_pred HHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCC
Q 007838 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (588)
Q Consensus 236 ~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 315 (588)
..+.+..+|++|+|++|.|+..+..++..+ .+|..|.|+.|+|+. .-...+.++++|+.|+|..|++.
T Consensus 167 ----~sfp~~~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNritt----Lp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 167 ----PSFPAKVNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRITT----LPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred ----CCCCCCCCceEEeecccccccccccccccc----chheeeecccCcccc----cCHHHhhhcchhhhhhcccccee
Confidence 222334789999999999998777666655 579999999998852 22334445899999999998775
Q ss_pred hhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcc
Q 007838 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (588)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 395 (588)
-... -.+.++++|+.|.|..|.|.. +-++.+..+.++++|+|+.|.+... -..++-++..|+.|+++
T Consensus 235 ive~----ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 235 IVEG----LTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQLDLS 301 (873)
T ss_pred eehh----hhhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhhh----hcccccccchhhhhccc
Confidence 4322 225678888888888887754 2222334566788888888877764 22445677788888888
Q ss_pred CCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccE
Q 007838 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (588)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (588)
+|.|... -.+.+..+++|++|+|+.|+|+.-.-+.+... ..|++|+|+.|.|+...-..+ ..+++|++
T Consensus 302 ~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af----~~lssL~~ 369 (873)
T KOG4194|consen 302 YNAIQRI----HIDSWSFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAF----VGLSSLHK 369 (873)
T ss_pred hhhhhee----ecchhhhcccceeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHH----HHhhhhhh
Confidence 8876653 23345556788888888888776554455444 778888888887765433333 23367888
Q ss_pred EEcccCCCCh---hHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHH
Q 007838 476 LKLGWCQIGA---SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLA 552 (588)
Q Consensus 476 L~L~~n~i~~---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~ 552 (588)
|||++|.++. .+...+..+ +.|+.|+|.||++... -..+|.++..|++|||.+|-|-... +
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl----~~LrkL~l~gNqlk~I----------~krAfsgl~~LE~LdL~~NaiaSIq--~ 433 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGL----PSLRKLRLTGNQLKSI----------PKRAFSGLEALEHLDLGDNAIASIQ--P 433 (873)
T ss_pred hcCcCCeEEEEEecchhhhccc----hhhhheeecCceeeec----------chhhhccCcccceecCCCCcceeec--c
Confidence 8888887643 233334333 8888888888888766 4577888888888888888876653 3
Q ss_pred HHHHhhhhccceeeccC
Q 007838 553 QSFKVVNEALTSIDLAF 569 (588)
Q Consensus 553 ~~~~~~~~~L~~L~ls~ 569 (588)
+++..+ .|++|-+..
T Consensus 434 nAFe~m--~Lk~Lv~nS 448 (873)
T KOG4194|consen 434 NAFEPM--ELKELVMNS 448 (873)
T ss_pred cccccc--hhhhhhhcc
Confidence 445443 366666643
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.94 E-value=3.9e-25 Score=207.77 Aligned_cols=346 Identities=23% Similarity=0.271 Sum_probs=185.6
Q ss_pred HHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCC---h---hHHHHHHHHHhhCCCccEEEeec
Q 007838 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR---D---EGAKAIAELLKNNSILRVLELNN 283 (588)
Q Consensus 210 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~---~---~~~~~l~~~l~~~~~L~~L~Ls~ 283 (588)
+...+.....++.|+|++|.++.+..+.++..+.+.++|+..++++--.. + .....+...+..++.|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33333344444455555554444444444444444444444444332100 0 11222333344444555555555
Q ss_pred cCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceE
Q 007838 284 NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (588)
Q Consensus 284 n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 363 (588)
|-|+..++..+...+.++..|++|.|.+|.++..+...+..++..+. .+ . .....++|++
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~-----------k-k~~~~~~Lrv 161 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VN-----------K-KAASKPKLRV 161 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HH-----------h-ccCCCcceEE
Confidence 55555555555555555555555555555555444444333322110 00 0 0023346677
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCC
Q 007838 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443 (588)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 443 (588)
+..++|.+.+.|...++..+...+.|+.+.+..|.|...|+..+..++..|++|++|||.+|-++..+...++..++.++
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 77777766666666666666666777777777777766666666666666777777777777777666667777777667
Q ss_pred CcCEEECcCCCCChHHHHHHHHHHhh-CCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCc
Q 007838 444 VITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGL 522 (588)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 522 (588)
+|++|++++|.+.+.|...+.+.+.. .+.|+.|.+.+|.|+..+...++..+..-+.|..|+|++|.+... +..+
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~----de~i 317 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEK----DEGI 317 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccccc----chhH
Confidence 77777777777766666666666554 466777777777777766666666555566777777777777311 1111
Q ss_pred hhhhhhHh-hhhcccchhhhhccch--hHHHHHHHHHhhhhccceeeccCCccccCccccc
Q 007838 523 SFFHSAIY-SLKHMLFYSLCINYLQ--GAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFF 580 (588)
Q Consensus 523 ~~~~~~~~-~l~~L~~L~Ls~n~l~--~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l 580 (588)
..+...+. .=..+...+.+.+-+. |..-........ .+-+.+++.+|-|.+++.+.+
T Consensus 318 ~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~-~t~~e~~ed~e~ie~e~~ee~ 377 (382)
T KOG1909|consen 318 DEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKK-ETFKELNEDGEVIEEEGIEEL 377 (382)
T ss_pred HHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhc-CcchhhcccccccchhHHHHh
Confidence 11111110 0022333333444332 333333333322 566777777777777776544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.1e-27 Score=237.04 Aligned_cols=325 Identities=19% Similarity=0.251 Sum_probs=160.8
Q ss_pred HHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChh
Q 007838 182 LAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDE 261 (588)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~ 261 (588)
+++.++++.+|+.|.++.|+++ .+...+..++.|+.+.+..|++...| ++..+.++..|..|+|++|++.+
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsG---iP~diF~l~dLt~lDLShNqL~E- 117 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSG---IPTDIFRLKDLTILDLSHNQLRE- 117 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCC---CCchhcccccceeeecchhhhhh-
Confidence 4444444455555555555432 22233344444555555555444433 33444444555555555554433
Q ss_pred HHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHh-hCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCC
Q 007838 262 GAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL-ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340 (588)
Q Consensus 262 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (588)
.+..+..-+++.+|+|++|+| ..|+..+. ++.-|-.|+|+.|++. .++..+..+..|++|+|++|
T Consensus 118 ----vP~~LE~AKn~iVLNLS~N~I-----etIPn~lfinLtDLLfLDLS~NrLe-----~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 118 ----VPTNLEYAKNSIVLNLSYNNI-----ETIPNSLFINLTDLLFLDLSNNRLE-----MLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ----cchhhhhhcCcEEEEcccCcc-----ccCCchHHHhhHhHhhhccccchhh-----hcCHHHHHHhhhhhhhcCCC
Confidence 122222224455555555554 22332221 2444445555555432 22333344445555555555
Q ss_pred CCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEE
Q 007838 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420 (588)
Q Consensus 341 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 420 (588)
.+..-.++.+ ..++.|+.|.+++.+-+- ..++..+..+.+|..+|++.|++.. +++++.++++|+.|
T Consensus 184 PL~hfQLrQL-----PsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 184 PLNHFQLRQL-----PSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENNLPI-----VPECLYKLRNLRRL 250 (1255)
T ss_pred hhhHHHHhcC-----ccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccCCCc-----chHHHhhhhhhhee
Confidence 4444333333 133344444444432111 1133334444455555555555543 44444455555555
Q ss_pred EeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHH-HHHHHHhcCC
Q 007838 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE-FVADMLRYNN 499 (588)
Q Consensus 421 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~ 499 (588)
+|++|+|+.-.. ......+|++|+|+.|.++. +...+.++++|+.|.+.+|+++-.|+. .++++ .
T Consensus 251 NLS~N~iteL~~-----~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL----~ 316 (1255)
T KOG0444|consen 251 NLSGNKITELNM-----TEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL----I 316 (1255)
T ss_pred ccCcCceeeeec-----cHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccCCccchhhh----h
Confidence 555555543211 11122445555555555442 222333334555555555555443322 23333 4
Q ss_pred cccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCc
Q 007838 500 TISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNE 571 (588)
Q Consensus 500 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~ 571 (588)
+|+++...+|.+. -.|+++..|+.|+.|.|+.|++.. +++++..+ +.|+.||+.+|+
T Consensus 317 ~Levf~aanN~LE-----------lVPEglcRC~kL~kL~L~~NrLiT---LPeaIHlL-~~l~vLDlreNp 373 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-----------LVPEGLCRCVKLQKLKLDHNRLIT---LPEAIHLL-PDLKVLDLRENP 373 (1255)
T ss_pred hhHHHHhhccccc-----------cCchhhhhhHHHHHhcccccceee---chhhhhhc-CCcceeeccCCc
Confidence 5555555555544 458999999999999999998776 67777777 889999999885
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.4e-26 Score=227.07 Aligned_cols=346 Identities=18% Similarity=0.185 Sum_probs=268.0
Q ss_pred cCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007838 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (588)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 240 (588)
++.++-+|+++|.+.... ++.....++.++-|.|...++ ..+++.++.+.+|++|.+++|++... -.
T Consensus 6 LpFVrGvDfsgNDFsg~~---FP~~v~qMt~~~WLkLnrt~L-----~~vPeEL~~lqkLEHLs~~HN~L~~v-----hG 72 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDR---FPHDVEQMTQMTWLKLNRTKL-----EQVPEELSRLQKLEHLSMAHNQLISV-----HG 72 (1255)
T ss_pred cceeecccccCCcCCCCc---CchhHHHhhheeEEEechhhh-----hhChHHHHHHhhhhhhhhhhhhhHhh-----hh
Confidence 567788999999886332 556666678999999876654 56777888889999999999987543 34
Q ss_pred HHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHH
Q 007838 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (588)
Q Consensus 241 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~ 320 (588)
.+..++.|+.+.+.+|++...| ++.-+-++..|++|||++|++ ...+..+..-+++-.|+|++|+|......
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsG---iP~diF~l~dLt~lDLShNqL-----~EvP~~LE~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSG---IPTDIFRLKDLTILDLSHNQL-----REVPTNLEYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred hhccchhhHHHhhhccccccCC---CCchhcccccceeeecchhhh-----hhcchhhhhhcCcEEEEcccCccccCCch
Confidence 4566799999999999886654 233344558899999999998 66788888889999999999988665432
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCC
Q 007838 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (588)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 400 (588)
.+.++..|-.|||++|++..-... + ..+..|++|+|++|.+....+ ..+..+.+|+.|.+++.+-+
T Consensus 145 ----lfinLtDLLfLDLS~NrLe~LPPQ-~-----RRL~~LqtL~Ls~NPL~hfQL----rQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 145 ----LFINLTDLLFLDLSNNRLEMLPPQ-I-----RRLSMLQTLKLSNNPLNHFQL----RQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred ----HHHhhHhHhhhccccchhhhcCHH-H-----HHHhhhhhhhcCCChhhHHHH----hcCccchhhhhhhcccccch
Confidence 234677888999999987542211 1 133479999999998877533 23355677888888887544
Q ss_pred hHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEccc
Q 007838 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (588)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (588)
- ..++..+..+.+|..+|++.|++. .+++.+-..++|+.|+|++|.|+... .....+.+|++|+++.
T Consensus 211 l---~N~Ptsld~l~NL~dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 211 L---DNIPTSLDDLHNLRDVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSR 277 (1255)
T ss_pred h---hcCCCchhhhhhhhhccccccCCC-----cchHHHhhhhhhheeccCcCceeeee-----ccHHHHhhhhhhcccc
Confidence 3 236667777899999999999887 36667777799999999999998642 2334457899999999
Q ss_pred CCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhh
Q 007838 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNE 560 (588)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~ 560 (588)
|+++.. +.++.++ +.|+.|.+.+|+++-+ ++|.+++.+.+|+.+..++|++.- .++.+..+ .
T Consensus 278 NQLt~L-P~avcKL----~kL~kLy~n~NkL~Fe---------GiPSGIGKL~~Levf~aanN~LEl---VPEglcRC-~ 339 (1255)
T KOG0444|consen 278 NQLTVL-PDAVCKL----TKLTKLYANNNKLTFE---------GIPSGIGKLIQLEVFHAANNKLEL---VPEGLCRC-V 339 (1255)
T ss_pred chhccc-hHHHhhh----HHHHHHHhccCccccc---------CCccchhhhhhhHHHHhhcccccc---Cchhhhhh-H
Confidence 999876 4455555 9999999999999855 789999999999999999999864 56667666 8
Q ss_pred ccceeeccCCcc
Q 007838 561 ALTSIDLAFNEI 572 (588)
Q Consensus 561 ~L~~L~ls~N~i 572 (588)
.|+.|.|+.|.+
T Consensus 340 kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 340 KLQKLKLDHNRL 351 (1255)
T ss_pred HHHHhcccccce
Confidence 899999999976
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=7.7e-25 Score=208.56 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=75.9
Q ss_pred HHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccc---c---------cCCCCchhhh-hhHhhh
Q 007838 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEV---C---------SGCNGLSFFH-SAIYSL 532 (588)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~---~---------~~~~~l~~~~-~~~~~l 532 (588)
.+++.++|..|+|++|-+.+... .++.+ ..|+.|+++.|++.... | ..-+.+..++ +.+.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~-e~~~l----v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPE-EMGSL----VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred HHHhhhcceeeecccchhhhcch-hhhhh----hhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 45677899999999988777643 44444 56999999999886441 0 1125555555 459999
Q ss_pred hcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 533 KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 533 ~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
.+|+.|||.+|.+.. ++..++.+ ++|++|+|++|+|+.
T Consensus 505 ~nL~tLDL~nNdlq~---IPp~Lgnm-tnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQ---IPPILGNM-TNLRHLELDGNPFRQ 542 (565)
T ss_pred hhcceeccCCCchhh---CChhhccc-cceeEEEecCCccCC
Confidence 999999999999887 55556767 899999999999983
No 12
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.84 E-value=5.2e-21 Score=197.46 Aligned_cols=415 Identities=28% Similarity=0.365 Sum_probs=327.8
Q ss_pred HHHHHHHHcCCccEEEccCCCCCHHH---HHHHHHHhhc--CCC--ccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEc
Q 007838 153 TLNEFAKELRAFSSVDMSGRNFGDEG---LFFLAESLGY--NQT--AEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225 (588)
Q Consensus 153 ~l~~~l~~~~~L~~L~Ls~~~l~~~~---~~~l~~~l~~--~~~--L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~L 225 (588)
.+...+...+.+..+.+..+...+.. .......+.. ++. +..|.|.+|.+.+.+.+.+...+..+.+|..|++
T Consensus 43 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l 122 (478)
T KOG4308|consen 43 DLRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDL 122 (478)
T ss_pred HHHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhhc
Confidence 34444555566777777777665555 2222222222 222 8899999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHhhC-CCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhh----
Q 007838 226 SGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE---- 300 (588)
Q Consensus 226 s~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---- 300 (588)
++|.+++.+...+...+... +.++.|.+..|.++..+...+.+.+..+..++.++++.|.+...+...++..+..
T Consensus 123 ~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~ 202 (478)
T KOG4308|consen 123 SGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASP 202 (478)
T ss_pred ccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcc
Confidence 99999999999999998886 7899999999999999999999999889999999999999988888888888875
Q ss_pred CCCcceeecCCCCCChhHHHHHHHHhhcCCC-CCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHH
Q 007838 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (588)
Q Consensus 301 ~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (588)
..++++|++++|.++...+..+...+...+. +.+|++..|.+.+.++..+...+....+.+++++++.|.|++.+...+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 7899999999999999999988888888887 888999999999999999988887655789999999999999999999
Q ss_pred HHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCC-cCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 380 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
...+..++.+++|.++.|.+.+.++..+...+.....+..+.+.++ ..+..+...+.........+.....+++...++
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEE 362 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHH
Confidence 9999999999999999999999999999999988888888888865 444444555565555556666777888888888
Q ss_pred HHHHHHHHHhhCC-CccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccc
Q 007838 459 GAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLF 537 (588)
Q Consensus 459 ~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~ 537 (588)
+...+........ .+..+++..+.+...+...++.....+..+.+++++.|...++. -..+.+.......++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~------~~~l~~~~~~~~~~~~ 436 (478)
T KOG4308|consen 363 GLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEG------AEVLTEQLSRNGSLKA 436 (478)
T ss_pred HHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhh------HHHHHHhhhhcccchh
Confidence 8777776654443 47788888888988888888888888999999999999988871 1112222222226677
Q ss_pred hhhhhccch--hHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 538 YSLCINYLQ--GAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 538 L~Ls~n~l~--~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
+.++.|.++ +......... .++....+-+..|.|+.
T Consensus 437 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 437 LRLSRNPITALGTEELQRALA-LNPGILAIRLRGNVIGR 474 (478)
T ss_pred hhhccChhhhcchHHHHHHHh-cCCCcceeecccCcccc
Confidence 777777654 2222333332 22556666666666544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=8.8e-22 Score=205.98 Aligned_cols=232 Identities=22% Similarity=0.255 Sum_probs=148.9
Q ss_pred CCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHH---
Q 007838 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE--- 405 (588)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--- 405 (588)
.++|+.|+.+.|.+....... -..+|++++++.|+++. +++++..|.+|+.++..+|.+.....+
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p-------~p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~~lp~ri~~ 285 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHP-------VPLNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLVALPLRISR 285 (1081)
T ss_pred CcchheeeeccCcceeecccc-------ccccceeeecchhhhhc-----chHHHHhcccceEecccchhHHhhHHHHhh
Confidence 355666666666554221111 12368888888888777 678888888888888888876432111
Q ss_pred ---------------HHHHHHhhCCCccEEEeeCCcCCHHHHHHH--HHH-H------------------hcCCCcCEEE
Q 007838 406 ---------------KIADALKQNRTITTIDLGGNNIHSKGASAI--ARV-L------------------KDNSVITSLD 449 (588)
Q Consensus 406 ---------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~-l------------------~~~~~L~~L~ 449 (588)
.++..+.....|++|+|..|+|..-....+ ... + ..++.|+.|.
T Consensus 286 ~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 112222234678888888887653211111 111 0 0124577788
Q ss_pred CcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccc--ccC---------
Q 007838 450 LAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEV--CSG--------- 518 (588)
Q Consensus 450 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~--~~~--------- 518 (588)
+.+|.++|..+..+. ....|+.|+|++|++.......+.++ ..|++|+|+||++.... ...
T Consensus 366 lanN~Ltd~c~p~l~----~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLV----NFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HhcCcccccchhhhc----cccceeeeeecccccccCCHHHHhch----HHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 888888888665554 34789999999999888877777777 88999999999887552 111
Q ss_pred -CCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCccccccccc
Q 007838 519 -CNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFPFFS 584 (588)
Q Consensus 519 -~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~~~~ 584 (588)
-+.+..+| .+.+++.|+.+|+|.|+++... ++..... +.|++||+++|.=..-.-..|+.++
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~-l~~~~p~--p~LkyLdlSGN~~l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVT-LPEALPS--PNLKYLDLSGNTRLVFDHKTLKVLK 500 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccchhhhhh-hhhhCCC--cccceeeccCCcccccchhhhHHhh
Confidence 24555566 8888999999999999987642 3333322 6799999999874333334444443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=2.9e-22 Score=209.56 Aligned_cols=156 Identities=23% Similarity=0.283 Sum_probs=78.5
Q ss_pred CcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 389 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
|+.|++.+|.++|.. ...+....+|+.|+|++|++....... +..++.|++|+|+||+++. ++..+.
T Consensus 361 Lq~LylanN~Ltd~c----~p~l~~~~hLKVLhLsyNrL~~fpas~----~~kle~LeeL~LSGNkL~~-----Lp~tva 427 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSC----FPVLVNFKHLKVLHLSYNRLNSFPASK----LRKLEELEELNLSGNKLTT-----LPDTVA 427 (1081)
T ss_pred HHHHHHhcCcccccc----hhhhccccceeeeeecccccccCCHHH----HhchHHhHHHhcccchhhh-----hhHHHH
Confidence 444444445454442 222233345555555555444222111 1222445555555554443 222233
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhcc-chh
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY-LQG 547 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~-l~~ 547 (588)
.++.|++|...+|++.... .++.+ +.|+.+|++.|+++.. .++..... ++|++||++||. +.-
T Consensus 428 ~~~~L~tL~ahsN~l~~fP--e~~~l----~qL~~lDlS~N~L~~~---------~l~~~~p~-p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLSFP--ELAQL----PQLKVLDLSCNNLSEV---------TLPEALPS-PNLKYLDLSGNTRLVF 491 (1081)
T ss_pred hhhhhHHHhhcCCceeech--hhhhc----CcceEEecccchhhhh---------hhhhhCCC-cccceeeccCCccccc
Confidence 3345555555555544432 33333 7777788887777755 12222222 899999999998 322
Q ss_pred HHHHHHHHHhhhhccceeeccCCccccCcc
Q 007838 548 AKCLAQSFKVVNEALTSIDLAFNEIRVSNI 577 (588)
Q Consensus 548 ~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~ 577 (588)
--..++.+ ..+...++.-|+.+|..+
T Consensus 492 ---d~~~l~~l-~~l~~~~i~~~~~~d~~~ 517 (1081)
T KOG0618|consen 492 ---DHKTLKVL-KSLSQMDITLNNTPDGNV 517 (1081)
T ss_pred ---chhhhHHh-hhhhheecccCCCCcccc
Confidence 12234333 567777777776555444
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.7e-22 Score=192.63 Aligned_cols=366 Identities=21% Similarity=0.268 Sum_probs=180.0
Q ss_pred HHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007838 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 233 (588)
Q Consensus 154 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 233 (588)
+.+=++.+..++.|++.++.+.. ++..++....++.++.+.|++. .+...+....+|..++.+.|.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls-----~lp~~i~s~~~l~~l~~s~n~~~e- 128 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLS-----ELPEQIGSLISLVKLDCSSNELKE- 128 (565)
T ss_pred ccHhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHh-----hccHHHhhhhhhhhhhccccceee-
Confidence 33444566777777777776543 3334444455666666666543 233334444445556665554432
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCCCC-----------------------hhHHHHHHHHHhhCCCccEEEeeccCCChhh
Q 007838 234 GVKCLCDILVDNAGVERLQLSSVDLR-----------------------DEGAKAIAELLKNNSILRVLELNNNMIDYSG 290 (588)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~L~~~~l~-----------------------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 290 (588)
+.+.+..+..++.++..+|+++ ......+. + +.|++||...|.+
T Consensus 129 ----l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m----~~L~~ld~~~N~L---- 195 (565)
T KOG0472|consen 129 ----LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-M----KRLKHLDCNSNLL---- 195 (565)
T ss_pred ----cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-H----HHHHhcccchhhh----
Confidence 2233333344455555555443 33222222 1 3355555555544
Q ss_pred HHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCC
Q 007838 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370 (588)
Q Consensus 291 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 370 (588)
+.+|..++.+.+|+.|++..|++... + .+.+|..|++|+++.|+|.. +......+++.+..||+..|+
T Consensus 196 -~tlP~~lg~l~~L~~LyL~~Nki~~l-----P-ef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 196 -ETLPPELGGLESLELLYLRRNKIRFL-----P-EFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred -hcCChhhcchhhhHHHHhhhcccccC-----C-CCCccHHHHHHHhcccHHHh-----hHHHHhcccccceeeeccccc
Confidence 44555555555566666665554321 2 24456666666666665433 233333456667777777776
Q ss_pred CChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHH-------HHHHHHHHHhcCC
Q 007838 371 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK-------GASAIARVLKDNS 443 (588)
Q Consensus 371 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-------~~~~l~~~l~~~~ 443 (588)
+.. ++..+..+.+|..||+++|.|+. ++..++++ +|+.|-+.||.+... |.+.+...+..
T Consensus 264 lke-----~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-- 330 (565)
T KOG0472|consen 264 LKE-----VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-- 330 (565)
T ss_pred ccc-----CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH--
Confidence 666 55566666677777777777665 44455555 677777777765321 11122222211
Q ss_pred CcCEEECcCCCC---Ch-HHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccc----
Q 007838 444 VITSLDLAYNPI---GA-DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEV---- 515 (588)
Q Consensus 444 ~L~~L~Ls~n~i---~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~---- 515 (588)
..+.=.++...= ++ ..............+.+.|+++.-+++....+.|... + -.-+..+++++|++....
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~-~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-K-SEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-h-hcceEEEecccchHhhhhhhhH
Confidence 000000000000 00 0000000000111345556666656655544444322 0 022555666666665331
Q ss_pred ---------ccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 516 ---------CSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 516 ---------~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
..+.+.+.+.|..+..+++|..|+|++|.+-. ++..+..+ .+|+.|||++|+|..
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~---LP~e~~~l-v~Lq~LnlS~NrFr~ 472 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND---LPEEMGSL-VRLQTLNLSFNRFRM 472 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh---cchhhhhh-hhhheeccccccccc
Confidence 12234555566677777777777777776654 33333334 447777777776543
No 16
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.80 E-value=1.4e-19 Score=186.87 Aligned_cols=366 Identities=27% Similarity=0.365 Sum_probs=314.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcC-CCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEcc
Q 007838 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226 (588)
Q Consensus 148 ~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls 226 (588)
+-..+.+...++.+++|..|++++|.+++.+...+++.+.+. ..++.|++..|.++..+...+...+..+..++.++++
T Consensus 101 ~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~ 180 (478)
T KOG4308|consen 101 DRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLS 180 (478)
T ss_pred cchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHH
Confidence 346778889999999999999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhh----CCCCCEEEecCCCCChhHHHHHHHHHhhCCC-ccEEEeeccCCChhhHHHHHHHHhhC
Q 007838 227 GNPIGDEGVKCLCDILVD----NAGVERLQLSSVDLRDEGAKAIAELLKNNSI-LRVLELNNNMIDYSGFTSLAEALLEN 301 (588)
Q Consensus 227 ~n~i~~~~~~~l~~~l~~----~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~ 301 (588)
.|.+...+...++..+.. ..++++|++.+|.++...+..+...+...+. +..+++..|.+.+.++..+...+..+
T Consensus 181 ~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~ 260 (478)
T KOG4308|consen 181 LNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVL 260 (478)
T ss_pred hcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhccc
Confidence 999988888888888875 7889999999999999999999988887776 78899999999999999999988887
Q ss_pred -CCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCC-ChhhHHHH
Q 007838 302 -STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI-SAKGAFHV 379 (588)
Q Consensus 302 -~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~~~~l 379 (588)
..++.+++..|.+++.+...+.+.+..++.+++|.++.|.+.+.+...+.+.+.... .+.++-+.++.. +..+...+
T Consensus 261 ~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~ 339 (478)
T KOG4308|consen 261 SETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKT-PLLHLVLGGTGKGTRGGTSVL 339 (478)
T ss_pred chhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcc-cchhhhccccCccchhHHHHH
Confidence 899999999999999999999999999999999999999999999998888887554 566666665543 43333344
Q ss_pred HHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhC-CCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 380 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
.........+.....+++...+++...+.....+. ..+..+++..+.+.+.+...++..+..++.++.++++.|...++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~ 419 (478)
T KOG4308|consen 340 AEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDE 419 (478)
T ss_pred HHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchh
Confidence 44444445556667777888888777777665543 34778888888888888889999999999999999999999989
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
+...+....+....++.++++.|.++..+.....+....++......+++|.+.-+
T Consensus 420 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (478)
T KOG4308|consen 420 GAEVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIGRA 475 (478)
T ss_pred hHHHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccccc
Confidence 88888888777669999999999999999999999999999999999999988744
No 17
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.77 E-value=9.3e-18 Score=152.66 Aligned_cols=260 Identities=18% Similarity=0.192 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCC---H---HHHHHHHHHHhcCCCccEE
Q 007838 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT---A---AGIKAFDGVLQSNIALKTL 223 (588)
Q Consensus 150 ~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~---~---~~~~~l~~~l~~~~~L~~L 223 (588)
..+...+-+..+..++++|||||.|+...+..++..+..-++|+..++++-..+ + ..+..+..++..|++|+.+
T Consensus 18 Dvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 18 DVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred hhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 344444555568889999999999999999999999888888888888765321 1 2345566777778888888
Q ss_pred EccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCC
Q 007838 224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303 (588)
Q Consensus 224 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 303 (588)
+||.|.++......+.+++.+...|++|.+++|.+...+-..++..+.++ ..| +....-+.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~n-----------KKaa~kp~ 158 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYN-----------KKAADKPK 158 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHH-----------hhhccCCC
Confidence 88888888777777888888888888888888887776666666554321 111 11123467
Q ss_pred cceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHH
Q 007838 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383 (588)
Q Consensus 304 L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (588)
|+...+..|++...+.......+..-.+|+++.+..|.|..+|+..++-.=...+.+|+.||+..|-++-.|...++..+
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 78888888877766666666666666788888888888888887766432222455788888888888888877788888
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhh--CCCccEEEeeCCcCC
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIH 428 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~ 428 (588)
...+.|++|.+..|-++..|+..+...+.. .++|..|-..+|.+.
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 877778888888888888777777766543 467777777766543
No 18
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.76 E-value=1.1e-16 Score=145.62 Aligned_cols=297 Identities=19% Similarity=0.223 Sum_probs=162.8
Q ss_pred HHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCC
Q 007838 207 IKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMI 286 (588)
Q Consensus 207 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 286 (588)
.+.....+.....++.++||+|.|+.+....++..+.+-.+|+..+++.-..+ .....+..
T Consensus 19 vk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftg-r~kde~~~------------------ 79 (388)
T COG5238 19 VKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTG-RDKDELYS------------------ 79 (388)
T ss_pred hhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhc-ccHHHHHH------------------
Confidence 33333444445566777777777776666666666666666666665543111 11111111
Q ss_pred ChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHh--------cCC
Q 007838 287 DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS--------SRK 358 (588)
Q Consensus 287 ~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--------~~~ 358 (588)
.+.-+.+++.+|++|+..+|+.|-++......+...+.+-+.|++|.+++|.++..+-..+..+++ ...
T Consensus 80 ---~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k 156 (388)
T COG5238 80 ---NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK 156 (388)
T ss_pred ---HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC
Confidence 123345555667777777777776666666666666777777777777777776555444444432 133
Q ss_pred CCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHH-HHhhCCCccEEEeeCCcCCHHHHHHHHH
Q 007838 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIAR 437 (588)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 437 (588)
|.|++++...|.+.+-.....+..+..-.+|+++.+..|.|..+|+..+.- .+..+++|+.|||..|.++..+...++.
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 566666666666655444444444444456666666666666665554432 2333456666666666666555555555
Q ss_pred HHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccccc
Q 007838 438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCS 517 (588)
Q Consensus 438 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 517 (588)
+++.++.|++|.+..|-++..|...+...+.. ...++|..|.+.+|.+.+.+..
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e--------------------------~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE--------------------------KFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred HhcccchhhhccccchhhccccHHHHHHHhhh--------------------------hcCCCccccccchhhhcCceee
Confidence 55555555555555555555544444333211 0235555555555555443211
Q ss_pred CCCCchhhhhhH-hhhhcccchhhhhccchhHHHHHHHH
Q 007838 518 GCNGLSFFHSAI-YSLKHMLFYSLCINYLQGAKCLAQSF 555 (588)
Q Consensus 518 ~~~~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~l~~~~ 555 (588)
. .+++... ..+|-|..|.+.||+|+......+.+
T Consensus 291 ~----~~l~~~e~~~~p~L~~le~ngNr~~E~~d~~d~~ 325 (388)
T COG5238 291 D----ISLNEFEQDAVPLLVDLERNGNRIKELADFGDYY 325 (388)
T ss_pred e----echhhhhhcccHHHHHHHHccCcchhHHHHHHHH
Confidence 0 0112222 26788888888899887644333333
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=153.65 Aligned_cols=323 Identities=20% Similarity=0.215 Sum_probs=206.4
Q ss_pred HHHHHHHHcC-CccEEEccCCC-CCHHHHHHHHHHhhcCCCccEEEeecCC-CCHHHHHHHHHHHhcCCCccEEEccCC-
Q 007838 153 TLNEFAKELR-AFSSVDMSGRN-FGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN- 228 (588)
Q Consensus 153 ~l~~~l~~~~-~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~~~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n- 228 (588)
.+..+++.+. .|+.|.++|+. ..+.. +......|++++.|.+.+|. +|+..+..+. ..|+.|++|++..+
T Consensus 128 VV~~~~~Rcgg~lk~LSlrG~r~v~~ss---lrt~~~~CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 128 VVENMISRCGGFLKELSLRGCRAVGDSS---LRTFASNCPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCS 201 (483)
T ss_pred ceehHhhhhccccccccccccccCCcch---hhHHhhhCCchhhhhhhcceeccHHHHHHHH---Hhcchhhhhhhcccc
Confidence 3445555553 58889998874 34443 44444568999999988884 7776555554 56777999999885
Q ss_pred CCChHHHHHHHHHHhhCCCCCEEEecCC-CCChhHHHHHHHHHhhCCCccEEEeecc-CCChhhHHHHHHHHhhCCCcce
Q 007838 229 PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAEALLENSTIRS 306 (588)
Q Consensus 229 ~i~~~~~~~l~~~l~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~ 306 (588)
.+++..++.+.+. |++|++|++++| ++++.+++.+.. .+..++.+.+.+| .+.+ +.+...-..+..+.+
T Consensus 202 ~iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~e~~l---e~l~~~~~~~~~i~~ 272 (483)
T KOG4341|consen 202 SITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCLELEL---EALLKAAAYCLEILK 272 (483)
T ss_pred hhHHHHHHHHHHh---hhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhhcccccccH---HHHHHHhccChHhhc
Confidence 6777665544443 688899999988 455555554443 3444666666665 3333 333333345666777
Q ss_pred eecCCC-CCChhHHHHHHHHhhcCCCCCEEEccCC-CCChhHHHHHHHHHhcCCCCceEEEccCCC-CChhhHHHHHHHH
Q 007838 307 LHLNGN-YGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYI 383 (588)
Q Consensus 307 L~L~~~-~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 383 (588)
+++..| .+++.+...+ -..+..|+.|+.+++ .+++..+..+. ..+.+|+.|-+.+|. +++.++..+.
T Consensus 273 lnl~~c~~lTD~~~~~i---~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~--- 342 (483)
T KOG4341|consen 273 LNLQHCNQLTDEDLWLI---ACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLG--- 342 (483)
T ss_pred cchhhhccccchHHHHH---hhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhhh---
Confidence 776666 3555553332 235667788888777 55565444443 566788888888874 7777665554
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCC-cCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHH
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (588)
.+++.|+.+++.++....++ .+...-.+++.|+++.+++| .|+++|+..+...-.....|+.+.|++++...+.
T Consensus 343 rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--- 417 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA--- 417 (483)
T ss_pred cCChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH---
Confidence 56778888888887554443 23333345778888888888 5777777777776666677888888888644332
Q ss_pred HHHHHhhCCCccEEEcccCC-CChhHHHHHHHHHhcCCcccEEEeec
Q 007838 463 LSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRA 508 (588)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~ 508 (588)
.-+.+..|++|+.+++-.|+ ++..+...+.. ++++++..-+..
T Consensus 418 ~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~---~lp~i~v~a~~a 461 (483)
T KOG4341|consen 418 TLEHLSICRNLERIELIDCQDVTKEAISRFAT---HLPNIKVHAYFA 461 (483)
T ss_pred HHHHHhhCcccceeeeechhhhhhhhhHHHHh---hCccceehhhcc
Confidence 33444667788888877775 55555555543 346666655443
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=9e-17 Score=186.65 Aligned_cols=286 Identities=16% Similarity=0.202 Sum_probs=151.4
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCC-CChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHH
Q 007838 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (588)
Q Consensus 218 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 296 (588)
.+|+.|++.+|.+.. +...+..+++|+.|+|+++. +... +. +..+++|++|+|++|... ..++.
T Consensus 611 ~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~i-----p~-ls~l~~Le~L~L~~c~~L----~~lp~ 675 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKEI-----PD-LSMATNLETLKLSDCSSL----VELPS 675 (1153)
T ss_pred cCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCcC-----Cc-cccCCcccEEEecCCCCc----cccch
Confidence 456677777666543 22333455677777776653 2221 11 234466777777766422 34555
Q ss_pred HHhhCCCcceeecCCCC-CChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhh
Q 007838 297 ALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (588)
Q Consensus 297 ~l~~~~~L~~L~L~~~~-~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 375 (588)
.+..+++|+.|++++|. ++. ++..+ ++++|+.|++++|..... +. ....+|+.|++++|.+..
T Consensus 676 si~~L~~L~~L~L~~c~~L~~-----Lp~~i-~l~sL~~L~Lsgc~~L~~----~p----~~~~nL~~L~L~~n~i~~-- 739 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEI-----LPTGI-NLKSLYRLNLSGCSRLKS----FP----DISTNISWLDLDETAIEE-- 739 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCc-----cCCcC-CCCCCCEEeCCCCCCccc----cc----cccCCcCeeecCCCcccc--
Confidence 66667777777777663 221 12212 456677777777643211 11 122467777777766554
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCCChH--HHHHHHH-HHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcC
Q 007838 376 AFHVAEYIKNCKSLLWINLYMNDIGDE--GAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452 (588)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 452 (588)
++..+ .+++|++|++.++..... ....+.. .....++|+.|+|++|..... ++..+..+++|+.|+|++
T Consensus 740 ---lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 740 ---FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred ---ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc----cChhhhCCCCCCEEECCC
Confidence 33222 355666666655321100 0000000 011235677777777753322 444556667777777777
Q ss_pred CC-CChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhh
Q 007838 453 NP-IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYS 531 (588)
Q Consensus 453 n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~ 531 (588)
|. ++. +...+ .+++|+.|++++|..-.. +... .++|++|+|++|.+... |..+..
T Consensus 812 C~~L~~-----LP~~~-~L~sL~~L~Ls~c~~L~~----~p~~---~~nL~~L~Ls~n~i~~i-----------P~si~~ 867 (1153)
T PLN03210 812 CINLET-----LPTGI-NLESLESLDLSGCSRLRT----FPDI---STNISDLNLSRTGIEEV-----------PWWIEK 867 (1153)
T ss_pred CCCcCe-----eCCCC-CccccCEEECCCCCcccc----cccc---ccccCEeECCCCCCccC-----------hHHHhc
Confidence 63 221 11111 246777777777653211 1111 25677777777777643 677777
Q ss_pred hhcccchhhhhcc-chhHHHHHHHHHhhhhccceeeccCC
Q 007838 532 LKHMLFYSLCINY-LQGAKCLAQSFKVVNEALTSIDLAFN 570 (588)
Q Consensus 532 l~~L~~L~Ls~n~-l~~~~~l~~~~~~~~~~L~~L~ls~N 570 (588)
+++|+.|+|++|+ +++ ++..+..+ ++|+.+++++|
T Consensus 868 l~~L~~L~L~~C~~L~~---l~~~~~~L-~~L~~L~l~~C 903 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQR---VSLNISKL-KHLETVDFSDC 903 (1153)
T ss_pred CCCCCEEECCCCCCcCc---cCcccccc-cCCCeeecCCC
Confidence 7788888887743 444 22223333 56777777766
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.3e-16 Score=172.48 Aligned_cols=260 Identities=17% Similarity=0.126 Sum_probs=179.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHH
Q 007838 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (588)
Q Consensus 190 ~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~ 269 (588)
..-..|+++++.++.. +..+. ++|+.|++.+|+++.. +. ..++|++|++++|+++... ..
T Consensus 201 ~~~~~LdLs~~~LtsL-----P~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N~LtsLP-----~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-----PDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSLP-----VL 260 (788)
T ss_pred CCCcEEEcCCCCCCcC-----Ccchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCCccCccc-----Cc
Confidence 4567889998888632 22222 3689999999988753 22 2478999999999887532 11
Q ss_pred HhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHH
Q 007838 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (588)
Q Consensus 270 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 349 (588)
.++|+.|++++|.+. .++.. ..+|+.|++++|+++... . ..++|+.|++++|.+.... .
T Consensus 261 ---p~sL~~L~Ls~N~L~-----~Lp~l---p~~L~~L~Ls~N~Lt~LP-----~---~p~~L~~LdLS~N~L~~Lp--~ 319 (788)
T PRK15387 261 ---PPGLLELSIFSNPLT-----HLPAL---PSGLCKLWIFGNQLTSLP-----V---LPPGLQELSVSDNQLASLP--A 319 (788)
T ss_pred ---ccccceeeccCCchh-----hhhhc---hhhcCEEECcCCcccccc-----c---cccccceeECCCCccccCC--C
Confidence 256889999988874 33332 357888899998876432 1 2467899999998876421 1
Q ss_pred HHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCH
Q 007838 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (588)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (588)
...+|+.|++++|.++. ++. ...+|++|+|++|+++. ++.. ..+|+.|++++|+|+.
T Consensus 320 -------lp~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 320 -------LPSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred -------CcccccccccccCcccc-----ccc---cccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence 12368888888888875 332 12478899999998875 2221 2578888888888773
Q ss_pred HHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecC
Q 007838 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (588)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 509 (588)
++.. ..+|+.|++++|.|+... .. .++|+.|++++|+++.... + ..+|+.|++++|
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~LP-----~l---~s~L~~LdLS~N~LssIP~--l------~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSLP-----VL---PSELKELMVSGNRLTSLPM--L------PSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCCC-----Cc---ccCCCEEEccCCcCCCCCc--c------hhhhhhhhhccC
Confidence 2222 256888999998877421 11 2578889999998876431 1 146788889988
Q ss_pred CCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 510 GLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 510 ~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
+|+. +|..+.++++|+.|+|++|.|++.
T Consensus 433 qLt~-----------LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 433 QLTR-----------LPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cccc-----------cChHHhhccCCCeEECCCCCCCch
Confidence 8884 478888899999999999998875
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1.5e-16 Score=172.01 Aligned_cols=260 Identities=18% Similarity=0.195 Sum_probs=189.6
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
..-..|+++++.++. ++..+. .+|+.|++.+|+++.. . ...++|++|++++|+++.. +..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~L-----P---~lp~~Lk~LdLs~N~LtsL-----P~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----P---ALPPELRTLEVSGNQLTSL-----PVL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCCC-----C---CCCCCCcEEEecCCccCcc-----cCc
Confidence 456789999998874 444333 5899999999998742 1 1247899999999998753 222
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHH
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~ 321 (588)
.++|++|++++|.++. +... ..+|+.|++++|+++. ++. ..++|+.|++++|.++....
T Consensus 261 ---p~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~~Lp~-- 319 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA-- 319 (788)
T ss_pred ---ccccceeeccCCchhh-----hhhc---hhhcCEEECcCCcccc-----ccc---cccccceeECCCCccccCCC--
Confidence 3789999999998764 2222 2569999999999853 332 24789999999998864321
Q ss_pred HHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCCh
Q 007838 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (588)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 401 (588)
-..+|+.|++++|.++.. ..+ ..+|+.|++++|.++. ++. ...+|+.|++++|.++.
T Consensus 320 ------lp~~L~~L~Ls~N~L~~L--P~l-------p~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 320 ------LPSELCKLWAYNNQLTSL--PTL-------PSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 376 (788)
T ss_pred ------CcccccccccccCccccc--ccc-------ccccceEecCCCccCC-----CCC---CCcccceehhhcccccc
Confidence 124688999999988642 111 2379999999999986 332 23578999999999875
Q ss_pred HHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccC
Q 007838 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (588)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (588)
++.. ..+|+.|+|++|+++.. +.. .++|+.|++++|.++... .. ..+|+.|++++|
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~L-----P~l---~s~L~~LdLS~N~LssIP-----~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSL-----PVL---PSELKELMVSGNRLTSLP-----ML---PSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCC-----CCc---ccCCCEEEccCCcCCCCC-----cc---hhhhhhhhhccC
Confidence 3322 25799999999998742 211 267999999999987532 11 146888999999
Q ss_pred CCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
+|+.. +..+..+ ++|+.|+|++|++++.
T Consensus 433 qLt~L-P~sl~~L----~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 433 QLTRL-PESLIHL----SSETTVNLEGNPLSER 460 (788)
T ss_pred ccccc-ChHHhhc----cCCCeEECCCCCCCch
Confidence 99864 3445544 9999999999999987
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=146.50 Aligned_cols=303 Identities=18% Similarity=0.183 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCC-CCCHHHHHHHHHHhhcCCCccEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEc
Q 007838 148 RESKQTLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNL 225 (588)
Q Consensus 148 ~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~~-~i~~~~~~~l~~~l~~~~~L~~L~L 225 (588)
......+..+...++++++|++.+| .+++.....++.. |++|+.|++..| .||+..++.+. ..|++|++|++
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~---C~~l~~l~L~~c~~iT~~~Lk~la---~gC~kL~~lNl 223 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY---CRKLRHLNLHSCSSITDVSLKYLA---EGCRKLKYLNL 223 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh---cchhhhhhhcccchhHHHHHHHHH---HhhhhHHHhhh
Confidence 4455678888899999999999998 6677776666544 899999999996 58887766554 45778999999
Q ss_pred cCC-CCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeecc-CCChhhHHHHHHHHhhCCC
Q 007838 226 SGN-PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAEALLENST 303 (588)
Q Consensus 226 s~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~ 303 (588)
+++ .|.+.+++.+.. .+..++.+.+.+| .+...+.+..+-..+.-+.++++.++ .++|.++..+. ..+..
T Consensus 224 Swc~qi~~~gv~~~~r---G~~~l~~~~~kGC--~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~---~~c~~ 295 (483)
T KOG4341|consen 224 SWCPQISGNGVQALQR---GCKELEKLSLKGC--LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA---CGCHA 295 (483)
T ss_pred ccCchhhcCcchHHhc---cchhhhhhhhccc--ccccHHHHHHHhccChHhhccchhhhccccchHHHHHh---hhhhH
Confidence 998 677766555544 3566888878876 33344555555455666778887666 78887755554 45789
Q ss_pred cceeecCCCC-CChhHHHHHHHHhhcCCCCCEEEccCC-CCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHH
Q 007838 304 IRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (588)
Q Consensus 304 L~~L~L~~~~-~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (588)
|+.|..++|. +++.... ....++++|+.|-++++ ++++.++..+. .+++.|+.+++..+....++ .+.+
T Consensus 296 lq~l~~s~~t~~~d~~l~---aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~--tL~s 366 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLW---ALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLITDG--TLAS 366 (483)
T ss_pred hhhhcccCCCCCchHHHH---HHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceehhh--hHhh
Confidence 9999999874 4444443 33457899999999999 68888877775 67889999999999766654 2445
Q ss_pred HHhcCCCCcEEEccCC-CCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCC-CCChHH
Q 007838 382 YIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADG 459 (588)
Q Consensus 382 ~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~ 459 (588)
.-.+|+.|+.|.++.+ .++|+|+..+...-.....|+.+.|++|..+.+ ...+.+..|++|+.+++-++ .++.++
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD---ATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH---HHHHHHhhCcccceeeeechhhhhhhh
Confidence 4578999999999998 688888888877666778999999999976655 35566778899999999887 566666
Q ss_pred HHHHHHHHhhCCCccEEEcc
Q 007838 460 AKALSEVLKFHGNINTLKLG 479 (588)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~ 479 (588)
+..+.. .++++++..+-
T Consensus 444 i~~~~~---~lp~i~v~a~~ 460 (483)
T KOG4341|consen 444 ISRFAT---HLPNIKVHAYF 460 (483)
T ss_pred hHHHHh---hCccceehhhc
Confidence 655553 45777776553
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=2.2e-15 Score=175.23 Aligned_cols=290 Identities=15% Similarity=0.135 Sum_probs=181.3
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHH
Q 007838 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA 267 (588)
Q Consensus 189 ~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~ 267 (588)
..+|++|++.+|.+.. +...+..+++|+.|+|+++. +.. ++ .+..+++|++|+|++|..... ++
T Consensus 610 ~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip-~ls~l~~Le~L~L~~c~~L~~----lp 674 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKE-----IP-DLSMATNLETLKLSDCSSLVE----LP 674 (1153)
T ss_pred ccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCc-----CC-ccccCCcccEEEecCCCCccc----cc
Confidence 3678888888887653 33445678899999999874 332 22 245579999999999864332 44
Q ss_pred HHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHH
Q 007838 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (588)
Q Consensus 268 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (588)
..+.++++|+.|++++|..- ..++..+ ++++|+.|++++|... ..++. ..++|++|++++|.+..
T Consensus 675 ~si~~L~~L~~L~L~~c~~L----~~Lp~~i-~l~sL~~L~Lsgc~~L----~~~p~---~~~nL~~L~L~~n~i~~--- 739 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENL----EILPTGI-NLKSLYRLNLSGCSRL----KSFPD---ISTNISWLDLDETAIEE--- 739 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCc----CccCCcC-CCCCCCEEeCCCCCCc----ccccc---ccCCcCeeecCCCcccc---
Confidence 55667789999999987421 3334333 5789999999998532 11221 24689999999998653
Q ss_pred HHHHHHHhcCCCCceEEEccCCCCChh--hHHH-HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeC
Q 007838 348 RALMSGLSSRKGKLAVLDIGNNSISAK--GAFH-VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 424 (588)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~--~~~~-l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 424 (588)
+...+ .+++|+.|++.++..... .... .+......++|+.|+|++|..... ++..+.++++|+.|+|++
T Consensus 740 --lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 740 --FPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred --ccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc----cChhhhCCCCCCEEECCC
Confidence 21111 345777787766432110 0000 011122356888899988854443 556677788899999988
Q ss_pred Cc-CCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccE
Q 007838 425 NN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503 (588)
Q Consensus 425 n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 503 (588)
|. +.. ++..+ .+++|+.|++++|..-.. +.. ...+|+.|+|++|.|+... .. +...++|+.
T Consensus 812 C~~L~~-----LP~~~-~L~sL~~L~Ls~c~~L~~----~p~---~~~nL~~L~Ls~n~i~~iP-~s----i~~l~~L~~ 873 (1153)
T PLN03210 812 CINLET-----LPTGI-NLESLESLDLSGCSRLRT----FPD---ISTNISDLNLSRTGIEEVP-WW----IEKFSNLSF 873 (1153)
T ss_pred CCCcCe-----eCCCC-CccccCEEECCCCCcccc----ccc---cccccCEeECCCCCCccCh-HH----HhcCCCCCE
Confidence 74 331 22222 357888899888742211 111 1257888888888887542 23 334488888
Q ss_pred EEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhcc
Q 007838 504 LDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (588)
Q Consensus 504 L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~ 544 (588)
|+|++|+-... ++..+..+++|+.+++++|.
T Consensus 874 L~L~~C~~L~~----------l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 874 LDMNGCNNLQR----------VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EECCCCCCcCc----------cCcccccccCCCeeecCCCc
Confidence 88887543333 34455566666666666663
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=2.8e-15 Score=163.31 Aligned_cols=250 Identities=20% Similarity=0.205 Sum_probs=106.9
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHH
Q 007838 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (588)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 298 (588)
+...|+++++.++.. +..+ ...|+.|+|++|+++... ..+. .+|++|++++|+++ .++..+
T Consensus 179 ~~~~L~L~~~~LtsL-----P~~I--p~~L~~L~Ls~N~LtsLP-----~~l~--~nL~~L~Ls~N~Lt-----sLP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTI-----PACI--PEQITTLILDNNELKSLP-----ENLQ--GNIKTLYANSNQLT-----SIPATL 239 (754)
T ss_pred CceEEEeCCCCcCcC-----Cccc--ccCCcEEEecCCCCCcCC-----hhhc--cCCCEEECCCCccc-----cCChhh
Confidence 445566655555432 1111 134556666666555321 1111 34566666665553 122222
Q ss_pred hhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHH
Q 007838 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (588)
Q Consensus 299 ~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (588)
..+|+.|++++|.+..... .+. ++|+.|++++|.+.. +...+ .++|+.|++++|.++.
T Consensus 240 --~~~L~~L~Ls~N~L~~LP~-----~l~--s~L~~L~Ls~N~L~~-----LP~~l---~~sL~~L~Ls~N~Lt~----- 297 (754)
T PRK15370 240 --PDTIQEMELSINRITELPE-----RLP--SALQSLDLFHNKISC-----LPENL---PEELRYLSVYDNSIRT----- 297 (754)
T ss_pred --hccccEEECcCCccCcCCh-----hHh--CCCCEEECcCCccCc-----ccccc---CCCCcEEECCCCcccc-----
Confidence 1345556665555543211 111 245555555555542 11111 1245555555555543
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
++..+. ++|+.|++++|.++. ++..+ .++|+.|++++|.++.. +..+ .++|+.|++++|.|+..
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~L-----P~~l--~~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTSL-----PASL--PPELQVLDVSKNQITVL 361 (754)
T ss_pred Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCccccC-----Chhh--cCcccEEECCCCCCCcC
Confidence 221111 245555555555543 11111 13555555555554421 1111 14555555555554421
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccch
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFY 538 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L 538 (588)
...+ .++|++|+|++|+++..... +. ..|+.|++++|++... |. .++.....++++..|
T Consensus 362 -----P~~l--p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~------sl~~~~~~~~~l~~L 420 (754)
T PRK15370 362 -----PETL--PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PE------SLPHFRGEGPQPTRI 420 (754)
T ss_pred -----Chhh--cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-ch------hHHHHhhcCCCccEE
Confidence 1111 13455555555555543221 11 2355555555555422 10 122233334555555
Q ss_pred hhhhccch
Q 007838 539 SLCINYLQ 546 (588)
Q Consensus 539 ~Ls~n~l~ 546 (588)
++.+|.++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 55555554
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=9.8e-16 Score=146.69 Aligned_cols=382 Identities=19% Similarity=0.206 Sum_probs=222.7
Q ss_pred HHHHHHHHHHcC-CccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccC-C
Q 007838 151 KQTLNEFAKELR-AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-N 228 (588)
Q Consensus 151 ~~~l~~~l~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n 228 (588)
.+++.++-..+| .-.+|+|..|+|+... ..++++.++|+.|||++|.|+..+..+|... ++|.+|-+.+ |
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP----~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIP----PGAFKTLHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNN 126 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCC----hhhccchhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCC
Confidence 344445544554 4678888888886542 2345566899999999999887777766544 3355555555 8
Q ss_pred CCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHH-HHhhCCCccee
Q 007838 229 PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSL 307 (588)
Q Consensus 229 ~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L 307 (588)
+|++.. ...+..+..++.|.+.-|++.-.-...+.++ ++|..|.+.+|.+ ..+++ .+..+..++.+
T Consensus 127 kI~~l~----k~~F~gL~slqrLllNan~i~Cir~~al~dL----~~l~lLslyDn~~-----q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 127 KITDLP----KGAFGGLSSLQRLLLNANHINCIRQDALRDL----PSLSLLSLYDNKI-----QSICKGTFQGLAAIKTL 193 (498)
T ss_pred chhhhh----hhHhhhHHHHHHHhcChhhhcchhHHHHHHh----hhcchhcccchhh-----hhhccccccchhccchH
Confidence 888764 3334445778888888888776544444444 7788888888876 55565 55567788888
Q ss_pred ecCCCCC-ChhHHH-------HHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHH
Q 007838 308 HLNGNYG-GALGAN-------ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (588)
Q Consensus 308 ~L~~~~~-~~~~~~-------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (588)
.+..|.+ .+-... ..+..++......-..+.+.++.....+.+...+.+- ...+. +.+...... -
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl---~s~~~-~~d~~d~~c---P 266 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESL---PSRLS-SEDFPDSIC---P 266 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhH---HHhhc-cccCcCCcC---h
Confidence 8877652 111111 1111122223333334444444433333332221100 01111 222222211 2
Q ss_pred HHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHH
Q 007838 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (588)
Q Consensus 380 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (588)
...++.+++|++|+|++|.++... ..++.....+++|.|..|+|....-..+ .....|+.|+|.+|+|+...
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~----~~aFe~~a~l~eL~L~~N~l~~v~~~~f----~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIE----DGAFEGAAELQELYLTRNKLEFVSSGMF----QGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred HHHHhhcccceEeccCCCccchhh----hhhhcchhhhhhhhcCcchHHHHHHHhh----hccccceeeeecCCeeEEEe
Confidence 344678888888888888887652 2334445788888888888775544333 33478888888888887665
Q ss_pred HHHHHHHHhhCCCccEEEcccCCC-ChhHHHHHHHHHhcCC-----------cccEEEeecCCCCcccc-----------
Q 007838 460 AKALSEVLKFHGNINTLKLGWCQI-GASGAEFVADMLRYNN-----------TISILDLRANGLRDEVC----------- 516 (588)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~-----------~L~~L~L~~n~l~~~~~----------- 516 (588)
..++... ..|.+|++-.|.+ .+-....+.+++.+.. .++.++++++.+.+.-+
T Consensus 339 ~~aF~~~----~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s 414 (498)
T KOG4237|consen 339 PGAFQTL----FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTS 414 (498)
T ss_pred ccccccc----ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCC
Confidence 5444333 5677788766553 3344556667765422 56677777766654321
Q ss_pred ----cCC-----------CCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCcccccc
Q 007838 517 ----SGC-----------NGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFP 581 (588)
Q Consensus 517 ----~~~-----------~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~ 581 (588)
..| ..++.+|..+- ..-.+|.+.+|.++... ... . .+| .+|+++|+|..-.-..|+
T Consensus 415 ~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp---~~~--~-~~l-~~dls~n~i~~Lsn~tf~ 485 (498)
T KOG4237|consen 415 SPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVP---DEL--L-RSL-LLDLSNNRISSLSNYTFS 485 (498)
T ss_pred CCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccC---HHH--H-hhh-hcccccCceehhhccccc
Confidence 112 33444444432 34567888999887642 221 2 667 899999998654333333
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=7e-15 Score=160.19 Aligned_cols=202 Identities=21% Similarity=0.256 Sum_probs=94.5
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007838 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (588)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 242 (588)
+...|+++++.++. ++..+ .++|+.|+|++|.|+... ..+ .++|++|++++|.++.. +..+
T Consensus 179 ~~~~L~L~~~~Lts-----LP~~I--p~~L~~L~Ls~N~LtsLP-----~~l--~~nL~~L~Ls~N~LtsL-----P~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTT-----IPACI--PEQITTLILDNNELKSLP-----ENL--QGNIKTLYANSNQLTSI-----PATL 239 (754)
T ss_pred CceEEEeCCCCcCc-----CCccc--ccCCcEEEecCCCCCcCC-----hhh--ccCCCEEECCCCccccC-----Chhh
Confidence 45667777666553 22222 245677777777665321 111 13567777776666532 2211
Q ss_pred hhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHH
Q 007838 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (588)
Q Consensus 243 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l 322 (588)
. .+|+.|+|++|.+.... ..+. .+|+.|++++|++. .++..+ ..+|+.|++++|.++...
T Consensus 240 ~--~~L~~L~Ls~N~L~~LP-----~~l~--s~L~~L~Ls~N~L~-----~LP~~l--~~sL~~L~Ls~N~Lt~LP---- 299 (754)
T PRK15370 240 P--DTIQEMELSINRITELP-----ERLP--SALQSLDLFHNKIS-----CLPENL--PEELRYLSVYDNSIRTLP---- 299 (754)
T ss_pred h--ccccEEECcCCccCcCC-----hhHh--CCCCEEECcCCccC-----cccccc--CCCCcEEECCCCccccCc----
Confidence 1 35666666666665321 1111 34666666666653 223222 235666666666554321
Q ss_pred HHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChH
Q 007838 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (588)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 402 (588)
..+ .++|+.|++++|.+... ... ..++|+.|++++|.++. ++..+ .++|+.|++++|.++.
T Consensus 300 -~~l--p~sL~~L~Ls~N~Lt~L-----P~~---l~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~L~~- 360 (754)
T PRK15370 300 -AHL--PSGITHLNVQSNSLTAL-----PET---LPPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKNQITV- 360 (754)
T ss_pred -ccc--hhhHHHHHhcCCccccC-----Ccc---ccccceeccccCCcccc-----CChhh--cCcccEEECCCCCCCc-
Confidence 101 12455555555555421 000 11245555555555543 22222 1455555555555542
Q ss_pred HHHHHHHHHhhCCCccEEEeeCCcCC
Q 007838 403 GAEKIADALKQNRTITTIDLGGNNIH 428 (588)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (588)
++..+ .++|++|+|++|+++
T Consensus 361 ----LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 361 ----LPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred ----CChhh--cCCcCEEECCCCcCC
Confidence 11111 134555555555544
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.9e-14 Score=133.04 Aligned_cols=187 Identities=15% Similarity=0.208 Sum_probs=126.3
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCC-cCCHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARV 438 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~ 438 (588)
.|++|||++..|+... +-..++.|.+|+.|.|.+++++|. ++..+.++.+|+.|+|++| .++..+.+.+
T Consensus 186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--- 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLL--- 255 (419)
T ss_pred hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHHH---
Confidence 5888888887777654 334567888888888888888887 6666677788888888887 5666654443
Q ss_pred HhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccC
Q 007838 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSG 518 (588)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 518 (588)
+..|+.|.+|+|++|.+..+.+.++...++ ++|+.|+|+++.- ..+...++-+...|++|.+|||++|.....
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---- 328 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---- 328 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCc----
Confidence 455788888888888776666665555444 6788888888741 112224445556678888888888754322
Q ss_pred CCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCC
Q 007838 519 CNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFN 570 (588)
Q Consensus 519 ~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N 570 (588)
.....|.+++.|++|.++.|..--...+.. ++.. ++|.+||+-+.
T Consensus 329 -----~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~-psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 -----DCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSK-PSLVYLDVFGC 373 (419)
T ss_pred -----hHHHHHHhcchheeeehhhhcCCChHHeee-eccC-cceEEEEeccc
Confidence 256777788888888888887433222222 3333 78888887665
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.9e-13 Score=124.44 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=100.1
Q ss_pred CCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCC-CCChhHHHHHHHH
Q 007838 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN-YGGALGANALAKG 325 (588)
Q Consensus 247 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~-~~~~~~~~~l~~~ 325 (588)
.|++|+|++..|+.. .+..++..|.+|+.|.|.+++++| .++..+.+..+|+.|+++.| .++..+... .
T Consensus 186 Rlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l---l 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQL---L 255 (419)
T ss_pred hhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCc----HHHHHHhccccceeeccccccccchhHHHH---H
Confidence 355555555544432 233344455555556666655553 33334445556666666655 244333332 2
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCC--CChhhHHHHHHHHhcCCCCcEEEccCC-CCChH
Q 007838 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDE 402 (588)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~ 402 (588)
+.+|+.|.+|+|+.|.+..+.+..+...+ .++|+.|+++|+. +... .+....++|++|.+|||++| .+++.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCch
Confidence 34566666666666655544443333322 2456666666652 2222 23344466777777777776 45554
Q ss_pred HHHHHHHHHhhCCCccEEEeeCCc-CCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHH
Q 007838 403 GAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (588)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (588)
.+..+.+.+-|++|.++.|. |....... +...|.|.+||+.|+ +.|..++.+-+
T Consensus 330 ----~~~~~~kf~~L~~lSlsRCY~i~p~~~~~----l~s~psl~yLdv~g~-vsdt~mel~~e 384 (419)
T KOG2120|consen 330 ----CFQEFFKFNYLQHLSLSRCYDIIPETLLE----LNSKPSLVYLDVFGC-VSDTTMELLKE 384 (419)
T ss_pred ----HHHHHHhcchheeeehhhhcCCChHHeee----eccCcceEEEEeccc-cCchHHHHHHH
Confidence 22333344677777777773 33332222 233477777777776 34444444443
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=4e-14 Score=135.74 Aligned_cols=283 Identities=22% Similarity=0.195 Sum_probs=159.7
Q ss_pred CCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCC-CCCChhHHHHHHH
Q 007838 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG-NYGGALGANALAK 324 (588)
Q Consensus 246 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-~~~~~~~~~~l~~ 324 (588)
+....+.|..|+|+......|..+ +.|+.|||++|.|+..+ ++++..+++|.+|-+.+ |+|++.....
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l----~~LRrLdLS~N~Is~I~----p~AF~GL~~l~~Lvlyg~NkI~~l~k~~--- 135 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTL----HRLRRLDLSKNNISFIA----PDAFKGLASLLSLVLYGNNKITDLPKGA--- 135 (498)
T ss_pred CcceEEEeccCCcccCChhhccch----hhhceecccccchhhcC----hHhhhhhHhhhHHHhhcCCchhhhhhhH---
Confidence 446677888888877666555544 67888888888776433 45555666776666665 6676655433
Q ss_pred HhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHH-HHhcCCCCcEEEccCCC-CChH
Q 007838 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMND-IGDE 402 (588)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~-l~~~ 402 (588)
+.++..|+.|.+.-|++.-.-...+ ..++++..|.+-.|.+.. ++. .+..+..++.+.+..|. +.+-
T Consensus 136 -F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 136 -FGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred -hhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccccc
Confidence 3455666666666666544322222 244566666666665443 222 34455566777776665 2222
Q ss_pred HHHHHHHHHhhC-------CCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccE
Q 007838 403 GAEKIADALKQN-------RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (588)
Q Consensus 403 ~~~~l~~~l~~~-------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (588)
.+..+.+.+..+ .-..-..+.+.++.......+...+. .+..--.+.+......+. ..++.+++|++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e---sl~s~~~~~d~~d~~cP~---~cf~~L~~L~~ 278 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE---SLPSRLSSEDFPDSICPA---KCFKKLPNLRK 278 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH---hHHHhhccccCcCCcChH---HHHhhcccceE
Confidence 222222211110 00111111222222222222222211 111101112222222221 22566788888
Q ss_pred EEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHH
Q 007838 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSF 555 (588)
Q Consensus 476 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~ 555 (588)
|+|++|+|+.+...+|.++ ..+++|.|..|+|... -...|.++..|+.|+|.+|+|+.. .+.++
T Consensus 279 lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v----------~~~~f~~ls~L~tL~L~~N~it~~--~~~aF 342 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFV----------SSGMFQGLSGLKTLSLYDNQITTV--APGAF 342 (498)
T ss_pred eccCCCccchhhhhhhcch----hhhhhhhcCcchHHHH----------HHHhhhccccceeeeecCCeeEEE--ecccc
Confidence 8888888888888777777 7888888888888755 456678888888888888888865 33445
Q ss_pred HhhhhccceeeccCCccc
Q 007838 556 KVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 556 ~~~~~~L~~L~ls~N~i~ 573 (588)
... .+|.+|+|-.|++.
T Consensus 343 ~~~-~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 343 QTL-FSLSTLNLLSNPFN 359 (498)
T ss_pred ccc-ceeeeeehccCccc
Confidence 555 67888888887763
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-13 Score=133.47 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=43.1
Q ss_pred EeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCCh-hHHHHHHHHHhcCC
Q 007838 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD-EGIRALMSGLSSRK 358 (588)
Q Consensus 280 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~ 358 (588)
.+++-++...|+..+...=.+.++|+.+.|.++.....+.+ .....|++++.|||++|-+.. ..+..++ ..+
T Consensus 99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~----eqL 171 (505)
T KOG3207|consen 99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIA----EQL 171 (505)
T ss_pred hhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHH----Hhc
Confidence 33444444455556555444566666666666655444332 233456666666666664432 2222232 244
Q ss_pred CCceEEEccCCCC
Q 007838 359 GKLAVLDIGNNSI 371 (588)
Q Consensus 359 ~~L~~L~Ls~n~l 371 (588)
|+|+.|+++.|.+
T Consensus 172 p~Le~LNls~Nrl 184 (505)
T KOG3207|consen 172 PSLENLNLSSNRL 184 (505)
T ss_pred ccchhcccccccc
Confidence 4555555555543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.9e-14 Score=135.55 Aligned_cols=235 Identities=17% Similarity=0.126 Sum_probs=154.8
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEc
Q 007838 146 LFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225 (588)
Q Consensus 146 i~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~L 225 (588)
+.-...+.+..--+++.+|+++.|.++.+...+.. .....|++++.|||+.|-+.. +..+.++..++++|+.|+|
T Consensus 105 vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 105 VEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNL 179 (505)
T ss_pred eEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhccc
Confidence 33344555666666788899999999987765433 355668999999999997753 6777888889999999999
Q ss_pred cCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccC-CChhhHHHHHHHHhhCCCc
Q 007838 226 SGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTI 304 (588)
Q Consensus 226 s~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L 304 (588)
+.|.+....-..... ..++|+.|.|+.|.++. +.+...+..+|+|+.|+|..|. +.. ..... ...+.|
T Consensus 180 s~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~~--~i~~~L 248 (505)
T KOG3207|consen 180 SSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILI---KATST--KILQTL 248 (505)
T ss_pred ccccccCCccccchh---hhhhhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccce---ecchh--hhhhHH
Confidence 999765322111222 24788999999999985 4555666678999999999884 221 11121 225788
Q ss_pred ceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHH-HHHHhcCCCCceEEEccCCCCChhhHHHHHHHH
Q 007838 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL-MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383 (588)
Q Consensus 305 ~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (588)
++|+|++|.+-+... ......++.|+.|+++.+.+.+...... .....+..++|+.|++..|+|.+.. ....+
T Consensus 249 ~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~---sl~~l 322 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR---SLNHL 322 (505)
T ss_pred hhccccCCccccccc---ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc---ccchh
Confidence 999999987654332 1235578888888888887754221111 0001134567888888887775531 12344
Q ss_pred hcCCCCcEEEccCCCCChH
Q 007838 384 KNCKSLLWINLYMNDIGDE 402 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~ 402 (588)
..+++|+.|.+..|.++.+
T Consensus 323 ~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccchhhhhhccccccccc
Confidence 5566777777777766554
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=1.6e-13 Score=116.81 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=88.5
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (588)
+++.|-+++|+++. ++-.+..+.+|+.|++.+|++.+ ++..+.++++|+.|+++-|++. .+++.+
T Consensus 34 ~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~-----~lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLN-----ILPRGF 98 (264)
T ss_pred hhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhh-----cCcccc
Confidence 34445555555544 33344455555555555555544 4444555555666655555433 234444
Q ss_pred hcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCC
Q 007838 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC 519 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 519 (588)
..+|.|+.|||.+|++.+.. +...+-.+..|.-|+|+.|.+.-. +..++++ ++|+.|.+.+|.+...
T Consensus 99 gs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndfe~l-p~dvg~l----t~lqil~lrdndll~l----- 165 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDFEIL-PPDVGKL----TNLQILSLRDNDLLSL----- 165 (264)
T ss_pred CCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCcccC-Chhhhhh----cceeEEeeccCchhhC-----
Confidence 55566666666666554432 111112224455666777665433 2334444 7888888888877744
Q ss_pred CCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 520 NGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 520 ~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
|..++.++.|++|++.+|+++-.
T Consensus 166 ------pkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 166 ------PKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ------cHHHHHHHHHHHHhcccceeeec
Confidence 88888888888888888887754
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-12 Score=111.71 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=125.9
Q ss_pred cCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHH
Q 007838 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (588)
Q Consensus 385 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (588)
.+.+++.|.|++|+++. ++..+..+.+|+.|++++|+|+ .++..++.++.|+.|+++-|++.. +.
T Consensus 31 ~~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~-----lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNI-----LP 95 (264)
T ss_pred chhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhc-----Cc
Confidence 44578889999999876 4445566789999999999887 466667778999999999886543 44
Q ss_pred HHHhhCCCccEEEcccCCCChhH-HHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhc
Q 007838 465 EVLKFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (588)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n 543 (588)
..+...+.|+.|||.+|++.+.. +..|..+ +.|+-|+|++|.+.- +|..++++++|+.|.+..|
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m----~tlralyl~dndfe~-----------lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYM----TTLRALYLGDNDFEI-----------LPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHH----HHHHHHHhcCCCccc-----------CChhhhhhcceeEEeeccC
Confidence 55566789999999999987643 3445555 889999999998873 5999999999999999999
Q ss_pred cchhHHHHHHHHHhhhhccceeeccCCccccCcc
Q 007838 544 YLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNI 577 (588)
Q Consensus 544 ~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~ 577 (588)
.+-. ++..+..+ +.|++|.+++|+++....
T Consensus 161 dll~---lpkeig~l-t~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 161 DLLS---LPKEIGDL-TRLRELHIQGNRLTVLPP 190 (264)
T ss_pred chhh---CcHHHHHH-HHHHHHhcccceeeecCh
Confidence 8766 55556656 789999999999876443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.5e-10 Score=101.86 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=26.5
Q ss_pred CCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh-HH
Q 007838 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG-AK 549 (588)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 549 (588)
+.|++|++++|.|+..+.. +.. .+++|++|++++|+|.+. . ....+..+++|+.|+|.+|-++. ..
T Consensus 64 ~~L~~L~L~~N~I~~i~~~-l~~---~lp~L~~L~L~~N~I~~l--------~-~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 64 PRLKTLDLSNNRISSISEG-LDK---NLPNLQELYLSNNKISDL--------N-ELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp TT--EEE--SS---S-CHH-HHH---H-TT--EEE-TTS---SC--------C-CCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred hhhhhcccCCCCCCccccc-hHH---hCCcCCEEECcCCcCCCh--------H-HhHHHHcCCCcceeeccCCcccchhh
Confidence 4555555555555443221 111 125555555555555433 1 12344455555555555555442 12
Q ss_pred HHHHHHHhhhhccceeec
Q 007838 550 CLAQSFKVVNEALTSIDL 567 (588)
Q Consensus 550 ~l~~~~~~~~~~L~~L~l 567 (588)
+-...+..+ |+|+.||-
T Consensus 131 YR~~vi~~l-P~Lk~LD~ 147 (175)
T PF14580_consen 131 YRLFVIYKL-PSLKVLDG 147 (175)
T ss_dssp HHHHHHHH--TT-SEETT
T ss_pred HHHHHHHHc-ChhheeCC
Confidence 233333434 66666664
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=1.1e-10 Score=108.48 Aligned_cols=235 Identities=20% Similarity=0.172 Sum_probs=139.1
Q ss_pred HHHHHhhCCCccEEEeeccC--CChhhH--HHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCC
Q 007838 266 IAELLKNNSILRVLELNNNM--IDYSGF--TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341 (588)
Q Consensus 266 l~~~l~~~~~L~~L~Ls~n~--l~~~~~--~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 341 (588)
++..+-.+..|+.|-+++.. |....+ ..++-.+.-.++|+.+.++.|.- +.+......-|.|.++......
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-----~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-----ENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-----hheeceeecCchhheeeeeccc
Confidence 44445555668888777652 322111 11222222345666676666631 1222222234667777766655
Q ss_pred CChhHHHHHHHHHhcCCCCceEEEccCCC-CChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEE
Q 007838 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420 (588)
Q Consensus 342 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 420 (588)
+.+... + .|.-...|..+-. -+..|. +...+.....|+++||++|.|+. +-+.++-.|.++.|
T Consensus 249 ~~~~~~--l-------~pe~~~~D~~~~E~~t~~G~--~~~~~dTWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L 312 (490)
T KOG1259|consen 249 IQDVPS--L-------LPETILADPSGSEPSTSNGS--ALVSADTWQELTELDLSGNLITQ-----IDESVKLAPKLRRL 312 (490)
T ss_pred cccccc--c-------cchhhhcCccCCCCCccCCc--eEEecchHhhhhhccccccchhh-----hhhhhhhccceeEE
Confidence 443211 1 0111111221110 000000 11111233468899999998875 44555556899999
Q ss_pred EeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCc
Q 007838 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500 (588)
Q Consensus 421 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 500 (588)
++++|.|+..+ .++. +++|+.|||++|.++. +-.+-.++.++++|.|++|.|... ..+.++ .+
T Consensus 313 ~lS~N~i~~v~--nLa~----L~~L~~LDLS~N~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KL----YS 375 (490)
T KOG1259|consen 313 ILSQNRIRTVQ--NLAE----LPQLQLLDLSGNLLAE-----CVGWHLKLGNIKTLKLAQNKIETL--SGLRKL----YS 375 (490)
T ss_pred eccccceeeeh--hhhh----cccceEeecccchhHh-----hhhhHhhhcCEeeeehhhhhHhhh--hhhHhh----hh
Confidence 99999988544 3444 3899999999997654 333334557999999999987554 234444 78
Q ss_pred ccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 501 ISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 501 L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
|..||+++|+|... .-...++++|.|+++.|.+|-+.+
T Consensus 376 LvnLDl~~N~Ie~l---------deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 376 LVNLDLSSNQIEEL---------DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred heeccccccchhhH---------HHhcccccccHHHHHhhcCCCccc
Confidence 99999999999755 234678999999999999998865
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=1.2e-10 Score=103.85 Aligned_cols=127 Identities=27% Similarity=0.294 Sum_probs=33.4
Q ss_pred CCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHH
Q 007838 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (588)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 410 (588)
.+++|+|.+|.|... ..+ ...+.+|+.|++++|.|+.. ..+..++.|++|++++|.|++. ...
T Consensus 20 ~~~~L~L~~n~I~~I--e~L----~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i-----~~~ 82 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENL----GATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSI-----SEG 82 (175)
T ss_dssp ------------------S------TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S------CHH
T ss_pred ccccccccccccccc--cch----hhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcc-----ccc
Confidence 455555555555431 111 12234555666666655542 2334455666666666655542 111
Q ss_pred H-hhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEc
Q 007838 411 L-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (588)
Q Consensus 411 l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (588)
+ ..+++|++|++++|+|.+.. . ...+..+++|+.|+|.+|++.+.. .+-...+..+|+|+.||-
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~--~-l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLN--E-LEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCC--C-CGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-TT-SEETT
T ss_pred hHHhCCcCCEEECcCCcCCChH--H-hHHHHcCCCcceeeccCCcccchh-hHHHHHHHHcChhheeCC
Confidence 1 23455666666666554321 1 123344566666666666554331 112223334455655543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=2.9e-10 Score=105.68 Aligned_cols=128 Identities=26% Similarity=0.268 Sum_probs=61.3
Q ss_pred ceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHh
Q 007838 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440 (588)
Q Consensus 361 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 440 (588)
|++|||++|.|+. +-..++-.|.++.|+++.|.+... +.+..+++|+.|||++|.++... .+..
T Consensus 286 LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~~~--Gwh~--- 349 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAECV--GWHL--- 349 (490)
T ss_pred hhhccccccchhh-----hhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHhhh--hhHh---
Confidence 5555555555544 334444455555555555555432 11333455555555555544321 1111
Q ss_pred cCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhH-HHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 441 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
.+-++++|.|++|.|.+ ++ .+.++-+|..||+++|+|.... +..++.+ |-|+.+.|.+|.+...
T Consensus 350 KLGNIKtL~La~N~iE~-----LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L----PCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET-----LS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNL----PCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhhhHhh-----hh-hhHhhhhheeccccccchhhHHHhcccccc----cHHHHHhhcCCCcccc
Confidence 12455555666554432 21 1233345556666666654422 2233333 6666666666666544
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.79 E-value=2.5e-09 Score=110.60 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=69.7
Q ss_pred CccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHH
Q 007838 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML 495 (588)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 495 (588)
.|.+.+.++|.++. +-..|.-.+.|+.|||+.|++.+. +.++.++.|++|||++|.+....--....+
T Consensus 165 ~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc- 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC- 232 (1096)
T ss_pred hHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhh-
Confidence 45555555655431 222222335566666666665542 234555666666666666554433222222
Q ss_pred hcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccc
Q 007838 496 RYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 496 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~ 573 (588)
. |..|.|+||.++.. ..+.++.+|+.||+++|-|.+-..+.- +..+ ..|+.|+|.+|++-
T Consensus 233 ---~-L~~L~lrnN~l~tL------------~gie~LksL~~LDlsyNll~~hseL~p-LwsL-s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 233 ---K-LQLLNLRNNALTTL------------RGIENLKSLYGLDLSYNLLSEHSELEP-LWSL-SSLIVLWLEGNPLC 292 (1096)
T ss_pred ---h-heeeeecccHHHhh------------hhHHhhhhhhccchhHhhhhcchhhhH-HHHH-HHHHHHhhcCCccc
Confidence 3 66777777766644 566677777777777776665332222 2223 45677777777663
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=3.6e-09 Score=109.88 Aligned_cols=196 Identities=27% Similarity=0.266 Sum_probs=110.0
Q ss_pred ceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCC-CCceEEEccCCCCChhhHHHHHHHH
Q 007838 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRK-GKLAVLDIGNNSISAKGAFHVAEYI 383 (588)
Q Consensus 305 ~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (588)
..+.+..+.+..... .+...+.++.|++.+|.+.+..... ... .+|+.|++++|.+.. ++..+
T Consensus 96 ~~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~n~i~~i~~~~------~~~~~nL~~L~l~~N~i~~-----l~~~~ 159 (394)
T COG4886 96 PSLDLNLNRLRSNIS-----ELLELTNLTSLDLDNNNITDIPPLI------GLLKSNLKELDLSDNKIES-----LPSPL 159 (394)
T ss_pred ceeeccccccccCch-----hhhcccceeEEecCCcccccCcccc------ccchhhcccccccccchhh-----hhhhh
Confidence 356666665421111 1233466777777777665522110 122 267777777777766 44456
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHH
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (588)
..+++|+.|++++|++.+. +......+.|+.|++++|++.+.... ......|++|.+++|.+.. .
T Consensus 160 ~~l~~L~~L~l~~N~l~~l-----~~~~~~~~~L~~L~ls~N~i~~l~~~-----~~~~~~L~~l~~~~N~~~~-----~ 224 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDL-----PKLLSNLSNLNNLDLSGNKISDLPPE-----IELLSALEELDLSNNSIIE-----L 224 (394)
T ss_pred hccccccccccCCchhhhh-----hhhhhhhhhhhheeccCCccccCchh-----hhhhhhhhhhhhcCCccee-----c
Confidence 7777777777777777663 33222446777777777776643221 1122447777777774211 1
Q ss_pred HHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhc
Q 007838 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (588)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n 543 (588)
...+....++..+.+.+|++... ... +...++++.|++++|.+.+. +.++.+.+|+.|++++|
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~~~-~~~----~~~l~~l~~L~~s~n~i~~i------------~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLEDL-PES----IGNLSNLETLDLSNNQISSI------------SSLGSLTNLRELDLSGN 287 (394)
T ss_pred chhhhhcccccccccCCceeeec-cch----hccccccceecccccccccc------------ccccccCccCEEeccCc
Confidence 12223345566666666665442 111 22236677777777777765 22667777777777777
Q ss_pred cchhH
Q 007838 544 YLQGA 548 (588)
Q Consensus 544 ~l~~~ 548 (588)
.++..
T Consensus 288 ~~~~~ 292 (394)
T COG4886 288 SLSNA 292 (394)
T ss_pred ccccc
Confidence 66543
No 41
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.72 E-value=2e-07 Score=99.58 Aligned_cols=140 Identities=26% Similarity=0.273 Sum_probs=94.6
Q ss_pred hCCCcceeecCCCC-CChhHHHHHHHHhhcCCCCCEEEccCC--CCChhHHHHHHHHHhcCCCCceEEEccCCC-CChhh
Q 007838 300 ENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN--SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKG 375 (588)
Q Consensus 300 ~~~~L~~L~L~~~~-~~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 375 (588)
.++.|+.|.+.+|. +++.+ +......++.|++|+++++ .+...+.... .+...+++|+.|+++++. +++.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLL--LLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhh--hhhhhcCCcCccchhhhhccCchh
Confidence 37899999998884 44433 3344557889999999873 2332221111 133455789999998887 88887
Q ss_pred HHHHHHHHhcCCCCcEEEccCCC-CChHHHHHHHHHHhhCCCccEEEeeCCc-CCHHHHHHHHHHHhcCCCcCEEECcCC
Q 007838 376 AFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYN 453 (588)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (588)
+..++ ..|++|++|.+.++. +++.|+..+... ++.|++|+|++|. +++.+...+ ...|++|+.|.+...
T Consensus 261 l~~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~~---~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 261 LSALA---SRCPNLETLSLSNCSNLTDEGLVSIAER---CPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHH---hhCCCcceEccCCCCccchhHHHHHHHh---cCcccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhc
Confidence 76665 348899999988886 788887766543 5779999999884 445554444 344777777665443
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.3e-08 Score=94.79 Aligned_cols=212 Identities=17% Similarity=0.206 Sum_probs=137.0
Q ss_pred CCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHH
Q 007838 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (588)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 410 (588)
-++-|.+.++.|...|...... ..++.++.+||.+|.|++.. .++..+.++|.|+.|+|+.|.+... |. .
T Consensus 46 a~ellvln~~~id~~gd~~~~~---~~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~----I~-~ 115 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFG---SSVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSD----IK-S 115 (418)
T ss_pred chhhheecCCCCCcchhHHHHH---HHhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCc----cc-c
Confidence 3445566677776655433322 34457888888888888753 3677788888888888888887764 21 1
Q ss_pred H-hhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCC-----CChHHHHHHHHHHhhCCCccEEEcccCCCC
Q 007838 411 L-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP-----IGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (588)
Q Consensus 411 l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (588)
+ ....+|++|-|.|..+..... ...+...|.+++|+++.|. ++++..+.+. +.+++|++..|...
T Consensus 116 lp~p~~nl~~lVLNgT~L~w~~~---~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s------~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 116 LPLPLKNLRVLVLNGTGLSWTQS---TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS------TEVLTLHQLPCLEQ 186 (418)
T ss_pred CcccccceEEEEEcCCCCChhhh---hhhhhcchhhhhhhhccchhhhhccccccccccc------hhhhhhhcCCcHHH
Confidence 1 134688888888887765543 3344455788888888772 3333333222 34556666666421
Q ss_pred h-hHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccc
Q 007838 485 A-SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALT 563 (588)
Q Consensus 485 ~-~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~ 563 (588)
. ...-.+.+. .+++..+-+..|.+.++ .--.....++.+-.|+|+.|+|..+..+- .+... ++|.
T Consensus 187 ~w~~~~~l~r~---Fpnv~sv~v~e~PlK~~---------s~ek~se~~p~~~~LnL~~~~idswasvD-~Ln~f-~~l~ 252 (418)
T KOG2982|consen 187 LWLNKNKLSRI---FPNVNSVFVCEGPLKTE---------SSEKGSEPFPSLSCLNLGANNIDSWASVD-ALNGF-PQLV 252 (418)
T ss_pred HHHHHHhHHhh---cccchheeeecCcccch---------hhcccCCCCCcchhhhhcccccccHHHHH-HHcCC-chhh
Confidence 1 112223333 38899999999987665 12245566777778999999998765443 35555 7899
Q ss_pred eeeccCCccccC
Q 007838 564 SIDLAFNEIRVS 575 (588)
Q Consensus 564 ~L~ls~N~i~~~ 575 (588)
.|.+++|++.|.
T Consensus 253 dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 253 DLRVSENPLSDP 264 (418)
T ss_pred eeeccCCccccc
Confidence 999999998764
No 43
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.65 E-value=4.4e-07 Score=97.01 Aligned_cols=114 Identities=27% Similarity=0.319 Sum_probs=51.1
Q ss_pred CCCCCEEEecCC-CCChhHHHHHHHHHhhCCCccEEEeecc--CCChhhHHHHHHHHhhCCCcceeecCCCC-CChhHHH
Q 007838 245 NAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN--MIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGAN 320 (588)
Q Consensus 245 ~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-~~~~~~~ 320 (588)
++.|+.|.+..+ .+++.+ +......++.|+.|+++++ .+...+... ......+.+|+.|+++++. +++.+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLL-LLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHh-hhhhhhcCCcCccchhhhhccCchhHH
Confidence 456666666655 333322 2233334555666666542 111111111 1122234555555555554 4444444
Q ss_pred HHHHHhhcCCCCCEEEccCCC-CChhHHHHHHHHHhcCCCCceEEEccCC
Q 007838 321 ALAKGLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNN 369 (588)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 369 (588)
.+.. .|++|++|.+.++. ++++++..+. ..++.|++|++++|
T Consensus 263 ~l~~---~c~~L~~L~l~~c~~lt~~gl~~i~----~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 263 ALAS---RCPNLETLSLSNCSNLTDEGLVSIA----ERCPSLRELDLSGC 305 (482)
T ss_pred HHHh---hCCCcceEccCCCCccchhHHHHHH----HhcCcccEEeeecC
Confidence 3332 24555555555443 4555554444 23334555555554
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.64 E-value=7.7e-07 Score=96.92 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=101.5
Q ss_pred CCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHH
Q 007838 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (588)
Q Consensus 301 ~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (588)
-.+|++|+++|...-..+ ...+.-..+|.|+.|.+.+-.+..+.+..++ .+.|+|..||++++++++.
T Consensus 121 r~nL~~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc----~sFpNL~sLDIS~TnI~nl------ 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDDFSQLC----ASFPNLRSLDISGTNISNL------ 188 (699)
T ss_pred HHhhhhcCccccchhhcc--HHHHHhhhCcccceEEecCceecchhHHHHh----hccCccceeecCCCCccCc------
Confidence 457888888775432211 1122222478888888888877766665565 5667888888888888873
Q ss_pred HHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHH--HHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG--ASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 381 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
..++++++|+.|.+.+-.+... ..+. .+.++++|++||+|.....+.. +....+.-..+|.|+.||.+++.+++.
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~--~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESY--QDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHhccccHHHHhccCCCCCch--hhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 5678888888888877666542 1122 2345688888888876544333 333333444468888888888887776
Q ss_pred HHHHHHHHHhhCCCccEEE
Q 007838 459 GAKALSEVLKFHGNINTLK 477 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~ 477 (588)
..+.+.+ ..++|+.+.
T Consensus 266 ~le~ll~---sH~~L~~i~ 281 (699)
T KOG3665|consen 266 ILEELLN---SHPNLQQIA 281 (699)
T ss_pred HHHHHHH---hCccHhhhh
Confidence 5554443 345555444
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=1.7e-08 Score=104.84 Aligned_cols=196 Identities=25% Similarity=0.310 Sum_probs=136.6
Q ss_pred cEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcC-CCCCEEEccCCCCChhHHHHHHHHHh
Q 007838 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLS 355 (588)
Q Consensus 277 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~ 355 (588)
..+++..+.+... ...+.....++.|++..+.+++... ..... ++|+.|++++|.+.... ..+
T Consensus 96 ~~l~~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~~l~-~~~----- 159 (394)
T COG4886 96 PSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIESLP-SPL----- 159 (394)
T ss_pred ceeeccccccccC-----chhhhcccceeEEecCCcccccCcc-----ccccchhhcccccccccchhhhh-hhh-----
Confidence 3577777766211 2223345789999999988765532 22334 38999999999887631 112
Q ss_pred cCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHH
Q 007838 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (588)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 435 (588)
..+++|+.|++++|.+++ ++......++|+.|++++|++.+. ...+.....|++|.+++|.+. ..
T Consensus 160 ~~l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~l-----~~~~~~~~~L~~l~~~~N~~~-----~~ 224 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISDL-----PPEIELLSALEELDLSNNSII-----EL 224 (394)
T ss_pred hccccccccccCCchhhh-----hhhhhhhhhhhhheeccCCccccC-----chhhhhhhhhhhhhhcCCcce-----ec
Confidence 366789999999999888 454444788999999999988873 333233456999999999522 13
Q ss_pred HHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
...+....++..+.+.+|++.+. ...+...++++.|++++|+++.... ++.. .+++.|++++|.+.+.
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~----~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS--LGSL----TNLRELDLSGNSLSNA 292 (394)
T ss_pred chhhhhcccccccccCCceeeec-----cchhccccccceecccccccccccc--cccc----CccCEEeccCcccccc
Confidence 33444557788888888877652 2334455779999999999888755 4444 8999999999999877
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=2.4e-09 Score=111.54 Aligned_cols=105 Identities=26% Similarity=0.271 Sum_probs=46.2
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHH
Q 007838 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (588)
Q Consensus 218 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 297 (588)
+.++.++...+.+...... . ..+..++.+.+..|.+.. +...+..+.+|+.|++.+|.|. .+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~-----~i~~~ 113 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIE-----KIENL 113 (414)
T ss_pred chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchh-----hcccc
Confidence 3455555555544332211 1 223444555555554433 1121233355666666666552 22221
Q ss_pred HhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007838 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (588)
Q Consensus 298 l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 343 (588)
+..+.+|+.|++++|.|+... .+..++.|+.|++++|.|.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred hhhhhcchheecccccccccc------chhhccchhhheeccCcch
Confidence 334555555555555544321 1223344555555555543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=9.1e-08 Score=89.34 Aligned_cols=213 Identities=17% Similarity=0.175 Sum_probs=131.3
Q ss_pred CccEEEccCCCCCHHHH-HHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 163 AFSSVDMSGRNFGDEGL-FFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~-~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
.++-+.+.++.|+..+. ..++. .++.++++||.+|.|++ +..+..++.+++.|++|++++|++... +..++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~---~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-I~~lp-- 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGS---SVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP-- 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHHH---Hhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-cccCc--
Confidence 34456677777754432 22332 36888999999998875 778888889999999999999987654 11121
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCC-----hhhHHHHHHHHhhCCCcceeecCCCCCCh
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID-----YSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 316 (588)
.-..+|++|-|.++.+... ....++...|.++.|+++.|.+. +.-... ..+.+++|+..+|..
T Consensus 118 -~p~~nl~~lVLNgT~L~w~---~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~------~s~~v~tlh~~~c~~-- 185 (418)
T KOG2982|consen 118 -LPLKNLRVLVLNGTGLSWT---QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED------WSTEVLTLHQLPCLE-- 185 (418)
T ss_pred -ccccceEEEEEcCCCCChh---hhhhhhhcchhhhhhhhccchhhhhccccccccc------cchhhhhhhcCCcHH--
Confidence 2347888888888776543 44455666677888888887321 111111 124566666666632
Q ss_pred hHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccC
Q 007838 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (588)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 396 (588)
.-+....+.-..+|++..+-+..|.+.+..-..-. ...+.+..|+|+.++|.+... .+.+.+++.|..|.+.+
T Consensus 186 ~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s----e~~p~~~~LnL~~~~idswas---vD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 186 QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS----EPFPSLSCLNLGANNIDSWAS---VDALNGFPQLVDLRVSE 258 (418)
T ss_pred HHHHHHHhHHhhcccchheeeecCcccchhhcccC----CCCCcchhhhhcccccccHHH---HHHHcCCchhheeeccC
Confidence 12233333333467777777777766543221111 234566677777777776532 24566777777777777
Q ss_pred CCCChH
Q 007838 397 NDIGDE 402 (588)
Q Consensus 397 n~l~~~ 402 (588)
+.+.|.
T Consensus 259 ~Pl~d~ 264 (418)
T KOG2982|consen 259 NPLSDP 264 (418)
T ss_pred Cccccc
Confidence 777653
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=2.3e-08 Score=104.17 Aligned_cols=242 Identities=23% Similarity=0.178 Sum_probs=142.5
Q ss_pred CCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHH
Q 007838 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (588)
Q Consensus 274 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (588)
+.++.++...+.+...... . ..+..++.+++..|.+.. +...+..+.+|+.|++.+|.|....-. +
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i~~~-l--- 114 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKIENL-L--- 114 (414)
T ss_pred chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhcccc-h---
Confidence 4456666665544322111 1 235566666676665543 122245677888888888877542110 1
Q ss_pred HhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHH
Q 007838 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (588)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (588)
..+++|++|++++|.|++. ..+..++.|+.|++++|.|.+. ..+..+..|+.+++++|.++.....
T Consensus 115 --~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~ 180 (414)
T KOG0531|consen 115 --SSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDI------SGLESLKSLKLLDLSYNRIVDIEND 180 (414)
T ss_pred --hhhhcchheeccccccccc------cchhhccchhhheeccCcchhc------cCCccchhhhcccCCcchhhhhhhh
Confidence 3456788888888888773 3456666788888888877763 1233356788888888877654321
Q ss_pred HHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCc
Q 007838 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (588)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 513 (588)
. +..+..|+.+++.+|.+...... .....+..+++..|.++.........+ ..|+++++.+|++..
T Consensus 181 ---~-~~~~~~l~~l~l~~n~i~~i~~~------~~~~~l~~~~l~~n~i~~~~~l~~~~~----~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 181 ---E-LSELISLEELDLGGNSIREIEGL------DLLKKLVLLSLLDNKISKLEGLNELVM----LHLRELYLSGNRISR 246 (414)
T ss_pred ---h-hhhccchHHHhccCCchhcccch------HHHHHHHHhhcccccceeccCcccchh----HHHHHHhcccCcccc
Confidence 1 34457777788888766543211 111234444666666655322111111 037788888888874
Q ss_pred ccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccc
Q 007838 514 EVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 514 ~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~ 573 (588)
. +..+..++.+..|++.+|++.....+.. . ..+..+....|.+.
T Consensus 247 ~-----------~~~~~~~~~l~~l~~~~n~~~~~~~~~~----~-~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 247 S-----------PEGLENLKNLPVLDLSSNRISNLEGLER----L-PKLSELWLNDNKLA 290 (414)
T ss_pred c-----------cccccccccccccchhhccccccccccc----c-chHHHhccCcchhc
Confidence 4 3667788888888888888776433322 1 45666667777665
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=1.3e-07 Score=98.22 Aligned_cols=127 Identities=18% Similarity=0.183 Sum_probs=77.6
Q ss_pred CcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 389 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
|...+.++|.+.- +-..+.-++.|+.|||++|++++.. .++.|+.|+.|||++|.+.... .+-.
T Consensus 166 L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp-----~l~~ 229 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVP-----QLSM 229 (1096)
T ss_pred HhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhcccc-----ccch
Confidence 5555555665432 2233333456777777777776442 3445577777777777654321 1111
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccch
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~ 546 (588)
.-..|+.|+|++|.++.. ..+.++ .+|+.||+++|-|.+- .-...++.+..|+.|+|.||-+-
T Consensus 230 ~gc~L~~L~lrnN~l~tL--~gie~L----ksL~~LDlsyNll~~h---------seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 230 VGCKLQLLNLRNNALTTL--RGIENL----KSLYGLDLSYNLLSEH---------SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhheeeeecccHHHhh--hhHHhh----hhhhccchhHhhhhcc---------hhhhHHHHHHHHHHHhhcCCccc
Confidence 113478888888876553 223333 7888888888887755 23456778888888888888765
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=95.38 Aligned_cols=167 Identities=11% Similarity=0.116 Sum_probs=120.3
Q ss_pred CCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHH
Q 007838 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 408 (588)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 408 (588)
-.+|++|+++|...-..+ ....+...+|.|+.|.+++-.+..+. +......+|+|..||++++.+++.
T Consensus 121 r~nL~~LdI~G~~~~s~~---W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl------ 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNG---WPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL------ 188 (699)
T ss_pred HHhhhhcCccccchhhcc---HHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc------
Confidence 358999999998544333 33344467899999999998776654 555668899999999999999884
Q ss_pred HHHhhCCCccEEEeeCCcCCH-HHHHHHHHHHhcCCCcCEEECcCCCCChHH--HHHHHHHHhhCCCccEEEcccCCCCh
Q 007838 409 DALKQNRTITTIDLGGNNIHS-KGASAIARVLKDNSVITSLDLAYNPIGADG--AKALSEVLKFHGNINTLKLGWCQIGA 485 (588)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (588)
.+++++++|+.|.+.+=.+.. .....+.. +++|+.||+|.....+.. +....+.-..+|+|+.||.++..+++
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~----L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFN----LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhc----ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 457788999999998877765 33334444 499999999997654443 33333444557999999999888877
Q ss_pred hHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 486 SGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
...+.+ +..+++|+.+..-++.....
T Consensus 265 ~~le~l---l~sH~~L~~i~~~~~~~~~~ 290 (699)
T KOG3665|consen 265 EILEEL---LNSHPNLQQIAALDCLALSA 290 (699)
T ss_pred HHHHHH---HHhCccHhhhhhhhhhcccc
Confidence 655544 55678888877665444333
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=3.3e-07 Score=100.06 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=63.6
Q ss_pred cCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchh
Q 007838 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSF 524 (588)
Q Consensus 445 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 524 (588)
++.|+|++|.+.... ...+..+++|+.|+|++|++++..+..+..+ ++|+.|+|++|++.+.
T Consensus 420 v~~L~L~~n~L~g~i----p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l----~~L~~LdLs~N~lsg~---------- 481 (623)
T PLN03150 420 IDGLGLDNQGLRGFI----PNDISKLRHLQSINLSGNSIRGNIPPSLGSI----TSLEVLDLSYNSFNGS---------- 481 (623)
T ss_pred EEEEECCCCCccccC----CHHHhCCCCCCEEECCCCcccCcCChHHhCC----CCCCEEECCCCCCCCC----------
Confidence 566666666665432 2233445667777777777665544444443 6777777777777766
Q ss_pred hhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCc
Q 007838 525 FHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNE 571 (588)
Q Consensus 525 ~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~ 571 (588)
+|+.++++++|+.|+|++|+++|.. +..+......+..+++++|.
T Consensus 482 iP~~l~~L~~L~~L~Ls~N~l~g~i--P~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 482 IPESLGQLTSLRILNLNGNSLSGRV--PAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CchHHhcCCCCCEEECcCCcccccC--ChHHhhccccCceEEecCCc
Confidence 5666777777777777777776653 23232211345566666664
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=6.5e-08 Score=70.82 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=18.9
Q ss_pred hhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCc
Q 007838 527 SAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNE 571 (588)
Q Consensus 527 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~ 571 (588)
..|.++++|++|+|++|.++.. .+..+..+ ++|++|++++|+
T Consensus 19 ~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l-~~L~~L~l~~N~ 60 (61)
T PF13855_consen 19 DSFSNLPNLETLDLSNNNLTSI--PPDAFSNL-PNLRYLDLSNNN 60 (61)
T ss_dssp TTTTTGTTESEEEETSSSESEE--ETTTTTTS-TTESEEEETSSS
T ss_pred HHHcCCCCCCEeEccCCccCcc--CHHHHcCC-CCCCEEeCcCCc
Confidence 3444444445555554444433 22233333 445555555554
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=1e-07 Score=69.76 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=55.1
Q ss_pred CCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccc
Q 007838 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYL 545 (588)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l 545 (588)
++|++|++++|+++......|..+ ++|++|++++|.+... -+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l----~~L~~L~l~~N~l~~i----------~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNL----PNLETLDLSNNNLTSI----------PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTG----TTESEEEETSSSESEE----------ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCC----CCCCEeEccCCccCcc----------CHHHHcCCCCCCEEeCcCCcC
Confidence 579999999999999987777766 9999999999999977 567899999999999999985
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.32 E-value=1.3e-08 Score=102.93 Aligned_cols=195 Identities=17% Similarity=0.190 Sum_probs=138.6
Q ss_pred CCCCEEEccCCCCChh--HHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHH
Q 007838 330 KSLRELHLHGNSIGDE--GIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (588)
Q Consensus 330 ~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 407 (588)
.--...|++.|++... .+..+. .|+.+.+..|.+.. ++..+..+..|+.|||+.|+++. +
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~--------~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~-----l 136 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFV--------SLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSH-----L 136 (722)
T ss_pred cchhhhhccccccccCchHHHHHH--------HHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhc-----C
Confidence 3445678888877642 233221 47788888887766 67778888999999999998876 3
Q ss_pred HHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhH
Q 007838 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (588)
Q Consensus 408 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (588)
+..+.. .-|+.|-+++|+++. ++.-+...++|..||.+.|.|... ..-+.....|+.|++..|++....
T Consensus 137 p~~lC~-lpLkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~sl-----psql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 137 PDGLCD-LPLKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQSL-----PSQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred Chhhhc-CcceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhhhc-----hHHhhhHHHHHHHHHhhhhhhhCC
Confidence 444433 459999999999873 333334448899999999977543 222334467889999999987664
Q ss_pred HHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeec
Q 007838 488 AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDL 567 (588)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~l 567 (588)
.+ +.. -.|..||++.|++.-. |-.|..|..|++|-|.+|-++....-......+ .-.++|++
T Consensus 206 ~E-l~~-----LpLi~lDfScNkis~i-----------Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV-HIFKyL~~ 267 (722)
T KOG0532|consen 206 EE-LCS-----LPLIRLDFSCNKISYL-----------PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV-HIFKYLST 267 (722)
T ss_pred HH-HhC-----CceeeeecccCceeec-----------chhhhhhhhheeeeeccCCCCCChHHHHhccce-eeeeeecc
Confidence 43 333 4699999999999965 999999999999999999998742222222222 56788888
Q ss_pred cCCc
Q 007838 568 AFNE 571 (588)
Q Consensus 568 s~N~ 571 (588)
+-++
T Consensus 268 qA~q 271 (722)
T KOG0532|consen 268 QACQ 271 (722)
T ss_pred hhcc
Confidence 7763
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.30 E-value=1.8e-08 Score=101.84 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHH
Q 007838 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL 411 (588)
Q Consensus 332 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 411 (588)
|+.|-+++|+++. +...+. ..+.|..||.+.|.+.. ++..+..+.+|+.|++..|++.+ ++..+
T Consensus 145 Lkvli~sNNkl~~-----lp~~ig-~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~-----lp~El 208 (722)
T KOG0532|consen 145 LKVLIVSNNKLTS-----LPEEIG-LLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED-----LPEEL 208 (722)
T ss_pred ceeEEEecCcccc-----CCcccc-cchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh-----CCHHH
Confidence 5566666665542 111121 23456667777666655 55566666677777777776655 33333
Q ss_pred hhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccC
Q 007838 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (588)
Q Consensus 412 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (588)
. .-.|..||+++|+|.. ++-.+..+++|++|-|.+|++..-.++ ++.. ....-.|+|+..-|
T Consensus 209 ~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAq-IC~k-GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 209 C-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQ-ICEK-GKVHIFKYLSTQAC 270 (722)
T ss_pred h-CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHH-HHhc-cceeeeeeecchhc
Confidence 3 2356777777777662 344455557777777777776654333 2221 11233455555555
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.14 E-value=5.2e-07 Score=100.80 Aligned_cols=108 Identities=22% Similarity=0.164 Sum_probs=64.6
Q ss_pred CCCccEEEccCCC--CChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHH
Q 007838 217 NIALKTLNLSGNP--IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294 (588)
Q Consensus 217 ~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 294 (588)
++.|++|-+..|. +... -..++..++.|+.|+|++|.-... ++..+..+-+|++|+++++.+ ..+
T Consensus 544 ~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~l~~----LP~~I~~Li~LryL~L~~t~I-----~~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSSLSK----LPSSIGELVHLRYLDLSDTGI-----SHL 610 (889)
T ss_pred CCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCccCc----CChHHhhhhhhhcccccCCCc-----ccc
Confidence 4467777777764 2221 234455667777888777643332 333344445577777777776 466
Q ss_pred HHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCC
Q 007838 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341 (588)
Q Consensus 295 ~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 341 (588)
|..+.+++.|.+|++..+.... .++.....+++|++|.+....
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~----~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLE----SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred chHHHHHHhhheeccccccccc----cccchhhhcccccEEEeeccc
Confidence 7777777777888777664211 112333447777777776554
No 57
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=2.4e-06 Score=93.40 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=40.1
Q ss_pred CcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 389 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
++.|+|++|.+... ++..+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|.+....+ ..+.
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIP----ESLG 487 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCc----hHHh
Confidence 44455555544432 333344445555555555544432 23333344555555555554443322 2223
Q ss_pred hCCCccEEEcccCCCChhHHHHH
Q 007838 469 FHGNINTLKLGWCQIGASGAEFV 491 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l 491 (588)
.+++|++|+|++|+++...+..+
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred cCCCCCEEECcCCcccccCChHH
Confidence 33455555555555444444433
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.9e-06 Score=71.49 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=95.0
Q ss_pred CCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHH
Q 007838 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (588)
Q Consensus 415 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (588)
..+..++|+.|++.. +......+.....|+..+|++|.+.+...+ +. ...+.++.|++.+|+|.+...+ ++.+
T Consensus 27 kE~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~fp~k-ft---~kf~t~t~lNl~~neisdvPeE-~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKKFPKK-FT---IKFPTATTLNLANNEISDVPEE-LAAM 99 (177)
T ss_pred HHhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhhCCHH-Hh---hccchhhhhhcchhhhhhchHH-Hhhh
Confidence 456678888887651 223444455567788888988876653222 22 2235788899999999888665 8887
Q ss_pred HhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 495 LRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 495 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
+.|+.|+++.|.+.-+ |..+..+.+|-.|+..+|.+-.... +.+-. ...-..++.++++.+
T Consensus 100 ----~aLr~lNl~~N~l~~~-----------p~vi~~L~~l~~Lds~~na~~eid~--dl~~s--~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 100 ----PALRSLNLRFNPLNAE-----------PRVIAPLIKLDMLDSPENARAEIDV--DLFYS--SLPALIKLGNEPLGD 160 (177)
T ss_pred ----HHhhhcccccCccccc-----------hHHHHHHHhHHHhcCCCCccccCcH--HHhcc--ccHHHHHhcCCcccc
Confidence 8999999999999866 7778889999999999888654321 12211 334445567777777
Q ss_pred Ccccccc
Q 007838 575 SNIIFFP 581 (588)
Q Consensus 575 ~~~~~l~ 581 (588)
+-...+.
T Consensus 161 ~~~~klq 167 (177)
T KOG4579|consen 161 ETKKKLQ 167 (177)
T ss_pred cCccccc
Confidence 6554433
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=4e-06 Score=69.59 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=88.0
Q ss_pred CCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCc
Q 007838 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGL 522 (588)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 522 (588)
..+..++|+.|.+... ......+.....|+.++|++|.+.+...+.-.+. +.++.|+|.+|.|.+.
T Consensus 27 kE~h~ldLssc~lm~i--~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf----~t~t~lNl~~neisdv-------- 92 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYI--ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKF----PTATTLNLANNEISDV-------- 92 (177)
T ss_pred HHhhhcccccchhhHH--HHHHHHHhCCceEEEEecccchhhhCCHHHhhcc----chhhhhhcchhhhhhc--------
Confidence 4467789999976521 1122233445678889999999987766655544 7899999999999977
Q ss_pred hhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCccccc
Q 007838 523 SFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFF 580 (588)
Q Consensus 523 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l 580 (588)
|..+..++.|+.|+++.|.+.. .+..+..+ .+|-.||..+|.+-+..++.|
T Consensus 93 ---PeE~Aam~aLr~lNl~~N~l~~---~p~vi~~L-~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 93 ---PEELAAMPALRSLNLRFNPLNA---EPRVIAPL-IKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred ---hHHHhhhHHhhhcccccCcccc---chHHHHHH-HhHHHhcCCCCccccCcHHHh
Confidence 9999999999999999999876 33333334 678999999998887777643
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.94 E-value=1.6e-06 Score=96.98 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=67.8
Q ss_pred HcCCccEEEccCCC--CCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 160 ELRAFSSVDMSGRN--FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
.++.|+.|-+..+. +... -...+..++.|+.|||++|.= ...++..++.+-+|++|++++..+..
T Consensus 543 ~~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~~----- 609 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGISH----- 609 (889)
T ss_pred CCCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCccc-----
Confidence 34456666666553 2111 122244467777777776531 12344555555667777777776652
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeec
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHL 309 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 309 (588)
++..+.+++.|.+|++..+.-... ++.....+.+|++|.+....... .......+..+.+|+.+..
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~~~~--~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSALSN--DKLLLKELENLEHLENLSI 675 (889)
T ss_pred cchHHHHHHhhheecccccccccc----ccchhhhcccccEEEeecccccc--chhhHHhhhcccchhhhee
Confidence 556666667777777776543221 12333335667777775543111 1222333344555555554
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=9.9e-06 Score=54.30 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=18.8
Q ss_pred cccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 500 TISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 500 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
+|++|++++|+|.+. +..+++|++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~~l-----------~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-----------PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSH-----------GGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCccc-----------CchHhCCCCCCEEEecCCCCCC
Confidence 455666666655533 3345555555555555555543
No 62
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.69 E-value=4.7e-05 Score=75.95 Aligned_cols=308 Identities=16% Similarity=0.057 Sum_probs=158.3
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHH
Q 007838 189 NQTAEEVSFAANGITAAGIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI 266 (588)
Q Consensus 189 ~~~L~~L~L~~~~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l 266 (588)
-..++.+.+.-|.+..+....+..... .++.+++++++.|.+.+.....+..- .--+.++.|++++..+..+
T Consensus 134 s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~l 207 (553)
T KOG4242|consen 134 SAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISKL 207 (553)
T ss_pred cccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHHh
Confidence 346777777777766554444433322 24567888888888887754444322 1227778887777655444
Q ss_pred HHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChh-HHHHHHHHhhcCCCCCEEEccCCCCCh-
Q 007838 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL-GANALAKGLEGNKSLRELHLHGNSIGD- 344 (588)
Q Consensus 267 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~-~~~~l~~~l~~~~~L~~L~Ls~n~l~~- 344 (588)
..- ..-..+.+++++.|...+.. ..+.........++.++.++..+.-+ .+..+. ...-+.+...+++.|....
T Consensus 208 ~~q-sg~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~--~g~~tkl~~~kls~ng~s~s 283 (553)
T KOG4242|consen 208 LIQ-SGRLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLA--AGRTTKLTFGKLSRNGTSPS 283 (553)
T ss_pred hhh-hccccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhcccccc--cccccccchhhhccCCCCcc
Confidence 311 11234778888888665432 22222233345667777776654322 111111 1223456666666664332
Q ss_pred ---hHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCC--cEEEccCCCCChHHHHHHHHHHhhCCCccE
Q 007838 345 ---EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL--LWINLYMNDIGDEGAEKIADALKQNRTITT 419 (588)
Q Consensus 345 ---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L--~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 419 (588)
++....-+ .++.-+++ +|++.++..-++....+.-.+...... -.+++..|...+..+. ++-..-..+++
T Consensus 284 kg~Egg~~~k~-~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vl---eaci~g~R~q~ 358 (553)
T KOG4242|consen 284 KGEEGGGAEKD-TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVL---EACIFGQRVQV 358 (553)
T ss_pred ccccccccccc-ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchh---hccccceeeeE
Confidence 11111111 11233456 777777666555443332222221111 3355555554443211 11111245788
Q ss_pred EEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCC-----ChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHH
Q 007838 420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI-----GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (588)
Q Consensus 420 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-----~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (588)
|++..|++..++.... .+...+.++.+++.+-.- .......+...-+...-+..+.++.|..... ...+.+.
T Consensus 359 l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~in~ 435 (553)
T KOG4242|consen 359 LLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAINK 435 (553)
T ss_pred eecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHHHh
Confidence 8888887766554333 445567777777654311 1111111111112234567777777776554 3334444
Q ss_pred HhcCCcccEEEeecCCCCcc
Q 007838 495 LRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 495 l~~~~~L~~L~L~~n~l~~~ 514 (588)
+...+.+.+|++++|...+.
T Consensus 436 l~stqtl~kldisgn~mgd~ 455 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDG 455 (553)
T ss_pred hccCcccccccccCCCcccC
Confidence 55567888888888887766
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=2.4e-05 Score=69.59 Aligned_cols=134 Identities=19% Similarity=0.139 Sum_probs=88.1
Q ss_pred CcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 389 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
=++++|.+.++...+ .+... ..+...+||++|.+... ..+...+.|.+|.+++|+|+..... +. .
T Consensus 21 e~e~~LR~lkip~ie--nlg~~---~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~-L~---~ 85 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGAT---LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPD-LD---T 85 (233)
T ss_pred ccccccccccccchh--hcccc---ccccceecccccchhhc------ccCCCccccceEEecCCcceeeccc-hh---h
Confidence 466777777665431 11111 25778899999987643 2345558899999999988865332 22 3
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
..++|+.|.|.+|.|...+-- +-+..|++|++|.+-+|.+.+.- ..-.-.+..+|+|+.||.++=.-..
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl---~pLa~~p~L~~Ltll~Npv~~k~-------~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDL---DPLASCPKLEYLTLLGNPVEHKK-------NYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred hccccceEEecCcchhhhhhc---chhccCCccceeeecCCchhccc-------CceeEEEEecCcceEeehhhhhHHH
Confidence 347899999999987654321 11344699999999999998761 0012336688999999988766543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=6.1e-05 Score=70.23 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=66.6
Q ss_pred CCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHH
Q 007838 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 408 (588)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 408 (588)
+.+.++|+..||.++|..+. ..++.|+.|.|+-|.|+.- ..+..|++|++|+|..|.|.+.. ++
T Consensus 18 l~~vkKLNcwg~~L~DIsic-------~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sld--EL- 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-------EKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLD--EL- 81 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-------HhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHH--HH-
Confidence 34667777778877775432 2456778888887777763 45677778888888877776632 22
Q ss_pred HHHhhCCCccEEEeeCCcCC-HHHHHHHHHHHhcCCCcCEEE
Q 007838 409 DALKQNRTITTIDLGGNNIH-SKGASAIARVLKDNSVITSLD 449 (588)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~i~-~~~~~~l~~~l~~~~~L~~L~ 449 (588)
..++++++|+.|-|..|.-. ..|...=...|..+|+|+.||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 34566677777777766432 223334444556667777665
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.37 E-value=0.00016 Score=48.45 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=16.7
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCCh
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 401 (588)
+|++|++++|.|++ ++..+..+++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 34555555555544 33334445555555555554443
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00025 Score=63.26 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=60.8
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC-CCChHHHHHHHHHHhhCCCccEEEeeCC-cCCHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIAR 437 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 437 (588)
.++.+|-+++.|..+|++.+ ..++.++.|.+.+| .+.|.+++.+... .++|+.|+|++| +||+.|...+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L----~~l~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL----RDLRSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHH----hccchhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHHH
Confidence 57788888888887776544 67778888888887 6777776666652 378888888887 788887666665
Q ss_pred HHhcCCCcCEEECcCC
Q 007838 438 VLKDNSVITSLDLAYN 453 (588)
Q Consensus 438 ~l~~~~~L~~L~Ls~n 453 (588)
. ++|+.|.+.+-
T Consensus 175 l----knLr~L~l~~l 186 (221)
T KOG3864|consen 175 L----KNLRRLHLYDL 186 (221)
T ss_pred h----hhhHHHHhcCc
Confidence 5 78888877654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00022 Score=66.60 Aligned_cols=102 Identities=16% Similarity=0.071 Sum_probs=59.8
Q ss_pred CCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCc
Q 007838 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGL 522 (588)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 522 (588)
.+.+.|++-||.++|.. .+..++.|+.|.|+-|.|+... -+..|++|++|+|..|.|.+.
T Consensus 19 ~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sl-------- 78 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESL-------- 78 (388)
T ss_pred HHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccH--------
Confidence 45566777777776642 2244567777777777766542 133447777777777777655
Q ss_pred hhhhhhHhhhhcccchhhhhccch---hHHHHHHHHHhhhhccceee
Q 007838 523 SFFHSAIYSLKHMLFYSLCINYLQ---GAKCLAQSFKVVNEALTSID 566 (588)
Q Consensus 523 ~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~l~~~~~~~~~~L~~L~ 566 (588)
.-..-+.++|+|+.|.|.-|--. |..+-...+..+ ++|+.||
T Consensus 79 -dEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 79 -DELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred -HHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 11244556777777777766543 333344445544 6666665
No 68
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.12 E-value=0.00013 Score=72.90 Aligned_cols=335 Identities=16% Similarity=0.100 Sum_probs=189.0
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhc--CCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGY--NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~--~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
..++.++|.-|.+..+....+...... .+.+++++++.|.+.++...++..- .--+.+..+..++..+..++
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~l~ 208 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISKLL 208 (553)
T ss_pred ccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHHhh
Confidence 446777777777766655544433322 4567888888888776654444322 11266667776666544443
Q ss_pred HHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHH--hhCCCcceeecCCCCCChh
Q 007838 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL--LENSTIRSLHLNGNYGGAL 317 (588)
Q Consensus 240 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~~~ 317 (588)
.- ..-..+.+++++.|...+.... +.........+++++.+...+.-+ .+...+ ..-.+++..+++.|.....
T Consensus 209 ~q-sg~~~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD---~l~~~l~~g~~tkl~~~kls~ng~s~s 283 (553)
T KOG4242|consen 209 IQ-SGRLWLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLD---LLTSPLAAGRTTKLTFGKLSRNGTSPS 283 (553)
T ss_pred hh-hccccccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchh---hcccccccccccccchhhhccCCCCcc
Confidence 11 1134577788887765543222 222233334577777777655421 111111 1234666667666543211
Q ss_pred ----HHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCC-CceEEEccCCCCChhhHHHHHHHHhcCCCCcEE
Q 007838 318 ----GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG-KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392 (588)
Q Consensus 318 ----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 392 (588)
+....-+.+..-+++ +|++.++...++....+...+..+-+ .=-.+|+..|...+..+ + ..-.+-..+++|
T Consensus 284 kg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v--l-eaci~g~R~q~l 359 (553)
T KOG4242|consen 284 KGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV--L-EACIFGQRVQVL 359 (553)
T ss_pred cccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch--h-hccccceeeeEe
Confidence 111222223334566 78888887777777766555543322 22345666665554321 1 111122348888
Q ss_pred EccCCCCChHHHHHHHHHHhhCCCccEEEeeCCc---CCHHHHHHHHHHHh--cCCCcCEEECcCCCCChHHHHHHHHHH
Q 007838 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN---IHSKGASAIARVLK--DNSVITSLDLAYNPIGADGAKALSEVL 467 (588)
Q Consensus 393 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (588)
++..|.+..++.... .++..+.++.+++..-. +.+.+.....-... ..--+..+.++.|+.... ...+...+
T Consensus 360 ~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~in~l 436 (553)
T KOG4242|consen 360 LQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAINKL 436 (553)
T ss_pred ecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHHHhh
Confidence 888887776654433 34556777777776532 22222222221221 224577788888877643 34444555
Q ss_pred hhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
...+.+..|++++|...+.+..-+.+.+..+.++..+..+.|...+.
T Consensus 437 ~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~ 483 (553)
T KOG4242|consen 437 LSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDP 483 (553)
T ss_pred ccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcccc
Confidence 66678888888888888888777777777777888888888877765
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.96 E-value=0.00048 Score=61.48 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=88.4
Q ss_pred ccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHh
Q 007838 417 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496 (588)
Q Consensus 417 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 496 (588)
=+.++|.+.++...+ .+... ..+...+||++|.+... ..+...+.|.+|.+++|.|+...+.-- .+
T Consensus 21 e~e~~LR~lkip~ie--nlg~~---~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~-~~-- 86 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGAT---LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLD-TF-- 86 (233)
T ss_pred ccccccccccccchh--hcccc---ccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchh-hh--
Confidence 457777777765432 12222 15677889999977543 344566889999999999988765533 33
Q ss_pred cCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH-HHHHHHHHhhhhccceeeccCC
Q 007838 497 YNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA-KCLAQSFKVVNEALTSIDLAFN 570 (588)
Q Consensus 497 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~~~~~~~~~L~~L~ls~N 570 (588)
.++|..|.|.+|.|... +..+.+..||.|++|.+-+|..+.. .+-...+..+ ++|+.||++.=
T Consensus 87 -~p~l~~L~LtnNsi~~l---------~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl-p~l~~LDF~kV 150 (233)
T KOG1644|consen 87 -LPNLKTLILTNNSIQEL---------GDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL-PSLRTLDFQKV 150 (233)
T ss_pred -ccccceEEecCcchhhh---------hhcchhccCCccceeeecCCchhcccCceeEEEEec-CcceEeehhhh
Confidence 28899999999988755 3346788899999999999987631 1222334444 78899888754
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.94 E-value=0.0012 Score=66.83 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=48.2
Q ss_pred HHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCC-CCChHHH
Q 007838 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGA 460 (588)
Q Consensus 382 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 460 (588)
-+..+.++++|++++|.+.. ++. + ..+|++|.+++|.--. .++..+. ++|+.|++++| .+..
T Consensus 47 r~~~~~~l~~L~Is~c~L~s-----LP~-L--P~sLtsL~Lsnc~nLt----sLP~~LP--~nLe~L~Ls~Cs~L~s--- 109 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES-----LPV-L--PNELTEITIENCNNLT----TLPGSIP--EGLEKLTVCHCPEISG--- 109 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc-----cCC-C--CCCCcEEEccCCCCcc----cCCchhh--hhhhheEccCcccccc---
Confidence 35567889999999987765 331 1 2469999998863211 1222221 57888998887 4431
Q ss_pred HHHHHHHhhCCCccEEEcccCCC
Q 007838 461 KALSEVLKFHGNINTLKLGWCQI 483 (588)
Q Consensus 461 ~~l~~~l~~~~~L~~L~L~~n~i 483 (588)
+. ..|+.|++.++..
T Consensus 110 --LP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 110 --LP------ESVRSLEIKGSAT 124 (426)
T ss_pred --cc------cccceEEeCCCCC
Confidence 21 4678888876554
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.00065 Score=60.71 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=45.3
Q ss_pred CccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCC-CCChHHHHHHHHHHhhCCCccEEEcccCC-CChhHHHHHHH
Q 007838 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVAD 493 (588)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 493 (588)
.++.+|-+++.|..+|...+... +.|+.|.+.+| .++|.+.+.+.. ..++|+.|+|++|. ||+.+...+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHH
Confidence 45555656666655555444333 55666666555 355555555544 22566666666553 66666655555
Q ss_pred HHhcCCcccEEEeec
Q 007838 494 MLRYNNTISILDLRA 508 (588)
Q Consensus 494 ~l~~~~~L~~L~L~~ 508 (588)
+ ++|+.|.|.+
T Consensus 175 l----knLr~L~l~~ 185 (221)
T KOG3864|consen 175 L----KNLRRLHLYD 185 (221)
T ss_pred h----hhhHHHHhcC
Confidence 5 5666665554
No 72
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.63 E-value=0.0059 Score=58.86 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=87.6
Q ss_pred HHhcCCCCceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHH
Q 007838 353 GLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431 (588)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 431 (588)
.+..+-+.++.++++++ .|...-...+..++......+.+.+.+...++.....++..++.+.+|++|++.+|.|++.+
T Consensus 192 ri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~g 271 (353)
T KOG3735|consen 192 RIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLG 271 (353)
T ss_pred HHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHH
Confidence 33455677888888765 45555566677777777788888888877777777777777777888888888888888888
Q ss_pred HHHHHHHHhcCCCcCEEECcCC--CCChHHHHHHHHHHhhCCCccEEEc
Q 007838 432 ASAIARVLKDNSVITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKL 478 (588)
Q Consensus 432 ~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~L 478 (588)
+.++..++..+.+|.++...+- -++......+...+..+.+|-.+-+
T Consensus 272 i~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy 320 (353)
T KOG3735|consen 272 IMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGY 320 (353)
T ss_pred HHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccccc
Confidence 8888888777777777765432 2444444556666666655555533
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.00089 Score=62.37 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHH-HHHHHHHhhhhccceeec
Q 007838 498 NNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAK-CLAQSFKVVNEALTSIDL 567 (588)
Q Consensus 498 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~~~~~~~~~L~~L~l 567 (588)
+++|++|++++|+|.+. .-...+..+.+|..|++.+|..++.. +-...+..+ ++|+.||-
T Consensus 90 ~P~l~~l~ls~Nki~~l---------stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll-~~L~~LD~ 150 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDL---------STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL-PSLKYLDG 150 (260)
T ss_pred CCceeEEeecCCccccc---------cccchhhhhcchhhhhcccCCccccccHHHHHHHHh-hhhccccc
Confidence 35555555555555532 11233444555555555555543311 122223333 66666654
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.00075 Score=62.88 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=7.2
Q ss_pred CCccEEEeeCCcCC
Q 007838 415 RTITTIDLGGNNIH 428 (588)
Q Consensus 415 ~~L~~L~Ls~n~i~ 428 (588)
++|++|++++|+|.
T Consensus 91 P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIK 104 (260)
T ss_pred CceeEEeecCCccc
Confidence 55555555555544
No 75
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.28 E-value=0.025 Score=54.63 Aligned_cols=92 Identities=26% Similarity=0.325 Sum_probs=45.3
Q ss_pred CCCCEEEccCC-CCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHH
Q 007838 330 KSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 408 (588)
Q Consensus 330 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 408 (588)
+.++.+++.++ .|...-+..+..++. .....+...+.+...++.....++..+..++.|++|++.+|.|+..|+-.+.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~-~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALK-NNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHh-cCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 44555555444 444444444444444 2234444444444444444444445555555555555555555555555555
Q ss_pred HHHhhCCCccEEEe
Q 007838 409 DALKQNRTITTIDL 422 (588)
Q Consensus 409 ~~l~~~~~L~~L~L 422 (588)
.++..+.+|..+..
T Consensus 277 ~al~~n~tl~el~~ 290 (353)
T KOG3735|consen 277 RALQSNKSLTELKN 290 (353)
T ss_pred HHHhccchhhHhhh
Confidence 55555555554443
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.91 E-value=0.013 Score=34.75 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=12.5
Q ss_pred CCcCEEECcCCCCChHHHHHHHHH
Q 007838 443 SVITSLDLAYNPIGADGAKALSEV 466 (588)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (588)
++|++|+|++|.|++.|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 345555555555555555555544
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.91 E-value=0.0015 Score=37.30 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.3
Q ss_pred hccceeeccCCccccCcccccc
Q 007838 560 EALTSIDLAFNEIRVSNIIFFP 581 (588)
Q Consensus 560 ~~L~~L~ls~N~i~~~~~~~l~ 581 (588)
++|++|||++|.|+++|+.+|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 6799999999999999988775
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.77 E-value=0.016 Score=34.39 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=11.8
Q ss_pred CCcEEEccCCCCChHHHHHHHHHH
Q 007838 388 SLLWINLYMNDIGDEGAEKIADAL 411 (588)
Q Consensus 388 ~L~~L~L~~n~l~~~~~~~l~~~l 411 (588)
+|++|+|++|.+++.|+..+++++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHHh
Confidence 445555555555555554444443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.44 E-value=0.01 Score=33.77 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=6.3
Q ss_pred CcCEEECcCCCCChHHHH
Q 007838 444 VITSLDLAYNPIGADGAK 461 (588)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~ 461 (588)
+|+.|+|++|.|+++++.
T Consensus 3 ~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGAS 20 (24)
T ss_dssp T-SEEE-TSSBEHHHHHH
T ss_pred CCCEEEccCCcCCHHHHH
Confidence 333444444444333333
No 80
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.68 E-value=0.04 Score=56.00 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=81.1
Q ss_pred HHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCC-CChHHHHHHHHHHhhCCCccEEEcccC-CCC
Q 007838 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVLKFHGNINTLKLGWC-QIG 484 (588)
Q Consensus 407 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~ 484 (588)
+..-+..+.+++.|++++|.++.. +. + -++|+.|++++|. ++. +.+.+ ..+|++|++++| .+.
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sL-----P~-L--P~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESL-----PV-L--PNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCccc-----CC-C--CCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCccccc
Confidence 444466679999999999987743 21 1 1469999998863 321 12222 157999999998 453
Q ss_pred hhHHHHHHHHHhcCCcccEEEeecCCCCc--ccccCCCCchhh------hhhHh-hh-hcccchhhhhccchhHHHHHHH
Q 007838 485 ASGAEFVADMLRYNNTISILDLRANGLRD--EVCSGCNGLSFF------HSAIY-SL-KHMLFYSLCINYLQGAKCLAQS 554 (588)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~------~~~~~-~l-~~L~~L~Ls~n~l~~~~~l~~~ 554 (588)
.. ..+|+.|+++++.... .+|.++..|..- ...+. .+ ++|++|++++|.... ++..
T Consensus 109 sL-----------P~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~---LP~~ 174 (426)
T PRK15386 109 GL-----------PESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII---LPEK 174 (426)
T ss_pred cc-----------ccccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc---Cccc
Confidence 21 2678999998876543 234443333310 00000 11 479999999887543 2222
Q ss_pred HHhhhhccceeeccCC
Q 007838 555 FKVVNEALTSIDLAFN 570 (588)
Q Consensus 555 ~~~~~~~L~~L~ls~N 570 (588)
+ ..+|+.|+++.|
T Consensus 175 L---P~SLk~L~ls~n 187 (426)
T PRK15386 175 L---PESLQSITLHIE 187 (426)
T ss_pred c---cccCcEEEeccc
Confidence 2 278999999876
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.58 E-value=0.067 Score=29.63 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=9.6
Q ss_pred cccEEEeecCCCC
Q 007838 500 TISILDLRANGLR 512 (588)
Q Consensus 500 ~L~~L~L~~n~l~ 512 (588)
+|++|||++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677777777777
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.13 E-value=0.18 Score=29.25 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=6.8
Q ss_pred CCcEEEccCC-CCChHHH
Q 007838 388 SLLWINLYMN-DIGDEGA 404 (588)
Q Consensus 388 ~L~~L~L~~n-~l~~~~~ 404 (588)
+|++|+|++| .++|.|+
T Consensus 3 ~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 3 NLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCEeCCCCCCCcCHHHH
Confidence 3444444443 2444433
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.82 E-value=0.18 Score=29.26 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=9.8
Q ss_pred CCccEEEeeCC-cCCHHHHHHH
Q 007838 415 RTITTIDLGGN-NIHSKGASAI 435 (588)
Q Consensus 415 ~~L~~L~Ls~n-~i~~~~~~~l 435 (588)
++|++|+|++| +|++.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 34455555554 3454444433
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.73 E-value=0.27 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=8.1
Q ss_pred ccceeeccCCcccc
Q 007838 561 ALTSIDLAFNEIRV 574 (588)
Q Consensus 561 ~L~~L~ls~N~i~~ 574 (588)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 57888888887754
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.62 E-value=3.5 Score=43.20 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=32.8
Q ss_pred cCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC--CCChHHHHHHHHHHhhCCCccEEEeeCCcCC
Q 007838 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (588)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (588)
.+.+.+..++|++|.+-+.. .+...-...|+|+.|+|++| .+... .++.. + ....|++|-+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~~--~el~K-~-k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISSE--SELDK-L-KGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcch--hhhhh-h-cCCCHHHeeecCCccc
Confidence 44455666666666544421 13333344566666666666 33322 11111 1 1245666666666654
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.67 E-value=3.2 Score=43.45 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=18.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCC
Q 007838 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN 228 (588)
Q Consensus 190 ~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 228 (588)
+.+..++|++|++-. ++.+..+-...|+|++|+|++|
T Consensus 218 p~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhc--hhhhhHHHHhcchhheeecccc
Confidence 455555555555432 2334444444455555555555
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.33 E-value=1.6 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=14.1
Q ss_pred hccceeeccCCccccCccccc
Q 007838 560 EALTSIDLAFNEIRVSNIIFF 580 (588)
Q Consensus 560 ~~L~~L~ls~N~i~~~~~~~l 580 (588)
++|+.|+|++|.|+.....++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 457788888887776554443
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.33 E-value=1.6 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=14.1
Q ss_pred hccceeeccCCccccCccccc
Q 007838 560 EALTSIDLAFNEIRVSNIIFF 580 (588)
Q Consensus 560 ~~L~~L~ls~N~i~~~~~~~l 580 (588)
++|+.|+|++|.|+.....++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 457788888887776554443
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=67.55 E-value=1.4 Score=37.12 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=52.3
Q ss_pred HhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccC
Q 007838 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSG 518 (588)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 518 (588)
+..|++|+.+.+..+ +...+. ..+..+.+|+.+.+..+ +...+...+. .+++|+.+.+.+ .+...
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~----~~F~~~~~l~~i~~~~~-~~~i~~~~F~----~~~~l~~i~~~~-~~~~i---- 72 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGE----NAFSNCTSLKSINFPNN-LTSIGDNAFS----NCKSLESITFPN-NLKSI---- 72 (129)
T ss_dssp TTT-TT--EEEETST---EE-T----TTTTT-TT-SEEEESST-TSCE-TTTTT----T-TT-EEEEETS-TT-EE----
T ss_pred HhCCCCCCEEEECCC-eeEeCh----hhccccccccccccccc-ccccceeeee----cccccccccccc-ccccc----
Confidence 445678898888753 332211 22345578999998774 6555444443 347899999965 43322
Q ss_pred CCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccC
Q 007838 519 CNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF 569 (588)
Q Consensus 519 ~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~ 569 (588)
-...|..+++|+.+++..+ ++.. -...+.. ..|+.+.+..
T Consensus 73 ------~~~~F~~~~~l~~i~~~~~-~~~i--~~~~f~~--~~l~~i~~~~ 112 (129)
T PF13306_consen 73 ------GDNAFSNCTNLKNIDIPSN-ITEI--GSSSFSN--CNLKEINIPS 112 (129)
T ss_dssp -------TTTTTT-TTECEEEETTT--BEE--HTTTTTT---T--EEE-TT
T ss_pred ------ccccccccccccccccCcc-ccEE--chhhhcC--CCceEEEECC
Confidence 2356777889999999765 3322 1122332 3588888765
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=67.20 E-value=0.51 Score=39.88 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=21.5
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcC
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 452 (588)
..+.+|+.+.+..+ +...+ ..++..+.+|+.+.+.++ +...+. .++..++.|+.+.+..
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~----~~~F~~~~~l~~i~~~~~-~~~i~~----~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIG----ENAFSNCTSLKSINFPNN-LTSIGD----NAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETST---EE-----TTTTTT-TT-SEEEESST-TSCE-T----TTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECCC-eeEeC----hhhccccccccccccccc-ccccce----eeeecccccccccccc
Confidence 44556666666532 22211 112334456666666553 332211 1233345566666543
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=66.68 E-value=0.42 Score=44.16 Aligned_cols=83 Identities=14% Similarity=-0.005 Sum_probs=48.4
Q ss_pred CCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCc
Q 007838 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGL 522 (588)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 522 (588)
...+.||++.|.+-..+ ..++....+..|+++.|+|... ++.+... ..+..+++.+|+....
T Consensus 42 kr~tvld~~s~r~vn~~-----~n~s~~t~~~rl~~sknq~~~~-~~d~~q~----~e~~~~~~~~n~~~~~-------- 103 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLG-----KNFSILTRLVRLDLSKNQIKFL-PKDAKQQ----RETVNAASHKNNHSQQ-------- 103 (326)
T ss_pred ceeeeehhhhhHHHhhc-----cchHHHHHHHHHhccHhhHhhC-hhhHHHH----HHHHHHHhhccchhhC--------
Confidence 66677777776433221 1112224566677777665433 1222222 5566677777776655
Q ss_pred hhhhhhHhhhhcccchhhhhccch
Q 007838 523 SFFHSAIYSLKHMLFYSLCINYLQ 546 (588)
Q Consensus 523 ~~~~~~~~~l~~L~~L~Ls~n~l~ 546 (588)
|.+++..+.++++++-+|-+.
T Consensus 104 ---p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 ---PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ---CccccccCCcchhhhccCcch
Confidence 777777777777777777654
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.93 E-value=4.6 Score=23.39 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.9
Q ss_pred hccceeeccCCccccC
Q 007838 560 EALTSIDLAFNEIRVS 575 (588)
Q Consensus 560 ~~L~~L~ls~N~i~~~ 575 (588)
..|+.|++++|+|+..
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4689999999999653
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=56.94 E-value=0.4 Score=44.26 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHH
Q 007838 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKC 550 (588)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 550 (588)
...+.||++.|++...+.. +..+ +.|..|+++.|++- ++|..++++..+..+++.+|..+.
T Consensus 42 kr~tvld~~s~r~vn~~~n-~s~~----t~~~rl~~sknq~~-----------~~~~d~~q~~e~~~~~~~~n~~~~--- 102 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKN-FSIL----TRLVRLDLSKNQIK-----------FLPKDAKQQRETVNAASHKNNHSQ--- 102 (326)
T ss_pred ceeeeehhhhhHHHhhccc-hHHH----HHHHHHhccHhhHh-----------hChhhHHHHHHHHHHHhhccchhh---
Confidence 3455566665554333211 1122 55556666655554 235666666666666666665544
Q ss_pred HHHHHHhhhhccceeeccCCcc
Q 007838 551 LAQSFKVVNEALTSIDLAFNEI 572 (588)
Q Consensus 551 l~~~~~~~~~~L~~L~ls~N~i 572 (588)
.+.+++.. +.++.+++-+|++
T Consensus 103 ~p~s~~k~-~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 103 QPKSQKKE-PHPKKNEQKKTEF 123 (326)
T ss_pred CCcccccc-CCcchhhhccCcc
Confidence 33334444 5566666665554
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=50.43 E-value=9.2 Score=22.15 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=12.4
Q ss_pred hccceeeccCCcccc
Q 007838 560 EALTSIDLAFNEIRV 574 (588)
Q Consensus 560 ~~L~~L~ls~N~i~~ 574 (588)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 568899999998876
No 95
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=33.79 E-value=28 Score=28.99 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=5.7
Q ss_pred HHHHHhhCCCccE
Q 007838 463 LSEVLKFHGNINT 475 (588)
Q Consensus 463 l~~~l~~~~~L~~ 475 (588)
+..++..+..|+.
T Consensus 53 m~~mF~~~~~l~~ 65 (120)
T PF03382_consen 53 MSGMFAGCSSLNQ 65 (120)
T ss_pred HHHHHhhhhhcCC
Confidence 3444444444444
No 96
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=20.76 E-value=72 Score=26.50 Aligned_cols=95 Identities=8% Similarity=0.055 Sum_probs=53.9
Q ss_pred HHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccc
Q 007838 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEV 515 (588)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 515 (588)
..++..|+.++ .++..-. ...+..+..++..+..| ..+|+.-.. ..+..+..++..|+.|.. +|++-.....
T Consensus 4 ~~~F~~~~~l~-~~i~~~d--ts~vt~m~~mF~~~~~l-~~~l~~w~~--s~vt~m~~mF~~~~~l~~-dls~w~~s~v- 75 (120)
T PF03382_consen 4 SSMFANCTNLN-IDISNWD--TSNVTDMSYMFYGCTSL-NQDLSNWDT--SNVTNMSGMFAGCSSLNQ-DLSNWDTSNV- 75 (120)
T ss_pred HHHHHhchhcc-CCccccc--cccceeHHHHhhcchhc-cCChhhhcc--hhheeHHHHHhhhhhcCC-Cccccccccc-
Confidence 34555666666 5664432 23344466666666666 334544332 345666777777788888 7765444322
Q ss_pred ccCCCCchhhhhhHhhhhcccchhhhhccch
Q 007838 516 CSGCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (588)
Q Consensus 516 ~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~ 546 (588)
...-..|.++..| ..+|++=++.
T Consensus 76 -------~~~~~mF~~~~~l-~~~l~~wn~~ 98 (120)
T PF03382_consen 76 -------TNMSNMFSGCSSL-NQDLSNWNTS 98 (120)
T ss_pred -------ccHHHHHhhhHHc-CCchhhcccc
Confidence 3445667777777 5666543333
Done!