Query 007838
Match_columns 588
No_of_seqs 439 out of 3893
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-43 4E-48 375.6 38.8 414 154-574 20-441 (461)
2 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-42 7.4E-47 365.9 39.8 410 162-581 3-419 (461)
3 2ca6_A RAN GTPase-activating p 100.0 1.1E-31 3.9E-36 276.7 29.2 307 199-509 13-340 (386)
4 3ogk_B Coronatine-insensitive 100.0 1.4E-31 4.8E-36 292.2 30.1 392 152-581 102-534 (592)
5 2ca6_A RAN GTPase-activating p 100.0 3.6E-31 1.2E-35 273.0 30.0 296 172-468 14-330 (386)
6 2p1m_B Transport inhibitor res 100.0 1.6E-30 5.4E-35 283.9 28.6 385 153-580 96-526 (594)
7 3goz_A Leucine-rich repeat-con 100.0 3.6E-30 1.2E-34 262.9 24.1 297 167-467 3-308 (362)
8 3goz_A Leucine-rich repeat-con 100.0 4.2E-30 1.4E-34 262.4 21.8 270 217-514 21-299 (362)
9 3rgz_A Protein brassinosteroid 100.0 2.7E-34 9.2E-39 322.1 -12.0 361 161-575 268-719 (768)
10 3rgz_A Protein brassinosteroid 100.0 8.1E-34 2.8E-38 318.2 -11.7 380 154-586 239-706 (768)
11 3ogk_B Coronatine-insensitive 100.0 1.1E-28 3.9E-33 269.1 27.7 387 155-580 66-508 (592)
12 2p1m_B Transport inhibitor res 100.0 8.1E-28 2.8E-32 262.4 29.5 375 153-572 121-543 (594)
13 1o6v_A Internalin A; bacterial 100.0 2.8E-29 9.6E-34 265.4 16.1 330 158-578 64-393 (466)
14 4fmz_A Internalin; leucine ric 100.0 6.3E-29 2.1E-33 252.4 16.7 285 160-514 42-326 (347)
15 3t6q_A CD180 antigen; protein- 100.0 1.1E-31 3.6E-36 293.9 -6.7 65 160-232 103-167 (606)
16 3t6q_A CD180 antigen; protein- 100.0 1.5E-31 5.1E-36 292.7 -6.1 114 158-287 77-192 (606)
17 4fmz_A Internalin; leucine ric 100.0 1.1E-28 3.6E-33 250.8 15.2 304 189-573 43-346 (347)
18 4eco_A Uncharacterized protein 100.0 7.5E-32 2.6E-36 295.5 -9.0 363 157-581 201-608 (636)
19 1o6v_A Internalin A; bacterial 100.0 2.3E-28 7.9E-33 258.4 17.2 327 160-577 44-370 (466)
20 3v47_A TOLL-like receptor 5B a 100.0 7.6E-31 2.6E-35 276.8 -2.5 370 162-576 30-411 (455)
21 2z7x_B TOLL-like receptor 1, v 100.0 5E-30 1.7E-34 275.3 1.3 376 157-575 40-483 (520)
22 4eco_A Uncharacterized protein 100.0 3.3E-31 1.1E-35 290.4 -8.9 346 182-578 198-584 (636)
23 2z81_A CD282 antigen, TOLL-lik 100.0 3E-29 1E-33 271.1 6.2 113 160-287 48-161 (549)
24 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-31 1.9E-35 288.3 -8.1 117 158-289 52-168 (606)
25 4ecn_A Leucine-rich repeat pro 99.9 2.7E-30 9.2E-35 288.3 -3.1 369 157-582 443-849 (876)
26 3vq2_A TLR4, TOLL-like recepto 99.9 9E-31 3.1E-35 286.5 -7.7 368 158-573 76-558 (606)
27 4ecn_A Leucine-rich repeat pro 99.9 2.9E-30 9.9E-35 288.0 -4.9 349 182-578 440-824 (876)
28 3v47_A TOLL-like receptor 5B a 99.9 2.8E-29 9.5E-34 264.9 -2.0 365 165-582 13-393 (455)
29 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-29 4E-34 281.5 -5.2 380 157-579 68-523 (680)
30 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-28 5.4E-33 265.5 3.2 369 162-575 26-466 (549)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-29 1.4E-33 270.5 -2.3 364 159-574 73-511 (562)
32 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-28 5.9E-33 263.3 2.5 373 162-581 21-465 (520)
33 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-27 4.9E-32 250.5 8.3 314 159-574 39-353 (457)
34 1ziw_A TOLL-like receptor 3; i 99.9 5.5E-29 1.9E-33 276.1 -3.1 377 158-576 45-446 (680)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-29 6.6E-34 285.6 -7.4 118 158-286 69-186 (844)
36 2z63_A TOLL-like receptor 4, v 99.9 4.8E-30 1.6E-34 278.7 -14.7 139 158-315 48-190 (570)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.6E-29 3.3E-33 267.7 -4.6 376 162-581 52-494 (562)
38 2z63_A TOLL-like receptor 4, v 99.9 2.4E-29 8.2E-34 273.1 -10.6 188 357-575 345-533 (570)
39 2id5_A Lingo-1, leucine rich r 99.9 1.9E-28 6.6E-33 260.0 -3.8 322 165-548 14-335 (477)
40 2id5_A Lingo-1, leucine rich r 99.9 3.9E-28 1.3E-32 257.6 -2.6 321 193-574 14-334 (477)
41 3j0a_A TOLL-like receptor 5; m 99.9 2E-28 6.9E-33 277.3 -5.9 369 159-574 45-465 (844)
42 3o6n_A APL1; leucine-rich repe 99.9 1.7E-27 5.7E-32 245.9 1.1 312 160-548 43-354 (390)
43 3o6n_A APL1; leucine-rich repe 99.9 9.2E-27 3.1E-31 240.4 3.0 314 189-579 44-358 (390)
44 3oja_B Anopheles plasmodium-re 99.9 7.1E-26 2.4E-30 246.6 3.3 312 160-548 49-360 (597)
45 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-25 4.4E-30 235.7 3.1 315 158-573 60-387 (457)
46 3oja_B Anopheles plasmodium-re 99.9 1.8E-25 6.1E-30 243.5 3.5 312 189-577 50-362 (597)
47 4g8a_A TOLL-like receptor 4; l 99.9 8.2E-26 2.8E-30 248.4 -5.5 134 163-315 53-186 (635)
48 3un9_A NLR family member X1; l 99.9 9.9E-22 3.4E-26 199.9 22.7 209 275-486 73-285 (372)
49 1xku_A Decorin; proteoglycan, 99.9 7.5E-25 2.6E-29 220.6 -1.7 127 191-343 32-158 (330)
50 2ast_B S-phase kinase-associat 99.9 9.1E-22 3.1E-26 198.6 19.5 181 247-454 48-233 (336)
51 1xku_A Decorin; proteoglycan, 99.9 6.1E-25 2.1E-29 221.3 -4.5 222 163-428 32-253 (330)
52 2z80_A TOLL-like receptor 2, v 99.9 9.3E-24 3.2E-28 214.7 2.4 286 189-549 30-317 (353)
53 3un9_A NLR family member X1; l 99.9 1.1E-20 3.9E-25 192.1 24.3 212 160-374 70-285 (372)
54 1jl5_A Outer protein YOPM; leu 99.9 1.5E-22 5.1E-27 212.2 10.1 317 162-577 111-433 (454)
55 2ast_B S-phase kinase-associat 99.9 1.2E-20 4.1E-25 190.4 21.5 255 220-516 49-310 (336)
56 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-25 1.5E-29 220.4 -11.2 205 326-571 97-302 (313)
57 2z80_A TOLL-like receptor 2, v 99.9 3.7E-23 1.3E-27 210.2 2.4 259 160-456 29-290 (353)
58 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-24 4.8E-29 238.6 -8.8 191 358-573 370-580 (635)
59 2ft3_A Biglycan; proteoglycan, 99.9 6.5E-25 2.2E-29 221.3 -11.0 275 219-544 55-331 (332)
60 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.2E-28 219.8 -1.4 314 162-574 71-410 (454)
61 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-24 4E-29 219.4 -11.5 298 219-571 34-331 (332)
62 1ogq_A PGIP-2, polygalacturona 99.8 2.5E-24 8.7E-29 214.8 -10.1 252 218-547 50-306 (313)
63 3o53_A Protein LRIM1, AGAP0063 99.8 3.9E-23 1.3E-27 206.7 -4.6 260 219-543 11-272 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-22 8E-27 201.0 1.1 244 268-569 28-271 (317)
65 1wwl_A Monocyte differentiatio 99.8 3.4E-23 1.2E-27 206.6 -7.3 212 329-576 94-312 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.8 6.4E-21 2.2E-25 206.0 6.6 260 162-548 40-299 (622)
67 2z66_A Variable lymphocyte rec 99.8 7.2E-23 2.5E-27 203.8 -8.3 195 357-580 99-294 (306)
68 2z66_A Variable lymphocyte rec 99.8 4E-23 1.4E-27 205.7 -10.3 234 302-575 28-263 (306)
69 3g06_A SSPH2 (leucine-rich rep 99.8 5.8E-21 2E-25 206.4 4.2 224 274-580 81-304 (622)
70 4fcg_A Uncharacterized protein 99.8 4.3E-22 1.5E-26 199.9 -4.8 136 384-547 180-315 (328)
71 1wwl_A Monocyte differentiatio 99.8 4.6E-22 1.6E-26 198.4 -5.3 191 327-547 118-310 (312)
72 4fcg_A Uncharacterized protein 99.8 7E-22 2.4E-26 198.3 -4.5 181 359-575 127-316 (328)
73 4glp_A Monocyte differentiatio 99.8 2.3E-21 7.7E-26 193.3 -0.8 168 385-576 143-310 (310)
74 3zyj_A Leucine-rich repeat-con 99.8 8.5E-22 2.9E-26 206.4 -4.1 248 247-546 44-292 (440)
75 1ozn_A Reticulon 4 receptor; N 99.8 4.2E-21 1.4E-25 188.9 0.8 252 276-577 13-265 (285)
76 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-21 5.8E-26 191.8 -2.4 249 249-548 14-263 (285)
77 3oja_A Leucine-rich immune mol 99.8 3E-21 1E-25 204.3 -1.4 236 275-568 35-270 (487)
78 3zyi_A Leucine-rich repeat-con 99.8 2.5E-21 8.6E-26 203.5 -3.2 247 248-546 56-303 (452)
79 3zyi_A Leucine-rich repeat-con 99.8 1E-20 3.5E-25 198.8 -2.1 249 220-514 56-305 (452)
80 3zyj_A Leucine-rich repeat-con 99.8 9.8E-21 3.3E-25 198.3 -2.4 249 220-514 45-294 (440)
81 3oja_A Leucine-rich immune mol 99.8 1.3E-20 4.5E-25 199.4 -2.0 193 299-541 77-270 (487)
82 1io0_A Tropomodulin; LRR prote 99.8 1E-17 3.5E-22 153.0 16.7 128 359-486 36-166 (185)
83 1io0_A Tropomodulin; LRR prote 99.8 1.4E-17 4.7E-22 152.1 16.5 139 376-514 25-166 (185)
84 4glp_A Monocyte differentiatio 99.8 4.5E-20 1.5E-24 183.9 -0.3 38 164-202 66-103 (310)
85 1h6u_A Internalin H; cell adhe 99.8 7.3E-19 2.5E-23 174.7 7.3 193 300-547 39-231 (308)
86 1h6u_A Internalin H; cell adhe 99.7 2.5E-18 8.4E-23 170.9 10.0 192 274-514 41-232 (308)
87 2z62_A TOLL-like receptor 4, v 99.7 1.9E-19 6.4E-24 176.2 -0.8 211 302-548 28-239 (276)
88 3rfs_A Internalin B, repeat mo 99.7 2E-18 7E-23 168.4 2.7 198 301-548 40-237 (272)
89 2z62_A TOLL-like receptor 4, v 99.7 6.9E-19 2.3E-23 172.2 -1.3 211 274-514 28-239 (276)
90 3rfs_A Internalin B, repeat mo 99.7 1.4E-18 4.7E-23 169.6 -1.5 220 304-578 21-240 (272)
91 1pgv_A TMD-1, tropomodulin TMD 99.7 6.6E-16 2.3E-20 139.4 15.1 134 379-512 33-170 (197)
92 2o6q_A Variable lymphocyte rec 99.7 8.3E-18 2.8E-22 163.9 2.9 159 358-546 60-218 (270)
93 2o6q_A Variable lymphocyte rec 99.7 2.8E-18 9.6E-23 167.2 -0.8 204 331-575 17-220 (270)
94 1p9a_G Platelet glycoprotein I 99.7 2.2E-18 7.6E-23 169.5 -2.2 212 299-556 7-221 (290)
95 1p9a_G Platelet glycoprotein I 99.7 1E-17 3.4E-22 164.9 1.6 227 272-543 8-234 (290)
96 1pgv_A TMD-1, tropomodulin TMD 99.7 1.7E-15 5.8E-20 136.7 15.1 124 359-482 41-168 (197)
97 1h6t_A Internalin B; cell adhe 99.6 1.3E-16 4.5E-21 157.0 5.9 171 328-547 44-214 (291)
98 1h6t_A Internalin B; cell adhe 99.6 4.3E-16 1.5E-20 153.3 7.0 172 300-514 44-215 (291)
99 3m19_A Variable lymphocyte rec 99.6 2E-17 6.8E-22 159.3 -2.8 205 330-574 14-222 (251)
100 3m19_A Variable lymphocyte rec 99.6 8.8E-17 3E-21 154.8 0.6 181 302-514 14-194 (251)
101 4ezg_A Putative uncharacterize 99.6 3.4E-16 1.2E-20 144.7 3.4 151 387-574 44-195 (197)
102 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5.2E-20 163.8 6.7 171 328-547 41-211 (605)
103 1xeu_A Internalin C; cellular 99.6 1.6E-16 5.4E-21 153.9 -1.3 166 332-547 21-186 (263)
104 4ezg_A Putative uncharacterize 99.5 2E-15 6.7E-20 139.5 4.3 150 360-547 45-195 (197)
105 2xwt_C Thyrotropin receptor; s 99.5 7.1E-17 2.4E-21 154.2 -5.9 196 331-570 32-236 (239)
106 1m9s_A Internalin B; cell inva 99.5 3.5E-15 1.2E-19 161.0 6.0 174 299-515 40-213 (605)
107 2xwt_C Thyrotropin receptor; s 99.5 1.9E-16 6.5E-21 151.2 -4.9 190 360-584 32-229 (239)
108 3cvr_A Invasion plasmid antige 99.5 6E-15 2.1E-19 157.4 3.6 65 471-548 180-245 (571)
109 3cvr_A Invasion plasmid antige 99.5 2.1E-15 7.2E-20 160.9 -1.2 193 330-581 59-251 (571)
110 2ra8_A Uncharacterized protein 99.4 1.4E-13 4.8E-18 138.5 9.4 169 325-510 167-341 (362)
111 1xeu_A Internalin C; cellular 99.4 1.4E-14 4.8E-19 140.1 0.5 168 303-514 20-187 (263)
112 2o6s_A Variable lymphocyte rec 99.4 4E-15 1.4E-19 138.7 -3.5 171 333-548 10-180 (208)
113 2ra8_A Uncharacterized protein 99.4 3.4E-13 1.2E-17 135.8 10.0 209 219-465 108-329 (362)
114 2o6s_A Variable lymphocyte rec 99.4 1.9E-14 6.4E-19 134.2 -0.4 174 305-517 10-183 (208)
115 2xot_A Amphoterin-induced prot 99.4 8.7E-15 3E-19 148.7 -2.9 183 332-549 20-205 (361)
116 2v9t_B SLIT homolog 2 protein 99.4 1.4E-14 4.8E-19 136.2 -3.2 155 360-547 12-166 (220)
117 2xot_A Amphoterin-induced prot 99.4 4.9E-14 1.7E-18 143.1 -0.2 182 304-514 20-204 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 1.7E-14 5.7E-19 135.7 -3.5 158 360-549 12-169 (220)
119 1dce_A Protein (RAB geranylger 99.4 2.8E-15 9.7E-20 160.7 -10.0 161 379-567 401-567 (567)
120 1dce_A Protein (RAB geranylger 99.4 4.4E-15 1.5E-19 159.2 -8.7 214 272-540 347-567 (567)
121 2v9t_B SLIT homolog 2 protein 99.4 2.3E-14 8E-19 134.7 -2.8 154 333-514 14-167 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 3.2E-14 1.1E-18 133.7 -2.6 156 332-514 13-168 (220)
123 3e6j_A Variable lymphocyte rec 99.3 4.3E-14 1.5E-18 133.7 -2.0 180 359-574 19-202 (229)
124 2ell_A Acidic leucine-rich nuc 99.3 2.5E-13 8.6E-18 121.8 2.2 139 415-576 24-163 (168)
125 3e6j_A Variable lymphocyte rec 99.3 1.1E-13 3.9E-18 130.8 -0.2 155 331-514 20-174 (229)
126 2je0_A Acidic leucine-rich nuc 99.3 5.4E-13 1.8E-17 117.0 3.2 132 415-569 17-149 (149)
127 1ds9_A Outer arm dynein; leuci 99.3 1.1E-13 3.8E-18 127.8 -2.5 139 410-577 43-189 (198)
128 2je0_A Acidic leucine-rich nuc 99.3 6E-13 2.1E-17 116.7 2.2 108 414-541 41-148 (149)
129 2ell_A Acidic leucine-rich nuc 99.3 3.6E-13 1.2E-17 120.8 0.7 112 414-546 48-160 (168)
130 4b8c_D Glucose-repressible alc 99.3 2.5E-13 8.7E-18 150.1 -1.4 192 329-570 172-369 (727)
131 4b8c_D Glucose-repressible alc 99.3 2.1E-13 7.2E-18 150.8 -3.1 154 246-430 173-331 (727)
132 4ay9_X Follicle-stimulating ho 99.2 1.8E-14 6.2E-19 145.7 -12.0 240 249-544 12-257 (350)
133 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-12 4.6E-17 118.0 1.3 133 385-547 17-154 (176)
134 1ds9_A Outer arm dynein; leuci 99.2 5.5E-13 1.9E-17 123.1 -3.9 82 360-455 71-152 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.2 4.4E-12 1.5E-16 114.6 1.7 134 414-574 18-154 (176)
136 1w8a_A SLIT protein; signaling 99.1 1.4E-12 4.7E-17 119.7 -3.1 132 360-513 9-140 (192)
137 1w8a_A SLIT protein; signaling 99.1 1.9E-12 6.6E-17 118.7 -3.7 135 389-551 10-144 (192)
138 3sb4_A Hypothetical leucine ri 99.1 6.3E-12 2.1E-16 125.9 -1.4 219 301-566 100-327 (329)
139 2wfh_A SLIT homolog 2 protein 99.1 5.4E-12 1.9E-16 115.7 -2.2 129 389-547 12-140 (193)
140 3sb4_A Hypothetical leucine ri 99.1 8.1E-12 2.8E-16 125.0 -1.8 286 246-584 25-321 (329)
141 4ay9_X Follicle-stimulating ho 99.1 1.1E-12 3.7E-17 132.6 -8.8 218 305-570 12-233 (350)
142 2wfh_A SLIT homolog 2 protein 99.0 2.2E-11 7.5E-16 111.6 -1.4 131 360-514 11-141 (193)
143 2o6r_A Variable lymphocyte rec 99.0 4.1E-11 1.4E-15 108.2 -0.3 65 470-548 75-139 (177)
144 2o6r_A Variable lymphocyte rec 99.0 4.6E-11 1.6E-15 107.9 -0.2 132 416-575 8-139 (177)
145 3e4g_A ATP synthase subunit S, 98.9 1.3E-09 4.6E-14 96.3 6.8 92 360-459 62-156 (176)
146 3e4g_A ATP synthase subunit S, 98.9 2.4E-09 8.2E-14 94.7 6.8 92 331-431 62-156 (176)
147 3g39_A Variable lymphocyte rec 98.8 2.9E-10 9.9E-15 101.8 -2.0 117 416-557 10-130 (170)
148 2r9u_A Variable lymphocyte rec 98.7 6.3E-10 2.1E-14 100.0 -1.9 116 416-556 13-132 (174)
149 2r9u_A Variable lymphocyte rec 98.7 2.3E-09 8E-14 96.2 1.7 107 389-514 14-120 (174)
150 3g39_A Variable lymphocyte rec 98.7 2.5E-09 8.7E-14 95.6 1.3 126 388-536 10-135 (170)
151 2ifg_A High affinity nerve gro 98.4 1.7E-08 5.9E-13 101.5 -1.6 105 418-547 11-117 (347)
152 4fdw_A Leucine rich hypothetic 98.3 8E-09 2.7E-13 105.7 -7.6 76 247-338 136-211 (401)
153 2ifg_A High affinity nerve gro 98.3 9E-08 3.1E-12 96.2 0.0 106 390-514 11-118 (347)
154 4fdw_A Leucine rich hypothetic 98.1 8.1E-08 2.8E-12 98.2 -4.4 270 245-572 112-382 (401)
155 3rw6_A Nuclear RNA export fact 98.1 7.2E-06 2.5E-10 78.0 9.1 86 468-566 167-257 (267)
156 3rw6_A Nuclear RNA export fact 98.1 6.3E-06 2.1E-10 78.4 8.2 43 357-401 168-210 (267)
157 4fs7_A Uncharacterized protein 97.8 6.7E-08 2.3E-12 99.0 -11.4 104 384-509 250-353 (394)
158 4fs7_A Uncharacterized protein 97.8 2.5E-07 8.6E-12 94.7 -7.6 217 298-570 158-376 (394)
159 4gt6_A Cell surface protein; l 97.1 8.4E-06 2.9E-10 83.3 -6.9 316 186-572 59-390 (394)
160 4gt6_A Cell surface protein; l 92.5 0.076 2.6E-06 53.6 4.0 129 326-482 261-389 (394)
161 3rfe_A Platelet glycoprotein I 88.5 0.15 5.2E-06 42.2 1.6 36 500-545 32-67 (130)
162 4h09_A Hypothetical leucine ri 88.0 0.06 2.1E-06 54.0 -1.6 130 384-543 214-343 (379)
163 3rfe_A Platelet glycoprotein I 86.0 0.17 5.8E-06 41.9 0.4 35 444-482 32-66 (130)
164 4h09_A Hypothetical leucine ri 85.0 0.093 3.2E-06 52.5 -2.0 13 186-198 65-77 (379)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.2e-43 Score=375.61 Aligned_cols=414 Identities=19% Similarity=0.221 Sum_probs=220.7
Q ss_pred HHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCC-CccEEEccCCCCCh
Q 007838 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIGD 232 (588)
Q Consensus 154 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~ 232 (588)
...++..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+...+.... +|++|++++|.+++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 33444455555566666555555555555555555555666666555555555544444333322 45566666555555
Q ss_pred HHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhh-CCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCC
Q 007838 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311 (588)
Q Consensus 233 ~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 311 (588)
.+...++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++.+...++..+..+++|++|++++
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 5555555555555556666666555555555555544332 344556666555555555555555555555566666655
Q ss_pred CCCChhHHHHHHHHhh-cCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHh-cCCCC
Q 007838 312 NYGGALGANALAKGLE-GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKSL 389 (588)
Q Consensus 312 ~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L 389 (588)
|.+++.+...+...+. ..++|++|++++|.+++.++..+...+. .+++|++|++++|.+++.++..+...+. .+++|
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 5555555444444443 2345556666555555555554444443 3345556666555555555544444333 35555
Q ss_pred cEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcC-CCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 390 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+... ++|++|++++|.+++.+...+...+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 66666655555555555555555555566666665555555555555554433 35556666665555555555555555
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhc-CCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRY-NNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
.+++|++|++++|.+++.++..+.+.+.. +++|++|+|++|.+++. +...++..+..+++|++|+|++|.+++
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~------~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS------SCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------HHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh------hHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 55556666666555555555555554443 44556666666655542 112245555555666666666665543
Q ss_pred H--HHHHHHHHhhhhccceeeccCCcccc
Q 007838 548 A--KCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 548 ~--~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
. ..+...+...+.+|+.|++.++.++.
T Consensus 413 ~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 413 AGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHHhccCCcchhheeecccccCH
Confidence 2 12222222111245555555554443
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.2e-42 Score=365.90 Aligned_cols=410 Identities=24% Similarity=0.338 Sum_probs=358.1
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
++|++|||+++.+++..+..+. ..+++|++|++++|.+++.++..+...+..+++|++|++++|.+++.+...+...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~---~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHH---HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHH---hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 5689999999999988755543 3458999999999999999999999999999999999999999998877666665
Q ss_pred HhhCC-CCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhh-CCCcceeecCCCCCChhHH
Q 007838 242 LVDNA-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGA 319 (588)
Q Consensus 242 l~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~~~~~~~~~ 319 (588)
+.... +|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++..+.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 54332 799999999999999999999999999999999999999998888888877654 5789999999999999998
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCC
Q 007838 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (588)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 399 (588)
..++..+..+++|++|++++|.+++.++..+...+....++|++|++++|.+++.+...++..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 89999999999999999999999999999998888777789999999999999999888999999999999999999999
Q ss_pred ChHHHHHHHHHHh-hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhC-CCccEEE
Q 007838 400 GDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLK 477 (588)
Q Consensus 400 ~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~ 477 (588)
++.++..+...+. .+++|++|++++|.+++.++..++..+..+++|++|++++|.+++.++..+...+... ++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 9999888887765 4789999999999999999999999999999999999999999999998898887654 6999999
Q ss_pred cccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhh-hhcccchhhhhccchh--HHHHHHH
Q 007838 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYS-LKHMLFYSLCINYLQG--AKCLAQS 554 (588)
Q Consensus 478 L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~-l~~L~~L~Ls~n~l~~--~~~l~~~ 554 (588)
+++|.++..+...+...+..+++|++|+|++|.+++. ....+...+.. +++|++|+|++|.+++ ...++..
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA------GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc------cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 9999999999999999999999999999999999876 11112223332 6799999999999984 2346666
Q ss_pred HHhhhhccceeeccCCccccCcccccc
Q 007838 555 FKVVNEALTSIDLAFNEIRVSNIIFFP 581 (588)
Q Consensus 555 ~~~~~~~L~~L~ls~N~i~~~~~~~l~ 581 (588)
+... ++|++|||++|+|+++|+..+.
T Consensus 394 l~~~-~~L~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 394 LLAN-HSLRELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp HHHC-CCCCEEECCSSSCCHHHHHHHH
T ss_pred HHhC-CCccEEECCCCCCCHHHHHHHH
Confidence 6665 8999999999999999886554
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=1.1e-31 Score=276.68 Aligned_cols=307 Identities=21% Similarity=0.283 Sum_probs=183.4
Q ss_pred cCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCC------hhHHHHHHHHHhh
Q 007838 199 ANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELLKN 272 (588)
Q Consensus 199 ~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~------~~~~~~l~~~l~~ 272 (588)
.+.+++.++..+...+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+. ..++..+...+..
T Consensus 13 ~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 13 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp ESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence 3344555555555555555555555555555555554445444555555555555554332 1234444444555
Q ss_pred CCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcC---------CCCCEEEccCCCCC
Q 007838 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN---------KSLRELHLHGNSIG 343 (588)
Q Consensus 273 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~---------~~L~~L~Ls~n~l~ 343 (588)
+++|++|+|++|.+++.+...++..+..+++|++|+|++|.++..+...+...+..+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 555666666666555555555555555556666666666655555554555544444 66667777766666
Q ss_pred hhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHH-HHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEe
Q 007838 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDL 422 (588)
Q Consensus 344 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 422 (588)
+.++..++..+. .+++|++|++++|.+++.++..+.. .+..+++|++|+|++|.+++.|...++..+..+++|++|+|
T Consensus 173 ~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 173 NGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp GGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 666665555444 3346677777777666666555555 56667777777777777776666666666666777777777
Q ss_pred eCCcCCHHHHHHHHHHHhc--CCCcCEEECcCCCCChHHHHHHHHHH-hhCCCccEEEcccCCCChhH--HHHHHHHHhc
Q 007838 423 GGNNIHSKGASAIARVLKD--NSVITSLDLAYNPIGADGAKALSEVL-KFHGNINTLKLGWCQIGASG--AEFVADMLRY 497 (588)
Q Consensus 423 s~n~i~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~ 497 (588)
++|.+++.+...++..+.. +++|+.|+|++|.|++.++..+...+ ..+++|++|++++|.++..+ ...+...+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l-- 329 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF-- 329 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH--
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh--
Confidence 7777777766666666644 67777777777777776666666665 34577777777777776665 35555554
Q ss_pred CCcccEEEeecC
Q 007838 498 NNTISILDLRAN 509 (588)
Q Consensus 498 ~~~L~~L~L~~n 509 (588)
++++.+++..+
T Consensus 330 -~~~~~~~l~~~ 340 (386)
T 2ca6_A 330 -STRGRGELDEL 340 (386)
T ss_dssp -HHHTCCEECCC
T ss_pred -hhcCcchhhhc
Confidence 33444444443
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.4e-31 Score=292.16 Aligned_cols=392 Identities=15% Similarity=0.150 Sum_probs=299.4
Q ss_pred HHHHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCC-CCHHHHHHHHHHHhcCCCccEEEccCCCC
Q 007838 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (588)
Q Consensus 152 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 230 (588)
..+..+...+++|++|+|++|.+++.....++..+. .+|++|+|++|. +++.+ +......+++|++|+|++|.+
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~ 176 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSF 176 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEEEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEE
T ss_pred HHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEECcCCCCcCHHH---HHHHHhhCCCCCEEECccccc
Confidence 345667778999999999999999988877776532 349999999986 55544 444456788999999999988
Q ss_pred ChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecC
Q 007838 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (588)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 310 (588)
++.+...+...+..+++|++|++++|.++......+...+..+++|++|++++|.+.. ++..+..+++|++|+++
T Consensus 177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEEC
T ss_pred cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhccc
Confidence 7766566677777889999999999999855566777888889999999999998743 45667778889988886
Q ss_pred CCCCC----------------------hhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccC
Q 007838 311 GNYGG----------------------ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (588)
Q Consensus 311 ~~~~~----------------------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (588)
.+... ......++..+..+++|++|++++|.+++.++..+. ..+++|++|+++
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~----~~~~~L~~L~L~- 326 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI----QKCPNLEVLETR- 326 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH----TTCTTCCEEEEE-
T ss_pred ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH----HhCcCCCEEecc-
Confidence 42111 011123344566788999999999999887765443 577899999999
Q ss_pred CCCChhhHHHHHHHHhcCCCCcEEEcc-----------CCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHH
Q 007838 369 NSISAKGAFHVAEYIKNCKSLLWINLY-----------MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (588)
Q Consensus 369 n~l~~~~~~~l~~~l~~~~~L~~L~L~-----------~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 437 (588)
+.+++.++. .....+++|++|+++ .+.+++.++..+. ..+++|++|+++.+.+++.+...+..
T Consensus 327 ~~~~~~~l~---~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 327 NVIGDRGLE---VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp GGGHHHHHH---HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CccCHHHHH---HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHh
Confidence 556665543 445778999999999 4688888766554 45799999999999999987666654
Q ss_pred HHhcCCCcCEEECc----CCCCChHHH-HHHHHHHhhCCCccEEEcccCC--CChhHHHHHHHHHhcCCcccEEEeecCC
Q 007838 438 VLKDNSVITSLDLA----YNPIGADGA-KALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLRANG 510 (588)
Q Consensus 438 ~l~~~~~L~~L~Ls----~n~i~~~~~-~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 510 (588)
.+++|+.|+++ .|.+++... ..+...+..+++|++|++++|. +++.+...+.. .+++|++|+|++|+
T Consensus 401 ---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 401 ---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---YSPNVRWMLLGYVG 474 (592)
T ss_dssp ---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH---SCTTCCEEEECSCC
T ss_pred ---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH---hCccceEeeccCCC
Confidence 36899999996 567775311 1133345668999999998654 88887776654 35999999999999
Q ss_pred CCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCcccccc
Q 007838 511 LRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFP 581 (588)
Q Consensus 511 l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~ 581 (588)
+++. .++..+.++++|++|+|++|.+++.. +......+ ++|++|+|++|+|++.|...++
T Consensus 475 l~~~---------~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~l-~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 475 ESDE---------GLMEFSRGCPNLQKLEMRGCCFSERA-IAAAVTKL-PSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp SSHH---------HHHHHHTCCTTCCEEEEESCCCBHHH-HHHHHHHC-SSCCEEEEESCBCCTTCTTGGG
T ss_pred CCHH---------HHHHHHhcCcccCeeeccCCCCcHHH-HHHHHHhc-CccCeeECcCCcCCHHHHHHHH
Confidence 9875 35677789999999999999986532 33334444 8999999999999999987775
No 5
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=3.6e-31 Score=272.98 Aligned_cols=296 Identities=21% Similarity=0.257 Sum_probs=202.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCC------hHHHHHHHHHHhhC
Q 007838 172 RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG------DEGVKCLCDILVDN 245 (588)
Q Consensus 172 ~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~------~~~~~~l~~~l~~~ 245 (588)
+.+++.++..++..+..+++|++|+|++|.+++.+...+...+..+++|++|+|++|.++ ..++..+...+..+
T Consensus 14 ~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 14 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp SSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 345556666666666666666666666666666666666666666666666666665433 23445555555666
Q ss_pred CCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhC---------CCcceeecCCCCCCh
Q 007838 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN---------STIRSLHLNGNYGGA 316 (588)
Q Consensus 246 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---------~~L~~L~L~~~~~~~ 316 (588)
++|++|+|++|.++..+...++..+..+++|++|+|++|.+++.+...++..+..+ ++|++|++++|.+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 66666666666666666666666666666666666666666655555666555555 677777777777776
Q ss_pred hHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHH-HHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcc
Q 007838 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (588)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 395 (588)
.+...+...+..+++|++|++++|.+++.++..+.. .+ ..+++|+.|++++|.+++.|...++..+..+++|++|+|+
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 666666666777777777777777777777666665 33 3556777888877777777777777777777888888888
Q ss_pred CCCCChHHHHHHHHHHhh--CCCccEEEeeCCcCCHHHHHHHHHHH-hcCCCcCEEECcCCCCChHH--HHHHHHHHh
Q 007838 396 MNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIHSKGASAIARVL-KDNSVITSLDLAYNPIGADG--AKALSEVLK 468 (588)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~ 468 (588)
+|.+++.+...++..+.. +++|++|+|++|.+++.++..++..+ ..+++|+.|++++|.+++.+ +..+...+.
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence 888887777777777754 77788888888888877777777776 44688888888888777666 355655554
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=1.6e-30 Score=283.89 Aligned_cols=385 Identities=15% Similarity=0.164 Sum_probs=273.2
Q ss_pred HHHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEccCCCCC
Q 007838 153 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (588)
Q Consensus 153 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 231 (588)
.+..+...+++|++|+|++|.+++..+..+... +++|++|+|++| .+++.++.. ....+++|++|++++|.++
T Consensus 96 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAA---IAATCRNLKELDLRESDVD 169 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHH---HHHHCTTCCEEECTTCEEE
T ss_pred HHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHH---HHHhCCCCCEEeCcCCccC
Confidence 455666788999999999999988876666533 689999999998 677655444 4456788999999998876
Q ss_pred hHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCC
Q 007838 232 DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311 (588)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 311 (588)
+.+...+......+++|++|++++|. .......+......+++|++|++++|.. . ..++..+..+++|++|++..
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~---~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVP-L---EKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSC-H---HHHHHHHHHCTTCSEEECSB
T ss_pred CcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCc-H---HHHHHHHhcCCcceEccccc
Confidence 65544455554567789999998886 2222234445555678888888888731 1 33566666677777777655
Q ss_pred CC--CChhHHHH------------------------HHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEE
Q 007838 312 NY--GGALGANA------------------------LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365 (588)
Q Consensus 312 ~~--~~~~~~~~------------------------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 365 (588)
+. +....... ++..+..+++|++|++++|.+++.++..+. ..+++|++|+
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~----~~~~~L~~L~ 320 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL----CQCPKLQRLW 320 (594)
T ss_dssp CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH----TTCTTCCEEE
T ss_pred ccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH----hcCCCcCEEe
Confidence 42 11111111 222223567889999999998877655543 4678899999
Q ss_pred ccCCCCChhhHHHHHHHHhcCCCCcEEEc---------cCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHH
Q 007838 366 IGNNSISAKGAFHVAEYIKNCKSLLWINL---------YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 436 (588)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L---------~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 436 (588)
+++| +++.++..+ ...+++|++|++ ..+.+++.++..+.. .+++|++|++..+.+++.+...+.
T Consensus 321 l~~~-~~~~~l~~l---~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 321 VLDY-IEDAGLEVL---ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp EEGG-GHHHHHHHH---HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHHHH
T ss_pred CcCc-cCHHHHHHH---HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHHHH
Confidence 9988 665544333 456889999988 345788887666543 368899998888999988766554
Q ss_pred HHHhcCCCcCEEECc--C----CCCC----hHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEe
Q 007838 437 RVLKDNSVITSLDLA--Y----NPIG----ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506 (588)
Q Consensus 437 ~~l~~~~~L~~L~Ls--~----n~i~----~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 506 (588)
. .+++|+.|+++ + +.++ +.++.. .+..+++|++|++++ .+++.++..++.. +++|++|+|
T Consensus 394 ~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~---l~~~~~~L~~L~L~~-~l~~~~~~~l~~~---~~~L~~L~L 463 (594)
T 2p1m_B 394 R---NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA---IVEHCKDLRRLSLSG-LLTDKVFEYIGTY---AKKMEMLSV 463 (594)
T ss_dssp H---HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH---HHHHCTTCCEEECCS-SCCHHHHHHHHHH---CTTCCEEEE
T ss_pred h---hCCCcceeEeecccCCCcccccCCchhhHHHH---HHhhCCCccEEeecC-cccHHHHHHHHHh---chhccEeec
Confidence 3 35899999998 4 5677 444443 356678999999977 8888888777663 489999999
Q ss_pred ecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCccccc
Q 007838 507 RANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFF 580 (588)
Q Consensus 507 ~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l 580 (588)
++|.+++. .+.....++++|++|+|++|.+++. .+......+ ++|+.|+|++|+++++|+..+
T Consensus 464 ~~~~i~~~---------~~~~l~~~~~~L~~L~L~~n~~~~~-~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 464 AFAGDSDL---------GMHHVLSGCDSLRKLEIRDCPFGDK-ALLANASKL-ETMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp ESCCSSHH---------HHHHHHHHCTTCCEEEEESCSCCHH-HHHHTGGGG-GGSSEEEEESSCCBHHHHHHH
T ss_pred cCCCCcHH---------HHHHHHhcCCCcCEEECcCCCCcHH-HHHHHHHhC-CCCCEEeeeCCCCCHHHHHHH
Confidence 99999876 2233347799999999999999543 333334434 789999999999998888665
No 7
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=3.6e-30 Score=262.94 Aligned_cols=297 Identities=19% Similarity=0.221 Sum_probs=212.7
Q ss_pred EEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCC-CccEEEccCCCCChHHHHHHHHHHhhC
Q 007838 167 VDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIGDEGVKCLCDILVDN 245 (588)
Q Consensus 167 L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 245 (588)
++++.+.+... ++..+...++|++|+|++|.+++.+...+...+..++ +|++|++++|.+++.+...+...+...
T Consensus 3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 56677777654 4444555566888888888887777777777777777 788888888887777667777776665
Q ss_pred -CCCCEEEecCCCCChhHHHHHHHHHhhC-CCccEEEeeccCCChhhHHHHHHHHhh-CCCcceeecCCCCCChhHHHHH
Q 007838 246 -AGVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANAL 322 (588)
Q Consensus 246 -~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~~~~~~~~~~~l 322 (588)
++|++|+|++|.+++.+...++..+..+ ++|++|++++|.+++.+...+...+.. +++|++|++++|.+++.+...+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 7788888888887777777777777766 678888888887777777777766666 3577777777777777777777
Q ss_pred HHHhhcCC-CCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhc-CCCCcEEEccCCCCC
Q 007838 323 AKGLEGNK-SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN-CKSLLWINLYMNDIG 400 (588)
Q Consensus 323 ~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~ 400 (588)
+..+..++ +|++|++++|.+++.+...++..+....++|++|++++|.+++.+...++..+.. .++|++|+|++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 77776665 7777777777777776666666665433477777777777777777777777766 347777777777777
Q ss_pred hHHHHHHHHHHhhCCCccEEEeeCCc---CCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHH
Q 007838 401 DEGAEKIADALKQNRTITTIDLGGNN---IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (588)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (588)
+.+...+...+..+++|++|+|++|. ++..+...+...+..+++|+.||+++|++.+.....+.+.+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l 308 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHH
Confidence 77766666666667777777777776 66666666666666677777777777777766555555444
No 8
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=4.2e-30 Score=262.39 Aligned_cols=270 Identities=17% Similarity=0.222 Sum_probs=126.8
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhhCC-CCCEEEecCCCCChhHHHHHHHHHhhC-CCccEEEeeccCCChhhHHHH
Q 007838 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNA-GVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSL 294 (588)
Q Consensus 217 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l 294 (588)
.++|++|++++|.+++.+...+...+..++ +|++|+|++|.+++.++..+...+... ++|++|+|++|.+++.+...+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 334555555555555544444444444444 455555555555554444454444443 445555555555544444444
Q ss_pred HHHHhhC-CCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCCh
Q 007838 295 AEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (588)
Q Consensus 295 ~~~l~~~-~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (588)
...+..+ ++|++|++++|.++..+...+...+..+ .++|++|++++|.+++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~----------------------------~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL----------------------------PASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS----------------------------CTTCCEEECTTSCGGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC----------------------------CCceeEEEccCCcCCH
Confidence 4444443 4444444444444444444444444432 2344444444444444
Q ss_pred hhHHHHHHHHhcCC-CCcEEEccCCCCChHHHHHHHHHHhhCC-CccEEEeeCCcCCHHHHHHHHHHHhc-CCCcCEEEC
Q 007838 374 KGAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIADALKQNR-TITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDL 450 (588)
Q Consensus 374 ~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L 450 (588)
.+...++..+...+ +|++|+|++|.+++.+...+...+..++ +|++|+|++|.+++.++..++..+.. +++|++|+|
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 44444444444443 4444444444444444444444444442 44444444444444444444444444 234555555
Q ss_pred cCCCCChHHHHHHHHHHhhCCCccEEEcccCC---CChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 451 AYNPIGADGAKALSEVLKFHGNINTLKLGWCQ---IGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 451 s~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
++|.+++.++..+...+..+++|++|++++|. ++..+...+...+..+++|++||+++|.+.+.
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 55555444444444444444445555555544 33333344444444444555555555555443
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.7e-34 Score=322.06 Aligned_cols=361 Identities=24% Similarity=0.318 Sum_probs=227.9
Q ss_pred cCCccEEEccCCCCCHHHHHHHHHHhhc-CCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 161 LRAFSSVDMSGRNFGDEGLFFLAESLGY-NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
+++|++|++++|.++.. ++..+.. +++|++|++++|.++.. +...+..+++|++|++++|.+.+. ++
T Consensus 268 l~~L~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----ip 335 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYGA----VPPFFGSCSLLESLALSSNNFSGE----LP 335 (768)
T ss_dssp CTTCCEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEEC----CCGGGGGCTTCCEEECCSSEEEEE----CC
T ss_pred cCCCCEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCCc----cchHHhcCCCccEEECCCCcccCc----CC
Confidence 45666666666655422 2222222 35566666666654321 122234455566666665554321 11
Q ss_pred -HHHhhCCCCCEEEecCCCCChhHHHHHHHH---------------------Hhh--CCCccEEEeeccCCChhhHHHHH
Q 007838 240 -DILVDNAGVERLQLSSVDLRDEGAKAIAEL---------------------LKN--NSILRVLELNNNMIDYSGFTSLA 295 (588)
Q Consensus 240 -~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~---------------------l~~--~~~L~~L~Ls~n~l~~~~~~~l~ 295 (588)
..+..+++|++|++++|.++......+... +.. .++|++|++++|.+++ .++
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~p 411 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG----KIP 411 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE----ECC
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc----ccC
Confidence 123444555555555555442222222221 111 3456666666665542 234
Q ss_pred HHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhh
Q 007838 296 EALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (588)
Q Consensus 296 ~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 375 (588)
..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+.....+ ..+++|++|++++|.++..
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~- 481 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLEGEIPQEL-----MYVKTLETLILDFNDLTGE- 481 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCCSC-
T ss_pred HHHhcCCCCCEEECcCCcccCc----ccHHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCceEEEecCCcccCc-
Confidence 5566777888888888766432 12346677788888888887765422222 3556788888888887764
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCC
Q 007838 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (588)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (588)
++..+..+++|++|++++|.+++. ++..+..+++|++|+|++|++++. ++..+..+++|+.|++++|.+
T Consensus 482 ---~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 482 ---IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN----IPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ---CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGGCTTCCEEECCSSEE
T ss_pred ---CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCCCEEECCCCcc
Confidence 555667788888888888888765 555667778888888888887644 445566778888888888865
Q ss_pred ChHHHHHHHH------------------------------------------------------------------HHhh
Q 007838 456 GADGAKALSE------------------------------------------------------------------VLKF 469 (588)
Q Consensus 456 ~~~~~~~l~~------------------------------------------------------------------~l~~ 469 (588)
....+..+.. .+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 4221111110 1122
Q ss_pred CCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHH
Q 007838 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAK 549 (588)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 549 (588)
+++|+.|+|++|++++..+..+..+ ++|+.|+|++|++++. +|..++++++|++|+|++|+++|.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l----~~L~~L~Ls~N~l~g~----------ip~~l~~L~~L~~LdLs~N~l~g~- 695 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSM----PYLFILNLGHNDISGS----------IPDEVGDLRGLNILDLSSNKLDGR- 695 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGC----TTCCEEECCSSCCCSC----------CCGGGGGCTTCCEEECCSSCCEEC-
T ss_pred cccccEEECcCCcccccCCHHHhcc----ccCCEEeCcCCccCCC----------CChHHhCCCCCCEEECCCCcccCc-
Confidence 3567888888888887666555544 8888888888888877 789999999999999999999987
Q ss_pred HHHHHHHhhhhccceeeccCCccccC
Q 007838 550 CLAQSFKVVNEALTSIDLAFNEIRVS 575 (588)
Q Consensus 550 ~l~~~~~~~~~~L~~L~ls~N~i~~~ 575 (588)
++..+..+ ++|++|||++|+++..
T Consensus 696 -ip~~l~~l-~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 696 -IPQAMSAL-TMLTEIDLSNNNLSGP 719 (768)
T ss_dssp -CCGGGGGC-CCCSEEECCSSEEEEE
T ss_pred -CChHHhCC-CCCCEEECcCCccccc
Confidence 55667666 8899999999998753
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.1e-34 Score=318.20 Aligned_cols=380 Identities=21% Similarity=0.222 Sum_probs=218.0
Q ss_pred HHHHHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhc-CCCccEEEccCCCCCh
Q 007838 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGNPIGD 232 (588)
Q Consensus 154 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~ 232 (588)
+...+..+++|++|++++|.+... ++. ..+++|++|++++|.++.. +...+.. +++|++|++++|.+..
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~----~~~--~~l~~L~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGP----IPP--LPLKSLQYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEES----CCC--CCCTTCCEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEE
T ss_pred ccHHHhcCCCCCEEECCCCcccCc----cCc--cccCCCCEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCC
Confidence 345567889999999999988642 111 1578999999999987532 1122223 4889999999998865
Q ss_pred HHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCC-CcceeecCC
Q 007838 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNG 311 (588)
Q Consensus 233 ~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~ 311 (588)
. ++..+..+++|++|++++|.++..... ..+..+++|++|++++|.+.. .++..+..++ +|++|++++
T Consensus 309 ~----~p~~~~~l~~L~~L~L~~n~l~~~ip~---~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 309 A----VPPFFGSCSLLESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSG----ELPESLTNLSASLLTLDLSS 377 (768)
T ss_dssp C----CCGGGGGCTTCCEEECCSSEEEEECCH---HHHTTCTTCCEEECCSSEEEE----CCCTTHHHHTTTCSEEECCS
T ss_pred c----cchHHhcCCCccEEECCCCcccCcCCH---HHHhcCCCCCEEeCcCCccCc----cccHHHHhhhcCCcEEEccC
Confidence 4 355677889999999999988732111 225567899999999998752 2233334444 677777777
Q ss_pred CCCChhHHHHHHHHhhc--CCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCC
Q 007838 312 NYGGALGANALAKGLEG--NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389 (588)
Q Consensus 312 ~~~~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L 389 (588)
|.++.... ..+.. +++|++|++++|.+.+.....+ ..+++|++|++++|.+++. ++..+..+++|
T Consensus 378 N~l~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L 444 (768)
T 3rgz_A 378 NNFSGPIL----PNLCQNPKNTLQELYLQNNGFTGKIPPTL-----SNCSELVSLHLSFNYLSGT----IPSSLGSLSKL 444 (768)
T ss_dssp SEEEEECC----TTTTCSTTCCCCEEECCSSEEEEECCGGG-----GGCTTCCEEECCSSEEESC----CCGGGGGCTTC
T ss_pred CCcCCCcC----hhhhhcccCCccEEECCCCccccccCHHH-----hcCCCCCEEECcCCcccCc----ccHHHhcCCCC
Confidence 65432111 11111 3455555555554443211111 2334455555555544432 23334445555
Q ss_pred cEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhh
Q 007838 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469 (588)
Q Consensus 390 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 469 (588)
++|++++|.++.. ++..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++.. ...+..
T Consensus 445 ~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~ 512 (768)
T 3rgz_A 445 RDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGEI----PKWIGR 512 (768)
T ss_dssp CEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSCC----CGGGGG
T ss_pred CEEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCcC----ChHHhc
Confidence 5555555544432 333344445555555555544432 2223344455555555555444321 122233
Q ss_pred CCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCC------------------------------
Q 007838 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC------------------------------ 519 (588)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~------------------------------ 519 (588)
+++|++|+|++|++++..+..+.. +++|++|++++|++.+.+|...
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~----l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGD----CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGG----CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred CCCCCEEECCCCcccCcCCHHHcC----CCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 344555555555444333222222 2444444444444443332110
Q ss_pred -----------------------------------------------------CCch-hhhhhHhhhhcccchhhhhccc
Q 007838 520 -----------------------------------------------------NGLS-FFHSAIYSLKHMLFYSLCINYL 545 (588)
Q Consensus 520 -----------------------------------------------------~~l~-~~~~~~~~l~~L~~L~Ls~n~l 545 (588)
+.+. .+|..+++++.|+.|+|++|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 0111 2678899999999999999999
Q ss_pred hhHHHHHHHHHhhhhccceeeccCCccccCccccccccccc
Q 007838 546 QGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFPFFSFF 586 (588)
Q Consensus 546 ~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~~~~~~ 586 (588)
+|. ++..+..+ ++|+.|||++|+++..-...+..+++.
T Consensus 669 ~g~--ip~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 669 SGS--IPDEVGDL-RGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp CSC--CCGGGGGC-TTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred CCC--CChHHhCC-CCCCEEECCCCcccCcCChHHhCCCCC
Confidence 987 55667666 889999999999987766666555443
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.1e-28 Score=269.08 Aligned_cols=387 Identities=14% Similarity=0.139 Sum_probs=279.1
Q ss_pred HHHHHHcCCccEEEccCCCC-----------CHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEE
Q 007838 155 NEFAKELRAFSSVDMSGRNF-----------GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223 (588)
Q Consensus 155 ~~~l~~~~~L~~L~Ls~~~l-----------~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L 223 (588)
..++..+++|++|+|++|.. .......+......+++|++|+|++|.+++..+..+...+. .+|++|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L 143 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETL 143 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEE
Confidence 35677899999999987532 11111224444456899999999999999988877766533 249999
Q ss_pred EccCCC-CChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCC
Q 007838 224 NLSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302 (588)
Q Consensus 224 ~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 302 (588)
++++|. +++.+ +......+++|++|+|++|.+++.+...+......+++|++|++++|.++......+...+..++
T Consensus 144 ~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 999986 44444 44555678999999999999887776667777788999999999999987545566677777899
Q ss_pred CcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCC-------------------------hhHHHHHHHHHhcC
Q 007838 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG-------------------------DEGIRALMSGLSSR 357 (588)
Q Consensus 303 ~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-------------------------~~~~~~l~~~l~~~ 357 (588)
+|++|++++|.+.. ++..+..+++|++|++++.... ...+.. +...
T Consensus 221 ~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~----~~~~ 291 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI----LFPF 291 (592)
T ss_dssp TCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG----GGGG
T ss_pred CCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH----HHhh
Confidence 99999999997754 3345667888888888642111 111111 1234
Q ss_pred CCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEee-----------CCc
Q 007838 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG-----------GNN 426 (588)
Q Consensus 358 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls-----------~n~ 426 (588)
+++|++|++++|.+++.+. ...+..+++|++|+++ +.+++.++..+. ..+++|++|+|+ .+.
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGCCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred cCCCcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEeecCccccccccccCc
Confidence 5689999999998877653 3446888999999998 556666554443 456889999999 357
Q ss_pred CCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcc----cCCCChhHHH-HHHHHHhcCCcc
Q 007838 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG----WCQIGASGAE-FVADMLRYNNTI 501 (588)
Q Consensus 427 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~----~n~i~~~~~~-~l~~~l~~~~~L 501 (588)
+++.+...+. ..+++|++|+++.|.+++.++..+.. .+++|++|+++ .+.+++.... .+...+..+++|
T Consensus 365 ~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 365 VSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp CCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred cCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 8877655543 44689999999888998887766653 35789999996 5567763111 233334557999
Q ss_pred cEEEeecCC--CCcccccCCCCchhhhhhH-hhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCccc
Q 007838 502 SILDLRANG--LRDEVCSGCNGLSFFHSAI-YSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNII 578 (588)
Q Consensus 502 ~~L~L~~n~--l~~~~~~~~~~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~ 578 (588)
++|++++|. +++. .+..+ ..+++|++|+|++|++++.. +...+..+ ++|++|+|++|.|++.++.
T Consensus 439 ~~L~L~~~~~~l~~~----------~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~-~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDL----------GLSYIGQYSPNVRWMLLGYVGESDEG-LMEFSRGC-PNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp CEEEEECCGGGCCHH----------HHHHHHHSCTTCCEEEECSCCSSHHH-HHHHHTCC-TTCCEEEEESCCCBHHHHH
T ss_pred CEEEEecCCCCccHH----------HHHHHHHhCccceEeeccCCCCCHHH-HHHHHhcC-cccCeeeccCCCCcHHHHH
Confidence 999998543 6665 33344 45899999999999998632 34444445 8899999999999888775
Q ss_pred cc
Q 007838 579 FF 580 (588)
Q Consensus 579 ~l 580 (588)
.+
T Consensus 507 ~~ 508 (592)
T 3ogk_B 507 AA 508 (592)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=8.1e-28 Score=262.44 Aligned_cols=375 Identities=16% Similarity=0.176 Sum_probs=265.2
Q ss_pred HHHHHHHHcCCccEEEccCC-CCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCC--
Q 007838 153 TLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-- 229 (588)
Q Consensus 153 ~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-- 229 (588)
.+..+.+.+++|++|+|++| .+++.++..+ +..+++|++|+|++|.+++.+...+......+++|++|++++|.
T Consensus 121 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 197 (594)
T 2p1m_B 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSC
T ss_pred HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCc
Confidence 34445556788888888888 6666554443 34578888888888877665555555555567788888888875
Q ss_pred CChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccC--CChhhHHHHHHH----------
Q 007838 230 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTSLAEA---------- 297 (588)
Q Consensus 230 i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~---------- 297 (588)
+++.. +......+++|++|++++|... ..+...+..+++|++|+++.+. +....+..+...
T Consensus 198 ~~~~~---l~~l~~~~~~L~~L~L~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 198 VSFSA---LERLVTRCPNLKSLKLNRAVPL----EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp CCHHH---HHHHHHHCTTCCEEECCTTSCH----HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred CCHHH---HHHHHHhCCCCcEEecCCCCcH----HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 55443 3444455788888888877211 1255566667777777765542 222222332222
Q ss_pred --------------HhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceE
Q 007838 298 --------------LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (588)
Q Consensus 298 --------------l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 363 (588)
+..+++|++|++++|.+++.. +...+..+++|++|++++| +++.++..+. ..+++|++
T Consensus 271 s~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~----~~~~~L~~ 342 (594)
T 2p1m_B 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLA----STCKDLRE 342 (594)
T ss_dssp ECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHH----HHCTTCCE
T ss_pred cCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHH----HhCCCCCE
Confidence 234678999999999977544 3445678999999999998 7777766665 34678999
Q ss_pred EEc---------cCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEee--C----CcCC
Q 007838 364 LDI---------GNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG--G----NNIH 428 (588)
Q Consensus 364 L~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls--~----n~i~ 428 (588)
|++ ..+.+++.+...+. ..+++|++|.+..+.+++.++..+.. .+++|++|+++ + +.++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVS---MGCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHH---HHCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESSTTCCCTTT
T ss_pred EEEecCcccccccCCCCCHHHHHHHH---HhchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeecccCCCccccc
Confidence 999 34578887665543 56899999999999999987665543 46899999999 4 5777
Q ss_pred ----HHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEE
Q 007838 429 ----SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504 (588)
Q Consensus 429 ----~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 504 (588)
+.++. ..+..+++|+.|++++ .+++.++..+.. .+++|++|+|++|.+++.++..+... +++|++|
T Consensus 417 ~~~~~~~~~---~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~~---~~~L~~L 486 (594)
T 2p1m_B 417 LEPLDIGFG---AIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLSG---CDSLRKL 486 (594)
T ss_dssp CCCTHHHHH---HHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHHH---CTTCCEE
T ss_pred CCchhhHHH---HHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHhc---CCCcCEE
Confidence 55544 4456679999999988 799988777765 45899999999999999888776443 6999999
Q ss_pred EeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcc
Q 007838 505 DLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEI 572 (588)
Q Consensus 505 ~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i 572 (588)
+|++|.+++. .+...+..+++|++|++++|.++.. .+......+ +.|+...+..+.-
T Consensus 487 ~L~~n~~~~~---------~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~l-p~l~i~~~~~~~~ 543 (594)
T 2p1m_B 487 EIRDCPFGDK---------ALLANASKLETMRSLWMSSCSVSFG-ACKLLGQKM-PKLNVEVIDERGA 543 (594)
T ss_dssp EEESCSCCHH---------HHHHTGGGGGGSSEEEEESSCCBHH-HHHHHHHHC-TTEEEEEECSSSC
T ss_pred ECcCCCCcHH---------HHHHHHHhCCCCCEEeeeCCCCCHH-HHHHHHHhC-CCCEEEEecCCCc
Confidence 9999999765 2344566799999999999998543 222222333 6676666666543
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.8e-29 Score=265.37 Aligned_cols=330 Identities=20% Similarity=0.214 Sum_probs=259.2
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|++|++++|.+++. .. +..+++|++|++++|.++.... +..+++|++|++++|.+.+..
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~--- 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDI-----TP-LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDID--- 128 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCG---
T ss_pred hhhhcCCCEEECCCCccCCc-----hh-hhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCCCh---
Confidence 34678999999999988764 22 6778899999999998875431 677889999999999887653
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChh
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 317 (588)
.+..+++|++|++++|.+++.. .+..+++|++|+++++ +... ..+..+++|++|++++|.++..
T Consensus 129 ---~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~-~~~~------~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 129 ---PLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQ-VTDL------KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ---GGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEES-CCCC------GGGTTCTTCCEEECCSSCCCCC
T ss_pred ---HHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCCc-ccCc------hhhccCCCCCEEECcCCcCCCC
Confidence 1677899999999999887642 2556788999999754 3321 1266789999999999988764
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC
Q 007838 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (588)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 397 (588)
. .+..+++|++|++++|.+.+... + ..+++|+.|++++|.+++. ..+..+++|++|++++|
T Consensus 193 ~------~l~~l~~L~~L~l~~n~l~~~~~--~-----~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 193 S------VLAKLTNLESLIATNNQISDITP--L-----GILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp G------GGGGCTTCSEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred h------hhccCCCCCEEEecCCccccccc--c-----cccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCC
Confidence 3 36788999999999998876432 2 3567899999999998874 24678899999999999
Q ss_pred CCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEE
Q 007838 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477 (588)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 477 (588)
.+++.. . +..+++|++|++++|.++.... +..+++|+.|++++|.+++... +..+++|++|+
T Consensus 254 ~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~ 315 (466)
T 1o6v_A 254 QISNLA-----P-LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------ISNLKNLTYLT 315 (466)
T ss_dssp CCCCCG-----G-GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEE
T ss_pred ccccch-----h-hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEE
Confidence 988742 1 6778999999999999886421 5677999999999998876432 56778999999
Q ss_pred cccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHh
Q 007838 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKV 557 (588)
Q Consensus 478 L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~ 557 (588)
+++|++++..+ +..+++|++|++++|++.+. ..+..+++|+.|++++|.+++..+ +..
T Consensus 316 L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------------~~l~~l~~L~~L~l~~n~l~~~~~----~~~ 373 (466)
T 1o6v_A 316 LYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------------SSLANLTNINWLSAGHNQISDLTP----LAN 373 (466)
T ss_dssp CCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------------GGGTTCTTCCEEECCSSCCCBCGG----GTT
T ss_pred CcCCcCCCchh------hccCccCCEeECCCCccCCc------------hhhccCCCCCEEeCCCCccCccch----hhc
Confidence 99999988654 34569999999999999866 468899999999999999998754 343
Q ss_pred hhhccceeeccCCccccCccc
Q 007838 558 VNEALTSIDLAFNEIRVSNII 578 (588)
Q Consensus 558 ~~~~L~~L~ls~N~i~~~~~~ 578 (588)
+ ++|+.|++++|+++...+.
T Consensus 374 l-~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 374 L-TRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp C-TTCCEEECCCEEEECCCBC
T ss_pred C-CCCCEEeccCCcccCCchh
Confidence 4 7899999999998875543
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=6.3e-29 Score=252.42 Aligned_cols=285 Identities=22% Similarity=0.249 Sum_probs=168.7
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
.+++|++|+++++.+.+. ..+..+++|++|++++|.+++... +..+++|++|++++|.+.+.
T Consensus 42 ~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------
T ss_pred hcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------
Confidence 568888999988887652 235667888888888888775422 56677888888888877653
Q ss_pred HHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHH
Q 007838 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (588)
Q Consensus 240 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~ 319 (588)
..+..+++|++|++++|.++.... +..+++|++|++++|..... ...+..+++|++|++++|.+.....
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred hHHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh
Confidence 235667778888888877765422 44567777777777732211 1124556667777776666554332
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCC
Q 007838 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (588)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 399 (588)
+..+++|++|++++|.+.+... + ..+++|+.|++++|.+++... +..+++|++|++++|.+
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~~~--~-----~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDISP--L-----ASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCCGG--G-----GGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCC
T ss_pred ------hccCCCCCEEEccCCccccccc--c-----cCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCcc
Confidence 4456666666666666554321 1 244566666666666655311 45566666666666666
Q ss_pred ChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcc
Q 007838 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (588)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (588)
++.. . +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|+++
T Consensus 234 ~~~~-----~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 234 TDLS-----P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLN 295 (347)
T ss_dssp CCCG-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred CCCc-----c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECc
Confidence 5531 1 44556666666666655542 2244455666666666655542 123444555555555
Q ss_pred cCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
+|.++...+..+..+ ++|++|++++|++.+.
T Consensus 296 ~n~l~~~~~~~l~~l----~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGL----TNLTTLFLSQNHITDI 326 (347)
T ss_dssp SSCCCGGGHHHHHTC----TTCSEEECCSSSCCCC
T ss_pred CCcCCCcChhHhhcc----ccCCEEEccCCccccc
Confidence 555555544444333 5555555555555544
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.1e-31 Score=293.91 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=27.7
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD 232 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 232 (588)
.+++|++|++++|.++... ...+..+++|++|++++|.++......+ ..+++|++|++++|.+..
T Consensus 103 ~l~~L~~L~L~~n~i~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSID----FIPLHNQKTLESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp SCTTCCEEECTTSCCSCGG----GSCCTTCTTCCEEECCSSCCCCCCCCTT----CCCTTCCEEECCSSCCCE
T ss_pred ccccccEeeccccCcccCC----cchhccCCcccEEECCCCcccccCcccc----cCCcccCEEEcccCcccc
Confidence 3445555555555544311 1123344555555555554432211111 113445555555555543
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.5e-31 Score=292.71 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=74.5
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|++|+|++|.+... .+..+..+++|++|++++|.++..... .+..+++|++|++++|.+....
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~L~~n~l~~~~--- 145 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFM----AETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIK--- 145 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEE----CTTTTSSCTTCCEEECTTSCCSCGGGS----CCTTCTTCCEEECCSSCCCCCC---
T ss_pred ccCccccCeeeCCCCccccc----ChhhhcccccccEeeccccCcccCCcc----hhccCCcccEEECCCCcccccC---
Confidence 34677888888888877643 234566678888888888887753222 2456778888888888776532
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCcc--EEEeeccCCC
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILR--VLELNNNMID 287 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~--~L~Ls~n~l~ 287 (588)
++.. ..+++|++|++++|.++......+ ..+++|+ .|++++|.+.
T Consensus 146 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 146 LPKG-FPTEKLKVLDFQNNAIHYLSKEDM----SSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CCTT-CCCTTCCEEECCSSCCCEECHHHH----HTTTTCCSEEEECTTCCCC
T ss_pred cccc-cCCcccCEEEcccCcccccChhhh----hhhcccceeEEecCCCccC
Confidence 1111 236788888888888876544333 3346666 6677766654
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.1e-28 Score=250.75 Aligned_cols=304 Identities=22% Similarity=0.246 Sum_probs=248.0
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHH
Q 007838 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (588)
Q Consensus 189 ~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~ 268 (588)
+++|++|++++|.+++.. .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++..
T Consensus 43 l~~L~~L~l~~~~i~~~~------~~~~~~~L~~L~l~~n~i~~~~-----~-~~~l~~L~~L~L~~n~i~~~~------ 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ------GIEYLTNLEYLNLNGNQITDIS-----P-LSNLVKLTNLYIGTNKITDIS------ 104 (347)
T ss_dssp HTTCSEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCG------
T ss_pred cccccEEEEeCCccccch------hhhhcCCccEEEccCCccccch-----h-hhcCCcCCEEEccCCcccCch------
Confidence 489999999999987532 2677899999999999998753 2 677899999999999998742
Q ss_pred HHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHH
Q 007838 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (588)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 348 (588)
.+..+++|++|++++|.+.+.. . +..+++|++|++++|...... ..+..+++|++|++++|.+.+...
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~-----~-~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~- 172 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDIS-----P-LANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTESKVKDVTP- 172 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCG-----G-GTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred HHcCCCcCCEEECcCCcccCch-----h-hccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEecCCCcCCchh-
Confidence 3567899999999999987532 1 668999999999999533221 226789999999999998876433
Q ss_pred HHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCC
Q 007838 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (588)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (588)
+ ..+++|++|++++|.+.+.. . +..+++|++|++++|.+++... +..+++|++|++++|.++
T Consensus 173 -~-----~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 173 -I-----ANLTDLYSLSLNYNQIEDIS-----P-LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp -G-----GGCTTCSEEECTTSCCCCCG-----G-GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCC
T ss_pred -h-----ccCCCCCEEEccCCcccccc-----c-ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccC
Confidence 2 46789999999999998742 2 6889999999999999987521 677899999999999998
Q ss_pred HHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeec
Q 007838 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (588)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 508 (588)
+... +..+++|++|++++|.+++. ..+..+++|++|++++|+++... .+..+++|++|++++
T Consensus 235 ~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 235 DLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCS
T ss_pred CCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECcC
Confidence 6532 66789999999999998874 23567799999999999998862 355669999999999
Q ss_pred CCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccc
Q 007838 509 NGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 509 n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~ 573 (588)
|.+.+. .+..+..+++|++|+|++|.+++..+ +..+ ++|++||+++|.|+
T Consensus 297 n~l~~~----------~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l-~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 297 NQLGNE----------DMEVIGGLTNLTTLFLSQNHITDIRP----LASL-SKMDSADFANQVIK 346 (347)
T ss_dssp SCCCGG----------GHHHHHTCTTCSEEECCSSSCCCCGG----GGGC-TTCSEESSSCC---
T ss_pred CcCCCc----------ChhHhhccccCCEEEccCCccccccC----hhhh-hccceeehhhhccc
Confidence 999977 67889999999999999999998644 3334 88999999999986
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.5e-32 Score=295.50 Aligned_cols=363 Identities=16% Similarity=0.177 Sum_probs=271.0
Q ss_pred HHHHcCCccEEEccCCCCCHH-------------HHHHHHHHhh--cCCCccEEEeecCCCCHHHHHHHHHHHhcCCCcc
Q 007838 157 FAKELRAFSSVDMSGRNFGDE-------------GLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221 (588)
Q Consensus 157 ~l~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~ 221 (588)
.+..+++|++|+|++|.++.. ....++..+. .+++|++|++++|.+... ++..+..+++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~ 276 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALPEMQ 276 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCSSCC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCCCCC
Confidence 356789999999999999872 1222666777 899999999999987642 345567889999
Q ss_pred EEEccCCC-CCh-HHHHHHHHHHhh------CCCCCEEEecCCCCChhHHHHHHH--HHhhCCCccEEEeeccCCChhhH
Q 007838 222 TLNLSGNP-IGD-EGVKCLCDILVD------NAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGF 291 (588)
Q Consensus 222 ~L~Ls~n~-i~~-~~~~~l~~~l~~------~~~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~ 291 (588)
+|++++|. ++. . ++..+.. +++|++|++++|.++. ++. .+..+++|++|++++|.+..
T Consensus 277 ~L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g--- 344 (636)
T 4eco_A 277 LINVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEG--- 344 (636)
T ss_dssp EEECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEE---
T ss_pred EEECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCcc---
Confidence 99999998 886 3 3444444 4899999999999984 333 56677999999999999862
Q ss_pred HHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCC-CCEEEccCCCCChhHHHHHHHHHhc-CCCCceEEEccCC
Q 007838 292 TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNN 369 (588)
Q Consensus 292 ~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n 369 (588)
.++ .+..+++|++|++++|.++. ++..+..+++ |++|++++|.+.. +...+.. .+++|+.|++++|
T Consensus 345 -~ip-~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 345 -KLP-AFGSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp -ECC-CCEEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred -chh-hhCCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCC
Confidence 334 56778999999999998762 3455778888 9999999999873 2211111 1347999999999
Q ss_pred CCChhhHHHHHHHHh-------cCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHH---H
Q 007838 370 SISAKGAFHVAEYIK-------NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV---L 439 (588)
Q Consensus 370 ~l~~~~~~~l~~~l~-------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l 439 (588)
.++.. ++..+. .+++|++|++++|.++.. -...+..+++|++|+|++|.++......+... +
T Consensus 413 ~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l----p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 413 EIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKF----PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp CTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSC----CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred cCCCc----chhhhcccccccccCCCCCEEECcCCccCcC----CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 99875 444445 677999999999999853 12234457999999999999883211111000 1
Q ss_pred hcCCCcCEEECcCCCCChHHHHHHHHHHh--hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeec------CCC
Q 007838 440 KDNSVITSLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA------NGL 511 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~------n~l 511 (588)
..+++|+.|+|++|.++. +...+. .+++|++|+|++|+++.. +.. +..+++|++|+|++ |++
T Consensus 485 ~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~----~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSKF-PTQ----PLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp TTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSSC-CCG----GGGCSSCCEEECCSCBCTTCCBC
T ss_pred cccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCCc-Chh----hhcCCCCCEEECCCCcccccCcc
Confidence 112389999999999984 333443 678999999999999873 333 34459999999954 556
Q ss_pred CcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCcccccc
Q 007838 512 RDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFP 581 (588)
Q Consensus 512 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~ 581 (588)
.+. +|..+..+++|++|+|++|++.. ++..+. ++|+.|||++|++...+...+.
T Consensus 555 ~~~----------~p~~l~~l~~L~~L~Ls~N~l~~---ip~~~~---~~L~~L~Ls~N~l~~~~~~~~~ 608 (636)
T 4eco_A 555 LRE----------WPEGITLCPSLTQLQIGSNDIRK---VNEKIT---PNISVLDIKDNPNISIDLSYVC 608 (636)
T ss_dssp CCC----------CCTTGGGCSSCCEEECCSSCCCB---CCSCCC---TTCCEEECCSCTTCEEECTTTH
T ss_pred ccc----------ChHHHhcCCCCCEEECCCCcCCc---cCHhHh---CcCCEEECcCCCCccccHHhcc
Confidence 655 78899999999999999999954 333333 7899999999999887765544
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.3e-28 Score=258.36 Aligned_cols=327 Identities=21% Similarity=0.233 Sum_probs=265.9
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
.+++++.|++.++.+.. +. .+..+++|++|++++|.+++.. . +..+++|++|++++|.+....
T Consensus 44 ~l~~l~~L~l~~~~i~~-----l~-~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~----- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-----ID-GVEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADIT----- 106 (466)
T ss_dssp HHHTCCEEECCSSCCCC-----CT-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCG-----
T ss_pred HhccccEEecCCCCCcc-----Cc-chhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccCh-----
Confidence 45789999999998875 22 3667899999999999987653 1 678899999999999998753
Q ss_pred HHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHH
Q 007838 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (588)
Q Consensus 240 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~ 319 (588)
. +..+++|++|++++|.+++... +..+++|++|++++|.+.+. ..+..+++|++|+++. .+....
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~-~~~~~~- 171 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDI------SALSGLTSLQQLSFGN-QVTDLK- 171 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCC------GGGTTCTTCSEEEEEE-SCCCCG-
T ss_pred h-hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCC------hhhccCCcccEeecCC-cccCch-
Confidence 2 6788999999999999987532 56789999999999988753 2367899999999974 333321
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCC
Q 007838 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (588)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 399 (588)
.+..+++|++|++++|.+.+.. .+ ..+++|++|++++|.+++.. + +..+++|++|++++|.+
T Consensus 172 -----~~~~l~~L~~L~l~~n~l~~~~--~l-----~~l~~L~~L~l~~n~l~~~~----~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 172 -----PLANLTTLERLDISSNKVSDIS--VL-----AKLTNLESLIATNNQISDIT----P--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp -----GGTTCTTCCEEECCSSCCCCCG--GG-----GGCTTCSEEECCSSCCCCCG----G--GGGCTTCCEEECCSSCC
T ss_pred -----hhccCCCCCEEECcCCcCCCCh--hh-----ccCCCCCEEEecCCcccccc----c--ccccCCCCEEECCCCCc
Confidence 2678999999999999987642 12 46789999999999998752 1 57899999999999999
Q ss_pred ChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcc
Q 007838 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (588)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (588)
++. ..+..+++|++|++++|.++.... +..+++|+.|++++|.+++... +..+++|++|+++
T Consensus 234 ~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 KDI------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP------LAGLTALTNLELN 295 (466)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECC
T ss_pred ccc------hhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcC
Confidence 874 246778999999999999986431 6678999999999999887532 5677999999999
Q ss_pred cCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhh
Q 007838 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVN 559 (588)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~ 559 (588)
+|+++...+ +..+++|++|++++|++.+. .+ +..+++|+.|++++|.+++.. .+..+
T Consensus 296 ~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~----------~~--~~~l~~L~~L~l~~n~l~~~~----~l~~l- 352 (466)
T 1o6v_A 296 ENQLEDISP------ISNLKNLTYLTLYFNNISDI----------SP--VSSLTKLQRLFFYNNKVSDVS----SLANL- 352 (466)
T ss_dssp SSCCSCCGG------GGGCTTCSEEECCSSCCSCC----------GG--GGGCTTCCEEECCSSCCCCCG----GGTTC-
T ss_pred CCcccCchh------hcCCCCCCEEECcCCcCCCc----------hh--hccCccCCEeECCCCccCCch----hhccC-
Confidence 999988644 45569999999999999987 22 789999999999999999852 34445
Q ss_pred hccceeeccCCccccCcc
Q 007838 560 EALTSIDLAFNEIRVSNI 577 (588)
Q Consensus 560 ~~L~~L~ls~N~i~~~~~ 577 (588)
++|+.|++++|++++...
T Consensus 353 ~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TTCCEEECCSSCCCBCGG
T ss_pred CCCCEEeCCCCccCccch
Confidence 889999999999987654
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=7.6e-31 Score=276.83 Aligned_cols=370 Identities=17% Similarity=0.118 Sum_probs=258.3
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
++|++|+|++|.+++. .+..+..+++|++|++++|.++..- -...+..+++|++|++++|.+... .+..
T Consensus 30 ~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQFLQL----ETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCTTCEE----CTTT
T ss_pred CccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCccCcc----Chhh
Confidence 6799999999998764 3455777899999999999874210 012356678899999999998765 2445
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHH-HhhCCCcceeecCCCCCChhHHH
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA-LLENSTIRSLHLNGNYGGALGAN 320 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~~~~~ 320 (588)
+..+++|++|++++|.+++..... ..+..+++|++|++++|.+.... +.. +..+++|++|++++|.++.....
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQ----PASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCC----CCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccC----cccccCCCCcccEEeCCCCcccccChh
Confidence 667899999999999988642211 12556789999999999886431 222 56789999999999987654332
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHH---hcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC
Q 007838 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL---SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (588)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 397 (588)
.+.. + ..++|+.|++++|.+.+.....+.... ...+++|++|++++|.++......+... ...++|+.|++++|
T Consensus 173 ~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 173 DLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLILSNS 249 (455)
T ss_dssp TSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-TTTCCEEEEECTTC
T ss_pred hhhc-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-ccccceeeEeeccc
Confidence 2211 0 226789999999887653221110000 0134689999999999988744444332 22478999999887
Q ss_pred CCChHHHHH------HHHHHh--hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhh
Q 007838 398 DIGDEGAEK------IADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469 (588)
Q Consensus 398 ~l~~~~~~~------l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 469 (588)
.+....... ....+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+++.... .+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~ 321 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDN----AFWG 321 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTT----TTTT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChh----HhcC
Confidence 543211000 000011 136899999999988864 344566779999999999988865332 3355
Q ss_pred CCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHH
Q 007838 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAK 549 (588)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 549 (588)
+++|++|++++|.++...+..+.. +++|++|+|++|++.+. .+..+..+++|++|+|++|++++.
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~- 386 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFEN----LDKLEVLDLSYNHIRAL----------GDQSFLGLPNLKELALDTNQLKSV- 386 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTT----CTTCCEEECCSSCCCEE----------CTTTTTTCTTCCEEECCSSCCSCC-
T ss_pred cccCCEEECCCCccCCcChhHhcC----cccCCEEECCCCccccc----------ChhhccccccccEEECCCCccccC-
Confidence 689999999999998776555444 48999999999999877 567888899999999999999874
Q ss_pred HHHHHHHhhhhccceeeccCCccccCc
Q 007838 550 CLAQSFKVVNEALTSIDLAFNEIRVSN 576 (588)
Q Consensus 550 ~l~~~~~~~~~~L~~L~ls~N~i~~~~ 576 (588)
....+..+ ++|+.|+|++|+++..-
T Consensus 387 -~~~~~~~l-~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 387 -PDGIFDRL-TSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp -CTTTTTTC-TTCCEEECCSSCBCCCT
T ss_pred -CHhHhccC-CcccEEEccCCCcccCC
Confidence 22334444 78999999999987653
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5e-30 Score=275.25 Aligned_cols=376 Identities=13% Similarity=0.098 Sum_probs=201.2
Q ss_pred HHHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007838 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (588)
Q Consensus 157 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (588)
.+..+++|++|+|++|.++.. .+..+..+++|++|++++|.++... .. .+++|++|++++|.+....
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~--~l~~L~~L~L~~N~l~~~~-- 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYL----DISVFKFNQELEYLDLSHNKLVKIS-----CH--PTVNLKHLDLSFNAFDALP-- 106 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEE----EGGGGTTCTTCCEEECCSSCCCEEE-----CC--CCCCCSEEECCSSCCSSCC--
T ss_pred hccccccccEEecCCCccCCc----ChHHhhcccCCCEEecCCCceeecC-----cc--ccCCccEEeccCCcccccc--
Confidence 445678888888888887653 2445666788888888888876422 11 5677888888888876421
Q ss_pred HHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCc--cEEEeeccCC--ChhhHHHHHH----------------
Q 007838 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSGFTSLAE---------------- 296 (588)
Q Consensus 237 ~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L--~~L~Ls~n~l--~~~~~~~l~~---------------- 296 (588)
++..+..+++|++|++++|.++... +..++.| ++|++++|.+ .......+..
T Consensus 107 -~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 107 -ICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp -CCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred -chhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 2345666788888888888887632 2333556 8888888776 2111111110
Q ss_pred ------HHhhCCCcceeecCCCC--CChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccC
Q 007838 297 ------ALLENSTIRSLHLNGNY--GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (588)
Q Consensus 297 ------~l~~~~~L~~L~L~~~~--~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (588)
.+..+++|+.|++++|. ............+..+++|++|++++|.+.+..+..+..... .++|++|++++
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~ 256 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEeec
Confidence 11124556666665553 000111112235666777777777777776665555544332 23566666655
Q ss_pred CCCChh----------------------------hHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEE
Q 007838 369 NSISAK----------------------------GAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420 (588)
Q Consensus 369 n~l~~~----------------------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 420 (588)
|.+++. ....+...+ ...+|+.|++++|.+.... ....+++|++|
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~-~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L 329 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTRMVHML------CPSKISPFLHL 329 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH-HTCCCSEEEEESSCCCCCC------CCSSCCCCCEE
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhccc-ccCceeEEEcCCCcccccc------chhhCCcccEE
Confidence 544321 001121111 1123333333333332210 00234555555
Q ss_pred EeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCCh-hHHHHHHHHHhcCC
Q 007838 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA-SGAEFVADMLRYNN 499 (588)
Q Consensus 421 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~ 499 (588)
++++|.+++. ++..+..+++|++|++++|.+++. ..+...+..+++|++|++++|.++. ..... +...+
T Consensus 330 ~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~----~~~l~ 399 (520)
T 2z7x_B 330 DFSNNLLTDT----VFENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGD----CSWTK 399 (520)
T ss_dssp ECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECCSSCCBCCGGGCS----CCCCT
T ss_pred EeECCccChh----hhhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECCCCcCCcccccch----hccCc
Confidence 5555555542 222334445555555555555531 1123334445555555555555554 22111 12225
Q ss_pred cccEEEeecCCCCcccccC-----------CCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeecc
Q 007838 500 TISILDLRANGLRDEVCSG-----------CNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLA 568 (588)
Q Consensus 500 ~L~~L~L~~n~l~~~~~~~-----------~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls 568 (588)
+|++|++++|++++.++.. .+++..+|..+..+++|++|+|++|++++... ..+..+ ++|++|+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l-~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD--GIFDRL-TSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCT--TTTTTC-TTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCH--HHhccC-CcccEEECc
Confidence 5555555555555443322 12333457777788888888888888875321 124434 678888888
Q ss_pred CCccccC
Q 007838 569 FNEIRVS 575 (588)
Q Consensus 569 ~N~i~~~ 575 (588)
+|+++..
T Consensus 477 ~N~~~c~ 483 (520)
T 2z7x_B 477 TNPWDCS 483 (520)
T ss_dssp SSCBCCC
T ss_pred CCCCccc
Confidence 8887653
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.3e-31 Score=290.41 Aligned_cols=346 Identities=13% Similarity=0.129 Sum_probs=245.7
Q ss_pred HHHHhhcCCCccEEEeecCCCCHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCC
Q 007838 182 LAESLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNA 246 (588)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~i~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 246 (588)
++..+..+++|++|+|++|.++.. ....++..+. .+++|++|++++|.+... ++..+.+++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCC
Confidence 344567788999999999998762 1112455556 788999999999987654 456677789
Q ss_pred CCCEEEecCCC-CCh-hHHHHHHHH--HhhCCCccEEEeeccCCChhhHHHHHH--HHhhCCCcceeecCCCCCC-hhHH
Q 007838 247 GVERLQLSSVD-LRD-EGAKAIAEL--LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGG-ALGA 319 (588)
Q Consensus 247 ~L~~L~L~~~~-l~~-~~~~~l~~~--l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~-~~~~ 319 (588)
+|++|++++|. ++. .....+..+ +..+++|++|++++|+++ .++. .+..+++|++|++++|.++ ...
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 99999999998 876 434444332 123478999999999885 3454 6778899999999999876 322
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCC-ceEEEccCCCCChhhHHHHHHHHhcC--CCCcEEEccC
Q 007838 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNC--KSLLWINLYM 396 (588)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~ 396 (588)
.+..+++|++|++++|.+.. +...+ ..+++ |++|++++|.++. ++..+... ++|++|++++
T Consensus 348 -----~~~~l~~L~~L~L~~N~l~~-----lp~~l-~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 348 -----AFGSEIKLASLNLAYNQITE-----IPANF-CGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp -----CCEEEEEESEEECCSSEEEE-----CCTTS-EEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCS
T ss_pred -----hhCCCCCCCEEECCCCcccc-----ccHhh-hhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcC
Confidence 46678899999999998762 22222 34566 9999999998884 45444443 3899999999
Q ss_pred CCCChHHHHHHHHHHh-------hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHH---
Q 007838 397 NDIGDEGAEKIADALK-------QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV--- 466 (588)
Q Consensus 397 n~l~~~~~~~l~~~l~-------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--- 466 (588)
|.++.. ++..+. .+++|++|+|++|.++... ...+..+++|+.|+|++|.++......+...
T Consensus 412 N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp----~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 412 NEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFP----KELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp SCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC----THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred CcCCCc----chhhhcccccccccCCCCCEEECcCCccCcCC----HHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 988765 333344 5578999999999988432 1223446899999999998874321111100
Q ss_pred HhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhh------
Q 007838 467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSL------ 540 (588)
Q Consensus 467 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~L------ 540 (588)
++.+++|++|+|++|+++... ..+. ...+++|++|+|++|++.+. |..+..+++|++|+|
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~lp-~~~~--~~~l~~L~~L~Ls~N~l~~i-----------p~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTKLS-DDFR--ATTLPYLVGIDLSYNSFSKF-----------PTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CTTGGGCCEEECCSSCCCBCC-GGGS--TTTCTTCCEEECCSSCCSSC-----------CCGGGGCSSCCEEECCSCBCT
T ss_pred ccccCCccEEECcCCcCCccC-hhhh--hccCCCcCEEECCCCCCCCc-----------ChhhhcCCCCCEEECCCCccc
Confidence 011228999999999998543 2221 01458999999999999864 778889999999999
Q ss_pred hhccchhHHHHHHHHHhhhhccceeeccCCccccCccc
Q 007838 541 CINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNII 578 (588)
Q Consensus 541 s~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~ 578 (588)
++|++.+. ++..+..+ ++|++|||++|.|+.....
T Consensus 550 s~N~l~~~--~p~~l~~l-~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 550 QGNRTLRE--WPEGITLC-PSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp TCCBCCCC--CCTTGGGC-SSCCEEECCSSCCCBCCSC
T ss_pred ccCccccc--ChHHHhcC-CCCCEEECCCCcCCccCHh
Confidence 55777765 44556656 8999999999999766544
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=3e-29 Score=271.08 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=60.0
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
.+++|++|++++|.++.. .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.+...+ ++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~---~~ 116 (549)
T 2z81_A 48 ACANLQVLILKSSRINTI----EGDAFYSLGSLEHLDLSDNHLSSLSS----SWFGPLSSLKYLNLMGNPYQTLG---VT 116 (549)
T ss_dssp SCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCSCCH----HHHTTCTTCCEEECTTCCCSSSC---SS
T ss_pred cCCcccEEECCCCCcCcc----ChhhccccccCCEEECCCCccCccCH----HHhccCCCCcEEECCCCcccccc---hh
Confidence 456666666666666542 22334555666666666666654322 22345566666666666665321 11
Q ss_pred HHHhhCCCCCEEEecCCC-CChhHHHHHHHHHhhCCCccEEEeeccCCC
Q 007838 240 DILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMID 287 (588)
Q Consensus 240 ~~l~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 287 (588)
..+..+++|++|++++|. ++.... ..+..+++|++|++++|.+.
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEEETTCC
T ss_pred hhhhccCCccEEECCCCccccccCH----hhhhcccccCeeeccCCccc
Confidence 234445666666666665 332211 11233455666666666554
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.4e-31 Score=288.27 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=84.2
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|++|++++|.++.. .+..+..+++|++|+|++|.++... ...+..+++|++|++++|.+....
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i----~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~--- 120 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETI----EDKAWHGLHHLSNLILTGNPIQSFS----PGSFSGLTSLENLVAVETKLASLE--- 120 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCCCC----TTSSTTCTTCCEEECTTSCCCCSS---
T ss_pred ccCCccCcEEeCCCCccccc----CHHHhhchhhcCEeECCCCcccccC----hhhcCCcccCCEEEccCCcccccc---
Confidence 45778899999998888753 2345667788999999988876532 234567788999999998876542
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChh
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 289 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 289 (588)
...+..+++|++|++++|.++... ++..+.++++|++|++++|.++..
T Consensus 121 -~~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 121 -SFPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp -SSCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred -ccccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCcceec
Confidence 123566788999999999887421 233456678899999999887653
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.7e-30 Score=288.26 Aligned_cols=369 Identities=14% Similarity=0.171 Sum_probs=267.7
Q ss_pred HHHHcCCccEEEccCCCCCHH-------------HHHHHHHHhh--cCCCccEEEeecCCCCHHHHHHHHHHHhcCCCcc
Q 007838 157 FAKELRAFSSVDMSGRNFGDE-------------GLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221 (588)
Q Consensus 157 ~l~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~ 221 (588)
.+..+++|+.|+|++|.++.. .-..++..+. .+++|++|+|++|.+... ++..+..+++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~ 518 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLPELQ 518 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCSSCC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCCCCC
Confidence 366889999999999999872 1112556655 889999999999986532 345677889999
Q ss_pred EEEccCCC-CCh-HHHHHHHHH---HhhCCCCCEEEecCCCCChhHHHHHHH--HHhhCCCccEEEeeccCCChhhHHHH
Q 007838 222 TLNLSGNP-IGD-EGVKCLCDI---LVDNAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGFTSL 294 (588)
Q Consensus 222 ~L~Ls~n~-i~~-~~~~~l~~~---l~~~~~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l 294 (588)
+|++++|+ ++. .....+... +..+++|++|+|++|.++. ++. .+..+++|++|+|++|.++. +
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~L~~L~~L~Ls~N~l~~-----l 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVRH-----L 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----CCCHHHHTTCTTCCEEECTTSCCCB-----C
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-----cCChhhhhcCCCCCEEECCCCCccc-----c
Confidence 99999998 876 322222222 2335599999999999984 333 56777999999999999862 3
Q ss_pred HHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCC-CCEEEccCCCCChhHHHHHHHHHhc-CCCCceEEEccCCCCC
Q 007838 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSIS 372 (588)
Q Consensus 295 ~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~ 372 (588)
+ .+..+++|+.|++++|.++. ++..+..+++ |++|++++|.+.. +...+.. ..++|+.|++++|.++
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred h-hhcCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCCcCC
Confidence 3 66789999999999999873 3345778888 9999999999873 2111111 1235999999999987
Q ss_pred hhhHHHHHHHHh--cCCCCcEEEccCCCCChHHHHHHHHH-HhhCCCccEEEeeCCcCCHHHHHHHHHH---HhcCCCcC
Q 007838 373 AKGAFHVAEYIK--NCKSLLWINLYMNDIGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARV---LKDNSVIT 446 (588)
Q Consensus 373 ~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l~~~~~L~ 446 (588)
.... .++..+. .+++|+.|+|++|.++. ++.. +..+++|+.|+|++|.++......+... +..+++|+
T Consensus 658 g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 658 SEGR-NISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp TTSS-SCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred Cccc-cchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 6310 0111111 34589999999999985 3333 3467999999999999873211111000 11234899
Q ss_pred EEECcCCCCChHHHHHHHHHHh--hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeec------CCCCcccccC
Q 007838 447 SLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA------NGLRDEVCSG 518 (588)
Q Consensus 447 ~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~------n~l~~~~~~~ 518 (588)
.|+|++|.++. +...+. .+++|+.|+|++|+++.. +.. +..+++|+.|+|++ |++.+.
T Consensus 732 ~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~---- 797 (876)
T 4ecn_A 732 TIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSF-PTQ----PLNSSQLKAFGIRHQRDAEGNRILRQ---- 797 (876)
T ss_dssp EEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSC-CCG----GGGCTTCCEEECCCCBCTTCCBCCCC----
T ss_pred EEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCcc-chh----hhcCCCCCEEECCCCCCccccccccc----
Confidence 99999999883 333444 678999999999999873 222 34559999999987 555555
Q ss_pred CCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCccccccc
Q 007838 519 CNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFPF 582 (588)
Q Consensus 519 ~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~~ 582 (588)
+|..+..+++|+.|+|++|.+.. ++..+. ++|+.|||++|+|.......+++
T Consensus 798 ------ip~~l~~L~~L~~L~Ls~N~L~~---Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 798 ------WPTGITTCPSLIQLQIGSNDIRK---VDEKLT---PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp ------CCTTGGGCSSCCEEECCSSCCCB---CCSCCC---SSSCEEECCSCTTCEEECGGGHH
T ss_pred ------ChHHHhcCCCCCEEECCCCCCCc---cCHhhc---CCCCEEECCCCCCCccChHHccc
Confidence 78899999999999999999943 344333 68999999999998887766654
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=9e-31 Score=286.53 Aligned_cols=368 Identities=16% Similarity=0.120 Sum_probs=190.9
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|++|+|++|.++.. .+..+..+++|++|++++|.++..... .+..+++|++|++++|.+....
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~--- 144 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCK--- 144 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCC----CTTSSTTCTTCCEEECTTSCCCCSSSS----CCTTCTTCCEEECCSSCCCCCC---
T ss_pred hhchhhcCEeECCCCccccc----ChhhcCCcccCCEEEccCCcccccccc----ccCCCCCCCEEeCCCCccccee---
Confidence 34677888888888877653 244566678888888888877543211 2456677888888888776421
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHh-----------------------hCCCccEEEeeccCCChhhHHHH
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-----------------------NNSILRVLELNNNMIDYSGFTSL 294 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-----------------------~~~~L~~L~Ls~n~l~~~~~~~l 294 (588)
++..+..+++|++|++++|.++......+...-. ...+|++|++++|.+... .+
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~---~~ 221 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN---IM 221 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH---HH
T ss_pred chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh---HH
Confidence 3455666788888888888776644333333211 112577777777776532 22
Q ss_pred HHHHhhC--------------------------------------------------------CCcceeecCCCCCChhH
Q 007838 295 AEALLEN--------------------------------------------------------STIRSLHLNGNYGGALG 318 (588)
Q Consensus 295 ~~~l~~~--------------------------------------------------------~~L~~L~L~~~~~~~~~ 318 (588)
+..+..+ ++|+.|++++|.++...
T Consensus 222 ~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC
T ss_pred HHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh
Confidence 2222222 22333333333222111
Q ss_pred HHHHHHHhh---------------------cCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHH
Q 007838 319 ANALAKGLE---------------------GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (588)
Q Consensus 319 ~~~l~~~l~---------------------~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (588)
.+. .+++|++|++++|...... -...+++|++|++++|.++..+.
T Consensus 302 ------~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~~~~- 367 (606)
T 3vq2_A 302 ------DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF-------KKVALPSLSYLDLSRNALSFSGC- 367 (606)
T ss_dssp ------CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC-------CCCCCTTCCEEECCSSCEEEEEE-
T ss_pred ------hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch-------hhccCCCCCEEECcCCccCCCcc-
Confidence 122 2333444444444221110 01245677778887777664310
Q ss_pred HHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCCh
Q 007838 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (588)
Q Consensus 378 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (588)
++..+..+++|++|++++|.++.. ...+..+++|++|++++|.++.... ...+..+++|+.|++++|.++.
T Consensus 368 -~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 368 -CSYSDLGTNSLRHLDLSFNGAIIM-----SANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp -CCHHHHCCSCCCEEECCSCSEEEE-----CCCCTTCTTCCEEECTTSEEESTTT---TTTTTTCTTCCEEECTTSCCEE
T ss_pred -hhhhhccCCcccEeECCCCccccc-----hhhccCCCCCCeeECCCCccCCccC---hhhhhccccCCEEECcCCCCCc
Confidence 123456677777777777766542 2334455666666666666553311 0223444666666666665544
Q ss_pred HHHHHHHHHHhhCCCccEEEcccCCCChh-HHHHHHHHHhcCCcccEEEeecCCCCcccccC---C----------CCch
Q 007838 458 DGAKALSEVLKFHGNINTLKLGWCQIGAS-GAEFVADMLRYNNTISILDLRANGLRDEVCSG---C----------NGLS 523 (588)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~---~----------~~l~ 523 (588)
... ..+..+++|++|++++|.+++. .+.. +..+++|++|+|++|++.+..+.. + +.+.
T Consensus 439 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 439 DFD----GIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CCT----TTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cch----hhhcCCCCCCEEECCCCcCCCcchHHh----hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 321 1223345555555555554431 1111 222355555555555555442110 0 0111
Q ss_pred h-hhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccc
Q 007838 524 F-FHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 524 ~-~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~ 573 (588)
. .|..+.++++|+.|+|++|+++. ++..+.....+|+.|++++|++.
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~~---~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIET---SKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCCC---EESCGGGSCTTCCEEECCSCCCC
T ss_pred CcCHHHccCCCcCCEEECCCCcCcc---cCHhHhhhcccCcEEEccCCCcc
Confidence 1 35666666677777777776664 22223333124677777776665
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.9e-30 Score=288.03 Aligned_cols=349 Identities=15% Similarity=0.179 Sum_probs=239.1
Q ss_pred HHHHhhcCCCccEEEeecCCCCHHHH-------------HHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCC
Q 007838 182 LAESLGYNQTAEEVSFAANGITAAGI-------------KAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNA 246 (588)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~i~~~~~-------------~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 246 (588)
++..+..+++|++|+|++|.++...+ ..++..+. .+++|++|+|++|.+... ++..+..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~ 515 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLP 515 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCC
Confidence 34456778899999999998875210 12444444 788899999999876654 456677788
Q ss_pred CCCEEEecCCC-CCh-hHHHHHHHHH---hhCCCccEEEeeccCCChhhHHHHHH--HHhhCCCcceeecCCCCCChhHH
Q 007838 247 GVERLQLSSVD-LRD-EGAKAIAELL---KNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGGALGA 319 (588)
Q Consensus 247 ~L~~L~L~~~~-l~~-~~~~~l~~~l---~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~~~~~ 319 (588)
+|++|+|++|+ ++. ..+..+..+- ..+++|++|++++|.+. .++. .+.++++|+.|++++|.++...
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~l~~L~~L~~L~Ls~N~l~~lp- 589 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----EFPASASLQKMVKLGLLDCVHNKVRHLE- 589 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----BCCCHHHHTTCTTCCEEECTTSCCCBCC-
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----ccCChhhhhcCCCCCEEECCCCCcccch-
Confidence 99999999997 776 4444444432 34568999999999885 2344 6778889999999999887332
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCC-ceEEEccCCCCChhhHHHHHHHHhcCC--CCcEEEccC
Q 007838 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNCK--SLLWINLYM 396 (588)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~ 396 (588)
.+..+++|++|++++|.+.. +...+ ..+++ |+.|++++|.++. ++..+.... +|+.|+|++
T Consensus 590 -----~~~~L~~L~~L~Ls~N~l~~-----lp~~l-~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 590 -----AFGTNVKLTDLKLDYNQIEE-----IPEDF-CAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp -----CCCTTSEESEEECCSSCCSC-----CCTTS-CEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCS
T ss_pred -----hhcCCCcceEEECcCCcccc-----chHHH-hhccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcC
Confidence 46778899999999998873 22222 24556 9999999998874 444444443 489999999
Q ss_pred CCCChHHHHHHHHHHh--hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHH---HhhCC
Q 007838 397 NDIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV---LKFHG 471 (588)
Q Consensus 397 n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l~~~~ 471 (588)
|.++... ..+...+. .+++|+.|+|++|.++... ...+..+++|+.|+|++|.|+......+... ++.++
T Consensus 654 N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp----~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 654 NKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQKFP----TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp SCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCSCC----HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred CcCCCcc-ccchhhhccccCCCcCEEEccCCcCCccC----HHHHccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 9887531 00111111 2358999999999888422 1223356889999999998873221111100 11223
Q ss_pred CccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhh------ccc
Q 007838 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCI------NYL 545 (588)
Q Consensus 472 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~------n~l 545 (588)
+|++|+|++|+++... ..+. ...+++|+.|+|++|++.+. |..+..+++|+.|+|++ |++
T Consensus 729 ~L~~L~Ls~N~L~~lp-~~l~--~~~l~~L~~L~Ls~N~L~~l-----------p~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLS-DDFR--ATTLPYLSNMDVSYNCFSSF-----------PTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp GCCEEECCSSCCCCCC-GGGS--TTTCTTCCEEECCSSCCSSC-----------CCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred CccEEECCCCCCccch-HHhh--hccCCCcCEEEeCCCCCCcc-----------chhhhcCCCCCEEECCCCCCcccccc
Confidence 8999999999988442 2221 01458999999999998864 77888999999999976 777
Q ss_pred hhHHHHHHHHHhhhhccceeeccCCccccCccc
Q 007838 546 QGAKCLAQSFKVVNEALTSIDLAFNEIRVSNII 578 (588)
Q Consensus 546 ~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~ 578 (588)
.+. ++..+..+ ++|+.|+|++|.|+.....
T Consensus 795 ~~~--ip~~l~~L-~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 795 LRQ--WPTGITTC-PSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp CCC--CCTTGGGC-SSCCEEECCSSCCCBCCSC
T ss_pred ccc--ChHHHhcC-CCCCEEECCCCCCCccCHh
Confidence 765 44556655 8999999999999665544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.8e-29 Score=264.85 Aligned_cols=365 Identities=15% Similarity=0.108 Sum_probs=266.5
Q ss_pred cEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhh
Q 007838 165 SSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244 (588)
Q Consensus 165 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 244 (588)
+.++.+++.++. ++. -.++|++|+|++|.++.... ..+..+++|++|++++|.+.... -...+..
T Consensus 13 ~~~~c~~~~l~~-----lp~---l~~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~ 77 (455)
T 3v47_A 13 YNAICINRGLHQ-----VPE---LPAHVNYVDLSLNSIAELNE----TSFSRLQDLQFLKVEQQTPGLVI---RNNTFRG 77 (455)
T ss_dssp TEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCCEECT----TTTSSCTTCCEEECCCCSTTCEE---CTTTTTT
T ss_pred cccCcCCCCccc-----CCC---CCCccCEEEecCCccCcCCh----hHhccCccccEEECcCCcccceE---Ccccccc
Confidence 356777777655 332 23789999999999975422 34567889999999999875321 1244567
Q ss_pred CCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHH--HhhCCCcceeecCCCCCChhHHHHH
Q 007838 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA--LLENSTIRSLHLNGNYGGALGANAL 322 (588)
Q Consensus 245 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~--l~~~~~L~~L~L~~~~~~~~~~~~l 322 (588)
+++|++|+|++|.++.... ..+..+++|++|++++|.+++ .++.. +..+++|++|++++|.++.....
T Consensus 78 l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 147 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLET----GAFNGLANLEVLTLTQCNLDG----AVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-- 147 (455)
T ss_dssp CTTCCEEECTTCTTCEECT----TTTTTCTTCCEEECTTSCCBT----HHHHSSTTTTCTTCCEEECCSSBCCSCCCC--
T ss_pred cccCCEEeCCCCccCccCh----hhccCcccCCEEeCCCCCCCc----cccCcccccCcccCCEEECCCCccCccCcc--
Confidence 8999999999999987533 334566899999999999974 22333 67789999999999988754321
Q ss_pred HHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHH----HHHhcCCCCcEEEccCCC
Q 007838 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA----EYIKNCKSLLWINLYMND 398 (588)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~L~~L~L~~n~ 398 (588)
..+..+++|++|++++|.+.+.....+.. -...+|+.|++++|.+.+.....+. ..+..+++|++|++++|.
T Consensus 148 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 148 -SFFLNMRRFHVLDLTFNKVKSICEEDLLN---FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp -GGGGGCTTCCEEECTTCCBSCCCTTTSGG---GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred -cccCCCCcccEEeCCCCcccccChhhhhc---cccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 12568899999999999887643322211 0225899999999988764221111 112345789999999999
Q ss_pred CChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHH----------HHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA----------SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
+++.....+...+ ...+|+.|++++|.+..... ..+.. ...++|+.|++++|.+++.. ...+.
T Consensus 224 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----~~~~~ 296 (455)
T 3v47_A 224 FKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALL----KSVFS 296 (455)
T ss_dssp CCHHHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEEC----TTTTT
T ss_pred ccccchhhhhccc-cccceeeEeeccccccccccchhhhccCccccccc--ccccCceEEEecCccccccc----hhhcc
Confidence 9988666665543 34899999999985432210 00000 12368999999999998753 33446
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
.+++|++|++++|+++...+..+..+ ++|++|+|++|.+.+. .+..+..+++|++|+|++|++++.
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGL----THLLKLNLSQNFLGSI----------DSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCEE----------CGGGGTTCTTCCEEECCSSCCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCc----ccCCEEECCCCccCCc----------ChhHhcCcccCCEEECCCCccccc
Confidence 67899999999999998766555544 9999999999999877 678899999999999999999875
Q ss_pred HHHHHHHHhhhhccceeeccCCccccCccccccc
Q 007838 549 KCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFPF 582 (588)
Q Consensus 549 ~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~~ 582 (588)
.+..+..+ ++|++|+|++|+|+......+..
T Consensus 363 --~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 363 --GDQSFLGL-PNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp --CTTTTTTC-TTCCEEECCSSCCSCCCTTTTTT
T ss_pred --Chhhcccc-ccccEEECCCCccccCCHhHhcc
Confidence 33455555 89999999999999877655443
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.2e-29 Score=281.46 Aligned_cols=380 Identities=17% Similarity=0.185 Sum_probs=188.5
Q ss_pred HHHHcCCccEEEccCCCCCHHHHHHHHH-HhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 007838 157 FAKELRAFSSVDMSGRNFGDEGLFFLAE-SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (588)
Q Consensus 157 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~-~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 235 (588)
.+..+++|+.|+|++|.++. +.. .+..+++|++|++++|.++.... ..+..+++|++|++++|.+....
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~- 137 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQ-----LSDKTFAFCTNLTELHLMSNSIQKIKN----NPFVKQKNLITLDLSHNGLSSTK- 137 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCS----CTTTTCTTCCEEECCSSCCSCCC-
T ss_pred HHhcccCcCEEECCCCccCc-----cChhhhccCCCCCEEECCCCccCccCh----hHccccCCCCEEECCCCcccccC-
Confidence 34566777777777776654 222 35566777777777776653221 22355667777777777665431
Q ss_pred HHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCC
Q 007838 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (588)
Q Consensus 236 ~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 315 (588)
...+..+++|++|++++|.++......+.. ..+++|++|++++|.+.... +..+..+.+|+.|++.++.+.
T Consensus 138 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 138 ---LGTQVQLENLQELLLSNNKIQALKSEELDI--FANSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp ---CCSSSCCTTCCEEECCSSCCCCBCHHHHGG--GTTCEESEEECTTCCCCCBC----TTGGGGSSEECEEECTTCCCH
T ss_pred ---chhhcccccCCEEEccCCcccccCHHHhhc--cccccccEEECCCCcccccC----hhhhhhhhhhhhhhccccccC
Confidence 223345677777777777766543332221 13356777777777654321 222233344444444444333
Q ss_pred hhHHHHHHHH-----------------------hhcC--CCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCC
Q 007838 316 ALGANALAKG-----------------------LEGN--KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370 (588)
Q Consensus 316 ~~~~~~l~~~-----------------------l~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 370 (588)
......+... +..+ ++|++|++++|.+.......+ ..+++|++|++++|.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-----AWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSCC
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc-----cCcccccEeeCCCCc
Confidence 2222222221 1222 235555555555543221112 244556666666655
Q ss_pred CChhhHHHHHHHHhcCCCCcEEEccCCCCChH-HHHHHHH----HHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCc
Q 007838 371 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE-GAEKIAD----ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (588)
Q Consensus 371 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 445 (588)
++.. .+..+..+++|++|++++|..... ....++. .+..+++|++|++++|.++... ...+..+++|
T Consensus 284 l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L 355 (680)
T 1ziw_A 284 IQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINL 355 (680)
T ss_dssp BSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTC
T ss_pred cCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC----hhHhccccCC
Confidence 5543 222334444555555544322210 0000100 2334566666666666665431 2223444556
Q ss_pred CEEECcCCC----------------------------CChHHHHHHHHHHhhCCCccEEEcccCCCChhHH-HHHHHHHh
Q 007838 446 TSLDLAYNP----------------------------IGADGAKALSEVLKFHGNINTLKLGWCQIGASGA-EFVADMLR 496 (588)
Q Consensus 446 ~~L~Ls~n~----------------------------i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~l~ 496 (588)
++|++++|. ++... ...+..+++|++|++++|.+++..+ .. +.
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~ 427 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE----SDAFSWLGHLEVLDLGLNEIGQELTGQE----WR 427 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCEEECCSGG----GT
T ss_pred cEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC----hhhhhCCCCCCEEeCCCCcCccccCccc----cc
Confidence 666655553 22211 1112233444445554444432111 11 22
Q ss_pred cCCcccEEEeecCCCCcccccC---CC-------------CchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhh
Q 007838 497 YNNTISILDLRANGLRDEVCSG---CN-------------GLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNE 560 (588)
Q Consensus 497 ~~~~L~~L~L~~n~l~~~~~~~---~~-------------~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~ 560 (588)
.+++|++|++++|++.+..+.. ++ .+...|..+..+++|++|+|++|++++. ....+..+ +
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~l-~ 504 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI--NDDMLEGL-E 504 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC--CTTTTTTC-T
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC--Chhhhccc-c
Confidence 2345555555555443322111 11 1234567788888888888888888764 22334444 7
Q ss_pred ccceeeccCCccccCcccc
Q 007838 561 ALTSIDLAFNEIRVSNIIF 579 (588)
Q Consensus 561 ~L~~L~ls~N~i~~~~~~~ 579 (588)
+|++|++++|.|+.....+
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp TCCEEECCSSCCGGGGSTT
T ss_pred ccCEEeCCCCCccccchhh
Confidence 7888888888887654433
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.6e-28 Score=265.46 Aligned_cols=369 Identities=13% Similarity=0.127 Sum_probs=220.5
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
++|++|+|++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.+.... ...
T Consensus 26 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI----GHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLS----SSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEE----CSSTTSSCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCSCC----HHH
T ss_pred CCccEEECcCCccCcc----ChhhhhcCCcccEEECCCCCcCccCh----hhccccccCCEEECCCCccCccC----HHH
Confidence 6899999999998764 23456778999999999999875432 33567889999999999998763 445
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccC-CChhhHHHHHHHHhhCCCcceeecCCCCCChhHHH
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~ 320 (588)
+..+++|++|++++|.++..+. ...+..+++|++|++++|. ++... ...+..+++|++|++++|.++...
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~-- 164 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGV---TSLFPNLTNLQTLRIGNVETFSEIR----RIDFAGLTSLNELEIKALSLRNYQ-- 164 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEEC--
T ss_pred hccCCCCcEEECCCCcccccch---hhhhhccCCccEEECCCCccccccC----HhhhhcccccCeeeccCCcccccC--
Confidence 6778999999999999875321 1234567899999999997 43211 234567889999999998876532
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCCh---------------------------
Q 007838 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--------------------------- 373 (588)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~--------------------------- 373 (588)
+..+..+++|++|++++|.+.... ..+...+++|++|++++|.++.
T Consensus 165 --~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 165 --SQSLKSIRDIHHLTLHLSESAFLL-----EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp --TTTTTTCSEEEEEEEECSBSTTHH-----HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred --hhhhhccccCceEecccCcccccc-----hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 233455666666666666554321 1111234556666666655544
Q ss_pred hhHHHHHHHHhcCCCCcEEEccCCCCChHH-------------------------------HHHHHHHHhhCCCccEEEe
Q 007838 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEG-------------------------------AEKIADALKQNRTITTIDL 422 (588)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-------------------------------~~~l~~~l~~~~~L~~L~L 422 (588)
.....+...+..+++|+.|++++|.+...+ ...+........+|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 333333333333444444444443221100 0000000111245555555
Q ss_pred eCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCccc
Q 007838 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS 502 (588)
Q Consensus 423 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 502 (588)
++|.++.... ..+..+++|++|++++|.+++..+.. ...+..+++|++|++++|+++..... ...+..+++|+
T Consensus 318 ~~n~l~~ip~----~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~l~~L~ 390 (549)
T 2z81_A 318 ENSKVFLVPC----SFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKT--GEILLTLKNLT 390 (549)
T ss_dssp ESSCCCCCCH----HHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHHH--HHHGGGCTTCC
T ss_pred ccCccccCCH----HHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccccc--hhhhhcCCCCC
Confidence 5555542211 11134578888888888887653321 11234567888888888888765321 12244558888
Q ss_pred EEEeecCCCCcccccCC---C----------CchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccC
Q 007838 503 ILDLRANGLRDEVCSGC---N----------GLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF 569 (588)
Q Consensus 503 ~L~L~~n~l~~~~~~~~---~----------~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~ 569 (588)
+|++++|++... |..+ + .+..++..+ .++|++|+|++|++++.. ..+ ++|++|||++
T Consensus 391 ~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~------~~l-~~L~~L~Ls~ 460 (549)
T 2z81_A 391 SLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS------LFL-PRLQELYISR 460 (549)
T ss_dssp EEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC------CCC-TTCCEEECCS
T ss_pred EEECCCCCCccC-ChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc------ccC-ChhcEEECCC
Confidence 888888887743 2211 1 111112111 146666666666666531 122 6788888888
Q ss_pred CccccC
Q 007838 570 NEIRVS 575 (588)
Q Consensus 570 N~i~~~ 575 (588)
|+|+..
T Consensus 461 N~l~~i 466 (549)
T 2z81_A 461 NKLKTL 466 (549)
T ss_dssp SCCSSC
T ss_pred CccCcC
Confidence 887743
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.1e-29 Score=270.54 Aligned_cols=364 Identities=16% Similarity=0.120 Sum_probs=181.6
Q ss_pred HHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007838 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (588)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 238 (588)
..+++|++|+|++|.++.. .+..+..+++|++|++++|.++.... . .+++|++|++++|.+.... +
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~--~l~~L~~L~Ls~N~l~~l~---~ 138 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSL----DFHVFLFNQDLEYLDVSHNRLQNISC-----C--PMASLRHLDLSFNDFDVLP---V 138 (562)
T ss_dssp TTCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECTTSCCCEECS-----C--CCTTCSEEECCSSCCSBCC---C
T ss_pred ccCCCccEEECCCCCCCcC----CHHHhCCCCCCCEEECCCCcCCccCc-----c--ccccCCEEECCCCCccccC---c
Confidence 3556666666666666542 12334455666666666666653211 1 4556666666666665421 1
Q ss_pred HHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCc--cEEEeeccCC--ChhhHHHHHH------------------
Q 007838 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSGFTSLAE------------------ 296 (588)
Q Consensus 239 ~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L--~~L~Ls~n~l--~~~~~~~l~~------------------ 296 (588)
+..+..+++|++|++++|.++.... ..++.| ++|++++|.+ +......+..
T Consensus 139 p~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~ 211 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAKFRQLDL-------LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211 (562)
T ss_dssp CGGGGGCTTCCEEEEECSBCCTTTT-------GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCC
T ss_pred hHhhcccCcccEEecCCCccccCch-------hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhh
Confidence 2344555666666666666654221 112333 6666666655 2110000000
Q ss_pred ----HHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCC
Q 007838 297 ----ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (588)
Q Consensus 297 ----~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 372 (588)
.+..+++|+.|++++|.............+..++.|+.|++.++.+.+..+..+...+. .++|++|++++|.++
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTIT 289 (562)
T ss_dssp CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEEC
T ss_pred hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEee
Confidence 00112344455555443222223333344556666666777666666655555544432 235666666666544
Q ss_pred hhh---H-------------------------HHHHHHH---------------------hcCCCCcEEEccCCCCChHH
Q 007838 373 AKG---A-------------------------FHVAEYI---------------------KNCKSLLWINLYMNDIGDEG 403 (588)
Q Consensus 373 ~~~---~-------------------------~~l~~~l---------------------~~~~~L~~L~L~~n~l~~~~ 403 (588)
+.. . ..+...+ ..+++|++|++++|.+++.
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~- 368 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS- 368 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-
T ss_pred ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc-
Confidence 210 0 0111111 2344555555555555442
Q ss_pred HHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCC
Q 007838 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (588)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (588)
++..+..+++|++|++++|+++.. ..++..+..+++|+.|++++|.++..... ..+..+++|++|++++|++
T Consensus 369 ---~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 369 ---VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAESILVLNLSSNML 440 (562)
T ss_dssp ---TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSCCSS---CCCCCCTTCCEEECCSSCC
T ss_pred ---hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCccCh---hhhcCcccCCEEECCCCCC
Confidence 223334445555555555555431 12333344445555555555554431000 0112234555555555555
Q ss_pred ChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccc
Q 007838 484 GASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALT 563 (588)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~ 563 (588)
++..+..+. ++|++|+|++|++. .+|..+..+++|++|+|++|++++... ..+..+ ++|+
T Consensus 441 ~~~~~~~l~------~~L~~L~L~~N~l~-----------~ip~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l-~~L~ 500 (562)
T 3a79_B 441 TGSVFRCLP------PKVKVLDLHNNRIM-----------SIPKDVTHLQALQELNVASNQLKSVPD--GVFDRL-TSLQ 500 (562)
T ss_dssp CGGGGSSCC------TTCSEEECCSSCCC-----------CCCTTTTSSCCCSEEECCSSCCCCCCT--TSTTTC-TTCC
T ss_pred Ccchhhhhc------CcCCEEECCCCcCc-----------ccChhhcCCCCCCEEECCCCCCCCCCH--HHHhcC-CCCC
Confidence 433221110 35555555555555 347767788899999999998886321 124444 7888
Q ss_pred eeeccCCcccc
Q 007838 564 SIDLAFNEIRV 574 (588)
Q Consensus 564 ~L~ls~N~i~~ 574 (588)
.|++++|++..
T Consensus 501 ~L~l~~N~~~c 511 (562)
T 3a79_B 501 YIWLHDNPWDC 511 (562)
T ss_dssp CEECCSCCBCC
T ss_pred EEEecCCCcCC
Confidence 99999988764
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.7e-28 Score=263.27 Aligned_cols=373 Identities=15% Similarity=0.145 Sum_probs=234.8
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
++|++|+|++|.++.. .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.++.. +..
T Consensus 21 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~l-----p~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISEL----WTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKLVKI-----SCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCC----CHHHHTTCTTCCEEECCSSCCCEEEG----GGGTTCTTCCEEECCSSCCCEE-----ECC
T ss_pred ccccEEECCCCccccc----ChhhccccccccEEecCCCccCCcCh----HHhhcccCCCEEecCCCceeec-----Ccc
Confidence 6788999999888754 23456677889999999998875422 3456778899999999988743 222
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCc--ceeecCCCCC--Chh
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L--~~L~L~~~~~--~~~ 317 (588)
.+++|++|++++|.++... ++..+..+++|++|++++|.+... .+..+++| ++|++++|.+ +..
T Consensus 88 --~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred --ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccc
Confidence 5688999999998887521 123345668899999999888752 23456666 8888888876 222
Q ss_pred HHHHHHH----------------------HhhcCCCCCEEEccCCCC--ChhHHHHHHHHHhcCCCCceEEEccCCCCCh
Q 007838 318 GANALAK----------------------GLEGNKSLRELHLHGNSI--GDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (588)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (588)
....+.. .+..+++|+.|++++|.- ....+......+ ..+++|+.|++++|.+++
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGG-GGCTTCCEEEEEEEEEEH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhh-ccccchhhccccccccCH
Confidence 1111111 112355666777766641 111111122222 356678888888888877
Q ss_pred hhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHH-----hhCC--------------------------CccEEEe
Q 007838 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-----KQNR--------------------------TITTIDL 422 (588)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-----~~~~--------------------------~L~~L~L 422 (588)
.....+...+. .++|++|++++|.+++. ++..+ ..++ +|+.|++
T Consensus 235 ~~~~~~~~~~~-~~~L~~L~l~~n~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 235 NSFIRILQLVW-HTTVWYFSISNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp HHHHHHHHHHH-TSSCSEEEEEEEEEESC----CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred HHHHHHHHHhh-hCcccEEEeecccccCc----cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 66555554432 46788888877765532 11111 2233 4445555
Q ss_pred eCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCccc
Q 007838 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS 502 (588)
Q Consensus 423 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 502 (588)
++|.+..... ...+++|++|++++|.+++..+ ..+..+++|++|++++|+++..+ .+...+..+++|+
T Consensus 310 ~~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 310 SGTRMVHMLC------PSKISPFLHLDFSNNLLTDTVF----ENCGHLTELETLILQMNQLKELS--KIAEMTTQMKSLQ 377 (520)
T ss_dssp ESSCCCCCCC------CSSCCCCCEEECCSSCCCTTTT----TTCCCCSSCCEEECCSSCCCBHH--HHHHHHTTCTTCC
T ss_pred CCCccccccc------hhhCCcccEEEeECCccChhhh----hhhccCCCCCEEEccCCccCccc--cchHHHhhCCCCC
Confidence 5444432210 1466899999999999987533 33466789999999999998742 2334455669999
Q ss_pred EEEeecCCCCcccccC----CCCchhh--------hhhHhhh-hcccchhhhhccchhHHHHHHHHHhhhhccceeeccC
Q 007838 503 ILDLRANGLRDEVCSG----CNGLSFF--------HSAIYSL-KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF 569 (588)
Q Consensus 503 ~L~L~~n~l~~~~~~~----~~~l~~~--------~~~~~~l-~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~ 569 (588)
+|++++|.+.+.+|.. ++.|+.+ ......+ ++|+.|+|++|+++. ++..+..+ ++|++|+|++
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~---ip~~~~~l-~~L~~L~L~~ 453 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS---IPKQVVKL-EALQELNVAS 453 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC---CCGGGGGC-TTCCEEECCS
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc---cchhhhcC-CCCCEEECCC
Confidence 9999999999854432 2222211 0111122 678888888888774 33333334 7788888888
Q ss_pred CccccCcccccc
Q 007838 570 NEIRVSNIIFFP 581 (588)
Q Consensus 570 N~i~~~~~~~l~ 581 (588)
|+|+......+.
T Consensus 454 N~l~~l~~~~~~ 465 (520)
T 2z7x_B 454 NQLKSVPDGIFD 465 (520)
T ss_dssp SCCCCCCTTTTT
T ss_pred CcCCccCHHHhc
Confidence 888765554333
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.4e-27 Score=250.52 Aligned_cols=314 Identities=16% Similarity=0.136 Sum_probs=215.4
Q ss_pred HHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007838 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (588)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 238 (588)
..+++|++|++++|.+++. + .+..+++|++|++++|.++... +..+++|++|++++|.++...
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-----~-~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-----T-GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-----T-TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC----
T ss_pred hHcCCCCEEEccCCCcccC-----h-hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee----
Confidence 3679999999999998763 2 4677899999999999987641 567889999999999988641
Q ss_pred HHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCC-CChh
Q 007838 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGAL 317 (588)
Q Consensus 239 ~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-~~~~ 317 (588)
+..+++|++|++++|.++... +..+++|++|++++|+++.. .+..+++|++|++++|. ++..
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC
T ss_pred ---cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc
Confidence 567899999999999988742 45678999999999998752 25678999999999994 4332
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC
Q 007838 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (588)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 397 (588)
.+..+++|++|++++|.+++.. + ..+++|+.|++++|.++.. .+..+++|++|++++|
T Consensus 165 -------~~~~l~~L~~L~ls~n~l~~l~---l-----~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 -------DVTPQTQLTTLDCSFNKITELD---V-----SQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp -------CCTTCTTCCEEECCSSCCCCCC---C-----TTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSS
T ss_pred -------ccccCCcCCEEECCCCccceec---c-----ccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCC
Confidence 2567889999999999887742 2 4667899999999998874 2578899999999999
Q ss_pred CCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEE
Q 007838 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477 (588)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 477 (588)
.+++. + +..+++|++|++++|+++... +..+++|+.|++++|. |+.|+
T Consensus 223 ~l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~------------------L~~L~ 270 (457)
T 3bz5_A 223 KLTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTD------------------LLEID 270 (457)
T ss_dssp CCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCC------------------CSCCC
T ss_pred ccccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCC------------------CCEEE
Confidence 98873 2 567889999999999988642 3445777777776653 33444
Q ss_pred cccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHh
Q 007838 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKV 557 (588)
Q Consensus 478 L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~ 557 (588)
+++|.+....+ +..+++|+.|++++|...+.+|..++.+..+. +.++++|++|++++|++++. . +..
T Consensus 271 l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l---~--l~~ 337 (457)
T 3bz5_A 271 LTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTEL---D--VSH 337 (457)
T ss_dssp CTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCC---C--CTT
T ss_pred CCCCccCCccc------ccccccCCEEECCCCcccceeccCCCcceEec--hhhcccCCEEECCCCccccc---c--ccc
Confidence 44444222111 11234455555555554444444444444332 44445555555555555442 0 222
Q ss_pred hhhccceeeccCCcccc
Q 007838 558 VNEALTSIDLAFNEIRV 574 (588)
Q Consensus 558 ~~~~L~~L~ls~N~i~~ 574 (588)
+ +.|+.||+++|+|++
T Consensus 338 l-~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 338 N-TKLKSLSCVNAHIQD 353 (457)
T ss_dssp C-TTCSEEECCSSCCCB
T ss_pred C-CcCcEEECCCCCCCC
Confidence 2 445555555555443
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=5.5e-29 Score=276.05 Aligned_cols=377 Identities=17% Similarity=0.125 Sum_probs=232.5
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|++|+|++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.+....
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~--- 113 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKL----EPELCQKLPMLKVLNLQHNELSQLSD----KTFAFCTNLTELHLMSNSIQKIK--- 113 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCC----CTTHHHHCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCC---
T ss_pred HhCCCcCcEEECCCCccCcc----CHHHHhcccCcCEEECCCCccCccCh----hhhccCCCCCEEECCCCccCccC---
Confidence 45678888888888877653 23344556888888888887764321 13456778888888888776431
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChh
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 317 (588)
...+..+++|++|++++|.++.... ..+..+++|++|++++|.++......+. ...+++|++|++++|.++..
T Consensus 114 -~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 114 -NNPFVKQKNLITLDLSHNGLSSTKL----GTQVQLENLQELLLSNNKIQALKSEELD--IFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp -SCTTTTCTTCCEEECCSSCCSCCCC----CSSSCCTTCCEEECCSSCCCCBCHHHHG--GGTTCEESEEECTTCCCCCB
T ss_pred -hhHccccCCCCEEECCCCcccccCc----hhhcccccCCEEEccCCcccccCHHHhh--ccccccccEEECCCCccccc
Confidence 2345567888888888887765422 2234567788888888877643222111 12357888888888877654
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcC--CCCcEEEcc
Q 007838 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC--KSLLWINLY 395 (588)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~L~~L~L~ 395 (588)
.. ..+..+++|+.|++.++.+.......++..+. .++|+.|++++|.+++. .+..+..+ ++|++|+++
T Consensus 187 ~~----~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~--~~~L~~L~L~~n~l~~~----~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 187 SP----GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA--NTSIRNLSLSNSQLSTT----SNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp CT----TGGGGSSEECEEECTTCCCHHHHHHHHHHHHT--TSCCCEEECTTSCCCEE----CTTTTGGGGGSCCCEEECT
T ss_pred Ch----hhhhhhhhhhhhhccccccChhhHHHHHHHhh--hccccEEEccCCccccc----ChhHhhccCcCCCCEEECC
Confidence 32 33556778888888888887766666655543 36899999999988775 23334444 359999999
Q ss_pred CCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHH-HHHHHH----HHhhC
Q 007838 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG-AKALSE----VLKFH 470 (588)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~----~l~~~ 470 (588)
+|.++.. ....+..+++|++|++++|.++.. ....+..+++|+.|++++|...... ...+.. .+..+
T Consensus 257 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 257 YNNLNVV----GNDSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp TSCCCEE----CTTTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCcCcc----CcccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 9988865 234466789999999999988754 2334455677777777765332110 000000 23445
Q ss_pred CCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccc-cc----------------CCCCchh-hhhhHhhh
Q 007838 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEV-CS----------------GCNGLSF-FHSAIYSL 532 (588)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~----------------~~~~l~~-~~~~~~~l 532 (588)
++|++|++++|.++......+. .+++|++|++++|.+.... +. .-+.+.. .+..+..+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFT----GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTT----TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCEEECCCCccCCCChhHhc----cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 6777777777776665443333 3366666666666543221 00 0112222 24566777
Q ss_pred hcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCc
Q 007838 533 KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSN 576 (588)
Q Consensus 533 ~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~ 576 (588)
++|+.|+|++|.+++..+ ...+..+ ++|++|++++|+++...
T Consensus 405 ~~L~~L~L~~N~l~~~~~-~~~~~~l-~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELT-GQEWRGL-ENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp TTCCEEECCSSCCEEECC-SGGGTTC-TTCCEEECCSCSEEECC
T ss_pred CCCCEEeCCCCcCccccC-cccccCc-ccccEEecCCCCcceeC
Confidence 777777777777664211 1223333 56777777777665543
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.9e-29 Score=285.60 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=66.3
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|+.|+|++|.+... .+..+..+++|++|+|++|.++...... ..+..+++|++|++++|.+....
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~--- 139 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLY--- 139 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCC---
T ss_pred hcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccc---
Confidence 34567777777777776543 2445556677777777777765321110 11445667777777777765432
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCC
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMI 286 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 286 (588)
....+.++++|++|++++|.++......+..... ++|+.|++++|.+
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l 186 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSL 186 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBS
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcc
Confidence 1234556677777777777766543333333211 3455555554444
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.8e-30 Score=278.69 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=79.3
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|++|+|++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.+.....
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~-- 117 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLEN-- 117 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTSCCCCSTT--
T ss_pred hhCCCCceEEECCCCcCCcc----CcccccCchhCCEEeCcCCcCCccCH----hhhcCccccccccccccccccCCC--
Confidence 34567777777777766542 12335556777777777776654322 234456667777777776654321
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCc----ceeecCCCC
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI----RSLHLNGNY 313 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L----~~L~L~~~~ 313 (588)
..+..+++|++|++++|.++... ++..+.++++|++|++++|.+.... +..+..+.+| ++|++++|.
T Consensus 118 --~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 118 --FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIY----CTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp --CSCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEEC----GGGGHHHHTCTTCCCEEECTTCC
T ss_pred --ccccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceec----HHHccchhccchhhhhcccCCCC
Confidence 12445677777777777665421 1223445567777777777665322 1222333444 667777776
Q ss_pred CC
Q 007838 314 GG 315 (588)
Q Consensus 314 ~~ 315 (588)
++
T Consensus 189 l~ 190 (570)
T 2z63_A 189 MN 190 (570)
T ss_dssp CC
T ss_pred ce
Confidence 54
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=9.6e-29 Score=267.66 Aligned_cols=376 Identities=15% Similarity=0.142 Sum_probs=215.8
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
+++++|++++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.++... ..
T Consensus 52 ~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~lp-----~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISEL----RMPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRLQNIS-----CC 118 (562)
T ss_dssp TTCCEEECCSSCCCCC----CGGGTTTCTTCCEEECCSCCCCEECT----TTTTTCTTCCEEECTTSCCCEEC-----SC
T ss_pred CCcCEEECCCCCcccc----ChhhhccCCCccEEECCCCCCCcCCH----HHhCCCCCCCEEECCCCcCCccC-----cc
Confidence 6788999999888653 22456677889999999998875422 33456788999999999887432 22
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCc--ceeecCCCCC--Chh
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L--~~L~L~~~~~--~~~ 317 (588)
.+++|++|++++|.++... ++..+.++++|++|++++|.+...+ +..+++| ++|++++|.+ +..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC---CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCccccC---chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeeccccccccc
Confidence 5688999999999887632 1123456688999999998887532 2334444 8888888876 322
Q ss_pred HHHHHHH----------------------HhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhh
Q 007838 318 GANALAK----------------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (588)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 375 (588)
....+.. .+..+++|+.|++++|...-..+......+. ..++|+.|++.++.+++..
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~-~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT-RGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH-SCSSCEEEEEEEEEECHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh-ccCcceEEEecCCcCcHHH
Confidence 1111000 0113456677777776543333333333333 5567888888888777776
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCCChHH---H-------------------------HHHHHHHhhCCCccEEEeeCCcC
Q 007838 376 AFHVAEYIKNCKSLLWINLYMNDIGDEG---A-------------------------EKIADALKQNRTITTIDLGGNNI 427 (588)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~---~-------------------------~~l~~~l~~~~~L~~L~Ls~n~i 427 (588)
...+...+. .++|++|++++|.+++.. . ..+...+ ...+|++|++++|.+
T Consensus 266 ~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~-~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 266 SVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH-HTCCCSEEEEESSCC
T ss_pred HHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh-ccCcceEEEccCCCc
Confidence 665655443 347888888777655210 0 1111111 123444444444444
Q ss_pred CHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEee
Q 007838 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (588)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 507 (588)
.... ....+++|++|++++|.+++..+ ..+..+++|++|++++|+++.... +...+..+++|++|+++
T Consensus 344 ~~~~------~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 344 IHMV------CPPSPSSFTFLNFTQNVFTDSVF----QGCSTLKRLQTLILQRNGLKNFFK--VALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCCC------CCSSCCCCCEEECCSSCCCTTTT----TTCCSCSSCCEEECCSSCCCBTTH--HHHTTTTCTTCCEEECT
T ss_pred cccc------CccCCCCceEEECCCCccccchh----hhhcccCCCCEEECCCCCcCCccc--chhhhcCCCCCCEEECC
Confidence 3211 00334666666666666655321 223445666666666666665321 11223334666666666
Q ss_pred cCCCCcccccC----CCCchhh--------hhhHhhh-hcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 508 ANGLRDEVCSG----CNGLSFF--------HSAIYSL-KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 508 ~n~l~~~~~~~----~~~l~~~--------~~~~~~l-~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
+|++.+.++.. +++|+.+ ...+..+ ++|+.|+|++|+|+. ++..+..+ ++|+.|||++|+|+.
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~---ip~~~~~l-~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---IPKDVTHL-QALQELNVASNQLKS 487 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC---CCTTTTSS-CCCSEEECCSSCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc---cChhhcCC-CCCCEEECCCCCCCC
Confidence 66666533221 1111110 0111222 688888888888875 33333334 788889998888886
Q ss_pred Ccccccc
Q 007838 575 SNIIFFP 581 (588)
Q Consensus 575 ~~~~~l~ 581 (588)
.....+.
T Consensus 488 l~~~~~~ 494 (562)
T 3a79_B 488 VPDGVFD 494 (562)
T ss_dssp CCTTSTT
T ss_pred CCHHHHh
Confidence 5544333
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.4e-29 Score=273.14 Aligned_cols=188 Identities=18% Similarity=0.188 Sum_probs=109.6
Q ss_pred CCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHH
Q 007838 357 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 436 (588)
Q Consensus 357 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 436 (588)
.+++|++|++++|.++..+. .+..+..+++|++|++++|.+... ...+..+++|++|++++|.++.... .
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~---~ 414 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE---F 414 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESCTT---S
T ss_pred cCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccccc---h
Confidence 34556666666666554210 123345566666666666655542 1114445666666666665543210 1
Q ss_pred HHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCCh-hHHHHHHHHHhcCCcccEEEeecCCCCccc
Q 007838 437 RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA-SGAEFVADMLRYNNTISILDLRANGLRDEV 515 (588)
Q Consensus 437 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 515 (588)
..+..+++|+.|++++|.+.... ...+..+++|++|++++|.+++ ..+ ..+..+++|++|++++|++.+.
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~p----~~~~~l~~L~~L~l~~n~l~~~- 485 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQL- 485 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEEECTTSCCCEE-
T ss_pred hhhhcCCCCCEEeCcCCcccccc----hhhhhcCCcCcEEECcCCcCccccch----hhhhcccCCCEEECCCCccccC-
Confidence 12344566777777776655432 1223445667777777776652 111 1233446777777777777655
Q ss_pred ccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccC
Q 007838 516 CSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVS 575 (588)
Q Consensus 516 ~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~ 575 (588)
.|..+..+++|++|+|++|++++. .+..+..+ ++|+.|++++|+++..
T Consensus 486 ---------~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l-~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 486 ---------SPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRL-TSLQKIWLHTNPWDCS 533 (570)
T ss_dssp ---------CTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTC-TTCCEEECCSSCBCCC
T ss_pred ---------ChhhhhcccCCCEEeCCCCcCCCC--CHHHhhcc-cCCcEEEecCCcccCC
Confidence 566778888888888888888775 23334444 7788888888887653
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.9e-28 Score=259.98 Aligned_cols=322 Identities=18% Similarity=0.141 Sum_probs=216.4
Q ss_pred cEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhh
Q 007838 165 SSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244 (588)
Q Consensus 165 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 244 (588)
+.++.+++.++. ++..+ .++++.|+|++|.++.... ..+..+++|++|+|++|.+.... +..+..
T Consensus 14 ~~v~c~~~~l~~-----ip~~~--~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVA-----VPEGI--PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVE----PGAFNN 78 (477)
T ss_dssp TEEECCSCCCSS-----CCSCC--CTTCSEEECCSSCCCEECT----TTTTTCTTCCEEECTTSCCCEEC----TTTTTT
T ss_pred CEEEeCCCCcCc-----CCCCC--CCCCcEEECCCCccceECH----hHccCCCCCCEEECCCCccCEeC----hhhhhC
Confidence 345555555543 22222 2567777777777764322 23455677778888777776542 344556
Q ss_pred CCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHH
Q 007838 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (588)
Q Consensus 245 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~ 324 (588)
+++|++|+|++|.++..... .+..+++|++|+|++|.+... .+..+..+++|++|++++|.++.... .
T Consensus 79 l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~ 146 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISH----R 146 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEECT----T
T ss_pred CccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccC----ChhHccccccCCEEECCCCccceeCh----h
Confidence 67788888887777654221 234457788888888877532 23345567788888888887765432 2
Q ss_pred HhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHH
Q 007838 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (588)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 404 (588)
.+..+++|++|++++|.+.......+ ..+++|+.|++++|.+... ....+..+++|++|++++|...+.
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~-- 215 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWPYLDT-- 215 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCE--
T ss_pred hccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCccccc--
Confidence 35577888888888888776443333 4667888888888887764 223456778888888888765443
Q ss_pred HHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCC
Q 007838 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (588)
Q Consensus 405 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (588)
+........+|++|++++|.++.... ..+..+++|+.|+|++|.++.... ..+..+++|++|+|++|+++
T Consensus 216 --~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 216 --MTPNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp --ECTTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCS
T ss_pred --cCcccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccc
Confidence 22222334588999999988875432 345566889999999998876533 23355688999999999888
Q ss_pred hhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 485 ASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
...+..+.. +++|++|+|++|++++. .+..|..+++|+.|+|++|.+...
T Consensus 286 ~~~~~~~~~----l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 286 VVEPYAFRG----LNYLRVLNVSGNQLTTL----------EESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp EECTTTBTT----CTTCCEEECCSSCCSCC----------CGGGBSCGGGCCEEECCSSCEECS
T ss_pred eECHHHhcC----cccCCEEECCCCcCcee----------CHhHcCCCcccCEEEccCCCccCc
Confidence 776554443 48999999999998876 445678889999999999988753
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.9e-28 Score=257.57 Aligned_cols=321 Identities=16% Similarity=0.095 Sum_probs=247.1
Q ss_pred cEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhh
Q 007838 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN 272 (588)
Q Consensus 193 ~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~ 272 (588)
+.++.++++++... .. -.++++.|++++|.++... ...+..+++|++|+|++|.++.... ..+..
T Consensus 14 ~~v~c~~~~l~~ip-----~~--~~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAVP-----EG--IPTETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVSAVEP----GAFNN 78 (477)
T ss_dssp TEEECCSCCCSSCC-----SC--CCTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCCEECT----TTTTT
T ss_pred CEEEeCCCCcCcCC-----CC--CCCCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccCEeCh----hhhhC
Confidence 46777777765321 11 1257999999999998753 3456678999999999999987533 33456
Q ss_pred CCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHH
Q 007838 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS 352 (588)
Q Consensus 273 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 352 (588)
+++|++|+|++|.++... ...+.++++|++|++++|.++.... ..+..+++|++|++++|.+.......+
T Consensus 79 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 148 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIP----LGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDLVYISHRAF-- 148 (477)
T ss_dssp CTTCCEEECCSSCCCSCC----TTSSTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEEECCTTCCEECTTSS--
T ss_pred CccCCEEECCCCcCCccC----cccccCCCCCCEEECCCCccccCCh----hHccccccCCEEECCCCccceeChhhc--
Confidence 789999999999986422 2335678999999999999876532 346789999999999999876543333
Q ss_pred HHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHH
Q 007838 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432 (588)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 432 (588)
..+++|++|++++|.++.. ....+..+++|+.|++++|.+... ....+..+++|++|++++|...+.
T Consensus 149 ---~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~-- 215 (477)
T 2id5_A 149 ---SGLNSLEQLTLEKCNLTSI----PTEALSHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWPYLDT-- 215 (477)
T ss_dssp ---TTCTTCCEEEEESCCCSSC----CHHHHTTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCE--
T ss_pred ---cCCCCCCEEECCCCcCccc----ChhHhcccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCccccc--
Confidence 4678999999999999875 345678999999999999998874 223466789999999999875543
Q ss_pred HHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCC
Q 007838 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (588)
Q Consensus 433 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 512 (588)
+........+|+.|++++|.++..... .+..+++|++|+|++|.++......+. .+++|++|+|++|++.
T Consensus 216 --~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 216 --MTPNCLYGLNLTSLSITHCNLTAVPYL----AVRHLVYLRFLNLSYNPISTIEGSMLH----ELLRLQEIQLVGGQLA 285 (477)
T ss_dssp --ECTTTTTTCCCSEEEEESSCCCSCCHH----HHTTCTTCCEEECCSSCCCEECTTSCT----TCTTCCEEECCSSCCS
T ss_pred --cCcccccCccccEEECcCCcccccCHH----HhcCccccCeeECCCCcCCccChhhcc----ccccCCEEECCCCccc
Confidence 222223346899999999999865433 346679999999999999887655444 4499999999999999
Q ss_pred cccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 513 DEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 513 ~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
+. .+..+.++++|+.|+|++|++++. ....+..+ ++|+.|+|++|++..
T Consensus 286 ~~----------~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l-~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 286 VV----------EPYAFRGLNYLRVLNVSGNQLTTL--EESVFHSV-GNLETLILDSNPLAC 334 (477)
T ss_dssp EE----------CTTTBTTCTTCCEEECCSSCCSCC--CGGGBSCG-GGCCEEECCSSCEEC
T ss_pred eE----------CHHHhcCcccCCEEECCCCcCcee--CHhHcCCC-cccCEEEccCCCccC
Confidence 87 677889999999999999999875 22344444 789999999999863
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=2e-28 Score=277.26 Aligned_cols=369 Identities=16% Similarity=0.103 Sum_probs=207.6
Q ss_pred HHcCCccEEEccCCCCCHHHHHHH-HHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 159 KELRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l-~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
..+++|+.|+|++|.+... + +..+..+++|++|+|++|.++... ...+..+++|++|+|++|.+.+....
T Consensus 45 ~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~n~l~~~~~~- 115 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFLH----PDAFQGLFHLFELRLYFCGLSDAVLK- 115 (844)
T ss_dssp SSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEEC----TTSSCSCSSCCCEECTTCCCSSCCST-
T ss_pred cccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCcccC----HhHccCCcccCEeeCcCCCCCccccc-
Confidence 4566677777777633211 1 234556677777777777765432 23345566777777777766542100
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChh
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 317 (588)
...+..+++|++|+|++|.++.... ...+.++++|++|++++|.+.......+.. +. .++|+.|++++|.+...
T Consensus 116 -~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~-~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 116 -DGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQ-GKTLSFFSLAANSLYSR 189 (844)
T ss_dssp -TCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HH-HCSSCCCEECCSBSCCC
T ss_pred -CccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECCCCcCCeeCHHHccc-cc-CCccceEECCCCccccc
Confidence 0124456777777777776654321 123445677777777777665322111111 00 15666666666654432
Q ss_pred HHHHHHHHhhcCC------CCCEEEccCCCCChhHHHHHHHHHh-------------------------------c--CC
Q 007838 318 GANALAKGLEGNK------SLRELHLHGNSIGDEGIRALMSGLS-------------------------------S--RK 358 (588)
Q Consensus 318 ~~~~l~~~l~~~~------~L~~L~Ls~n~l~~~~~~~l~~~l~-------------------------------~--~~ 358 (588)
.. ..+..++ .|++|++++|.+++.....+...+. . ..
T Consensus 190 ~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 190 VS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp CC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cc----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 11 1112222 3778888877665433222221110 0 12
Q ss_pred CCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHH
Q 007838 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (588)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (588)
++|+.|++++|.+... .+..+..+++|+.|+|++|.++.. ....+..+++|++|+|++|.++.. ....
T Consensus 266 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGEL----YSSN 333 (844)
T ss_dssp SCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCC----CSCS
T ss_pred CCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCcc----CHHH
Confidence 4688888888877664 334456777888888888887764 234456677888888888877643 2234
Q ss_pred HhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccC
Q 007838 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSG 518 (588)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 518 (588)
+..+++|+.|++++|.++..... .+..+++|++|++++|.++.... .++|++|++++|++... +..
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~---------~~~L~~L~l~~N~l~~l-~~~ 399 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQ----TFKFLEKLQTLDLRDNALTTIHF---------IPSIPDIFLSGNKLVTL-PKI 399 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSS----CSCSCCCCCEEEEETCCSCCCSS---------CCSCSEEEEESCCCCCC-CCC
T ss_pred hcCCCCCCEEECCCCCCCccChh----hhcCCCCCCEEECCCCCCCcccC---------CCCcchhccCCCCcccc-ccc
Confidence 55567888888888877654221 23456788888888887765321 36777777777777633 221
Q ss_pred ----------CCCchhh--hhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 519 ----------CNGLSFF--HSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 519 ----------~~~l~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
-+.+..+ +..+..+++|+.|+|++|++++.... ..+... ++|+.|+|++|.|+.
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~-~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-QTPSEN-PSLEQLFLGENMLQL 465 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-SSSCSC-TTCCBCEEESCCCSS
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc-cccccC-CccccccCCCCcccc
Confidence 1222222 23355777788888888877642111 011111 556666666666653
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-27 Score=245.93 Aligned_cols=312 Identities=15% Similarity=0.100 Sum_probs=224.0
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
.+++++.|+++++.++.... ..+..+++|++|++++|.++..... .+..+++|++|++++|.++... +
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLP----P 110 (390)
T ss_dssp GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCC----T
T ss_pred ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCC----H
Confidence 46889999999988765321 2245568899999999988754322 3456788999999999887642 3
Q ss_pred HHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHH
Q 007838 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (588)
Q Consensus 240 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~ 319 (588)
..+..+++|++|++++|.++.... ..+..+++|++|++++|.+.... +..+..+++|++|++++|.++..+
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~- 181 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD- 181 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCC----TTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred HHhcCCCCCCEEECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccC----hhhccCCCCCCEEECCCCcCCccc-
Confidence 445667889999999998875422 22345688999999998876422 334566788999999988877643
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCC
Q 007838 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (588)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 399 (588)
+..+++|++|++++|.+... ...++|+.|++++|.+... +. ...++|++|++++|.+
T Consensus 182 ------~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 182 ------LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNL 238 (390)
T ss_dssp ------GGGCTTCSEEECCSSCCSEE----------ECCSSCSEEECCSSCCCEE-----EC--CCCSSCCEEECCSSCC
T ss_pred ------cccccccceeeccccccccc----------CCCCcceEEECCCCeeeec-----cc--cccccccEEECCCCCC
Confidence 45678888999988887653 2345788899988888763 11 3356888888888888
Q ss_pred ChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcc
Q 007838 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (588)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (588)
++. ..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.++... .....+++|++|+++
T Consensus 239 ~~~------~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 239 TDT------AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECC
T ss_pred ccc------HHHcCCCCccEEECCCCcCCCc----ChhHccccccCCEEECCCCcCcccC-----cccCCCCCCCEEECC
Confidence 764 3466778888888888888754 2344566688888888888877532 122345788888888
Q ss_pred cCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
+|+++.... .+..+ ++|++|++++|++.+. + +..+++|+.|++++|.+++.
T Consensus 304 ~n~l~~~~~-~~~~l----~~L~~L~L~~N~i~~~-----------~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 304 HNHLLHVER-NQPQF----DRLENLYLDHNSIVTL-----------K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCCCCGG-GHHHH----TTCSEEECCSSCCCCC-----------C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCcceecCc-ccccc----CcCCEEECCCCcccee-----------C--chhhccCCEEEcCCCCccch
Confidence 888876532 34444 8888888888888755 1 56678888888888888764
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=9.2e-27 Score=240.35 Aligned_cols=314 Identities=17% Similarity=0.161 Sum_probs=248.2
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHH
Q 007838 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (588)
Q Consensus 189 ~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~ 268 (588)
..+++.|++++|.++..... .+..+++|++|++++|.+.+.. ...+..+++|++|++++|.++.... .
T Consensus 44 l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLPP----H 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCCT----T
T ss_pred cCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccC----hhhccCCCCcCEEECCCCCCCcCCH----H
Confidence 47999999999988754332 3466788999999999988652 2355678999999999999987533 3
Q ss_pred HHhhCCCccEEEeeccCCChhhHHHHHHH-HhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHH
Q 007838 269 LLKNNSILRVLELNNNMIDYSGFTSLAEA-LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (588)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (588)
.+..+++|++|++++|.+.. ++.. +..+++|++|++++|.++.... ..+..+++|++|++++|.+...++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~ 182 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL 182 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCG
T ss_pred HhcCCCCCCEEECCCCccCc-----CCHHHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCcccc
Confidence 34566899999999999863 2333 4678999999999998876432 346788999999999999987532
Q ss_pred HHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcC
Q 007838 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (588)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (588)
..+++|+.|++++|.++.. ...++|++|++++|.++... . ...++|++|++++|.+
T Consensus 183 --------~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~~-----~--~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 183 --------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNL 238 (390)
T ss_dssp --------GGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEEE-----C--CCCSSCCEEECCSSCC
T ss_pred --------ccccccceeeccccccccc---------CCCCcceEEECCCCeeeecc-----c--cccccccEEECCCCCC
Confidence 3457899999999998873 45578999999999988741 1 2247999999999999
Q ss_pred CHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEee
Q 007838 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (588)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 507 (588)
++. ..+..+++|++|++++|.+++... ..+..+++|++|++++|+++..... +..+++|++|+|+
T Consensus 239 ~~~------~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 239 TDT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNLY-----GQPIPTLKVLDLS 303 (390)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCSSCCCEEECS-----SSCCTTCCEEECC
T ss_pred ccc------HHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCCCcCcccCcc-----cCCCCCCCEEECC
Confidence 864 356778999999999999987533 3345678999999999999875321 2345899999999
Q ss_pred cCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCcccc
Q 007838 508 ANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIF 579 (588)
Q Consensus 508 ~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~ 579 (588)
+|++.+. |..+..+++|++|+|++|.++... +... ++|+.|+|++|+++......
T Consensus 304 ~n~l~~~-----------~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~-~~L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 304 HNHLLHV-----------ERNQPQFDRLENLYLDHNSIVTLK-----LSTH-HTLKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp SSCCCCC-----------GGGHHHHTTCSEEECCSSCCCCCC-----CCTT-CCCSEEECCSSCEEHHHHHH
T ss_pred CCcceec-----------CccccccCcCCEEECCCCccceeC-----chhh-ccCCEEEcCCCCccchhHHH
Confidence 9999855 777899999999999999998752 3334 88999999999998766543
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.1e-26 Score=246.60 Aligned_cols=312 Identities=15% Similarity=0.101 Sum_probs=229.8
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
.+.+++.++++++.++... ...+..+++|++|+|++|.++.... ..+..+++|++|+|++|.++... +
T Consensus 49 ~l~~l~~l~l~~~~l~~lp----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----P 116 (597)
T ss_dssp GGCCCSEEEESSCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----T
T ss_pred cCCCceEEEeeCCCCCCcC----HHHHccCCCCcEEECCCCCCCCCCh----HHhcCCCCCCEEECCCCcCCCCC----H
Confidence 3578899999998776532 2234557899999999998875432 23467788999999999887652 3
Q ss_pred HHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHH
Q 007838 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (588)
Q Consensus 240 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~ 319 (588)
..+..+++|++|+|++|.++.... ..+..+++|++|+|++|.+... .+..+..+++|++|++++|.++..+
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC-
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC-
Confidence 445667899999999998875422 2235668899999999988632 2345667889999999999887643
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCC
Q 007838 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (588)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 399 (588)
+..+++|++|++++|.+... ...+.|+.|++++|.++... . ...++|+.|+|++|.+
T Consensus 188 ------~~~l~~L~~L~l~~n~l~~l----------~~~~~L~~L~ls~n~l~~~~-----~--~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 188 ------LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNL 244 (597)
T ss_dssp ------GGGCTTCSEEECCSSCCSEE----------ECCTTCSEEECCSSCCCEEE-----C--SCCSCCCEEECCSSCC
T ss_pred ------hhhhhhhhhhhcccCccccc----------cCCchhheeeccCCcccccc-----c--ccCCCCCEEECCCCCC
Confidence 45678899999999988652 24457999999999887631 1 2246899999999988
Q ss_pred ChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcc
Q 007838 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (588)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (588)
++. ..+..+++|++|+|++|.+++. .+..+..+++|+.|+|++|.++.. ......+++|++|+|+
T Consensus 245 ~~~------~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 245 TDT------AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECC
T ss_pred CCC------hhhccCCCCCEEECCCCccCCC----CHHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECC
Confidence 873 3467788999999999988765 334556678899999999988763 1222346789999999
Q ss_pred cCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
+|.++... ..+..+ ++|+.|+|++|.+.+. + +..+++|+.|+|++|.+.+.
T Consensus 310 ~N~l~~i~-~~~~~l----~~L~~L~L~~N~l~~~-----------~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 310 HNHLLHVE-RNQPQF----DRLENLYLDHNSIVTL-----------K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCCCCG-GGHHHH----TTCSEEECCSSCCCCC-----------C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCccC-cccccC----CCCCEEECCCCCCCCc-----------C--hhhcCCCCEEEeeCCCCCCh
Confidence 99888543 334455 8899999999988765 1 56678888999999988874
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.3e-25 Score=235.71 Aligned_cols=315 Identities=16% Similarity=0.137 Sum_probs=229.3
Q ss_pred HHHcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007838 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (588)
Q Consensus 158 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (588)
+..+++|++|++++|.++.. . +..+++|++|++++|.++... +..+++|++|++++|.++...
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l~--- 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-----D--LSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKLD--- 122 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCCC---
T ss_pred hcccCCCCEEEccCCcCCeE-----c--cccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCeec---
Confidence 45789999999999999873 1 677899999999999998642 567889999999999998641
Q ss_pred HHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccC-CChhhHHHHHHHHhhCCCcceeecCCCCCCh
Q 007838 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (588)
Q Consensus 238 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 316 (588)
+..+++|++|++++|.++... +..+++|++|++++|. +... .+..+++|++|++++|.++.
T Consensus 123 ----~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 123 ----VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ----CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCC
T ss_pred ----CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCccce
Confidence 567899999999999998742 4567899999999994 4321 25568999999999999886
Q ss_pred hHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccC
Q 007838 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (588)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 396 (588)
.. +..+++|++|++++|.+++.. + ..+++|+.|++++|.+++ ++ +..+++|++|++++
T Consensus 185 l~-------l~~l~~L~~L~l~~N~l~~~~---l-----~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 185 LD-------VSQNKLLNRLNCDTNNITKLD---L-----NQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CC-------CTTCTTCCEEECCSSCCSCCC---C-----TTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCS
T ss_pred ec-------cccCCCCCEEECcCCcCCeec---c-----ccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeC
Confidence 43 668899999999999998752 2 467899999999999998 33 67899999999999
Q ss_pred CCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHH------HHHHHHHhcCCCcCEEECcCCCCChHHH------HHHH
Q 007838 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA------SAIARVLKDNSVITSLDLAYNPIGADGA------KALS 464 (588)
Q Consensus 397 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~------~~l~ 464 (588)
|.++... +..+++|+.|++++|++..... ..++ ...+++|+.|++++|....... ..+
T Consensus 243 N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L- 312 (457)
T 3bz5_A 243 NPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL- 312 (457)
T ss_dssp SCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred CcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-
Confidence 9998742 2345666655555544332100 0011 2456889999999985322110 001
Q ss_pred HHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhcc
Q 007838 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (588)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~ 544 (588)
.+..+++|++|++++|+++... +..+++|+.|++++|++.+. +.|..|++++|.
T Consensus 313 -~l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N~l~~l------------------~~L~~L~l~~n~ 366 (457)
T 3bz5_A 313 -DLSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNAHIQDF------------------SSVGKIPALNNN 366 (457)
T ss_dssp -CCTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSSCCCBC------------------TTGGGSSGGGTS
T ss_pred -chhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCCCCCCc------------------cccccccccCCc
Confidence 1345678999999999988752 45568999999999998864 344555555665
Q ss_pred chhHHHHHHHHHhhhhccceeeccCCccc
Q 007838 545 LQGAKCLAQSFKVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 545 l~~~~~l~~~~~~~~~~L~~L~ls~N~i~ 573 (588)
++|. ..+ ..|..+|+++|+++
T Consensus 367 l~g~-------~~~-~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 367 FEAE-------GQT-ITMPKETLTNNSLT 387 (457)
T ss_dssp EEEE-------EEE-EECCCBCCBTTBEE
T ss_pred EEec-------cee-eecCccccccCcEE
Confidence 5553 011 44666666666655
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.8e-25 Score=243.46 Aligned_cols=312 Identities=17% Similarity=0.169 Sum_probs=246.7
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHH
Q 007838 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (588)
Q Consensus 189 ~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~ 268 (588)
..+++.+++++|.++.... ..+..+++|++|++++|.+.... ...+..+++|++|+|++|.++.... .
T Consensus 50 l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLPP----H 117 (597)
T ss_dssp GCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCCT----T
T ss_pred CCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCC----hHHhcCCCCCCEEECCCCcCCCCCH----H
Confidence 4789999999998765433 23456788999999999998652 3356678999999999999987533 2
Q ss_pred HHhhCCCccEEEeeccCCChhhHHHHHH-HHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHH
Q 007838 269 LLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (588)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (588)
.+..+++|++|+|++|.++. ++. .+..+++|++|++++|.++.... ..+..+++|++|++++|.+....+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~ 188 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL 188 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECTTSCCSBCCG
T ss_pred HHcCCCCCCEEEeeCCCCCC-----CCHHHhccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECcCCCCCCcCh
Confidence 34566899999999999863 233 34678999999999998876442 346789999999999999987532
Q ss_pred HHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcC
Q 007838 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (588)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (588)
..+++|+.|++++|.++.. ...++|++|++++|.++... . ...++|+.|+|++|.+
T Consensus 189 --------~~l~~L~~L~l~~n~l~~l---------~~~~~L~~L~ls~n~l~~~~-----~--~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 189 --------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNL 244 (597)
T ss_dssp --------GGCTTCSEEECCSSCCSEE---------ECCTTCSEEECCSSCCCEEE-----C--SCCSCCCEEECCSSCC
T ss_pred --------hhhhhhhhhhcccCccccc---------cCCchhheeeccCCcccccc-----c--ccCCCCCEEECCCCCC
Confidence 3467899999999998873 45678999999999987641 1 1236899999999999
Q ss_pred CHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEee
Q 007838 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (588)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 507 (588)
++. ..+..+++|+.|+|++|.++...+ ..+..+++|++|+|++|.++.... .+..+++|++|+|+
T Consensus 245 ~~~------~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 245 TDT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLS 309 (597)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECC
T ss_pred CCC------hhhccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECC
Confidence 863 456778999999999999987633 334567999999999999987532 12345899999999
Q ss_pred cCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCcc
Q 007838 508 ANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNI 577 (588)
Q Consensus 508 ~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~ 577 (588)
+|.+.+. |..+..+++|+.|+|++|.+++.. +..+ ++|+.|+|++|+++....
T Consensus 310 ~N~l~~i-----------~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~-~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 310 HNHLLHV-----------ERNQPQFDRLENLYLDHNSIVTLK-----LSTH-HTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SSCCCCC-----------GGGHHHHTTCSEEECCSSCCCCCC-----CCTT-CCCSEEECCSSCEEHHHH
T ss_pred CCCCCcc-----------CcccccCCCCCEEECCCCCCCCcC-----hhhc-CCCCEEEeeCCCCCChhH
Confidence 9999955 788899999999999999998752 3334 789999999999976543
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=8.2e-26 Score=248.44 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=61.7
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007838 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (588)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 242 (588)
++++|||++|.|+.. -...+..+++|++|+|++|.|+.... ..+..+++|++|+|++|+++... ...+
T Consensus 53 ~~~~LdLs~N~i~~l----~~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~~L~~L~Ls~N~l~~l~----~~~f 120 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLA----LGAF 120 (635)
T ss_dssp TCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEEC----GGGG
T ss_pred CCCEEEeeCCCCCCC----CHHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCCCCCEEEccCCcCCCCC----HHHh
Confidence 455555555555432 11234445555555555555543211 12344455555555555554321 1223
Q ss_pred hhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCC
Q 007838 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (588)
Q Consensus 243 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 315 (588)
..+++|++|+|++|+++..... .+.++++|++|++++|.+... .++..+..+++|++|++++|.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~----~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCCEEECCCCcCCCCChh----hhhcCcccCeeccccCccccC---CCchhhccchhhhhhcccCcccc
Confidence 4445555555555555442111 123345555555555554321 11233344555555555555443
No 48
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.89 E-value=9.9e-22 Score=199.88 Aligned_cols=209 Identities=22% Similarity=0.299 Sum_probs=119.5
Q ss_pred CccEEEeeccCCChhhHHHHHHHHhhC-CCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHH
Q 007838 275 ILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (588)
Q Consensus 275 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (588)
.|+.|+|++|.+++.+...+...+... ++|++|+|++|.+++.+...+...+. +|++|+|++|.+++.++..++..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHHH
Confidence 344444444444444444444443322 34555555555554444443333322 45666666666666666666666
Q ss_pred HhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHH
Q 007838 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (588)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (588)
+....++|++|+|++|.+++.++..++..+..+++|++|+|++|.+++.|+..++.++..+++|++|+|++|.|++.++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 65455566666666666666666666666666666777777777776666666666666666677777777777766666
Q ss_pred HHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhC-CCccEEE--cccCCCChh
Q 007838 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLK--LGWCQIGAS 486 (588)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~--L~~n~i~~~ 486 (588)
.++..+..+++|++|+|++|.|++.+...+....... ..|+.+. +..+.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 6666666666677777777777666666665543222 1255555 555555444
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=7.5e-25 Score=220.62 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=59.4
Q ss_pred CccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHH
Q 007838 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (588)
Q Consensus 191 ~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l 270 (588)
+++.++++++.++... .. -.++|+.|++++|.++... ...+..+++|++|++++|.++.... ..+
T Consensus 32 ~l~~l~~~~~~l~~lp-----~~--~~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-----KD--LPPDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKISP----GAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCC-----CS--CCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBCT----TTT
T ss_pred CCeEEEecCCCccccC-----cc--CCCCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCeeCH----HHh
Confidence 5666666666654211 00 1145666666666665432 1233445666666666665554322 122
Q ss_pred hhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007838 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (588)
Q Consensus 271 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 343 (588)
..+++|++|++++|.++. ++..+ .++|++|++++|.++.... ..+..+++|++|++++|.+.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKE-----LPEKM--PKTLQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp TTCTTCCEEECCSSCCSB-----CCSSC--CTTCCEEECCSSCCCBBCH----HHHTTCTTCCEEECCSSCCC
T ss_pred cCCCCCCEEECCCCcCCc-----cChhh--cccccEEECCCCcccccCH----hHhcCCccccEEECCCCcCC
Confidence 334556666666555532 11111 1345555555554443322 12334445555555555443
No 50
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9.1e-22 Score=198.56 Aligned_cols=181 Identities=18% Similarity=0.262 Sum_probs=77.8
Q ss_pred CCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHh
Q 007838 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (588)
Q Consensus 247 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l 326 (588)
.++.++++++.+.+. .+..... +.++.|++++|.+.... ..+..+++|++|++++|.++..+ ++..+
T Consensus 48 ~~~~l~l~~~~~~~~---~~~~~~~--~~l~~L~l~~n~l~~~~-----~~~~~~~~L~~L~L~~~~l~~~~---~~~~~ 114 (336)
T 2ast_B 48 LWQTLDLTGKNLHPD---VTGRLLS--QGVIAFRCPRSFMDQPL-----AEHFSPFRVQHMDLSNSVIEVST---LHGIL 114 (336)
T ss_dssp TSSEEECTTCBCCHH---HHHHHHH--TTCSEEECTTCEECSCC-----CSCCCCBCCCEEECTTCEECHHH---HHHHH
T ss_pred hheeeccccccCCHH---HHHhhhh--ccceEEEcCCccccccc-----hhhccCCCCCEEEccCCCcCHHH---HHHHH
Confidence 356666666655532 1222211 44666666655543211 11223445555555555443221 22333
Q ss_pred hcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEccCC-CCChHHH
Q 007838 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGA 404 (588)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~ 404 (588)
..+++|++|++++|.+++.....+ ..+++|++|++++| .+++.+ ++..+..+++|++|++++| .+++.++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l-----~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHH-----TTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred hhCCCCCEEeCcCcccCHHHHHHH-----hcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 444555555555555444433333 13444555555554 344432 2223344445555555555 4444322
Q ss_pred HHHHHHHhhCC-CccEEEeeCC--cCCHHHHHHHHHHHhcCCCcCEEECcCCC
Q 007838 405 EKIADALKQNR-TITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYNP 454 (588)
Q Consensus 405 ~~l~~~l~~~~-~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 454 (588)
...+..++ +|++|++++| .+++.+ +...+..+++|+.|++++|.
T Consensus 187 ---~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 187 ---QVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp ---HHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCT
T ss_pred ---HHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCC
Confidence 12223334 4555555554 334332 22223334444444444444
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=6.1e-25 Score=221.30 Aligned_cols=222 Identities=20% Similarity=0.203 Sum_probs=118.6
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007838 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (588)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 242 (588)
+++.++++++.++. ++..+ .++++.|++++|.++.... ..+..+++|++|++++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~-----lp~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-----VPKDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCS-----CCCSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCccc-----cCccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 56777777766653 22211 2567777777777654322 12355667777777777766431 3344
Q ss_pred hhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHH
Q 007838 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (588)
Q Consensus 243 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l 322 (588)
..+++|++|++++|.++..... ..++|++|++++|.+.... +..+..+++|++|++++|.++..+. .
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~ 163 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--E 163 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--C
T ss_pred cCCCCCCEEECCCCcCCccChh-------hcccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--C
Confidence 5567777777777766642111 1146777777777765322 3344566777777777776653221 1
Q ss_pred HHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChH
Q 007838 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (588)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 402 (588)
...+..+++|++|++++|.+... ... ..++|++|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l-----~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTI-----PQG---LPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSC-----CSS---CCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCCCCcCEEECCCCccccC-----Ccc---ccccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence 13345566677777776665531 100 113555666665555543 122334455555555555555442
Q ss_pred HHHHHHHHHhhCCCccEEEeeCCcCC
Q 007838 403 GAEKIADALKQNRTITTIDLGGNNIH 428 (588)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (588)
....+..+++|++|+|++|.++
T Consensus 232 ----~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 232 ----DNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ----CTTTGGGSTTCCEEECCSSCCS
T ss_pred ----ChhhccCCCCCCEEECCCCcCc
Confidence 1112333444445555444444
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=9.3e-24 Score=214.72 Aligned_cols=286 Identities=15% Similarity=0.078 Sum_probs=146.3
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHH
Q 007838 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (588)
Q Consensus 189 ~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~ 268 (588)
|+.....+.+++.++... .. -.++|++|++++|.++... ...+..+++|++|++++|.++.... .
T Consensus 30 C~~~~~c~~~~~~l~~iP-----~~--~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~ 94 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-----SG--LTEAVKSLDLSNNRITYIS----NSDLQRCVNLQALVLTSNGINTIEE----D 94 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-----TT--CCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCEECT----T
T ss_pred CCCCeEeeCCCCCccccc-----cc--ccccCcEEECCCCcCcccC----HHHhccCCCCCEEECCCCccCccCH----h
Confidence 555556676666665321 11 1135777777777766432 1234455667777777776665322 1
Q ss_pred HHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCC-CCChhHH
Q 007838 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGI 347 (588)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 347 (588)
.+..+++|++|++++|+++... ...+..+++|++|++++|.++.... ...+..+++|++|++++| .+....
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~~l~~L~~L~l~~n~~~~~~~- 166 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLS----SSWFKPLSSLTFLNLLGNPYKTLGE---TSLFSHLTKLQILRVGNMDTFTKIQ- 166 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCC----HHHHTTCTTCSEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEEC-
T ss_pred hcCCCCCCCEEECCCCcCCcCC----HhHhCCCccCCEEECCCCCCcccCc---hhhhccCCCCcEEECCCCccccccC-
Confidence 2334456666666666654211 1224445566666666655542211 012334555555555555 233211
Q ss_pred HHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcC
Q 007838 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (588)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (588)
+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+
T Consensus 167 --------------------------------~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 167 --------------------------------RKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp --------------------------------TTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCS
T ss_pred --------------------------------HHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCcc
Confidence 11223344444444444444432 122333444555555555554
Q ss_pred CHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEee
Q 007838 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (588)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 507 (588)
+..... .+..+++|+.|++++|.++......+.. ......++.++++++.+++.....+...+..+++|++|+++
T Consensus 211 ~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 211 ILLLEI----FVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp TTHHHH----HHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred ccchhh----hhhhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 432211 1112355555555555444332222221 13345677777777777776666666666677777777777
Q ss_pred cCCCCcccccCCCCchhhhhh-HhhhhcccchhhhhccchhHH
Q 007838 508 ANGLRDEVCSGCNGLSFFHSA-IYSLKHMLFYSLCINYLQGAK 549 (588)
Q Consensus 508 ~n~l~~~~~~~~~~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~ 549 (588)
+|++... |.. +..+++|++|+|++|.+++..
T Consensus 286 ~N~l~~i-----------~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 286 RNQLKSV-----------PDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp SSCCCCC-----------CTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCcc-----------CHHHHhcCCCCCEEEeeCCCccCcC
Confidence 7777744 333 467777777777777776543
No 53
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.87 E-value=1.1e-20 Score=192.08 Aligned_cols=212 Identities=26% Similarity=0.325 Sum_probs=168.2
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcC-CCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 238 (588)
..++|+.|+|++|.+++.+...++..+... ++|++|+|++|.+++.++..+...+. +|++|+|++|.+++.+...+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHH
Confidence 357788999999999988888888888764 68999999999999888887776665 48899999999998888888
Q ss_pred HHHHh-hCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChh
Q 007838 239 CDILV-DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (588)
Q Consensus 239 ~~~l~-~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 317 (588)
+..+. .+++|++|+|++|.+++.++..++..+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.+++.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 88875 47889999999999888888888888888888999999998888888888888888888888888888888888
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEE--ccCCCCChh
Q 007838 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD--IGNNSISAK 374 (588)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~--Ls~n~l~~~ 374 (588)
+...+...+..+++|++|+|++|.|++.++..+..........|+.+. +..+.+++.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 888888888888888888888888888888877654332212377776 666666554
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=1.5e-22 Score=212.17 Aligned_cols=317 Identities=14% Similarity=0.163 Sum_probs=175.0
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
++|+.|++++|.++.. .. ..++|++|++++|.++.. . .+..+++|++|++++|.++.. +..
T Consensus 111 ~~L~~L~l~~n~l~~l-----~~---~~~~L~~L~L~~n~l~~l-----p-~~~~l~~L~~L~l~~N~l~~l-----p~~ 171 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL-----SD---LPPLLEYLGVSNNQLEKL-----P-ELQNSSFLKIIDVDNNSLKKL-----PDL 171 (454)
T ss_dssp TTCCEEECCSSCCSCC-----CS---CCTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSCC-----CCC
T ss_pred CCCcEEECCCCccCcc-----cC---CCCCCCEEECcCCCCCCC-----c-ccCCCCCCCEEECCCCcCccc-----CCC
Confidence 5677777777766541 11 125777777777777632 1 255667777777777776542 111
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHH
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~ 321 (588)
..+|++|++++|.++... .+..+++|++|++++|.+.. ++. ...+|++|++++|.++...
T Consensus 172 ---~~~L~~L~L~~n~l~~l~------~~~~l~~L~~L~l~~N~l~~-----l~~---~~~~L~~L~l~~n~l~~lp--- 231 (454)
T 1jl5_A 172 ---PPSLEFIAAGNNQLEELP------ELQNLPFLTAIYADNNSLKK-----LPD---LPLSLESIVAGNNILEELP--- 231 (454)
T ss_dssp ---CTTCCEEECCSSCCSSCC------CCTTCTTCCEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSSCC---
T ss_pred ---cccccEEECcCCcCCcCc------cccCCCCCCEEECCCCcCCc-----CCC---CcCcccEEECcCCcCCccc---
Confidence 246777777777776531 13556777788887777652 111 1347788888887765332
Q ss_pred HHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCCh
Q 007838 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (588)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 401 (588)
.+..+++|++|++++|.+... . ...++|+.|++++|.++. ++ ...++|++|++++|.+++
T Consensus 232 ---~~~~l~~L~~L~l~~N~l~~l-----~----~~~~~L~~L~l~~N~l~~-----l~---~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 232 ---ELQNLPFLTTIYADNNLLKTL-----P----DLPPSLEALNVRDNYLTD-----LP---ELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp ---CCTTCTTCCEEECCSSCCSSC-----C----SCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSE
T ss_pred ---ccCCCCCCCEEECCCCcCCcc-----c----ccccccCEEECCCCcccc-----cC---cccCcCCEEECcCCccCc
Confidence 155778888888888877641 1 123578888888887776 22 124678888888888776
Q ss_pred HHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcC-CCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEccc
Q 007838 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (588)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (588)
. .. -.++|++|++++|.++.. ... ++|+.|++++|.++... ..+++|++|++++
T Consensus 292 l-----~~---~~~~L~~L~l~~N~l~~i---------~~~~~~L~~L~Ls~N~l~~lp--------~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 292 L-----SE---LPPNLYYLNASSNEIRSL---------CDLPPSLEELNVSNNKLIELP--------ALPPRLERLIASF 346 (454)
T ss_dssp E-----SC---CCTTCCEEECCSSCCSEE---------CCCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCS
T ss_pred c-----cC---cCCcCCEEECcCCcCCcc---------cCCcCcCCEEECCCCcccccc--------ccCCcCCEEECCC
Confidence 2 10 125788888888887742 123 58999999999887521 1147899999999
Q ss_pred CCCChhHHHHHHHHHhcCCcccEEEeecCCCCc--ccccCCCCchh---hhhhHhhhhcccchhhhhccchhHHHHHHHH
Q 007838 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRD--EVCSGCNGLSF---FHSAIYSLKHMLFYSLCINYLQGAKCLAQSF 555 (588)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~ 555 (588)
|+++.... ..++|++|++++|++.+ .+|.++..+.. .-.....+++|+.|++++|.+++...++
T Consensus 347 N~l~~lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP--- 415 (454)
T 1jl5_A 347 NHLAEVPE--------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP--- 415 (454)
T ss_dssp SCCSCCCC--------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred Cccccccc--------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch---
Confidence 99886533 24889999999999988 55554433311 0011112488999999999998743233
Q ss_pred HhhhhccceeeccCCccccCcc
Q 007838 556 KVVNEALTSIDLAFNEIRVSNI 577 (588)
Q Consensus 556 ~~~~~~L~~L~ls~N~i~~~~~ 577 (588)
.+|+.|++.+|.+.+...
T Consensus 416 ----~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 416 ----ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp ----------------------
T ss_pred ----hhHhheeCcCcccCCccc
Confidence 568888898888766533
No 55
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.2e-20 Score=190.36 Aligned_cols=255 Identities=16% Similarity=0.202 Sum_probs=167.7
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHh
Q 007838 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 299 (588)
Q Consensus 220 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 299 (588)
++.++++++.+.+.. +...+ ..+++.|++++|.++..... +..+++|++|++++|.+++. .++..+.
T Consensus 49 ~~~l~l~~~~~~~~~---~~~~~--~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~---~~~~~~~ 115 (336)
T 2ast_B 49 WQTLDLTGKNLHPDV---TGRLL--SQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVS---TLHGILS 115 (336)
T ss_dssp SSEEECTTCBCCHHH---HHHHH--HTTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHH---HHHHHHT
T ss_pred heeeccccccCCHHH---HHhhh--hccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHH---HHHHHHh
Confidence 556666666555322 11111 14566666666655443211 22346677777777776642 2445556
Q ss_pred hCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCC-CCChhHHHHHHHHHhcCCCCceEEEccCC-CCChhhHH
Q 007838 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAF 377 (588)
Q Consensus 300 ~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~ 377 (588)
.+++|++|++++|.+++... ..+..+++|++|++++| .+++.++..+. ..+++|++|++++| .+++.+
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----~~~~~L~~L~l~~~~~l~~~~-- 185 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDELNLSWCFDFTEKH-- 185 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHH----HHHTTCTTCSEEECTTCBSCCHHHHHHHH----HHCTTCCEEECCCCTTCCHHH--
T ss_pred hCCCCCEEeCcCcccCHHHH----HHHhcCCCCCEEECCCCCCCCHHHHHHHH----hcCCCCCEEcCCCCCCcChHH--
Confidence 67788888888877765433 34556788888888888 67776655543 34567888888888 887754
Q ss_pred HHHHHHhcCC-CCcEEEccCC--CCChHHHHHHHHHHhhCCCccEEEeeCCc-CCHHHHHHHHHHHhcCCCcCEEECcCC
Q 007838 378 HVAEYIKNCK-SLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYN 453 (588)
Q Consensus 378 ~l~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (588)
+...+..++ +|++|++++| .+++.+ +...+..+++|++|++++|. +++.... .+..+++|+.|++++|
T Consensus 186 -~~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 186 -VQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp -HHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTC
T ss_pred -HHHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCC
Confidence 344567788 8888888888 677654 33445667888888888887 6765433 3455688999999888
Q ss_pred -CCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccc
Q 007838 454 -PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVC 516 (588)
Q Consensus 454 -~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 516 (588)
.+++.+... +..+++|++|++++| +++.+...+.. .+..|++++|++++..|
T Consensus 258 ~~~~~~~~~~----l~~~~~L~~L~l~~~-i~~~~~~~l~~------~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 258 YDIIPETLLE----LGEIPTLKTLQVFGI-VPDGTLQLLKE------ALPHLQINCSHFTTIAR 310 (336)
T ss_dssp TTCCGGGGGG----GGGCTTCCEEECTTS-SCTTCHHHHHH------HSTTSEESCCCSCCTTC
T ss_pred CCCCHHHHHH----HhcCCCCCEEeccCc-cCHHHHHHHHh------hCcceEEecccCccccC
Confidence 566654432 345788999999888 77776666653 25566688999988743
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.3e-25 Score=220.41 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=120.8
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHH
Q 007838 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (588)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 405 (588)
+..+++|++|++++|.+.+.....+ ..+++|++|++++|.++.. ++..+..+++|++|++++|.++..
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 164 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFL-----SQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA--- 164 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGG-----GGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE---
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHH-----hCCCCCCEEeCCCCccCCc----CChHHhcCCCCCeEECcCCcccCc---
Confidence 4455556666665555543211112 2345566666666655532 334455666666666666666533
Q ss_pred HHHHHHhhCC-CccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCC
Q 007838 406 KIADALKQNR-TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (588)
Q Consensus 406 ~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (588)
++..+..++ +|++|++++|.++.. ++..+..++ |+.|++++|.++... ...+..+++|++|++++|.++
T Consensus 165 -~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 165 -IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp -CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEECC----GGGCCTTSCCSEEECCSSEEC
T ss_pred -CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccCcC----CHHHhcCCCCCEEECCCCcee
Confidence 333444554 666677766666533 222333334 777777777655432 223344567777777777766
Q ss_pred hhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccce
Q 007838 485 ASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTS 564 (588)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~ 564 (588)
...+. +...++|++|+|++|++.+. +|..+..+++|++|+|++|+++|..+ .. ... ++|+.
T Consensus 235 ~~~~~-----~~~l~~L~~L~Ls~N~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~~~ip--~~-~~l-~~L~~ 295 (313)
T 1ogq_A 235 FDLGK-----VGLSKNLNGLDLRNNRIYGT----------LPQGLTQLKFLHSLNVSFNNLCGEIP--QG-GNL-QRFDV 295 (313)
T ss_dssp CBGGG-----CCCCTTCCEEECCSSCCEEC----------CCGGGGGCTTCCEEECCSSEEEEECC--CS-TTG-GGSCG
T ss_pred eecCc-----ccccCCCCEEECcCCcccCc----------CChHHhcCcCCCEEECcCCcccccCC--CC-ccc-cccCh
Confidence 44322 23347888888888888766 56777888888888888888876532 22 223 67888
Q ss_pred eeccCCc
Q 007838 565 IDLAFNE 571 (588)
Q Consensus 565 L~ls~N~ 571 (588)
|++++|+
T Consensus 296 l~l~~N~ 302 (313)
T 1ogq_A 296 SAYANNK 302 (313)
T ss_dssp GGTCSSS
T ss_pred HHhcCCC
Confidence 8888886
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=3.7e-23 Score=210.24 Aligned_cols=259 Identities=17% Similarity=0.171 Sum_probs=169.5
Q ss_pred HcCCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007838 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (588)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (588)
.|+.....+++++.++. ++..+ .++|++|++++|.++.... ..+..+++|++|++++|.++... .
T Consensus 29 ~C~~~~~c~~~~~~l~~-----iP~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~ 93 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS-----IPSGL--TEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIE----E 93 (353)
T ss_dssp EECTTSEEECCSTTCSS-----CCTTC--CTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEEC----T
T ss_pred CCCCCeEeeCCCCCccc-----ccccc--cccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccC----H
Confidence 34555567888887765 33322 3689999999999985432 23567889999999999998652 3
Q ss_pred HHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHH--HHhhCCCcceeecCCCC-CCh
Q 007838 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNY-GGA 316 (588)
Q Consensus 240 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~~~-~~~ 316 (588)
..+..+++|++|++++|.++.... ..+..+++|++|++++|++.. ++. .+..+++|++|++++|. ++.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCH----HHHTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred hhcCCCCCCCEEECCCCcCCcCCH----hHhCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCCccccc
Confidence 446678999999999999987543 335567999999999998863 232 45678999999999984 554
Q ss_pred hHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccC
Q 007838 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (588)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 396 (588)
... ..+..+++|++|++++|.+.+.....+ ..+++|++|++++|.++.. ....+..+++|++|++++
T Consensus 165 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 165 IQR----KDFAGLTFLEELEIDASDLQSYEPKSL-----KSIQNVSHLILHMKQHILL----LEIFVDVTSSVECLELRD 231 (353)
T ss_dssp ECT----TTTTTCCEEEEEEEEETTCCEECTTTT-----TTCSEEEEEEEECSCSTTH----HHHHHHHTTTEEEEEEES
T ss_pred cCH----HHccCCCCCCEEECCCCCcCccCHHHH-----hccccCCeecCCCCccccc----hhhhhhhcccccEEECCC
Confidence 322 235567888888888887765432222 3556777777777777553 122234567777777777
Q ss_pred CCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCC
Q 007838 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (588)
Q Consensus 397 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (588)
|.+++.....+.. ......++.++++++.+++.+...++..+..+++|+.|++++|.++
T Consensus 232 n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 232 TDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp CBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred Ccccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 7666532222211 1233455566666666655555555555555555555555555544
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.4e-24 Score=238.57 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=112.6
Q ss_pred CCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHH--------------------HHHHHHhhCCCc
Q 007838 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE--------------------KIADALKQNRTI 417 (588)
Q Consensus 358 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L 417 (588)
+++|+.|++++|.+...+. .+.....+.+|++|++..+.+...... .-...+..+.++
T Consensus 370 l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CTTCCEEECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccchhhccccccccc--cccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 4678888888887654321 122334555666666665533221000 000112334566
Q ss_pred cEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhc
Q 007838 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY 497 (588)
Q Consensus 418 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 497 (588)
+.+++++|.+... ....+..++.|+.|++++|.+.... ....+..+++|++|+|++|+++...+..|..+
T Consensus 448 ~~l~ls~n~l~~~----~~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l--- 517 (635)
T 4g8a_A 448 IYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL--- 517 (635)
T ss_dssp CEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTTC---
T ss_pred ccccccccccccc----cccccccchhhhhhhhhhccccccc---CchhhhhccccCEEECCCCccCCcChHHHcCC---
Confidence 6666666655432 1222344567777777777532211 11233455778888888888877655554443
Q ss_pred CCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccc
Q 007838 498 NNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 498 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~ 573 (588)
++|++|+|++|+|.+. .+..+.++++|++|+|++|+|++. .+..+....++|+.|+|++|++.
T Consensus 518 -~~L~~L~Ls~N~l~~l----------~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 518 -SSLQVLNMSHNNFFSL----------DTFPYKCLNSLQVLDYSLNHIMTS--KKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp -TTCCEEECTTSCCCBC----------CCGGGTTCTTCCEEECTTSCCCBC--CSSCTTCCCTTCCEEECTTCCBC
T ss_pred -CCCCEEECCCCcCCCC----------ChhHHhCCCCCCEEECCCCcCCCC--CHHHHHhhhCcCCEEEeeCCCCc
Confidence 7888888888888766 456677888888888888888775 23344433356888888888775
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.5e-25 Score=221.25 Aligned_cols=275 Identities=15% Similarity=0.110 Sum_probs=130.2
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHH
Q 007838 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (588)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 298 (588)
+|+.|++++|.+.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.+.. ++..+
T Consensus 55 ~l~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~-----l~~~~ 121 (332)
T 2ft3_A 55 DTTLLDLQNNDISELR----KDDFKGLQHLYALVLVNNKISKIHE----KAFSPLRKLQKLYISKNHLVE-----IPPNL 121 (332)
T ss_dssp TCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECG----GGSTTCTTCCEEECCSSCCCS-----CCSSC
T ss_pred CCeEEECCCCcCCccC----HhHhhCCCCCcEEECCCCccCccCH----hHhhCcCCCCEEECCCCcCCc-----cCccc
Confidence 4555555555544321 1223344555555555555544321 122334555555555555431 11111
Q ss_pred hhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHH
Q 007838 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (588)
Q Consensus 299 ~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (588)
.++|++|++++|.++.... ..+..+++|++|++++|.+...+.. ...+ ..+ +|+.|++++|.++.
T Consensus 122 --~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~-~~l-~L~~L~l~~n~l~~----- 186 (332)
T 2ft3_A 122 --PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNPLENSGFE--PGAF-DGL-KLNYLRISEAKLTG----- 186 (332)
T ss_dssp --CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCCCBGGGSC--TTSS-CSC-CCSCCBCCSSBCSS-----
T ss_pred --cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCCccccCCCC--cccc-cCC-ccCEEECcCCCCCc-----
Confidence 1455555555555543221 1244556666666666655432110 0000 122 56666666665554
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
++.. ..++|++|++++|.+++. ....+..+++|++|++++|.++... ...+..+++|++|++++|.++.
T Consensus 187 l~~~--~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~- 255 (332)
T 2ft3_A 187 IPKD--LPETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMIE----NGSLSFLPTLRELHLDNNKLSR- 255 (332)
T ss_dssp CCSS--SCSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCCC----TTGGGGCTTCCEEECCSSCCCB-
T ss_pred cCcc--ccCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcCC----hhHhhCCCCCCEEECCCCcCee-
Confidence 2211 124566666666665543 1223444566666666666655431 1223445666666666666552
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHH--hcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhccc
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML--RYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML 536 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~ 536 (588)
+...+..+++|++|++++|+++..+...+.... ...+.|+.|++++|.+... ...+..+..+++|+
T Consensus 256 ----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--------~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 256 ----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--------EVQPATFRCVTDRL 323 (332)
T ss_dssp ----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--------GSCGGGGTTBCCST
T ss_pred ----cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc--------ccCcccccccchhh
Confidence 222234456666666666666555444332210 0125567777777776622 11345566666666
Q ss_pred chhhhhcc
Q 007838 537 FYSLCINY 544 (588)
Q Consensus 537 ~L~Ls~n~ 544 (588)
.+++++|+
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 66666653
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.5e-23 Score=219.76 Aligned_cols=314 Identities=18% Similarity=0.164 Sum_probs=135.7
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
..+++|++++|.++. ++. ..++|++|++++|.++... ...++|++|++++|.+.... ..
T Consensus 71 ~~l~~L~l~~~~l~~-----lp~---~~~~L~~L~l~~n~l~~lp--------~~~~~L~~L~l~~n~l~~l~-----~~ 129 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-----LPE---LPPHLESLVASCNSLTELP--------ELPQSLKSLLVDNNNLKALS-----DL 129 (454)
T ss_dssp HTCSEEECTTSCCSC-----CCS---CCTTCSEEECCSSCCSSCC--------CCCTTCCEEECCSSCCSCCC-----SC
T ss_pred cCCCEEEecCCcccc-----CCC---CcCCCCEEEccCCcCCccc--------cccCCCcEEECCCCccCccc-----CC
Confidence 445666666665543 111 1245666666666554311 11245666666666554311 00
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHH
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~ 321 (588)
.++|++|++++|.++... .+..+++|++|++++|+++. ++. ...+|++|++++|.++...
T Consensus 130 ---~~~L~~L~L~~n~l~~lp------~~~~l~~L~~L~l~~N~l~~-----lp~---~~~~L~~L~L~~n~l~~l~--- 189 (454)
T 1jl5_A 130 ---PPLLEYLGVSNNQLEKLP------ELQNSSFLKIIDVDNNSLKK-----LPD---LPPSLEFIAAGNNQLEELP--- 189 (454)
T ss_dssp ---CTTCCEEECCSSCCSSCC------CCTTCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSSCC---
T ss_pred ---CCCCCEEECcCCCCCCCc------ccCCCCCCCEEECCCCcCcc-----cCC---CcccccEEECcCCcCCcCc---
Confidence 145666666666555421 13344556666666665532 111 1235566666665554321
Q ss_pred HHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCCh
Q 007838 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (588)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 401 (588)
.+..+++|++|++++|.+.+. . ...++|++|++++|.++. ++ .+..+++|++|++++|.++.
T Consensus 190 ---~~~~l~~L~~L~l~~N~l~~l-----~----~~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 190 ---ELQNLPFLTAIYADNNSLKKL-----P----DLPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp ---CCTTCTTCCEEECCSSCCSSC-----C----CCCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS
T ss_pred ---cccCCCCCCEEECCCCcCCcC-----C----CCcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCc
Confidence 244555566666665555431 0 111345555555555553 22 13455555555555555543
Q ss_pred HHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHH-------------HHh
Q 007838 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE-------------VLK 468 (588)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------~l~ 468 (588)
. +. ..++|++|++++|.++.. +. ..++|+.|++++|.++.... +.. .+.
T Consensus 252 l-----~~---~~~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~ls~N~l~~l~~--~~~~L~~L~l~~N~l~~i~ 313 (454)
T 1jl5_A 252 L-----PD---LPPSLEALNVRDNYLTDL-----PE---LPQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRSLC 313 (454)
T ss_dssp C-----CS---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSEEC
T ss_pred c-----cc---cccccCEEECCCCccccc-----Cc---ccCcCCEEECcCCccCcccC--cCCcCCEEECcCCcCCccc
Confidence 1 11 124555555555554421 10 11445555555554443100 000 000
Q ss_pred hC-CCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 469 FH-GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 469 ~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
.. ++|++|++++|++++... ..++|++|++++|++.+ +|. .+++|++|++++|++++
T Consensus 314 ~~~~~L~~L~Ls~N~l~~lp~--------~~~~L~~L~L~~N~l~~-----------lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 314 DLPPSLEELNVSNNKLIELPA--------LPPRLERLIASFNHLAE-----------VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-----------CCC---CCTTCCEEECCSSCCSS
T ss_pred CCcCcCCEEECCCCccccccc--------cCCcCCEEECCCCcccc-----------ccc---hhhhccEEECCCCCCCc
Confidence 11 244555555554443211 01445555555555443 233 36788888888888877
Q ss_pred HHHHHHHHHhh------------hhccceeeccCCcccc
Q 007838 548 AKCLAQSFKVV------------NEALTSIDLAFNEIRV 574 (588)
Q Consensus 548 ~~~l~~~~~~~------------~~~L~~L~ls~N~i~~ 574 (588)
...++..+..+ .++|+.||+++|+++.
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCCCCTTCCEEECCC------------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 21122222111 1568888888888875
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.2e-24 Score=219.41 Aligned_cols=298 Identities=18% Similarity=0.144 Sum_probs=172.8
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHH
Q 007838 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (588)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 298 (588)
+++.++++++.+... +..+ .++|++|++++|.++.... ..+..+++|++|++++|.++.. .+..+
T Consensus 34 ~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 467777777765532 1111 2578888888888776432 2244567788888888877632 23455
Q ss_pred hhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHH
Q 007838 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (588)
Q Consensus 299 ~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (588)
..+++|++|++++|.++.... .+ .++|++|++++|.+.......+ ..+++|++|++++|.++..+.
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~-----~~--~~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-- 164 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPP-----NL--PSSLVELRIHDNRIRKVPKGVF-----SGLRNMNCIEMGGNPLENSGF-- 164 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCS-----SC--CTTCCEEECCSSCCCCCCSGGG-----SSCSSCCEEECCSCCCBGGGS--
T ss_pred hCcCCCCEEECCCCcCCccCc-----cc--cccCCEEECCCCccCccCHhHh-----CCCccCCEEECCCCccccCCC--
Confidence 667788888888887664321 11 2678888888877764322112 456678888888777754221
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
.+..+..+ +|++|++++|.++.. +..+ .++|++|++++|.++... ...+..+++|+.|++++|.++..
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGI-----PKDL--PETLNELHLDHNKIQAIE----LEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSC-----CSSS--CSSCSCCBCCSSCCCCCC----TTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CcccccCC-ccCEEECcCCCCCcc-----Cccc--cCCCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCCcC
Confidence 12223344 777777777776652 2111 257777777777776532 22344557777777777776654
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccch
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFY 538 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L 538 (588)
... .+..+++|++|++++|+++.... .+..+++|++|++++|++++..+..+.... .....+.|+.|
T Consensus 233 ~~~----~~~~l~~L~~L~L~~N~l~~lp~-----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~----~~~~~~~l~~L 299 (332)
T 2ft3_A 233 ENG----SLSFLPTLRELHLDNNKLSRVPA-----GLPDLKLLQVVYLHTNNITKVGVNDFCPVG----FGVKRAYYNGI 299 (332)
T ss_dssp CTT----GGGGCTTCCEEECCSSCCCBCCT-----TGGGCTTCCEEECCSSCCCBCCTTSSSCSS----CCSSSCCBSEE
T ss_pred Chh----HhhCCCCCCEEECCCCcCeecCh-----hhhcCccCCEEECCCCCCCccChhHccccc----cccccccccce
Confidence 221 23455777777777777764321 134447777777777777765211111000 00114567777
Q ss_pred hhhhccchhHHHHHHHHHhhhhccceeeccCCc
Q 007838 539 SLCINYLQGAKCLAQSFKVVNEALTSIDLAFNE 571 (588)
Q Consensus 539 ~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~ 571 (588)
++++|.+......+..+..+ +.|+.|++++|+
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l-~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCV-TDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTB-CCSTTEEC----
T ss_pred EeecCcccccccCccccccc-chhhhhhccccc
Confidence 77777765332233445544 677777777764
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.5e-24 Score=214.80 Aligned_cols=252 Identities=17% Similarity=0.187 Sum_probs=149.1
Q ss_pred CCccEEEccCCCCCh--HHHHHHHHHHhhCCCCCEEEecC-CCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHH
Q 007838 218 IALKTLNLSGNPIGD--EGVKCLCDILVDNAGVERLQLSS-VDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294 (588)
Q Consensus 218 ~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 294 (588)
.+++.|++++|.+.+ . ++..+..+++|++|++++ |.+... ++..+..+++|++|++++|.++. .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~----~~~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP----IPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSG----AI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEE----CCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEE----EC
T ss_pred ceEEEEECCCCCccCCcc----cChhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCC----cC
Confidence 457777777777654 2 234455566677777663 554432 12223445666666666666541 22
Q ss_pred HHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChh
Q 007838 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK 374 (588)
Q Consensus 295 ~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 374 (588)
+..+..+++|++|++++|.++.. ++..+..+ ++|++|++++|.++..
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-----------------------------~~L~~L~L~~N~l~~~ 164 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGT----LPPSISSL-----------------------------PNLVGITFDGNRISGA 164 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESC----CCGGGGGC-----------------------------TTCCEEECCSSCCEEE
T ss_pred CHHHhCCCCCCEEeCCCCccCCc----CChHHhcC-----------------------------CCCCeEECcCCcccCc
Confidence 33334445555555555443311 11223334 4555555555555432
Q ss_pred hHHHHHHHHhcCC-CCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCC
Q 007838 375 GAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453 (588)
Q Consensus 375 ~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (588)
++..+..++ +|++|++++|.++.. ++..+..+. |++|++++|.++.. .+..+..+++|+.|++++|
T Consensus 165 ----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 165 ----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp ----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSS
T ss_pred ----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCC
Confidence 333344554 666666666665533 233344444 77777777766543 3334455677777777777
Q ss_pred CCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhh
Q 007838 454 PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLK 533 (588)
Q Consensus 454 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~ 533 (588)
.++..... +..+++|++|++++|++++..+..+.. +++|++|+|++|++.+. +|.. ..++
T Consensus 232 ~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~----l~~L~~L~Ls~N~l~~~----------ip~~-~~l~ 291 (313)
T 1ogq_A 232 SLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGLTQ----LKFLHSLNVSFNNLCGE----------IPQG-GNLQ 291 (313)
T ss_dssp EECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGGGG----CTTCCEEECCSSEEEEE----------CCCS-TTGG
T ss_pred ceeeecCc-----ccccCCCCEEECcCCcccCcCChHHhc----CcCCCEEECcCCccccc----------CCCC-cccc
Confidence 76543211 345578999999999887655544444 49999999999999988 4444 7899
Q ss_pred cccchhhhhcc-chh
Q 007838 534 HMLFYSLCINY-LQG 547 (588)
Q Consensus 534 ~L~~L~Ls~n~-l~~ 547 (588)
+|+.|++++|. +.|
T Consensus 292 ~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 292 RFDVSAYANNKCLCG 306 (313)
T ss_dssp GSCGGGTCSSSEEES
T ss_pred ccChHHhcCCCCccC
Confidence 99999999998 555
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=3.9e-23 Score=206.70 Aligned_cols=260 Identities=21% Similarity=0.213 Sum_probs=159.4
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHH
Q 007838 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (588)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 298 (588)
.++.++++.+.+... +......+++|++|++++|.++.... ..+..+++|++|++++|.+.... . +
T Consensus 11 ~l~i~~ls~~~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~-----~-~ 76 (317)
T 3o53_A 11 RYKIEKVTDSSLKQA----LASLRQSAWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETL-----D-L 76 (317)
T ss_dssp EEEEESCCTTTHHHH----HHHHHTTGGGCSEEECTTSCCCCCCH----HHHTTCTTCCEEECTTSCCEEEE-----E-E
T ss_pred ceeEeeccccchhhh----HHHHhccCCCCCEEECcCCccCcCCH----HHhhCCCcCCEEECCCCcCCcch-----h-h
Confidence 355566666555322 33444456678888888888876533 33455677888888888775321 1 5
Q ss_pred hhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHH
Q 007838 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (588)
Q Consensus 299 ~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (588)
..+++|++|++++|.++.. ...++|++|++++|.+..... ..+++|++|++++|.++..
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~---- 135 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML---- 135 (317)
T ss_dssp TTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSG----
T ss_pred hhcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCc----
Confidence 5677888888888776532 245778888888877765321 2345677777777777763
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHH-hhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCCh
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (588)
.+..+..+++|++|++++|.+++.. ...+ ..+++|++|++++|.++... ....+++|++|++++|.++.
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCE
T ss_pred cchhhhccCCCCEEECCCCCCCccc----HHHHhhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCc
Confidence 2223456677777777777776642 1122 24567777777777766431 11234677777777776664
Q ss_pred HHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCC-cccccCCCCchhhhhhHhhhhccc
Q 007838 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR-DEVCSGCNGLSFFHSAIYSLKHML 536 (588)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~~~~~~~~l~~L~ 536 (588)
... .+..+++|++|++++|+++... ..+..+++|++|++++|.+. +. ++..+..+++|+
T Consensus 206 l~~-----~~~~l~~L~~L~L~~N~l~~l~-----~~~~~l~~L~~L~l~~N~~~~~~----------~~~~~~~~~~L~ 265 (317)
T 3o53_A 206 MGP-----EFQSAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLRGNGFHCGT----------LRDFFSKNQRVQ 265 (317)
T ss_dssp ECG-----GGGGGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECTTCCCBHHH----------HHHHHHTCHHHH
T ss_pred chh-----hhcccCcccEEECcCCcccchh-----hHhhcCCCCCEEEccCCCccCcC----------HHHHHhccccce
Confidence 321 1344566777777777766432 12334467777777777776 33 566666777777
Q ss_pred chhhhhc
Q 007838 537 FYSLCIN 543 (588)
Q Consensus 537 ~L~Ls~n 543 (588)
.|++++|
T Consensus 266 ~l~l~~~ 272 (317)
T 3o53_A 266 TVAKQTV 272 (317)
T ss_dssp HHHHHHH
T ss_pred EEECCCc
Confidence 7776644
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=2.3e-22 Score=201.04 Aligned_cols=244 Identities=20% Similarity=0.153 Sum_probs=143.8
Q ss_pred HHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHH
Q 007838 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (588)
Q Consensus 268 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (588)
.....+++|++|++++|.++.. .+..+..+++|++|++++|.++.... +..+++|++|++++|.+.+.
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l-- 95 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL-- 95 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCC----CHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEE--
T ss_pred HHhccCCCCCEEECcCCccCcC----CHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccccc--
Confidence 3333445677777777776532 23445566777777777776654321 55667777777777766542
Q ss_pred HHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcC
Q 007838 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (588)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (588)
...++|++|++++|.++... ...+++|++|++++|.++.. ....+..+++|++|++++|.+
T Consensus 96 --------~~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 96 --------LVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp --------EECTTCCEEECCSSCCSEEE-------ECCCSSCEEEECCSSCCCSG----GGBCTGGGSSEEEEECTTSCC
T ss_pred --------cCCCCcCEEECCCCccCCcC-------ccccCCCCEEECCCCCCCCc----cchhhhccCCCCEEECCCCCC
Confidence 12356777777777766531 12356677777777777653 122344456777777777776
Q ss_pred CHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEee
Q 007838 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (588)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 507 (588)
+......+ ...+++|++|++++|.++... ....+++|++|++++|+++..... +. .+++|++|+|+
T Consensus 157 ~~~~~~~~---~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~l~~~-~~----~l~~L~~L~L~ 222 (317)
T 3o53_A 157 DTVNFAEL---AASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGPE-FQ----SAAGVTWISLR 222 (317)
T ss_dssp CEEEGGGG---GGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECGG-GG----GGTTCSEEECT
T ss_pred CcccHHHH---hhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCcchhh-hc----ccCcccEEECc
Confidence 65422111 123467777777777665431 111246777777777777655332 22 23677777777
Q ss_pred cCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccC
Q 007838 508 ANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF 569 (588)
Q Consensus 508 ~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~ 569 (588)
+|++.+. |..+..+++|+.|+|++|.++.. .++..+... +.|+.|++++
T Consensus 223 ~N~l~~l-----------~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~-~~L~~l~l~~ 271 (317)
T 3o53_A 223 NNKLVLI-----------EKALRFSQNLEHFDLRGNGFHCG-TLRDFFSKN-QRVQTVAKQT 271 (317)
T ss_dssp TSCCCEE-----------CTTCCCCTTCCEEECTTCCCBHH-HHHHHHHTC-HHHHHHHHHH
T ss_pred CCcccch-----------hhHhhcCCCCCEEEccCCCccCc-CHHHHHhcc-ccceEEECCC
Confidence 7777643 55566667777777777777621 244444444 5666666663
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=3.4e-23 Score=206.60 Aligned_cols=212 Identities=15% Similarity=0.174 Sum_probs=118.4
Q ss_pred CCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcC-----CCCcEEEccCCCCChHH
Q 007838 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-----KSLLWINLYMNDIGDEG 403 (588)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-----~~L~~L~L~~n~l~~~~ 403 (588)
+++|++|++++|.+.+.....+ +...+++|++|++++|.++.. +..+..+ ++|++|++++|.++..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~~~~~~L~~L~L~~N~l~~~- 164 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPL---LEATGPDLNILNLRNVSWATR-----DAWLAELQQWLKPGLKVLSIAQAHSLNF- 164 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCS---SSCCSCCCSEEEEESCBCSSS-----SSHHHHHHTTCCTTCCEEEEESCSCCCC-
T ss_pred cCCccEEEccCCcccchhHHHH---HHhcCCCccEEEccCCCCcch-----hHHHHHHHHhhcCCCcEEEeeCCCCccc-
Confidence 4455555555555443211100 002344555555555555542 1111222 5666666666666543
Q ss_pred HHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH--hcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccC
Q 007838 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL--KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (588)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (588)
.+..+..+++|++|++++|++.+.. .+...+ ..+++|++|++++|.++..+. .....+..+++|++|++++|
T Consensus 165 ---~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 165 ---SCEQVRVFPALSTLDLSDNPELGER--GLISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp ---CTTTCCCCSSCCEEECCSCTTCHHH--HHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTS
T ss_pred ---hHHHhccCCCCCEEECCCCCcCcch--HHHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCC
Confidence 2233445566666666666655321 122222 455777777777777663211 12233344567777777777
Q ss_pred CCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhc
Q 007838 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEA 561 (588)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~ 561 (588)
+++...+.. .+...++|++|+|++|+++.. |..+. ++|++|+|++|+|++. +. +..+ ++
T Consensus 239 ~l~~~~~~~---~~~~l~~L~~L~Ls~N~l~~i-----------p~~~~--~~L~~L~Ls~N~l~~~---p~-~~~l-~~ 297 (312)
T 1wwl_A 239 SLRDAAGAP---SCDWPSQLNSLNLSFTGLKQV-----------PKGLP--AKLSVLDLSYNRLDRN---PS-PDEL-PQ 297 (312)
T ss_dssp CCCSSCCCS---CCCCCTTCCEEECTTSCCSSC-----------CSSCC--SEEEEEECCSSCCCSC---CC-TTTS-CE
T ss_pred cCCcccchh---hhhhcCCCCEEECCCCccChh-----------hhhcc--CCceEEECCCCCCCCC---hh-HhhC-CC
Confidence 776643110 112237888888888888733 44443 7888888888888875 22 4444 78
Q ss_pred cceeeccCCccccCc
Q 007838 562 LTSIDLAFNEIRVSN 576 (588)
Q Consensus 562 L~~L~ls~N~i~~~~ 576 (588)
|++|+|++|+|+++|
T Consensus 298 L~~L~L~~N~l~~~~ 312 (312)
T 1wwl_A 298 VGNLSLKGNPFLDSE 312 (312)
T ss_dssp EEEEECTTCTTTCCC
T ss_pred CCEEeccCCCCCCCC
Confidence 999999999988764
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=6.4e-21 Score=206.02 Aligned_cols=260 Identities=17% Similarity=0.096 Sum_probs=137.4
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007838 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (588)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (588)
..++.|+++++.++. ++..+ .++|++|++++|.|+... . .+++|++|++++|.++.. +.
T Consensus 40 ~~l~~L~ls~n~L~~-----lp~~l--~~~L~~L~L~~N~l~~lp-----~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-----LPDCL--PAHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSC-----CCSCC--CTTCSEEEECSCCCSCCC-----C---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCc-----cChhh--CCCCcEEEecCCCCCCCC-----C---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 457888888887764 33222 267778888877775321 1 345677777777766532 11
Q ss_pred HhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHH
Q 007838 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (588)
Q Consensus 242 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~ 321 (588)
.+++|++|++++|.++.... ..++|+.|++++|+++. ++. .++
T Consensus 99 --~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~-----lp~---~l~------------------- 141 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTS-----LPV---LPP------------------- 141 (622)
T ss_dssp --CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSC-----CCC---CCT-------------------
T ss_pred --CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCc-----CCC---CCC-------------------
Confidence 34666666666666554211 23455666666555532 111 124
Q ss_pred HHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCCh
Q 007838 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (588)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 401 (588)
+|++|++++|.+.... ...++|+.|++++|.++. ++ ..+++|+.|++++|.++.
T Consensus 142 ---------~L~~L~Ls~N~l~~l~---------~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 142 ---------GLQELSVSDNQLASLP---------ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ---------TCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC
T ss_pred ---------CCCEEECcCCcCCCcC---------CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC
Confidence 4445555544443210 112345555555555544 22 234455555555555543
Q ss_pred HHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccC
Q 007838 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (588)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (588)
. .. ..++|+.|++++|.++.. .. ..++|+.|++++|.|+... ..+++|++|++++|
T Consensus 196 l-----~~---~~~~L~~L~L~~N~l~~l-----~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 196 L-----PT---LPSELYKLWAYNNRLTSL-----PA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGN 251 (622)
T ss_dssp C-----CC---CCTTCCEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS
T ss_pred C-----CC---ccchhhEEECcCCccccc-----CC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCC
Confidence 1 11 124555555555555421 11 1255666666666555421 22356666666666
Q ss_pred CCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
+|+.... ..++|++|+|++|+|... |..+.++++|+.|+|++|.+++.
T Consensus 252 ~L~~lp~--------~~~~L~~L~Ls~N~L~~l-----------p~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 252 RLTSLPM--------LPSGLLSLSVYRNQLTRL-----------PESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCSCCCC--------CCTTCCEEECCSSCCCSC-----------CGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCcCCc--------ccccCcEEeCCCCCCCcC-----------CHHHhhccccCEEEecCCCCCCc
Confidence 6654322 236677777777766633 55666677777777777776654
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=7.2e-23 Score=203.80 Aligned_cols=195 Identities=9% Similarity=0.137 Sum_probs=116.4
Q ss_pred CCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHH
Q 007838 357 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 436 (588)
Q Consensus 357 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 436 (588)
.+++|++|++++|.++.... ...+..+++|++|++++|.++.. ....+..+++|++|++++|.+++. .++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~~ 168 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQEN---FLP 168 (306)
T ss_dssp TCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEGGG---EEC
T ss_pred CCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCccccc---cch
Confidence 34456666666555443210 02345566666666666666543 233345566777777777766541 122
Q ss_pred HHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccc
Q 007838 437 RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVC 516 (588)
Q Consensus 437 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 516 (588)
..+..+++|+.|++++|.+++... ..+..+++|++|++++|+++......+ ..+++|++|++++|++.+.
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~-- 238 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLDTFPY----KCLNSLQVLDYSLNHIMTS-- 238 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCSBCCSGGG----TTCTTCCEEECTTSCCCBC--
T ss_pred hHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCccCccChhhc----cCcccCCEeECCCCCCccc--
Confidence 344556777777887777765422 233455778888888888776544333 3348889999999988877
Q ss_pred cCCCCchhhhhhHhhh-hcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCccccc
Q 007838 517 SGCNGLSFFHSAIYSL-KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFF 580 (588)
Q Consensus 517 ~~~~~l~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l 580 (588)
.+..+..+ ++|++|+|++|.+++........+.+ ...+.+.+..+.+.-.....+
T Consensus 239 --------~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l-~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 239 --------KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI-KDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp --------SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH-HHTGGGBSCGGGCBEEESGGG
T ss_pred --------CHHHHHhhhccCCEEEccCCCeecccChHHHHHHH-HhhhhhhccccccccCCchhh
Confidence 45556666 48889999999887543332222222 445566666666655444333
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=4e-23 Score=205.68 Aligned_cols=234 Identities=15% Similarity=0.199 Sum_probs=174.6
Q ss_pred CCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhH--HHHHHHHHhcCCCCceEEEccCCCCChhhHHHH
Q 007838 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG--IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (588)
Q Consensus 302 ~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (588)
++|++|++++|.++.... ..+..+++|++|++++|.+...+ ...+ ..+++|++|++++|.++. +
T Consensus 28 ~~l~~L~L~~n~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~~~~L~~L~Ls~n~i~~-----l 93 (306)
T 2z66_A 28 SSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSD-----FGTTSLKYLDLSFNGVIT-----M 93 (306)
T ss_dssp TTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCEEEEEEHHH-----HSCSCCCEEECCSCSEEE-----E
T ss_pred CCCCEEECCCCccCccCH----hHhhccccCCEEECCCCccCcccCccccc-----ccccccCEEECCCCcccc-----C
Confidence 567777777777664332 22557888999999988887432 1222 246789999999998775 3
Q ss_pred HHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHH
Q 007838 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (588)
Q Consensus 380 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (588)
+..+..+++|++|++++|.++.... ...+..+++|++|++++|.++.. ....+..+++|++|++++|.+++..
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEGGGE
T ss_pred hhhcCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCcccccc
Confidence 4446778999999999998876321 12466789999999999988754 3344566799999999999886521
Q ss_pred HHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchh
Q 007838 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYS 539 (588)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 539 (588)
+...+..+++|++|++++|+++...+..+.. +++|++|+|++|.+.+. .+..+..+++|++|+
T Consensus 167 ---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 167 ---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----LSSLQVLNMSHNNFFSL----------DTFPYKCLNSLQVLD 229 (306)
T ss_dssp ---ECSCCTTCTTCCEEECTTSCCCEECTTTTTT----CTTCCEEECTTSCCSBC----------CSGGGTTCTTCCEEE
T ss_pred ---chhHHhhCcCCCEEECCCCCcCCcCHHHhcC----CCCCCEEECCCCccCcc----------ChhhccCcccCCEeE
Confidence 2233456789999999999998876655544 49999999999999977 345688999999999
Q ss_pred hhhccchhHHHHHHHHHhhhhccceeeccCCccccC
Q 007838 540 LCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVS 575 (588)
Q Consensus 540 Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~ 575 (588)
|++|.+++. .+..+....++|+.|+|++|+++..
T Consensus 230 L~~N~l~~~--~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 230 YSLNHIMTS--KKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTSCCCBC--SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCCCccc--CHHHHHhhhccCCEEEccCCCeecc
Confidence 999999875 2233433324899999999999753
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=5.8e-21 Score=206.37 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=164.8
Q ss_pred CCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHH
Q 007838 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (588)
Q Consensus 274 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (588)
++|++|+|++|+|+. ++. .+++|++|++++|.++.... .+++|++|++++|.++.. .
T Consensus 81 ~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~l-----p-- 137 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-----LPV---LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSL-----P-- 137 (622)
T ss_dssp TTCCEEEECSCCCSC-----CCC---CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCC-----C--
T ss_pred CCCCEEEcCCCcCCc-----CCC---CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcC-----C--
Confidence 456666666665532 111 34666666666666554321 356888899988887652 1
Q ss_pred HhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHH
Q 007838 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (588)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (588)
...++|++|++++|.++. ++ ...++|+.|++++|.++.. + ..+++|+.|++++|.++..
T Consensus 138 --~~l~~L~~L~Ls~N~l~~-----l~---~~~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~l~~l--- 196 (622)
T 3g06_A 138 --VLPPGLQELSVSDNQLAS-----LP---ALPSELCKLWAYNNQLTSL-----P---MLPSGLQELSVSDNQLASL--- 196 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC---
T ss_pred --CCCCCCCEEECcCCcCCC-----cC---CccCCCCEEECCCCCCCCC-----c---ccCCCCcEEECCCCCCCCC---
Confidence 234789999999999887 32 2457899999999999873 2 3468999999999998842
Q ss_pred HHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCc
Q 007838 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (588)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 513 (588)
.. ..++|+.|++++|.++... ...++|++|++++|+++... ..+++|++|+|++|+|..
T Consensus 197 --~~---~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 197 --PT---LPSELYKLWAYNNRLTSLP--------ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp --CC---CCTTCCEEECCSSCCSSCC--------CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSC
T ss_pred --CC---ccchhhEEECcCCcccccC--------CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCc
Confidence 11 2378999999999887532 12378999999999998754 234899999999999985
Q ss_pred ccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCccccc
Q 007838 514 EVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFF 580 (588)
Q Consensus 514 ~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l 580 (588)
. |. .+++|+.|+|++|+|+. ++..+..+ ++|+.|+|++|+|+......+
T Consensus 256 l-----------p~---~~~~L~~L~Ls~N~L~~---lp~~l~~l-~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 256 L-----------PM---LPSGLLSLSVYRNQLTR---LPESLIHL-SSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp C-----------CC---CCTTCCEEECCSSCCCS---CCGGGGGS-CTTCEEECCSCCCCHHHHHHH
T ss_pred C-----------Cc---ccccCcEEeCCCCCCCc---CCHHHhhc-cccCEEEecCCCCCCcCHHHH
Confidence 5 33 57899999999999985 44556666 899999999999987655433
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.3e-22 Score=199.85 Aligned_cols=136 Identities=12% Similarity=0.080 Sum_probs=86.7
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHH
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (588)
..+++|++|++++|.++. ++..+..+++|++|+|++|.++. ++..+..+++|++|++++|.+... +
T Consensus 180 ~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~ 245 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----Y 245 (328)
T ss_dssp EESTTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----C
T ss_pred ccCCCCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----h
Confidence 346777777777777763 44456667777777777777763 233455667777777777765543 2
Q ss_pred HHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhc
Q 007838 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (588)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n 543 (588)
...+..+++|++|+|++|.+....+..+. .+++|++|+|++|++.+. +|+.++++++|+.+++..+
T Consensus 246 p~~~~~l~~L~~L~L~~n~~~~~~p~~~~----~l~~L~~L~L~~n~~~~~----------iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIH----RLTQLEKLDLRGCVNLSR----------LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCTTCCCCCCEEECTTCTTCCBCCTTGG----GCTTCCEEECTTCTTCCC----------CCGGGGGSCTTCEEECCGG
T ss_pred HHHhcCCCCCCEEECCCCCchhhcchhhh----cCCCCCEEeCCCCCchhh----------ccHHHhhccCceEEeCCHH
Confidence 22334456777777777665554443333 337777777777777766 6677777777777777766
Q ss_pred cchh
Q 007838 544 YLQG 547 (588)
Q Consensus 544 ~l~~ 547 (588)
.+..
T Consensus 312 ~~~~ 315 (328)
T 4fcg_A 312 LQAQ 315 (328)
T ss_dssp GSCC
T ss_pred HHHH
Confidence 6544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=4.6e-22 Score=198.42 Aligned_cols=191 Identities=20% Similarity=0.150 Sum_probs=112.1
Q ss_pred hcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007838 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (588)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 406 (588)
..+++|++|++++|.+.+. ...+........++|++|++++|.++.. .+..+..+++|++|++++|.+... ..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~--~~ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQVRVFPALSTLDLSDNPELGE--RG 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC----CTTTCCCCSSCCEEECCSCTTCHH--HH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc----hHHHhccCCCCCEEECCCCCcCcc--hH
Confidence 3455666666666665543 1111111111124667777776666653 223445667777777777766543 11
Q ss_pred HHHHH--hhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCC
Q 007838 407 IADAL--KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (588)
Q Consensus 407 l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (588)
+...+ ..+++|++|++++|+++..+. .....+..+++|+.|++++|.+++.... ..+..+++|++|++++|+++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCSSCCC---SCCCCCTTCCEEECTTSCCS
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCcccch---hhhhhcCCCCEEECCCCccC
Confidence 22223 556777777777777763211 1222334557777777777777653210 11123467888888888877
Q ss_pred hhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 485 ASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
.... . +. ++|++|+|++|++.+. |. +..+++|++|+|++|.+++
T Consensus 267 ~ip~-~----~~--~~L~~L~Ls~N~l~~~-----------p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPK-G----LP--AKLSVLDLSYNRLDRN-----------PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCS-S----CC--SEEEEEECCSSCCCSC-----------CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhh-h----cc--CCceEEECCCCCCCCC-----------hh-HhhCCCCCEEeccCCCCCC
Confidence 4321 1 11 6788888888888866 44 7788888889998888875
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=7e-22 Score=198.31 Aligned_cols=181 Identities=14% Similarity=0.077 Sum_probs=132.7
Q ss_pred CCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHH---------HhhCCCccEEEeeCCcCCH
Q 007838 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA---------LKQNRTITTIDLGGNNIHS 429 (588)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~---------l~~~~~L~~L~Ls~n~i~~ 429 (588)
++|++|++++|.++. ++..+..+++|++|++++|.+... ++.. +..+++|++|+|++|.++.
T Consensus 127 ~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 127 AGLETLTLARNPLRA-----LPASIASLNRLRELSIRACPELTE----LPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197 (328)
T ss_dssp TTCSEEEEESCCCCC-----CCGGGGGCTTCCEEEEEEETTCCC----CCSCSEEEC-CCCEEESTTCCEEEEEEECCCC
T ss_pred CCCCEEECCCCcccc-----CcHHHhcCcCCCEEECCCCCCccc----cChhHhhccchhhhccCCCCCEEECcCCCcCc
Confidence 445555555555542 333445555666666665433322 2222 3347899999999999882
Q ss_pred HHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecC
Q 007838 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (588)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 509 (588)
++..+..+++|++|++++|.++.. ...+..+++|++|++++|++....+..+ ..+++|++|+|++|
T Consensus 198 -----lp~~l~~l~~L~~L~L~~N~l~~l-----~~~l~~l~~L~~L~Ls~n~~~~~~p~~~----~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 198 -----LPASIANLQNLKSLKIRNSPLSAL-----GPAIHHLPKLEELDLRGCTALRNYPPIF----GGRAPLKRLILKDC 263 (328)
T ss_dssp -----CCGGGGGCTTCCEEEEESSCCCCC-----CGGGGGCTTCCEEECTTCTTCCBCCCCT----TCCCCCCEEECTTC
T ss_pred -----chHhhcCCCCCCEEEccCCCCCcC-----chhhccCCCCCEEECcCCcchhhhHHHh----cCCCCCCEEECCCC
Confidence 455677889999999999998853 2345678999999999999877654444 34599999999999
Q ss_pred CCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccC
Q 007838 510 GLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVS 575 (588)
Q Consensus 510 ~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~ 575 (588)
++.+. +|..+..+++|++|+|++|.+.+. ++..+..+ ++|+.+++..|.+..-
T Consensus 264 ~~~~~----------~p~~~~~l~~L~~L~L~~n~~~~~--iP~~l~~L-~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 264 SNLLT----------LPLDIHRLTQLEKLDLRGCVNLSR--LPSLIAQL-PANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCCB----------CCTTGGGCTTCCEEECTTCTTCCC--CCGGGGGS-CTTCEEECCGGGSCC-
T ss_pred Cchhh----------cchhhhcCCCCCEEeCCCCCchhh--ccHHHhhc-cCceEEeCCHHHHHHH
Confidence 99887 778899999999999999998886 55667777 8899999998876543
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.3e-21 Score=193.26 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=99.5
Q ss_pred cCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHH
Q 007838 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (588)
Q Consensus 385 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (588)
.+++|++|+|++|.++.. .+..+..+++|++|+|++|++...........+..+++|++|++++|.++..... ..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CA 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HH
T ss_pred hccCCCEEEeeCCCcchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HH
Confidence 455666666666655443 2233445566666666666655332111111223456677777777776532211 11
Q ss_pred HHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhcc
Q 007838 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (588)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~ 544 (588)
..+..+++|++|+|++|+++...+..+..+ ...++|++|+|++|++... |..+. ++|++|+|++|+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~~~~~L~~L~Ls~N~l~~l-----------p~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRC-MWSSALNSLNLSFAGLEQV-----------PKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSC-CCCTTCCCEECCSSCCCSC-----------CSCCC--SCCSCEECCSCC
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhc-cCcCcCCEEECCCCCCCch-----------hhhhc--CCCCEEECCCCc
Confidence 123455677777777777766533222211 1126889999999988843 33332 789999999999
Q ss_pred chhHHHHHHHHHhhhhccceeeccCCccccCc
Q 007838 545 LQGAKCLAQSFKVVNEALTSIDLAFNEIRVSN 576 (588)
Q Consensus 545 l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~ 576 (588)
|++... +..+ ++|+.|+|++|+|++.|
T Consensus 284 l~~~~~----~~~l-~~L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 284 LNRAPQ----PDEL-PEVDNLTLDGNPFLVPG 310 (310)
T ss_dssp CCSCCC----TTSC-CCCSCEECSSTTTSCCC
T ss_pred CCCCch----hhhC-CCccEEECcCCCCCCCC
Confidence 987421 2333 78999999999999876
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=8.5e-22 Score=206.37 Aligned_cols=248 Identities=18% Similarity=0.129 Sum_probs=181.9
Q ss_pred CCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHh
Q 007838 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (588)
Q Consensus 247 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l 326 (588)
....++..+..++... ..+ .++++.|+|++|++.... +..+.++++|++|+|++|.++.... ..+
T Consensus 44 ~~~~v~c~~~~l~~iP-----~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREVP-----DGI--STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEI----GAF 108 (440)
T ss_dssp TSCEEECCSCCCSSCC-----SCC--CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECG----GGG
T ss_pred CCCEEEeCCCCcCcCC-----CCC--CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccCh----hhc
Confidence 4667888877776532 111 256899999999887432 3455678999999999998876543 346
Q ss_pred hcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC-CCChHHHH
Q 007838 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE 405 (588)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~ 405 (588)
..+++|++|+|++|.+.......+ ..+++|++|++++|.++.. ....+..+++|++|++++| .++..
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAF-----VYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTS-----CSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCeeCHhHh-----hccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee---
Confidence 678999999999998875322222 4678899999999988864 2234577889999999985 44432
Q ss_pred HHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCCh
Q 007838 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (588)
Q Consensus 406 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (588)
-...+..+++|++|+|++|+++... .+..+++|+.|+|++|.++.... ..+..+++|++|+|++|+++.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeE
Confidence 1124566789999999999887432 25666889999999998876533 334566889999999999888
Q ss_pred hHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccch
Q 007838 486 SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (588)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~ 546 (588)
.....+.. +++|++|+|++|++++. .+..+..+++|+.|+|++|.+.
T Consensus 246 ~~~~~~~~----l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDN----LQSLVEINLAHNNLTLL----------PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTT----CTTCCEEECTTSCCCCC----------CTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcC----CCCCCEEECCCCCCCcc----------ChhHhccccCCCEEEcCCCCcc
Confidence 76655444 48999999999999876 4556778889999999998875
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=4.2e-21 Score=188.92 Aligned_cols=252 Identities=15% Similarity=0.106 Sum_probs=187.8
Q ss_pred ccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHh
Q 007838 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS 355 (588)
Q Consensus 276 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 355 (588)
-++++.+++.++. ++.. ..++|++|++++|.++.... ..+..+++|++|++++|.+.+.....+
T Consensus 13 ~~~~~c~~~~l~~-----ip~~--~~~~l~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~----- 76 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-----VPVG--IPAASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDAAAF----- 76 (285)
T ss_dssp SCEEECCSSCCSS-----CCTT--CCTTCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTTTT-----
T ss_pred CeEEEcCcCCccc-----CCcC--CCCCceEEEeeCCcCCccCH----HHcccCCCCCEEECCCCccceeCHhhc-----
Confidence 3678888887753 2322 25789999999999876543 336678999999999999876533333
Q ss_pred cCCCCceEEEccCCC-CChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHH
Q 007838 356 SRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (588)
Q Consensus 356 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 434 (588)
..+++|++|++++|. ++.. .+..+..+++|++|++++|.++.. ....+..+++|++|++++|.++...
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--- 145 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSV----DPATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALP--- 145 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC---
T ss_pred CCccCCCEEeCCCCCCcccc----CHHHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccC---
Confidence 467899999999997 6663 244567889999999999998864 3445677899999999999987542
Q ss_pred HHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
...+..+++|+.|++++|.++..... .+..+++|++|++++|.++...+..+.. +++|++|++++|.+.+.
T Consensus 146 -~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 146 -DDTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFRD----LGRLMTLYLFANNLSAL 216 (285)
T ss_dssp -TTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTT----CTTCCEEECCSSCCSCC
T ss_pred -HhHhccCCCccEEECCCCcccccCHH----HhcCccccCEEECCCCcccccCHhHccC----cccccEeeCCCCcCCcC
Confidence 23356679999999999998864322 3455689999999999998876655544 49999999999999977
Q ss_pred cccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccCcc
Q 007838 515 VCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNI 577 (588)
Q Consensus 515 ~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~ 577 (588)
.+..+..+++|+.|+|++|.+.......... ..++.++.+.+.+.-...
T Consensus 217 ----------~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~----~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 217 ----------PTEALAPLRALQYLRLNDNPWVCDCRARPLW----AWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp ----------CHHHHTTCTTCCEEECCSSCEECSGGGHHHH----HHHHHCCSEECCCBEEES
T ss_pred ----------CHHHcccCcccCEEeccCCCccCCCCcHHHH----HHHHhcccccCccccCCc
Confidence 5567899999999999999987543333222 335566677776654443
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.7e-21 Score=191.75 Aligned_cols=249 Identities=17% Similarity=0.134 Sum_probs=182.9
Q ss_pred CEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhc
Q 007838 249 ERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328 (588)
Q Consensus 249 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~ 328 (588)
++++.+++.++.... ...++|++|++++|.++... +..+..+++|++|++++|.++.... ..+..
T Consensus 14 ~~~~c~~~~l~~ip~-------~~~~~l~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-------GIPAASQRIFLHGNRISHVP----AASFRACRNLTILWLHSNVLARIDA----AAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCT-------TCCTTCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTTT
T ss_pred eEEEcCcCCcccCCc-------CCCCCceEEEeeCCcCCccC----HHHcccCCCCCEEECCCCccceeCH----hhcCC
Confidence 678888887776421 12367999999999987532 2345678999999999998876532 34667
Q ss_pred CCCCCEEEccCCC-CChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHH
Q 007838 329 NKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (588)
Q Consensus 329 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 407 (588)
+++|++|++++|. +.......+ ..+++|++|++++|.++.. .+..+..+++|++|++++|.++.. .
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~ 145 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQAL----P 145 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----C
T ss_pred ccCCCEEeCCCCCCccccCHHHh-----cCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCccccc----C
Confidence 8999999999996 665432223 4678999999999998874 345567889999999999988864 2
Q ss_pred HHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhH
Q 007838 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (588)
Q Consensus 408 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (588)
...+..+++|++|++++|+++... ...+..+++|+.|++++|.+++... ..+..+++|++|++++|.++...
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVP----ERAFRGLHSLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSCCC
T ss_pred HhHhccCCCccEEECCCCcccccC----HHHhcCccccCEEECCCCcccccCH----hHccCcccccEeeCCCCcCCcCC
Confidence 234567899999999999988542 2235567999999999999887633 33456689999999999999876
Q ss_pred HHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 488 AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
...+.. +++|++|++++|.+... .........|+.+..+.+.+...
T Consensus 218 ~~~~~~----l~~L~~L~l~~N~~~c~-----------~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 218 TEALAP----LRALQYLRLNDNPWVCD-----------CRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp HHHHTT----CTTCCEEECCSSCEECS-----------GGGHHHHHHHHHCCSEECCCBEE
T ss_pred HHHccc----CcccCEEeccCCCccCC-----------CCcHHHHHHHHhcccccCccccC
Confidence 655544 49999999999999865 11112234455666777776644
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=3e-21 Score=204.29 Aligned_cols=236 Identities=20% Similarity=0.166 Sum_probs=109.5
Q ss_pred CccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHH
Q 007838 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (588)
Q Consensus 275 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 354 (588)
+|++|+|++|.++.. .+..+..+++|++|+|++|.++.... +..+++|++|++++|.+++.
T Consensus 35 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l--------- 95 (487)
T 3oja_A 35 NVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL--------- 95 (487)
T ss_dssp GCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEE---------
T ss_pred CccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCC---------
Confidence 444444444444321 12233344455555555554432211 33445555555555544431
Q ss_pred hcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHH
Q 007838 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (588)
Q Consensus 355 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 434 (588)
...++|++|++++|.++.... ..+++|++|++++|.++.. .+..+..+++|++|+|++|.+++.....
T Consensus 96 -~~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 96 -LVGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp -EECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred -CCCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 112345555555555544210 2234555555555555543 2222334455555555555555432111
Q ss_pred HHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
+ ...+++|+.|+|++|.|+... ....+++|++|+|++|.++...+. +.. +++|+.|+|++|.+.+.
T Consensus 164 l---~~~l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~-~~~----l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 164 L---AASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGPE-FQS----AAGVTWISLRNNKLVLI 229 (487)
T ss_dssp G---GGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECGG-GGG----GTTCSEEECTTSCCCEE
T ss_pred H---hhhCCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCCCCCHh-HcC----CCCccEEEecCCcCccc
Confidence 1 113355566666665554431 011245566666666666554332 222 26666666666666543
Q ss_pred cccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeecc
Q 007838 515 VCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLA 568 (588)
Q Consensus 515 ~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls 568 (588)
|..+..+++|+.|++++|.+... .++..+... +.|+.|+++
T Consensus 230 -----------p~~l~~l~~L~~L~l~~N~l~c~-~~~~~~~~l-~~L~~l~~~ 270 (487)
T 3oja_A 230 -----------EKALRFSQNLEHFDLRGNGFHCG-TLRDFFSKN-QRVQTVAKQ 270 (487)
T ss_dssp -----------CTTCCCCTTCCEEECTTCCBCHH-HHHHHHTTC-HHHHHHHHH
T ss_pred -----------chhhccCCCCCEEEcCCCCCcCc-chHHHHHhC-CCCcEEecc
Confidence 44455556666666666665521 133333333 455555553
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.5e-21 Score=203.54 Aligned_cols=247 Identities=18% Similarity=0.119 Sum_probs=183.1
Q ss_pred CCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhh
Q 007838 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (588)
Q Consensus 248 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~ 327 (588)
...++.++..++... ..+ .+++++|+|++|.|.... +..+.++++|++|++++|.++.... ..+.
T Consensus 56 ~~~v~c~~~~l~~iP-----~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-----QGI--PSNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIEV----GAFN 120 (452)
T ss_dssp SCEEECCSSCCSSCC-----SCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred CcEEEECCCCcCccC-----CCC--CCCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcCh----hhcc
Confidence 456666666655421 111 257999999999987432 4456678999999999998876542 3466
Q ss_pred cCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC-CCChHHHHH
Q 007838 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 406 (588)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~ 406 (588)
.+++|++|+|++|.+.......+ ..+++|++|++++|.++.. ....+..+++|++|++++| .++..
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i---- 187 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAF-----EYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYI---- 187 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTS-----SSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE----
T ss_pred CcccCCEEECCCCcCCccChhhh-----cccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCcccc----
Confidence 78999999999998875432222 4678999999999998864 2235678899999999984 55442
Q ss_pred HHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChh
Q 007838 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (588)
Q Consensus 407 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (588)
-...+..+++|++|+|++|++++.. .+..+++|+.|+|++|.++.... ..+..+++|++|++++|+++..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCCEE
T ss_pred ChhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCCcCceE
Confidence 1123566789999999999887531 35667899999999998887533 3445668999999999999887
Q ss_pred HHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccch
Q 007838 487 GAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (588)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~ 546 (588)
....+.. +++|++|+|++|++.+. .+..+..+++|+.|+|++|.+.
T Consensus 258 ~~~~~~~----l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNAFDG----LASLVELNLAHNNLSSL----------PHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTTTTT----CTTCCEEECCSSCCSCC----------CTTSSTTCTTCCEEECCSSCEE
T ss_pred CHHHhcC----CCCCCEEECCCCcCCcc----------ChHHhccccCCCEEEccCCCcC
Confidence 6655544 48999999999999866 4456778899999999999875
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1e-20 Score=198.84 Aligned_cols=249 Identities=17% Similarity=0.171 Sum_probs=184.8
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHh
Q 007838 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 299 (588)
Q Consensus 220 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 299 (588)
...++.+++.++.. +..+ .+++++|+|++|.++..... .+..+++|++|+|++|.|.... +..+.
T Consensus 56 ~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~----~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-----PQGI--PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIE----VGAFN 120 (452)
T ss_dssp SCEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEEC----TTTTT
T ss_pred CcEEEECCCCcCcc-----CCCC--CCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcC----hhhcc
Confidence 45566666555432 1111 26899999999999875433 3456689999999999987432 34566
Q ss_pred hCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCC-CCChhhHHH
Q 007838 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFH 378 (588)
Q Consensus 300 ~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 378 (588)
.+++|++|+|++|.++.... ..+..+++|++|++++|.+.......+ ..+++|+.|++++| .+...
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i---- 187 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPS----GAFEYLSKLRELWLRNNPIESIPSYAF-----NRVPSLMRLDLGELKKLEYI---- 187 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCT----TTSSSCTTCCEEECCSCCCCEECTTTT-----TTCTTCCEEECCCCTTCCEE----
T ss_pred CcccCCEEECCCCcCCccCh----hhhcccCCCCEEECCCCCcceeCHhHH-----hcCCcccEEeCCCCCCcccc----
Confidence 78999999999998875542 336678999999999999875432222 57789999999985 44442
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
-...+..+++|++|+|++|.+++. . .+..+++|++|+|++|.++.. ....+..+++|+.|++++|.++..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-----P-NLTPLVGLEELEMSGNHFPEI----RPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-----C-CCTTCTTCCEEECTTSCCSEE----CGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ChhhccCCCCCCEEECCCCccccc-----c-cccccccccEEECcCCcCccc----CcccccCccCCCEEEeCCCcCceE
Confidence 112457889999999999998863 2 356788999999999999865 234566779999999999998865
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
... .+..+++|++|+|++|+++......+. .+++|++|+|++|.+.-+
T Consensus 258 ~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 258 ERN----AFDGLASLVELNLAHNNLSSLPHDLFT----PLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTT----TTTTCTTCCEEECCSSCCSCCCTTSST----TCTTCCEEECCSSCEECS
T ss_pred CHH----HhcCCCCCCEEECCCCcCCccChHHhc----cccCCCEEEccCCCcCCC
Confidence 433 345668999999999999876654443 349999999999988755
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=9.8e-21 Score=198.31 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=184.6
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhCCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHh
Q 007838 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 299 (588)
Q Consensus 220 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 299 (588)
.+.++.+++.+... +..+ ..+++.|+|++|.++..... .+..+++|++|+|++|.+.... +..+.
T Consensus 45 ~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~----~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLREV-----PDGI--STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIE----IGAFN 109 (440)
T ss_dssp SCEEECCSCCCSSC-----CSCC--CTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEEC----GGGGT
T ss_pred CCEEEeCCCCcCcC-----CCCC--CCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccC----hhhcc
Confidence 45566666555432 2211 26799999999999876433 3456689999999999987432 34566
Q ss_pred hCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCC-CCChhhHHH
Q 007838 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFH 378 (588)
Q Consensus 300 ~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 378 (588)
.+++|++|+|++|.++.... ..+..+++|++|++++|.+.......+ ..+++|++|++++| .+...
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i---- 176 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGELKRLSYI---- 176 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCT----TTSCSCSSCCEEECCSCCCCEECTTTT-----TTCTTCCEEECCCCTTCCEE----
T ss_pred CCccCCEEECCCCcCCeeCH----hHhhccccCceeeCCCCcccccCHHHh-----hhCcccCEeCCCCCCCccee----
Confidence 78999999999998875542 236678999999999999876432222 46789999999985 44432
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
-...+..+++|++|++++|.++.. + .+..+++|++|+|++|.++... ...+..+++|+.|+|++|.|+..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEE
T ss_pred CcchhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCccC----hhhhccCccCCEEECCCCceeEE
Confidence 112457889999999999998863 2 3567889999999999988652 34566779999999999998875
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
.. ..+..+++|++|+|++|+++......+. .+++|+.|+|++|.+.-+
T Consensus 247 ~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 247 ER----NAFDNLQSLVEINLAHNNLTLLPHDLFT----PLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CT----TSSTTCTTCCEEECTTSCCCCCCTTTTS----SCTTCCEEECCSSCEECS
T ss_pred Ch----hhhcCCCCCCEEECCCCCCCccChhHhc----cccCCCEEEcCCCCccCC
Confidence 43 2345668999999999999877655444 349999999999998644
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.3e-20 Score=199.37 Aligned_cols=193 Identities=21% Similarity=0.195 Sum_probs=116.5
Q ss_pred hhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHH
Q 007838 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (588)
Q Consensus 299 ~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (588)
..+++|++|++++|.++.. ...++|++|++++|.+.+... ..+++|+.|++++|.++..
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l---------~~~~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~---- 135 (487)
T 3oja_A 77 ESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML---- 135 (487)
T ss_dssp TTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSG----
T ss_pred ccCCCCCEEEecCCcCCCC---------CCCCCcCEEECcCCcCCCCCc--------cccCCCCEEECCCCCCCCC----
Confidence 3455555555555554322 123566666666666654321 2335677777777776654
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHh-hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCCh
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (588)
.+..+..+++|++|+|++|.+++. .+..+. .+++|++|+|++|.++... ....+++|+.|+|++|.++.
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~~l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 136 RDLDEGCRSRVQYLDLKLNEIDTV----NFAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp GGBCGGGGSSEEEEECTTSCCCEE----EGGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCE
T ss_pred CchhhcCCCCCCEEECCCCCCCCc----ChHHHhhhCCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCCC
Confidence 233445566777777777777654 222222 4567777777777766431 12235777777777777765
Q ss_pred HHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccc
Q 007838 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLF 537 (588)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~ 537 (588)
... .+..+++|+.|+|++|.++.... .+..+++|+.|++++|.+... .+|..+..++.|+.
T Consensus 206 ~~~-----~~~~l~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~l~~N~l~c~---------~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 206 MGP-----EFQSAAGVTWISLRNNKLVLIEK-----ALRFSQNLEHFDLRGNGFHCG---------TLRDFFSKNQRVQT 266 (487)
T ss_dssp ECG-----GGGGGTTCSEEECTTSCCCEECT-----TCCCCTTCCEEECTTCCBCHH---------HHHHHHTTCHHHHH
T ss_pred CCH-----hHcCCCCccEEEecCCcCcccch-----hhccCCCCCEEEcCCCCCcCc---------chHHHHHhCCCCcE
Confidence 322 13455778888888887775321 234457888888888888722 25677777888888
Q ss_pred hhhh
Q 007838 538 YSLC 541 (588)
Q Consensus 538 L~Ls 541 (588)
++++
T Consensus 267 l~~~ 270 (487)
T 3oja_A 267 VAKQ 270 (487)
T ss_dssp HHHH
T ss_pred Eecc
Confidence 8776
No 82
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.76 E-value=1e-17 Score=152.96 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=63.8
Q ss_pred CCceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHH
Q 007838 359 GKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (588)
Q Consensus 359 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 437 (588)
+.|++|+|++| .+++.|+..++..+..+++|++|+|++|.+++.|+..++.++..+++|++|+|++|.|++.++..++.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 34444444444 44444444444444444445555555555555555555554444445555555555555555555555
Q ss_pred HHhcCCCcCEEEC--cCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChh
Q 007838 438 VLKDNSVITSLDL--AYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (588)
Q Consensus 438 ~l~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (588)
.+..+++|++|+| ++|.|++.+...+++.++.+++|++|+|++|.++..
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 5555555555555 445555555555555555555555555555554443
No 83
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.76 E-value=1.4e-17 Score=152.05 Aligned_cols=139 Identities=24% Similarity=0.222 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCCCcEEEccCC-CCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCC
Q 007838 376 AFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454 (588)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 454 (588)
.+.+...+..+++|++|+|++| .+++.|+..++.++..+++|++|+|++|.|++.++..+++.+..+++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3457888899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhCCCccEEEc--ccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 455 IGADGAKALSEVLKFHGNINTLKL--GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 455 i~~~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
|++.+...+++.+..+++|++|+| ++|.|++.+...+++++..+++|++|+|++|.+.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 999999999999999999999999 889999999999999999999999999999999866
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=4.5e-20 Score=183.85 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=15.4
Q ss_pred ccEEEccCCCCCHHHHHHHHHHhhcCCCccEEEeecCCC
Q 007838 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGI 202 (588)
Q Consensus 164 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i 202 (588)
++.+++.++.+++..+..+...+.. ++|++|++++|.+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l 103 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKI 103 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCC
T ss_pred eeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEe
Confidence 4444444444444443333332221 2344444444443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=7.3e-19 Score=174.69 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=149.2
Q ss_pred hCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHH
Q 007838 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (588)
Q Consensus 300 ~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (588)
.+++|++|++++|.++... .+..+++|++|++++|.+.+... + ..+++|++|++++|.+++.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~------~~~~l~~L~~L~L~~n~i~~~~~--~-----~~l~~L~~L~L~~n~l~~~----- 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE------GVQYLNNLIGLELKDNQITDLAP--L-----KNLTKITELELSGNPLKNV----- 100 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--G-----TTCCSCCEEECCSCCCSCC-----
T ss_pred HcCCcCEEEeeCCCccCch------hhhccCCCCEEEccCCcCCCChh--H-----ccCCCCCEEEccCCcCCCc-----
Confidence 3578899999998877542 36678899999999998876432 2 4677899999999988873
Q ss_pred HHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHH
Q 007838 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (588)
Q Consensus 380 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (588)
..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++... +..+++|+.|++++|.+++..
T Consensus 101 -~~~~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 101 -SAIAGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG
T ss_pred -hhhcCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCCCCh
Confidence 2467788999999999988773 1 26778889999999998875432 566788999999999887643
Q ss_pred HHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchh
Q 007838 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYS 539 (588)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 539 (588)
. +..+++|++|++++|+++.... +..+++|++|+|++|++.+. + .+..+++|+.|+
T Consensus 168 ~------l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~-----------~-~l~~l~~L~~L~ 223 (308)
T 1h6u_A 168 P------LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDV-----------S-PLANTSNLFIVT 223 (308)
T ss_dssp G------GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBC-----------G-GGTTCTTCCEEE
T ss_pred h------hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcc-----------c-cccCCCCCCEEE
Confidence 2 4667889999999988877643 45568899999999988876 2 378888899999
Q ss_pred hhhccchh
Q 007838 540 LCINYLQG 547 (588)
Q Consensus 540 Ls~n~l~~ 547 (588)
|++|.+++
T Consensus 224 l~~N~i~~ 231 (308)
T 1h6u_A 224 LTNQTITN 231 (308)
T ss_dssp EEEEEEEC
T ss_pred ccCCeeec
Confidence 99988876
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.5e-18 Score=170.88 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=154.5
Q ss_pred CCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHH
Q 007838 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (588)
Q Consensus 274 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (588)
++|++|++++|.+... ..+..+++|++|++++|.++.... +..+++|++|++++|.+.+.. .+
T Consensus 41 ~~L~~L~l~~~~i~~l------~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~--~~--- 103 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--AI--- 103 (308)
T ss_dssp HTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--GG---
T ss_pred CCcCEEEeeCCCccCc------hhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch--hh---
Confidence 6799999999988642 246678999999999998876542 678899999999999887642 22
Q ss_pred HhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHH
Q 007838 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (588)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (588)
..+++|++|++++|.+++. + .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++...
T Consensus 104 --~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~-----~-l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 104 --AGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNIS-----P-LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp --TTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred --cCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCc-----c-ccCCCCccEEEccCCcCCCChh-
Confidence 4678999999999998874 2 2688999999999999988742 1 6778999999999999886421
Q ss_pred HHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCc
Q 007838 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (588)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 513 (588)
+..+++|+.|++++|.+++... +..+++|++|++++|++++... +..+++|++|++++|.+.+
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP------LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCGG------GTTCTTCCEEEEEEEEEEC
T ss_pred -----hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcccc------ccCCCCCCEEEccCCeeec
Confidence 6677999999999999886532 5677899999999999988752 4556999999999999976
Q ss_pred c
Q 007838 514 E 514 (588)
Q Consensus 514 ~ 514 (588)
.
T Consensus 232 ~ 232 (308)
T 1h6u_A 232 Q 232 (308)
T ss_dssp C
T ss_pred C
Confidence 5
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.9e-19 Score=176.20 Aligned_cols=211 Identities=17% Similarity=0.105 Sum_probs=153.5
Q ss_pred CCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHH
Q 007838 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (588)
Q Consensus 302 ~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (588)
++|++|++++|.++.... ..+..+++|++|++++|.+.......+ ..+++|++|++++|.++.. .+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHLSTLILTGNPIQSL----ALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEECT----TTTTTCTTCSEEECTTCCCCEECTTTT-----TTCTTCCEEECTTCCCCEE----CTT
T ss_pred CCccEEECCCCcccccCH----hHhccccCCcEEECCCCcCCccCHHHc-----cCCcCCCEEECCCCccCcc----Chh
Confidence 579999999998876543 236678899999999998876432223 4667899999999988875 234
Q ss_pred HHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHH
Q 007838 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461 (588)
Q Consensus 382 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 461 (588)
.+..+++|++|++++|.+.... ...+..+++|++|++++|.++... ++..+..+++|+.|++++|.++.....
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred hhcCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHH
Confidence 5678889999999999887641 113566789999999999887532 344566778999999999988765444
Q ss_pred HHHHHHhhCCCcc-EEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhh
Q 007838 462 ALSEVLKFHGNIN-TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSL 540 (588)
Q Consensus 462 ~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~L 540 (588)
.+... ...+.+. +|++++|.++......+. ..+|++|++++|++.+. .+..+..+++|+.|+|
T Consensus 168 ~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~-----~~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 168 DLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTNQLKSV----------PDGIFDRLTSLQKIWL 231 (276)
T ss_dssp GGHHH-HTCTTCCEEEECCSSCCCEECTTSSC-----SCCEEEEECCSSCCSCC----------CTTTTTTCCSCCEEEC
T ss_pred Hhhhh-hhccccceeeecCCCcccccCccccC-----CCcccEEECCCCceeec----------CHhHhcccccccEEEc
Confidence 34332 3333333 889999988876443221 25799999999998866 3455678899999999
Q ss_pred hhccchhH
Q 007838 541 CINYLQGA 548 (588)
Q Consensus 541 s~n~l~~~ 548 (588)
++|.+++.
T Consensus 232 ~~N~~~c~ 239 (276)
T 2z62_A 232 HTNPWDCS 239 (276)
T ss_dssp CSSCBCCC
T ss_pred cCCccccc
Confidence 99988753
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2e-18 Score=168.35 Aligned_cols=198 Identities=19% Similarity=0.188 Sum_probs=118.2
Q ss_pred CCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHH
Q 007838 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (588)
Q Consensus 301 ~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (588)
+++|+.|++++|.++... .+..+++|++|++++|.+.+.. .+ ..+++|++|++++|.++.. .+
T Consensus 40 l~~L~~L~l~~~~i~~~~------~l~~l~~L~~L~l~~n~l~~~~--~l-----~~l~~L~~L~L~~n~l~~~----~~ 102 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ------GIQYLPNVRYLALGGNKLHDIS--AL-----KELTNLTYLILTGNQLQSL----PN 102 (272)
T ss_dssp HTTCCEEECTTSCCCCCT------TGGGCTTCCEEECTTSCCCCCG--GG-----TTCTTCCEEECTTSCCCCC----CT
T ss_pred ccceeeeeeCCCCccccc------ccccCCCCcEEECCCCCCCCch--hh-----cCCCCCCEEECCCCccCcc----Ch
Confidence 345555555555544321 2445566666666666555421 11 2455666666666666543 22
Q ss_pred HHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHH
Q 007838 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (588)
Q Consensus 381 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (588)
..+..+++|++|++++|.++.. ....+..+++|++|++++|.++... ...+..+++|+.|++++|.+++...
T Consensus 103 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLP----KGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hHhcCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCccC----HHHhccCccCCEEECCCCCcCccCH
Confidence 2345566677777777766543 2223455667777777777666331 1224455777777777777664322
Q ss_pred HHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhh
Q 007838 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSL 540 (588)
Q Consensus 461 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~L 540 (588)
..+..+++|++|++++|+++......+ ..+++|++|++++|.+... +++|+.|++
T Consensus 175 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~~~~~-----------------~~~l~~l~~ 229 (272)
T 3rfs_A 175 ----GVFDKLTQLKDLRLYQNQLKSVPDGVF----DRLTSLQYIWLHDNPWDCT-----------------CPGIRYLSE 229 (272)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSSCBCCC-----------------TTTTHHHHH
T ss_pred ----HHhcCCccCCEEECCCCcCCccCHHHH----hCCcCCCEEEccCCCcccc-----------------CcHHHHHHH
Confidence 223455778888888887776554333 3348888888888887755 556788888
Q ss_pred hhccchhH
Q 007838 541 CINYLQGA 548 (588)
Q Consensus 541 s~n~l~~~ 548 (588)
++|.++|.
T Consensus 230 ~~n~~~g~ 237 (272)
T 3rfs_A 230 WINKHSGV 237 (272)
T ss_dssp HHHHTGGG
T ss_pred HHHhCCCc
Confidence 88888775
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=6.9e-19 Score=172.20 Aligned_cols=211 Identities=18% Similarity=0.164 Sum_probs=145.5
Q ss_pred CCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHH
Q 007838 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (588)
Q Consensus 274 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (588)
++|++|++++|.++... +..+..+++|++|++++|.++.... ..+..+++|++|++++|.+.......+
T Consensus 28 ~~l~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~--- 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAF--- 96 (276)
T ss_dssp TTCCEEECTTCCCCEEC----TTTTTTCTTCSEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTT---
T ss_pred CCccEEECCCCcccccC----HhHhccccCCcEEECCCCcCCccCH----HHccCCcCCCEEECCCCccCccChhhh---
Confidence 46889999988886432 2245568889999999988765432 235678889999999988876433223
Q ss_pred HhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHH
Q 007838 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (588)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (588)
..+++|++|++++|.++.. ....+..+++|++|++++|.++... ++..+..+++|++|++++|+++.....
T Consensus 97 --~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 97 --SGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp --TTCTTCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred --cCCccccEEECCCCCcccc----CchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHH
Confidence 4667899999988887764 1123567888999999998887521 334567778899999999988764333
Q ss_pred HHHHHHhcCCCcC-EEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCC
Q 007838 434 AIARVLKDNSVIT-SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (588)
Q Consensus 434 ~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 512 (588)
.+... ...+.|. .|++++|.++......+ ...+|++|++++|+++......+ ..+++|++|+|++|++.
T Consensus 168 ~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVL-HQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKSVPDGIF----DRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHH-HTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSCCCTTTT----TTCCSCCEEECCSSCBC
T ss_pred Hhhhh-hhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceeecCHhHh----cccccccEEEccCCccc
Confidence 33332 2234443 78899988875432211 22478899999998887654433 34488999999999888
Q ss_pred cc
Q 007838 513 DE 514 (588)
Q Consensus 513 ~~ 514 (588)
..
T Consensus 238 c~ 239 (276)
T 2z62_A 238 CS 239 (276)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.4e-18 Score=169.58 Aligned_cols=220 Identities=15% Similarity=0.102 Sum_probs=166.2
Q ss_pred cceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHH
Q 007838 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383 (588)
Q Consensus 304 L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (588)
+..+++..+.+.+... +..+++|+.|++++|.+.+.. .+ ..+++|++|++++|.+++. ..+
T Consensus 21 l~~l~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~~~--~l-----~~l~~L~~L~l~~n~l~~~------~~l 81 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVT------QNELNSIDQIIANNSDIKSVQ--GI-----QYLPNVRYLALGGNKLHDI------SAL 81 (272)
T ss_dssp HHHHHHTCSCTTSEEC------HHHHTTCCEEECTTSCCCCCT--TG-----GGCTTCCEEECTTSCCCCC------GGG
T ss_pred HHHHHhcCcccccccc------cccccceeeeeeCCCCccccc--cc-----ccCCCCcEEECCCCCCCCc------hhh
Confidence 3344555554443321 235679999999999887532 12 3578999999999999873 256
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHH
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (588)
..+++|++|++++|.++.. ....+..+++|++|++++|+++.. ....+..+++|++|++++|.++....
T Consensus 82 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~--- 150 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSL----PNGVFDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLPK--- 150 (272)
T ss_dssp TTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT---
T ss_pred cCCCCCCEEECCCCccCcc----ChhHhcCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCccCH---
Confidence 8899999999999998864 233456789999999999998854 22335667999999999999886432
Q ss_pred HHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhc
Q 007838 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (588)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n 543 (588)
..+..+++|++|++++|+++......+. .+++|++|++++|++.+. .+..+..+++|++|+|++|
T Consensus 151 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 151 -GVFDKLTNLTELDLSYNQLQSLPEGVFD----KLTQLKDLRLYQNQLKSV----------PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -TTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCSCC----------CTTTTTTCTTCCEEECCSS
T ss_pred -HHhccCccCCEEECCCCCcCccCHHHhc----CCccCCEEECCCCcCCcc----------CHHHHhCCcCCCEEEccCC
Confidence 2345678999999999999876554443 449999999999999977 4566889999999999999
Q ss_pred cchhHHHHHHHHHhhhhccceeeccCCccccCccc
Q 007838 544 YLQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNII 578 (588)
Q Consensus 544 ~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~ 578 (588)
.+.+. + +.|+.|+++.|.++..-..
T Consensus 216 ~~~~~---------~-~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 216 PWDCT---------C-PGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CBCCC---------T-TTTHHHHHHHHHTGGGBBC
T ss_pred Ccccc---------C-cHHHHHHHHHHhCCCcccC
Confidence 98763 1 5688888888887765443
No 91
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.67 E-value=6.6e-16 Score=139.44 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=90.5
Q ss_pred HHHHHhcCCCCcEEEccCC-CCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCCh
Q 007838 379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (588)
+...+...+.|++|+|++| .|++.|+..++++++.+++|+.|+|++|.|++.+...++++|..++.|+.|+|++|.|++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4555556666777777664 666777777777776666777777777777777777777777766777777777777777
Q ss_pred HHHHHHHHHHhhCCCccEEEcccC---CCChhHHHHHHHHHhcCCcccEEEeecCCCC
Q 007838 458 DGAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNNTISILDLRANGLR 512 (588)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n---~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 512 (588)
.|...+++.++.++.|++|+|++| .+++.+...++++++.+++|++|+++.|.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 777777776666666777777543 5566666667777777777777777655444
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=8.3e-18 Score=163.87 Aligned_cols=159 Identities=21% Similarity=0.186 Sum_probs=78.7
Q ss_pred CCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHH
Q 007838 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (588)
Q Consensus 358 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 437 (588)
+++|++|++++|.++.. ....+..+++|++|++++|.++.. ....+..+++|++|++++|.++... ..
T Consensus 60 l~~L~~L~l~~n~l~~i----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~ 127 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTL----PAGIFKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSLP----PR 127 (270)
T ss_dssp CTTCCEEECCSSCCSCC----CTTTTSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCCC----TT
T ss_pred CCCCCEEECCCCccCee----ChhhhcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCeeC----HH
Confidence 34455555555444431 111123445555555555554432 1122334455555555555554321 11
Q ss_pred HHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccccc
Q 007838 438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCS 517 (588)
Q Consensus 438 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 517 (588)
.+..+++|+.|++++|.++.... ..+..+++|++|++++|+++......+.. +++|++|+|++|++.+.
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~~~--- 196 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLKRV--- 196 (270)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCCSCC---
T ss_pred HhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecCCcCcEeChhHhcc----CCCcCEEECCCCcCCcC---
Confidence 23344556666666665543321 11234456666666666665544333322 36677777777766654
Q ss_pred CCCCchhhhhhHhhhhcccchhhhhccch
Q 007838 518 GCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (588)
Q Consensus 518 ~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~ 546 (588)
.+..+..+++|+.|+|++|.+.
T Consensus 197 -------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 197 -------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCBC
T ss_pred -------CHHHhccccCCCEEEecCCCee
Confidence 2334556666777777776653
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.8e-18 Score=167.21 Aligned_cols=204 Identities=17% Similarity=0.163 Sum_probs=155.4
Q ss_pred CCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHH
Q 007838 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (588)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 410 (588)
..+.++++++.++.. ... -.++++.|++++|.++.. ....+..+++|++|++++|.++.. ....
T Consensus 17 ~~~~l~~~~~~l~~i-----p~~---~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~i----~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-----PSN---IPADTKKLDLQSNKLSSL----PSKAFHRLTKLRLLYLNDNKLQTL----PAGI 80 (270)
T ss_dssp TTTEEECTTSCCSSC-----CSC---CCTTCSEEECCSSCCSCC----CTTSSSSCTTCCEEECCSSCCSCC----CTTT
T ss_pred CCCEEEccCCCCCcc-----CCC---CCCCCCEEECcCCCCCee----CHHHhcCCCCCCEEECCCCccCee----Chhh
Confidence 567888888877652 111 124789999999988774 223567899999999999998763 2233
Q ss_pred HhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHH
Q 007838 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490 (588)
Q Consensus 411 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 490 (588)
+..+++|++|++++|.++... ...+..+++|++|++++|.++..... .+..+++|++|+|++|.++......
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hcCCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCcCCccCHhH
Confidence 466899999999999988542 23456679999999999988765332 3456789999999999998775544
Q ss_pred HHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCC
Q 007838 491 VADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFN 570 (588)
Q Consensus 491 l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N 570 (588)
+. .+++|++|+|++|.+.+. .+..+..+++|++|+|++|.+++. ....+..+ ++|+.|+|++|
T Consensus 153 ~~----~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l-~~L~~L~l~~N 215 (270)
T 2o6q_A 153 FD----KLTSLKELRLYNNQLKRV----------PEGAFDKLTELKTLKLDNNQLKRV--PEGAFDSL-EKLKMLQLQEN 215 (270)
T ss_dssp TT----TCTTCCEEECCSSCCSCC----------CTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTC-TTCCEEECCSS
T ss_pred cc----CCcccceeEecCCcCcEe----------ChhHhccCCCcCEEECCCCcCCcC--CHHHhccc-cCCCEEEecCC
Confidence 44 449999999999999977 445688999999999999999875 22334444 78999999999
Q ss_pred ccccC
Q 007838 571 EIRVS 575 (588)
Q Consensus 571 ~i~~~ 575 (588)
++...
T Consensus 216 ~~~c~ 220 (270)
T 2o6q_A 216 PWDCT 220 (270)
T ss_dssp CBCCS
T ss_pred CeeCC
Confidence 98654
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=2.2e-18 Score=169.53 Aligned_cols=212 Identities=16% Similarity=0.093 Sum_probs=160.7
Q ss_pred hhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHH
Q 007838 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (588)
Q Consensus 299 ~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (588)
.+++++++++++++.++.... .+ .++++.|++++|.++......+ ..+++|++|++++|.++...
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~-----~~--~~~l~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~--- 71 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPP-----DL--PKDTTILHLSENLLYTFSLATL-----MPYTRLTQLNLDRAELTKLQ--- 71 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCS-----CC--CTTCCEEECTTSCCSEEEGGGG-----TTCTTCCEEECTTSCCCEEE---
T ss_pred cccCCccEEECCCCCCCcCCC-----CC--CCCCCEEEcCCCcCCccCHHHh-----hcCCCCCEEECCCCccCccc---
Confidence 357889999999998875431 11 3689999999999976543333 46789999999999998742
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
. ...+++|++|++++|.++. ++..+..+++|++|++++|+++... ...+..+++|+.|+|++|.++..
T Consensus 72 --~-~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 72 --V-DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp --C-CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCC
T ss_pred --C-CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCcc
Confidence 1 2678899999999999875 4445667899999999999988542 23456679999999999988764
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccch
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFY 538 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L 538 (588)
.. ..+..+++|++|+|++|+++......+.. .++|++|+|++|++... |..+..+++|+.|
T Consensus 140 ~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~L~~L~L~~N~l~~i-----------p~~~~~~~~L~~l 200 (290)
T 1p9a_G 140 PP----GLLTPTPKLEKLSLANNNLTELPAGLLNG----LENLDTLLLQENSLYTI-----------PKGFFGSHLLPFA 200 (290)
T ss_dssp CT----TTTTTCTTCCEEECTTSCCSCCCTTTTTT----CTTCCEEECCSSCCCCC-----------CTTTTTTCCCSEE
T ss_pred Ch----hhcccccCCCEEECCCCcCCccCHHHhcC----cCCCCEEECCCCcCCcc-----------ChhhcccccCCeE
Confidence 32 23355689999999999998765544433 49999999999999855 7778888899999
Q ss_pred hhhhccchh---HHHHHHHHH
Q 007838 539 SLCINYLQG---AKCLAQSFK 556 (588)
Q Consensus 539 ~Ls~n~l~~---~~~l~~~~~ 556 (588)
+|++|.+.. ...+..+++
T Consensus 201 ~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 201 FLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp ECCSCCBCCSGGGHHHHHHHH
T ss_pred EeCCCCccCcCccHHHHHHHH
Confidence 999998753 333445554
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1e-17 Score=164.86 Aligned_cols=227 Identities=16% Similarity=0.131 Sum_probs=164.2
Q ss_pred hCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHH
Q 007838 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351 (588)
Q Consensus 272 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 351 (588)
+++++++++++++.++. ++..+ .+.++.|++++|.++.... ..+..+++|++|++++|.++.... .
T Consensus 8 ~l~~l~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~--~- 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-----LPPDL--PKDTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQV--D- 73 (290)
T ss_dssp CSTTCCEEECTTSCCSS-----CCSCC--CTTCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCEEEC--C-
T ss_pred ccCCccEEECCCCCCCc-----CCCCC--CCCCCEEEcCCCcCCccCH----HHhhcCCCCCEEECCCCccCcccC--C-
Confidence 45789999999998853 33222 3689999999999876543 346788999999999999876322 1
Q ss_pred HHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHH
Q 007838 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431 (588)
Q Consensus 352 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 431 (588)
..+++|++|++++|.++. ++..+..+++|++|++++|.++.. ....+..+++|++|+|++|+++...
T Consensus 74 ----~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 74 ----GTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp ----SCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred ----CCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCccc----CHHHHcCCCCCCEEECCCCCCCccC
Confidence 366799999999999885 555667889999999999998864 2245677899999999999988542
Q ss_pred HHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCC
Q 007838 432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (588)
Q Consensus 432 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l 511 (588)
...+..+++|+.|+|++|.++.... ..+..+++|++|+|++|+++..... +..+++|+.|+|++|.+
T Consensus 141 ----~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~ip~~-----~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 141 ----PGLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQENSLYTIPKG-----FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCCCSEEECCSCCB
T ss_pred ----hhhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCCCcCCccChh-----hcccccCCeEEeCCCCc
Confidence 2334566999999999998875422 2335568999999999999865322 22347899999999998
Q ss_pred CcccccCCCCchhhhhhHhhhhcccchhhhhc
Q 007838 512 RDEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (588)
Q Consensus 512 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n 543 (588)
.-. | .+..+...+..-+........++
T Consensus 208 ~C~----c-~~~~l~~wl~~~~~~~~~~~~~~ 234 (290)
T 1p9a_G 208 LCN----C-EILYFRRWLQDNAENVYVWKQGV 234 (290)
T ss_dssp CCS----G-GGHHHHHHHHHTGGGBCCCCTTC
T ss_pred cCc----C-ccHHHHHHHHhCcccceeecccc
Confidence 754 3 33334455554444333333333
No 96
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.65 E-value=1.7e-15 Score=136.74 Aligned_cols=124 Identities=12% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHH
Q 007838 359 GKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (588)
Q Consensus 359 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 437 (588)
+.|++|+|+++ .|.+.|+..++..++....|++|+|++|.++|.|...++++|+.+++|++|+|++|.|++.|...+++
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34444444442 44444444444444444445555555555555555555555555555555555555555555555555
Q ss_pred HHhcCCCcCEEECcCC---CCChHHHHHHHHHHhhCCCccEEEcccCC
Q 007838 438 VLKDNSVITSLDLAYN---PIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (588)
Q Consensus 438 ~l~~~~~L~~L~Ls~n---~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (588)
+|..++.|++|+|++| .|++.+...+++.++.++.|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 5555545555555432 34555555555555555555555554443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.3e-16 Score=156.98 Aligned_cols=171 Identities=22% Similarity=0.204 Sum_probs=123.6
Q ss_pred cCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHH
Q 007838 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (588)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 407 (588)
.+++|++|++++|.+.+.. .+ ..+++|++|++++|.+++. .. +..+++|++|++++|.+++.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~-----~~l~~L~~L~L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~----- 105 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GI-----QYLPNVTKLFLNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDL----- 105 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TG-----GGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCG-----
T ss_pred hcCcccEEEccCCCcccCh--hH-----hcCCCCCEEEccCCccCCC-----cc-cccCCCCCEEECCCCcCCCC-----
Confidence 3567888888888776531 12 3567888888888888774 22 67788888888888888763
Q ss_pred HHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhH
Q 007838 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (588)
Q Consensus 408 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (588)
..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|+++...
T Consensus 106 -~~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 106 -SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCG
T ss_pred -hhhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccch
Confidence 2366778888888888888753 2455668888888888887763 24566678888888888877764
Q ss_pred HHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 488 AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
. +..+++|++|++++|.+.+. +.+..+++|+.|++++|.++.
T Consensus 173 ~------l~~l~~L~~L~L~~N~i~~l------------~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P------LAGLTKLQNLYLSKNHISDL------------RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G------GTTCTTCCEEECCSSCCCBC------------GGGTTCTTCSEEEEEEEEEEC
T ss_pred h------hcCCCccCEEECCCCcCCCC------------hhhccCCCCCEEECcCCcccC
Confidence 3 34458888888888888765 347778888888888887764
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=4.3e-16 Score=153.31 Aligned_cols=172 Identities=22% Similarity=0.235 Sum_probs=137.0
Q ss_pred hCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHH
Q 007838 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (588)
Q Consensus 300 ~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (588)
.+++|+.|++++|.++... .+..+++|++|++++|.+.+... + ..+++|++|++++|.+++.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~------~~~~l~~L~~L~L~~n~l~~~~~--l-----~~l~~L~~L~l~~n~l~~~----- 105 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--L-----ANLKNLGWLFLDENKVKDL----- 105 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--G-----TTCTTCCEEECCSSCCCCG-----
T ss_pred hcCcccEEEccCCCcccCh------hHhcCCCCCEEEccCCccCCCcc--c-----ccCCCCCEEECCCCcCCCC-----
Confidence 4678999999999887542 36778999999999998876432 2 4678899999999998873
Q ss_pred HHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHH
Q 007838 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (588)
Q Consensus 380 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (588)
+ .+..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++..
T Consensus 106 ~-~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCG
T ss_pred h-hhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccch
Confidence 2 368889999999999988873 3467789999999999998864 35667799999999999888753
Q ss_pred HHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
. +..+++|++|++++|.++... .+..+++|+.|++++|++.+.
T Consensus 173 ~------l~~l~~L~~L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEEEEEEEEECC
T ss_pred h------hcCCCccCEEECCCCcCCCCh------hhccCCCCCEEECcCCcccCC
Confidence 2 567789999999999998763 145569999999999988766
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=2e-17 Score=159.32 Aligned_cols=205 Identities=19% Similarity=0.202 Sum_probs=148.7
Q ss_pred CCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHH
Q 007838 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (588)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 409 (588)
...++++++++.+... ... -.+.++.|++++|.++.. .+..+..+++|++|+|++|.++.. ...
T Consensus 14 ~~~~~l~~~~~~l~~~-----p~~---~~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-----PSG---IPADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAG 77 (251)
T ss_dssp GGGTEEECTTCCCSSC-----CSC---CCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTT
T ss_pred CCCeEEecCCCCcccc-----CCC---CCCCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHh
Confidence 4678999999988652 211 125799999999998875 334567899999999999999875 334
Q ss_pred HHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHH
Q 007838 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (588)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (588)
.+..+++|++|+|++|+++... ...+..+++|++|+|++|.|+.... ..+..+++|++|+|++|+++.....
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred HhccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCCcCCccCHH
Confidence 4677899999999999998542 2345567999999999999885432 2235568999999999999887654
Q ss_pred HHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH----HHHHHHHHhhhhcccee
Q 007838 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA----KCLAQSFKVVNEALTSI 565 (588)
Q Consensus 490 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~l~~~~~~~~~~L~~L 565 (588)
.+.. +++|++|+|++|++.+. .+..+..+++|+.|+|++|.+++. ..+..++.. ...+..
T Consensus 150 ~~~~----l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~--~~~~~~ 213 (251)
T 3m19_A 150 AFDK----LTNLQTLSLSTNQLQSV----------PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE--NSNKVK 213 (251)
T ss_dssp TTTT----CTTCCEEECCSSCCSCC----------CTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH--SGGGBC
T ss_pred HcCc----CcCCCEEECCCCcCCcc----------CHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh--ccccee
Confidence 4444 49999999999999977 456788999999999999998753 234444432 234445
Q ss_pred eccCCcccc
Q 007838 566 DLAFNEIRV 574 (588)
Q Consensus 566 ~ls~N~i~~ 574 (588)
+..++.+..
T Consensus 214 ~~~~~~~~~ 222 (251)
T 3m19_A 214 DGTGQNLHE 222 (251)
T ss_dssp C-------C
T ss_pred eccCccccc
Confidence 555655443
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=8.8e-17 Score=154.76 Aligned_cols=181 Identities=16% Similarity=0.177 Sum_probs=138.3
Q ss_pred CCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHH
Q 007838 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (588)
Q Consensus 302 ~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (588)
...++++++++.++.... .+ .+.+++|++++|.+.......+ ..+++|++|++++|.++.. .+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~-----~~--~~~l~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-----GI--PADTEKLDLQSTGLATLSDATF-----RGLTKLTWLNLDYNQLQTL----SAG 77 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-----CC--CTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECTTSCCCCC----CTT
T ss_pred CCCeEEecCCCCccccCC-----CC--CCCCCEEEccCCCcCccCHhHh-----cCcccCCEEECCCCcCCcc----CHh
Confidence 467899999998765431 12 3589999999999876543333 4678999999999998875 344
Q ss_pred HHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHH
Q 007838 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461 (588)
Q Consensus 382 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 461 (588)
.+..+++|++|+|++|.++.. ....+..+++|++|+|++|.++... ...+..+++|++|+|++|.|+....
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~- 148 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLP----SGVFDRLTKLKELRLNTNQLQSIPA- 148 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred HhccCCcCCEEECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcC----hhHhccCCcccEEECcCCcCCccCH-
Confidence 567889999999999998864 2344567899999999999988432 2234567999999999999886432
Q ss_pred HHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 462 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
..+..+++|++|+|++|+++......+.. +++|++|+|++|.+...
T Consensus 149 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 ---GAFDKLTNLQTLSLSTNQLQSVPHGAFDR----LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---TTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSCCBCTT
T ss_pred ---HHcCcCcCCCEEECCCCcCCccCHHHHhC----CCCCCEEEeeCCceeCC
Confidence 23456689999999999998776544444 49999999999999755
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=3.4e-16 Score=144.66 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=83.9
Q ss_pred CCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHH
Q 007838 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 466 (588)
Q Consensus 387 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (588)
++|++|++++|.+++ +. .+..+++|++|++++|.++.. ..+..+++|++|++++|.+++..+..
T Consensus 44 ~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~~~---- 107 (197)
T 4ezg_A 44 NSLTYITLANINVTD-----LT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPN---- 107 (197)
T ss_dssp HTCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGSCC----
T ss_pred CCccEEeccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccChh----
Confidence 355555555555553 11 244455566666666554432 13444566666666666655432222
Q ss_pred HhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCC-CCcccccCCCCchhhhhhHhhhhcccchhhhhccc
Q 007838 467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG-LRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYL 545 (588)
Q Consensus 467 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l 545 (588)
+..+++|++|++++|+++...+..+..+ ++|++|++++|. +.+. +.+..+++|++|++++|.+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l----~~L~~L~L~~n~~i~~~------------~~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTL----PKVNSIDLSYNGAITDI------------MPLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTC----SSCCEEECCSCTBCCCC------------GGGGGCSSCCEEECTTBCC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhC----CCCCEEEccCCCCcccc------------HhhcCCCCCCEEECCCCCC
Confidence 2344666777777776666555444433 777777777776 4433 2566777777777777777
Q ss_pred hhHHHHHHHHHhhhhccceeeccCCcccc
Q 007838 546 QGAKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 546 ~~~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
++.. .+..+ ++|+.|++++|+|++
T Consensus 172 ~~~~----~l~~l-~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 172 HDYR----GIEDF-PKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCT----TGGGC-SSCCEEEECBC----
T ss_pred cChH----HhccC-CCCCEEEeeCcccCC
Confidence 6632 23334 667777777777754
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=1.5e-15 Score=163.81 Aligned_cols=171 Identities=23% Similarity=0.207 Sum_probs=128.6
Q ss_pred cCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHH
Q 007838 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (588)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 407 (588)
.++.|+.|++++|.+.... .+ ..+++|+.|+|++|.+++. +. +..+++|+.|+|++|.+++.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l-----~~l~~L~~L~Ls~N~l~~~-----~~-l~~l~~L~~L~Ls~N~l~~l----- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GI-----QYLPNVTKLFLNGNKLTDI-----KP-LTNLKNLGWLFLDENKIKDL----- 102 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TG-----GGCTTCCEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC-----
T ss_pred cCCCCCEEECcCCCCCCCh--HH-----ccCCCCCEEEeeCCCCCCC-----hh-hccCCCCCEEECcCCCCCCC-----
Confidence 4678888999988876532 12 3567899999999888874 22 67888899999999888763
Q ss_pred HHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhH
Q 007838 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (588)
Q Consensus 408 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (588)
..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.++...
T Consensus 103 -~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 103 -SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp -TTSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCG
T ss_pred -hhhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCch
Confidence 2466778888888888888753 2356678888888888888763 34566788888888888887764
Q ss_pred HHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 488 AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
+ +..+++|++|+|++|+|.+. +.+..+++|+.|+|++|.+++
T Consensus 170 ~------l~~l~~L~~L~Ls~N~i~~l------------~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P------LAGLTKLQNLYLSKNHISDL------------RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G------GTTCTTCCEEECCSSCCCBC------------GGGTTCTTCSEEECCSEEEEC
T ss_pred h------hccCCCCCEEECcCCCCCCC------------hHHccCCCCCEEEccCCcCcC
Confidence 4 34458888888888888765 357778888888888888765
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.6e-16 Score=153.89 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=91.6
Q ss_pred CCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHH
Q 007838 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL 411 (588)
Q Consensus 332 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 411 (588)
+..++++++.+.+.. .+ ..+++|+.|++++|.+++. + .+..+++|++|++++|.+++.. . +
T Consensus 21 l~~l~l~~~~i~~~~--~~-----~~l~~L~~L~l~~n~i~~l-----~-~l~~l~~L~~L~L~~N~i~~~~-----~-l 81 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQ-----KELSGVQNFNGDNSNIQSL-----A-GMQFFTNLKELHLSHNQISDLS-----P-L 81 (263)
T ss_dssp HHHHHHTCSCTTSEE--CH-----HHHTTCSEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-G
T ss_pred HHHHHhcCCCccccc--ch-----hhcCcCcEEECcCCCcccc-----h-HHhhCCCCCEEECCCCccCCCh-----h-h
Confidence 445556666655432 11 1224566777776666652 2 3456666777777666666531 1 4
Q ss_pred hhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHH
Q 007838 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491 (588)
Q Consensus 412 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 491 (588)
..+++|++|++++|++++.. . +.. ++|+.|++++|.+++. ..+..+++|++|++++|++++..
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~-----~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~---- 144 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLN-----G-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV---- 144 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCT-----T-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG----
T ss_pred ccCCCCCEEECCCCccCCcC-----c-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh----
Confidence 55666666666666665421 1 111 5666666666666542 12344566666666666665542
Q ss_pred HHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 492 ADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 492 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
.+..+++|++|++++|++.+. ..+..+++|+.|++++|.+++
T Consensus 145 --~l~~l~~L~~L~L~~N~i~~~------------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 145 --MLGFLSKLEVLDLHGNEITNT------------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --GGGGCTTCCEEECTTSCCCBC------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHccCCCCCEEECCCCcCcch------------HHhccCCCCCEEeCCCCcccC
Confidence 133346666666666666544 345556666666666666554
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2e-15 Score=139.52 Aligned_cols=150 Identities=12% Similarity=0.169 Sum_probs=74.9
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (588)
+|+.|++++|.+++ ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++... ..+
T Consensus 45 ~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~----~~l 108 (197)
T 4ezg_A 45 SLTYITLANINVTD-----LT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNL 108 (197)
T ss_dssp TCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGS----CCC
T ss_pred CccEEeccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccC----hhh
Confidence 34555555554443 22 234455555555555544432 123445555555555555554321 123
Q ss_pred hcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCC-CChhHHHHHHHHHhcCCcccEEEeecCCCCcccccC
Q 007838 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRANGLRDEVCSG 518 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 518 (588)
..+++|++|++++|.+++..+.. +..+++|++|++++|. ++... .+..+++|++|++++|++.+.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~~~---- 174 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVHDY---- 174 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCCCC----
T ss_pred cCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCcCh----
Confidence 34455666666666555543322 2344566666666665 55442 133346666666666666654
Q ss_pred CCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 519 CNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 519 ~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
..+..+++|++|++++|+|.+
T Consensus 175 --------~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 --------RGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --------TTGGGCSSCCEEEECBC----
T ss_pred --------HHhccCCCCCEEEeeCcccCC
Confidence 255666666666666666543
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=7.1e-17 Score=154.20 Aligned_cols=196 Identities=13% Similarity=0.041 Sum_probs=110.7
Q ss_pred CCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCC-CChhhHHHHHHHHhcCCCCcEEEccC-CCCChHHHHHHH
Q 007838 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGAEKIA 408 (588)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~ 408 (588)
+|++|++++|.+.......+ ..+++|++|++++|. ++.. ....+..+++|++|++++ |.++.. ..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~-----~~l~~L~~L~l~~n~~l~~i----~~~~f~~l~~L~~L~l~~~n~l~~i----~~ 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAF-----SNLPNISRIYVSIDVTLQQL----ESHSFYNLSKVTHIEIRNTRNLTYI----DP 98 (239)
T ss_dssp TCCEEEEESCCCSEECTTTT-----TTCTTCCEEEEECCSSCCEE----CTTTEESCTTCCEEEEEEETTCCEE----CT
T ss_pred cccEEEEeCCcceEECHHHc-----cCCCCCcEEeCCCCCCccee----CHhHcCCCcCCcEEECCCCCCeeEc----CH
Confidence 45566666665544221112 244556666666664 5442 112334566666666666 666542 11
Q ss_pred HHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcC---EEECcCC-CCChHHHHHHHHHHhhCCCcc-EEEcccCCC
Q 007838 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT---SLDLAYN-PIGADGAKALSEVLKFHGNIN-TLKLGWCQI 483 (588)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~---~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~-~L~L~~n~i 483 (588)
..+..+++|++|++++|.++.. +. +..+++|+ .|++++| .++..... .+..+++|+ +|++++|++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~l-----p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~----~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMF-----PD-LTKVYSTDIFFILEITDNPYMTSIPVN----AFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSC-----CC-CTTCCBCCSEEEEEEESCTTCCEECTT----TTTTTBSSEEEEECCSCCC
T ss_pred HHhCCCCCCCEEeCCCCCCccc-----cc-cccccccccccEEECCCCcchhhcCcc----cccchhcceeEEEcCCCCC
Confidence 2344556666666666666531 11 34445555 7777777 66543221 223456777 777777777
Q ss_pred ChhHHHHHHHHHhcCCcccEEEeecCC-CCcccccCCCCchhhhhhHhhh-hcccchhhhhccchhHHHHHHHHHhhhhc
Q 007838 484 GASGAEFVADMLRYNNTISILDLRANG-LRDEVCSGCNGLSFFHSAIYSL-KHMLFYSLCINYLQGAKCLAQSFKVVNEA 561 (588)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~ 561 (588)
+......+ .. ++|++|++++|+ +.+. .+..+.++ ++|+.|++++|++++... .. . +.
T Consensus 169 ~~i~~~~~----~~-~~L~~L~L~~n~~l~~i----------~~~~~~~l~~~L~~L~l~~N~l~~l~~--~~---~-~~ 227 (239)
T 2xwt_C 169 TSVQGYAF----NG-TKLDAVYLNKNKYLTVI----------DKDAFGGVYSGPSLLDVSQTSVTALPS--KG---L-EH 227 (239)
T ss_dssp CEECTTTT----TT-CEEEEEECTTCTTCCEE----------CTTTTTTCSBCCSEEECTTCCCCCCCC--TT---C-TT
T ss_pred cccCHhhc----CC-CCCCEEEcCCCCCcccC----------CHHHhhccccCCcEEECCCCccccCCh--hH---h-cc
Confidence 65433222 12 678888888884 7755 34556777 888888888888776321 11 2 66
Q ss_pred cceeeccCC
Q 007838 562 LTSIDLAFN 570 (588)
Q Consensus 562 L~~L~ls~N 570 (588)
|+.|+++++
T Consensus 228 L~~L~l~~~ 236 (239)
T 2xwt_C 228 LKELIARNT 236 (239)
T ss_dssp CSEEECTTC
T ss_pred CceeeccCc
Confidence 888888765
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=3.5e-15 Score=160.98 Aligned_cols=174 Identities=22% Similarity=0.226 Sum_probs=143.7
Q ss_pred hhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHH
Q 007838 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (588)
Q Consensus 299 ~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (588)
..+++|+.|++++|.+.... .+..+++|+.|+|++|.+.+... + ..+++|+.|+|++|.+.+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--l-----~~l~~L~~L~Ls~N~l~~l---- 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--L-----TNLKNLGWLFLDENKIKDL---- 102 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG--G-----GGCTTCCEEECCSSCCCCC----
T ss_pred hcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh--h-----ccCCCCCEEECcCCCCCCC----
Confidence 35688999999999887643 36789999999999999876432 2 4678999999999999873
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChH
Q 007838 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (588)
Q Consensus 379 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (588)
+ .+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.|.+.
T Consensus 103 -~-~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 103 -S-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp -T-TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCC
T ss_pred -h-hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCc
Confidence 2 568899999999999999873 3467889999999999999864 4577889999999999999875
Q ss_pred HHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccc
Q 007838 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEV 515 (588)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 515 (588)
.. +..+++|+.|+|++|+|+... .+..+++|+.|+|++|++.+..
T Consensus 169 ~~------l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 VP------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GG------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSEEEECCC
T ss_pred hh------hccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCCcCcCCc
Confidence 33 567899999999999998862 2555699999999999998763
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=1.9e-16 Score=151.24 Aligned_cols=190 Identities=11% Similarity=0.080 Sum_probs=142.7
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCC-CChHHHHHHHHHHhhCCCccEEEeeC-CcCCHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGG-NNIHSKGASAIAR 437 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~ 437 (588)
+|++|++++|.++.. ....+..+++|++|++++|. ++.. ....+..+++|++|++++ |.++... ..
T Consensus 32 ~l~~L~l~~n~l~~i----~~~~~~~l~~L~~L~l~~n~~l~~i----~~~~f~~l~~L~~L~l~~~n~l~~i~----~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLRTI----PSHAFSNLPNISRIYVSIDVTLQQL----ESHSFYNLSKVTHIEIRNTRNLTYID----PD 99 (239)
T ss_dssp TCCEEEEESCCCSEE----CTTTTTTCTTCCEEEEECCSSCCEE----CTTTEESCTTCCEEEEEEETTCCEEC----TT
T ss_pred cccEEEEeCCcceEE----CHHHccCCCCCcEEeCCCCCCccee----CHhHcCCCcCCcEEECCCCCCeeEcC----HH
Confidence 799999999999874 22356789999999999997 8764 223466789999999998 8887542 23
Q ss_pred HHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCcc---EEEcccC-CCChhHHHHHHHHHhcCCccc-EEEeecCCCC
Q 007838 438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN---TLKLGWC-QIGASGAEFVADMLRYNNTIS-ILDLRANGLR 512 (588)
Q Consensus 438 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~---~L~L~~n-~i~~~~~~~l~~~l~~~~~L~-~L~L~~n~l~ 512 (588)
.+..+++|++|++++|.++... . +..+++|+ +|++++| +++......+..+ ++|+ +|++++|++.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp-----~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l----~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFP-----D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL----CNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCC-----C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT----BSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCcccc-----c-cccccccccccEEECCCCcchhhcCcccccch----hcceeEEEcCCCCCc
Confidence 4566799999999999887632 2 45567777 9999999 8988765555444 9999 9999999998
Q ss_pred cccccCCCCchhhhhhHhhhhcccchhhhhcc-chhHHHHHHHHHhhhhccceeeccCCccccCccccccccc
Q 007838 513 DEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY-LQGAKCLAQSFKVVNEALTSIDLAFNEIRVSNIIFFPFFS 584 (588)
Q Consensus 513 ~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~~~~~l~~~~ 584 (588)
.. +......++|++|+|++|. +++.. ...+..+.++|+.||+++|+|+......++.+.
T Consensus 170 ~i-----------~~~~~~~~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 170 SV-----------QGYAFNGTKLDAVYLNKNKYLTVID--KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp EE-----------CTTTTTTCEEEEEECTTCTTCCEEC--TTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred cc-----------CHhhcCCCCCCEEEcCCCCCcccCC--HHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence 44 3333333899999999995 87642 233332225799999999999887666555443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=6e-15 Score=157.42 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=33.7
Q ss_pred CCccEEEcccCCCChhHHHHHH-HHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 471 GNINTLKLGWCQIGASGAEFVA-DMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
++|++|+|++|+|+.... +. .+....+.|+.|+|++|+|+.. |..+..+++|+.|+|++|.+++.
T Consensus 180 ~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~l-----------p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHI-----------PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCC-----------CGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceec-----------CHHHhcCCCCCEEEeeCCcCCCc
Confidence 455555555555543322 11 0111123337777777766643 55566677777777777777664
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2.1e-15 Score=160.91 Aligned_cols=193 Identities=14% Similarity=0.181 Sum_probs=130.9
Q ss_pred CCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHH
Q 007838 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (588)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 409 (588)
.+|+.|++++|.+++ +... -.++|+.|++++|.++. ++ ..+++|++|++++|.++. ++.
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~---l~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~~-----ip~ 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDN---LPPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLST-----LPE 117 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSC---CCTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC
T ss_pred CCccEEEeCCCCCCc-----cCHh---HcCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCCC-----cch
Confidence 367777777777654 1111 12468888888887775 33 456788888888888776 222
Q ss_pred HHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHH
Q 007838 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (588)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (588)
+.. +|++|+|++|+++.. +. .+++|+.|++++|.|+.... .+++|++|+|++|+++....
T Consensus 118 -l~~--~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 118 -LPA--SLKHLDVDNNQLTML-----PE---LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp -CCT--TCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCCC-
T ss_pred -hhc--CCCEEECCCCcCCCC-----CC---cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCCcch-
Confidence 322 888888888888752 22 45889999999998875321 34789999999999887543
Q ss_pred HHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccC
Q 007838 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF 569 (588)
Q Consensus 490 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~ 569 (588)
+. ++|++|+|++|+|+.. |. +.. .-+...+.|+.|+|++|+|+. ++..+..+ ++|+.|+|++
T Consensus 178 -l~------~~L~~L~Ls~N~L~~l-p~-~~~-----~L~~~~~~L~~L~Ls~N~l~~---lp~~l~~l-~~L~~L~L~~ 239 (571)
T 3cvr_A 178 -LP------ESLEALDVSTNLLESL-PA-VPV-----RNHHSEETEIFFRCRENRITH---IPENILSL-DPTCTIILED 239 (571)
T ss_dssp -CC------TTCCEEECCSSCCSSC-CC-CC-------------CCEEEECCSSCCCC---CCGGGGGS-CTTEEEECCS
T ss_pred -hh------CCCCEEECcCCCCCch-hh-HHH-----hhhcccccceEEecCCCccee---cCHHHhcC-CCCCEEEeeC
Confidence 21 8999999999999944 21 110 111223344999999999986 44444445 8999999999
Q ss_pred CccccCcccccc
Q 007838 570 NEIRVSNIIFFP 581 (588)
Q Consensus 570 N~i~~~~~~~l~ 581 (588)
|+|+......+.
T Consensus 240 N~l~~~~p~~l~ 251 (571)
T 3cvr_A 240 NPLSSRIRESLS 251 (571)
T ss_dssp SSCCHHHHHHHH
T ss_pred CcCCCcCHHHHH
Confidence 999876554433
No 110
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.44 E-value=1.4e-13 Score=138.53 Aligned_cols=169 Identities=10% Similarity=0.099 Sum_probs=109.9
Q ss_pred HhhcCCCCCEEEccCCC-CChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC---CCC
Q 007838 325 GLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN---DIG 400 (588)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n---~l~ 400 (588)
.+..+|+|+.|+|+++. +.-. .+ ..++|++|+|..|.++..++..+. ...+++|++|+|+.+ ...
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~---~~------~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIG---KK------PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCC---SC------BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTC
T ss_pred HHhcCCCCcEEEEeCCCCceec---cc------cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEecccccccc
Confidence 34456677777776651 2110 01 245677777777777766554442 135777777777531 112
Q ss_pred hHHHHHHHHHHh--hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEc
Q 007838 401 DEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (588)
Q Consensus 401 ~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (588)
+.++..+...+. .+++|++|+|.+|.+++.+...++.. ..+++|+.|+|++|.+++.++..+...++.+++|+.|+|
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 211222222232 36788888888888887766666553 345788888888888888888888777677788888888
Q ss_pred ccCCCChhHHHHHHHHHhcCCcccEEEeecCC
Q 007838 479 GWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (588)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 510 (588)
++|.|++.+...+...+ ..++++++++
T Consensus 315 ~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred CCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 88888888888887752 4668888877
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=1.4e-14 Score=140.11 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=99.1
Q ss_pred CcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHH
Q 007838 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (588)
Q Consensus 303 ~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (588)
++..++++++.+++.. .+..+++|++|++++|.+.+.. .+ ..+++|+.|++++|.+++. +.
T Consensus 20 ~l~~l~l~~~~i~~~~------~~~~l~~L~~L~l~~n~i~~l~--~l-----~~l~~L~~L~L~~N~i~~~-----~~- 80 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQSLA--GM-----QFFTNLKELHLSHNQISDL-----SP- 80 (263)
T ss_dssp HHHHHHHTCSCTTSEE------CHHHHTTCSEEECTTSCCCCCT--TG-----GGCTTCCEEECCSSCCCCC-----GG-
T ss_pred HHHHHHhcCCCccccc------chhhcCcCcEEECcCCCcccch--HH-----hhCCCCCEEECCCCccCCC-----hh-
Confidence 3444455555544332 1224456666666666655421 11 2445666666666666653 22
Q ss_pred HhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHH
Q 007838 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (588)
Q Consensus 383 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (588)
+..+++|++|++++|.+++. .. +.. ++|++|++++|++++. ..+..+++|+.|++++|.|++..
T Consensus 81 l~~l~~L~~L~L~~N~l~~l-----~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~--- 144 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNL-----NG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV--- 144 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCC-----TT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG---
T ss_pred hccCCCCCEEECCCCccCCc-----Cc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh---
Confidence 55666677777777666552 11 122 5677777777776643 13555677777777777776541
Q ss_pred HHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
.+..+++|++|++++|++++. ..+..+++|+.|++++|.+.+.
T Consensus 145 ---~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 ---MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred ---HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence 345567777777777777765 2244457888888888877655
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=4e-15 Score=138.73 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=119.9
Q ss_pred CEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHh
Q 007838 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412 (588)
Q Consensus 333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 412 (588)
+.++.+++.+.... . ...++|++|++++|.++.. ....+..+++|++|++++|.++.. ....+.
T Consensus 10 ~~v~c~~~~l~~~p-----~---~~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~ 73 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-----T---GIPAQTTYLDLETNSLKSL----PNGVFDELTSLTQLYLGGNKLQSL----PNGVFN 73 (208)
T ss_dssp TEEECCSSCCSSCC-----S---CCCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTT
T ss_pred CEEEecCCCccCCC-----C---CCCCCCcEEEcCCCccCcC----ChhhhcccccCcEEECCCCccCcc----ChhhcC
Confidence 56777777665421 1 1235789999999988764 223456788899999999888753 223346
Q ss_pred hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHH
Q 007838 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (588)
Q Consensus 413 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (588)
.+++|++|+|++|+++... ...+..+++|++|++++|.++.... ..+..+++|++|++++|+++......+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~~- 144 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLP----NGVFDKLTQLKELALNTNQLQSLPD----GVFDKLTQLKDLRLYQNQLKSVPDGVF- 144 (208)
T ss_dssp TCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTTT-
T ss_pred CCCCcCEEECCCCcCCccC----HhHhcCccCCCEEEcCCCcCcccCH----hHhccCCcCCEEECCCCccceeCHHHh-
Confidence 6788999999998887432 2234566889999998888775422 223556788888888888876554333
Q ss_pred HHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 493 DMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 493 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
..+++|++|++++|.+... ++.|++|+++.|+++|.
T Consensus 145 ---~~l~~L~~L~l~~N~~~~~-----------------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 145 ---DRLTSLQYIWLHDNPWDCT-----------------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ---TTCTTCCEEECCSCCBCCC-----------------TTTTHHHHHHHHHCTTT
T ss_pred ---ccCCCccEEEecCCCeecC-----------------CCCHHHHHHHHHhCCce
Confidence 3348888888888887755 56788888888888875
No 113
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.42 E-value=3.4e-13 Score=135.75 Aligned_cols=209 Identities=13% Similarity=0.169 Sum_probs=95.6
Q ss_pred CccEEEccCCCCC-h---HHHHHHHHHHhhCCCCCEEEecCCCCChh-----HHHHHHHHHhhCCCccEEEeeccC-CCh
Q 007838 219 ALKTLNLSGNPIG-D---EGVKCLCDILVDNAGVERLQLSSVDLRDE-----GAKAIAELLKNNSILRVLELNNNM-IDY 288 (588)
Q Consensus 219 ~L~~L~Ls~n~i~-~---~~~~~l~~~l~~~~~L~~L~L~~~~l~~~-----~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 288 (588)
.++.|.+...... + .....+...+..+++|+.|.+......+. ....+...+..+|.|+.|+|++|. +..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 5778888765433 1 22334444445567888888865432110 001233445555666666666551 110
Q ss_pred hhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCC--C-CChhHHHHHHHHHhcCCCCceEEE
Q 007838 289 SGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN--S-IGDEGIRALMSGLSSRKGKLAVLD 365 (588)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n--~-l~~~~~~~l~~~l~~~~~~L~~L~ 365 (588)
+. + .+++|++|++..|.++......+. ...+|+|++|+|+.+ . ..+.++..+...+..
T Consensus 188 ------~~-~-~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~--------- 248 (362)
T 2ra8_A 188 ------GK-K-PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK--------- 248 (362)
T ss_dssp ------CS-C-BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT---------
T ss_pred ------cc-c-cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHHHhc---------
Confidence 00 1 134555555555554444333322 113455555554321 0 111111111111110
Q ss_pred ccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCc
Q 007838 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (588)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 445 (588)
..+++|++|+|.+|.+++.+...+..+ ..+++|++|+|+.|.+++.+...+...+..+++|
T Consensus 249 ------------------~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 249 ------------------DRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp ------------------TTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTC
T ss_pred ------------------CCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcc
Confidence 124555555555555555443333321 1234555555555555555555555444445555
Q ss_pred CEEECcCCCCChHHHHHHHH
Q 007838 446 TSLDLAYNPIGADGAKALSE 465 (588)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~ 465 (588)
+.|++++|.|++.++..+..
T Consensus 310 ~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 310 KFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp SEEECCSBBCCHHHHHHHHH
T ss_pred eEEECCCCcCCHHHHHHHHH
Confidence 55555555555555555544
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.9e-14 Score=134.17 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=111.1
Q ss_pred ceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHh
Q 007838 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (588)
Q Consensus 305 ~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (588)
+.++++++.++.... .-.++|++|++++|.+.......+ ..+++|++|++++|.++.. ....+.
T Consensus 10 ~~v~c~~~~l~~~p~-------~~~~~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~ 73 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-------GIPAQTTYLDLETNSLKSLPNGVF-----DELTSLTQLYLGGNKLQSL----PNGVFN 73 (208)
T ss_dssp TEEECCSSCCSSCCS-------CCCTTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSSCCCCC----CTTTTT
T ss_pred CEEEecCCCccCCCC-------CCCCCCcEEEcCCCccCcCChhhh-----cccccCcEEECCCCccCcc----ChhhcC
Confidence 455555555443221 124578888888887764322112 3567788888888877753 223346
Q ss_pred cCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHH
Q 007838 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (588)
Q Consensus 385 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (588)
.+++|++|++++|.++.. ....+..+++|++|++++|.++... ...+..+++|+.|++++|.++....
T Consensus 74 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~---- 141 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSL----PNGVFDKLTQLKELALNTNQLQSLP----DGVFDKLTQLKDLRLYQNQLKSVPD---- 141 (208)
T ss_dssp TCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCCT----
T ss_pred CCCCcCEEECCCCcCCcc----CHhHhcCccCCCEEEcCCCcCcccC----HhHhccCCcCCEEECCCCccceeCH----
Confidence 678888888888877753 2223456778888888888777432 2234556788888888887765322
Q ss_pred HHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCccccc
Q 007838 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCS 517 (588)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 517 (588)
..+..+++|++|++++|.+... +++|++|++++|++++.+|.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~~-----------~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDCT-----------CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCCC-----------TTTTHHHHHHHHHCTTTBBC
T ss_pred HHhccCCCccEEEecCCCeecC-----------CCCHHHHHHHHHhCCceeec
Confidence 2234567888888888876532 46788888888888877443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=8.7e-15 Score=148.70 Aligned_cols=183 Identities=20% Similarity=0.146 Sum_probs=134.1
Q ss_pred CCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHh-cCCCCcEEEccCCCCChHHHHHHHHH
Q 007838 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADA 410 (588)
Q Consensus 332 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~ 410 (588)
-+.++++++.+... ... -...++.|+|++|.++.. ....+. .+++|++|+|++|.++.. ....
T Consensus 20 ~~~l~c~~~~l~~i-----P~~---~~~~l~~L~Ls~N~l~~l----~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNV-----PQS---LPSYTALLDLSHNNLSRL----RAEWTPTRLTNLHSLLLSHNHLNFI----SSEA 83 (361)
T ss_dssp TTEEECCSSCCSSC-----CSS---CCTTCSEEECCSSCCCEE----CTTSSSSCCTTCCEEECCSSCCCEE----CTTT
T ss_pred CCEEEeCCCCcCcc-----Ccc---CCCCCCEEECCCCCCCcc----ChhhhhhcccccCEEECCCCcCCcc----Chhh
Confidence 36899999887652 211 124689999999999874 223344 789999999999999874 2345
Q ss_pred HhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHH
Q 007838 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490 (588)
Q Consensus 411 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 490 (588)
+..+++|++|+|++|+|+... ...+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|+|+......
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLD----EFLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred ccCCCCCCEEECCCCcCCcCC----HHHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCCcCCeeCHHH
Confidence 677899999999999987542 2345667999999999999876532 33456689999999999998765544
Q ss_pred HHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhc--ccchhhhhccchhHH
Q 007838 491 VADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKH--MLFYSLCINYLQGAK 549 (588)
Q Consensus 491 l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~--L~~L~Ls~n~l~~~~ 549 (588)
+.. +...++|+.|+|++|+|.+. .+..+..++. |+.|+|++|.+....
T Consensus 156 ~~~-~~~l~~L~~L~L~~N~l~~l----------~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 156 IKD-GNKLPKLMLLDLSSNKLKKL----------PLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp TC-----CTTCCEEECCSSCCCCC----------CHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred hcC-cccCCcCCEEECCCCCCCcc----------CHHHhhhccHhhcceEEecCCCccCCc
Confidence 311 12348999999999999976 3467777777 488999999987543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1.4e-14 Score=136.20 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=121.4
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (588)
.-+.++++++.++. ++..+ .++|++|++++|.++.. ....+..+++|++|+|++|+|+.. ....+
T Consensus 12 ~~~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~ 76 (220)
T 2v9t_B 12 SNNIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAF 76 (220)
T ss_dssp ETTEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTT
T ss_pred CCCEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHh
Confidence 34688999988877 44322 36899999999999874 223566789999999999999854 23456
Q ss_pred hcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCC
Q 007838 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC 519 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 519 (588)
..+++|++|+|++|.|+.... ..+..+++|++|+|++|+|+...+..+..+ ++|++|+|++|++.+.
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~----- 143 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVDAFQDL----HNLNLLSLYDNKLQTI----- 143 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTTTTTC----TTCCEEECCSSCCSCC-----
T ss_pred hCCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCHHHcCCC----CCCCEEECCCCcCCEE-----
Confidence 667999999999999885422 223556899999999999988766555444 9999999999999977
Q ss_pred CCchhhhhhHhhhhcccchhhhhccchh
Q 007838 520 NGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 520 ~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
.+..+..+++|+.|+|++|.+..
T Consensus 144 -----~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 144 -----AKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCEEC
T ss_pred -----CHHHHhCCCCCCEEEeCCCCcCC
Confidence 45668889999999999999864
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=4.9e-14 Score=143.13 Aligned_cols=182 Identities=14% Similarity=0.043 Sum_probs=135.5
Q ss_pred cceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhc-CCCCceEEEccCCCCChhhHHHHHHH
Q 007838 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSISAKGAFHVAEY 382 (588)
Q Consensus 304 L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (588)
-+.++++++.++.... . -.+.++.|+|++|.|+......+ . .+++|+.|+|++|.|+.. .+..
T Consensus 20 ~~~l~c~~~~l~~iP~-----~--~~~~l~~L~Ls~N~l~~l~~~~~-----~~~l~~L~~L~L~~N~i~~i----~~~~ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ-----S--LPSYTALLDLSHNNLSRLRAEWT-----PTRLTNLHSLLLSHNHLNFI----SSEA 83 (361)
T ss_dssp TTEEECCSSCCSSCCS-----S--CCTTCSEEECCSSCCCEECTTSS-----SSCCTTCCEEECCSSCCCEE----CTTT
T ss_pred CCEEEeCCCCcCccCc-----c--CCCCCCEEECCCCCCCccChhhh-----hhcccccCEEECCCCcCCcc----Chhh
Confidence 4688999888765321 1 13468999999999986432222 3 678999999999999874 2345
Q ss_pred HhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHH
Q 007838 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (588)
Q Consensus 383 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (588)
+..+++|++|+|++|.++.. ....+..+++|++|+|++|+|+... ...+..+++|+.|+|++|.|+......
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred ccCCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccEEC----HHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 67899999999999999874 2334667899999999999998542 334566799999999999988643322
Q ss_pred HHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCc--ccEEEeecCCCCcc
Q 007838 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT--ISILDLRANGLRDE 514 (588)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--L~~L~L~~n~l~~~ 514 (588)
+. .+..+++|++|+|++|+|+......+..+ +. ++.|+|++|.+.-.
T Consensus 156 ~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l----~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 156 IK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKL----PAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp TC-----CTTCCEEECCSSCCCCCCHHHHHHS----CHHHHTTEECCSSCEECC
T ss_pred hc-CcccCCcCCEEECCCCCCCccCHHHhhhc----cHhhcceEEecCCCccCC
Confidence 21 11446899999999999998887777665 65 48899999999755
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=1.7e-14 Score=135.67 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=123.0
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (588)
.-+.+++++|.++. ++.. -...+++|+|++|.++.... ...+..+++|++|+|++|.|+... ...+
T Consensus 12 ~~~~l~~s~n~l~~-----iP~~--~~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i~----~~~~ 77 (220)
T 2v70_A 12 EGTTVDCSNQKLNK-----IPEH--IPQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDIE----EGAF 77 (220)
T ss_dssp ETTEEECCSSCCSS-----CCSC--CCTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEEC----TTTT
T ss_pred CCCEeEeCCCCccc-----CccC--CCCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEEC----HHHh
Confidence 45789999998887 4432 23468999999999986410 123567899999999999998642 2345
Q ss_pred hcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCC
Q 007838 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC 519 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 519 (588)
..+++|++|+|++|.++.... ..+..+++|++|+|++|+|+...+..+..+ ++|++|+|++|++.+.
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~----- 144 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNRITCVGNDSFIGL----SSVRLLSLYDNQITTV----- 144 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSCCCCBCTTSSTTC----TTCSEEECTTSCCCCB-----
T ss_pred CCCCCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCcCCeECHhHcCCC----ccCCEEECCCCcCCEE-----
Confidence 667999999999999876533 234567899999999999988766555444 9999999999999977
Q ss_pred CCchhhhhhHhhhhcccchhhhhccchhHH
Q 007838 520 NGLSFFHSAIYSLKHMLFYSLCINYLQGAK 549 (588)
Q Consensus 520 ~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 549 (588)
.|..|..+++|+.|+|++|.+++..
T Consensus 145 -----~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 145 -----APGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp -----CTTTTTTCTTCCEEECCSCCEECSG
T ss_pred -----CHHHhcCCCCCCEEEecCcCCcCCC
Confidence 5778889999999999999987543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=2.8e-15 Score=160.72 Aligned_cols=161 Identities=15% Similarity=0.145 Sum_probs=92.1
Q ss_pred HHHHHhcCCCCcEEE-ccCCCCChHHHHHHHH-HHhh--CCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCC
Q 007838 379 VAEYIKNCKSLLWIN-LYMNDIGDEGAEKIAD-ALKQ--NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454 (588)
Q Consensus 379 l~~~l~~~~~L~~L~-L~~n~l~~~~~~~l~~-~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 454 (588)
++..+..+++|+.|+ ++.|.+.+.....+.. .+.. ...|+.|+|++|.++.. +. +..+++|+.|+|++|.
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-----p~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-----CH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-----CC-GGGGTTCCEEECCSSC
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-----cC-ccccccCcEeecCccc
Confidence 444555666666666 5554433211100000 0111 13577777777777642 22 4555777777777777
Q ss_pred CChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhh-hhhHhhhh
Q 007838 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFF-HSAIYSLK 533 (588)
Q Consensus 455 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~-~~~~~~l~ 533 (588)
|+. +...+..+++|++|+|++|+|+... . +..+++|++|+|++|+|++. . |..++.++
T Consensus 475 l~~-----lp~~~~~l~~L~~L~Ls~N~l~~lp--~----l~~l~~L~~L~Ls~N~l~~~----------~~p~~l~~l~ 533 (567)
T 1dce_A 475 LRA-----LPPALAALRCLEVLQASDNALENVD--G----VANLPRLQELLLCNNRLQQS----------AAIQPLVSCP 533 (567)
T ss_dssp CCC-----CCGGGGGCTTCCEEECCSSCCCCCG--G----GTTCSSCCEEECCSSCCCSS----------STTGGGGGCT
T ss_pred ccc-----cchhhhcCCCCCEEECCCCCCCCCc--c----cCCCCCCcEEECCCCCCCCC----------CCcHHHhcCC
Confidence 763 2234456677777777777777642 2 33447777777777777755 3 66777777
Q ss_pred cccchhhhhccchhHHHHH-HHHHhhhhccceeec
Q 007838 534 HMLFYSLCINYLQGAKCLA-QSFKVVNEALTSIDL 567 (588)
Q Consensus 534 ~L~~L~Ls~n~l~~~~~l~-~~~~~~~~~L~~L~l 567 (588)
+|+.|+|++|.+++..+.. ..+..+ ++|+.||+
T Consensus 534 ~L~~L~L~~N~l~~~~~~~~~l~~~l-p~L~~L~l 567 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGIQERLAEML-PSVSSILT 567 (567)
T ss_dssp TCCEEECTTSGGGGSSSCTTHHHHHC-TTCSEEEC
T ss_pred CCCEEEecCCcCCCCccHHHHHHHHC-cccCccCC
Confidence 7777777777776642211 112223 66777654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=4.4e-15 Score=159.22 Aligned_cols=214 Identities=14% Similarity=0.098 Sum_probs=127.7
Q ss_pred hCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHH
Q 007838 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351 (588)
Q Consensus 272 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 351 (588)
.++.|+.|+|++|++ ..++..+..+++|+.|++++|.. ...++..+..+ + +.......+
T Consensus 347 ~~~~L~~L~Ls~n~L-----~~Lp~~i~~l~~L~~L~l~~n~~----l~~l~~ll~~~------~-----~~~~~~~~l- 405 (567)
T 1dce_A 347 TDEQLFRCELSVEKS-----TVLQSELESCKELQELEPENKWC----LLTIILLMRAL------D-----PLLYEKETL- 405 (567)
T ss_dssp TTTTSSSCCCCHHHH-----HHHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHH------C-----TGGGHHHHH-
T ss_pred cCccceeccCChhhH-----HhhHHHHHHHHHHHHhccccchh----hhhHHHHHHhc------c-----cccCCHHHH-
Confidence 356788888888876 67888888889999999866531 11111111100 0 001000001
Q ss_pred HHHhcCCCCceEEE-ccCCCCChhhHH-----HHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCC
Q 007838 352 SGLSSRKGKLAVLD-IGNNSISAKGAF-----HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 425 (588)
Q Consensus 352 ~~l~~~~~~L~~L~-Ls~n~l~~~~~~-----~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 425 (588)
..+++|+.|+ ++.|.+.+.... .+.. +. ...|+.|+|++|.++. ++. +..+++|+.|+|++|
T Consensus 406 ----~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~-l~-~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 406 ----QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK-ME-YADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp ----HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-HH-HTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSS
T ss_pred ----HHHHhcccCcchhhcccchhhhhhhhcccccc-cC-ccCceEEEecCCCCCC-----CcC-ccccccCcEeecCcc
Confidence 1122344454 333322111000 0110 11 1258888888888876 333 666788888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhH-HHHHHHHHhcCCcccEE
Q 007838 426 NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISIL 504 (588)
Q Consensus 426 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L 504 (588)
.|+. ++..+..+++|+.|+|++|.|+.. . .+..+++|++|+|++|+|+... +..+.. +++|+.|
T Consensus 474 ~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~----l~~L~~L 538 (567)
T 1dce_A 474 RLRA-----LPPALAALRCLEVLQASDNALENV-----D-GVANLPRLQELLLCNNRLQQSAAIQPLVS----CPRLVLL 538 (567)
T ss_dssp CCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GGTTCSSCCEEECCSSCCCSSSTTGGGGG----CTTCCEE
T ss_pred cccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-ccCCCCCCcEEECCCCCCCCCCCcHHHhc----CCCCCEE
Confidence 8772 445667778888888888888752 2 4566788888888888887764 444444 4889999
Q ss_pred EeecCCCCcccccCCCCchhhhhhHhhhhcccchhh
Q 007838 505 DLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSL 540 (588)
Q Consensus 505 ~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~L 540 (588)
+|++|++.+.++ .....+..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~-------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEG-------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSS-------CTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCcc-------HHHHHHHHCcccCccCC
Confidence 999988886622 12234556778887764
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=2.3e-14 Score=134.65 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=118.1
Q ss_pred CEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHh
Q 007838 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412 (588)
Q Consensus 333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 412 (588)
+.++.+++.+... ... -.++++.|++++|.++.. .+..+..+++|++|+|++|.++.. ....+.
T Consensus 14 ~~v~c~~~~l~~i-----P~~---l~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-----PTN---LPETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQ 77 (220)
T ss_dssp TEEECTTSCCSSC-----CSS---CCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEEEcCCCCcCcC-----CCc---cCcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhh
Confidence 6788888887652 111 125799999999999874 223567889999999999999874 345677
Q ss_pred hCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHH
Q 007838 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (588)
Q Consensus 413 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (588)
.+++|++|+|++|.|+... ...+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|+|+......+.
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELP----KSLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp TCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCcCCCEEECCCCcCCccC----HhHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 7899999999999988432 2234567999999999999886533 3345668999999999999887655554
Q ss_pred HHHhcCCcccEEEeecCCCCcc
Q 007838 493 DMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 493 ~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
. .++|++|+|++|.+...
T Consensus 150 ~----l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 150 P----LRAIQTMHLAQNPFICD 167 (220)
T ss_dssp T----CTTCCEEECCSSCEECS
T ss_pred C----CCCCCEEEeCCCCcCCC
Confidence 4 49999999999998754
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=3.2e-14 Score=133.70 Aligned_cols=156 Identities=20% Similarity=0.161 Sum_probs=119.0
Q ss_pred CCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHH
Q 007838 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL 411 (588)
Q Consensus 332 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 411 (588)
-+.+++++|.++.. ... -...++.|++++|.++.... ...+..+++|++|+|++|.++.. ....+
T Consensus 13 ~~~l~~s~n~l~~i-----P~~---~~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i----~~~~~ 77 (220)
T 2v70_A 13 GTTVDCSNQKLNKI-----PEH---IPQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDI----EEGAF 77 (220)
T ss_dssp TTEEECCSSCCSSC-----CSC---CCTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEE----CTTTT
T ss_pred CCEeEeCCCCcccC-----ccC---CCCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEE----CHHHh
Confidence 36899999988652 211 22468999999999887310 12357899999999999999874 23356
Q ss_pred hhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHH
Q 007838 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491 (588)
Q Consensus 412 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 491 (588)
..+++|++|+|++|.++... ...+..+++|++|+|++|.|+.... ..+..+++|++|+|++|+++...+..+
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQ----HKMFKGLESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCC----GGGGTTCSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CCCCCCCEEECCCCccCccC----HhHhcCCcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCCcCCEECHHHh
Confidence 77899999999999988642 3346677999999999999886533 233556899999999999988766555
Q ss_pred HHHHhcCCcccEEEeecCCCCcc
Q 007838 492 ADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 492 ~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
..+ ++|++|+|++|.+...
T Consensus 150 ~~l----~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 150 DTL----HSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTC----TTCCEEECCSCCEECS
T ss_pred cCC----CCCCEEEecCcCCcCC
Confidence 544 9999999999999866
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=4.3e-14 Score=133.74 Aligned_cols=180 Identities=14% Similarity=0.062 Sum_probs=130.8
Q ss_pred CCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHH
Q 007838 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (588)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (588)
+..+.++.+++.++. ++. .-.++|++|+|++|.++.. ....+..+++|++|+|++|+++... ...
T Consensus 19 Cs~~~v~c~~~~l~~-----ip~--~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~----~~~ 83 (229)
T 3e6j_A 19 CSGTTVDCRSKRHAS-----VPA--GIPTNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALP----VGV 83 (229)
T ss_dssp EETTEEECTTSCCSS-----CCS--CCCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred EeCCEeEccCCCcCc-----cCC--CCCCCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcC----hhh
Confidence 467889999988877 333 2247899999999999874 3455677899999999999987432 233
Q ss_pred HhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccC
Q 007838 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSG 518 (588)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 518 (588)
+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|+|+... .. +..+++|++|+|++|++.+.
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~lp-~~----~~~l~~L~~L~L~~N~l~~~---- 150 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKELFMCCNKLTELP-RG----IERLTHLTHLALDQNQLKSI---- 150 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCSCC-TT----GGGCTTCSEEECCSSCCCCC----
T ss_pred cccCCCcCEEECCCCcCCccCh----hHhCcchhhCeEeccCCcccccC-cc----cccCCCCCEEECCCCcCCcc----
Confidence 5667999999999999876422 23356789999999999998542 22 34559999999999999976
Q ss_pred CCCchhhhhhHhhhhcccchhhhhccchh----HHHHHHHHHhhhhccceeeccCCcccc
Q 007838 519 CNGLSFFHSAIYSLKHMLFYSLCINYLQG----AKCLAQSFKVVNEALTSIDLAFNEIRV 574 (588)
Q Consensus 519 ~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~l~~~~~~~~~~L~~L~ls~N~i~~ 574 (588)
.+..+..+++|+.|+|++|.+.+ ...+...+... .-....+.++.+.+
T Consensus 151 ------~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~--~~~~~~~~g~~v~~ 202 (229)
T 3e6j_A 151 ------PHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH--TSIAMRWDGKAVND 202 (229)
T ss_dssp ------CTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC--GGGEEEESSSEEEC
T ss_pred ------CHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC--ccccccccCcccCC
Confidence 34668899999999999999874 33344444422 22233445554443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.5e-13 Score=121.79 Aligned_cols=139 Identities=15% Similarity=0.069 Sum_probs=81.9
Q ss_pred CCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHH
Q 007838 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (588)
Q Consensus 415 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (588)
++|++|++++|.+++. .++..+..+++|+.|++++|.++.. ..+..+++|++|++++|+++...+..+..
T Consensus 24 ~~L~~L~l~~n~l~~~---~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~- 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDG---KIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEK- 93 (168)
T ss_dssp TSCSEEECCSCBCBTT---BCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHHHH-
T ss_pred ccCCEEECCCCCCChh---hHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHHhh-
Confidence 4566666666655421 1222234446666666666665543 23344566777777777766642222222
Q ss_pred HhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHH-HHHHHhhhhccceeeccCCccc
Q 007838 495 LRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCL-AQSFKVVNEALTSIDLAFNEIR 573 (588)
Q Consensus 495 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l-~~~~~~~~~~L~~L~ls~N~i~ 573 (588)
+++|++|++++|.+.+. ..+..+..+++|++|++++|.+++.... ...+..+ ++|+.||+++|.+.
T Consensus 94 ---l~~L~~L~Ls~N~l~~~---------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 94 ---LPNLTHLNLSGNKLKDI---------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDREDQ 160 (168)
T ss_dssp ---CTTCCEEECBSSSCCSS---------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTSC
T ss_pred ---CCCCCEEeccCCccCcc---------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCChh
Confidence 37777788877777764 0125677777888888888877764321 1234444 77888888888776
Q ss_pred cCc
Q 007838 574 VSN 576 (588)
Q Consensus 574 ~~~ 576 (588)
+..
T Consensus 161 ~~~ 163 (168)
T 2ell_A 161 EAP 163 (168)
T ss_dssp BCC
T ss_pred hcc
Confidence 543
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=1.1e-13 Score=130.82 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=118.1
Q ss_pred CCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHH
Q 007838 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (588)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 410 (588)
.-+.++.+++.++.. .. .-.++|++|++++|.++.. .+..+..+++|++|+|++|.++.. ....
T Consensus 20 s~~~v~c~~~~l~~i-----p~---~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i----~~~~ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHASV-----PA---GIPTNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGAL----PVGV 83 (229)
T ss_dssp ETTEEECTTSCCSSC-----CS---CCCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTT
T ss_pred eCCEeEccCCCcCcc-----CC---CCCCCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCc----Chhh
Confidence 467889888877652 11 1236899999999998874 345567889999999999998763 2234
Q ss_pred HhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHH
Q 007838 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490 (588)
Q Consensus 411 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 490 (588)
+..+++|++|+|++|+|+... ...+..+++|+.|+|++|.|+. +...+..+++|++|+|++|+++......
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLP----SAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred cccCCCcCEEECCCCcCCccC----hhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccCHHH
Confidence 567899999999999988542 2334567999999999999884 3334467789999999999998765544
Q ss_pred HHHHHhcCCcccEEEeecCCCCcc
Q 007838 491 VADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 491 l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
+. ..++|+.|+|++|.+...
T Consensus 155 ~~----~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FD----RLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TT----TCTTCCEEECTTSCBCTT
T ss_pred Hh----CCCCCCEEEeeCCCccCC
Confidence 43 449999999999999865
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=5.4e-13 Score=117.00 Aligned_cols=132 Identities=12% Similarity=0.095 Sum_probs=69.8
Q ss_pred CCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHH
Q 007838 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (588)
Q Consensus 415 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (588)
++|++|++++|.+++. .++..+..+++|+.|++++|.+++. ..+..+++|++|++++|.++...+..+..
T Consensus 17 ~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEK- 86 (149)
T ss_dssp GGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHHHH-
T ss_pred ccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHhhh-
Confidence 3455555555555421 1222334445566666666655543 23344556666666666665543333322
Q ss_pred HhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHH-HHHHHhhhhccceeeccC
Q 007838 495 LRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCL-AQSFKVVNEALTSIDLAF 569 (588)
Q Consensus 495 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l-~~~~~~~~~~L~~L~ls~ 569 (588)
+++|++|++++|.+.+. ..+..+..+++|++|++++|.+++.... ...+..+ ++|+.||+++
T Consensus 87 ---l~~L~~L~ls~N~i~~~---------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~d 149 (149)
T 2je0_A 87 ---CPNLTHLNLSGNKIKDL---------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-PQLTYLDGYD 149 (149)
T ss_dssp ---CTTCCEEECTTSCCCSH---------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-TTCCEETTBC
T ss_pred ---CCCCCEEECCCCcCCCh---------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-CCcccccCCC
Confidence 36666777766666653 1235566667777777777766654321 1234434 6677777653
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=1.1e-13 Score=127.77 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=80.6
Q ss_pred HHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHH
Q 007838 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (588)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (588)
.+..+++|++|++++|.++... .+..+++|+.|++++|.++.. ...+..+++|++|++++|+++...
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~------~~~~l~~L~~L~l~~n~l~~l-----~~~~~~~~~L~~L~L~~N~l~~l~-- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIKKI-----ENLDAVADTLEELWISYNQIASLS-- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC------CHHHHTTCCEEEEEEEEECSC-----SSHHHHHHHCSEEEEEEEECCCHH--
T ss_pred HHhcCCCCCEEECCCCCCcccc------ccccCCCCCEEECCCCCcccc-----cchhhcCCcCCEEECcCCcCCcCC--
Confidence 4445566666666666555421 223336666666666655531 111222356777777777776642
Q ss_pred HHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHH--------HHHHHHhhhhc
Q 007838 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKC--------LAQSFKVVNEA 561 (588)
Q Consensus 490 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------l~~~~~~~~~~ 561 (588)
.+..+ ++|++|++++|++.+. .....+..+++|++|++++|.+++..+ ....+..+ ++
T Consensus 110 ~~~~l----~~L~~L~l~~N~i~~~---------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l-~~ 175 (198)
T 1ds9_A 110 GIEKL----VNLRVLYMSNNKITNW---------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL-PN 175 (198)
T ss_dssp HHHHH----HHSSEEEESEEECCCH---------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC-SS
T ss_pred ccccC----CCCCEEECCCCcCCch---------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC-CC
Confidence 34444 7777777777777754 012467777777777777777765421 12234444 77
Q ss_pred cceeeccCCccccCcc
Q 007838 562 LTSIDLAFNEIRVSNI 577 (588)
Q Consensus 562 L~~L~ls~N~i~~~~~ 577 (588)
|+.|| +|.++++..
T Consensus 176 L~~Ld--~~~i~~~e~ 189 (198)
T 1ds9_A 176 LKKLD--GMPVDVDER 189 (198)
T ss_dssp CSEEC--CGGGTTTTT
T ss_pred cEEEC--CcccCHHHH
Confidence 88887 777766543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=6e-13 Score=116.69 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=50.8
Q ss_pred CCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHH
Q 007838 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 493 (588)
Q Consensus 414 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 493 (588)
+++|++|++++|.+++. ..+..+++|+.|++++|.++.. +...+..+++|++|++++|.+++.... .
T Consensus 41 l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~ls~N~i~~~~~~---~ 107 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVLAEKCPNLTHLNLSGNKIKDLSTI---E 107 (149)
T ss_dssp CTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHHHHHCTTCCEEECTTSCCCSHHHH---G
T ss_pred cCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHHhhhCCCCCEEECCCCcCCChHHH---H
Confidence 34444444444444432 2233345555555555555442 112223345555555555555543210 1
Q ss_pred HHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhh
Q 007838 494 MLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLC 541 (588)
Q Consensus 494 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls 541 (588)
.+..+++|++|++++|++.+..+ .....+..+++|++|+++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLND-------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTT-------HHHHHHHHCTTCCEETTB
T ss_pred HHhhCCCCCEEeCcCCcccchHH-------HHHHHHHHCCCcccccCC
Confidence 12334666666666666654400 001356666666666664
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=3.6e-13 Score=120.80 Aligned_cols=112 Identities=17% Similarity=0.078 Sum_probs=51.5
Q ss_pred CCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHH-HHHH
Q 007838 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA-EFVA 492 (588)
Q Consensus 414 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~ 492 (588)
+++|++|++++|.++.. ..+..+++|+.|++++|.++.. +...+..+++|++|++++|.++.... ..
T Consensus 48 l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-- 115 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDMLAEKLPNLTHLNLSGNKLKDISTLEP-- 115 (168)
T ss_dssp GGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHHHHHCTTCCEEECBSSSCCSSGGGGG--
T ss_pred CCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHHHhhCCCCCEEeccCCccCcchhHHH--
Confidence 34444444444444422 2233344555555555544432 11222234555555555555544321 11
Q ss_pred HHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccch
Q 007838 493 DMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (588)
Q Consensus 493 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~ 546 (588)
+..+++|++|++++|.+.+..+ .....+..+++|++|++++|.+.
T Consensus 116 --l~~l~~L~~L~l~~N~l~~~~~-------~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 116 --LKKLECLKSLDLFNCEVTNLND-------YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp --GSSCSCCCEEECCSSGGGTSTT-------HHHHHHTTCSSCCEETTEETTSC
T ss_pred --HhcCCCCCEEEeeCCcCcchHH-------HHHHHHHhCccCcEecCCCCChh
Confidence 2233566666666666554400 00125556666666666666543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=2.5e-13 Score=150.14 Aligned_cols=192 Identities=15% Similarity=0.098 Sum_probs=103.6
Q ss_pred CCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhh-----HHHHHHHHhcCCCCcEEEccCCCCChHH
Q 007838 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG-----AFHVAEYIKNCKSLLWINLYMNDIGDEG 403 (588)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 403 (588)
.+.++.|+|.++.+...... .++.++|+.+.|.... ....+..+..+++|+.|+|++|.+..
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~-----------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-- 238 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQA-----------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-- 238 (727)
T ss_dssp -------------------------------------------------------------CCCCCCEEECTTSCCSC--
T ss_pred CCccceEEeeCCCCCcchhh-----------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC--
Confidence 46788899988877653211 2444455554443321 12245667788999999999998875
Q ss_pred HHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCC
Q 007838 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (588)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (588)
+...+..+++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+. +...+..+++|++|+|++|.|
T Consensus 239 ---l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 239 ---ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp ---CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSEEECCSSCC
T ss_pred ---CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCEEECCCCCC
Confidence 44445578899999999998872 45556777999999999998873 333456668899999999998
Q ss_pred ChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhc-ccchhhhhccchhHHHHHHHHHhhhhcc
Q 007838 484 GASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKH-MLFYSLCINYLQGAKCLAQSFKVVNEAL 562 (588)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~l~~~~~~~~~~L 562 (588)
+.... .| ..+++|++|+|++|.+.+. +|..+..+.. +..|+|++|.+++. ++ ..|
T Consensus 306 ~~lp~-~~----~~l~~L~~L~L~~N~l~~~----------~p~~~~~~~~~~~~l~l~~N~l~~~--~p-------~~l 361 (727)
T 4b8c_D 306 TTLPW-EF----GNLCNLQFLGVEGNPLEKQ----------FLKILTEKSVTGLIFYLRDNRPEIP--LP-------HER 361 (727)
T ss_dssp CCCCS-ST----TSCTTCCCEECTTSCCCSH----------HHHHHHHHHHHHHHHHHHHCCCCCC--CC-------CC-
T ss_pred CccCh-hh----hcCCCccEEeCCCCccCCC----------ChHHHhhcchhhhHHhhccCcccCc--Cc-------ccc
Confidence 75432 23 4448999999999999977 6677765533 34588999998874 21 568
Q ss_pred ceeeccCC
Q 007838 563 TSIDLAFN 570 (588)
Q Consensus 563 ~~L~ls~N 570 (588)
+.|+++.|
T Consensus 362 ~~l~l~~n 369 (727)
T 4b8c_D 362 RFIEINTD 369 (727)
T ss_dssp --------
T ss_pred ceeEeecc
Confidence 88888877
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=2.1e-13 Score=150.81 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChh-----hHHHHHHHHhhCCCcceeecCCCCCChhHHH
Q 007838 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS-----GFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (588)
Q Consensus 246 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~ 320 (588)
+.++.|+|.++.+..... ..|+.++|+.+.|... .+...+..+..+..|+.|+|++|.+....
T Consensus 173 ~~~~~l~L~~n~~~~~~~----------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-- 240 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ----------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS-- 240 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCSCCC--
T ss_pred CccceEEeeCCCCCcchh----------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCC--
Confidence 557778887776655211 1134444444443221 11222334444555666666655544221
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCC
Q 007838 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (588)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 400 (588)
..+..+++|++|+|++|.|+. +...+ ..+++|++|+|++|.|+. ++..+..+++|++|+|++|.++
T Consensus 241 ---~~~~~l~~L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 241 ---ANIFKYDFLTRLYLNGNSLTE-----LPAEI-KNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp ---GGGGGCCSCSCCBCTTSCCSC-----CCGGG-GGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSEEECCSSCCC
T ss_pred ---hhhcCCCCCCEEEeeCCcCcc-----cChhh-hCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCEEECCCCCCC
Confidence 123345555555555555542 11111 233455555555555552 3444455555555555555554
Q ss_pred hHHHHHHHHHHhhCCCccEEEeeCCcCCHH
Q 007838 401 DEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (588)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 430 (588)
. ++..+..+++|++|+|++|.++..
T Consensus 307 ~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 307 T-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp C-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred c-----cChhhhcCCCccEEeCCCCccCCC
Confidence 2 333344455555555555555543
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=1.8e-14 Score=145.74 Aligned_cols=240 Identities=13% Similarity=0.025 Sum_probs=103.0
Q ss_pred CEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHH-HHHhhCCCcceeecCCCCCCh-hHHHHHHHHh
Q 007838 249 ERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLA-EALLENSTIRSLHLNGNYGGA-LGANALAKGL 326 (588)
Q Consensus 249 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~~~~~~-~~~~~l~~~l 326 (588)
++++.++++++... ..+ .+++++|+|++|+|+. ++ ..+.++++|++|+|++|.+.. ... .++
T Consensus 12 ~~v~C~~~~Lt~iP-----~~l--~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f 75 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-----SDL--PRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEA----DVF 75 (350)
T ss_dssp TEEEEESTTCCSCC-----TTC--CTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECT----TSB
T ss_pred CEEEecCCCCCccC-----cCc--CCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccCh----hHh
Confidence 45566666655421 111 1456666666666642 22 233455666666666665422 111 123
Q ss_pred hcCCCCCE-EEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccC-CCCChHHH
Q 007838 327 EGNKSLRE-LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGA 404 (588)
Q Consensus 327 ~~~~~L~~-L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~ 404 (588)
.+++++++ +.+.+|++.......+ ..+++|++|++++|.+... .........++..|++.+ +.+....
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~l~l~~~~~i~~l~- 145 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAF-----QNLPNLQYLLISNTGIKHL----PDVHKIHSLQKVLLDIQDNINIHTIE- 145 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSB-----CCCTTCCEEEEEEECCSSC----CCCTTCCBSSCEEEEEESCTTCCEEC-
T ss_pred hcchhhhhhhcccCCcccccCchhh-----hhccccccccccccccccC----Cchhhcccchhhhhhhcccccccccc-
Confidence 34444443 3334444443211111 3445555555555555432 001112233444555543 2333210
Q ss_pred HHHHHHHhhC-CCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcC-CCCChHHHHHHHHHHhhCCCccEEEcccCC
Q 007838 405 EKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (588)
Q Consensus 405 ~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (588)
...+..+ ..++.|++++|+|+.. ........+|++|++.+ |.++.... +.+..+++|++|++++|+
T Consensus 146 ---~~~f~~~~~~l~~L~L~~N~i~~i-----~~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 146 ---RNSFVGLSFESVILWLNKNGIQEI-----HNSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTR 213 (350)
T ss_dssp ---TTSSTTSBSSCEEEECCSSCCCEE-----CTTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSC
T ss_pred ---ccchhhcchhhhhhccccccccCC-----ChhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCC
Confidence 0011111 2355555555555421 11111224455555543 33332211 112233455555555555
Q ss_pred CChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhcc
Q 007838 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (588)
Q Consensus 483 i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~ 544 (588)
|+...... ..+|+.|.+.++ .+++.+| .+..+++|+.+++.++.
T Consensus 214 l~~lp~~~-------~~~L~~L~~l~~----------~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 214 IHSLPSYG-------LENLKKLRARST----------YNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCCCSSS-------CTTCCEEECTTC----------TTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred cCccChhh-------hccchHhhhccC----------CCcCcCC-CchhCcChhhCcCCCCc
Confidence 54432211 134444444333 2233344 46778888888887665
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.3e-12 Score=118.00 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=74.3
Q ss_pred cCCCCcEEEccCCCCChHHHHHHHHHHhhC-CCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHH
Q 007838 385 NCKSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (588)
Q Consensus 385 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (588)
.+.+|++|++++|.++.. .. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.|+.....
T Consensus 17 ~~~~L~~L~l~~n~l~~i-----~~-~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~-- 82 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-----EN-LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEG-- 82 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-----CC-GGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSC--
T ss_pred CcCCceEEEeeCCCCchh-----HH-hhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCcc--
Confidence 456677777777776642 11 2222 3677777777776642 2345556677777777766543211
Q ss_pred HHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhh----hHhhhhcccchh
Q 007838 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHS----AIYSLKHMLFYS 539 (588)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~----~~~~l~~L~~L~ 539 (588)
.+..+++|++|++++|+|+..... ..+..+++|++|++++|.+.+. +. .+..+++|+.|+
T Consensus 83 --~~~~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~i~~~-----------~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 83 --LDQALPDLTELILTNNSLVELGDL---DPLASLKSLTYLCILRNPVTNK-----------KHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp --HHHHCTTCCEEECCSCCCCCGGGG---GGGGGCTTCCEEECCSSGGGGS-----------TTHHHHHHHHCTTCSEET
T ss_pred --hhhcCCCCCEEECCCCcCCcchhh---HhhhcCCCCCEEEecCCCCCCc-----------HhHHHHHHHHCCccceeC
Confidence 123446666666666666553320 1133346666666666666543 22 356666666666
Q ss_pred hhhccchh
Q 007838 540 LCINYLQG 547 (588)
Q Consensus 540 Ls~n~l~~ 547 (588)
+++|.+..
T Consensus 147 ~~~n~~~~ 154 (176)
T 1a9n_A 147 FQKVKLKE 154 (176)
T ss_dssp TEECCHHH
T ss_pred CCcCCHHH
Confidence 66666543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=5.5e-13 Score=123.10 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=33.6
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (588)
+|+.|++++|.++. ++..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++... ...+
T Consensus 71 ~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~l-----~-~~~~l~~L~~L~l~~N~i~~~~~---~~~l 136 (198)
T 1ds9_A 71 NLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASL-----S-GIEKLVNLRVLYMSNNKITNWGE---IDKL 136 (198)
T ss_dssp TCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCCH-----H-HHHHHHHSSEEEESEEECCCHHH---HHHH
T ss_pred CCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCcC-----C-ccccCCCCCEEECCCCcCCchhH---HHHH
Confidence 44444444444442 222223334445555555544431 1 12233444555555554443211 0123
Q ss_pred hcCCCcCEEECcCCCC
Q 007838 440 KDNSVITSLDLAYNPI 455 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i 455 (588)
..+++|++|++++|.+
T Consensus 137 ~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPL 152 (198)
T ss_dssp TTTTTCSEEEECSCHH
T ss_pred hcCCCCCEEEecCCcc
Confidence 3334445555544443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=4.4e-12 Score=114.56 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=77.0
Q ss_pred CCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHH
Q 007838 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 493 (588)
Q Consensus 414 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 493 (588)
+.+|++|++++|+++.. .......++|+.|++++|.|++. ..+..+++|++|++++|+|+......+..
T Consensus 18 ~~~L~~L~l~~n~l~~i-----~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-----ENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSC-----CCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchh-----HHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCcchhhc
Confidence 45677777777766632 11111223677777777766652 23345567777777777776554333333
Q ss_pred HHhcCCcccEEEeecCCCCcccccCCCCchhhhh--hHhhhhcccchhhhhccchhHHHH-HHHHHhhhhccceeeccCC
Q 007838 494 MLRYNNTISILDLRANGLRDEVCSGCNGLSFFHS--AIYSLKHMLFYSLCINYLQGAKCL-AQSFKVVNEALTSIDLAFN 570 (588)
Q Consensus 494 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~l-~~~~~~~~~~L~~L~ls~N 570 (588)
+ ++|++|++++|.+.+. +. .+..+++|+.|++++|.++..... ...+..+ ++|+.||+++|
T Consensus 87 l----~~L~~L~L~~N~i~~~-----------~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l-~~L~~Ld~~~n 150 (176)
T 1a9n_A 87 L----PDLTELILTNNSLVEL-----------GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV-PQVRVLDFQKV 150 (176)
T ss_dssp C----TTCCEEECCSCCCCCG-----------GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC-TTCSEETTEEC
T ss_pred C----CCCCEEECCCCcCCcc-----------hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC-CccceeCCCcC
Confidence 3 6777777777777543 33 566677777777777776543211 1123333 66777777777
Q ss_pred cccc
Q 007838 571 EIRV 574 (588)
Q Consensus 571 ~i~~ 574 (588)
.+.+
T Consensus 151 ~~~~ 154 (176)
T 1a9n_A 151 KLKE 154 (176)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=1.4e-12 Score=119.70 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=63.6
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (588)
.-+.++++++.++. ++..+ ..+|++|++++|.++..... ..+..+++|++|+|++|.|+.. .+..+
T Consensus 9 ~~~~l~~s~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~----~~~~~ 74 (192)
T 1w8a_A 9 EGTTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGI----EPNAF 74 (192)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCB----CTTTT
T ss_pred CCCEEEcCCCCcCc-----CccCC--CCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCc----CHhHc
Confidence 34677777776655 33211 23677777777766542100 1244556666666666666543 12233
Q ss_pred hcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCc
Q 007838 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 513 (588)
..+++|++|+|++|.|+..... .+..+++|++|+|++|+++...+..+..+ ++|++|+|++|.+..
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l----~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQISCVMPGSFEHL----NSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCCEECTTSSTTC----TTCCEEECTTCCBCC
T ss_pred CCcccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCCeeCHHHhhcC----CCCCEEEeCCCCccC
Confidence 4445666666666655443211 12223444444444444444332222222 444444444444443
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.9e-12 Score=118.70 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=104.5
Q ss_pred CcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 389 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
-+.+++++|.++. ++..+ ..+|++|++++|.++..... ..+..+++|++|+|++|.|+.... ..+.
T Consensus 10 ~~~l~~s~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~ 75 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEP----NAFE 75 (192)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCT----TTTT
T ss_pred CCEEEcCCCCcCc-----CccCC--CCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCH----hHcC
Confidence 3789999998875 33322 24899999999998754211 125667999999999999886532 3445
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
.+++|++|+|++|+|+......+..+ ++|++|+|++|++.+. .|..+..+++|++|+|++|.+++.
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGL----HQLKTLNLYDNQISCV----------MPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTC----TTCCEEECCSSCCCEE----------CTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcccCCEEECCCCcCCccCHHHhcCC----CCCCEEECCCCcCCee----------CHHHhhcCCCCCEEEeCCCCccCc
Confidence 67899999999999988766545444 9999999999999987 677888999999999999999865
Q ss_pred HHH
Q 007838 549 KCL 551 (588)
Q Consensus 549 ~~l 551 (588)
..+
T Consensus 142 c~l 144 (192)
T 1w8a_A 142 CHL 144 (192)
T ss_dssp GGG
T ss_pred Ccc
Confidence 433
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=6.3e-12 Score=125.85 Aligned_cols=219 Identities=13% Similarity=0.077 Sum_probs=109.6
Q ss_pred CCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCC-------CCh
Q 007838 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-------ISA 373 (588)
Q Consensus 301 ~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-------l~~ 373 (588)
|.+|++|++.. .++..+. .++..|++|++|++++|.+...+...+ ..+.++..+.+.... +.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i~~~aF-----~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNLLPEAL-----ADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp CTTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEECTTSS-----CTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred cCCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCccccchhhh-----cCCCceEEecCcchhhhhccccccc
Confidence 67777777766 4444332 235567777777777776543222222 334455555544310 111
Q ss_pred hhHHHHHHHHhcCCCCc-EEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcC
Q 007838 374 KGAFHVAEYIKNCKSLL-WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452 (588)
Q Consensus 374 ~~~~~l~~~l~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 452 (588)
..+..|..|+ .+.+....--.. .+...--...+++.+.+.++ +.......+. ..|++|+.|+|++
T Consensus 170 -------~~f~~~~~L~~~i~~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 170 -------FAFIEGEPLETTIQVGAMGKLED---EIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNLVSLDISK 235 (329)
T ss_dssp -------SCEEESCCCEEEEEECTTCCHHH---HHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTCCEEECTT
T ss_pred -------cccccccccceeEEecCCCcHHH---HHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCCeEEECCC
Confidence 0123444554 344433211000 01111011345566666654 3333322222 2356777777777
Q ss_pred CCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCccc-EEEeecCCCCcccccCCCCchhhhhhHhh
Q 007838 453 NPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS-ILDLRANGLRDEVCSGCNGLSFFHSAIYS 531 (588)
Q Consensus 453 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~~~~~~~~ 531 (588)
|.++..+.. .+..|.+|+.|+|.+| ++..+..+| ..|++|+ .+++.+ .+... -+..|.+
T Consensus 236 n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~aF----~~~~~L~~~l~l~~-~l~~I----------~~~aF~~ 295 (329)
T 3sb4_A 236 TNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRVF----SNCGRLAGTLELPA-SVTAI----------EFGAFMG 295 (329)
T ss_dssp BCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTT----TTCTTCCEEEEECT-TCCEE----------CTTTTTT
T ss_pred CCcceecHh----hhhCCCCCCEEECCcc-cceehHHHh----hCChhccEEEEEcc-cceEE----------chhhhhC
Confidence 665544322 2344567777777665 555544433 3347777 777766 55433 3466777
Q ss_pred hhcccchhhhhccchhHHHHHHHHHhhhhccceee
Q 007838 532 LKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSID 566 (588)
Q Consensus 532 l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ 566 (588)
|++|+.+++++|+++.. -..++..+ ++|+.|+
T Consensus 296 c~~L~~l~l~~n~i~~I--~~~aF~~~-~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTL--GDELFGNG-VPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEE--CTTTTCTT-CCCCEEE
T ss_pred CccCCEEEeCCCccCcc--chhhhcCC-cchhhhc
Confidence 77777777777766653 22334444 5666664
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=5.4e-12 Score=115.70 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=100.9
Q ss_pred CcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 389 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
-+.++++++.++. ++..+ .++|++|++++|.|+. ++..+..+++|+.|+|++|.|+.... ..+.
T Consensus 12 ~~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~----~~f~ 75 (193)
T 2wfh_A 12 DTVVRCSNKGLKV-----LPKGI--PRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSN----QSFS 75 (193)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCT----TTTT
T ss_pred CCEEEcCCCCCCc-----CCCCC--CCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCH----hHcc
Confidence 3688999998876 33222 2689999999999883 33567778999999999999886532 2345
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
.+++|++|+|++|+|+...+..|..+ ++|++|+|++|.|... .+..|..+++|+.|+|++|.+..
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l----~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGL----KSLRLLSLHGNDISVV----------PEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTC----TTCCEEECCSSCCCBC----------CTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCC----CCCCEEECCCCCCCee----------ChhhhhcCccccEEEeCCCCeec
Confidence 66899999999999988766555544 9999999999999966 34568889999999999999864
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=8.1e-12 Score=125.02 Aligned_cols=286 Identities=14% Similarity=0.090 Sum_probs=170.7
Q ss_pred CCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHH
Q 007838 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (588)
Q Consensus 246 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~ 325 (588)
.+|++|.++++ +.......+... +++|++|||++|+|...... . ...+.++.+.+..+.+.. .+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~---l~~L~~LdLs~n~i~~~~~~---~--~~~~~~~~~~~~~~~I~~-------~a 88 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDE---FPSLKVLDISNAEIKMYSGK---A--GTYPNGKFYIYMANFVPA-------YA 88 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHS---CTTCCEEEEEEEEECCEEES---S--SSSGGGCCEEECTTEECT-------TT
T ss_pred CceeEEEEecc-ccHHHHHHHHHh---hccCeEEecCcceeEEecCc---c--ccccccccccccccccCH-------HH
Confidence 34566666543 333222222221 46677777777766410000 0 011223444444443332 22
Q ss_pred hhc--------CCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC
Q 007838 326 LEG--------NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (588)
Q Consensus 326 l~~--------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 397 (588)
+.+ |++|++|+|.+ .+..-+-..+ ..+++|+.|++.+|.+...+. .++..+.++..+.+..+
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF-----~~~~~L~~l~l~~n~i~~i~~----~aF~~~~~l~~l~~~~~ 158 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF-----KGCDNLKICQIRKKTAPNLLP----EALADSVTAIFIPLGSS 158 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCCEECTTTT-----TTCTTCCEEEBCCSSCCEECT----TSSCTTTCEEEECTTCT
T ss_pred hcccccccccccCCCcEEECCc-cccchhHHHh-----hcCcccceEEcCCCCccccch----hhhcCCCceEEecCcch
Confidence 456 89999999988 6655332223 578899999999997765422 33455666776666542
Q ss_pred CCChHHHHHH-HHHHhhCCCcc-EEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccE
Q 007838 398 DIGDEGAEKI-ADALKQNRTIT-TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (588)
Q Consensus 398 ~l~~~~~~~l-~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (588)
.... +...+ ..++..+..|+ .+.+.....-.. .+...-....+++.+.+.++ +.......+. ..+++|+.
T Consensus 159 ~~~~-~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L~~ 230 (329)
T 3sb4_A 159 DAYR-FKNRWEHFAFIEGEPLETTIQVGAMGKLED---EIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNLVS 230 (329)
T ss_dssp HHHH-TSTTTTTSCEEESCCCEEEEEECTTCCHHH---HHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTCCE
T ss_pred hhhh-ccccccccccccccccceeEEecCCCcHHH---HHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCCeE
Confidence 1100 00000 01233456676 666655432111 12222122367888888876 4444444333 34789999
Q ss_pred EEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhccc-chhhhhccchhHHHHHHH
Q 007838 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML-FYSLCINYLQGAKCLAQS 554 (588)
Q Consensus 476 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~l~~~ 554 (588)
|+|++|+++..+...|. .|++|++|+|.+| +... -...|.+|++|+ .+++.+ +++.. -..+
T Consensus 231 l~L~~n~i~~I~~~aF~----~~~~L~~l~l~~n-i~~I----------~~~aF~~~~~L~~~l~l~~-~l~~I--~~~a 292 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFA----QKKYLLKIKLPHN-LKTI----------GQRVFSNCGRLAGTLELPA-SVTAI--EFGA 292 (329)
T ss_dssp EECTTBCCCEECTTTTT----TCTTCCEEECCTT-CCEE----------CTTTTTTCTTCCEEEEECT-TCCEE--CTTT
T ss_pred EECCCCCcceecHhhhh----CCCCCCEEECCcc-ccee----------hHHHhhCChhccEEEEEcc-cceEE--chhh
Confidence 99999999888766554 4599999999998 6544 357899999999 999998 66543 2245
Q ss_pred HHhhhhccceeeccCCccccCccccccccc
Q 007838 555 FKVVNEALTSIDLAFNEIRVSNIIFFPFFS 584 (588)
Q Consensus 555 ~~~~~~~L~~L~ls~N~i~~~~~~~l~~~~ 584 (588)
+..+ ++|+.|++++|.|+..+..+|....
T Consensus 293 F~~c-~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 293 FMGC-DNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TTTC-TTEEEEEECSSCCCEECTTTTCTTC
T ss_pred hhCC-ccCCEEEeCCCccCccchhhhcCCc
Confidence 6655 8999999999999998887776543
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.05 E-value=1.1e-12 Score=132.59 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=143.1
Q ss_pred ceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHH-HHH
Q 007838 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYI 383 (588)
Q Consensus 305 ~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l 383 (588)
++++.++++++... ..+ .+++++|+|++|+|+......+ ..+++|++|+|++|.+... ++ ..+
T Consensus 12 ~~v~C~~~~Lt~iP-----~~l--~~~l~~L~Ls~N~i~~i~~~~f-----~~l~~L~~L~Ls~N~i~~~----i~~~~f 75 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-----SDL--PRNAIELRFVLTKLRVIQKGAF-----SGFGDLEKIEISQNDVLEV----IEADVF 75 (350)
T ss_dssp TEEEEESTTCCSCC-----TTC--CTTCSEEEEESCCCSEECTTSS-----TTCTTCCEEEEECCTTCCE----ECTTSB
T ss_pred CEEEecCCCCCccC-----cCc--CCCCCEEEccCCcCCCcCHHHH-----cCCCCCCEEECcCCCCCCc----cChhHh
Confidence 45666666665432 112 3589999999999976322222 5778999999999987542 21 234
Q ss_pred hcCCCCcE-EEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcC-CCCChHHHH
Q 007838 384 KNCKSLLW-INLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAK 461 (588)
Q Consensus 384 ~~~~~L~~-L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~ 461 (588)
..++++++ +.+.+|++... ....+..+++|++|++++|+++.... ........+..|++.+ +.+......
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l----~~~~f~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYI----NPEAFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEE----CTTSBCCCTTCCEEEEEEECCSSCCC----CTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred hcchhhhhhhcccCCccccc----CchhhhhccccccccccccccccCCc----hhhcccchhhhhhhcccccccccccc
Confidence 56777765 56667888764 23456778999999999998874321 1122335677888865 455543221
Q ss_pred HHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeec-CCCCcccccCCCCchhhhhhHhhhhcccchhh
Q 007838 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA-NGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSL 540 (588)
Q Consensus 462 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~L 540 (588)
.+. .....++.|++++|+|+......+. ..+|++|++.+ |.+... -++.|.++++|++|+|
T Consensus 148 ~f~---~~~~~l~~L~L~~N~i~~i~~~~f~-----~~~L~~l~l~~~n~l~~i----------~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 148 SFV---GLSFESVILWLNKNGIQEIHNSAFN-----GTQLDELNLSDNNNLEEL----------PNDVFHGASGPVILDI 209 (350)
T ss_dssp SST---TSBSSCEEEECCSSCCCEECTTSST-----TEEEEEEECTTCTTCCCC----------CTTTTTTEECCSEEEC
T ss_pred chh---hcchhhhhhccccccccCCChhhcc-----ccchhHHhhccCCcccCC----------CHHHhccCcccchhhc
Confidence 121 1124688999999999876544332 26899999986 555544 2356899999999999
Q ss_pred hhccchhHHHHHHHHHhhhhccceeeccCC
Q 007838 541 CINYLQGAKCLAQSFKVVNEALTSIDLAFN 570 (588)
Q Consensus 541 s~n~l~~~~~l~~~~~~~~~~L~~L~ls~N 570 (588)
++|+|+... ...+ ..|+.|.+.++
T Consensus 210 s~N~l~~lp--~~~~----~~L~~L~~l~~ 233 (350)
T 4ay9_X 210 SRTRIHSLP--SYGL----ENLKKLRARST 233 (350)
T ss_dssp TTSCCCCCC--SSSC----TTCCEEECTTC
T ss_pred CCCCcCccC--hhhh----ccchHhhhccC
Confidence 999998742 2223 55777776554
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=2.2e-11 Score=111.65 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=99.9
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (588)
.-+.++++++.++. ++.. -.++|++|++++|.++. ++..+..+++|++|+|++|.|+... ...+
T Consensus 11 ~~~~l~~~~~~l~~-----ip~~--~~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~----~~~f 74 (193)
T 2wfh_A 11 LDTVVRCSNKGLKV-----LPKG--IPRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLS----NQSF 74 (193)
T ss_dssp ETTEEECTTSCCSS-----CCSC--CCTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCC----TTTT
T ss_pred CCCEEEcCCCCCCc-----CCCC--CCCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeC----HhHc
Confidence 34688999998876 4432 23589999999999885 4456778899999999999988542 2345
Q ss_pred hcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
..+++|++|+|++|.|+..... .+..+++|++|+|++|+|+......+.. .++|+.|+|++|.+...
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPR----TFDGLKSLRLLSLHGNDISVVPEGAFND----LSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTT----CTTCCEEECCSSCEECS
T ss_pred cCCCCCCEEECCCCccCEeCHH----HhCCCCCCCEEECCCCCCCeeChhhhhc----CccccEEEeCCCCeecC
Confidence 6679999999999988865332 3456689999999999998765544444 48999999999998754
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=4.1e-11 Score=108.23 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=38.0
Q ss_pred CCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhH
Q 007838 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (588)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 548 (588)
+++|++|++++|+++......+. ..++|++|++++|.+.+. .+..+..+++|++|+|++|.+.+.
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~----~l~~L~~L~l~~N~l~~~----------~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFD----KLTQLKELALDTNQLKSV----------PDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCSCC----------CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccCEEECCCCCccccCHHHhh----CCcccCEEECcCCcceEe----------CHHHhcCCcccCEEEecCCCeecc
Confidence 45555566655555544333222 236777777777777644 233456677777777777776653
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=4.6e-11 Score=107.91 Aligned_cols=132 Identities=21% Similarity=0.133 Sum_probs=94.0
Q ss_pred CccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHH
Q 007838 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML 495 (588)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 495 (588)
..+.+++++++++... .. ..++|+.|++++|.++.... ..+..+++|++|++++|+++......+.
T Consensus 8 ~~~~l~~~~~~l~~~p-----~~--~~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~--- 73 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP-----TG--IPSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSQNQIQSLPDGVFD--- 73 (177)
T ss_dssp ETTEEECCSSCCSSCC-----TT--CCTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCTTTTT---
T ss_pred CCCEEEecCCCCccCC-----CC--CCCCCcEEEeCCCcccEeCH----HHhcCcccccEEECCCCcceEeChhHcc---
Confidence 3466777776665321 11 12577888888887764322 2234557888888888888766544443
Q ss_pred hcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccCCccccC
Q 007838 496 RYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRVS 575 (588)
Q Consensus 496 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N~i~~~ 575 (588)
.+++|++|++++|++++. .+..+..+++|++|++++|++++.. ...+..+ ++|++|+|++|+++..
T Consensus 74 -~l~~L~~L~l~~N~l~~~----------~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l-~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 74 -KLTKLTILYLHENKLQSL----------PNGVFDKLTQLKELALDTNQLKSVP--DGIFDRL-TSLQKIWLHTNPWDCS 139 (177)
T ss_dssp -TCTTCCEEECCSSCCCCC----------CTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTC-TTCCEEECCSSCBCCC
T ss_pred -CCCccCEEECCCCCcccc----------CHHHhhCCcccCEEECcCCcceEeC--HHHhcCC-cccCEEEecCCCeecc
Confidence 349999999999999977 4456789999999999999998752 2334444 7899999999998754
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.92 E-value=1.3e-09 Score=96.29 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=52.5
Q ss_pred CceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCC-CCChHHHHHHHHHHhhCCCccEEEeeCC-cCCHHHHHHHHH
Q 007838 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIAR 437 (588)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 437 (588)
+|+.||+++|.|++.|+..+ ..|++|++|+|++| .++|.|+..+...-..+++|++|+|++| +||+.|+..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 46666666666666655333 45666666666666 4666666555431001135666666666 46666655432
Q ss_pred HHhcCCCcCEEECcCC-CCChHH
Q 007838 438 VLKDNSVITSLDLAYN-PIGADG 459 (588)
Q Consensus 438 ~l~~~~~L~~L~Ls~n-~i~~~~ 459 (588)
.+++|+.|++++| .|++.+
T Consensus 137 ---~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 ---HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ---GCTTCCEEEEESCTTCCCHH
T ss_pred ---cCCCCCEEECCCCCCCCchH
Confidence 3466666666666 355544
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.87 E-value=2.4e-09 Score=94.66 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=50.9
Q ss_pred CCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEccCC-CCChHHHHHHH
Q 007838 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIA 408 (588)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~ 408 (588)
.|++||+++|.|++.|+..+ ..+++|++|+|++| .|++.|+..+...-..+++|++|+|++| .++|.|+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L- 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL- 135 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-
T ss_pred eEeEEeCcCCCccHHHHHHh-----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-
Confidence 46666666666666665554 35556666666666 3666655544321001235666666665 4666655443
Q ss_pred HHHhhCCCccEEEeeCC-cCCHHH
Q 007838 409 DALKQNRTITTIDLGGN-NIHSKG 431 (588)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n-~i~~~~ 431 (588)
..+++|++|+|++| +|++.+
T Consensus 136 ---~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 136 ---HHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ---GGCTTCCEEEEESCTTCCCHH
T ss_pred ---hcCCCCCEEECCCCCCCCchH
Confidence 34566666666666 455543
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=2.9e-10 Score=101.82 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=88.4
Q ss_pred CccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHH
Q 007838 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML 495 (588)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 495 (588)
..+++++++|.++.. +..+ .++|+.|+|++|.|+.... ..+..+++|++|+|++|+|+......+..+
T Consensus 10 ~~~~l~~s~n~l~~i-----p~~~--~~~l~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l- 77 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-----PTGI--PTTTQVLYLYDNQITKLEP----GVFDRLTQLTRLDLDNNQLTVLPAGVFDKL- 77 (170)
T ss_dssp ETTEEECTTSCCSSC-----CSCC--CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCTTTTTTC-
T ss_pred CCCEEEeCCCCcCcc-----CccC--CCCCcEEEcCCCcCCccCh----hhhcCcccCCEEECCCCCcCccChhhccCC-
Confidence 568999999988743 2222 2789999999999886532 334566899999999999988765544444
Q ss_pred hcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh----HHHHHHHHHh
Q 007838 496 RYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG----AKCLAQSFKV 557 (588)
Q Consensus 496 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~l~~~~~~ 557 (588)
++|++|+|++|+|.+. .+..|..+++|++|+|++|.++. ...+..+++.
T Consensus 78 ---~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~ 130 (170)
T 3g39_A 78 ---TQLTQLSLNDNQLKSI----------PRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ 130 (170)
T ss_dssp ---TTCCEEECCSSCCCCC----------CTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred ---CCCCEEECCCCccCEe----------CHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence 9999999999999977 34568899999999999998863 3345555543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=6.3e-10 Score=99.98 Aligned_cols=116 Identities=18% Similarity=0.088 Sum_probs=86.7
Q ss_pred CccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHH
Q 007838 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML 495 (588)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 495 (588)
.-+.+++++|.++.. +..+ .++|+.|+|++|.|+... ...+..+++|++|+|++|+|+......+..
T Consensus 13 ~~~~l~~~~n~l~~i-----P~~~--~~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-- 79 (174)
T 2r9u_A 13 DQTLVNCQNIRLASV-----PAGI--PTDKQRLWLNNNQITKLE----PGVFDHLVNLQQLYFNSNKLTAIPTGVFDK-- 79 (174)
T ss_dssp CSSEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTTTTTT--
T ss_pred CCcEEEeCCCCCCcc-----CCCc--CCCCcEEEeCCCCccccC----HHHhcCCcCCCEEECCCCCCCccChhHhCC--
Confidence 347899999988642 2222 278999999999987642 233456789999999999998865544444
Q ss_pred hcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh----HHHHHHHHH
Q 007838 496 RYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG----AKCLAQSFK 556 (588)
Q Consensus 496 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~l~~~~~ 556 (588)
.++|++|+|++|+|.+. .+..+..+++|++|+|++|.+.. ...+..++.
T Consensus 80 --l~~L~~L~L~~N~l~~l----------~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~ 132 (174)
T 2r9u_A 80 --LTQLTQLDLNDNHLKSI----------PRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132 (174)
T ss_dssp --CTTCCEEECCSSCCCCC----------CTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred --cchhhEEECCCCcccee----------CHHHhccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence 49999999999999966 33458899999999999999873 333555554
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=2.3e-09 Score=96.20 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=79.8
Q ss_pred CcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHh
Q 007838 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (588)
Q Consensus 389 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (588)
-+.+++++|.++. ++..+ .++|++|+|++|+|+.. ....+..+++|++|+|++|.|+.... ..+.
T Consensus 14 ~~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTAIPT----GVFD 78 (174)
T ss_dssp SSEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTT
T ss_pred CcEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCccCh----hHhC
Confidence 4789999998875 33322 27899999999998754 23445667999999999998876422 2235
Q ss_pred hCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
.+++|++|+|++|+|+......+.. .++|++|+|++|.+...
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~----l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDN----LKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTT----CTTCSEEECCSSCBCTT
T ss_pred CcchhhEEECCCCccceeCHHHhcc----ccCCCEEEeCCCCcccc
Confidence 5689999999999998765544444 48999999999998855
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.71 E-value=2.5e-09 Score=95.60 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=90.1
Q ss_pred CCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHH
Q 007838 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (588)
Q Consensus 388 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (588)
..+.+++++|.++. ++..+ .++|++|+|++|+|+... ...+..+++|++|+|++|.|+.... ..+
T Consensus 10 ~~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKLE----PGVFDRLTQLTRLDLDNNQLTVLPA----GVF 74 (170)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCT----TTT
T ss_pred CCCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCccC----hhhhcCcccCCEEECCCCCcCccCh----hhc
Confidence 35789999998876 23222 368999999999888542 3345566899999999998876432 223
Q ss_pred hhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhccc
Q 007838 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML 536 (588)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~ 536 (588)
..+++|++|+|++|+|+......+.. +++|++|+|++|.+... |+.+..+...+...+.+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~c~----c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDN----LKSLTHIWLLNNPWDCA----CSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCBCTT----BGGGHHHHHHHHHCGGGE
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcC----CCCCCEEEeCCCCCCCC----chhHHHHHHHHHhCccee
Confidence 55689999999999988765544444 48999999999998865 445566666666555544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=1.7e-08 Score=101.47 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=76.8
Q ss_pred cEEEeeCC-cCCHHHHHHHHHHHhcCCCcCEEECcC-CCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHH
Q 007838 418 TTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML 495 (588)
Q Consensus 418 ~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 495 (588)
..++++++ +++. ++. +..+++|+.|+|++ |.|+.... ..+..+++|++|+|++|+|+...+..|..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l- 79 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLEL----RDLRGLGELRNLTIVKSGLRFVAPDAFHFT- 79 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEECG----GGSCSCCCCSEEECCSSCCCEECTTGGGSC-
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcCh----hHhccccCCCEEECCCCccceeCHHHhcCC-
Confidence 45688887 7774 455 67778899999986 88876432 234566889999999999888766555444
Q ss_pred hcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 496 RYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 496 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
++|++|+|++|+|.+. .+..+..++ |+.|+|.+|.+..
T Consensus 80 ---~~L~~L~l~~N~l~~~----------~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 80 ---PRLSRLNLSFNALESL----------SWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ---SCCCEEECCSSCCSCC----------CSTTTCSCC-CCEEECCSSCCCC
T ss_pred ---cCCCEEeCCCCcccee----------CHHHcccCC-ceEEEeeCCCccC
Confidence 8999999999998866 223344444 8999999998864
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=8e-09 Score=105.70 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHh
Q 007838 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (588)
Q Consensus 247 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l 326 (588)
+|+.+.+..+ ++..+..++. . .+|+.+.+.. .+...+ ..++..|.+|+.+++..|.++..+... +
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~----~-~~L~~i~lp~-~l~~I~----~~aF~~c~~L~~l~l~~n~l~~I~~~a----F 200 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFF----N-STVQEIVFPS-TLEQLK----EDIFYYCYNLKKADLSKTKITKLPAST----F 200 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTT----T-CCCCEEECCT-TCCEEC----SSTTTTCTTCCEEECTTSCCSEECTTT----T
T ss_pred CccEEEeCCC-ccEECHHhcC----C-CCceEEEeCC-CccEeh----HHHhhCcccCCeeecCCCcceEechhh----E
Confidence 5777776654 4433322221 2 2466666654 222111 122334556666666555544433221 1
Q ss_pred hcCCCCCEEEcc
Q 007838 327 EGNKSLRELHLH 338 (588)
Q Consensus 327 ~~~~~L~~L~Ls 338 (588)
. +.+|+.+.+.
T Consensus 201 ~-~~~L~~l~lp 211 (401)
T 4fdw_A 201 V-YAGIEEVLLP 211 (401)
T ss_dssp T-TCCCSEEECC
T ss_pred e-ecccCEEEeC
Confidence 1 3455555554
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.29 E-value=9e-08 Score=96.18 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=77.9
Q ss_pred cEEEccCC-CCChHHHHHHHHHHhhCCCccEEEeeC-CcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHH
Q 007838 390 LWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGG-NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (588)
Q Consensus 390 ~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (588)
..++++++ .++. ++. +..+.+|++|+|++ |.|+.. ....+..+++|+.|+|++|.|+.... ..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFVAP----DAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEECT----TGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccceeCH----HHh
Confidence 45688887 7776 556 77778899999996 888754 22345667999999999998876532 334
Q ss_pred hhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcc
Q 007838 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (588)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 514 (588)
..+++|++|+|++|+|+......+.. ..|+.|+|.+|.+...
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~-----~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQG-----LSLQELVLSGNPLHCS 118 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCS-----CCCCEEECCSSCCCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHccc-----CCceEEEeeCCCccCC
Confidence 56789999999999988765443322 2399999999998855
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.13 E-value=8.1e-08 Score=98.21 Aligned_cols=270 Identities=14% Similarity=0.136 Sum_probs=170.2
Q ss_pred CCCCCEEEecCCCCChhHHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHH
Q 007838 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (588)
Q Consensus 245 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~ 324 (588)
+..++.+.+.+. ++..+...+ .++ +|+.+.+..+ +...+-. ++.+ .+|+++.+.. .++..+. .
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF----~~~-~L~~i~l~~~-i~~I~~~----aF~~-~~L~~i~lp~-~l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAF----RNS-QIAKVVLNEG-LKSIGDM----AFFN-STVQEIVFPS-TLEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTT----TTC-CCSEEECCTT-CCEECTT----TTTT-CCCCEEECCT-TCCEECS----S
T ss_pred cCCccEEEECCc-cCEehHhhc----ccC-CccEEEeCCC-ccEECHH----hcCC-CCceEEEeCC-CccEehH----H
Confidence 467778877653 444332223 233 6999999876 4322212 2233 4799999976 3443332 2
Q ss_pred HhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHH
Q 007838 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (588)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 404 (588)
++..|++|+.+++.+|.+..-+...+ . +.+|+.+.+..+ +...+ ..++..|++|+.+++..+ ++..+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF-----~-~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTF-----V-YAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTT-----T-TCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEECT
T ss_pred HhhCcccCCeeecCCCcceEechhhE-----e-ecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCccc
Confidence 36689999999999988775433333 2 468999999854 44432 134578999999999875 333211
Q ss_pred HHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHH-HHHHHhhCCCccEEEcccCCC
Q 007838 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA-LSEVLKFHGNINTLKLGWCQI 483 (588)
Q Consensus 405 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~L~~L~L~~n~i 483 (588)
.++.. ++|+.+.+..+ ++..+ ..++..|++|+.+++.+|.+....... -...+..|++|+.++|. +.+
T Consensus 243 ----~aF~~-~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 243 ----EAFRE-SGITTVKLPNG-VTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp ----TTTTT-CCCSEEEEETT-CCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred ----ccccc-CCccEEEeCCC-ccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 12333 78999999553 43221 234667899999999887654110000 11244667899999998 446
Q ss_pred ChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccc
Q 007838 484 GASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALT 563 (588)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~ 563 (588)
+..+... +..|++|+.++|..| +... -...|.++ +|+.+++++|.+... ....+..+...++
T Consensus 312 ~~I~~~a----F~~c~~L~~l~lp~~-l~~I----------~~~aF~~~-~L~~l~l~~n~~~~l--~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 312 RILGQGL----LGGNRKVTQLTIPAN-VTQI----------NFSAFNNT-GIKEVKVEGTTPPQV--FEKVWYGFPDDIT 373 (401)
T ss_dssp CEECTTT----TTTCCSCCEEEECTT-CCEE----------CTTSSSSS-CCCEEEECCSSCCBC--CCSSCCCSCTTCC
T ss_pred EEEhhhh----hcCCCCccEEEECcc-ccEE----------cHHhCCCC-CCCEEEEcCCCCccc--ccccccCCCCCcc
Confidence 6665544 445699999999655 5543 34678888 999999999986543 1223333334678
Q ss_pred eeeccCCcc
Q 007838 564 SIDLAFNEI 572 (588)
Q Consensus 564 ~L~ls~N~i 572 (588)
.|.+..+.+
T Consensus 374 ~l~vp~~~~ 382 (401)
T 4fdw_A 374 VIRVPAESV 382 (401)
T ss_dssp EEEECGGGH
T ss_pred EEEeCHHHH
Confidence 888877764
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=7.2e-06 Score=78.02 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=48.5
Q ss_pred hhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchh
Q 007838 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (588)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 547 (588)
..+++|+.|+|++|+|+.... +...+..+++|+.|+|++|+|.+. .. ...+..+ +|++|+|++|.+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~--l~~~~~~l~~L~~L~Ls~N~i~~~--------~~-l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSE--------RE-LDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG--GTTHHHHSTTCCEEECTTSCCCSG--------GG-GGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCcc--chhHHhhCCCCCEEECCCCccCCc--------hh-hhhcccC-CcceEEccCCcCcc
Confidence 345677777777777766321 111222347777777777777754 00 1222233 77777777777764
Q ss_pred -----HHHHHHHHHhhhhccceee
Q 007838 548 -----AKCLAQSFKVVNEALTSID 566 (588)
Q Consensus 548 -----~~~l~~~~~~~~~~L~~L~ 566 (588)
..+....+... ++|+.||
T Consensus 235 ~~~~~~~y~~~il~~~-P~L~~LD 257 (267)
T 3rw6_A 235 TFRDQSTYISAIRERF-PKLLRLD 257 (267)
T ss_dssp GCSSHHHHHHHHHHHC-TTCCEES
T ss_pred ccCcchhHHHHHHHHC-cccCeEC
Confidence 12333445545 7777776
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=6.3e-06 Score=78.44 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=19.5
Q ss_pred CCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCCh
Q 007838 357 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (588)
Q Consensus 357 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 401 (588)
.+++|+.|+|++|.|+... .++..+..+++|+.|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCC
Confidence 3444555555555444310 022233445555555555555544
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.84 E-value=6.7e-08 Score=98.99 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=43.7
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHH
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (588)
..+..|+.+.+..+...-. ..++..+..++.+.+....+.+. .+..|.+|+.+.+..+ +...+.
T Consensus 250 ~~~~~l~~~~~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~i~~~-------~F~~~~~L~~i~l~~~-i~~I~~--- 313 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIG-----GSLFYNCSGLKKVIYGSVIVPEK-------TFYGCSSLTEVKLLDS-VKFIGE--- 313 (394)
T ss_dssp TTCSSCCEEEECCTTCEEC-----SCTTTTCTTCCEEEECSSEECTT-------TTTTCTTCCEEEECTT-CCEECT---
T ss_pred cccccceeEEcCCCcceee-----ccccccccccceeccCceeeccc-------cccccccccccccccc-cceech---
Confidence 4455566665554422110 01233445555555554433322 2334455666555443 211111
Q ss_pred HHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecC
Q 007838 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (588)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 509 (588)
..+..|.+|+.++|..+ ++..+..+ +..|++|+.+++..+
T Consensus 314 -~aF~~c~~L~~i~lp~~-v~~I~~~a----F~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 314 -EAFESCTSLVSIDLPYL-VEEIGKRS----FRGCTSLSNINFPLS 353 (394)
T ss_dssp -TTTTTCTTCCEECCCTT-CCEECTTT----TTTCTTCCEECCCTT
T ss_pred -hhhcCCCCCCEEEeCCc-ccEEhHHh----ccCCCCCCEEEECcc
Confidence 12234455555555422 33333222 333455555555443
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=2.5e-07 Score=94.69 Aligned_cols=217 Identities=11% Similarity=0.083 Sum_probs=116.7
Q ss_pred HhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHH
Q 007838 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (588)
Q Consensus 298 l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (588)
+..|.+|+.+.+..+. ...+. .++..|++|+.+++..+ +...+ ......+..|+.+.+..+...-
T Consensus 158 F~~c~~L~~i~l~~~~-~~I~~----~~F~~c~~L~~i~l~~~-~~~I~-----~~~F~~~~~L~~i~~~~~~~~i---- 222 (394)
T 4fs7_A 158 FATCESLEYVSLPDSM-ETLHN----GLFSGCGKLKSIKLPRN-LKIIR-----DYCFAECILLENMEFPNSLYYL---- 222 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECT----TTTTTCTTCCBCCCCTT-CCEEC-----TTTTTTCTTCCBCCCCTTCCEE----
T ss_pred hcccCCCcEEecCCcc-ceecc----ccccCCCCceEEEcCCC-ceEeC-----chhhccccccceeecCCCceEe----
Confidence 3456667776665442 11111 12445667777776554 21111 1111345566666665542211
Q ss_pred HHHHHHhcCCCCcEEEccCC--CCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCC
Q 007838 378 HVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (588)
Q Consensus 378 ~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (588)
......+.+|+.+.+... .+.+ .++..+..|+.+.+..+...- -...+..++.++.+.+..+.+
T Consensus 223 --~~~~~~~~~l~~i~ip~~~~~i~~-------~~f~~~~~l~~~~~~~~~~~i-----~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 223 --GDFALSKTGVKNIIIPDSFTELGK-------SVFYGCTDLESISIQNNKLRI-----GGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp --CTTTTTTCCCCEEEECTTCCEECS-------STTTTCSSCCEEEECCTTCEE-----CSCTTTTCTTCCEEEECSSEE
T ss_pred --ehhhcccCCCceEEECCCceeccc-------ccccccccceeEEcCCCccee-----eccccccccccceeccCceee
Confidence 111234567777777553 2222 134456788888877653220 012344567777777766654
Q ss_pred ChHHHHHHHHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcc
Q 007838 456 GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHM 535 (588)
Q Consensus 456 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L 535 (588)
.+. .+..+.+|+.+.+..+ ++..+..+ +..|++|+.++|.++ +... -..+|.+|.+|
T Consensus 289 ~~~-------~F~~~~~L~~i~l~~~-i~~I~~~a----F~~c~~L~~i~lp~~-v~~I----------~~~aF~~c~~L 345 (394)
T 4fs7_A 289 PEK-------TFYGCSSLTEVKLLDS-VKFIGEEA----FESCTSLVSIDLPYL-VEEI----------GKRSFRGCTSL 345 (394)
T ss_dssp CTT-------TTTTCTTCCEEEECTT-CCEECTTT----TTTCTTCCEECCCTT-CCEE----------CTTTTTTCTTC
T ss_pred ccc-------cccccccccccccccc-cceechhh----hcCCCCCCEEEeCCc-ccEE----------hHHhccCCCCC
Confidence 432 2345678888887553 44443333 445688888888643 4322 23567788888
Q ss_pred cchhhhhccchhHHHHHHHHHhhhhccceeeccCC
Q 007838 536 LFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFN 570 (588)
Q Consensus 536 ~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~N 570 (588)
+.++|..| ++.. -..++..+ .+|++++|..+
T Consensus 346 ~~i~lp~~-l~~I--~~~aF~~C-~~L~~i~lp~~ 376 (394)
T 4fs7_A 346 SNINFPLS-LRKI--GANAFQGC-INLKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEE--CTTTBTTC-TTCCEEEEEGG
T ss_pred CEEEECcc-ccEe--hHHHhhCC-CCCCEEEECCC
Confidence 88888765 4432 12345544 67888888654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.12 E-value=8.4e-06 Score=83.26 Aligned_cols=316 Identities=10% Similarity=0.104 Sum_probs=158.9
Q ss_pred hhcCC-CccEEEeecCCCCHHHHHHHHHHHhcCCCccEEEccCCC---CChHHHHHHHHHHhhCCCCCEEEecCCCCChh
Q 007838 186 LGYNQ-TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP---IGDEGVKCLCDILVDNAGVERLQLSSVDLRDE 261 (588)
Q Consensus 186 l~~~~-~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~ 261 (588)
+..|+ .|+++.+... ++..+-. ++..|.+|+.+.+..|. +...+ ...+..|..|+.+.+..+ ++..
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~----AF~~C~~L~~i~~~~n~p~~l~~Ig----~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSN----AFYNCTSLKRVTIQDNKPSCVKKIG----RQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTT----TTTTCTTCCEEEEGGGCCCCCCEEC----TTTTTTCTTCCBCGGGTT-CSEE
T ss_pred ccCCCCcCEEEEECCC-eeEEhHH----HhhCCccCceEeecCCCCCeeeEec----hhhchhcccceeeccCCc-ccee
Confidence 44454 5899998764 4433332 34677889999887652 33222 123455677777766543 2222
Q ss_pred HHHHHHHHHhhCCCccEEEeeccCCChhhHHHHHHHHhhCCCcceeecCCCCCChhHHHHHHHHhhcCCCCCEEEccCCC
Q 007838 262 GAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341 (588)
Q Consensus 262 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 341 (588)
+. ..+..+..|+.+.+..+. ...+ ..++..|..|+.+.+..+ ++..+... + .+..|+.+.+..+-
T Consensus 129 ~~----~aF~~c~~L~~i~lp~~~-~~I~----~~~F~~c~~L~~i~~~~~-~~~I~~~a----F-~~~~l~~i~ip~~~ 193 (394)
T 4gt6_A 129 DS----EAFHHCEELDTVTIPEGV-TSVA----DGMFSYCYSLHTVTLPDS-VTAIEERA----F-TGTALTQIHIPAKV 193 (394)
T ss_dssp CT----TTTTTCTTCCEEECCTTC-CEEC----TTTTTTCTTCCEEECCTT-CCEECTTT----T-TTCCCSEEEECTTC
T ss_pred hh----hhhhhhccccccccccee-eeec----ccceecccccccccccce-eeEecccc----c-cccceeEEEECCcc
Confidence 11 123456778888776542 1111 123345777777777654 22222111 2 23567777776542
Q ss_pred CChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHH----------HHHhcCCCCcEEEccCC--CCChHHHHHHHH
Q 007838 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA----------EYIKNCKSLLWINLYMN--DIGDEGAEKIAD 409 (588)
Q Consensus 342 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----------~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~ 409 (588)
. ..+...+ ..+..++.............-. +. ........+..+.+... .+.+ .
T Consensus 194 ~-~i~~~af-----~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~-------~ 259 (394)
T 4gt6_A 194 T-RIGTNAF-----SECFALSTITSDSESYPAIDNV-LYEKSANGDYALIRYPSQREDPAFKIPNGVARIET-------H 259 (394)
T ss_dssp C-EECTTTT-----TTCTTCCEEEECCSSSCBSSSC-EEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT-------T
T ss_pred c-ccccchh-----hhccccceecccccccccccce-eecccccccccccccccccccceEEcCCcceEccc-------c
Confidence 1 1111111 3445566665543322110000 00 00001122333443322 1111 2
Q ss_pred HHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCCCChhHHH
Q 007838 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (588)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (588)
++..+..|+.+.+..+..+ .+ ..++..|+.|+.+.+..+ +...+. ..+..|.+|+.++|..+ ++..+..
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~----~~aF~~c~~L~~i~l~~~-i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IG----TGAFMNCPALQDIEFSSR-ITELPE----SVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-EC----TTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eeeecccccEEecccccce-ec----CcccccccccccccCCCc-ccccCc----eeecCCCCcCEEEeCCc-ccEehHh
Confidence 4566788888888665321 11 123556788888888643 332211 23456788999988654 4444433
Q ss_pred HHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccchhHHHHHHHHHhhhhccceeeccC
Q 007838 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF 569 (588)
Q Consensus 490 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~~~~~~~~~L~~L~ls~ 569 (588)
++..|++|+++.|..+ +... -..+|.+|++|+.+++.++.... ..+... ..|+.+++..
T Consensus 329 ----aF~~C~~L~~i~ip~s-v~~I----------~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~-~~L~~i~i~~ 387 (394)
T 4gt6_A 329 ----AFAGCEQLERIAIPSS-VTKI----------PESAFSNCTALNNIEYSGSRSQW-----NAISTD-SGLQNLPVAP 387 (394)
T ss_dssp ----TTTTCTTCCEEEECTT-CCBC----------CGGGGTTCTTCCEEEESSCHHHH-----HTCBCC-CCC-------
T ss_pred ----HhhCCCCCCEEEECcc-cCEE----------hHhHhhCCCCCCEEEECCceeeh-----hhhhcc-CCCCEEEeCC
Confidence 3555689999988654 4433 24678899999999999876432 223323 6788888887
Q ss_pred Ccc
Q 007838 570 NEI 572 (588)
Q Consensus 570 N~i 572 (588)
|.+
T Consensus 388 ~~~ 390 (394)
T 4gt6_A 388 GSI 390 (394)
T ss_dssp ---
T ss_pred CCE
Confidence 754
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.53 E-value=0.076 Score=53.60 Aligned_cols=129 Identities=10% Similarity=0.132 Sum_probs=63.9
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHHHHHHhcCCCCceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEccCCCCChHHHH
Q 007838 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (588)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 405 (588)
+..|..|+.+.+..+.. .. ....+..+..|+.+.+... ++..+ ..++..|.+|+.++|..+ ++..+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I-----~~~aF~~c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~-- 326 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SI-----GTGAFMNCPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEG-ITQIL-- 326 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EE-----CTTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTT-CCEEC--
T ss_pred eeecccccEEecccccc-ee-----cCcccccccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCc-ccEeh--
Confidence 45677777777755422 11 1111135567777777542 32221 123466777888877654 22211
Q ss_pred HHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCC
Q 007838 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (588)
Q Consensus 406 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (588)
..++..|.+|+.+.|..+ ++..+ ..++..|++|+.+++.++.. ....+..+.+|+.+.+..+.
T Consensus 327 --~~aF~~C~~L~~i~ip~s-v~~I~----~~aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 327 --DDAFAGCEQLERIAIPSS-VTKIP----ESAFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCBCC----GGGGTTCTTCCEEEESSCHH-------HHHTCBCCCCC---------
T ss_pred --HhHhhCCCCCCEEEECcc-cCEEh----HhHhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCC
Confidence 124556777888877554 32211 12456677888888776621 11334556677777765544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.52 E-value=0.15 Score=42.24 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=20.3
Q ss_pred cccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhccc
Q 007838 500 TISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYL 545 (588)
Q Consensus 500 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l 545 (588)
+|++|+|++|+|+.. -+..|..+++|+.|+|++|-+
T Consensus 32 ~l~~L~Ls~N~l~~l----------~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL----------PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSC----------CTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCcc----------ChhhhhhccccCEEEecCCCe
Confidence 456666666666544 234455556666666666654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.98 E-value=0.06 Score=53.97 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=76.3
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHHHHHhhCCCccEEEeeCCcCCHHHHHHHHHHHhcCCCcCEEECcCCCCChHHHHHH
Q 007838 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (588)
Q Consensus 384 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (588)
..+.+|+.+.+..+ +...+ ..++..+..|+.+.+..+ ++..+. .++..|..|+.+.+..+ +...+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~----~~~f~~~~~L~~i~lp~~-v~~I~~----~aF~~~~~l~~i~l~~~-i~~i~~--- 279 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLG----DGAFYGMKALDEIAIPKN-VTSIGS----FLLQNCTALKTLNFYAK-VKTVPY--- 279 (379)
T ss_dssp TTCSSCSEEECCTT-CCEEC----TTTTTTCSSCCEEEECTT-CCEECT----TTTTTCTTCCEEEECCC-CSEECT---
T ss_pred ccccccceeeeccc-eeEEc----cccccCCccceEEEcCCC-ccEeCc----cccceeehhcccccccc-ceeccc---
Confidence 45677888877654 22211 123456678888888665 322111 23455678888887654 222211
Q ss_pred HHHHhhCCCccEEEcccCCCChhHHHHHHHHHhcCCcccEEEeecCCCCcccccCCCCchhhhhhHhhhhcccchhhhhc
Q 007838 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (588)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n 543 (588)
..+..|.+|+.+.+.++.++..+... +..|++|+.++|..+ +... -..+|.+|.+|+.+.+..+
T Consensus 280 -~aF~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~-l~~I----------~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 -LLCSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTA-LKTI----------QVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp -TTTTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTT-CCEE----------CTTTTTTCTTCCCCCCCTT
T ss_pred -cccccccccccccccccccceehhhh----hcCCCCCCEEEcCcc-ccEE----------HHHHhhCCCCCCEEEECCc
Confidence 23355678888888777776655443 445588888888643 3322 1356777788888777544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.01 E-value=0.17 Score=41.94 Aligned_cols=35 Identities=26% Similarity=0.114 Sum_probs=15.5
Q ss_pred CcCEEECcCCCCChHHHHHHHHHHhhCCCccEEEcccCC
Q 007838 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (588)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (588)
+|+.|+|++|.|+..... .+..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPG----LLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChh----hhhhccccCEEEecCCC
Confidence 455555555554432211 12233445555555544
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.00 E-value=0.093 Score=52.54 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.6
Q ss_pred hhcCCCccEEEee
Q 007838 186 LGYNQTAEEVSFA 198 (588)
Q Consensus 186 l~~~~~L~~L~L~ 198 (588)
+..|.+|++++|.
T Consensus 65 F~~C~~L~~I~lp 77 (379)
T 4h09_A 65 FNSCYNMTKVTVA 77 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred hhCCCCCCEEEeC
Confidence 3345555555554
Done!