BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007840
(587 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/587 (71%), Positives = 486/587 (82%), Gaps = 9/587 (1%)
Query: 1 MGASYLVISAASTILSFVGLQFWTEFSLDKLRTDGLVVENVIHLESANRVLELLLRSYAT 60
MG YL +S AST LSFVGLQ WTE SLD+LR DGL+ +N I L + LELLL SY T
Sbjct: 1 MGIKYLPVSVASTALSFVGLQVWTELSLDRLRADGLIAKN-ISLGDSEHALELLLGSYFT 59
Query: 61 VALLANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQ 120
+ALL NFVLNV++L+ L LKT+FFG+LY ET+K VERL NY+IYKGTFLPLVIPPT+FQ
Sbjct: 60 IALLTNFVLNVYILLVLSLKTLFFGDLYDVETKKLVERLANYIIYKGTFLPLVIPPTIFQ 119
Query: 121 AGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMC 180
LW+VWLTVLC+LKMFQALARDRLERLNASPS+TPWTYFRV+S L VL+VD+FWI++
Sbjct: 120 GVLWTVWLTVLCTLKMFQALARDRLERLNASPSSTPWTYFRVYSVLFLVLSVDMFWIKLS 179
Query: 181 LLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDT 240
L+ + T+ S+++LLL FEP S+AFET+QA+L+HGFQLLD+W++H A +++C RSKF D+
Sbjct: 180 LMTYNTIGSAVYLLLLFEPCSIAFETLQALLIHGFQLLDMWINHLAVKNSDCQRSKFIDS 239
Query: 241 LAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLS 300
+ AGSLLEWKG+L RN GFFLDMATL+MALGHY+HIWWL G+AFHLVDA+LFLNIRALLS
Sbjct: 240 MTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWWLHGIAFHLVDAVLFLNIRALLS 299
Query: 301 AIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLA 360
AI+KRIKG+IKLRIALG LHAALPDATSEELRAYDDECAICREPMAKAK+L CNHLFHL
Sbjct: 300 AILKRIKGYIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLFHLG 359
Query: 361 CLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTG 420
CLRSWLDQGLNE+YSCPTCRKPLFVGR E E N R EVSSDEQLARQ L+RQNN
Sbjct: 360 CLRSWLDQGLNEVYSCPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQ----LERQNNPV 415
Query: 421 QTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRSVGLSRVQMMM 480
L TG+FP + VE RN GLD SWL W SQG D AGPST R+VGL RVQMMM
Sbjct: 416 HALATGLFPAEVPDSVENDTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQMMM 475
Query: 481 RHLASVGETYAQTAIEDTSWSLWPMNPSQASASGSPVPPAVPGRHPGNTGGAHARSTSRS 540
RHLASVGE+YAQTA++D +WSLWPMNPSQAS S + VPP GR TGG H R+ S +
Sbjct: 476 RHLASVGESYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNGGR----TGGLHLRTVSNT 531
Query: 541 ANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQM 587
NE++ NILAMAETVREV+PH+P+++IFQDLQRTNS +TVNNLLQM
Sbjct: 532 TNESLTNILAMAETVREVMPHVPDEIIFQDLQRTNSVAVTVNNLLQM 578
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/587 (68%), Positives = 483/587 (82%), Gaps = 10/587 (1%)
Query: 1 MGASYLVISAASTILSFVGLQFWTEFSLDKLRTDGLVVENVIHLESANRVLELLLRSYAT 60
MG +YL IS A+T LSFVGLQ WTE SLD+LR DG++ +N I L ++ LELLL S+ T
Sbjct: 1 MGITYLHISVATTALSFVGLQVWTELSLDRLRADGIITKN-ISLGNSENTLELLLSSHTT 59
Query: 61 VALLANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQ 120
+ALLA+FVLN+++L+ L LKT+FFG+LY ETRK VERL NY+IYKGTFLP V+P TVFQ
Sbjct: 60 IALLASFVLNIYILLVLSLKTLFFGDLYAIETRKLVERLANYIIYKGTFLPFVVPRTVFQ 119
Query: 121 AGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMC 180
LW++WLTVLC+LKMFQALARDRL+RLNASPS+TPWTYFRV+SAL VL+ D+ WI++
Sbjct: 120 GVLWTIWLTVLCTLKMFQALARDRLDRLNASPSSTPWTYFRVYSALFMVLSTDLCWIKLS 179
Query: 181 LLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDT 240
L+++ T+ SS++LLL FEP +AFET+QA+L+HGFQLLD+W++H A +++C RSKF+D+
Sbjct: 180 LMIYNTVGSSVYLLLLFEPCGIAFETLQALLIHGFQLLDMWINHLAVKNSDCQRSKFYDS 239
Query: 241 LAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLS 300
+ AGSLLEWKG+L RN GFFLDMATL+MALGHY+HIWWL GMAFHLVDA+LFLNIRALLS
Sbjct: 240 MTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWWLHGMAFHLVDAVLFLNIRALLS 299
Query: 301 AIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLA 360
+I+KRIKG+IKLR+ALG LHAAL DATSEELR YDDECAICREPMAKAK+L CNHLFHL
Sbjct: 300 SILKRIKGYIKLRVALGALHAALLDATSEELRDYDDECAICREPMAKAKRLHCNHLFHLG 359
Query: 361 CLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTG 420
CLRSWLDQGLNE+YSCPTCRKPLFVGR E EAN GEVSSDE LARQ +RQNN+
Sbjct: 360 CLRSWLDQGLNEVYSCPTCRKPLFVGRTESEANPSRGEVSSDEHLARQ----FERQNNSV 415
Query: 421 QTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRSVGLSRVQMMM 480
L TG+FP +T E PWRN+ +D SWL W QGVD G S RSVGL +VQ+MM
Sbjct: 416 HALTTGMFPTETPNFTESDPWRNSEVDPSWLQTWSDQGVDVVGSSAGSRSVGLGQVQLMM 475
Query: 481 RHLASVGETYAQTAIEDTSWSLWPMNPSQASASGSPVPPAVPGRHPGNTGGAHARSTSRS 540
RHLASVGE AQT ++D SW LWPMNPSQAS S + VPP GR TGG H R+ SR+
Sbjct: 476 RHLASVGEGSAQTTLDDASWGLWPMNPSQASTSSTYVPPGAGGR----TGGLHLRTVSRA 531
Query: 541 ANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQM 587
AN N+A+ILAMAETVREVLPH+P+++IFQDLQRTNS ++TVNNLLQM
Sbjct: 532 AN-NMASILAMAETVREVLPHVPDEIIFQDLQRTNSVSVTVNNLLQM 577
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 161/364 (44%), Gaps = 31/364 (8%)
Query: 47 ANRVLELLLRSYATVALLANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYK 106
A V + LL V +L N V +L+ ++ I FG L +E + ++ N++ YK
Sbjct: 70 ARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFWNFIFYK 129
Query: 107 GTFLPLVIP-PTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSA 165
F+ V+ TV + +W +W L L + L +DR E L+ SP+ ++ RV S
Sbjct: 130 FIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSL 189
Query: 166 LLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHS 225
L+ +L +C + T + E L V T IL + L D L+H
Sbjct: 190 LIAMLLSCCGLAVVCCVTGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIHLWD--LNHE 247
Query: 226 AGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFH 285
E KG + F +++A L + L H+IH+ +
Sbjct: 248 GT-------------------WEGKGTYVYYTDFVMELALLSLDLMHHIHMLLFGNIWLS 288
Query: 286 LVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM 345
+ ++F+ +R L + +RI+ +G++ A AT EEL +D+CAIC + M
Sbjct: 289 MASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSM 348
Query: 346 AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQL 405
A+KL C HLFH +CLRSWL+Q SCPTCR L I SR E E L
Sbjct: 349 QAARKLPCGHLFHNSCLRSWLEQD----TSCPTCRMSL-----NIADGSRAREDHQGENL 399
Query: 406 ARQL 409
L
Sbjct: 400 DENL 403
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 550 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 586
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 459 AMAHQIQEMFPQVPYHLVLQDLQMTRSVEITTDNILE 495
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 161/364 (44%), Gaps = 31/364 (8%)
Query: 47 ANRVLELLLRSYATVALLANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYK 106
A V + LL V +L N V +L+ ++ I FG L +E + ++ N++ YK
Sbjct: 70 ARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFWNFIFYK 129
Query: 107 GTFLPLVIP-PTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSA 165
F+ V+ TV + +W +W L L + L +DR E L+ SP+ ++ RV S
Sbjct: 130 FIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSL 189
Query: 166 LLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHS 225
L+ +L +C + T + E L V T IL + L D L+H
Sbjct: 190 LVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIHLWD--LNHE 247
Query: 226 AGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFH 285
E KG + F +++ L + L H+IH+ +
Sbjct: 248 GT-------------------WEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLS 288
Query: 286 LVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM 345
+ ++F+ +R L + +RI+ +G++ A AT EEL +D+CAIC + M
Sbjct: 289 MASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSM 348
Query: 346 AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQL 405
A+KL C HLFH +CLRSWL+Q SCPTCR L I N+R E E L
Sbjct: 349 QAARKLPCGHLFHNSCLRSWLEQDT----SCPTCRMSL-----NIADNNRVREEHQGENL 399
Query: 406 ARQL 409
L
Sbjct: 400 DENL 403
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 550 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 586
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 459 AMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 495
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 54/338 (15%)
Query: 54 LLRSYATVALL--ANFVLNVFVLINLCLKTIFFGELYPAETRKFVER--------LINYV 103
L +S ++A+L FVL VF+L L ++ +FFG+L AE +ER + +
Sbjct: 36 LTKSSPSMAVLYIQAFVL-VFLLGKL-MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFT 93
Query: 104 IYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVF 163
+++ F P + T+L LK F LA DR++ + SP+ + +FRV
Sbjct: 94 VFRDDFSPRFV-----------ALFTLLLFLKCFHWLAEDRVDFMERSPNISWVFHFRVL 142
Query: 164 SALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLH 223
S ++ + +D ++ T +S+ L+ FE + + + + +D+
Sbjct: 143 SLMVLLGVMDFLFVNHACHSIITRGASVQLVFGFEYAILMTMVLTTFIKYTLHTIDL--- 199
Query: 224 HSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMA 283
S N A + L G + K +L ++ T+++ + H ++ +R M
Sbjct: 200 QSENPWDNKAVYMLYTELFTGFI---KVLL------YMAFMTIMIKV-HTFPLFAIRPM- 248
Query: 284 FHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICRE 343
+L +R A+ I R A+ +++ PDAT E+L+A D+ C ICRE
Sbjct: 249 --------YLAMRQFKKAVTDAIMS----RRAIRNMNTLYPDATPEDLQATDNVCIICRE 296
Query: 344 PMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380
M AKKL CNH+FH +CLRSW + +CPTCR
Sbjct: 297 EMVTGAKKLPCNHIFHSSCLRSWFQR----QQTCPTCR 330
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 56/339 (16%)
Query: 54 LLRSYATVALLANFVLNVFVLINLCLK---TIFFGELYPAETRKFVER--------LINY 102
L +S ++A+L + FVL+ L K +FFG+L AE +ER + +
Sbjct: 30 LTKSSPSMAIL---YIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAF 86
Query: 103 VIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRV 162
+++ F P + T+L LK F LA DR++ + SP+ + +FR+
Sbjct: 87 TVFRDDFSPRFV-----------ALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHFRI 135
Query: 163 FSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWL 222
+ +L + +D F++ T +S+ L+ FE + + +++ F + L
Sbjct: 136 LALMLLLGVLDAFFVSHAYNSLVTRGASVQLVFGFE-----YAILMTMILAVF--IKYIL 188
Query: 223 HHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGM 282
H S N +K L + +L+ ++ T+++ + H ++ +R M
Sbjct: 189 HSVDLQSENPWDNKAVYMLYTELFTGFIKVLL-----YMAFMTIMVKV-HTFPLFAIRPM 242
Query: 283 AFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICR 342
+L +R A+ + R A+ +++ PDAT+EEL+A D+ C ICR
Sbjct: 243 ---------YLAMRQFKKAVTDAVMS----RRAIRNMNTLYPDATAEELQAMDNVCIICR 289
Query: 343 EPM-AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380
E M + AK+L CNH+FH +CLRSW + +CPTCR
Sbjct: 290 EEMVSGAKRLPCNHIFHTSCLRSWFQR----QQTCPTCR 324
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 150/329 (45%), Gaps = 53/329 (16%)
Query: 64 LANFVLNVFVLINLCLK---TIFFGELYPAETRKFVER--------LINYVIYKGTFLPL 112
+A + FVL+ L K +FFG+L AE +ER + + +++ F P
Sbjct: 37 MAVLYIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPR 96
Query: 113 VIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAV 172
+ T+L LK F LA DR++ + SP+ + +FR+ + +L + +
Sbjct: 97 FV-----------ALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHFRILALMLLLGVL 145
Query: 173 DIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNC 232
D F++ +S+ L+ FE + + +++ F + LH S N
Sbjct: 146 DAFFVSHAYHSLVIRGASVQLVFGFE-----YAILMTVILTVF--IKYILHSVDLQSENP 198
Query: 233 ARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILF 292
+K L + +L+ ++ T+++ + H ++ +R M +
Sbjct: 199 WDNKAVYMLYTELFTGFIKVLL-----YVAFMTIMVKV-HTFPLFAIRPM---------Y 243
Query: 293 LNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKL 351
L +R A+ I R A+ +++ PDAT+EEL+A D+ C ICRE M AK+L
Sbjct: 244 LAMRQFKKAVTDAIMS----RRAIRNMNTLYPDATAEELQAMDNVCIICREEMVTGAKRL 299
Query: 352 LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380
CNH+FH +CLRSW + +CPTCR
Sbjct: 300 PCNHIFHTSCLRSWFQR----QQTCPTCR 324
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 159/353 (45%), Gaps = 57/353 (16%)
Query: 64 LANFVLNVFVLINLCLKT---IFFGELYPAETRKFVER--------LINYVIYKGTFLPL 112
+A + FVL+ L K +FFG+L AE +ER + + +++ F P
Sbjct: 43 MAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPR 102
Query: 113 VIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAV 172
+ T+L LK F LA DR++ + SP+ + W + +L+F+L +
Sbjct: 103 FV-----------ALFTLLLFLKCFHWLAEDRVDFMERSPNIS-WLFHCRIVSLMFLLGI 150
Query: 173 -DIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTN 231
D ++ T +S+ L+ FE + + +++ F + LH S N
Sbjct: 151 LDFLFVSHAYHSILTRGASVQLVFGFE-----YAILMTMVLTIF--IKYVLHSVDLQSEN 203
Query: 232 CARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAIL 291
+K L + +L+ ++ T+++ + H ++ +R M
Sbjct: 204 PWDNKAVYMLYTELFTGFIKVLL-----YMAFMTIMIKV-HTFPLFAIRPM--------- 248
Query: 292 FLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKK 350
+L +R A+ I R A+ +++ PDAT EEL+A D+ C ICRE M AK+
Sbjct: 249 YLAMRQFKKAVTDAIMS----RRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKR 304
Query: 351 LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDE 403
L CNH+FH +CLRSW + +CPTCR + V R + A S P +D+
Sbjct: 305 LPCNHIFHTSCLRSWFQR----QQTCPTCR--MDVLRASLPAQSPPPPEPADQ 351
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 159/353 (45%), Gaps = 57/353 (16%)
Query: 64 LANFVLNVFVLINLCLKT---IFFGELYPAETRKFVER--------LINYVIYKGTFLPL 112
+A + FVL+ L K +FFG+L AE +ER + + +++ F P
Sbjct: 43 MAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPR 102
Query: 113 VIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAV 172
+ T+L LK F LA DR++ + SP+ + W + +L+F+L +
Sbjct: 103 FV-----------ALFTLLLFLKCFHWLAEDRVDFMERSPNIS-WLFHCRIVSLMFLLGI 150
Query: 173 -DIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTN 231
D ++ T +S+ L+ FE + + +++ F + LH S N
Sbjct: 151 LDFLFVSHAYHSILTRGASVQLVFGFE-----YAILMTMVLTIF--IKYVLHSVDLQSEN 203
Query: 232 CARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAIL 291
+K L + +L+ ++ T+++ + H ++ +R M
Sbjct: 204 PWDNKAVYMLYTELFTGFIKVLL-----YMAFMTIMIKV-HTFPLFAIRPM--------- 248
Query: 292 FLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKK 350
+L +R A+ I R A+ +++ PDAT EEL+A D+ C ICRE M AK+
Sbjct: 249 YLAMRQFKKAVTDAIMS----RRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKR 304
Query: 351 LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDE 403
L CNH+FH +CLRSW + +CPTCR + V R + A S P +D+
Sbjct: 305 LPCNHIFHTSCLRSWFQR----QQTCPTCR--MDVLRASLPAQSPPPPEPADQ 351
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 44/341 (12%)
Query: 54 LLRSYATVALL-ANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGTFLPL 112
L +S A++A++ ++ V+++ L LK+I FG+L AE ER + V L
Sbjct: 37 LSKSNASMAVIYVQGIVLVYLMFQL-LKSILFGDLRAAEAEHLSERTWHAV------LET 89
Query: 113 VIPPTVFQAGLWSVWLTVLCSL---KMFQALARDRLERLNASPSATPWTYFRVFSALLFV 169
+ TVF+ ++++ L K F LA DR++ + SP T + R+ + L +
Sbjct: 90 CLAFTVFRDDFSAIFVMQFIGLLFIKCFHWLADDRVDMMERSPVITLRFHLRMMTVLAAL 149
Query: 170 LAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNS 229
D +++ T +S ++ FE + + A+++H + LH +
Sbjct: 150 GFADSYFVSSAYFTTITRGASAQIVFGFE-----YAILLALVLHV--TIKYLLHMHDLRN 202
Query: 230 TNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDA 289
+K L A + L+ +GFF ++M H ++ +R
Sbjct: 203 PQSWDNKAVYLLYAELFINLIRCLL--YGFF----AVVMLRVHTFPLFSVRP-------- 248
Query: 290 ILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM---A 346
+ ++RAL A + I R A+ +++ P ++E+L A D C ICRE M A
Sbjct: 249 -FYQSVRALHKAFLDVILS----RRAINAMNSQFPVVSAEDLAAMDATCIICREEMTVDA 303
Query: 347 KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387
K+L C+H+FH CLRSW + +CPTCR ++ GR
Sbjct: 304 SPKRLPCSHVFHAHCLRSWFQR----QQTCPTCRTDIWQGR 340
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 48/343 (13%)
Query: 54 LLRSYATVALLA-NFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGTFLPL 112
L +S A++A+L ++ V+++ L LK+I FG+L AE ER + V L
Sbjct: 37 LSKSNASMAVLYFQGIVLVYLMFQL-LKSILFGDLRAAEAEHLSERTWHAV------LET 89
Query: 113 VIPPTVFQ---AGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFV 169
+ TVF+ + ++ + L +K F LA DR++ + SP T + R+ + L +
Sbjct: 90 CLAFTVFRDDFSAMFVMQFIGLLFIKCFHWLADDRVDMMERSPVITLRFHLRMMTVLAAL 149
Query: 170 LAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNS 229
D +++ T +S ++ FE + + A+++H + LH +
Sbjct: 150 GFADSYFVSSAYFSTITKGASSQIVFGFE-----YAILLALVLH--VTIKYLLHMHDLRN 202
Query: 230 TNCARSKFFDTLAAGSLLEWKGILIRN--FGFFLDMATLLMALGHYIHIWWLRGMAFHLV 287
+K L A L+ LIR +GFF ++M H ++ +R
Sbjct: 203 PQSWDNKAVYLLYAELLIN----LIRCVLYGFF----AVIMLRVHTFPLFSVRP------ 248
Query: 288 DAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM-- 345
+ ++RAL A + I R A+ +++ P +++EL A D C ICRE M
Sbjct: 249 ---FYQSVRALHKAFLDVILS----RRAINAMNSQFPVVSNDELSAMDATCIICREEMTV 301
Query: 346 -AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387
+ K+L C+H+FH CLRSW + +CPTCR ++ GR
Sbjct: 302 ESSPKRLPCSHVFHAHCLRSWFQR----QQTCPTCRTDIWQGR 340
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 135/327 (41%), Gaps = 57/327 (17%)
Query: 66 NFVLNVFVLINLCLKTIFFGELYPAETRKFVERL--------INYVIYKGTFLPLVIPPT 117
F + VF+ L L IF G L AE +ER + + +++ F P +
Sbjct: 47 QFFVIVFMFGKL-LSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPRFV--- 102
Query: 118 VFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWI 177
TVL LK F LA +R++ + SP W + +LL VL + +
Sbjct: 103 --------ALFTVLLFLKSFHWLAEERVDFMERSP-VLGWLFHIRVGSLLTVLGILDY-- 151
Query: 178 RMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKF 237
+LL +S++ V T+Q + + +L + +A A
Sbjct: 152 ---VLLIHAYNSTL----------VRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMR 198
Query: 238 FDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHL---VDAILFLN 294
DT W+ + F + ++ L+ + YI + + L V +F
Sbjct: 199 TDT-------PWENKAV--FLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFT 249
Query: 295 IRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLC 353
IR A+ I R A+ +++ PDAT EELR D+ C ICRE M +KKL C
Sbjct: 250 IRNFRKAL----NDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPC 305
Query: 354 NHLFHLACLRSWLDQGLNEMYSCPTCR 380
H+FH CLRSW + +CPTCR
Sbjct: 306 GHIFHTTCLRSWFQR----QQTCPTCR 328
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 110/479 (22%), Positives = 181/479 (37%), Gaps = 81/479 (16%)
Query: 66 NFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWS 125
N L +F I LKT+ FG L E E+ + T +++ TVF+ +
Sbjct: 47 NVCLCLFFAIANALKTLLFGSLQTFELELLYEQ------FWITLTEIMLAITVFREAISI 100
Query: 126 VWLTVLCSL---KMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAV-DIFWIRMCL 181
+ +L +L ++F ++ R ERL + + F + FVL++ D I +C
Sbjct: 101 SFFMLLSTLMFARVFHSICSFRTERLQIQLTDQRFHIFSRLTCAYFVLSILDASLIYLCF 160
Query: 182 LLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTL 241
D S +L E F + L L I+L+ + + D +
Sbjct: 161 TSEHLGDKSTRMLFVCE-----FSVLLLNLTIEASKLCIYLYEA----------RHLDQV 205
Query: 242 -AAGSLLEWKGILIRNFGFFLDMATLLMALGHYIH--IWWLRGMAFHLVDAILFLNIRAL 298
S ++ + R+ L + L M Y+ I+ +R M
Sbjct: 206 WDEKSTYLFRLEVCRDGLRLLAYSLLFMYQFPYVSVPIYSIRQMY-------------TC 252
Query: 299 LSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM------------- 345
++ +RI+ + R A ++A P AT E+L D C ICRE M
Sbjct: 253 FYSLFRRIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPPENTDEM 312
Query: 346 --------AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPG 397
K+L C H+ H CLR+WL++ +CP CR+ + +G + +S G
Sbjct: 313 EPLPRGLDMTPKRLPCGHILHFHCLRNWLER----QQTCPICRRSV-IGNQ----SSPTG 363
Query: 398 EVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQ 457
+S A Q++ + NT T T V P T +G P +S + P+
Sbjct: 364 IPASPNVRATQIATQVPNPQNTPTT--TAV-PGITNSSNQGDP------QASTFNGVPNA 414
Query: 458 GVDGAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAIEDTSWSLWPMNPSQASASGSP 516
G T S + R ++ +R ++ I S S NPS +G P
Sbjct: 415 NSSGFAAHTQDLSSVIPR-RIALRDGWTMLPIPGTRRIPTYSQSTSTTNPSATPTTGDP 472
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 309 FIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 368
F+K R A+ H +ALP+AT +L+A+DD CAIC + M AK C H FH CLR W
Sbjct: 593 FMKRRSAV-HKISALPEATPAQLQAFDDVCAICYQEMYSAKITRCRHFFHGVCLRKW--- 648
Query: 369 GLNEMYSCPTCRKPLFVGRREIE 391
L CP C + + + E
Sbjct: 649 -LYVQDRCPLCHEIMMYTDKADE 670
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 365
K F+ R A+ +++ LP+ L+ DD CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSHLQEIDDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 366 LDQGLNEMYSCPTCRKPLFVGRREIEANSR---------PGEVSSDEQLARQLSMGLDRQ 416
L +CP C + +++ EI+ NS P E + E+ R+ + G DR+
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDEIKDNSNASNNNGFIAPNENPNPEEALREDAAGSDRE 630
Query: 417 NN 418
N
Sbjct: 631 LN 632
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 108/539 (20%), Positives = 207/539 (38%), Gaps = 86/539 (15%)
Query: 65 ANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLW 124
NF++ + L + + FG+L E ERL +V+ ++ + AG
Sbjct: 52 GNFLIVHYCLFVWAIIRVLFGQLTAIEYDHIFERL--HVVLVTLASIVITMRKTYMAGHM 109
Query: 125 SVWLTVLCSLKMFQALARDRLE---RLNASPSATPWTYFRVFSALLFVLA-VDIFWIRMC 180
++ LC + + + RDR++ +++ + S+ F L VL VD ++ C
Sbjct: 110 TILFYTLCLVAHW--VLRDRMDFVFQVHGTDSSLLGILCSRFMFSLLVLGMVDYKMLKFC 167
Query: 181 L----LLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIW---------LHHSAG 227
+ + K D + L L F L + + +L+ L ++ L + G
Sbjct: 168 VQNTNVDGKRHDLYLMLALSFAQL--ILDVLHVVLLTSLNLFEMVRSRRTRSANLVYEGG 225
Query: 228 NSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLV 287
+ + A + F +LE K I F + + +++ + + + W + +V
Sbjct: 226 TTDDDADDEVF-------ILEGKYIYETVFDLTITVLKVILDIIQEVFVPW----SITVV 274
Query: 288 DAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM-- 345
+I +I+A S ++ + + K L+ L D + E+L D C IC + M
Sbjct: 275 YSIFVRSIKAGESFLL--VYNYWKNN---KKLYEKLSDVSEEQLDDTDSMCIICMDDMLP 329
Query: 346 --------AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPG 397
+AK L C H+ H CL+SW+++ +CP CR +F A ++
Sbjct: 330 TTETTKMNRRAKMLPCGHMLHFGCLKSWMERS----QTCPICRLSVFANDSNSHATTQAR 385
Query: 398 EVSSDEQLARQLSMGLDRQNNT---------------GQTLPTGVFPNQTQPPVEGSPWR 442
E + + L + G+D + G + G N +G
Sbjct: 386 EQTPPDLLQER---GIDEHIDVIGMQDMSVQSISLHEGTAVRRGTTGNCMNQAYDGGLLS 442
Query: 443 NAGLDSSWLHAWPSQGVDGAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAIEDTSWSL 502
+ D + A+P ++ + L+ Q + +AS Q +
Sbjct: 443 HEERDQAGWVAFP---IEFRADNKVF--FNLNDSQGDRQWMASYTSYPRQNMVNSD---- 493
Query: 503 WPMNPSQASASGSPVP-PAVPGRHPGNTGGAHARSTSRSANENIANILAMA--ETVREV 558
+P AS S S +P P++PG G + +++ A N ++A + E +EV
Sbjct: 494 ---DPDNASESHSRIPSPSLPGSLEGTSSQVDVTVSAKDAPANACFVIATSKLEQTKEV 549
>sp|A8WWR3|HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
briggsae GN=hrdl-1 PE=3 SV=1
Length = 578
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 59/342 (17%)
Query: 59 ATVALLANFVL-----------NVFVLINLCLKTIF---FGELYPAETRKFVERLINYVI 104
+TV +A+++L + F ++ +C K I F EL E + ++Y++
Sbjct: 86 STVFQMAHYILTDTTLIWVAINSYFAILAMCTKLIIKLTFKELSRQEEVAARQAFLSYIL 145
Query: 105 YKGTFLPLVIPPTVFQAGL-WSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVF 163
+L +V P + W +W V L Q + RL+ SPS + RV
Sbjct: 146 LTIVYLSVVTGPQKGHRVMPWMIWGGVCGFLSHLQFVTCQRLKY--TSPSCDRGSQ-RVS 202
Query: 164 SALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLH 223
LF+ V I M + L+ +LL+F+ L F + +
Sbjct: 203 FISLFLFFVSIAMTFMVSRFQQHLEWQPAVLLYFDCLLAVFRSTYIL------------- 249
Query: 224 HSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMAT-----LLMALGHYIHIWW 278
F +++ + + +R+F ++L++AT LL L + +
Sbjct: 250 --------------FRCISSSRVFSFNPDSVRHFNYWLELATNFACELLQFLSYAQLFVF 295
Query: 279 LRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDEC 338
G+ +L +++ + + +++ + H+ +A P + DD C
Sbjct: 296 APGL--NLTSIFFLYHMKLTYNCMREQLGRHRTHKKIFEHIESAYPSVKAAN---SDDRC 350
Query: 339 AICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380
+C E + +++L C+H FH CL WL Q SCPTCR
Sbjct: 351 IVCWELLGTSRRLPCSHQFHDWCLMWWLAQD----SSCPTCR 388
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 530 GGAHARSTSRSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 586
G + R+A + +M ETV E+ P M + I DL+++ SA T+ N+L+
Sbjct: 430 GSSFGNIFGRAAEPTQEQLQSMLETVLEMFPQMSPETILADLRQSGSAQSTIENILE 486
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 318 HLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCP 377
H ++P A++ +L+ ++D C+IC + M A C+H FH ACL+ WL + E +CP
Sbjct: 517 HKIQSMPTASTLQLQQHNDICSICFQDMKSAVITPCSHFFHAACLKKWLY--VQE--TCP 572
Query: 378 TCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPPVE 437
C L + +++ S PG + A Q P V Q QP VE
Sbjct: 573 LCHGQL---KSQLQPTSSPGTPTQGTPAANQ--------------NPREVEQEQRQPQVE 615
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 366
K F+ R A+ + +LP AT E+L ++D CAIC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKI-KSLPIATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWL 565
Query: 367 DQGLNEMYSCPTCR 380
+ E +CP C
Sbjct: 566 --YVQE--TCPLCH 575
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 366
K F+ R A+ + + LP AT E+L ++D CAIC + M A C+H FH CL+ W
Sbjct: 507 KSFLLRRDAVNKIKS-LPVATQEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKW- 564
Query: 367 DQGLNEMYSCPTCR 380
L +CP C
Sbjct: 565 ---LYVQDTCPLCH 575
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 366
K F+ R A+ + + LP AT E+L ++D C+IC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKIKS-LPVATKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWL 565
Query: 367 DQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMG-LDRQNNTGQTLPT 425
+ E +CP C L ++ S EQ A +G + R T T P
Sbjct: 566 --YVQE--TCPLCHCQLKSLSQQATGESGSSTNPVSEQSATNPPLGPVSRAEVT--TEPL 619
Query: 426 GVFPNQTQPPVEGSPWRNAGLDSS 449
P T+ +E P + + S
Sbjct: 620 AAVP--TRSALEQEPTMDIKVSGS 641
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 365
K F+ R A+ +++ LP+ L+ +D CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSRLQEINDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 366 LDQGLNEMYSCPTCRKPLFVGRREIEANS 394
L +CP C + +++ +I+ NS
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDDIKDNS 599
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 365
K F+ R A+ +++ LP+ L+ +D CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSRLQEINDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 366 LDQGLNEMYSCPTCRKPLFVGRREIEANS 394
L +CP C + +++ +I+ NS
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDDIKDNS 599
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 366
K F+ R A+ + + LP +T E+L ++D C+IC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKIKS-LPVSTKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWL 565
Query: 367 DQGLNEMYSCPTCRKPL 383
+ E +CP C L
Sbjct: 566 --YVQE--TCPLCHCQL 578
>sp|P90859|HRDL1_CAEEL E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
elegans GN=hrdl-1 PE=1 SV=2
Length = 564
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/341 (20%), Positives = 132/341 (38%), Gaps = 47/341 (13%)
Query: 72 FVLINLCLKTIF---FGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGL-WSVW 127
F ++ +C + I F EL E + YV+ +L +VI P + W +W
Sbjct: 95 FAILAVCTRLIIKLTFKELARQEENVARQAFFCYVLLTIVYLSVVIGPQKGHRVMPWMIW 154
Query: 128 LTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTL 187
+ L Q + RL+ + SPS + F +L F+ V I + L
Sbjct: 155 GGICAFLSHLQFITCQRLKHI--SPSCDRGSQKISFLSL-FLFFVSIAMTFLISRFQHHL 211
Query: 188 DSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLL 247
+LL+F+ L F + + F +++ +
Sbjct: 212 TWQPAVLLYFDCLLAVFRSTYIL---------------------------FRCISSSRVF 244
Query: 248 EWKGILIRNFGFFLDMAT-LLMALGHYIHIWWLRGMA--FHLVDAILFLNIRALLSAIIK 304
+ +R+F ++L++ T + L + L + +L +++ + + +
Sbjct: 245 SFNPDSVRHFNYWLELITNFVCELIQMLSFAQLLAFSPGLNLTSIFFLYHMKLTYNCMTE 304
Query: 305 RIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRS 364
++ + H+ + P S + DD C +C E + +++L C+H FH CL
Sbjct: 305 QLSRHRNHKKIFEHIERSYP---SVKCANGDDRCVVCWELLGTSRRLPCSHQFHDWCLMW 361
Query: 365 WLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQL 405
WL Q SCPTCR + + +I +P EV + +L
Sbjct: 362 WLAQD----SSCPTCRCTIPSPQDQIR---QPPEVGNSTRL 395
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 539 RSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 586
R+A + M E VRE+ P M D+I DL+++ SA T+ N+L+
Sbjct: 424 RAAEPTEEQLQTMLEQVREMFPQMSVDIIMTDLRQSGSAQSTIENILE 471
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 337 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383
EC +C+E A ++L CNHLFH +C+ WL+Q SCP CRK L
Sbjct: 230 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 275
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 327 TSEELRAY--DDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381
T E L+ + + EC IC+E + K ++L C H FH CL+ WLD E SCP CR
Sbjct: 217 TEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLD----EHNSCPICRH 272
Query: 382 PLFVGRREIE 391
L ++ E
Sbjct: 273 ELPTDDQKYE 282
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 337 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383
EC +C++ A + ++L CNHLFH C+ WL+Q SCP CRK L
Sbjct: 228 ECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQ----HDSCPVCRKSL 273
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 20/83 (24%)
Query: 318 HLHAALPDATSEELR--AYDDE-CAICREPM-------------AKAKKLLCNHLFHLAC 361
L L T E+L+ A DD C IC + + K K+L C H+ HL+C
Sbjct: 326 QLDDTLVTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSC 385
Query: 362 LRSWLDQGLNEMYSCPTCRKPLF 384
L++W+++ +CP CR P+F
Sbjct: 386 LKNWMERS----QTCPICRLPVF 404
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 312 LRIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSW-LD 367
L+ A G L + EE+ D C IC E P + L C H FH C+ W L
Sbjct: 230 LQNAFGQLQLRVVKEGDEEINPNGDSCVICFEHYKPNDIVRILTCKHFFHKNCIDPWILS 289
Query: 368 QGLNEMYSCPTCRKPLF--VG-RREIEANSRPGEVSSDEQLARQLSMGLDRQNN 418
G +CP C+ + +G + ++E + P +V +L LS + NN
Sbjct: 290 HG-----TCPICKCDILKVLGIQVDVENGTEPLQVLMSSELCETLSPSEEETNN 338
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 313 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 369
+ A+G L +E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 252 KKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPW---- 307
Query: 370 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 427
L E +CP C+ + IE + G VS ++ ++S ++N +T +G
Sbjct: 308 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNEISNSASSHEEDNRSETASSGY 366
Query: 428 FPNQ--TQPPVE 437
Q +PP+E
Sbjct: 367 ASVQGTDEPPLE 378
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 328 SEELRAYDDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383
+EE + EC +C+E ++L CNHLFH C+ WL+Q +CP CRK L
Sbjct: 218 TEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQ----HDTCPVCRKSL 272
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 337 ECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV----GRR 388
EC++C + + L C+H FHL C+ +WL N CP CR P+ + +
Sbjct: 134 ECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKN----CPLCRAPVLLITEPPHQ 189
Query: 389 EIEANSRPGEVSSDEQLARQLSMGLDRQNN 418
E E N +P SS++ RQ S R +N
Sbjct: 190 ETETNHQPDSESSNDLRGRQDSSRSRRNHN 219
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 275 HIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAY 334
+ W G+ + + A ++I+ ++I H+ + L
Sbjct: 177 YAWGANGLDTIITQLLNQFENTGPPPADTEKIQALPTIQITEEHVGSGL----------- 225
Query: 335 DDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383
EC +C+E ++L CNHLFH C+ WL+Q +CP CRK L
Sbjct: 226 --ECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQ----HDTCPVCRKSL 271
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 313 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 369
+ A+G L +E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 255 KKAIGRLQLRTQKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHVFHKTCVDPW---- 310
Query: 370 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 427
L E +CP C+ + IE + G VS ++ + S ++N +T +G
Sbjct: 311 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNETSSNASPHEEDNRSETASSGY 369
Query: 428 FPNQ--TQPPVE 437
Q +PP+E
Sbjct: 370 ASVQGADEPPLE 381
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 313 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 369
+ A+G L E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 252 KKAIGRLQLRTLKQGDREIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPW---- 307
Query: 370 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 427
L E +CP C+ + IE + G VS ++ ++S ++N +T +G
Sbjct: 308 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNEISNSASSHEEDNRSETASSGY 366
Query: 428 FPNQ--TQPPVE 437
Q +PP+E
Sbjct: 367 ASVQGADEPPLE 378
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 27/199 (13%)
Query: 196 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 255
F + + VA E HG + + I+ GN + F+ + + KG+ I
Sbjct: 112 FTQKIKVASE-------HGARGVIIYNFPGTGNQVFPMSHQAFEDIVVVMIGNIKGMEIL 164
Query: 256 NFGFFLDMATLLMALGHYIHIWWLRG--MAFHLVDA-----ILFLNIRALLSAII--KRI 306
+ T+++ +G H+ WL ++F +V F +IR L A I +R
Sbjct: 165 HLIRKGVHVTVMVEVGRK-HVIWLNHYFVSFMIVTTATLAYFTFYHIRRLWVARIENRRW 223
Query: 307 KGFIK-LRIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACL 362
K + L+ A G L + EE+ D C IC E P + L C H FH C+
Sbjct: 224 KRLTRELKKAFGQLQVRVLKEGDEEVNPNADSCVICFEAYKPNEIVRILTCKHFFHKNCI 283
Query: 363 RSW-LDQGLNEMYSCPTCR 380
W L G +CP C+
Sbjct: 284 DPWILAHG-----TCPMCK 297
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 337 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383
EC +C++ ++L CNHLFH C+ WL+Q SCP CRK L
Sbjct: 231 ECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQ----HDSCPVCRKSL 276
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 304 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA---KKLLCNHLFHLA 360
++I+ ++I H+ + L EC +C+E ++L CNHLFH
Sbjct: 207 EKIQALPTIQITEEHVGSGL-------------ECPVCKEDYTVGECVRQLPCNHLFHND 253
Query: 361 CLRSWLDQGLNEMYSCPTCRKPL 383
C+ WL+Q +CP CRK L
Sbjct: 254 CIIPWLEQ----HDTCPVCRKSL 272
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 265 TLLMALGHYIHIWWLRG--MAFHLVDA-----ILFLNIRALLSAII--KRIKGFIK-LRI 314
T+++ +G H+ WL ++F +V F +IR L A I +R K + L+
Sbjct: 174 TVMVEVGRK-HVIWLNHYFVSFMIVTTATLAYFTFYHIRRLWVARIEDRRWKRLTRELKK 232
Query: 315 ALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSW-LDQGL 370
A G L + EE+ D C IC E P + L C H FH C+ W L G
Sbjct: 233 AFGQLQVRILKEGDEEVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHG- 291
Query: 371 NEMYSCPTCRKPLFVG---RREIEANSRPGEVSSDEQLARQLSMGLDRQNN 418
+CP C+ + + +IE S +V +L S + NN
Sbjct: 292 ----TCPMCKCDILKALGIQMDIEDGSDSLQVLMSNELPGTFSAMEEELNN 338
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 329 EELRAYDDECAIC---REPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384
E D +C++C +P K +++ +C H FH+ C+ W L +CP CR L
Sbjct: 91 ESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLW----LTSHTTCPLCRLALI 146
Query: 385 VGR-REIEANSRPGEVSSDEQLARQ 408
R R+ + + P VS DE+++ Q
Sbjct: 147 PSRSRQSQDDPVPSLVSPDEEVSSQ 171
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 304 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA---KKLLCNHLFHLA 360
KR+K + + A+G L + L D CA+C EP + + L CNH FH
Sbjct: 228 KRLKA--EAKKAIGKLQLRTIKQGDKVLGPDGDSCAVCIEPYKPSDVVRILTCNHFFHKN 285
Query: 361 CLRSWLDQGLNEMYSCPTCR----KPLFVGRREIEANS 394
C+ W L E +CP C+ K L + E E S
Sbjct: 286 CIDPW----LLEHRTCPMCKCDILKSLGIAEDEEEGTS 319
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 337 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383
EC +C+E K ++L CNH FH +C+ WL+ L++ +CP CRK L
Sbjct: 228 ECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLE--LHD--TCPVCRKSL 273
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 322 ALP--DATSEELRAYDDECAICR---EPMAKAKKLLCNHLFHLACLRSWLDQGLNEMY-S 375
ALP + T L + ++CA+C E +AK++ C HL+H CL WL E++ S
Sbjct: 206 ALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWL-----ELHNS 260
Query: 376 CPTCRKPLFVGRREIEANSRPGEVSS---DEQLARQLSMGLDR 415
CP CR L + E R + +S D + Q S G +R
Sbjct: 261 CPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNR 303
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 335 DDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR---- 387
D EC++C+EP + +K L C H FH C+ W L + SCP CR L
Sbjct: 67 DLECSVCKEPAEEGQKYRILPCKHEFHEECILLW----LKKTNSCPLCRYELETDDPVYE 122
Query: 388 -----REIEANSRPGE 398
R+ EAN R E
Sbjct: 123 ELRRFRQDEANRRERE 138
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 328 SEELRAYDDECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383
S E++ ECAIC A +++ CNH FH++C+ +W L SCP CR L
Sbjct: 95 SGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTW----LVSHSSCPNCRHSL 150
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 282 MAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAIC 341
+A+ +D + L R S +R + ++ A+ L + EEL +D C +C
Sbjct: 202 IAYFYLDCVWRLTPRVPNSFTRRRSQIKTDVKKAIDQLQLRVLKEGDEELDLNEDNCVVC 261
Query: 342 ---REPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380
+P + L C H FH AC+ WL +CP C+
Sbjct: 262 FDTYKPQDVVRILTCKHFFHKACIDPWLL----AHRTCPMCK 299
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 290 ILFLNIRALLSAI--IKRIKGFIKLRIALGHLHAALPDATSE--------------ELRA 333
+L L I AL+ A+ I+ F++ + H P+A + EL
Sbjct: 43 LLILVISALICALSLYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELAG 102
Query: 334 YDDECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389
+ ECAIC + + + C H FH+ C+ W L+ SCPTCR +F E
Sbjct: 103 AEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKW----LSTRSSCPTCRTSIFSQHSE 158
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 312 LRIALGHLHAALPDATSEELRAYDDECAIC---REPMAKAKKLLCNHLFHLACLRSWLDQ 368
+R A+G L + +EL +D C +C +P + L C H+FH AC+ WL
Sbjct: 230 VRKAIGKLQLRVLQEGDKELEPDEDNCVVCFDIYKPQDVVRILTCKHIFHKACIDPWLL- 288
Query: 369 GLNEMYSCPTCR 380
+CP C+
Sbjct: 289 ---AHRTCPMCK 297
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 322 ALPDATSEELRAYDDECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCP 377
A ++ + D ECAIC + + + +CNHLFH+ C+ +W L +CP
Sbjct: 108 AYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTW----LYSHATCP 163
Query: 378 TCRK----------------PLFVGRREIEANSRPGEV--SSDEQLARQLSMGLDRQNNT 419
CR PL R + + EV S +L+ ++S R N+T
Sbjct: 164 VCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIETVEVAKSHHRRLSSEISGKFPRSNST 223
Query: 420 GQTL 423
G ++
Sbjct: 224 GHSM 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,762,573
Number of Sequences: 539616
Number of extensions: 8683844
Number of successful extensions: 31518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 432
Number of HSP's that attempted gapping in prelim test: 31210
Number of HSP's gapped (non-prelim): 577
length of query: 587
length of database: 191,569,459
effective HSP length: 123
effective length of query: 464
effective length of database: 125,196,691
effective search space: 58091264624
effective search space used: 58091264624
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)