Query 007840
Match_columns 587
No_of_seqs 524 out of 2250
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 16:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 100.0 9.5E-41 2.1E-45 336.4 30.1 325 12-385 6-346 (491)
2 KOG0802 E3 ubiquitin ligase [P 100.0 7.6E-38 1.6E-42 348.9 28.9 516 11-581 4-534 (543)
3 KOG0804 Cytoplasmic Zn-finger 99.7 8.3E-19 1.8E-23 182.6 -1.9 135 336-484 176-326 (493)
4 KOG4628 Predicted E3 ubiquitin 99.3 2.4E-12 5.3E-17 133.6 8.7 74 310-386 202-280 (348)
5 PF13639 zf-RING_2: Ring finge 99.2 1E-11 2.2E-16 91.9 1.8 41 336-380 1-44 (44)
6 PHA02929 N1R/p28-like protein; 99.0 4.5E-10 9.8E-15 112.1 5.4 47 334-384 173-227 (238)
7 PLN03208 E3 ubiquitin-protein 99.0 6.4E-10 1.4E-14 106.7 5.8 55 334-388 17-83 (193)
8 KOG0317 Predicted E3 ubiquitin 98.9 4.3E-10 9.2E-15 112.7 3.2 50 333-386 237-286 (293)
9 PF12678 zf-rbx1: RING-H2 zinc 98.9 4.7E-10 1E-14 92.3 2.5 43 334-380 18-73 (73)
10 PF15227 zf-C3HC4_4: zinc fing 98.9 6.1E-10 1.3E-14 81.6 2.4 42 338-379 1-42 (42)
11 KOG0823 Predicted E3 ubiquitin 98.9 7.3E-10 1.6E-14 108.1 2.8 52 335-387 47-98 (230)
12 PF13920 zf-C3HC4_3: Zinc fing 98.7 5.5E-09 1.2E-13 79.5 2.7 46 335-384 2-48 (50)
13 COG5540 RING-finger-containing 98.7 5.1E-09 1.1E-13 105.1 2.5 48 335-385 323-373 (374)
14 PF13923 zf-C3HC4_2: Zinc fing 98.7 7.9E-09 1.7E-13 74.5 2.3 38 338-379 1-39 (39)
15 cd00162 RING RING-finger (Real 98.7 1.5E-08 3.3E-13 73.9 3.5 44 337-383 1-45 (45)
16 PF12861 zf-Apc11: Anaphase-pr 98.7 1.3E-08 2.8E-13 85.0 3.2 51 334-385 20-83 (85)
17 smart00504 Ubox Modified RING 98.6 4.7E-08 1E-12 77.6 4.0 45 337-385 3-47 (63)
18 KOG0320 Predicted E3 ubiquitin 98.5 3.9E-08 8.5E-13 92.2 2.7 47 336-386 132-180 (187)
19 PF00097 zf-C3HC4: Zinc finger 98.5 4.9E-08 1.1E-12 70.9 2.6 40 338-379 1-41 (41)
20 PHA02926 zinc finger-like prot 98.5 7.3E-08 1.6E-12 93.6 4.2 52 334-385 169-231 (242)
21 smart00184 RING Ring finger. E 98.5 1.3E-07 2.7E-12 66.6 3.3 39 338-379 1-39 (39)
22 KOG1734 Predicted RING-contain 98.5 8.3E-06 1.8E-10 81.1 16.9 51 334-386 223-283 (328)
23 PF13445 zf-RING_UBOX: RING-ty 98.4 1.1E-07 2.4E-12 69.8 2.1 39 338-377 1-43 (43)
24 KOG0828 Predicted E3 ubiquitin 98.4 2.3E-06 4.9E-11 91.2 11.6 49 334-385 570-635 (636)
25 KOG2164 Predicted E3 ubiquitin 98.4 2.5E-07 5.4E-12 99.6 4.4 56 335-390 186-242 (513)
26 TIGR00599 rad18 DNA repair pro 98.4 2.5E-07 5.4E-12 99.0 4.0 48 334-385 25-72 (397)
27 COG5574 PEX10 RING-finger-cont 98.3 2.3E-07 5E-12 92.2 2.6 49 335-386 215-264 (271)
28 PF14634 zf-RING_5: zinc-RING 98.2 7E-07 1.5E-11 66.1 2.4 41 337-381 1-44 (44)
29 COG5194 APC11 Component of SCF 98.2 7E-07 1.5E-11 72.7 2.3 31 352-386 53-83 (88)
30 KOG1493 Anaphase-promoting com 98.1 8.1E-07 1.8E-11 71.8 1.0 50 334-384 19-81 (84)
31 KOG0287 Postreplication repair 98.1 9.8E-07 2.1E-11 90.0 1.2 47 337-387 25-71 (442)
32 PF04564 U-box: U-box domain; 98.1 2.1E-06 4.6E-11 70.6 2.4 47 337-386 6-52 (73)
33 PF02845 CUE: CUE domain; Int 98.0 6.9E-06 1.5E-10 60.1 3.4 39 549-587 2-41 (42)
34 smart00546 CUE Domain that may 98.0 1.1E-05 2.3E-10 59.4 4.3 40 548-587 2-42 (43)
35 KOG1785 Tyrosine kinase negati 97.9 2.3E-05 5E-10 81.7 8.1 48 336-385 370-417 (563)
36 COG5432 RAD18 RING-finger-cont 97.9 3.9E-06 8.6E-11 84.0 1.7 47 336-386 26-72 (391)
37 KOG2930 SCF ubiquitin ligase, 97.8 5.9E-06 1.3E-10 70.7 1.5 46 336-385 47-109 (114)
38 KOG2177 Predicted E3 ubiquitin 97.8 8E-06 1.7E-10 83.3 2.4 43 334-380 12-54 (386)
39 TIGR00570 cdk7 CDK-activating 97.8 2E-05 4.3E-10 81.3 4.1 50 335-387 3-57 (309)
40 KOG0824 Predicted E3 ubiquitin 97.7 2E-05 4.3E-10 79.9 2.2 48 335-385 7-54 (324)
41 COG5219 Uncharacterized conser 97.5 3.4E-05 7.3E-10 87.7 1.7 49 334-384 1468-1523(1525)
42 KOG4172 Predicted E3 ubiquitin 97.5 3.5E-05 7.6E-10 58.4 1.2 47 335-384 7-54 (62)
43 PF11793 FANCL_C: FANCL C-term 97.5 2.3E-05 4.9E-10 64.0 -0.1 50 336-385 3-67 (70)
44 KOG0978 E3 ubiquitin ligase in 97.5 9.4E-05 2E-09 83.7 4.3 48 336-386 644-691 (698)
45 PF13705 TRC8_N: TRC8 N-termin 97.5 0.01 2.3E-07 65.2 19.7 99 127-228 349-448 (508)
46 KOG4265 Predicted E3 ubiquitin 97.5 6.3E-05 1.4E-09 78.3 2.5 49 333-385 288-337 (349)
47 smart00744 RINGv The RING-vari 97.4 0.00011 2.4E-09 55.6 3.1 42 337-380 1-49 (49)
48 PF14835 zf-RING_6: zf-RING of 97.4 3.9E-05 8.4E-10 60.6 -0.1 44 337-386 9-53 (65)
49 KOG0311 Predicted E3 ubiquitin 97.3 4.4E-05 9.6E-10 78.9 -0.0 49 335-386 43-92 (381)
50 KOG0827 Predicted E3 ubiquitin 97.3 8.9E-05 1.9E-09 77.3 2.1 46 336-382 5-54 (465)
51 KOG4159 Predicted E3 ubiquitin 97.1 0.0003 6.6E-09 75.6 2.7 49 333-385 82-130 (398)
52 KOG1039 Predicted E3 ubiquitin 96.8 0.00058 1.3E-08 72.1 2.2 52 334-385 160-222 (344)
53 KOG1571 Predicted E3 ubiquitin 96.7 0.0017 3.6E-08 67.9 4.5 44 334-384 304-347 (355)
54 KOG1002 Nucleotide excision re 96.7 0.0012 2.5E-08 71.5 3.2 61 322-387 528-589 (791)
55 KOG3970 Predicted E3 ubiquitin 96.6 0.0016 3.4E-08 63.6 3.6 54 333-386 48-107 (299)
56 KOG1645 RING-finger-containing 96.6 0.0011 2.4E-08 70.0 2.5 47 334-382 3-54 (463)
57 KOG1941 Acetylcholine receptor 96.6 0.0012 2.6E-08 69.1 2.6 45 335-381 365-413 (518)
58 KOG2879 Predicted E3 ubiquitin 96.6 0.0064 1.4E-07 61.3 7.5 50 333-384 237-287 (298)
59 KOG2114 Vacuolar assembly/sort 96.5 0.0026 5.6E-08 72.6 4.5 68 309-383 814-882 (933)
60 KOG0825 PHD Zn-finger protein 96.4 0.00088 1.9E-08 75.3 0.6 32 350-385 141-172 (1134)
61 COG5152 Uncharacterized conser 96.4 0.0012 2.5E-08 63.3 1.3 43 336-382 197-239 (259)
62 KOG4445 Uncharacterized conser 96.4 0.0014 3E-08 66.5 1.8 53 335-387 115-189 (368)
63 KOG4692 Predicted E3 ubiquitin 96.3 0.0034 7.3E-08 65.0 3.8 48 334-385 421-468 (489)
64 KOG0297 TNF receptor-associate 96.3 0.0019 4.1E-08 70.0 1.8 50 333-386 19-69 (391)
65 PF11789 zf-Nse: Zinc-finger o 96.3 0.0018 3.8E-08 50.7 1.1 42 335-378 11-53 (57)
66 KOG2660 Locus-specific chromos 96.1 0.0024 5.1E-08 66.0 1.3 48 335-386 15-63 (331)
67 PF10367 Vps39_2: Vacuolar sor 95.9 0.014 3.1E-07 50.9 5.4 30 334-363 77-108 (109)
68 KOG1813 Predicted E3 ubiquitin 95.8 0.003 6.6E-08 64.2 0.7 45 335-383 241-285 (313)
69 COG5222 Uncharacterized conser 95.6 0.012 2.6E-07 59.8 4.1 46 336-384 275-322 (427)
70 KOG4275 Predicted E3 ubiquitin 95.5 0.0038 8.3E-08 63.2 0.0 42 335-384 300-342 (350)
71 KOG1428 Inhibitor of type V ad 95.3 0.0088 1.9E-07 71.0 2.4 53 333-385 3484-3545(3738)
72 PF11547 E3_UbLigase_EDD: E3 u 95.1 0.036 7.9E-07 41.1 4.0 38 549-586 10-48 (53)
73 PHA02825 LAP/PHD finger-like p 94.7 0.029 6.2E-07 52.5 3.4 50 333-385 6-60 (162)
74 KOG1814 Predicted E3 ubiquitin 94.7 0.066 1.4E-06 57.0 6.4 50 333-382 182-238 (445)
75 PF14447 Prok-RING_4: Prokaryo 94.3 0.017 3.7E-07 44.4 0.9 46 336-387 8-53 (55)
76 PHA02862 5L protein; Provision 94.3 0.032 6.9E-07 51.3 2.8 48 335-385 2-54 (156)
77 PF14570 zf-RING_4: RING/Ubox 94.2 0.034 7.5E-07 41.8 2.2 43 338-383 1-47 (48)
78 KOG1952 Transcription factor N 93.9 0.033 7.2E-07 63.9 2.4 52 331-382 187-245 (950)
79 KOG4185 Predicted E3 ubiquitin 93.4 0.046 9.9E-07 57.0 2.3 45 336-383 4-54 (296)
80 KOG0826 Predicted E3 ubiquitin 93.3 0.16 3.6E-06 52.6 6.1 47 333-383 298-345 (357)
81 KOG3039 Uncharacterized conser 93.3 0.081 1.8E-06 52.7 3.7 49 335-387 221-273 (303)
82 PF10272 Tmpp129: Putative tra 93.2 0.13 2.9E-06 54.7 5.4 33 353-385 311-352 (358)
83 COG5236 Uncharacterized conser 93.0 0.069 1.5E-06 55.4 2.8 54 326-383 52-107 (493)
84 COG5175 MOT2 Transcriptional r 92.9 0.069 1.5E-06 55.3 2.7 50 334-386 13-66 (480)
85 PF12906 RINGv: RING-variant d 92.9 0.043 9.3E-07 41.2 0.8 40 338-379 1-47 (47)
86 KOG2034 Vacuolar sorting prote 92.8 0.14 3E-06 59.5 5.1 35 333-367 815-851 (911)
87 KOG1001 Helicase-like transcri 92.0 0.058 1.3E-06 62.3 0.9 49 336-387 455-503 (674)
88 KOG3268 Predicted E3 ubiquitin 91.7 0.16 3.4E-06 48.3 3.2 50 336-385 166-229 (234)
89 PF07800 DUF1644: Protein of u 91.6 0.2 4.4E-06 46.9 3.8 34 335-368 2-48 (162)
90 PHA03096 p28-like protein; Pro 91.1 0.12 2.6E-06 53.5 2.1 46 336-382 179-232 (284)
91 PF05883 Baculo_RING: Baculovi 91.0 0.076 1.6E-06 48.5 0.4 30 337-366 28-66 (134)
92 PF05290 Baculo_IE-1: Baculovi 90.3 1.1 2.4E-05 40.8 7.1 50 336-386 81-134 (140)
93 KOG0802 E3 ubiquitin ligase [P 90.2 0.19 4.2E-06 57.0 2.8 60 321-388 465-524 (543)
94 KOG0827 Predicted E3 ubiquitin 89.9 0.049 1.1E-06 57.5 -2.0 47 336-386 197-247 (465)
95 KOG1940 Zn-finger protein [Gen 89.8 0.19 4.1E-06 51.6 2.1 42 336-381 159-204 (276)
96 KOG2817 Predicted E3 ubiquitin 88.5 1.1 2.3E-05 48.0 6.5 46 336-382 335-383 (394)
97 KOG4739 Uncharacterized protei 87.2 0.17 3.7E-06 50.6 -0.2 43 337-385 5-49 (233)
98 PF04641 Rtf2: Rtf2 RING-finge 87.0 0.49 1.1E-05 48.5 3.1 47 335-386 113-163 (260)
99 KOG2932 E3 ubiquitin ligase in 86.4 0.24 5.2E-06 50.9 0.4 42 337-384 92-134 (389)
100 KOG3800 Predicted E3 ubiquitin 86.2 0.55 1.2E-05 48.1 2.8 47 337-386 2-53 (300)
101 KOG3161 Predicted E3 ubiquitin 85.7 0.34 7.4E-06 54.3 1.1 39 337-382 13-55 (861)
102 COG5183 SSM4 Protein involved 84.8 0.58 1.3E-05 53.8 2.4 50 334-385 11-67 (1175)
103 PF08746 zf-RING-like: RING-li 84.6 0.68 1.5E-05 34.0 1.9 40 338-379 1-43 (43)
104 KOG0298 DEAD box-containing he 83.9 0.36 7.9E-06 58.1 0.4 44 336-383 1154-1198(1394)
105 KOG4367 Predicted Zn-finger pr 83.7 0.5 1.1E-05 50.6 1.2 34 335-368 4-37 (699)
106 KOG0801 Predicted E3 ubiquitin 81.0 0.45 9.8E-06 44.6 -0.2 31 329-359 171-204 (205)
107 KOG1100 Predicted E3 ubiquitin 80.5 0.62 1.3E-05 46.2 0.5 40 337-384 160-200 (207)
108 KOG4362 Transcriptional regula 80.2 0.52 1.1E-05 53.9 -0.1 49 336-385 22-70 (684)
109 KOG3899 Uncharacterized conser 79.1 1.1 2.4E-05 45.8 1.8 35 352-386 324-367 (381)
110 PF03854 zf-P11: P-11 zinc fin 78.0 0.83 1.8E-05 34.1 0.4 43 337-385 4-47 (50)
111 KOG0309 Conserved WD40 repeat- 76.7 1.7 3.6E-05 49.9 2.5 25 350-378 1045-1069(1081)
112 COG5220 TFB3 Cdk activating ki 76.7 1.3 2.8E-05 44.2 1.4 47 334-383 9-63 (314)
113 KOG3053 Uncharacterized conser 75.5 1.4 3E-05 44.5 1.3 51 334-384 19-82 (293)
114 KOG3002 Zn finger protein [Gen 75.5 1.7 3.7E-05 45.4 2.1 42 336-385 49-92 (299)
115 KOG0825 PHD Zn-finger protein 74.6 2 4.3E-05 49.5 2.3 50 334-383 95-153 (1134)
116 PF02891 zf-MIZ: MIZ/SP-RING z 66.7 2.3 5E-05 32.3 0.5 45 337-382 4-50 (50)
117 KOG4718 Non-SMC (structural ma 66.1 3.4 7.3E-05 40.6 1.6 43 336-382 182-225 (235)
118 KOG2066 Vacuolar assembly/sort 64.9 3.8 8.3E-05 47.5 2.0 35 334-368 783-824 (846)
119 KOG0943 Predicted ubiquitin-pr 64.1 27 0.00059 42.6 8.5 38 549-586 190-228 (3015)
120 KOG1609 Protein involved in mR 61.8 4.2 9.2E-05 42.3 1.6 49 335-385 78-135 (323)
121 KOG1812 Predicted E3 ubiquitin 60.6 7.8 0.00017 42.1 3.4 35 335-369 146-184 (384)
122 smart00249 PHD PHD zinc finger 58.6 3.7 8E-05 29.3 0.3 28 337-364 1-31 (47)
123 KOG2068 MOT2 transcription fac 58.3 8.1 0.00017 40.6 2.8 46 336-385 250-299 (327)
124 KOG3039 Uncharacterized conser 56.2 7.2 0.00016 39.3 2.0 33 336-368 44-76 (303)
125 KOG0269 WD40 repeat-containing 54.4 8.8 0.00019 44.4 2.5 38 337-378 781-820 (839)
126 KOG1829 Uncharacterized conser 51.3 5.5 0.00012 45.2 0.4 25 350-381 534-558 (580)
127 smart00132 LIM Zinc-binding do 50.6 9.8 0.00021 26.0 1.5 36 337-384 1-38 (39)
128 COG5109 Uncharacterized conser 48.0 11 0.00023 39.4 1.7 45 336-381 337-384 (396)
129 KOG1815 Predicted E3 ubiquitin 48.0 13 0.00028 41.2 2.6 36 334-369 69-105 (444)
130 KOG3579 Predicted E3 ubiquitin 47.9 11 0.00023 38.8 1.7 34 336-369 269-306 (352)
131 PF07191 zinc-ribbons_6: zinc- 47.9 1.6 3.4E-05 35.6 -3.3 41 336-385 2-42 (70)
132 KOG3842 Adaptor protein Pellin 45.6 31 0.00068 36.0 4.6 47 333-382 288-350 (429)
133 PF04710 Pellino: Pellino; In 42.0 8.7 0.00019 41.3 0.1 31 350-383 306-338 (416)
134 PF00412 LIM: LIM domain; Int 41.6 13 0.00028 28.2 1.0 37 338-386 1-39 (58)
135 PF04216 FdhE: Protein involve 40.7 8.8 0.00019 39.9 -0.1 45 334-382 171-220 (290)
136 PF06844 DUF1244: Protein of u 38.1 20 0.00043 28.9 1.5 12 357-368 12-23 (68)
137 PF10571 UPF0547: Uncharacteri 37.0 20 0.00042 23.5 1.1 21 337-357 2-24 (26)
138 KOG3842 Adaptor protein Pellin 36.5 32 0.00069 36.0 3.1 51 335-385 341-415 (429)
139 cd04718 BAH_plant_2 BAH, or Br 35.5 11 0.00025 35.2 -0.2 29 357-385 2-30 (148)
140 KOG3113 Uncharacterized conser 34.7 29 0.00063 35.3 2.4 46 335-386 111-160 (293)
141 TIGR02921 PEP_integral PEP-CTE 34.7 1.9E+02 0.004 33.3 8.7 30 82-112 169-198 (952)
142 KOG4185 Predicted E3 ubiquitin 33.3 21 0.00046 37.0 1.3 46 335-383 207-266 (296)
143 KOG3005 GIY-YIG type nuclease 32.1 23 0.0005 36.3 1.3 48 336-383 183-242 (276)
144 PF07069 PRRSV_2b: Porcine rep 30.2 2.8E+02 0.0061 22.0 7.1 31 245-277 6-36 (73)
145 PLN02189 cellulose synthase 29.3 53 0.0011 40.0 3.8 47 335-384 34-87 (1040)
146 PF06937 EURL: EURL protein; 29.2 1.1E+02 0.0023 31.5 5.4 18 357-377 57-74 (285)
147 PF09971 DUF2206: Predicted me 28.4 7.9E+02 0.017 26.6 13.6 83 61-147 116-209 (367)
148 PF04710 Pellino: Pellino; In 28.0 20 0.00043 38.8 0.0 51 335-385 328-402 (416)
149 PF13901 DUF4206: Domain of un 27.1 33 0.00071 33.8 1.4 38 335-381 152-197 (202)
150 PF10497 zf-4CXXC_R1: Zinc-fin 25.3 71 0.0015 28.2 3.0 47 335-381 7-69 (105)
151 KOG0824 Predicted E3 ubiquitin 24.7 26 0.00056 36.5 0.1 47 334-384 104-151 (324)
152 KOG1245 Chromatin remodeling c 24.4 87 0.0019 39.8 4.6 49 335-383 1108-1159(1404)
153 PRK12495 hypothetical protein; 24.0 7.5E+02 0.016 24.9 13.5 13 373-385 58-70 (226)
154 PLN02436 cellulose synthase A 23.8 76 0.0016 38.8 3.7 47 335-384 36-89 (1094)
155 TIGR01562 FdhE formate dehydro 23.7 39 0.00085 35.6 1.3 44 335-382 184-233 (305)
156 PF14569 zf-UDP: Zinc-binding 22.5 1.3E+02 0.0029 25.1 3.8 47 335-384 9-62 (80)
157 KOG2807 RNA polymerase II tran 22.4 87 0.0019 33.1 3.4 56 322-381 313-375 (378)
158 PRK03564 formate dehydrogenase 22.3 45 0.00098 35.2 1.4 44 334-381 186-234 (309)
159 PF01363 FYVE: FYVE zinc finge 21.4 30 0.00064 27.5 -0.1 30 335-364 9-42 (69)
160 TIGR00622 ssl1 transcription f 21.0 1.2E+02 0.0025 27.2 3.5 41 336-380 56-110 (112)
161 PF14446 Prok-RING_1: Prokaryo 20.7 69 0.0015 24.9 1.7 28 335-362 5-36 (54)
162 KOG0193 Serine/threonine prote 20.1 9.7E+02 0.021 27.9 11.1 9 374-382 204-212 (678)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-41 Score=336.42 Aligned_cols=325 Identities=23% Similarity=0.353 Sum_probs=232.2
Q ss_pred HHHHHHHhhHHHHhhhhhhhccccceeccccccchhHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHcccCcHH
Q 007840 12 STILSFVGLQFWTEFSLDKLRTDGLVVENVIHLESANRVLELLLR-SYATVALLANFVLNVFVLINLCLKTIFFGELYPA 90 (587)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-s~~~~~vl~N~~~~~~~l~~~~lq~lfFG~LR~~ 90 (587)
|...+++++....+-++.. ....|++++.-+| |.+.++++.|++++++.++++++++++||+||..
T Consensus 6 y~l~~~Vl~~l~~~~~~~~-------------s~t~ys~l~~t~~ls~~hi~i~~~~ill~~~l~~~~l~~llFGsLr~~ 72 (491)
T COG5243 6 YVLASLVLFGLSVLLSLYS-------------SATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFGSLRTF 72 (491)
T ss_pred hhHHHHHHHHHHHHHHHhc-------------cceeeeeeeeeeccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4455666665555555432 2345666666666 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCchh--HHHHHHHHH
Q 007840 91 ETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTY--FRVFSALLF 168 (587)
Q Consensus 91 E~e~L~er~~~~~~~k~~fl~~vi~~~~~~~~~w~~~F~~L~~LK~fh~L~~dR~e~L~~sp~~~~~~h--~R~~~lL~~ 168 (587)
|.|+++|++| |++...+|.. .++++.... .+..++..|+|+|+||||+++|.|.+. -.++..+.| -|..+.+++
T Consensus 73 E~e~~~E~l~-~tlt~~ll~i-S~F~e~i~f-s~~~l~~~Ll~~kvfhwil~~R~er~~-~~st~~~~~ifSrfS~~~~l 148 (491)
T COG5243 73 ELELLYEQLW-ITLTEILLAI-SVFREAISF-SFFMLLSTLLFAKVFHWILSFRTERLQ-IQSTDQRFHIFSRFSCAYFL 148 (491)
T ss_pred HHHHHHHhhH-HHHHHHHHHH-HHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 5555444443 344442211 245677888999999999999999864 223444444 599999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhhhhhhcccchh
Q 007840 169 VLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLE 248 (587)
Q Consensus 169 ll~~d~~~i~~~~~~~~~~g~~~~ll~~fE~~~l~~~tl~~~l~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~g~~we 248 (587)
+.++|..+|..|+..-...+.++..++..|+... ...++. +++..+... ++.++ .-+
T Consensus 149 L~ild~~li~~CiSs~~liD~~~lfL~~c~F~~~-ll~l~s-----------------~~n~~cV~n--~~~~d---dDd 205 (491)
T COG5243 149 LSILDASLIYLCISSEHLIDKSTLFLFVCEFSVL-LLNLTS-----------------EANKLCVYN--YEARD---DDD 205 (491)
T ss_pred HHHHhHHHHHHHhhhHhhhhhhHHHHHHHHHHHH-HHHHHH-----------------hhcccceee--ccccc---ccc
Confidence 9999999999998643333333322222332211 111110 011111100 00000 113
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh
Q 007840 249 WKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATS 328 (587)
Q Consensus 249 ~kg~~i~y~~f~~dl~~~~~~l~~~l~~~~~~g~~~~l~~~vl~~~lr~~~~~~~~r~~~~~~~r~~~~~l~~~~p~~~~ 328 (587)
.|..+.+|.++..|=++++.+-..+...+..+.+|+.+++.++ .. +..+.+|++.+.+++++.+++++.+|.++.
T Consensus 206 ~rs~~~f~~~v~y~g~tllays~l~~~~~~~~r~Pi~l~r~~~-t~----~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~ 280 (491)
T COG5243 206 ERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVPIYLIRQMY-TC----FYALFRRIREHARFRRATKDLNAMYPTATE 280 (491)
T ss_pred cceeeeeeeehHHHHHHHHHHHHHHHhhccchhchHHHHHHHH-HH----HHHHHHHHHHHHHHHHHhhHHHhhcchhhh
Confidence 4566667778888877877777777777777788988887754 33 446778899999999999999999999999
Q ss_pred hhhhcCCCCCccccccc-c------------cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 329 EELRAYDDECAICREPM-A------------KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 329 ~~l~~~~~~C~IC~e~~-~------------~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
|++.+.|..|.||+|++ . .|++|||||++|.+|++.|+++ +++||+||.++.-
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER----qQTCPICr~p~if 346 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER----QQTCPICRRPVIF 346 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh----ccCCCcccCcccc
Confidence 99999999999999994 3 2589999999999999999999 6999999999643
No 2
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-38 Score=348.92 Aligned_cols=516 Identities=27% Similarity=0.250 Sum_probs=352.1
Q ss_pred HHHHHHHHhhHHHHhhhhhhhccccceeccccccchhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHcccCcHH
Q 007840 11 ASTILSFVGLQFWTEFSLDKLRTDGLVVENVIHLESANRVLELLLRSYATVALLANFVLNVFVLINLCLKTIFFGELYPA 90 (587)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~vl~N~~~~~~~l~~~~lq~lfFG~LR~~ 90 (587)
.+.+++..+..++++.+.. |++++.+++++++.+++++.|+.++...++++.+|.+|||.|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~----------------q~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~sl~~~~~g~l~~~ 67 (543)
T KOG0802|consen 4 RSSALATIKTIFSAYLGSA----------------QSISTTVLLLSSPTSLAVLLNRALVVLALILLSLQLIFFGALLLS 67 (543)
T ss_pred hhhHHHHHHHHHHHHHhhh----------------cccccceeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555565555555443 488999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCchhHHHHHHHHHH
Q 007840 91 ETRKFVERLINYVIYKGTFLP-LVIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFV 169 (587)
Q Consensus 91 E~e~L~er~~~~~~~k~~fl~-~vi~~~~~~~~~w~~~F~~L~~LK~fh~L~~dR~e~L~~sp~~~~~~h~R~~~lL~~l 169 (587)
|.||+.|++|+|.+++.+|.. .+.+++.+. ..|..|+.+++++|+||||+++|+++|+++|..+.+.|+|+...+..+
T Consensus 68 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~~l 146 (543)
T KOG0802|consen 68 EAEHLSHSLWNLIGLKYTFLLGYVTFRTVLS-ELFSLWLLLLLFLHVFHLLASDRLPRLFFSPLITTLNHFRVVSVLFAL 146 (543)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccchhh-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcchhhhhhhhHHHHHHHH
Confidence 999999999999999999987 344566777 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhhhhhhcccchh
Q 007840 170 LAVDIFWIRMCLLLFK-TLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLE 248 (587)
Q Consensus 170 l~~d~~~i~~~~~~~~-~~g~~~~ll~~fE~~~l~~~tl~~~l~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~g~~we 248 (587)
...|...+..++.... +.|.++.+.+.|+.+++.+.+....+.|.++..+ +. . -..|+
T Consensus 147 ~~~~~~~~~~s~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~l~~~~-----------~~--------~--~~~~~ 205 (543)
T KOG0802|consen 147 LIVDGHLVYNSLKTAYRTYGLSMLIELTFPSLLVVFWTALVILQYVLHSTA-----------DH--------I--HIRSE 205 (543)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhheeccchHHHHHHHHHHHHHHHHHHhcch-----------hh--------c--CcccC
Confidence 9999988877776544 7788888888899988877777666665443211 00 0 12357
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCCCC
Q 007840 249 WKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGH-LHAALPDAT 327 (587)
Q Consensus 249 ~kg~~i~y~~f~~dl~~~~~~l~~~l~~~~~~g~~~~l~~~vl~~~lr~~~~~~~~r~~~~~~~r~~~~~-l~~~~p~~~ 327 (587)
++..+.++.+...+...+...+.++.+.+..+++++++.+.+.... +....++.+...+.++.... +...++.++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (543)
T KOG0802|consen 206 DLSLLTFTLIIFGCMTLLVLLIMSAVISLVVHGILLGLVADLYNTP----FLEVERRLRELAPLRRVILATLQTGLPGAT 281 (543)
T ss_pred ccceeechhHHHhhhhHHHHHhhhHHHHHHHhHhhhhhhHHHhhhh----hhhHHHHccchHHHHHHhhccccccccccC
Confidence 7888888888888888888888888888888888888887644322 35667777888888888777 888899999
Q ss_pred hhh--hhcCCCCCccccccccc-----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCCcccccCCCCCCCC
Q 007840 328 SEE--LRAYDDECAICREPMAK-----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVS 400 (587)
Q Consensus 328 ~~~--l~~~~~~C~IC~e~~~~-----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~ 400 (587)
.++ +.+.++.|+||+|.+.. ++++||||+||..|+++|+++ .++||+||..+.................
T Consensus 282 ~~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er----~qtCP~CR~~~~~~~~~~~~~~~~~~~~ 357 (543)
T KOG0802|consen 282 LEERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER----QQTCPTCRTVLYDYVLWQIAALQTWLLV 357 (543)
T ss_pred hHHhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH----hCcCCcchhhhhccccccccCCcccccc
Confidence 887 77789999999999988 789999999999999999999 6999999996554332221111111111
Q ss_pred ChHHHHhhhccCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCccCCCCCCCccccCCCCCCCCCCCCccccc-ccchhhH
Q 007840 401 SDEQLARQLSMGLDRQNNTG--QTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRS-VGLSRVQ 477 (587)
Q Consensus 401 ~~~~~~~~~~~g~~~~~~~~--h~~~~~~~p~~~~~~~~~~~w~~aG~~~s~~~~~~~~~~dg~~~s~~~r~-~~~~~iq 477 (587)
.......+ ....+. +..+....+.......+...++-..+...+...+..++....+.+...+. ++...++
T Consensus 358 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (543)
T KOG0802|consen 358 VTTKSALE------VLKVPVSLATYTLFMVETRREEPWENLDDLIYYVRSTGNSIEFLFGKVVFGNGASPVIFESGSQIR 431 (543)
T ss_pred ccceeccc------ccccccccccCcccccccccccccCCCcchhhhcCccchhhHhhhhhhcccccchhheecCCcccc
Confidence 11111111 111111 01011111111111111211222222233433333333332233222222 2223444
Q ss_pred HHhhhhhcccccccccccccCccc-cCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCccccccccccccchHhHHHHHHHH
Q 007840 478 MMMRHLASVGETYAQTAIEDTSWS-LWPMNPSQASASGSPVPPAVPGRH-PGNTGGAHARSTSRSANENIANILAMAETV 555 (587)
Q Consensus 478 ~~~~~l~s~~~~~~~~~~~~~~~~-~~p~~~s~~s~~~s~~~~~~~~~~-~~~~~~~~~R~~~~~~~~~~~~~~~m~~~v 555 (587)
..+....+..+.+.. .+...++ .+++.+.+...+.+...|+.-.+. +....+.+.+ ..+.++....-..++...|
T Consensus 432 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 508 (543)
T KOG0802|consen 432 AAMMCIHSYFNIYLR--AEPGWSSFLNRRSAVKKINSLSEATPSQLREPNDVCAICYQEM-SARITPCSHALCLRKWLYV 508 (543)
T ss_pred ccceeeeeecccccc--cccccCcccCccccccccCCCCCCChhhhhcccCcchHHHHHH-HhccccccchhHHHhhhhh
Confidence 555555555555555 2222222 455666666666655555443332 2223333333 1222221135567778899
Q ss_pred hhhCCCCchHHHHHHhhccCChhHHH
Q 007840 556 REVLPHMPEDLIFQDLQRTNSATITV 581 (587)
Q Consensus 556 ~~~~p~~p~~~~~~~l~~~~~~~~t~ 581 (587)
+|+-|+.|.++..+|-..+++...|.
T Consensus 509 ~~~~pl~~~~~~~~~~~~~~~~~~~~ 534 (543)
T KOG0802|consen 509 QEVCPLCHTYMKEDDFLSKNSSESTA 534 (543)
T ss_pred ccccCCCchhhhcccccCccccccch
Confidence 99999999999999988888877663
No 3
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.70 E-value=8.3e-19 Score=182.59 Aligned_cols=135 Identities=23% Similarity=0.446 Sum_probs=107.2
Q ss_pred CCCccccccccccc----ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCCcccccCCCCCCCCChHH-----HH
Q 007840 336 DECAICREPMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQ-----LA 406 (587)
Q Consensus 336 ~~C~IC~e~~~~~~----~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~~~~-----~~ 406 (587)
++||||+|.|++.+ .+.|.|.||..|+..|.. .+||+||.... |.......+..++..++ +|
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~---p~~ve~~~c~~c~~~~~LwicliC 246 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS---PSVVESSLCLACGCTEDLWICLIC 246 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc------CcChhhhhhcC---cchhhhhhhhhhcccccEEEEEEc
Confidence 59999999998753 468999999999999986 59999998765 22334455666666665 59
Q ss_pred hhhccCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCccCCCCCCCccccCCCCCCCCCC-----CCcccccccchhhHHH
Q 007840 407 RQLSMGLDRQNNTG-QTL-PTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAG-----PSTAMRSVGLSRVQMM 479 (587)
Q Consensus 407 ~~~~~g~~~~~~~~-h~~-~~~~~p~~~~~~~~~~~w~~aG~~~s~~~~~~~~~~dg~~-----~s~~~r~~~~~~iq~~ 479 (587)
+..++|+|.++|+. |+. +.|+|.+++ +++++||||| |+||||+.+.+.||+. .....+..+.+.++.+
T Consensus 247 g~vgcgrY~eghA~rHweet~H~yalel---~tqrVWDYAG--DnYVhRl~~~~~dGklve~~~~~~~~~~~~~~~~~~~ 321 (493)
T KOG0804|consen 247 GNVGCGRYKEGHARRHWEETGHCYALEL---ETQRVWDYAG--DNYVHRLPQSKTDGKLVESSTEGDDSRKDDCDSLELE 321 (493)
T ss_pred cceecccccchhHHHHHHhhcceEEEee---cceeeeeccc--chhhhhccccCCCCceEEeccccccccccCcceEEee
Confidence 99999999999998 888 999999999 7899999999 9999999999999983 1222244555556666
Q ss_pred hhhhh
Q 007840 480 MRHLA 484 (587)
Q Consensus 480 ~~~l~ 484 (587)
++.+.
T Consensus 322 ~s~ll 326 (493)
T KOG0804|consen 322 YSPLL 326 (493)
T ss_pred cchhh
Confidence 55554
No 4
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.4e-12 Score=133.62 Aligned_cols=74 Identities=31% Similarity=0.626 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhcC--CCCCcccccccccc---cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 310 IKLRIALGHLHAALPDATSEELRAY--DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 310 ~~~r~~~~~l~~~~p~~~~~~l~~~--~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+.++..+++.+++|..+..+..+. .++|+||+|+|.++ +.|||+|.||..|+++||.+. +..||+||+++.
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~ 278 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIR 278 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCC
Confidence 3455566666677777765444321 14899999999876 457999999999999999985 467999999876
Q ss_pred cC
Q 007840 385 VG 386 (587)
Q Consensus 385 ~~ 386 (587)
..
T Consensus 279 ~~ 280 (348)
T KOG4628|consen 279 TD 280 (348)
T ss_pred CC
Confidence 54
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.16 E-value=1e-11 Score=91.93 Aligned_cols=41 Identities=49% Similarity=1.176 Sum_probs=35.0
Q ss_pred CCCccccccccc---ccccccCCcchHHHHHHHHHhCCCCCCCCcCcC
Q 007840 336 DECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (587)
Q Consensus 336 ~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (587)
++|+||++++.+ ...++|||.||.+|+.+|+++ +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 479999999964 467899999999999999999 57999997
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.98 E-value=4.5e-10 Score=112.10 Aligned_cols=47 Identities=38% Similarity=0.924 Sum_probs=39.8
Q ss_pred CCCCCcccccccccc--------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKA--------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~--------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+.+|+||++.+.++ +..+|+|.||..|+.+|+++ +.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCEee
Confidence 357899999997653 34589999999999999987 589999999875
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.97 E-value=6.4e-10 Score=106.74 Aligned_cols=55 Identities=27% Similarity=0.624 Sum_probs=45.1
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCC------------CCCCCCcCcCcccccCCc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL------------NEMYSCPTCRKPLFVGRR 388 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~------------~~~~~CP~CR~~l~~~~~ 388 (587)
.+.+|+||++.+++++.++|||.||..||.+|+.... .....||+||.++...+.
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 3568999999999999999999999999999986421 124689999999876443
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.3e-10 Score=112.72 Aligned_cols=50 Identities=24% Similarity=0.706 Sum_probs=44.9
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+.+..|.+|+|....|..+||||+||+.||.+|+.. ...||.||....+.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e----k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE----KAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc----ccCCCcccccCCCc
Confidence 455789999999999999999999999999999998 57899999987654
No 9
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.92 E-value=4.7e-10 Score=92.33 Aligned_cols=43 Identities=49% Similarity=1.143 Sum_probs=34.8
Q ss_pred CCCCCcccccccccc-------------cccccCCcchHHHHHHHHHhCCCCCCCCcCcC
Q 007840 334 YDDECAICREPMAKA-------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~-------------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (587)
.++.|+||++++.++ ...+|||.||..||.+|+++ +.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 356799999999432 23489999999999999998 57999998
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.91 E-value=6.1e-10 Score=81.57 Aligned_cols=42 Identities=31% Similarity=0.759 Sum_probs=33.0
Q ss_pred CcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 338 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 338 C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
|+||++.|.+|+.|+|||+||..||.+|.++.......||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998754333689988
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.3e-10 Score=108.09 Aligned_cols=52 Identities=31% Similarity=0.701 Sum_probs=45.8
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
.-+|.||+|.-++|+.+.|||.||+.||.+|++.... ++.||+||..+..+.
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~-~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPN-SKECPVCKAEVSIDT 98 (230)
T ss_pred ceeeeeeccccCCCEEeecccceehHHHHHHHhhcCC-CeeCCccccccccce
Confidence 4589999999999999999999999999999987543 678999999987654
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.73 E-value=5.5e-09 Score=79.48 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=40.2
Q ss_pred CCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
+..|.||++...+...+||||. ||..|..+|+++ ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR----KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT----TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc----CCCCCcCChhhc
Confidence 3579999999999889999999 999999999996 689999999874
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.1e-09 Score=105.05 Aligned_cols=48 Identities=38% Similarity=0.830 Sum_probs=41.0
Q ss_pred CCCCcccccccccc---cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+-+|+||++.+.+. +.|||.|.||..|+.+|+... +..||+||.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y---~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY---SNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh---cccCCccCCCCCC
Confidence 45899999999654 457999999999999999854 5789999998865
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.69 E-value=7.9e-09 Score=74.45 Aligned_cols=38 Identities=29% Similarity=0.835 Sum_probs=33.3
Q ss_pred Ccccccccccc-cccccCCcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 338 CAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 338 C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
|+||++.+.++ +.++|||.||.+|+.+|+++ +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC----TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC----cCCCcCC
Confidence 89999999999 57899999999999999998 4899998
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=1.5e-08 Score=73.90 Aligned_cols=44 Identities=41% Similarity=1.057 Sum_probs=37.0
Q ss_pred CCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 337 ECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
+|+||++.+.++..+ +|||.||..|+..|++++ ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG---KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC---cCCCCCCCCcC
Confidence 599999999666555 499999999999999873 47899999753
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.67 E-value=1.3e-08 Score=84.99 Aligned_cols=51 Identities=37% Similarity=0.826 Sum_probs=39.6
Q ss_pred CCCCCccccccccc------------c-cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAK------------A-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~------------~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.|+.|.||+..|+. | +.-.|+|.||..||.+|++++.. +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 36789999988863 1 12279999999999999997533 5799999998643
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.58 E-value=4.7e-08 Score=77.63 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 337 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 337 ~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.|+||.+.+++|+.++|||+|++.|+.+|+++ +..||.|+.++..
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS----HGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH----CCCCCCCcCCCCh
Confidence 69999999999999999999999999999988 4799999988744
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.9e-08 Score=92.22 Aligned_cols=47 Identities=30% Similarity=0.733 Sum_probs=40.3
Q ss_pred CCCcccccccccc--cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..|+||++.+.+. +.+.|||+||..||+.-++. ...||+||+.+..+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~----~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN----TNKCPTCRKKITHK 180 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHh----CCCCCCcccccchh
Confidence 4799999999764 45799999999999999988 58999999977543
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=4.9e-08 Score=70.92 Aligned_cols=40 Identities=43% Similarity=1.032 Sum_probs=35.7
Q ss_pred Cccccccccccc-ccccCCcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 338 CAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 338 C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
|+||++.+.++. .++|||.||..|+.+|+++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 899999999998 88999999999999999952 26789998
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.52 E-value=7.3e-08 Score=93.60 Aligned_cols=52 Identities=29% Similarity=0.675 Sum_probs=39.2
Q ss_pred CCCCCccccccccc---------ccccccCCcchHHHHHHHHHhC--CCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAK---------AKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~---------~~~lpC~H~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~l~~ 385 (587)
.+.+|+||+|...+ +...+|+|.||..|++.|.+.. .....+||+||..+..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 46789999998632 2345899999999999999853 1123579999998653
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.47 E-value=1.3e-07 Score=66.60 Aligned_cols=39 Identities=41% Similarity=1.054 Sum_probs=34.8
Q ss_pred CcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 338 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 338 C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
|+||++....+..++|||.||..|+..|+++. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG---NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC---cCCCCCC
Confidence 89999998888889999999999999999843 5789988
No 22
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8.3e-06 Score=81.11 Aligned_cols=51 Identities=35% Similarity=0.821 Sum_probs=41.2
Q ss_pred CCCCCcccccccccc----------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKA----------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~----------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+|..|+||-..+... .+|.|+|+||..||+.|..-+. .++||.|+..+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK--kqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--KQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC--CCCCchHHHHhhHh
Confidence 567899998887532 3689999999999999986542 58999999987654
No 23
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=1.1e-07 Score=69.84 Aligned_cols=39 Identities=31% Similarity=0.810 Sum_probs=23.6
Q ss_pred Cccccccccc----ccccccCCcchHHHHHHHHHhCCCCCCCCc
Q 007840 338 CAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCP 377 (587)
Q Consensus 338 C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP 377 (587)
|+||+| +.+ |+.|+|||+|+.+|+.++..++......||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 889999999999999999987422245676
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.3e-06 Score=91.20 Aligned_cols=49 Identities=37% Similarity=0.871 Sum_probs=39.1
Q ss_pred CCCCCccccccccc------c-----------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAK------A-----------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~------~-----------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...+|+||+.+.+- + ..+||.|+||..|+.+|.+.. +..||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y---kl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY---KLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh---cccCCccCCCCCC
Confidence 34689999998752 1 135999999999999999953 4689999998864
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.5e-07 Score=99.56 Aligned_cols=56 Identities=27% Similarity=0.613 Sum_probs=46.4
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhC-CCCCCCCcCcCcccccCCccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVGRREI 390 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~l~~~~~~~ 390 (587)
+..||||+++...+..+.|||+||..||-+++... ...-..||+||..+..++..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 66899999999999999999999999999888764 223468999999998765443
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=2.5e-07 Score=98.96 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=43.0
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
....|+||.+.+..++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN----QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC----CCCCCCCCCcccc
Confidence 44589999999999999999999999999999987 4689999998754
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.3e-07 Score=92.23 Aligned_cols=49 Identities=33% Similarity=0.726 Sum_probs=42.7
Q ss_pred CCCCcccccccccccccccCCcchHHHHHH-HHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRS-WLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~-wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+..|+||++....+..++|||+||..||-. |-.+. ...||.||+...++
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k---~~~CplCRak~~pk 264 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK---YEFCPLCRAKVYPK 264 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhc---cccCchhhhhccch
Confidence 557999999999999999999999999998 88774 34599999987654
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.22 E-value=7e-07 Score=66.06 Aligned_cols=41 Identities=34% Similarity=0.844 Sum_probs=34.1
Q ss_pred CCcccccccc---cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 337 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~---~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
.|+||++++. .+..++|||+||..|+...... ...||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4999999993 3567899999999999998833 589999985
No 29
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.20 E-value=7e-07 Score=72.71 Aligned_cols=31 Identities=39% Similarity=0.876 Sum_probs=27.9
Q ss_pred ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 352 LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 352 pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.|+|.||..||..||.. +..||+||++....
T Consensus 53 ~CnHaFH~HCI~rWL~T----k~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT----KGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhh----CCCCCCCCceeEEe
Confidence 69999999999999998 58999999987654
No 30
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.1e-07 Score=71.76 Aligned_cols=50 Identities=34% Similarity=0.807 Sum_probs=38.4
Q ss_pred CCCCCccccccccc------------cccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAK------------AKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~------------~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+++|.||+-+|+. |..+ -|.|.||..||.+|+....+ +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc-cccCCcchheeE
Confidence 34588888888863 1122 69999999999999987544 478999999764
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.09 E-value=9.8e-07 Score=90.02 Aligned_cols=47 Identities=30% Similarity=0.606 Sum_probs=43.1
Q ss_pred CCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 337 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 337 ~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
.|.||.|.|..|..+||+|.||.-||+..|.. +..||.|+.++.+..
T Consensus 25 RC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~----~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHTFCSLCIRKFLSY----KPQCPTCCVTVTESD 71 (442)
T ss_pred HHhHHHHHhcCceeccccchHHHHHHHHHhcc----CCCCCceecccchhh
Confidence 69999999999999999999999999999988 689999999876643
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.05 E-value=2.1e-06 Score=70.61 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=38.4
Q ss_pred CCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 337 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 337 ~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.|+||.+-|.+|+.+||||+|.+.||..|+++. ...||.|+.++...
T Consensus 6 ~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~---~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 6 LCPITGELMRDPVILPSGHTYERSAIERWLEQN---GGTDPFTRQPLSES 52 (73)
T ss_dssp B-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT---SSB-TTT-SB-SGG
T ss_pred CCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC---CCCCCCCCCcCCcc
Confidence 799999999999999999999999999999984 58999999887653
No 33
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=97.96 E-value=6.9e-06 Score=60.13 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=35.0
Q ss_pred HHHHHHHhhhCCCCchHHHHHHh-hccCChhHHHHhhhcC
Q 007840 549 LAMAETVREVLPHMPEDLIFQDL-QRTNSATITVNNLLQM 587 (587)
Q Consensus 549 ~~m~~~v~~~~p~~p~~~~~~~l-~~~~~~~~t~~~~~~~ 587 (587)
..++++++|+||+++.+.|.++| +..++||.||++||+|
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 46889999999999999999999 7777999999999985
No 34
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=97.96 E-value=1.1e-05 Score=59.42 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHhh-ccCChhHHHHhhhcC
Q 007840 548 ILAMAETVREVLPHMPEDLIFQDLQ-RTNSATITVNNLLQM 587 (587)
Q Consensus 548 ~~~m~~~v~~~~p~~p~~~~~~~l~-~~~~~~~t~~~~~~~ 587 (587)
...++++++|+||+++.+.|.++|. .+++|+.||++||+|
T Consensus 2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4678999999999999999999999 999999999999986
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.95 E-value=2.3e-05 Score=81.66 Aligned_cols=48 Identities=35% Similarity=0.720 Sum_probs=40.9
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..|-||-|.=++.+.=||||..|..|+..|-..+ +++.||.||..+..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd--~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD--EGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccC--CCCCCCceeeEecc
Confidence 3599999988887778999999999999997654 36899999998854
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.91 E-value=3.9e-06 Score=84.05 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=42.5
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..|-||-+.+..+..++|||.||.-||+..|.. +..||+||.+....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~~~~es 72 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT----QPFCPVCREDPCES 72 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC----CCCCccccccHHhh
Confidence 479999999999999999999999999999987 68999999976543
No 37
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=5.9e-06 Score=70.66 Aligned_cols=46 Identities=37% Similarity=0.855 Sum_probs=35.7
Q ss_pred CCCccccccccc---------------ccc--cccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAK---------------AKK--LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~---------------~~~--lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+.|+||+..+-+ +.. =.|+|.||..|+.+|+++ +..||+|.++...
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt----r~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT----RNVCPLDNKEWVF 109 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh----cCcCCCcCcceeE
Confidence 679999865421 111 279999999999999999 6899999887654
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8e-06 Score=83.33 Aligned_cols=43 Identities=37% Similarity=0.702 Sum_probs=38.6
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (587)
..-.|+||++.+.+++.+||||.||..|+..+... ...||.||
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~----~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWEG----PLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcCC----CcCCcccC
Confidence 34589999999999988999999999999998872 58999999
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=2e-05 Score=81.35 Aligned_cols=50 Identities=28% Similarity=0.694 Sum_probs=37.6
Q ss_pred CCCCcccccc-ccccc-c-c--ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 335 DDECAICREP-MAKAK-K-L--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 335 ~~~C~IC~e~-~~~~~-~-l--pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
+..||+|... +..+. + + +|||.||..|+...+..+ ...||.|+.++...+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---SGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC---CCCCCCCCCccchhh
Confidence 4579999985 33332 1 2 799999999999976554 468999999887654
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=2e-05 Score=79.86 Aligned_cols=48 Identities=27% Similarity=0.602 Sum_probs=41.1
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+++|+||+....-|+.++|+|.||..||+.=...+ ...|++||.++..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd---k~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND---KKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcC---CCCCceecCCCCc
Confidence 56899999999999999999999999998655443 4789999999864
No 41
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.52 E-value=3.4e-05 Score=87.67 Aligned_cols=49 Identities=31% Similarity=0.752 Sum_probs=38.5
Q ss_pred CCCCCccccccccc-----c--cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAK-----A--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~-----~--~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.-.+|+||+..+.. | +.-.|.|-||..|+.+|....+ +.+||.||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCccccccc
Confidence 34689999987652 1 2336999999999999998854 589999997764
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.5e-05 Score=58.41 Aligned_cols=47 Identities=32% Similarity=0.629 Sum_probs=37.7
Q ss_pred CCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
+++|.||+|.-.+.+.-.|||. .|.+|-.+-+... +..||+||+++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~---~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL---HGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc---CCcCcchhhHHH
Confidence 4789999999888888899998 6889965544432 689999999874
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.49 E-value=2.3e-05 Score=64.03 Aligned_cols=50 Identities=30% Similarity=0.608 Sum_probs=25.0
Q ss_pred CCCcccccccc-c---ccc----cccCCcchHHHHHHHHHhCCC-------CCCCCcCcCccccc
Q 007840 336 DECAICREPMA-K---AKK----LLCNHLFHLACLRSWLDQGLN-------EMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~-~---~~~----lpC~H~Fh~~Cl~~wl~~~~~-------~~~~CP~CR~~l~~ 385 (587)
.+|.||++... . +.. -.|++.||..||.+|+....+ ....||.|+.++.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 47999999865 2 222 279999999999999975311 12359999998753
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=9.4e-05 Score=83.67 Aligned_cols=48 Identities=21% Similarity=0.573 Sum_probs=42.6
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
-.|+.|-+...+.+...|||+||..|+..-+... ...||.|-.++...
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR---qRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR---QRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh---cCCCCCCCCCCCcc
Confidence 4799999999999999999999999999999875 68999999887653
No 45
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=97.45 E-value=0.01 Score=65.17 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh-HHHHHH
Q 007840 127 WLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEP-LSVAFE 205 (587)
Q Consensus 127 ~F~~L~~LK~fh~L~~dR~e~L~~sp~~~~~~h~R~~~lL~~ll~~d~~~i~~~~~~~~~~g~~~~ll~~fE~-~~l~~~ 205 (587)
+..+-.+++..|-+.+..+-.|.+|.+.+.++|+|.+++.++++++.+++. +..+++...+++++...-+ +...++
T Consensus 349 ~lv~ta~Lh~~~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~~---y~l~~~~~i~tWll~v~s~~~~t~vk 425 (508)
T PF13705_consen 349 FLVLTALLHSLHEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYLS---YYLWSFFPIDTWLLIVTSFCVETIVK 425 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 344446999999999999999999999999999999999999999988754 5556667778877655443 334577
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 007840 206 TMQAILVHGFQLLDIWLHHSAGN 228 (587)
Q Consensus 206 tl~~~l~~~~~l~d~~~~~~~~~ 228 (587)
++.++.+|+++++|.+....+++
T Consensus 426 v~~sl~iY~Lf~vd~~~~~~WE~ 448 (508)
T PF13705_consen 426 VLGSLAIYILFMVDARREEPWEK 448 (508)
T ss_pred HHHHHHHHHHHHHHhhcccchhh
Confidence 88889999999999876544443
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.3e-05 Score=78.29 Aligned_cols=49 Identities=33% Similarity=0.661 Sum_probs=41.6
Q ss_pred cCCCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+...+|.||+.+-++...|||.|. .|..|-+..--+ ...||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q----~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ----TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh----hcCCCccccchHh
Confidence 345689999999999999999998 699998876655 4789999999754
No 47
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.44 E-value=0.00011 Score=55.65 Aligned_cols=42 Identities=24% Similarity=0.694 Sum_probs=32.2
Q ss_pred CCccccccc--ccccccccC-----CcchHHHHHHHHHhCCCCCCCCcCcC
Q 007840 337 ECAICREPM--AKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCR 380 (587)
Q Consensus 337 ~C~IC~e~~--~~~~~lpC~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (587)
.|-||++.. +++...||. |.+|..|+.+|+.... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 489999832 334566986 8999999999998742 35899995
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.38 E-value=3.9e-05 Score=60.63 Aligned_cols=44 Identities=30% Similarity=0.859 Sum_probs=23.9
Q ss_pred CCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 337 ECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.|++|.+.+++|+.+ .|.|+||..|+..-+. ..||+|+.+-...
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~q 53 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQ 53 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGGGTT------TB-SSS--B-S-S
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHHhcC------CCCCCcCChHHHH
Confidence 799999999999865 8999999999977443 4699999886554
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=4.4e-05 Score=78.91 Aligned_cols=49 Identities=35% Similarity=0.664 Sum_probs=41.8
Q ss_pred CCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+-.|+||++-++....+ .|+|-||.+||..-+..+ +..||+||+.+..+
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g---n~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG---NNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---CCCCchHHhhcccc
Confidence 45799999999887766 499999999998888876 68999999987654
No 50
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=8.9e-05 Score=77.35 Aligned_cols=46 Identities=33% Similarity=0.884 Sum_probs=33.9
Q ss_pred CCCccccccccccccc----ccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 336 DECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l----pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
..|.||-+-+.....+ .|||+||..|+.+|.+..+. ...||.||-.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps-~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS-NRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc-cCCCCceeec
Confidence 4799994444333322 59999999999999997643 3689999943
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0003 Score=75.61 Aligned_cols=49 Identities=35% Similarity=0.686 Sum_probs=43.2
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..+-.|.||...+..++.+||||.||..||..-+.+ ...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~----~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ----ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc----CCCCccccccccc
Confidence 345689999999999999999999999999887766 6899999999875
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00058 Score=72.06 Aligned_cols=52 Identities=37% Similarity=0.767 Sum_probs=38.9
Q ss_pred CCCCCccccccccccc-----c---cccCCcchHHHHHHHHHhCC---CCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAK-----K---LLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~-----~---lpC~H~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~l~~ 385 (587)
.+.+|.||+|...+.. . .+|.|.||..|++.|-+... .-.+.||.||.....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3568999999876543 2 46999999999999984431 124789999987644
No 53
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0017 Score=67.95 Aligned_cols=44 Identities=25% Similarity=0.576 Sum_probs=34.4
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
..+.|.||.++..+.+.+||||+-| |..--.. ...||+||+.+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh-----CCCCchhHHHHH
Confidence 4578999999999999999999955 6533222 357999999874
No 54
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.67 E-value=0.0012 Score=71.48 Aligned_cols=61 Identities=28% Similarity=0.652 Sum_probs=47.6
Q ss_pred hCCCCChhhhhcCCCCCcccccccccccccccCCcchHHHHHHHHHhC-CCCCCCCcCcCcccccCC
Q 007840 322 ALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 322 ~~p~~~~~~l~~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~l~~~~ 387 (587)
.+++...++ -.|.+|-++-++.....|.|.||+.|+..++..- .+.+.+||+|...+..+.
T Consensus 528 n~~~enk~~-----~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 528 NLPDENKGE-----VECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CCCccccCc-----eeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 455544443 3799999999999999999999999999888653 122589999998887653
No 55
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0016 Score=63.56 Aligned_cols=54 Identities=33% Similarity=0.853 Sum_probs=44.4
Q ss_pred cCCCCCcccccccccc--cccccCCcchHHHHHHHHHhC----CCCCCCCcCcCcccccC
Q 007840 333 AYDDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQG----LNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~wl~~~----~~~~~~CP~CR~~l~~~ 386 (587)
+++..|..|-..+.+. .+|.|-|+||+.|+.+|..+- .+.+..||.|..++++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 4567899999988764 678999999999999998652 45578999999998763
No 56
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0011 Score=69.95 Aligned_cols=47 Identities=32% Similarity=0.814 Sum_probs=38.3
Q ss_pred CCCCCcccccccccc-----cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~-----~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
...+|+||++.+.-+ +.+.|||.|-.+|+..|+.+.. ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~--~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKT--KMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhh--hhhCcccCCh
Confidence 356899999998754 4578999999999999996432 4789999765
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.59 E-value=0.0012 Score=69.10 Aligned_cols=45 Identities=40% Similarity=0.910 Sum_probs=36.7
Q ss_pred CCCCccccccccc----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
+-.|..|-|.+.. -..|||.|+||..|+...++++. ..+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC--CCCCccHHH
Confidence 4479999887743 23579999999999999998865 479999994
No 58
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0064 Score=61.30 Aligned_cols=50 Identities=24% Similarity=0.637 Sum_probs=39.5
Q ss_pred cCCCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
..+.+|++|-+.-..|... +|||+||.-|+..=..-+. +.+||.|-.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 4567999999998888654 6999999999987554321 479999987765
No 59
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.0026 Score=72.63 Aligned_cols=68 Identities=21% Similarity=0.454 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhhcCCCCCccccccccccc-ccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 309 FIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 309 ~~~~r~~~~~l~~~~p~~~~~~l~~~~~~C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
..++++.++++++.+.......-.-....|..|...++-|. ...|||.||..|+. +. ...||.|+...
T Consensus 814 Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~----~~~CP~C~~e~ 882 (933)
T KOG2114|consen 814 IEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DK----EDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cC----cccCCccchhh
Confidence 34456666666554433321111112248999999999874 56899999999986 22 58999998743
No 60
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.45 E-value=0.00088 Score=75.33 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=27.8
Q ss_pred ccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 350 KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 350 ~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..+|+|.||..|+..|-.. .++||+||..+..
T Consensus 141 ~k~c~H~FC~~Ci~sWsR~----aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 141 EKHTAHYFCEECVGSWSRC----AQTCPVDRGEFGE 172 (1134)
T ss_pred ccccccccHHHHhhhhhhh----cccCchhhhhhhe
Confidence 3589999999999999988 5899999998643
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.45 E-value=0.0012 Score=63.28 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=38.0
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
-.|.||.++++.|+.+.|||.||..|.-.-.+. ...|-+|-+.
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k----g~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK----GDECGVCGKA 239 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc----CCcceecchh
Confidence 379999999999999999999999998776666 5899999765
No 62
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.43 E-value=0.0014 Score=66.55 Aligned_cols=53 Identities=28% Similarity=0.683 Sum_probs=39.5
Q ss_pred CCCCcccccccccc---cccccCCcchHHHHHHHHHhC-------------------CCCCCCCcCcCcccccCC
Q 007840 335 DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQG-------------------LNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 335 ~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~wl~~~-------------------~~~~~~CP~CR~~l~~~~ 387 (587)
...|.||+-.|.+. .+++|.|.||..|+..+|..- .+-...||+||..+....
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 45899999998764 467999999999997765430 111357999999986543
No 63
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0034 Score=65.04 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=42.7
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+|+.|+||...--..+..||+|.-|..||.+-+.+ .+.|=.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN----~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN----CKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc----CCeeeEecceeee
Confidence 46789999998888888999999999999999988 6899999998764
No 64
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.25 E-value=0.0019 Score=70.04 Aligned_cols=50 Identities=28% Similarity=0.580 Sum_probs=43.5
Q ss_pred cCCCCCcccccccccccc-cccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 333 AYDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~-lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+.+..|++|...+.+|.. ..|||.||..|+.+|+.. +..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN----HQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc----CcCCcccccccchh
Confidence 345689999999999988 599999999999999998 58999998886543
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.25 E-value=0.0018 Score=50.72 Aligned_cols=42 Identities=21% Similarity=0.535 Sum_probs=29.8
Q ss_pred CCCCcccccccccccc-cccCCcchHHHHHHHHHhCCCCCCCCcC
Q 007840 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPT 378 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~-lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~ 378 (587)
+..|||.+..+++|++ ..|||+|-++.|.+|++++ ....||+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 4589999999999976 4899999999999999442 2578998
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.07 E-value=0.0024 Score=66.02 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=41.4
Q ss_pred CCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..+|.+|-..+-++..+ -|-|.||+.||...++. ...||+|...+-..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH----hccCCccceeccCc
Confidence 34899999999888665 69999999999999998 58999998877554
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.90 E-value=0.014 Score=50.91 Aligned_cols=30 Identities=23% Similarity=0.882 Sum_probs=24.6
Q ss_pred CCCCCccccccccccc--ccccCCcchHHHHH
Q 007840 334 YDDECAICREPMAKAK--KLLCNHLFHLACLR 363 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~--~lpC~H~Fh~~Cl~ 363 (587)
.+..|++|...+.... ..||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4568999999987653 45999999999974
No 68
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.003 Score=64.23 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=39.7
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
...|-||..+|..|+.+.|+|.||..|-.+-+++ ...|++|-+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk----~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK----GEKCYVCSQQT 285 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc----CCcceeccccc
Confidence 3469999999999999999999999998877777 58999998764
No 69
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.63 E-value=0.012 Score=59.82 Aligned_cols=46 Identities=24% Similarity=0.651 Sum_probs=36.8
Q ss_pred CCCcccccccccccccc-cCCcchHHHHHHHHHhCCCCCCCCcCcCc-ccc
Q 007840 336 DECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRK-PLF 384 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~-~l~ 384 (587)
..|+.|..-+..+.++| |||.||.+||..-|... ...||.|.+ .+.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds---Df~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS---DFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc---cccCCCcccccch
Confidence 57999999999998885 89999999998665442 489999944 443
No 70
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.0038 Score=63.24 Aligned_cols=42 Identities=31% Similarity=0.698 Sum_probs=34.6
Q ss_pred CCCCcccccccccccccccCCcc-hHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLF-HLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~F-h~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
+..|+||++.-.+++.|+|||.- |.+|-.. -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr--------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR--------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc--------cccCchHHHHHH
Confidence 45799999999999999999974 7778533 358999999764
No 71
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.35 E-value=0.0088 Score=71.01 Aligned_cols=53 Identities=36% Similarity=0.706 Sum_probs=41.0
Q ss_pred cCCCCCcccccccc---cccccccCCcchHHHHHHHHHhCCCC------CCCCcCcCccccc
Q 007840 333 AYDDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNE------MYSCPTCRKPLFV 385 (587)
Q Consensus 333 ~~~~~C~IC~e~~~---~~~~lpC~H~Fh~~Cl~~wl~~~~~~------~~~CP~CR~~l~~ 385 (587)
+.|+.|.||..+-- .+..|.|+|+||..|.+.-|++...+ -.+||+|+.++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45778999987642 35789999999999999988875211 2579999998754
No 72
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=95.06 E-value=0.036 Score=41.09 Aligned_cols=38 Identities=34% Similarity=0.521 Sum_probs=32.7
Q ss_pred HHHHHHHhhhCCCCchHHHHHHhhccC-ChhHHHHhhhc
Q 007840 549 LAMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQ 586 (587)
Q Consensus 549 ~~m~~~v~~~~p~~p~~~~~~~l~~~~-~~~~t~~~~~~ 586 (587)
+....|++.||+--+.++|++.|++|| .|...|+|||-
T Consensus 10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhc
Confidence 457789999999999999999999998 68999999984
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.71 E-value=0.029 Score=52.54 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=38.0
Q ss_pred cCCCCCcccccccccccccccCC-----cchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 333 AYDDECAICREPMAKAKKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H-----~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..+..|-||.++-++ ..-||.- .-|.+|+..|+.... ...|+.|+.+...
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeEEE
Confidence 456789999998653 3457663 459999999998753 5789999998754
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.066 Score=57.03 Aligned_cols=50 Identities=26% Similarity=0.485 Sum_probs=35.3
Q ss_pred cCCCCCccccccccc---ccccccCCcchHHHHHHHHHhC----CCCCCCCcCcCcc
Q 007840 333 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQG----LNEMYSCPTCRKP 382 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~wl~~~----~~~~~~CP~CR~~ 382 (587)
...-.|.||++...- -+.+||+|+||+.|+..+.... .-....||-|...
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 344589999998643 3678999999999999987542 1113567766543
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.35 E-value=0.017 Score=44.40 Aligned_cols=46 Identities=26% Similarity=0.540 Sum_probs=36.3
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
..|..|...-.....+||||.-+..|-.-+- -+.||.|-+++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r------YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGER------YNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccChhh------ccCCCCCCCcccCCC
Confidence 3688888877778899999999999965432 368999999886653
No 76
>PHA02862 5L protein; Provisional
Probab=94.33 E-value=0.032 Score=51.25 Aligned_cols=48 Identities=21% Similarity=0.706 Sum_probs=37.0
Q ss_pred CCCCcccccccccccccccC-----CcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
++.|=||.++-++. .-||. ..-|.+|+.+|+... ....||.|+.+...
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S--~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYS--KKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcC--CCcCccCCCCeEEE
Confidence 46899999986544 45775 457999999999753 35799999998653
No 77
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.18 E-value=0.034 Score=41.77 Aligned_cols=43 Identities=26% Similarity=0.665 Sum_probs=20.8
Q ss_pred Cccccccccccc--cc--ccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 338 CAICREPMAKAK--KL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 338 C~IC~e~~~~~~--~l--pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
|++|.++++... .. +||+..|..|...-++.. ...||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~---~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE---GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS----SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc---CCCCCCCCCCC
Confidence 789999995432 23 688999999977666532 57999999863
No 78
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.88 E-value=0.033 Score=63.88 Aligned_cols=52 Identities=31% Similarity=0.809 Sum_probs=37.9
Q ss_pred hhcCCCCCccccccccccc-c---cccCCcchHHHHHHHHHhC---CCCCCCCcCcCcc
Q 007840 331 LRAYDDECAICREPMAKAK-K---LLCNHLFHLACLRSWLDQG---LNEMYSCPTCRKP 382 (587)
Q Consensus 331 l~~~~~~C~IC~e~~~~~~-~---lpC~H~Fh~~Cl~~wl~~~---~~~~~~CP~CR~~ 382 (587)
+.....+|.||.+.+.... . -.|-|+||..||+.|..+. ......||.|+..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 3344568999999987532 1 2588999999999998762 2235789999943
No 79
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.046 Score=56.95 Aligned_cols=45 Identities=31% Similarity=0.704 Sum_probs=38.2
Q ss_pred CCCccccccccc------ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 336 DECAICREPMAK------AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 336 ~~C~IC~e~~~~------~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
+.|-||-++|.. |+.|.|||.+|..|+.+-+... ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~---~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS---RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc---eeeccCCCCcc
Confidence 479999999964 5678899999999998877764 57899999985
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.16 Score=52.61 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=38.9
Q ss_pred cCCCCCcccccccccccccc-cCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 333 AYDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
.....|++|+..-.++..+. -|-+||..|+-+.+.+ ...||+--.+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~----~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN----YGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh----cCCCCccCCcc
Confidence 44568999999988876664 6999999999999997 68999876654
No 81
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.081 Score=52.67 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=40.3
Q ss_pred CCCCccccccccccc---c-cccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 335 DDECAICREPMAKAK---K-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~---~-lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
...||+|.+.+.+.. . -||||+|+.+|+...+..+ ..||+|-.++...+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D----~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD----MVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc----ccccCCCCcCcccc
Confidence 347999999997643 2 3999999999999988874 89999988876654
No 82
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.17 E-value=0.13 Score=54.73 Aligned_cols=33 Identities=27% Similarity=0.872 Sum_probs=25.2
Q ss_pred cCCcchHHHHHHHHHhCC---------CCCCCCcCcCccccc
Q 007840 353 CNHLFHLACLRSWLDQGL---------NEMYSCPTCRKPLFV 385 (587)
Q Consensus 353 C~H~Fh~~Cl~~wl~~~~---------~~~~~CP~CR~~l~~ 385 (587)
|...+|.+|+-+|+.... .++-.||+||++++.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 456789999999986542 236789999998764
No 83
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.98 E-value=0.069 Score=55.45 Aligned_cols=54 Identities=22% Similarity=0.498 Sum_probs=40.2
Q ss_pred CChhhhhcCCCCCcccccccccccccccCCcchHHHHHH--HHHhCCCCCCCCcCcCccc
Q 007840 326 ATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRS--WLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 326 ~~~~~l~~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~--wl~~~~~~~~~CP~CR~~l 383 (587)
.+.++-.+.+..|.||-+...-.-.+||+|-.|..|-.. -|.. .+.||.||...
T Consensus 52 sSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~----~K~C~~CrTE~ 107 (493)
T COG5236 52 SSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM----QKGCPLCRTET 107 (493)
T ss_pred ccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh----ccCCCcccccc
Confidence 334444455668999999988888899999999999532 2233 48999999874
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.94 E-value=0.069 Score=55.30 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=35.8
Q ss_pred CCCCCcccccccccccc----cccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+++-|+.|+|+++...+ -|||-..|.-|...--+. ....||-||+...+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~---lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN---LNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh---ccCCChHhhhhcccc
Confidence 45679999999986533 489988888886543333 247899999976543
No 85
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.86 E-value=0.043 Score=41.16 Aligned_cols=40 Identities=28% Similarity=0.684 Sum_probs=26.5
Q ss_pred Ccccccccccc--cccccC-----CcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 338 CAICREPMAKA--KKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 338 C~IC~e~~~~~--~~lpC~-----H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
|-||++.-.+. ...||+ -.-|..|+.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 67898876553 345776 3569999999998632 4679987
No 86
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=0.14 Score=59.47 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=27.0
Q ss_pred cCCCCCccccccccc-c-cccccCCcchHHHHHHHHH
Q 007840 333 AYDDECAICREPMAK-A-KKLLCNHLFHLACLRSWLD 367 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~-~-~~lpC~H~Fh~~Cl~~wl~ 367 (587)
+.++.|.+|.-++.. | ..-||||.||++|+.+-..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 346799999988753 2 4569999999999976543
No 87
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.00 E-value=0.058 Score=62.30 Aligned_cols=49 Identities=29% Similarity=0.572 Sum_probs=40.5
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
..|.||.+ .+.+...+|||.||.+|+..-++... ...||.||..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~--~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE--NAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc--CCCCcHHHHHHHHHH
Confidence 58999999 77778889999999999988887653 347999999876543
No 88
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.16 Score=48.26 Aligned_cols=50 Identities=30% Similarity=0.763 Sum_probs=35.6
Q ss_pred CCCccccccccc-------ccccccCCcchHHHHHHHHHhCCCC-------CCCCcCcCccccc
Q 007840 336 DECAICREPMAK-------AKKLLCNHLFHLACLRSWLDQGLNE-------MYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~-------~~~lpC~H~Fh~~Cl~~wl~~~~~~-------~~~CP~CR~~l~~ 385 (587)
..|.||+..--+ +....||.-||.-|+..||+.-... -..||.|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 369999865432 2346899999999999999752100 1369999988754
No 89
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.59 E-value=0.2 Score=46.94 Aligned_cols=34 Identities=35% Similarity=0.617 Sum_probs=25.4
Q ss_pred CCCCcccccccccccccc------------cCCc-chHHHHHHHHHh
Q 007840 335 DDECAICREPMAKAKKLL------------CNHL-FHLACLRSWLDQ 368 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp------------C~H~-Fh~~Cl~~wl~~ 368 (587)
+-+|+||+|.-.+++.|- |+-. -|..|+++..+.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA 48 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence 448999999988777653 5544 388999988654
No 90
>PHA03096 p28-like protein; Provisional
Probab=91.14 E-value=0.12 Score=53.51 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=32.3
Q ss_pred CCCcccccccccc-------ccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 336 DECAICREPMAKA-------KKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 336 ~~C~IC~e~~~~~-------~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
..|.||+|....- -.| .|.|.||..|++.|...... ...||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~-~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLY-KETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhh-cccCccccch
Confidence 4799999986431 123 69999999999999876432 3556666543
No 91
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.98 E-value=0.076 Score=48.53 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=25.3
Q ss_pred CCccccccccc--cc-ccccC------CcchHHHHHHHH
Q 007840 337 ECAICREPMAK--AK-KLLCN------HLFHLACLRSWL 366 (587)
Q Consensus 337 ~C~IC~e~~~~--~~-~lpC~------H~Fh~~Cl~~wl 366 (587)
+|.||++...+ ++ .++|| |.||.+|+..|-
T Consensus 28 EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 28 ECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred eehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 69999999987 43 45777 999999999994
No 92
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.27 E-value=1.1 Score=40.81 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=38.2
Q ss_pred CCCccccccccccccc----ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l----pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
-+|.||.|.-.+.+.| =||-..|..|-...++... ....||+|+.+....
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc-cCCCCCccccccccc
Confidence 3799999998887666 3999999999766555422 368999999987543
No 93
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.19 Score=57.00 Aligned_cols=60 Identities=37% Similarity=0.694 Sum_probs=49.9
Q ss_pred hhCCCCChhhhhcCCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCCc
Q 007840 321 AALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 388 (587)
Q Consensus 321 ~~~p~~~~~~l~~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~~ 388 (587)
..++.++.+++.+..+.|.+|++++ ..+..+|. |..|+..|+.. +..||.|+.....++.
T Consensus 465 ~~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~----~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 465 NSLSEATPSQLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYV----QEVCPLCHTYMKEDDF 524 (543)
T ss_pred CCCCCCChhhhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhh----ccccCCCchhhhcccc
Confidence 3566677888888889999999999 66777898 89999999988 5789999998766543
No 94
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.049 Score=57.46 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=40.0
Q ss_pred CCCccccccccc----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..|+||.+.+.. ...+-|||..|..||.+|+.. ...||.||+.+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhhh
Confidence 479999988764 456789999999999999998 57899999998653
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.80 E-value=0.19 Score=51.64 Aligned_cols=42 Identities=36% Similarity=0.836 Sum_probs=35.5
Q ss_pred CCCcccccccc----cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 336 DECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 336 ~~C~IC~e~~~----~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
..||||.+.+. .+..++|||.-|..|....... +.+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----GYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----CCCCCcccc
Confidence 34999999864 4567899999999999888877 589999988
No 96
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=1.1 Score=48.05 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=35.2
Q ss_pred CCCcccccccc---cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 336 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 336 ~~C~IC~e~~~---~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
-.|||=.+.-. .|.+|.|||+..++-+.+.-+.+. .+..||.|-..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS-QSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC-eeeeCCCCCcc
Confidence 37999877654 478999999999999988766542 24789999543
No 97
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.15 E-value=0.17 Score=50.60 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=28.5
Q ss_pred CCcccccccc-cc-cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 337 ECAICREPMA-KA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 337 ~C~IC~e~~~-~~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.|..|.-.-. ++ ..+.|+|+||..|...-. ...||+||+++..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~------~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS------PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC------ccccccccceeee
Confidence 3666654433 22 245899999999974311 2489999999654
No 98
>PF04641 Rtf2: Rtf2 RING-finger
Probab=87.02 E-value=0.49 Score=48.52 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=36.5
Q ss_pred CCCCcccccccccc---c-ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA---K-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~---~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.-.|||+..+|... + ..||||+|...|+.+-- . ...||+|-.++...
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~----~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K----SKKCPVCGKPFTEE 163 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c----cccccccCCccccC
Confidence 45799999999543 2 34999999999998863 2 36899999988754
No 99
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=0.24 Score=50.95 Aligned_cols=42 Identities=36% Similarity=0.775 Sum_probs=29.1
Q ss_pred CCccccccccc-ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 337 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 337 ~C~IC~e~~~~-~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.|--|--.+.. ++.+||.|+||.+|-+. +. .+.||.|-..+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~----dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DS----DKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--Cc----cccCcCcccHHH
Confidence 46666544433 46789999999999644 22 368999976653
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.23 E-value=0.55 Score=48.13 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=35.8
Q ss_pred CCccccccc-ccc-ccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 337 ECAICREPM-AKA-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 337 ~C~IC~e~~-~~~-~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.|++|..+- ..| .++ +|+|..|.+|.+.-...+ ...||.|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g---~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG---PAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC---CCCCCcccchhhhc
Confidence 599998763 232 222 999999999999988886 57999998776543
No 101
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.70 E-value=0.34 Score=54.25 Aligned_cols=39 Identities=26% Similarity=0.623 Sum_probs=30.7
Q ss_pred CCcccccccc----cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 337 ECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 337 ~C~IC~e~~~----~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.|.||+..|. .|+.+-|||..|..|+..-.. .+|| |+.+
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn------~scp-~~~D 55 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN------ASCP-TKRD 55 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHhh------ccCC-CCcc
Confidence 5999988875 467889999999999966443 5899 6554
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.85 E-value=0.58 Score=53.75 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=37.1
Q ss_pred CCCCCccccccccc--ccccccCC-----cchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAK--AKKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~lpC~H-----~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+.+|-||+.+-.+ |..-||.. --|.+|+.+|+.... ...|-+|+.+..-
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC--Ccceeeecceeee
Confidence 34689999987543 44447763 369999999998643 5789999998653
No 103
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.59 E-value=0.68 Score=34.05 Aligned_cols=40 Identities=25% Similarity=0.747 Sum_probs=22.6
Q ss_pred Cccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 338 CAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 338 C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
|.+|.+-...+.+= .|+=.+|..|+..++.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 67787776666543 3888999999999988742 2369988
No 104
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.95 E-value=0.36 Score=58.15 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=38.3
Q ss_pred CCCcccccccc-cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 336 DECAICREPMA-KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 336 ~~C~IC~e~~~-~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
..|.||.+.+. .+-...|||.+|..|...|+.. +..||.|+...
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~----~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA----SSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH----hccCcchhhhh
Confidence 47999999998 4556789999999999999998 68999998543
No 105
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=83.75 E-value=0.5 Score=50.64 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=29.7
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHh
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 368 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~ 368 (587)
+..|+||-.-|++|..|||+|..|..|-+.-+.+
T Consensus 4 elkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 4 ELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 3479999999999999999999999998765554
No 106
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.96 E-value=0.45 Score=44.55 Aligned_cols=31 Identities=29% Similarity=0.670 Sum_probs=24.4
Q ss_pred hhhhcCCCCCcccccccccc---cccccCCcchH
Q 007840 329 EELRAYDDECAICREPMAKA---KKLLCNHLFHL 359 (587)
Q Consensus 329 ~~l~~~~~~C~IC~e~~~~~---~~lpC~H~Fh~ 359 (587)
+.+.+...+|.||+|++... -+|||-.+||+
T Consensus 171 DVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 171 DVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred chhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34445667999999999865 46899999986
No 107
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.53 E-value=0.62 Score=46.20 Aligned_cols=40 Identities=38% Similarity=0.708 Sum_probs=30.5
Q ss_pred CCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 337 ECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 337 ~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.|-.|.+.-.....+||.|. +|..|-.. -..||+|+....
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES--------LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc--------CccCCCCcChhh
Confidence 39999988777778899987 67788533 257999997643
No 108
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=80.25 E-value=0.52 Score=53.87 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=39.8
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+|+||.+.+.++..+.|.|.|+..|+..-+..... ...||+|+..+..
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHHHhhhhhceeeccCc-cccchhhhhhhhh
Confidence 479999999999999999999999998765554322 4789999976653
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.10 E-value=1.1 Score=45.80 Aligned_cols=35 Identities=29% Similarity=0.627 Sum_probs=26.2
Q ss_pred ccCCcchHHHHHHHHHhC---------CCCCCCCcCcCcccccC
Q 007840 352 LCNHLFHLACLRSWLDQG---------LNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 352 pC~H~Fh~~Cl~~wl~~~---------~~~~~~CP~CR~~l~~~ 386 (587)
-|....|.+|+-+|.... ..++.+||+||+..+..
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 466889999999987542 12367999999998754
No 110
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=77.98 E-value=0.83 Score=34.13 Aligned_cols=43 Identities=33% Similarity=0.682 Sum_probs=24.9
Q ss_pred CCcccccccccccccccC-CcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 337 ECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 337 ~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.|--|+-.. .-...|. |-.|..|+...+.+ +..||+|..+++.
T Consensus 4 nCKsCWf~~--k~Li~C~dHYLCl~CLt~ml~~----s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFAN--KGLIKCSDHYLCLNCLTLMLSR----SDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SS----SSEETTTTEE---
T ss_pred cChhhhhcC--CCeeeecchhHHHHHHHHHhcc----ccCCCcccCcCcc
Confidence 366666432 2235687 88999999998887 6899999998875
No 111
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.73 E-value=1.7 Score=49.85 Aligned_cols=25 Identities=28% Similarity=0.717 Sum_probs=21.9
Q ss_pred ccccCCcchHHHHHHHHHhCCCCCCCCcC
Q 007840 350 KLLCNHLFHLACLRSWLDQGLNEMYSCPT 378 (587)
Q Consensus 350 ~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~ 378 (587)
...|+|+-|.+|...|++. +..||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~----gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRT----GDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhc----CCcCCC
Confidence 4689999999999999998 478885
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=76.72 E-value=1.3 Score=44.19 Aligned_cols=47 Identities=30% Similarity=0.670 Sum_probs=34.9
Q ss_pred CCCCCccccccc-ccc-cc-c--c-cCCcchHHHHHHHHHhCCCCCCCCc--CcCccc
Q 007840 334 YDDECAICREPM-AKA-KK-L--L-CNHLFHLACLRSWLDQGLNEMYSCP--TCRKPL 383 (587)
Q Consensus 334 ~~~~C~IC~e~~-~~~-~~-l--p-C~H~Fh~~Cl~~wl~~~~~~~~~CP--~CR~~l 383 (587)
.+..||+|..+- -.| .+ + | |-|..|.+|++.-+..+ ...|| -|-+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G---pAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG---PAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC---CCCCCCccHHHHH
Confidence 345899998763 333 22 2 5 99999999999999886 57899 786544
No 113
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.55 E-value=1.4 Score=44.50 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=36.6
Q ss_pred CCCCCcccccccccccc----cccC-----CcchHHHHHHHHHhCCC----CCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKAKK----LLCN-----HLFHLACLRSWLDQGLN----EMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~----lpC~-----H~Fh~~Cl~~wl~~~~~----~~~~CP~CR~~l~ 384 (587)
.+..|=||++.=++... -||. |--|.+|+..|.+.+.. ..-.||-|+....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34579999987665432 2774 77899999999976421 2357999998754
No 114
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=75.51 E-value=1.7 Score=45.44 Aligned_cols=42 Identities=31% Similarity=0.740 Sum_probs=33.0
Q ss_pred CCCccccccccccccccc--CCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAKAKKLLC--NHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC--~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
-+||||.+.+..|. ..| ||.-|..|=.+ . ...||.||.++..
T Consensus 49 leCPvC~~~l~~Pi-~QC~nGHlaCssC~~~---~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPI-FQCDNGHLACSSCRTK---V----SNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCcccc-eecCCCcEehhhhhhh---h----cccCCcccccccc
Confidence 37999999998874 455 69999998543 2 4789999999864
No 115
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.60 E-value=2 Score=49.50 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=35.7
Q ss_pred CCCCCccccccccccc----ccc---cCCcchHHHHHHHHHhC--CCCCCCCcCcCccc
Q 007840 334 YDDECAICREPMAKAK----KLL---CNHLFHLACLRSWLDQG--LNEMYSCPTCRKPL 383 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~----~lp---C~H~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~l 383 (587)
..++|.+|+-++..++ .+| |+|.||..||..|.++- ....-.|+.|...+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3468888888877632 344 99999999999999873 22234577776654
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=66.69 E-value=2.3 Score=32.30 Aligned_cols=45 Identities=27% Similarity=0.640 Sum_probs=21.6
Q ss_pred CCccccccccccccc-ccCCcchHHHHHHHHHhCC-CCCCCCcCcCcc
Q 007840 337 ECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGL-NEMYSCPTCRKP 382 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~-~~~~~CP~CR~~ 382 (587)
.|++....+..|.+- .|.|.-|.+ +..|++... .....||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 699999999888664 799984432 456664421 114679999864
No 117
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=66.10 E-value=3.4 Score=40.65 Aligned_cols=43 Identities=23% Similarity=0.648 Sum_probs=34.2
Q ss_pred CCCccccccccccc-ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 336 DECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 336 ~~C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
..|.+|.+-.-.++ .=.||-.+|..|+...+++ ...||.|-.-
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~----~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR----RDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc----cCcCCchhcc
Confidence 37999998755444 3478888999999999998 5899999543
No 118
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.87 E-value=3.8 Score=47.46 Aligned_cols=35 Identities=26% Similarity=0.588 Sum_probs=27.6
Q ss_pred CCCCCcccccccc-------cccccccCCcchHHHHHHHHHh
Q 007840 334 YDDECAICREPMA-------KAKKLLCNHLFHLACLRSWLDQ 368 (587)
Q Consensus 334 ~~~~C~IC~e~~~-------~~~~lpC~H~Fh~~Cl~~wl~~ 368 (587)
.++.|.-|.++.. ..+.+.|||+||..|+..-..+
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~ 824 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR 824 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh
Confidence 4558999998754 3456799999999999877666
No 119
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=64.11 E-value=27 Score=42.60 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=32.8
Q ss_pred HHHHHHHhhhCCCCchHHHHHHhhccC-ChhHHHHhhhc
Q 007840 549 LAMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQ 586 (587)
Q Consensus 549 ~~m~~~v~~~~p~~p~~~~~~~l~~~~-~~~~t~~~~~~ 586 (587)
+....++|.||---..++|++.|+||+ .|.-.|+|+|.
T Consensus 190 EELInnaQqVLQGKSRdVIIRELQRTgLdVNeAVNNLLS 228 (3015)
T KOG0943|consen 190 EELINNAQQVLQGKSRDVIIRELQRTGLDVNEAVNNLLS 228 (3015)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHhCCcHHHHHHhhhc
Confidence 455677788888899999999999998 79999999984
No 120
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=61.84 E-value=4.2 Score=42.31 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=36.7
Q ss_pred CCCCcccccccccc----cccccC-----CcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKA----KKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~----~~lpC~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|-||.++.... ...||. +..|..|+..|..... ...|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc--Ceeeeccccccee
Confidence 36799999976543 456776 5679999999998432 5789999886544
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.63 E-value=7.8 Score=42.14 Aligned_cols=35 Identities=29% Similarity=0.640 Sum_probs=25.9
Q ss_pred CCCCcccccccccc----cccccCCcchHHHHHHHHHhC
Q 007840 335 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQG 369 (587)
Q Consensus 335 ~~~C~IC~e~~~~~----~~lpC~H~Fh~~Cl~~wl~~~ 369 (587)
..+|.||..+...+ ....|+|.||.+|..+.++..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 34799999443332 245799999999999888753
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=58.29 E-value=8.1 Score=40.65 Aligned_cols=46 Identities=30% Similarity=0.598 Sum_probs=34.3
Q ss_pred CCCccccccccccc----ccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~~~----~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..|+||.++..... -.||++.-|..|+..-... ..+||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc----CCCCCccCCcccc
Confidence 68999999885432 2378888888888766655 5899999966543
No 124
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.16 E-value=7.2 Score=39.27 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHh
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 368 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~ 368 (587)
+-|..|+.++.+|+..|=||+|+++||.+.+..
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 479999999999999999999999999887654
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.44 E-value=8.8 Score=44.39 Aligned_cols=38 Identities=24% Similarity=0.569 Sum_probs=27.1
Q ss_pred CCcccccccccccc--cccCCcchHHHHHHHHHhCCCCCCCCcC
Q 007840 337 ECAICREPMAKAKK--LLCNHLFHLACLRSWLDQGLNEMYSCPT 378 (587)
Q Consensus 337 ~C~IC~e~~~~~~~--lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~ 378 (587)
.|.+|-........ --|||.-|.+|+++|+.. ...||.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~----~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK----ASPCAK 820 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhc----CCCCcc
Confidence 46666655443322 259999999999999998 466665
No 126
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=51.29 E-value=5.5 Score=45.18 Aligned_cols=25 Identities=36% Similarity=0.858 Sum_probs=18.6
Q ss_pred ccccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 350 KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 350 ~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
...|+++||..|+.. + +..||.|-+
T Consensus 534 C~~C~avfH~~C~~r---~----s~~CPrC~R 558 (580)
T KOG1829|consen 534 CSTCLAVFHKKCLRR---K----SPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHHhc---c----CCCCCchHH
Confidence 458999999999643 2 345999944
No 127
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=50.61 E-value=9.8 Score=26.02 Aligned_cols=36 Identities=33% Similarity=0.811 Sum_probs=25.7
Q ss_pred CCcccccccccc-ccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 337 ECAICREPMAKA-KKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 337 ~C~IC~e~~~~~-~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.|..|.+.+... ..+ .=+..||..| ..|..|+.++.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C------------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC------------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC------------CCCcccCCcCc
Confidence 378888887664 222 3568899988 58888987763
No 128
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=47.98 E-value=11 Score=39.40 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=33.2
Q ss_pred CCCcccccccc---cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 336 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 336 ~~C~IC~e~~~---~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
-.||+-.|.-. .|..+.|||+.-.+-++..-+.+ .....||.|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG-~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNG-VLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcC-cEEeeCCCCCc
Confidence 36988666543 47889999999999998765554 33678999943
No 129
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.95 E-value=13 Score=41.20 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=30.8
Q ss_pred CCCCCccccccccc-ccccccCCcchHHHHHHHHHhC
Q 007840 334 YDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQG 369 (587)
Q Consensus 334 ~~~~C~IC~e~~~~-~~~lpC~H~Fh~~Cl~~wl~~~ 369 (587)
.+.+|-||.+.... ...+.|||.||..|....+.++
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 34589999999885 6678999999999999988775
No 130
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.90 E-value=11 Score=38.84 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=29.0
Q ss_pred CCCccccccccccccccc----CCcchHHHHHHHHHhC
Q 007840 336 DECAICREPMAKAKKLLC----NHLFHLACLRSWLDQG 369 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC----~H~Fh~~Cl~~wl~~~ 369 (587)
..|.+|.|.+++.....| .|-||..|-++-++++
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 369999999999877777 5999999999888764
No 131
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=47.87 E-value=1.6 Score=35.55 Aligned_cols=41 Identities=27% Similarity=0.676 Sum_probs=23.1
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..||.|..+++..- +|..|..|-...... ..||-|..++..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~~-----a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKKE-----AFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEEE-----EE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC----CEEECccccccceec-----ccCCCcccHHHH
Confidence 37999999876533 666777786654443 689999988753
No 132
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=45.63 E-value=31 Score=36.04 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=29.2
Q ss_pred cCCCCCcccccccccc--------------cccccCCcchHHHHHHHHHhC--CCCCCCCcCcCcc
Q 007840 333 AYDDECAICREPMAKA--------------KKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKP 382 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~--------------~~lpC~H~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~ 382 (587)
+..+.||+=+..+.-| +-|.|||+-- ...|=.+. ......||+||..
T Consensus 288 A~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G---~H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 288 AARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHG---YHNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred ccCCCCCcccceeecccccccccccccCCeEEEecccccc---ccccccccccCcccCcCCeeeee
Confidence 4456899887766422 3479998732 12565443 2235789999975
No 133
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.99 E-value=8.7 Score=41.33 Aligned_cols=31 Identities=26% Similarity=0.578 Sum_probs=0.0
Q ss_pred ccccCCcchHHHHHHHHHhCC--CCCCCCcCcCccc
Q 007840 350 KLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPL 383 (587)
Q Consensus 350 ~lpC~H~Fh~~Cl~~wl~~~~--~~~~~CP~CR~~l 383 (587)
-+.|||++-. ..|-.+.. .....||+||..-
T Consensus 306 Yl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 306 YLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ------------------------------------
T ss_pred eccccceeee---cccccccccccccccCCCccccC
Confidence 4799998643 36754321 1257899999863
No 134
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=41.58 E-value=13 Score=28.24 Aligned_cols=37 Identities=32% Similarity=0.849 Sum_probs=28.7
Q ss_pred Cccccccccccccc--ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 338 CAICREPMAKAKKL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 338 C~IC~e~~~~~~~l--pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
|+.|.+.+...... .-|..||..| ..|-.|++++...
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~C------------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPEC------------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTT------------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccc------------cccCCCCCccCCC
Confidence 67788887754443 7889999988 5899999988654
No 135
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=40.67 E-value=8.8 Score=39.95 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=19.6
Q ss_pred CCCCCcccccccccccccc-----cCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKAKKLL-----CNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lp-----C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
....||+|-..-.-.+... -.|.+|.-|-..|-.. ...||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~----R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV----RIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE------TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec----CCCCcCCCCC
Confidence 3468999987643221111 1355666788888766 5799999553
No 136
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.13 E-value=20 Score=28.86 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=9.2
Q ss_pred chHHHHHHHHHh
Q 007840 357 FHLACLRSWLDQ 368 (587)
Q Consensus 357 Fh~~Cl~~wl~~ 368 (587)
||+.||..|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 137
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.03 E-value=20 Score=23.50 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=12.5
Q ss_pred CCccccccccccc-ccc-cCCcc
Q 007840 337 ECAICREPMAKAK-KLL-CNHLF 357 (587)
Q Consensus 337 ~C~IC~e~~~~~~-~lp-C~H~F 357 (587)
.||-|........ .-| |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 5777777664432 234 77776
No 138
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.51 E-value=32 Score=35.96 Aligned_cols=51 Identities=24% Similarity=0.479 Sum_probs=34.6
Q ss_pred CCCCccccccccc-----------------c--cccccCCcchHHHHHHHHHhCCCC-----CCCCcCcCccccc
Q 007840 335 DDECAICREPMAK-----------------A--KKLLCNHLFHLACLRSWLDQGLNE-----MYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~-----------------~--~~lpC~H~Fh~~Cl~~wl~~~~~~-----~~~CP~CR~~l~~ 385 (587)
+..||+|+..-.- + ..-||||+--..-..-|-+...+. +..||.|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4689999975320 1 124999987777777787664332 4679999877643
No 139
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=35.49 E-value=11 Score=35.20 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 357 FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 357 Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
||..||++-|..-..+.-.||.|+..-..
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 79999999888766567899999876443
No 140
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.72 E-value=29 Score=35.25 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCCCcccccccccc----cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~----~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.-.|+|---+|... ...+|||+|-..-+.+.- ...|++|.+.....
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik------as~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK------ASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh------hccccccCCccccc
Confidence 34699887777653 345999999988887654 36999999987654
No 141
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=34.70 E-value=1.9e+02 Score=33.28 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=24.1
Q ss_pred HHcccCcHHHHHHHHHHHHHHHHHHhhhccc
Q 007840 82 IFFGELYPAETRKFVERLINYVIYKGTFLPL 112 (587)
Q Consensus 82 lfFG~LR~~E~e~L~er~~~~~~~k~~fl~~ 112 (587)
=||--|-.+|.||+-+ +|||++|...|+.+
T Consensus 169 gff~l~~~i~~~~~~~-i~nyil~~~a~i~g 198 (952)
T TIGR02921 169 GFFELLEEIEFEHLGD-IFNYILFHTAFICG 198 (952)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHH
Confidence 3688888899999955 57999998777665
No 142
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=21 Score=36.99 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=36.0
Q ss_pred CCCCccccccccc------ccccc--------cCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 335 DDECAICREPMAK------AKKLL--------CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 335 ~~~C~IC~e~~~~------~~~lp--------C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
+..|.||...+.. +..+. |||..|..|+..-+.+. ...||.||...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~---~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA---GIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh---hhcCCccccee
Confidence 3479999988762 34455 99999999999988774 36899998753
No 143
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=32.12 E-value=23 Score=36.25 Aligned_cols=48 Identities=31% Similarity=0.598 Sum_probs=34.3
Q ss_pred CCCccccccccccc-------ccccCCcchHHHHHHHHHhC-----CCCCCCCcCcCccc
Q 007840 336 DECAICREPMAKAK-------KLLCNHLFHLACLRSWLDQG-----LNEMYSCPTCRKPL 383 (587)
Q Consensus 336 ~~C~IC~e~~~~~~-------~lpC~H~Fh~~Cl~~wl~~~-----~~~~~~CP~CR~~l 383 (587)
..|-+|.+++.+.. .-.|+-++|..|+..-+... .+....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 47999999984321 22589999999998844332 23457899999864
No 144
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=30.19 E-value=2.8e+02 Score=22.01 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=14.2
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007840 245 SLLEWKGILIRNFGFFLDMATLLMALGHYIHIW 277 (587)
Q Consensus 245 ~~we~kg~~i~y~~f~~dl~~~~~~l~~~l~~~ 277 (587)
+.|++-|... .+-+.++..-++++..|+.++
T Consensus 6 slf~kigqlf--vdafteflvsivdiiiflail 36 (73)
T PF07069_consen 6 SLFNKIGQLF--VDAFTEFLVSIVDIIIFLAIL 36 (73)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3566556542 233333333344555555544
No 145
>PLN02189 cellulose synthase
Probab=29.30 E-value=53 Score=39.97 Aligned_cols=47 Identities=17% Similarity=0.511 Sum_probs=32.0
Q ss_pred CCCCcccccccccc---c-cc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKA---K-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~---~-~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|.||-|+.... . .. .|+---|+.|.. .-.+. +++.||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~e--g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERRE--GTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhc--CCccCcccCCchh
Confidence 45899999986521 1 12 477668999984 33322 2689999998765
No 146
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=29.17 E-value=1.1e+02 Score=31.55 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.5
Q ss_pred chHHHHHHHHHhCCCCCCCCc
Q 007840 357 FHLACLRSWLDQGLNEMYSCP 377 (587)
Q Consensus 357 Fh~~Cl~~wl~~~~~~~~~CP 377 (587)
=|++|..+|=.-. ++.||
T Consensus 57 GHrdCFEK~HlIa---nQ~~p 74 (285)
T PF06937_consen 57 GHRDCFEKYHLIA---NQDCP 74 (285)
T ss_pred chHHHHHHHHHHH---cCCCC
Confidence 3689999996543 57898
No 147
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=28.42 E-value=7.9e+02 Score=26.62 Aligned_cols=83 Identities=14% Similarity=0.364 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHhh-h-----cc---cccccc-chhhh-HHHHHHH
Q 007840 61 VALLANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGT-F-----LP---LVIPPT-VFQAG-LWSVWLT 129 (587)
Q Consensus 61 ~~vl~N~~~~~~~l~~~~lq~lfFG~LR~~E~e~L~er~~~~~~~k~~-f-----l~---~vi~~~-~~~~~-~w~~~F~ 129 (587)
+..+.|++...++.+|.+ .+++...+-.|.-+ .|-+ .|.++-.. + ++ .+++++ ++++. .+++=|.
T Consensus 116 i~k~i~l~~~~~i~IG~l--~~~~~~~~~k~~~~-~~Yl-~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~LAPf~ 191 (367)
T PF09971_consen 116 ISKYIHLFIQFFIIIGFL--ALILKRIYKKIKFN-IEYL-AFSLVSLIILIASIVLPFFASVMNPTRLYQITLIFLAPFF 191 (367)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhh-HHHH-HHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHHHHHHH
Confidence 556777777777776653 23333333332211 1211 12222211 1 11 133333 34433 4588999
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 007840 130 VLCSLKMFQALARDRLER 147 (587)
Q Consensus 130 ~L~~LK~fh~L~~dR~e~ 147 (587)
+.++.+++.++-+-+-..
T Consensus 192 iiG~~~~~~~i~k~~~~~ 209 (367)
T PF09971_consen 192 IIGGITLFKLINKLFRRI 209 (367)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999996655443
No 148
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=28.03 E-value=20 Score=38.75 Aligned_cols=51 Identities=24% Similarity=0.482 Sum_probs=0.0
Q ss_pred CCCCccccccccc-----------------c--cccccCCcchHHHHHHHHHhCCCC-----CCCCcCcCccccc
Q 007840 335 DDECAICREPMAK-----------------A--KKLLCNHLFHLACLRSWLDQGLNE-----MYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~-----------------~--~~lpC~H~Fh~~Cl~~wl~~~~~~-----~~~CP~CR~~l~~ 385 (587)
..+|++|+..-.- + ..-||||+--....+-|-+-..+. +..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 5589999976321 1 124999998888888897765332 3589999888753
No 149
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.09 E-value=33 Score=33.83 Aligned_cols=38 Identities=32% Similarity=0.801 Sum_probs=26.1
Q ss_pred CCCCcccccc-----cccc---cccccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 335 DDECAICREP-----MAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 335 ~~~C~IC~e~-----~~~~---~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
+..|-+|.++ |+.. +.-.|+-+||..|..+ ..||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 4579999864 2221 2237999999999742 47999954
No 150
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.30 E-value=71 Score=28.16 Aligned_cols=47 Identities=28% Similarity=0.637 Sum_probs=30.2
Q ss_pred CCCCcccccccccc--------ccccc---CCcchHHHHHHHHHhC-----CCCCCCCcCcCc
Q 007840 335 DDECAICREPMAKA--------KKLLC---NHLFHLACLRSWLDQG-----LNEMYSCPTCRK 381 (587)
Q Consensus 335 ~~~C~IC~e~~~~~--------~~lpC---~H~Fh~~Cl~~wl~~~-----~~~~~~CP~CR~ 381 (587)
+..|--|+..-.+. +.-.| .=.||..||..+.... ......||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 44677777644322 12345 6679999998877542 123578999997
No 151
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=26 Score=36.51 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=39.3
Q ss_pred CCCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.++.|-||...+..+.+. -|.|-|+..|...|... ...||.||....
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~----~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM----GNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhh----hhccchhhcCcC
Confidence 457899999998877665 49999999999999988 588999988653
No 152
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=24.43 E-value=87 Score=39.82 Aligned_cols=49 Identities=37% Similarity=0.691 Sum_probs=40.1
Q ss_pred CCCCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
+..|.+|+....+-..+ -|.-.||..|++.-+.....+...||-||..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45799999988775544 46678999999999988777788999999875
No 153
>PRK12495 hypothetical protein; Provisional
Probab=23.96 E-value=7.5e+02 Score=24.88 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=9.6
Q ss_pred CCCCcCcCccccc
Q 007840 373 MYSCPTCRKPLFV 385 (587)
Q Consensus 373 ~~~CP~CR~~l~~ 385 (587)
...||.|...+..
T Consensus 58 ~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 58 QEFCPTCQQPVTE 70 (226)
T ss_pred eeECCCCCCcccc
Confidence 4679999876654
No 154
>PLN02436 cellulose synthase A
Probab=23.82 E-value=76 Score=38.82 Aligned_cols=47 Identities=17% Similarity=0.478 Sum_probs=31.8
Q ss_pred CCCCccccccccc---cc----ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAK---AK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~---~~----~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|-||-|+... +. .-.|+---|+.|.. .-.+. +++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~e--g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERRE--GNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhc--CCccCcccCCchh
Confidence 3489999998642 21 12477668999984 33322 2689999998765
No 155
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.67 E-value=39 Score=35.57 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=27.4
Q ss_pred CCCCccccccccccccc----ccC--CcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 335 DDECAICREPMAKAKKL----LCN--HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l----pC~--H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
...||+|-..-...... .=| |..|.-|-..|-.. ...||.|-.+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV----RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc----CccCCCCCCC
Confidence 45899998764322110 112 44555687888766 5899999653
No 156
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=22.47 E-value=1.3e+02 Score=25.06 Aligned_cols=47 Identities=19% Similarity=0.445 Sum_probs=19.8
Q ss_pred CCCCccccccccc---cc----ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAK---AK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~---~~----~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|-||-++... +. .-.|+---|+.|..-=.+.+ ++.||.|+....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg---~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG---NQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS----SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC---cccccccCCCcc
Confidence 4589999998642 11 12677778999986544443 689999997654
No 157
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=22.45 E-value=87 Score=33.11 Aligned_cols=56 Identities=20% Similarity=0.450 Sum_probs=34.4
Q ss_pred hCCCCChhhhhc----CCCCCcccccccccccc---cccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 322 ALPDATSEELRA----YDDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 322 ~~p~~~~~~l~~----~~~~C~IC~e~~~~~~~---lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
-+|-...+|++. .+..|-.|.++...... -.|.|.||.+|-.--=++ -..||.|..
T Consensus 313 L~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHes----Lh~CpgCeh 375 (378)
T KOG2807|consen 313 LFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHES----LHNCPGCEH 375 (378)
T ss_pred hcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhh----hhcCCCcCC
Confidence 355555444442 23459999776655322 369999999995433233 357999963
No 158
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=22.34 E-value=45 Score=35.16 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=27.5
Q ss_pred CCCCCccccccccccc-cc--cc--CCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 334 YDDECAICREPMAKAK-KL--LC--NHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~l--pC--~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
....||+|-..-...+ .+ .= .|..|.-|-..|-.. ...||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV----RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc----CccCCCCCC
Confidence 4568999987642221 11 11 244555677788766 589999965
No 159
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=21.40 E-value=30 Score=27.55 Aligned_cols=30 Identities=17% Similarity=0.523 Sum_probs=15.5
Q ss_pred CCCCcccccccccccc----cccCCcchHHHHHH
Q 007840 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~ 364 (587)
...|.+|...|.-..+ -.||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 3589999999964322 37999999888643
No 160
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.04 E-value=1.2e+02 Score=27.24 Aligned_cols=41 Identities=24% Similarity=0.604 Sum_probs=30.7
Q ss_pred CCCccccccccccc--------------ccccCCcchHHHHHHHHHhCCCCCCCCcCcC
Q 007840 336 DECAICREPMAKAK--------------KLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (587)
Q Consensus 336 ~~C~IC~e~~~~~~--------------~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (587)
..|--|...|.++. --.|++.||.+|-.-+-+. -..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~----Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES----LHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh----ccCCcCCC
Confidence 46999999886531 2479999999996665555 46799996
No 161
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.65 E-value=69 Score=24.87 Aligned_cols=28 Identities=18% Similarity=0.539 Sum_probs=21.2
Q ss_pred CCCCcccccccc--cc-cc-cccCCcchHHHH
Q 007840 335 DDECAICREPMA--KA-KK-LLCNHLFHLACL 362 (587)
Q Consensus 335 ~~~C~IC~e~~~--~~-~~-lpC~H~Fh~~Cl 362 (587)
+..|++|-+++. +. +. -.||=.+|++|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 457999999994 32 22 369999999993
No 162
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=20.05 E-value=9.7e+02 Score=27.91 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=4.4
Q ss_pred CCCcCcCcc
Q 007840 374 YSCPTCRKP 382 (587)
Q Consensus 374 ~~CP~CR~~ 382 (587)
..|-.|...
T Consensus 204 frC~~C~~K 212 (678)
T KOG0193|consen 204 FRCQTCGYK 212 (678)
T ss_pred cccCCCCCc
Confidence 455555443
Done!