Query 007840
Match_columns 587
No_of_seqs 524 out of 2250
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ejs_A Autocrine motility fact 99.6 1.1E-15 3.7E-20 117.0 4.5 48 539-586 4-51 (58)
2 2ekf_A Ancient ubiquitous prot 99.6 1.3E-15 4.5E-20 117.4 4.7 48 539-586 4-51 (61)
3 4g3o_A E3 ubiquitin-protein li 99.4 4.8E-14 1.7E-18 107.2 4.6 42 545-586 14-55 (58)
4 2kiz_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 99.3 5.0 50 333-386 12-64 (69)
5 1x4j_A Ring finger protein 38; 99.2 4E-12 1.4E-16 103.6 2.4 49 333-385 21-72 (75)
6 1iym_A EL5; ring-H2 finger, ub 99.2 4.8E-12 1.7E-16 96.6 2.7 47 334-384 4-54 (55)
7 2ect_A Ring finger protein 126 99.2 9.4E-12 3.2E-16 102.1 4.3 51 333-387 13-66 (78)
8 2l0b_A E3 ubiquitin-protein li 99.2 5.9E-12 2E-16 106.8 2.9 48 334-385 39-89 (91)
9 2ep4_A Ring finger protein 24; 99.2 1.6E-11 5.4E-16 99.7 5.1 49 334-386 14-65 (74)
10 3ng2_A RNF4, snurf, ring finge 99.2 1E-11 3.5E-16 99.7 3.9 49 334-386 9-64 (71)
11 2ecm_A Ring finger and CHY zin 99.2 1.1E-11 3.9E-16 94.4 3.7 47 334-384 4-54 (55)
12 2ecl_A Ring-box protein 2; RNF 99.2 7.5E-12 2.6E-16 103.9 2.8 48 334-385 14-76 (81)
13 2djb_A Polycomb group ring fin 99.2 2E-11 6.8E-16 98.7 5.2 51 334-388 14-65 (72)
14 2ea6_A Ring finger protein 4; 99.2 1.3E-11 4.3E-16 98.4 3.8 49 333-385 13-68 (69)
15 1chc_A Equine herpes virus-1 r 99.1 2E-11 7E-16 97.3 4.2 48 334-385 4-52 (68)
16 2xeu_A Ring finger protein 4; 99.1 1.7E-11 6E-16 96.1 3.6 48 335-386 3-57 (64)
17 2d8t_A Dactylidin, ring finger 99.1 9.2E-12 3.2E-16 100.4 1.6 48 334-385 14-61 (71)
18 4ayc_A E3 ubiquitin-protein li 99.1 2.7E-11 9.2E-16 110.7 4.5 47 335-385 53-99 (138)
19 1v87_A Deltex protein 2; ring- 99.1 2.9E-11 9.8E-16 106.5 4.0 52 335-386 25-95 (114)
20 2ecy_A TNF receptor-associated 99.1 3.8E-11 1.3E-15 95.3 3.9 50 334-386 14-63 (66)
21 2csy_A Zinc finger protein 183 99.1 6.1E-11 2.1E-15 98.0 4.2 47 334-384 14-60 (81)
22 3dpl_R Ring-box protein 1; ubi 99.1 5.4E-11 1.8E-15 103.8 4.0 47 334-384 36-100 (106)
23 2yur_A Retinoblastoma-binding 99.1 7.6E-11 2.6E-15 95.9 4.6 50 334-385 14-64 (74)
24 2ysl_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 96.1 3.6 52 334-386 19-70 (73)
25 1t1h_A Gspef-atpub14, armadill 99.1 7.8E-11 2.7E-15 96.5 4.3 50 334-386 7-56 (78)
26 2ecn_A Ring finger protein 141 99.0 3.5E-11 1.2E-15 96.5 1.1 48 334-386 14-61 (70)
27 2ct2_A Tripartite motif protei 99.0 1.4E-10 4.9E-15 96.9 4.8 53 333-386 13-69 (88)
28 3fl2_A E3 ubiquitin-protein li 99.0 1.8E-10 6.3E-15 103.0 5.5 49 334-385 51-99 (124)
29 3lrq_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 99.9 3.7 48 335-385 22-70 (100)
30 1g25_A CDK-activating kinase a 99.0 2.4E-10 8.3E-15 90.3 4.2 49 335-386 3-56 (65)
31 2ysj_A Tripartite motif-contai 99.0 2.5E-10 8.4E-15 89.6 4.1 46 333-379 18-63 (63)
32 2ecw_A Tripartite motif-contai 99.0 3.6E-10 1.2E-14 93.5 5.0 53 334-386 18-72 (85)
33 2ecv_A Tripartite motif-contai 99.0 3.9E-10 1.3E-14 93.3 5.0 53 334-386 18-72 (85)
34 3ztg_A E3 ubiquitin-protein li 99.0 2.9E-10 9.8E-15 96.1 3.9 49 334-384 12-61 (92)
35 2y43_A E3 ubiquitin-protein li 99.0 2.1E-10 7.1E-15 98.5 2.8 48 334-385 21-69 (99)
36 2ckl_A Polycomb group ring fin 98.9 3.5E-10 1.2E-14 98.7 4.0 49 334-386 14-63 (108)
37 2egp_A Tripartite motif-contai 98.9 1.3E-10 4.6E-15 95.1 1.0 53 334-386 11-66 (79)
38 2ecj_A Tripartite motif-contai 98.9 4.6E-10 1.6E-14 86.3 3.1 45 334-379 14-58 (58)
39 4a0k_B E3 ubiquitin-protein li 98.9 1.5E-10 5E-15 102.7 0.2 48 334-385 47-112 (117)
40 1jm7_A BRCA1, breast cancer ty 98.9 1E-09 3.5E-14 96.0 4.7 50 336-386 22-71 (112)
41 1z6u_A NP95-like ring finger p 98.9 8.3E-10 2.8E-14 102.3 4.2 49 335-386 78-126 (150)
42 3l11_A E3 ubiquitin-protein li 98.9 1.9E-10 6.5E-15 101.5 -0.6 48 335-385 15-62 (115)
43 4ap4_A E3 ubiquitin ligase RNF 98.9 8.1E-10 2.8E-14 99.1 3.3 50 334-387 6-62 (133)
44 1rmd_A RAG1; V(D)J recombinati 98.9 7.5E-10 2.6E-14 97.8 3.0 50 334-386 22-71 (116)
45 2ckl_B Ubiquitin ligase protei 98.8 1.1E-09 3.7E-14 102.9 3.9 47 336-385 55-102 (165)
46 2d8s_A Cellular modulator of i 98.8 1.6E-09 5.6E-14 89.6 4.3 51 334-386 14-71 (80)
47 2kr4_A Ubiquitin conjugation f 98.8 1.9E-09 6.6E-14 90.1 4.2 48 334-385 13-60 (85)
48 3hct_A TNF receptor-associated 98.8 1.3E-09 4.5E-14 96.7 3.1 48 335-385 18-65 (118)
49 1e4u_A Transcriptional repress 98.8 3.9E-09 1.3E-13 86.9 5.5 50 334-386 10-63 (78)
50 2c2l_A CHIP, carboxy terminus 98.8 6.6E-09 2.2E-13 104.9 7.6 49 334-385 207-255 (281)
51 2kre_A Ubiquitin conjugation f 98.8 2.2E-09 7.4E-14 92.7 3.3 47 335-385 29-75 (100)
52 4ap4_A E3 ubiquitin ligase RNF 98.8 2.1E-09 7.3E-14 96.3 3.2 50 333-386 70-126 (133)
53 2ct0_A Non-SMC element 1 homol 98.8 4.3E-09 1.5E-13 85.5 4.1 54 333-388 13-67 (74)
54 1wgm_A Ubiquitin conjugation f 98.8 3.6E-09 1.2E-13 90.9 3.7 48 334-385 21-69 (98)
55 2vje_B MDM4 protein; proto-onc 98.7 3.6E-09 1.2E-13 83.3 3.1 48 333-384 5-55 (63)
56 1bor_A Transcription factor PM 98.7 2E-09 6.9E-14 82.7 1.5 46 334-386 5-50 (56)
57 2y1n_A E3 ubiquitin-protein li 98.7 4.6E-09 1.6E-13 110.8 4.6 48 336-386 333-380 (389)
58 2vje_A E3 ubiquitin-protein li 98.7 4E-09 1.4E-13 83.4 3.1 47 334-384 7-56 (64)
59 3knv_A TNF receptor-associated 98.7 2.8E-09 9.5E-14 97.7 0.8 49 334-385 30-78 (141)
60 1jm7_B BARD1, BRCA1-associated 98.6 7.7E-09 2.6E-13 91.5 1.7 45 335-385 22-67 (117)
61 2f42_A STIP1 homology and U-bo 98.6 1.8E-08 6.2E-13 95.7 4.1 48 335-385 106-153 (179)
62 4ic3_A E3 ubiquitin-protein li 98.6 8.6E-09 2.9E-13 83.8 0.8 43 335-385 24-67 (74)
63 2yu4_A E3 SUMO-protein ligase 98.5 2.8E-08 9.7E-13 84.5 3.3 51 335-385 7-63 (94)
64 3hcs_A TNF receptor-associated 98.5 3.7E-08 1.3E-12 92.7 3.1 49 335-386 18-66 (170)
65 2ecg_A Baculoviral IAP repeat- 98.5 7.9E-08 2.7E-12 78.1 3.9 43 335-385 25-68 (75)
66 2ea5_A Cell growth regulator w 98.4 9E-08 3.1E-12 76.5 3.4 45 333-385 13-58 (68)
67 3htk_C E3 SUMO-protein ligase 98.3 3.3E-07 1.1E-11 91.3 4.3 50 335-386 181-233 (267)
68 2yho_A E3 ubiquitin-protein li 98.3 1.4E-07 4.8E-12 77.7 1.1 43 335-385 18-61 (79)
69 3k1l_B Fancl; UBC, ring, RWD, 98.3 3.3E-07 1.1E-11 94.1 3.4 52 334-385 307-373 (381)
70 2bay_A PRE-mRNA splicing facto 98.2 4.4E-07 1.5E-11 70.9 2.9 48 336-387 4-52 (61)
71 1vyx_A ORF K3, K3RING; zinc-bi 98.2 8.9E-07 3E-11 68.9 3.5 49 334-384 5-58 (60)
72 3t6p_A Baculoviral IAP repeat- 98.1 5.1E-07 1.7E-11 94.4 0.5 44 334-385 294-338 (345)
73 1wim_A KIAA0161 protein; ring 98.1 1.8E-06 6.3E-11 73.0 3.4 48 335-382 5-61 (94)
74 3vk6_A E3 ubiquitin-protein li 97.7 2E-05 6.7E-10 66.8 3.7 46 337-385 3-49 (101)
75 3nw0_A Non-structural maintena 97.3 0.00013 4.6E-09 72.2 4.3 52 335-388 180-232 (238)
76 2dhy_A CUE domain-containing p 97.0 0.00073 2.5E-08 53.4 4.6 41 547-587 17-58 (67)
77 2qho_B E3 ubiquitin-protein li 95.4 0.017 5.8E-07 41.9 4.3 38 549-586 10-48 (53)
78 2di0_A Activating signal coint 95.3 0.027 9.2E-07 44.7 5.4 42 545-586 10-52 (71)
79 2ko5_A Ring finger protein Z; 92.3 0.055 1.9E-06 45.0 2.0 45 336-386 29-74 (99)
80 2lri_C Autoimmune regulator; Z 92.1 0.066 2.2E-06 42.0 2.3 49 334-382 11-59 (66)
81 2jun_A Midline-1; B-BOX, TRIM, 92.0 0.071 2.4E-06 44.9 2.5 31 335-365 3-36 (101)
82 1wgl_A TOLL-interacting protei 91.8 0.17 6E-06 38.7 4.2 39 549-587 10-49 (59)
83 1wil_A KIAA1045 protein; ring 91.1 0.12 4.1E-06 42.2 2.7 47 333-380 13-74 (89)
84 1p3q_Q VPS9P, vacuolar protein 90.0 0.24 8.4E-06 37.1 3.4 42 546-587 10-52 (54)
85 3m62_A Ubiquitin conjugation f 85.5 1.5 5E-05 51.1 8.0 47 336-386 892-939 (968)
86 2l5u_A Chromodomain-helicase-D 85.0 0.29 9.9E-06 37.6 1.3 49 334-382 10-58 (61)
87 1mm2_A MI2-beta; PHD, zinc fin 84.5 0.18 6.2E-06 38.8 -0.1 51 333-383 7-57 (61)
88 1f62_A Transcription factor WS 84.2 0.35 1.2E-05 35.5 1.3 45 337-381 2-49 (51)
89 1otr_A Protein CUE2; protein-p 83.3 0.76 2.6E-05 33.8 2.8 38 550-587 6-44 (49)
90 3u5n_A E3 ubiquitin-protein li 83.0 0.18 6.1E-06 48.5 -0.9 51 333-383 5-55 (207)
91 3o36_A Transcription intermedi 82.3 0.47 1.6E-05 44.6 1.8 50 334-383 3-52 (184)
92 2k16_A Transcription initiatio 80.2 0.22 7.7E-06 39.7 -1.1 51 335-385 18-71 (75)
93 1fp0_A KAP-1 corepressor; PHD 79.4 0.55 1.9E-05 38.9 1.0 50 333-382 23-72 (88)
94 2ro1_A Transcription intermedi 77.5 0.48 1.7E-05 44.8 0.1 48 335-382 2-49 (189)
95 2cs3_A Protein C14ORF4, MY039 76.0 1.9 6.4E-05 34.8 3.1 45 335-379 15-64 (93)
96 2yql_A PHD finger protein 21A; 75.7 0.2 6.8E-06 37.8 -2.5 48 334-381 8-55 (56)
97 2puy_A PHD finger protein 21A; 75.2 0.21 7.3E-06 38.1 -2.5 50 334-383 4-53 (60)
98 1xwh_A Autoimmune regulator; P 72.4 0.43 1.5E-05 37.2 -1.4 49 334-382 7-55 (66)
99 2lbm_A Transcriptional regulat 71.5 2.6 8.8E-05 38.0 3.3 49 333-381 61-116 (142)
100 2ysm_A Myeloid/lymphoid or mix 69.7 0.85 2.9E-05 39.1 -0.3 47 334-380 6-55 (111)
101 2e6r_A Jumonji/ARID domain-con 68.1 0.43 1.5E-05 39.8 -2.4 49 334-382 15-66 (92)
102 1wev_A Riken cDNA 1110020M19; 67.4 0.55 1.9E-05 38.8 -1.9 52 334-385 15-75 (88)
103 2g45_A Ubiquitin carboxyl-term 67.0 0.31 1E-05 43.4 -3.8 85 359-451 1-105 (129)
104 3ihp_A Ubiquitin carboxyl-term 65.7 0.38 1.3E-05 55.9 -4.4 93 351-451 174-286 (854)
105 2i50_A Ubiquitin carboxyl-term 64.6 0.34 1.2E-05 42.9 -4.0 92 350-452 4-107 (126)
106 3v43_A Histone acetyltransfera 63.7 1.3 4.6E-05 38.1 -0.3 45 337-381 63-111 (112)
107 3asl_A E3 ubiquitin-protein li 63.6 1.3 4.6E-05 34.8 -0.2 45 337-381 20-68 (70)
108 3shb_A E3 ubiquitin-protein li 63.1 1 3.6E-05 36.2 -1.0 45 337-381 28-76 (77)
109 2e6s_A E3 ubiquitin-protein li 63.0 1.3 4.5E-05 35.6 -0.4 46 336-381 27-76 (77)
110 3ask_A E3 ubiquitin-protein li 62.0 1.4 4.7E-05 42.9 -0.5 45 337-381 176-224 (226)
111 3ql9_A Transcriptional regulat 58.8 7.5 0.00026 34.4 3.7 50 333-382 55-111 (129)
112 1wen_A Inhibitor of growth fam 56.6 4.6 0.00016 31.8 1.8 45 335-383 16-66 (71)
113 2yt5_A Metal-response element- 55.5 0.9 3.1E-05 35.1 -2.5 50 334-383 5-62 (66)
114 1weu_A Inhibitor of growth fam 51.4 5.9 0.0002 32.8 1.7 43 336-382 37-85 (91)
115 2vpb_A Hpygo1, pygopus homolog 51.0 5.2 0.00018 30.9 1.2 46 335-380 8-64 (65)
116 4gne_A Histone-lysine N-methyl 48.9 6.2 0.00021 33.7 1.5 52 333-386 13-66 (107)
117 1zbd_B Rabphilin-3A; G protein 47.9 9.1 0.00031 34.0 2.5 28 334-361 54-86 (134)
118 1weo_A Cellulose synthase, cat 47.6 44 0.0015 27.5 6.2 48 335-385 16-70 (93)
119 3lqh_A Histone-lysine N-methyl 47.5 4.6 0.00016 37.9 0.5 49 335-383 2-64 (183)
120 3i2d_A E3 SUMO-protein ligase 47.0 14 0.00049 38.3 4.1 50 335-386 249-301 (371)
121 1we9_A PHD finger family prote 46.6 1.7 6E-05 33.2 -2.2 49 334-382 5-58 (64)
122 1joc_A EEA1, early endosomal a 45.5 19 0.00066 31.4 4.2 27 336-362 70-100 (125)
123 2ysm_A Myeloid/lymphoid or mix 44.7 2.3 7.7E-05 36.4 -2.0 46 337-382 56-104 (111)
124 1x62_A C-terminal LIM domain p 44.4 10 0.00035 29.8 2.1 38 335-384 15-52 (79)
125 2d8z_A Four and A half LIM dom 44.3 13 0.00044 28.3 2.6 39 335-385 5-43 (70)
126 2l43_A N-teminal domain from h 43.9 5.6 0.00019 32.7 0.4 49 333-383 23-76 (88)
127 4fo9_A E3 SUMO-protein ligase 43.6 17 0.00059 37.5 4.1 49 336-386 216-267 (360)
128 3v43_A Histone acetyltransfera 43.5 19 0.00063 30.7 3.7 43 335-380 5-62 (112)
129 2dar_A PDZ and LIM domain prot 43.4 9.9 0.00034 30.7 1.9 39 335-385 25-63 (90)
130 1wyh_A SLIM 2, skeletal muscle 42.5 14 0.00049 28.1 2.6 39 335-385 5-45 (72)
131 2d8x_A Protein pinch; LIM doma 41.2 13 0.00044 28.3 2.1 40 335-386 5-44 (70)
132 1nyp_A Pinch protein; LIM doma 41.0 12 0.0004 28.2 1.8 39 335-385 5-43 (66)
133 2vnf_A ING 4, P29ING4, inhibit 40.8 3.3 0.00011 31.4 -1.4 42 336-381 11-58 (60)
134 1x64_A Alpha-actinin-2 associa 40.6 16 0.00056 29.3 2.8 39 335-385 25-63 (89)
135 2cu8_A Cysteine-rich protein 2 40.1 12 0.00041 29.0 1.8 39 335-385 9-48 (76)
136 1x6a_A LIMK-2, LIM domain kina 39.8 18 0.00062 28.3 2.9 39 335-385 15-53 (81)
137 1wig_A KIAA1808 protein; LIM d 39.5 17 0.0006 28.0 2.7 38 335-384 5-42 (73)
138 2cur_A Skeletal muscle LIM-pro 39.1 14 0.00049 28.0 2.1 39 335-385 5-43 (69)
139 2kwj_A Zinc finger protein DPF 39.1 7.6 0.00026 33.3 0.5 42 336-380 2-59 (114)
140 2ku3_A Bromodomain-containing 38.3 8.5 0.00029 30.3 0.6 47 334-382 15-66 (71)
141 2kwj_A Zinc finger protein DPF 38.2 1.9 6.5E-05 37.2 -3.5 47 337-383 60-109 (114)
142 2gmg_A Hypothetical protein PF 38.1 16 0.00053 31.1 2.2 28 347-383 67-94 (105)
143 2cor_A Pinch protein; LIM doma 38.0 17 0.00059 28.5 2.5 39 335-385 15-53 (79)
144 1x68_A FHL5 protein; four-and- 37.8 18 0.00062 28.0 2.5 38 335-384 5-46 (76)
145 1x4l_A Skeletal muscle LIM-pro 37.6 15 0.00052 28.1 2.0 38 335-384 5-46 (72)
146 2jmi_A Protein YNG1, ING1 homo 37.0 5.4 0.00018 33.0 -0.8 44 334-381 25-75 (90)
147 1v6g_A Actin binding LIM prote 36.0 18 0.00061 28.4 2.2 39 335-385 15-53 (81)
148 2lv9_A Histone-lysine N-methyl 33.7 6.5 0.00022 32.9 -0.8 43 337-381 30-75 (98)
149 1iml_A CRIP, cysteine rich int 33.3 17 0.00057 28.2 1.6 38 337-386 2-40 (76)
150 1vfy_A Phosphatidylinositol-3- 32.7 18 0.00062 28.3 1.8 28 335-362 11-42 (73)
151 2cuq_A Four and A half LIM dom 32.4 24 0.00082 27.4 2.5 38 335-384 15-52 (80)
152 1x4k_A Skeletal muscle LIM-pro 32.1 21 0.0007 27.2 2.0 40 335-386 5-46 (72)
153 2dlo_A Thyroid receptor-intera 32.1 21 0.00072 28.0 2.0 40 334-385 14-53 (81)
154 2xb1_A Pygopus homolog 2, B-ce 32.0 11 0.00036 32.0 0.3 48 336-383 4-62 (105)
155 1x63_A Skeletal muscle LIM-pro 31.5 27 0.00091 27.3 2.6 40 335-386 15-56 (82)
156 2yw8_A RUN and FYVE domain-con 31.2 17 0.00057 29.2 1.3 28 336-363 20-51 (82)
157 2co8_A NEDD9 interacting prote 31.0 31 0.0011 27.2 2.9 41 334-386 14-55 (82)
158 2ri7_A Nucleosome-remodeling f 31.0 9.7 0.00033 34.9 -0.2 47 335-382 8-59 (174)
159 1x61_A Thyroid receptor intera 30.6 26 0.00089 26.6 2.3 38 335-384 5-44 (72)
160 1x3h_A Leupaxin; paxillin fami 30.6 22 0.00076 27.7 1.9 39 335-385 15-53 (80)
161 1vg5_A RSGI RUH-014, rhomboid 29.9 1.2E+02 0.0042 23.7 6.2 39 546-586 27-66 (73)
162 1y02_A CARP2, FYVE-ring finger 29.7 6.5 0.00022 34.3 -1.5 43 336-382 20-66 (120)
163 3fyb_A Protein of unknown func 29.6 20 0.00069 30.0 1.5 12 357-368 42-53 (104)
164 2o35_A Hypothetical protein DU 29.5 20 0.00069 30.0 1.5 12 357-368 43-54 (105)
165 1g47_A Pinch protein; LIM doma 28.3 25 0.00085 27.1 1.8 40 335-386 11-52 (77)
166 3c5k_A HD6, histone deacetylas 27.6 4.8 0.00016 34.5 -2.7 42 406-452 42-85 (109)
167 2l4z_A DNA endonuclease RBBP8, 27.2 20 0.00069 31.0 1.2 37 336-384 62-99 (123)
168 3t7l_A Zinc finger FYVE domain 26.7 26 0.00089 28.6 1.7 30 335-364 20-53 (90)
169 2kgg_A Histone demethylase jar 26.7 7.2 0.00025 28.5 -1.5 44 337-380 4-52 (52)
170 1z2q_A LM5-1; membrane protein 26.6 25 0.00085 28.3 1.6 29 335-363 21-53 (84)
171 1dvp_A HRS, hepatocyte growth 26.6 20 0.00067 34.3 1.1 28 335-362 161-192 (220)
172 2zet_C Melanophilin; complex, 26.0 1.2E+02 0.0042 27.3 6.3 46 334-382 67-117 (153)
173 2l3k_A Rhombotin-2, linker, LI 26.0 31 0.001 29.5 2.2 38 336-385 9-48 (123)
174 2egq_A FHL1 protein; LIM domai 25.5 29 0.00098 26.8 1.7 39 335-385 15-58 (77)
175 1wfk_A Zinc finger, FYVE domai 25.5 23 0.00078 28.9 1.2 29 335-363 9-41 (88)
176 2ehe_A Four and A half LIM dom 25.5 43 0.0015 26.1 2.9 39 335-385 15-55 (82)
177 3zyq_A Hepatocyte growth facto 25.3 22 0.00076 34.2 1.2 29 335-363 164-196 (226)
178 2dj7_A Actin-binding LIM prote 24.9 30 0.001 27.2 1.8 38 335-384 15-53 (80)
179 3mpx_A FYVE, rhogef and PH dom 24.2 16 0.00055 38.2 0.0 49 335-383 375-430 (434)
180 1x4u_A Zinc finger, FYVE domai 24.1 27 0.00092 28.1 1.3 27 336-362 15-45 (84)
181 1zfo_A LAsp-1; LIM domain, zin 23.9 40 0.0014 21.7 1.9 26 336-361 4-30 (31)
182 2d8y_A Eplin protein; LIM doma 23.6 43 0.0015 26.8 2.5 40 335-386 15-55 (91)
183 1a7i_A QCRP2 (LIM1); LIM domai 23.4 19 0.00064 28.3 0.2 40 335-386 7-47 (81)
184 3f6q_B LIM and senescent cell 23.4 32 0.0011 25.9 1.6 40 335-386 11-52 (72)
185 3c6w_A P28ING5, inhibitor of g 23.0 9.6 0.00033 28.8 -1.5 41 337-381 11-57 (59)
186 3o70_A PHD finger protein 13; 22.4 10 0.00035 29.5 -1.5 44 336-381 20-66 (68)
187 2d8v_A Zinc finger FYVE domain 21.7 33 0.0011 26.6 1.3 29 335-364 8-37 (67)
188 2fiy_A Protein FDHE homolog; F 20.4 16 0.00054 37.1 -1.0 45 334-382 181-231 (309)
189 1wee_A PHD finger family prote 20.1 8.7 0.0003 30.1 -2.4 45 337-382 18-66 (72)
No 1
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=116.99 Aligned_cols=48 Identities=38% Similarity=0.600 Sum_probs=44.7
Q ss_pred cccccchHhHHHHHHHHhhhCCCCchHHHHHHhhccCChhHHHHhhhc
Q 007840 539 RSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 586 (587)
Q Consensus 539 ~~~~~~~~~~~~m~~~v~~~~p~~p~~~~~~~l~~~~~~~~t~~~~~~ 586 (587)
+.++.+++|+.+|+++|+|||||+|.+.|++||++||||++|++||||
T Consensus 4 ~~~~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (58)
T 2ejs_A 4 GSSGASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 51 (58)
T ss_dssp CCSSCCCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHh
Confidence 455556799999999999999999999999999999999999999997
No 2
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=117.44 Aligned_cols=48 Identities=35% Similarity=0.601 Sum_probs=44.3
Q ss_pred cccccchHhHHHHHHHHhhhCCCCchHHHHHHhhccCChhHHHHhhhc
Q 007840 539 RSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 586 (587)
Q Consensus 539 ~~~~~~~~~~~~m~~~v~~~~p~~p~~~~~~~l~~~~~~~~t~~~~~~ 586 (587)
++++.+++|+.+|+++|+|||||+|.+.|++||++||||++|++|||+
T Consensus 4 ~~~~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (61)
T 2ekf_A 4 GSSGSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLE 51 (61)
T ss_dssp SSSCCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSCCHHHHHHHHHS
T ss_pred CCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 345556799999999999999999999999999999999999999997
No 3
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=99.45 E-value=4.8e-14 Score=107.18 Aligned_cols=42 Identities=40% Similarity=0.660 Sum_probs=41.0
Q ss_pred hHhHHHHHHHHhhhCCCCchHHHHHHhhccCChhHHHHhhhc
Q 007840 545 IANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 586 (587)
Q Consensus 545 ~~~~~~m~~~v~~~~p~~p~~~~~~~l~~~~~~~~t~~~~~~ 586 (587)
.+|+.+|+++|++||||+|.+.|..||++|+||++|++|||+
T Consensus 14 ~sql~~Mve~V~~mFPqv~~~~I~~DL~rTgSVe~TienILe 55 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 589999999999999999999999999999999999999997
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=99.25 Aligned_cols=50 Identities=32% Similarity=0.820 Sum_probs=42.6
Q ss_pred cCCCCCccccccccc---ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 333 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..+..|+||++.+.. ++.++|||.||..|+.+|+.+ +.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCc
Confidence 346689999999853 467899999999999999998 47899999998754
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4e-12 Score=103.64 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.0
Q ss_pred cCCCCCcccccccccc---cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..+..|+||++.+..+ +.+||||.||..|+.+|+++ +..||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCC
Confidence 3456899999999876 67899999999999999998 5799999998865
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.19 E-value=4.8e-12 Score=96.59 Aligned_cols=47 Identities=36% Similarity=0.838 Sum_probs=40.9
Q ss_pred CCCCCccccccccc---ccccc-cCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAK---AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~lp-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+.+|+||++++.+ +..++ |||.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 45689999999987 56677 9999999999999987 589999998764
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.19 E-value=9.4e-12 Score=102.06 Aligned_cols=51 Identities=45% Similarity=0.936 Sum_probs=43.5
Q ss_pred cCCCCCcccccccccc---cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
..+..|+||++.+..+ +.++|||.||..|+.+|+++ +..||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCcc
Confidence 4567899999999765 45699999999999999987 589999999987654
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.18 E-value=5.9e-12 Score=106.78 Aligned_cols=48 Identities=35% Similarity=0.782 Sum_probs=42.1
Q ss_pred CCCCCccccccccc---ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.. .+.+||||.||..|+.+|+++ +.+||+||+.+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 45689999999977 667899999999999999987 5799999998754
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=99.66 Aligned_cols=49 Identities=33% Similarity=0.792 Sum_probs=42.3
Q ss_pred CCCCCcccccccccccc---cccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~---lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.++.. ++|||.||..|+.+|+++ +..||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 46689999999987654 499999999999999998 47999999998653
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.18 E-value=1e-11 Score=99.71 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=43.3
Q ss_pred CCCCCcccccccccc-------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +..||+||+++...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChh
Confidence 356899999999887 77899999999999999998 58999999998754
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.17 E-value=1.1e-11 Score=94.40 Aligned_cols=47 Identities=36% Similarity=0.776 Sum_probs=41.0
Q ss_pred CCCCCccccccccc----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+..|+||++.+.+ ++.++|||.||..|+.+|+++ +..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 35689999999865 567899999999999999998 489999998764
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=7.5e-12 Score=103.89 Aligned_cols=48 Identities=38% Similarity=0.800 Sum_probs=40.0
Q ss_pred CCCCCccccccccc--------------ccccc-cCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAK--------------AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~--------------~~~lp-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+++|+||++++.+ .+.++ |||.||..||.+|+++ +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcch
Confidence 45689999999865 33454 9999999999999998 5799999998764
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=98.73 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=44.9
Q ss_pred CCCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCCc
Q 007840 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 388 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~~ 388 (587)
.+..|+||++.+.+++.+ +|||.||..|+..|++. +..||+||+.+...++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCcccc
Confidence 345899999999999887 99999999999999988 5899999999876543
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=98.43 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=42.8
Q ss_pred cCCCCCcccccccccc-------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..+..|+||++.+.++ +.++|||.||..|+.+|+++ +..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 3456899999999876 67899999999999999998 5899999998753
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=2e-11 Score=97.26 Aligned_cols=48 Identities=31% Similarity=0.766 Sum_probs=42.7
Q ss_pred CCCCCcccccccccc-cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +..||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 456899999999885 77899999999999999998 5899999998764
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.14 E-value=1.7e-11 Score=96.12 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=42.6
Q ss_pred CCCCcccccccccc-------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+.+|+||++.+.++ ..++|||.||..|+.+|+++ +..||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCcc
Confidence 45899999999876 67899999999999999998 58999999998754
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=9.2e-12 Score=100.42 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=43.8
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.+++.++|||.||..|+.+|+.+ ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCH
Confidence 45689999999999999999999999999999987 5899999999864
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=2.7e-11 Score=110.67 Aligned_cols=47 Identities=34% Similarity=0.814 Sum_probs=43.0
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.+.+|+.+||||.||..|+..|+.+ +..||+||+++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCcCCC
Confidence 4579999999999999999999999999999987 5899999998854
No 19
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.11 E-value=2.9e-11 Score=106.53 Aligned_cols=52 Identities=33% Similarity=0.692 Sum_probs=41.3
Q ss_pred CCCCccccccccccc------------------ccccCCcchHHHHHHHHHhCC-CCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAK------------------KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~------------------~lpC~H~Fh~~Cl~~wl~~~~-~~~~~CP~CR~~l~~~ 386 (587)
++.|+||++++.++. .++|||.||..||.+|+.... ..+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999996543 579999999999999996421 1257999999987643
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.8e-11 Score=95.26 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=43.5
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.++|||.||..|+.+|+++. ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS---SPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChh
Confidence 345899999999999999999999999999999643 57899999988653
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.1e-11 Score=98.03 Aligned_cols=47 Identities=23% Similarity=0.498 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+..|+||++.+.+++.++|||.||..|+.+|++. ...||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 45589999999999999999999999999999987 589999999875
No 22
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.07 E-value=5.4e-11 Score=103.84 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=40.6
Q ss_pred CCCCCcccccccccc------------------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.++.|+||++.+.++ ..++|+|.||..||.+|+.+ +.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCcce
Confidence 467899999999754 33799999999999999998 589999999864
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=7.6e-11 Score=95.90 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=43.0
Q ss_pred CCCCCcccccccccccccc-cCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.+++.++ |||.||..|+..|+++.. ...||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence 3458999999999999999 999999999999998731 3689999997544
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.2e-11 Score=96.15 Aligned_cols=52 Identities=23% Similarity=0.594 Sum_probs=44.1
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.++|||.||..|+..|++... ....||+||+++...
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 4568999999999999999999999999999997311 157899999988654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=7.8e-11 Score=96.53 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.3
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.|.+|+.++|||.||..|+..|++++ +..||+||+++...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 355899999999999999999999999999999864 57999999988653
No 26
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.5e-11 Score=96.52 Aligned_cols=48 Identities=33% Similarity=0.771 Sum_probs=43.0
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+ +.++|||.||..|+.+|+.+ ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC----cCcCCCcCCcccCC
Confidence 45689999999998 88999999999999999986 58999999988754
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=96.91 Aligned_cols=53 Identities=30% Similarity=0.558 Sum_probs=44.3
Q ss_pred cCCCCCccccccccc----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 333 AYDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..+..|+||++.+.+ ++.++|||.||..|+.+|++... ....||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccch
Confidence 345689999999998 88899999999999999998731 137899999987653
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=103.02 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=43.5
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.+|+.++|||.||..|+..|+..+ ...||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 345899999999999999999999999999999853 4699999998864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=99.89 Aligned_cols=48 Identities=35% Similarity=0.818 Sum_probs=43.0
Q ss_pred CCCCcccccccccccc-cccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~-lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.+.+++. ++|||.||..||..|+... ...||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCH
Confidence 3489999999999998 9999999999999999983 2699999999864
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=2.4e-10 Score=90.32 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=41.3
Q ss_pred CCCCccccc-cccccc----ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICRE-PMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e-~~~~~~----~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+..|+||++ .+.++. .++|||.||..|+.+|+.++ ...||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccc
Confidence 457999999 787774 57999999999999998764 47899999998654
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=89.64 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=39.5
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
..+..|+||++.+.+++.++|||.||..|+.+|+++.. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 34568999999999999999999999999999998521 14689998
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=3.6e-10 Score=93.49 Aligned_cols=53 Identities=30% Similarity=0.605 Sum_probs=44.9
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCC--CCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~--~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.++|||.||..|+..|+.+.. .....||.||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4568999999999999999999999999999998731 1147899999998654
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.9e-10 Score=93.30 Aligned_cols=53 Identities=30% Similarity=0.535 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhC--CCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.++|||.||..|+..|+.+. ......||.||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 456899999999999999999999999999999861 11147999999998753
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.96 E-value=2.9e-10 Score=96.14 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=42.7
Q ss_pred CCCCCcccccccccccccc-cCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+..|+||++.+.+|+.++ |||.||..||..|+.+.. ...||+||.++.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 4568999999999999999 999999999999997631 369999999863
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.95 E-value=2.1e-10 Score=98.51 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=43.1
Q ss_pred CCCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.+++.+ +|||.||..|+..|+.. +..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 345899999999999888 89999999999999987 5899999998765
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.94 E-value=3.5e-10 Score=98.69 Aligned_cols=49 Identities=22% Similarity=0.524 Sum_probs=44.2
Q ss_pred CCCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.+ +|||.||..|+..|+.. +..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 456899999999999997 99999999999999987 58999999998754
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.94 E-value=1.3e-10 Score=95.12 Aligned_cols=53 Identities=25% Similarity=0.486 Sum_probs=44.5
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCC---CCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.++|||.||..|+..|+.... .....||+||.++...
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4568999999999999999999999999999997621 1247899999998653
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.6e-10 Score=86.26 Aligned_cols=45 Identities=27% Similarity=0.807 Sum_probs=38.4
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (587)
.+..|+||++.+.+++.++|||.||..|+.+|+.+. .....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 456899999999999999999999999999997541 115799998
No 39
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.91 E-value=1.5e-10 Score=102.65 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=1.0
Q ss_pred CCCCCcccccccccc------------------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.++.|+||++++.++ ..++|+|.||..||.+|+.+ +.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeeee
Confidence 357999999999752 12589999999999999998 5899999998643
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=1e-09 Score=95.99 Aligned_cols=50 Identities=28% Similarity=0.605 Sum_probs=43.0
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..|+||++.+.+++.++|||.||..|+..|+.... ....||+||.++...
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCCTT
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCCHh
Confidence 47999999999999999999999999999998631 125899999988754
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.88 E-value=8.3e-10 Score=102.32 Aligned_cols=49 Identities=27% Similarity=0.540 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+..|+||++.+.+++.++|||.||..|+..|+... ...||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 45899999999999999999999999999999873 45899999998653
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.87 E-value=1.9e-10 Score=101.50 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=42.8
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.+.+++.++|||.||..|+..|+.++ ...||.||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 34799999999999999999999999999999764 4789999998864
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.86 E-value=8.1e-10 Score=99.09 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.0
Q ss_pred CCCCCcccccccccc-------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
.+.+|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCcccc
Confidence 345899999999887 78899999999999999987 579999999987543
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.86 E-value=7.5e-10 Score=97.80 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=44.3
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.++|||.||..|+..|+... ...||+||.++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 346899999999999999999999999999999874 46899999998653
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=1.1e-09 Score=102.90 Aligned_cols=47 Identities=34% Similarity=0.667 Sum_probs=42.2
Q ss_pred CCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..|+||++.+.+++.+ +|||.||..|+..|+..+ ...||+||.++..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 4899999999999887 999999999999999964 4789999998854
No 46
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=89.55 Aligned_cols=51 Identities=25% Similarity=0.624 Sum_probs=41.5
Q ss_pred CCCCCccccccccc--ccccccC-----CcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAK--AKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~lpC~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.++.|.||++++++ +..+||+ |.||..||.+|+.... ..+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecC
Confidence 45689999998853 4567996 9999999999998731 25899999998754
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.82 E-value=1.9e-09 Score=90.13 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=43.6
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.|.+|+.++|||+|++.||..|+.. ..+||.||.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCCh
Confidence 34589999999999999999999999999999997 5899999998764
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.82 E-value=1.3e-09 Score=96.65 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=43.0
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.+.+++.++|||.||..|+..|+.+. ...||+||.++..
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCH
Confidence 45899999999999999999999999999999874 3499999998865
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.81 E-value=3.9e-09 Score=86.88 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=40.0
Q ss_pred CCCCCcccccccc--cccccc--cCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMA--KAKKLL--CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~--~~~~lp--C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+.+|+||++++. +...+| |||.||..|+..+++.. ...||.||+++...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCC
Confidence 4558999999985 344445 99999999999987653 57999999998754
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=6.6e-09 Score=104.91 Aligned_cols=49 Identities=16% Similarity=-0.026 Sum_probs=43.3
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
..-.|+||++.|.+|+.+||||+||+.||..|+..+ +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCch
Confidence 345899999999999999999999999999999874 3459999998854
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.78 E-value=2.2e-09 Score=92.67 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=43.1
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.|.+|+.++|||+||+.||..|+.. ..+||.||.++..
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred hhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 4589999999999999999999999999999986 5899999998764
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=2.1e-09 Score=96.31 Aligned_cols=50 Identities=32% Similarity=0.659 Sum_probs=43.8
Q ss_pred cCCCCCcccccccccc-------cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+.+..|+||++.+.++ +.++|||.||..|+.+|++. +.+||+||.++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChh
Confidence 3456899999999876 67899999999999999998 58999999998764
No 53
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=4.3e-09 Score=85.50 Aligned_cols=54 Identities=19% Similarity=0.440 Sum_probs=42.8
Q ss_pred cCCCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCCc
Q 007840 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 388 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~~ 388 (587)
+..+.|+||++.+...++- .|+|.||..|+.+|+++.. ..+||.||.++....+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCC
Confidence 3456899999999765543 7999999999999998731 2789999998875433
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.75 E-value=3.6e-09 Score=90.89 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=43.5
Q ss_pred CCCCCcccccccccccccccC-CcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.|.+|+.++|| |+||+.||..|+.. ..+||.||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 345899999999999999999 99999999999987 4799999998764
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.74 E-value=3.6e-09 Score=83.35 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=41.7
Q ss_pred cCCCCCccccccccccccc--ccCCc-chHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 333 AYDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l--pC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
+.+..|+||++...++..+ ||||. ||..|...|.++ +..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhh
Confidence 3456899999999888777 99998 999999999887 479999999875
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=2e-09 Score=82.68 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=39.8
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+..|+||++.+.+++.++|||.||..|+..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 34589999999999999999999999999772 47899999987653
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=4.6e-09 Score=110.78 Aligned_cols=48 Identities=33% Similarity=0.655 Sum_probs=43.2
Q ss_pred CCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..|+||++.+.+++.+||||.||..|+..|+.+. ...||+||.++...
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCCc
Confidence 5899999999999999999999999999999843 58999999988653
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.73 E-value=4e-09 Score=83.38 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=41.4
Q ss_pred CCCCCccccccccccccc--ccCCc-chHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l--pC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+..|+||++...++..+ ||||. ||..|+..|.++ +..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchh
Confidence 345899999999998876 99999 899999999987 578999999875
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.68 E-value=2.8e-09 Score=97.73 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.+|+.++|||.||..||.+|+..+ ...||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC---CCCCCCCCCcccc
Confidence 455899999999999999999999999999999864 3589999998643
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=7.7e-09 Score=91.53 Aligned_cols=45 Identities=24% Similarity=0.678 Sum_probs=40.6
Q ss_pred CCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.+.+|+.+ +|||.||..|+..|+. ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 45899999999999999 9999999999999986 489999998743
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.61 E-value=1.8e-08 Score=95.66 Aligned_cols=48 Identities=17% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..||||++.|.+|+.+||||+||+.||..|+..+ +.+||.||.++..
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCCh
Confidence 34799999999999999999999999999999874 2479999998764
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.58 E-value=8.6e-09 Score=83.77 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=38.5
Q ss_pred CCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.+.+++.+||||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 4589999999999999999999 999999877 489999998754
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=2.8e-08 Score=84.54 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=41.6
Q ss_pred CCCCcccccccccccccc-cCCcchHHHHHHHHHhC--CCCCCCCcC--cCcc-ccc
Q 007840 335 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQG--LNEMYSCPT--CRKP-LFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~wl~~~--~~~~~~CP~--CR~~-l~~ 385 (587)
+..|+||++.|.+|+.++ |||+|++.||..|+.++ .....+||+ |+.. +..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 447999999999999996 99999999999999863 111358999 9876 543
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.50 E-value=3.7e-08 Score=92.73 Aligned_cols=49 Identities=27% Similarity=0.509 Sum_probs=43.3
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
+..|+||++.+.+|+.++|||.||..|+.+|+..+ ...||+||.++...
T Consensus 18 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (170)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchh
Confidence 45899999999999999999999999999999874 35999999988653
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=7.9e-08 Score=78.15 Aligned_cols=43 Identities=23% Similarity=0.554 Sum_probs=37.6
Q ss_pred CCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++.+.+++.+||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA--------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC--------CCCCccCCceecC
Confidence 3479999999999999999999 99999843 3789999998754
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=9e-08 Score=76.49 Aligned_cols=45 Identities=22% Similarity=0.604 Sum_probs=39.2
Q ss_pred cCCCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+.+..|.||++...+++.+||||. ||..|+.. ...||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------CCCCCCCCcchhc
Confidence 456789999999999999999999 99999872 3789999998864
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.3e-07 Score=91.34 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=42.5
Q ss_pred CCCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcC--cCcccccC
Q 007840 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT--CRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~--CR~~l~~~ 386 (587)
+-.||||++.|.+|++. .|||+||+.||..|++.+ ....||+ ||+.+...
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECGG
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCchh
Confidence 35799999999999985 999999999999999763 1368999 99987653
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=1.4e-07 Score=77.67 Aligned_cols=43 Identities=26% Similarity=0.506 Sum_probs=37.8
Q ss_pred CCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|+||++...+++.+||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhC
Confidence 3589999999999999999999 999998654 489999998764
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.26 E-value=3.3e-07 Score=94.13 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=39.2
Q ss_pred CCCCCccccccccccc--------ccccCCcchHHHHHHHHHhCCC-------CCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAK--------KLLCNHLFHLACLRSWLDQGLN-------EMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~--------~lpC~H~Fh~~Cl~~wl~~~~~-------~~~~CP~CR~~l~~ 385 (587)
...+|+||++.+.+.. ..+|||.||..||.+|++.... -...||.||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4568999999887621 2479999999999999986210 01469999998764
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.24 E-value=4.4e-07 Score=70.90 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=42.9
Q ss_pred CCCccccccccccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC
Q 007840 336 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~ 387 (587)
..|+||.+.|.+|+.+ +|||+|.+.||.+|+++ +.+||+++.++...+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhh
Confidence 4799999999999999 89999999999999987 467999999986543
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.18 E-value=8.9e-07 Score=68.93 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=39.2
Q ss_pred CCCCCcccccccccccccccC--C---cchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 334 YDDECAICREPMAKAKKLLCN--H---LFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~--H---~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.++.|.||+++..++..+||. | .||..|+.+|+.... +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 456899999987666677865 4 899999999997531 479999998764
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.08 E-value=5.1e-07 Score=94.43 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=39.2
Q ss_pred CCCCCcccccccccccccccCCc-chHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 45689999999999999999999 999999876 489999998754
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.06 E-value=1.8e-06 Score=73.03 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=37.9
Q ss_pred CCCCccccccccccccc---ccCCcchHHHHHHHHHhC----CCCCCCCcC--cCcc
Q 007840 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQG----LNEMYSCPT--CRKP 382 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~----~~~~~~CP~--CR~~ 382 (587)
..+|+||++++..+..+ +|||.||..|+..+++.. ......||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34799999999877543 799999999999998742 111358999 9987
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.71 E-value=2e-05 Score=66.78 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=38.8
Q ss_pred CCccccccccc-ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 337 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 337 ~C~IC~e~~~~-~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.|.+|--++.. ++.+||+|+||.+|...|.+++ .+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeee
Confidence 48888877765 5678999999999999998764 5899999999864
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=72.21 Aligned_cols=52 Identities=19% Similarity=0.463 Sum_probs=41.3
Q ss_pred CCCCcccccccccccccc-cCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCCc
Q 007840 335 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 388 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~~ 388 (587)
-..|.||.+-...+++-+ |+|.||..|+..|++... ...||.|+.+++...|
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCC
Confidence 347999999987766543 999999999999997631 3599999998866533
No 76
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00073 Score=53.37 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhhCCCCchHHHHHHhhccC-ChhHHHHhhhcC
Q 007840 547 NILAMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQM 587 (587)
Q Consensus 547 ~~~~m~~~v~~~~p~~p~~~~~~~l~~~~-~~~~t~~~~~~~ 587 (587)
......++++++||++..++|...|...+ +||.||+.||+|
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34666789999999999999999998777 899999999986
No 77
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=95.42 E-value=0.017 Score=41.88 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=34.7
Q ss_pred HHHHHHHhhhCCCCchHHHHHHhhccC-ChhHHHHhhhc
Q 007840 549 LAMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQ 586 (587)
Q Consensus 549 ~~m~~~v~~~~p~~p~~~~~~~l~~~~-~~~~t~~~~~~ 586 (587)
+....|++.|||--+.++|++.|++|| .|...|+|||-
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 456789999999999999999999998 79999999985
No 78
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.27 E-value=0.027 Score=44.74 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=38.7
Q ss_pred hHhHHHHHHHHhhhCCCCchHHHHHHhhcc-CChhHHHHhhhc
Q 007840 545 IANILAMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQ 586 (587)
Q Consensus 545 ~~~~~~m~~~v~~~~p~~p~~~~~~~l~~~-~~~~~t~~~~~~ 586 (587)
...+..+.+||+|+||+.-..-|.+=|..- ++|+.+|++|||
T Consensus 10 ~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 488999999999999999999999988866 599999999998
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.25 E-value=0.055 Score=45.02 Aligned_cols=45 Identities=31% Similarity=0.602 Sum_probs=36.5
Q ss_pred CCCcccccccccccccccC-CcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..|-.||-..+. .+.|. |..|..|+...+.. +..||+|.++++..
T Consensus 29 ~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENKG--LVECNNHYLCLNCLTLLLSV----SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSS----SSEETTTTEECCCC
T ss_pred ccChhhccccCC--eeeecchhhHHHHHHHHHhh----ccCCcccCCcCCcc
Confidence 479999976553 34565 99999999998887 68999999999764
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.14 E-value=0.066 Score=42.05 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=35.0
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.+..|.||.+.-+-..--.|...||..|+...+.........||.|+..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4567999986422111126889999999988887654456799999764
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.00 E-value=0.071 Score=44.92 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.0
Q ss_pred CCCCcccccc-cccccc--cccCCcchHHHHHHH
Q 007840 335 DDECAICREP-MAKAKK--LLCNHLFHLACLRSW 365 (587)
Q Consensus 335 ~~~C~IC~e~-~~~~~~--lpC~H~Fh~~Cl~~w 365 (587)
+..|.||.+. +.++++ ++|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4579999976 567776 899999999999873
No 82
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=91.77 E-value=0.17 Score=38.70 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=33.6
Q ss_pred HHHHHHHhhhCCCCchHHHHHHhhcc-CChhHHHHhhhcC
Q 007840 549 LAMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQM 587 (587)
Q Consensus 549 ~~m~~~v~~~~p~~p~~~~~~~l~~~-~~~~~t~~~~~~~ 587 (587)
+...++.+|+||++..++|.+=|... +.||.||+.||+|
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45668899999999999999988554 5699999999987
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.08 E-value=0.12 Score=42.16 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=31.1
Q ss_pred cCCCCCccccccccccccc---ccCCcchHHHHHHHH--Hh----------CCCCCCCCcCcC
Q 007840 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWL--DQ----------GLNEMYSCPTCR 380 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl--~~----------~~~~~~~CP~CR 380 (587)
..|+.|.||-. +.....+ -|+-+||..|+++-= +. ......+||.|.
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 46789999963 2333344 488999999998851 11 122357899994
No 84
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=90.03 E-value=0.24 Score=37.11 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=28.8
Q ss_pred HhHHHHHHHHhhhCCCCchHHHHHHhhc-cCChhHHHHhhhcC
Q 007840 546 ANILAMAETVREVLPHMPEDLIFQDLQR-TNSATITVNNLLQM 587 (587)
Q Consensus 546 ~~~~~m~~~v~~~~p~~p~~~~~~~l~~-~~~~~~t~~~~~~~ 587 (587)
.+.....+++++|||.+..++|-.=|.. -+.++.||+.+|+|
T Consensus 10 ~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 5667888999999999999988766654 35699999999987
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.54 E-value=1.5 Score=51.10 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=42.0
Q ss_pred CCCcccccccccccccccC-CcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
-.|||-.+-|.+|+.+|.| +.+-+.+|.+|+.+ +.+||.=|.++...
T Consensus 892 F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 892 FLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLE 939 (968)
T ss_dssp GBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGG
T ss_pred hCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcc
Confidence 3699999999999999998 58999999999987 47999999988653
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.96 E-value=0.29 Score=37.58 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=33.2
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.+..|.+|.+.-+-..--.|...||..|+..-+.+.......||.|++.
T Consensus 10 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4568999987421111126888999999987655443446789999753
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.51 E-value=0.18 Score=38.77 Aligned_cols=51 Identities=24% Similarity=0.471 Sum_probs=33.8
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
..+..|.+|.+.-+-..--.|...||..|+..-+.+.......||.|+...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346689999864221111268899999999765554333457899997653
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.18 E-value=0.35 Score=35.53 Aligned_cols=45 Identities=36% Similarity=0.805 Sum_probs=31.2
Q ss_pred CCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
.|.||...-+....+ .|...||..|+.+=+.+...+...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764433333 688999999997655443334578999975
No 89
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=83.27 E-value=0.76 Score=33.76 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=32.1
Q ss_pred HHHHHHhhhCCCCchHHHHHHhhcc-CChhHHHHhhhcC
Q 007840 550 AMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQM 587 (587)
Q Consensus 550 ~m~~~v~~~~p~~p~~~~~~~l~~~-~~~~~t~~~~~~~ 587 (587)
.=.++.+||||.+....|..=|... +.+|.+++.||+|
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3457788999999999999988765 5799999999875
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.00 E-value=0.18 Score=48.47 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=35.7
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
..++.|.+|.+.-+-...-.|...||..|+.+.+.....+...||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356789999865331112258899999999877665444467899998753
No 91
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.34 E-value=0.47 Score=44.58 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=34.8
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
.++.|.+|.+.-+-...-.|.-.||..|+.+-+.....+...||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999865321111258899999999776665444467899998753
No 92
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=80.23 E-value=0.22 Score=39.71 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=33.7
Q ss_pred CCCCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+..|.+|.........+ .|.--||..|+..-..........||.|+..+..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34699998765432233 5888999999865433222235789999876543
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.36 E-value=0.55 Score=38.88 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=34.7
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
..++.|.+|.+.-+-...-.|.-.||..|+.+-+.....+...||.|+..
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45678999997532111126888999999987665544446789999864
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=77.47 E-value=0.48 Score=44.84 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=33.8
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
++.|.+|.+.-+--..-.|...||..|+.+-+.....+...||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 568999997643222336889999999976555433345789999865
No 95
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=76.03 E-value=1.9 Score=34.78 Aligned_cols=45 Identities=24% Similarity=0.526 Sum_probs=33.3
Q ss_pred CCCCccccccccccccccc----CCcchHHHHHHHHHhCC-CCCCCCcCc
Q 007840 335 DDECAICREPMAKAKKLLC----NHLFHLACLRSWLDQGL-NEMYSCPTC 379 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC----~H~Fh~~Cl~~wl~~~~-~~~~~CP~C 379 (587)
...|.+|.|.+++.....| +|.||..|-+..+++.. .....||-=
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 3479999999999877666 59999999999887631 123455544
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.67 E-value=0.2 Score=37.75 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=31.7
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
.++.|.+|.+.-.-..--.|...||..|+.+-+.........||.|+.
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 466899998752111112688999999997655443334567888854
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.24 E-value=0.21 Score=38.12 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=33.5
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
.++.|.+|.+.-.-..--.|...||..|+.+-+.....+...||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45689999875211111268899999999865554333457899997654
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.35 E-value=0.43 Score=37.16 Aligned_cols=49 Identities=33% Similarity=0.613 Sum_probs=32.8
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.++.|.||.+.-+-..--.|.-.||..|+.+-+.........||.|+..
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4678999987522111126888999999976554433345789999754
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.48 E-value=2.6 Score=38.00 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=34.7
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHHHHh-------CCCCCCCCcCcCc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ-------GLNEMYSCPTCRK 381 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~-------~~~~~~~CP~CR~ 381 (587)
..++.|.+|.+.-+-.---.|-..||..|+.+-+.. .......||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 457799999986543222378899999999976531 1223678999974
No 100
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.71 E-value=0.85 Score=39.12 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=31.7
Q ss_pred CCCCCcccccccccccc---cccCCcchHHHHHHHHHhCCCCCCCCcCcC
Q 007840 334 YDDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~---lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (587)
.++.|.+|.+.-+.... -.|+..||..|+.............||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999887543222 378899999999776542112246788775
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.10 E-value=0.43 Score=39.84 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=34.0
Q ss_pred CCCCCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.+..|.||...-.....+ .|...||..|+.+-+.........||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 356899999875433333 6889999999976554433345779999764
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.36 E-value=0.55 Score=38.80 Aligned_cols=52 Identities=17% Similarity=0.546 Sum_probs=35.7
Q ss_pred CCCCCccccccccc--cccc---ccCCcchHHHHHHHHHh----CCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~l---pC~H~Fh~~Cl~~wl~~----~~~~~~~CP~CR~~l~~ 385 (587)
.+..|.+|...-.. ...+ .|...||..|+.+-+.. .......||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 46789999976432 2233 68899999999876542 22335789999876543
No 103
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=67.02 E-value=0.31 Score=43.41 Aligned_cols=85 Identities=7% Similarity=0.044 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCCCCCCcCcCcccccCCc-----ccccCCCCCCCCChHHH-----HhhhccCCCC------CCCCC-C
Q 007840 359 LACLRSWLDQGLNEMYSCPTCRKPLFVGRR-----EIEANSRPGEVSSDEQL-----ARQLSMGLDR------QNNTG-Q 421 (587)
Q Consensus 359 ~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~g~~~------~~~~~-h 421 (587)
++|+.+|-+. .||.|+........ .+.....+.++...+++ ++..++|++. .+|+. |
T Consensus 1 ~~~~~~W~~e------~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H 74 (129)
T 2g45_A 1 KQEVQAWDGE------VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH 74 (129)
T ss_dssp ----------------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHH
T ss_pred ChHHHhhcCC------CCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHH
Confidence 3688899643 57777665322111 11123346666655543 7788888875 44443 5
Q ss_pred CC-CCCCCCCCCC--CCCCCCCccCCCCCCCcc
Q 007840 422 TL-PTGVFPNQTQ--PPVEGSPWRNAGLDSSWL 451 (587)
Q Consensus 422 ~~-~~~~~p~~~~--~~~~~~~w~~aG~~~s~~ 451 (587)
+. +.|....++. .++++++|.|+. +.++
T Consensus 75 ~~~t~H~l~v~l~t~~~~~~~vwcY~c--d~~V 105 (129)
T 2g45_A 75 YRETGYPLAVKLGTITPDGADVYSYDE--DDMV 105 (129)
T ss_dssp HHHHCCCEEEETTCCBTTBCCEEETTT--TEEE
T ss_pred hhhcCCCEEEECCCCCCCCCeEEECCC--CCEe
Confidence 55 5666555432 123478999998 7776
No 104
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=65.67 E-value=0.38 Score=55.93 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=43.9
Q ss_pred cccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccCC-----cccccCCCCCCCCChHHH-----HhhhccCCCC-----
Q 007840 351 LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR-----REIEANSRPGEVSSDEQL-----ARQLSMGLDR----- 415 (587)
Q Consensus 351 lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~----- 415 (587)
+.+.+.++..|+..|-.. .||.|+....... ........|.++...+++ |+..+||+..
T Consensus 174 ~~~~~~~~~~~~~~w~~~------~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~ 247 (854)
T 3ihp_A 174 LSADSASRKQEVQAWDGE------VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSG 247 (854)
T ss_dssp TC----------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCB
T ss_pred HhcCCHHHHHHHHhhcCc------cCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCC
Confidence 577899999999999754 5888887643211 111223456677665553 7888888764
Q ss_pred -CCCCC-CCC-CCCCCCCCCCC--CCCCCCccCCCCCCCcc
Q 007840 416 -QNNTG-QTL-PTGVFPNQTQP--PVEGSPWRNAGLDSSWL 451 (587)
Q Consensus 416 -~~~~~-h~~-~~~~~p~~~~~--~~~~~~w~~aG~~~s~~ 451 (587)
.+|+. |+. +.|.....+.. ++++.+|.|+. +.++
T Consensus 248 ~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~--~~~v 286 (854)
T 3ihp_A 248 GNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDE--DDMV 286 (854)
T ss_dssp CCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTT--TEEC
T ss_pred CchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccC--CCee
Confidence 33443 544 56665554321 23478999887 5554
No 105
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=64.55 E-value=0.34 Score=42.93 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=56.3
Q ss_pred ccccCCcchHHHHHHHHHhCC-CCCCCCcCcCcccccCCcccccCCCCCCCCChHH-----HHhhhccCCCC-CCCCC-C
Q 007840 350 KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQ-----LARQLSMGLDR-QNNTG-Q 421 (587)
Q Consensus 350 ~lpC~H~Fh~~Cl~~wl~~~~-~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~-~~~~~-h 421 (587)
..+|.|+++..++..|-..-. .....|+.|+..-...+ ....++....+ .++..++|++. .+|+. |
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~------~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H 77 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKD------KAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKH 77 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSC------SSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHH
T ss_pred CCCCcChhhccccccccccccCCCCCcCccccccccccc------cccccccccccceeeeeCCccccCCCCcchHHHHH
Confidence 457999999999887764311 11257999987521110 01112222222 37788999974 45554 5
Q ss_pred CC----CCCCCCCCCCCCCCCCCccCCCCCCCccc
Q 007840 422 TL----PTGVFPNQTQPPVEGSPWRNAGLDSSWLH 452 (587)
Q Consensus 422 ~~----~~~~~p~~~~~~~~~~~w~~aG~~~s~~~ 452 (587)
+. +.|.+..++ ++.++|.|+. +.|++
T Consensus 78 ~~~~~~t~H~l~~~l---~t~~vwCY~c--d~~V~ 107 (126)
T 2i50_A 78 YLTPRSEPHCLVLSL---DNWSVWCYVC--DNEVQ 107 (126)
T ss_dssp HHSCCSSCCCEEEET---TTCCEEETTT--TEEEC
T ss_pred HhCcCCCCCcEEEEC---CCCeEEeCCC--CcEEE
Confidence 55 356666666 3678999998 88876
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.68 E-value=1.3 Score=38.06 Aligned_cols=45 Identities=29% Similarity=0.672 Sum_probs=31.1
Q ss_pred CCccccccccc-cccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 337 ECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~~-~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
.|.+|.+.-.+ ...+ .|...||..|+.+-+.........||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57888765322 2233 588999999997766554444578999975
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=63.64 E-value=1.3 Score=34.83 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=29.8
Q ss_pred CCccccccccccccc---ccCCcchHHHHHHHHHhCCCC-CCCCcCcCc
Q 007840 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 381 (587)
.|.+|...-.....+ .|...||..|+.+-+.+...+ .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776543333344 588999999998666543333 578999975
No 108
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=63.06 E-value=1 Score=36.24 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=29.2
Q ss_pred CCccccccccccccc---ccCCcchHHHHHHHHHhCCCCC-CCCcCcCc
Q 007840 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEM-YSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~-~~CP~CR~ 381 (587)
.|.+|...-.....+ .|...||..|+.+-|....... -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355565544333344 5888999999987766543333 68999975
No 109
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.00 E-value=1.3 Score=35.61 Aligned_cols=46 Identities=30% Similarity=0.726 Sum_probs=31.1
Q ss_pred CCCccccccccccccc---ccCCcchHHHHHHHHHhCCCC-CCCCcCcCc
Q 007840 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 381 (587)
..|.||...-.....+ .|...||..|+.+-+.....+ .-.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3678888643333333 688999999998665543333 478999975
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=61.96 E-value=1.4 Score=42.85 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=27.4
Q ss_pred CCccccccccccccc---ccCCcchHHHHHHHHHhCCCC-CCCCcCcCc
Q 007840 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 381 (587)
.|.+|...-.....+ .|...||..|+.+-+.....+ .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577887543333333 688999999998766554333 468999975
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.76 E-value=7.5 Score=34.37 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=33.6
Q ss_pred cCCCCCcccccccccccccccCCcchHHHHHHH-----HHh--CCCCCCCCcCcCcc
Q 007840 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSW-----LDQ--GLNEMYSCPTCRKP 382 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~w-----l~~--~~~~~~~CP~CR~~ 382 (587)
..++.|.+|.+.-+-.---.|-..||..|+.+- +++ .......|+.|+.+
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 456789999976443222268899999999875 222 12235899999653
No 112
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.60 E-value=4.6 Score=31.80 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=29.5
Q ss_pred CCCCccccccccccccc---c--cC-CcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
...| ||..... ...+ . |. .-||..|+. +.........||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3457 8987543 3333 3 65 689999996 444333568899997643
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=55.47 E-value=0.9 Score=35.09 Aligned_cols=50 Identities=22% Similarity=0.562 Sum_probs=33.2
Q ss_pred CCCCCccccccccc--cccc---ccCCcchHHHHHHHHHh---CCCCCCCCcCcCccc
Q 007840 334 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ---GLNEMYSCPTCRKPL 383 (587)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~l---pC~H~Fh~~Cl~~wl~~---~~~~~~~CP~CR~~l 383 (587)
.+..|.+|.....+ ...+ .|.-.||..|+..-+.. .......||.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45689999976432 3333 68899999999764422 012357899997643
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.44 E-value=5.9 Score=32.85 Aligned_cols=43 Identities=26% Similarity=0.722 Sum_probs=28.3
Q ss_pred CCCccccccccccccc---c--cC-CcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 336 DECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
..| ||..... ...+ . |. .-||..|+. +.........||.|+..
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 356 9988643 2333 3 55 579999996 44433346889999864
No 115
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=51.02 E-value=5.2 Score=30.93 Aligned_cols=46 Identities=24% Similarity=0.589 Sum_probs=28.7
Q ss_pred CCCCcccccccccccc----c-ccCCcchHHHHHH------HHHhCCCCCCCCcCcC
Q 007840 335 DDECAICREPMAKAKK----L-LCNHLFHLACLRS------WLDQGLNEMYSCPTCR 380 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~----l-pC~H~Fh~~Cl~~------wl~~~~~~~~~CP~CR 380 (587)
...|++|..++.+... - .|.--||..|+.- -+.........||.|+
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4579999998765432 2 6888899999831 1221111246788885
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=48.94 E-value=6.2 Score=33.74 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=33.1
Q ss_pred cCCCCCccccccccc--ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 333 AYDDECAICREPMAK--AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 333 ~~~~~C~IC~e~~~~--~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..++.|.+|.+.-+- ...-.|-..||..|+. +.+...+...||.|+-.+...
T Consensus 13 ~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 356789999853211 1111477899999997 544333456799887666543
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.94 E-value=9.1 Score=34.02 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=18.6
Q ss_pred CCCCCccccccccc--c---cccccCCcchHHH
Q 007840 334 YDDECAICREPMAK--A---KKLLCNHLFHLAC 361 (587)
Q Consensus 334 ~~~~C~IC~e~~~~--~---~~lpC~H~Fh~~C 361 (587)
.+..|++|..++.- . ....|.|.+|..|
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 46689999999841 1 2235677666666
No 118
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=47.58 E-value=44 Score=27.47 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=34.5
Q ss_pred CCCCccccccccc---c-c---ccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAK---A-K---KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~---~-~---~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|.||-++.-. . . .-.|+--.|+.|..-=...+ ++.||.|+.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCcccc
Confidence 4689999998632 1 1 12678778999987655554 6899999987753
No 119
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=47.48 E-value=4.6 Score=37.91 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=31.6
Q ss_pred CCCCccccccccccc----cc---ccCCcchHHHHHH------HHHhC-CCCCCCCcCcCccc
Q 007840 335 DDECAICREPMAKAK----KL---LCNHLFHLACLRS------WLDQG-LNEMYSCPTCRKPL 383 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~----~l---pC~H~Fh~~Cl~~------wl~~~-~~~~~~CP~CR~~l 383 (587)
+..|+||...+.+.. .+ .|..-||..|+.- -+... ......||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 457999998886543 23 5889999999731 11100 00148999998753
No 120
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=46.99 E-value=14 Score=38.30 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=33.4
Q ss_pred CCCCcccccccccccc-cccCCcchHH--HHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAKK-LLCNHLFHLA--CLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~-lpC~H~Fh~~--Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
...||+-...+..|.+ ..|.|.-|.+ -......+. ....||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCCGG
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccCHH
Confidence 3579999999988765 5899984433 232322222 258999999887553
No 121
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.60 E-value=1.7 Score=33.23 Aligned_cols=49 Identities=27% Similarity=0.616 Sum_probs=31.3
Q ss_pred CCCCCcccccccccc-ccc---ccCCcchHHHHHHHHHh-CCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKA-KKL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~l---pC~H~Fh~~Cl~~wl~~-~~~~~~~CP~CR~~ 382 (587)
.+..|++|..+..+. ..+ .|..-||..|+.--... .......||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345799999887532 222 68888999998432111 01236889999763
No 122
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.47 E-value=19 Score=31.37 Aligned_cols=27 Identities=19% Similarity=0.624 Sum_probs=21.5
Q ss_pred CCCcccccccccccc----cccCCcchHHHH
Q 007840 336 DECAICREPMAKAKK----LLCNHLFHLACL 362 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl 362 (587)
..|.+|...|.-..+ -.||++||..|.
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 479999999875422 379999999995
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=44.70 E-value=2.3 Score=36.37 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=30.8
Q ss_pred CCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.|.+|...-++...+ .|...||..|+.+-+.........||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466777665443344 6889999999976555433345789999654
No 124
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.35 E-value=10 Score=29.78 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=30.8
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|+-|-+.+.......-+..||..| ..|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC------------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT------------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc------------CeeCCCCCCCC
Confidence 458999999887655556789999998 58999998875
No 125
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.34 E-value=13 Score=28.25 Aligned_cols=39 Identities=26% Similarity=0.705 Sum_probs=30.9
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+.|+.|.+.+.......-+..||.+| ..|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKEC------------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTT------------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccceEEECccccCCCC------------CccCCCCCcCCc
Confidence 457999999887655456788999988 589999998853
No 126
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=43.92 E-value=5.6 Score=32.69 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=32.6
Q ss_pred cCCCCCccccccc--cccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 333 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 333 ~~~~~C~IC~e~~--~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
+.+..|.||.+.- .....+ .|.-.||..|+..-. -..+...||.|+...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 3567899999764 222233 688899999996532 122357899997654
No 127
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=43.55 E-value=17 Score=37.55 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=33.2
Q ss_pred CCCcccccccccccc-cccCCc--chHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 336 DECAICREPMAKAKK-LLCNHL--FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~-lpC~H~--Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..||+-...+..|.+ ..|.|. |-..-.....++. ....||+|.+.+...
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCCGG
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccCHH
Confidence 479999999988765 589998 4333333332332 258999999987653
No 128
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=43.52 E-value=19 Score=30.70 Aligned_cols=43 Identities=21% Similarity=0.456 Sum_probs=28.2
Q ss_pred CCCCcccccccc-----cc-cc---cccCCcchHHHHHH------HHHhCCCCCCCCcCcC
Q 007840 335 DDECAICREPMA-----KA-KK---LLCNHLFHLACLRS------WLDQGLNEMYSCPTCR 380 (587)
Q Consensus 335 ~~~C~IC~e~~~-----~~-~~---lpC~H~Fh~~Cl~~------wl~~~~~~~~~CP~CR 380 (587)
...|.+|...-. .+ .. -.|+..||..|+.. -+.+. .-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 468999987531 12 12 27999999999952 22232 57788886
No 129
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.41 E-value=9.9 Score=30.69 Aligned_cols=39 Identities=15% Similarity=0.434 Sum_probs=31.8
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+.|-+.+.......-+..||.+| ..|-.|++++..
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT------------CBCSSSCCBCSS
T ss_pred CCCCccCCCEecceEEEECCccccccC------------CccCCCCCCCCC
Confidence 467999999886555557789999998 689999998864
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.49 E-value=14 Score=28.10 Aligned_cols=39 Identities=26% Similarity=0.630 Sum_probs=30.5
Q ss_pred CCCCcccccccccc--cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+.|+.|-+.+... ....-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC------------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT------------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc------------CeECCCCCcCCC
Confidence 45899999998743 3345788999988 589999988764
No 131
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.17 E-value=13 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
...|..|-+.+.......-+..||.+| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC------------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT------------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC------------CEeCCCCCcCCCC
Confidence 457999999887544456788999988 5899999887653
No 132
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=41.03 E-value=12 Score=28.16 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=30.5
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+.|-+.+.......-|..||.+| ..|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999887544446788999988 589999988754
No 133
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.77 E-value=3.3 Score=31.44 Aligned_cols=42 Identities=26% Similarity=0.732 Sum_probs=27.5
Q ss_pred CCCcccccccccccccc-----cC-CcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 336 DECAICREPMAKAKKLL-----CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~lp-----C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
.-| ||...-. ...+- |. .-||..|+. +.....+...||.|+.
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 356 8987643 33443 55 579999997 4443335688999964
No 134
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.62 E-value=16 Score=29.28 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|..|.+.+.......-+..||.+| ..|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC------------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT------------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecccEEEECCceECccC------------CEecCCCCCCCC
Confidence 457999999887654456788999998 589999998864
No 135
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.07 E-value=12 Score=29.05 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=30.5
Q ss_pred CCCCcccccccccc-cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+.|+.|-+.+... ....-+..||.+| ..|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC------------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT------------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC------------CCCCCCCCccCC
Confidence 45899999988743 3345788999988 689999998864
No 136
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.76 E-value=18 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+.|-+.+.+.....-+..||.+| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPEC------------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTS------------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCceEEEECCceecccc------------CCccCCCCccCC
Confidence 457999999888555456788999988 689999998854
No 137
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.55 E-value=17 Score=28.03 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|+-|-..+.......-+..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSC------------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTT------------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCc------------CEeCCCCCCCC
Confidence 457999999887655556788999988 58999999886
No 138
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.08 E-value=14 Score=27.95 Aligned_cols=39 Identities=23% Similarity=0.591 Sum_probs=30.2
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
.+.|+-|-+.+.......-+..||.+| ..|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADC------------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTT------------TBCTTTCCBCTT
T ss_pred cCCCcccCCEeCcceEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999886544446788899988 589999998853
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.07 E-value=7.6 Score=33.34 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=27.7
Q ss_pred CCCccccccccc------ccc----cccCCcchHHHHHHH------HHhCCCCCCCCcCcC
Q 007840 336 DECAICREPMAK------AKK----LLCNHLFHLACLRSW------LDQGLNEMYSCPTCR 380 (587)
Q Consensus 336 ~~C~IC~e~~~~------~~~----lpC~H~Fh~~Cl~~w------l~~~~~~~~~CP~CR 380 (587)
+.|.+|+..-.. +.. -.|+..||..|+... +... .-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY---KWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT---TCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC---ccCccccC
Confidence 579999876421 112 279999999998643 2232 46788874
No 140
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=38.34 E-value=8.5 Score=30.26 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=31.0
Q ss_pred CCCCCccccccc--cccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~--~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.+..|.||.+.- .+...+ .|.-.||..|+..-. -..+...||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcCc
Confidence 456899998764 222333 688999999986432 12235789999653
No 141
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.22 E-value=1.9 Score=37.20 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=32.0
Q ss_pred CCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
.|.||...-.....+ .|...||..|+.+-+.....+...||.|+...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588887754444444 68899999999865554333456799997654
No 142
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.09 E-value=16 Score=31.08 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=18.1
Q ss_pred cccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccc
Q 007840 347 KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 347 ~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l 383 (587)
+++...||+.|. ........||.|+..-
T Consensus 67 p~~C~~CG~~F~---------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVFK---------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBCC---------CCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCeec---------ccCCCCCCCcCCCCCc
Confidence 345567999981 1112247899998764
No 143
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.00 E-value=17 Score=28.52 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=31.4
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+-|-+.+.......-|..||.+| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH------------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT------------SBCSSSCCBCCT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC------------CEeCCCCCccCC
Confidence 468999999887554456788999988 689999998864
No 144
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.79 E-value=18 Score=28.03 Aligned_cols=38 Identities=21% Similarity=0.662 Sum_probs=30.2
Q ss_pred CCCCccccccccc----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
.+.|+.|-+.+.. .....-+..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC------------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG------------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc------------CChhhCCCcCC
Confidence 4589999998874 33446788999999 58999998875
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.61 E-value=15 Score=28.07 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=29.7
Q ss_pred CCCCccccccccc----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|+-|-+.+.. .....-+..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC------------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT------------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc------------CEeccCCCcCC
Confidence 4579999998874 23335789999988 58999998875
No 146
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=37.00 E-value=5.4 Score=33.04 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=26.8
Q ss_pred CCCCCccccccccccccc---c--cC-CcchHHHHHHHHHhCCCCCCCCcC-cCc
Q 007840 334 YDDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPT-CRK 381 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~-CR~ 381 (587)
...-| ||...... ..+ . |. .-||..|+. +.........||. |+.
T Consensus 25 ~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34457 99875332 233 3 33 679999985 3332233688999 974
No 147
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.00 E-value=18 Score=28.42 Aligned_cols=39 Identities=21% Similarity=0.547 Sum_probs=30.6
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+.|-+.+.......-+..||.+| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC------------FVCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------SSCSSSCCCCCS
T ss_pred CCcCccccCEeccceEEECCceeCccC------------CccccCCCCCCC
Confidence 458999999887544446788999988 589999998764
No 148
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.72 E-value=6.5 Score=32.90 Aligned_cols=43 Identities=21% Similarity=0.573 Sum_probs=29.1
Q ss_pred CCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
.| ||.........+ .|.--||..|+..-... .+....||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcC
Confidence 47 787766555444 58899999998643222 234579999974
No 149
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.33 E-value=17 Score=28.19 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=27.5
Q ss_pred CCcccccccccc-cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 337 ECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 337 ~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.|+.|-+.+... ....-|..||..| ..|..|+.++...
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPC------------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTT------------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEECCccccCCC------------CCccccCccCCCC
Confidence 588888887633 3334588899888 5899998887653
No 150
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.74 E-value=18 Score=28.29 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCCCcccccccccccc----cccCCcchHHHH
Q 007840 335 DDECAICREPMAKAKK----LLCNHLFHLACL 362 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl 362 (587)
+..|.+|...|.--.+ -.||++||..|.
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CCcccCCCCccCCccccccCCCCCEEEccccc
Confidence 3589999999875432 379999999995
No 151
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.36 E-value=24 Score=27.44 Aligned_cols=38 Identities=24% Similarity=0.654 Sum_probs=30.2
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|+.|-+.+.......-+..||..| ..|-.|++++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHREC------------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhh------------CCcccCCCcCC
Confidence 457999998887654456788999988 58999999885
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.15 E-value=21 Score=27.18 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=30.6
Q ss_pred CCCCcccccccccc--cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
...|+.|-+.+... ....-+..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETC------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTT------------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccC------------CcccccCCccCCC
Confidence 45899999988753 3345788999988 5899999887643
No 153
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.06 E-value=21 Score=27.97 Aligned_cols=40 Identities=23% Similarity=0.591 Sum_probs=30.9
Q ss_pred CCCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
....|+-|-+.+.+.....-+..||.+| ..|..|++++..
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGC------------FTCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTT------------CBCSSSCCBCTT
T ss_pred CCCccccCCCeecceeEEECCccccHHh------------cCcccCCCccCC
Confidence 3457999998887554446788999988 689999988753
No 154
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=31.98 E-value=11 Score=32.02 Aligned_cols=48 Identities=23% Similarity=0.577 Sum_probs=30.5
Q ss_pred CCCcccccccccc-ccc----ccCCcchHHHHHHH------HHhCCCCCCCCcCcCccc
Q 007840 336 DECAICREPMAKA-KKL----LCNHLFHLACLRSW------LDQGLNEMYSCPTCRKPL 383 (587)
Q Consensus 336 ~~C~IC~e~~~~~-~~l----pC~H~Fh~~Cl~~w------l~~~~~~~~~CP~CR~~l 383 (587)
..|.||..++.+. ..+ .|..-||..|+.-= +.........||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4699999987443 222 57888999998311 110111257899998754
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.50 E-value=27 Score=27.31 Aligned_cols=40 Identities=18% Similarity=0.595 Sum_probs=30.5
Q ss_pred CCCCcccccccccc--cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
...|+.|-+.+... ....-+..||.+| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC------------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT------------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEECcccccccc------------CchhhCCCccCCC
Confidence 45899999988743 3345688999988 5899999888643
No 156
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.23 E-value=17 Score=29.21 Aligned_cols=28 Identities=21% Similarity=0.680 Sum_probs=22.0
Q ss_pred CCCcccccccccccc----cccCCcchHHHHH
Q 007840 336 DECAICREPMAKAKK----LLCNHLFHLACLR 363 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~ 363 (587)
..|.+|...|.-..+ -.||.+||..|..
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 479999999875432 3799999999963
No 157
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.02 E-value=31 Score=27.23 Aligned_cols=41 Identities=34% Similarity=0.800 Sum_probs=30.8
Q ss_pred CCCCCccccccccccc-ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 334 YDDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
..+.|+.|-+.+.... ...-+..||..| ..|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC------------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc------------CEEcCCCCCcCCC
Confidence 3468999999885443 335678999999 5899999887643
No 158
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=30.98 E-value=9.7 Score=34.91 Aligned_cols=47 Identities=28% Similarity=0.711 Sum_probs=29.9
Q ss_pred CCCCccccccccccc-cc---ccCCcchHHHHHHHHH-hCCCCCCCCcCcCcc
Q 007840 335 DDECAICREPMAKAK-KL---LCNHLFHLACLRSWLD-QGLNEMYSCPTCRKP 382 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~-~l---pC~H~Fh~~Cl~~wl~-~~~~~~~~CP~CR~~ 382 (587)
+..| +|....++.. .+ .|...||..|+.--.. ........||.|+..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3468 9988764322 22 6888999999842111 112236899999864
No 159
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.60 E-value=26 Score=26.62 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=29.5
Q ss_pred CCCCcccccccccc--cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|+.|-+.+... ....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC------------CcccccCCcCC
Confidence 45799999987642 3346688999988 58999999884
No 160
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.56 E-value=22 Score=27.66 Aligned_cols=39 Identities=18% Similarity=0.562 Sum_probs=30.5
Q ss_pred CCCCcccccccccccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+.|-+.+.......-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPEC------------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTT------------CBCSSSCCBSCS
T ss_pred CCccccCCCeecceeEEECCCeEecCc------------CChhhCCCCCCC
Confidence 357999998887644446778899988 589999998865
No 161
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.92 E-value=1.2e+02 Score=23.73 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=30.5
Q ss_pred HhHHHHHHHHhhhCCCCchHHHHHHhhccCC-hhHHHHhhhc
Q 007840 546 ANILAMAETVREVLPHMPEDLIFQDLQRTNS-ATITVNNLLQ 586 (587)
Q Consensus 546 ~~~~~m~~~v~~~~p~~p~~~~~~~l~~~~~-~~~t~~~~~~ 586 (587)
...+...+++.+| -.+.+.+.+=|++++. ++.-++-||+
T Consensus 27 ~~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 27 AASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4446667888888 5889999998999854 8888887774
No 162
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.69 E-value=6.5 Score=34.33 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=29.9
Q ss_pred CCCcccccccccccc----cccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 336 DECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
..|..|...|...++ -.||.+||..|....... ...|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHHH
Confidence 479999999875432 489999999997554432 4678888654
No 163
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.58 E-value=20 Score=29.97 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=11.0
Q ss_pred chHHHHHHHHHh
Q 007840 357 FHLACLRSWLDQ 368 (587)
Q Consensus 357 Fh~~Cl~~wl~~ 368 (587)
||+.||..|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999975
No 164
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.52 E-value=20 Score=30.01 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=11.0
Q ss_pred chHHHHHHHHHh
Q 007840 357 FHLACLRSWLDQ 368 (587)
Q Consensus 357 Fh~~Cl~~wl~~ 368 (587)
||+.||..|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999976
No 165
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.33 E-value=25 Score=27.09 Aligned_cols=40 Identities=28% Similarity=0.619 Sum_probs=30.4
Q ss_pred CCCCcccccccccc-c-ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA-K-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~-~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
...|+-|.+.+... . ...-|..||..| ..|-.|++++...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT------------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc------------CeECCCCCCCCCC
Confidence 46899999998632 2 236788999988 5899999887653
No 166
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.63 E-value=4.8 Score=34.54 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=32.1
Q ss_pred HhhhccCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCccCCCCCCCccc
Q 007840 406 ARQLSMGLDRQNNTG-QTL-PTGVFPNQTQPPVEGSPWRNAGLDSSWLH 452 (587)
Q Consensus 406 ~~~~~~g~~~~~~~~-h~~-~~~~~p~~~~~~~~~~~w~~aG~~~s~~~ 452 (587)
++..++|++..+|+. |+. +.|.....+ +++++|.|+. +.+++
T Consensus 42 CG~vgCgr~~~~HA~~H~~~t~H~~~~~l---~~~~vwCy~c--d~~V~ 85 (109)
T 3c5k_A 42 CYQVYCGRYINGHMLQHHGNSGHPLVLSY---IDLSAWCYYC--QAYVH 85 (109)
T ss_dssp TCCEEECTTTTCHHHHHHHHHCCCEEEET---TTCCEEETTT--TEEBC
T ss_pred cCccccCCCcChHHHHHhcccCCCEEEEC---CCCCEEECCC--CCEEe
Confidence 777888988887776 666 777777776 4568999998 77765
No 167
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=27.18 E-value=20 Score=30.95 Aligned_cols=37 Identities=24% Similarity=0.557 Sum_probs=30.2
Q ss_pred CCCccccccccccc-ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 336 DECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 336 ~~C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
..|+-|-+.+.... ...-+..||..| ..|-.|+.++.
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTT------------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccc------------cCcCcCCCccc
Confidence 57999999887653 446788999999 58999999885
No 168
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.74 E-value=26 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=22.9
Q ss_pred CCCCcccccccccccc----cccCCcchHHHHHH
Q 007840 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~ 364 (587)
...|.+|...|..-.+ -.||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 3579999999875422 47999999999643
No 169
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=26.65 E-value=7.2 Score=28.54 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=26.0
Q ss_pred CCccccccccccc-cc----ccCCcchHHHHHHHHHhCCCCCCCCcCcC
Q 007840 337 ECAICREPMAKAK-KL----LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (587)
Q Consensus 337 ~C~IC~e~~~~~~-~l----pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (587)
.|.+|..+..+.. .+ .|.--||..|+.--.....+....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988875432 22 47778999997421110000268899986
No 170
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.58 E-value=25 Score=28.31 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=22.5
Q ss_pred CCCCcccccccccccc----cccCCcchHHHHH
Q 007840 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~ 363 (587)
...|.+|...|..-.+ -.||++||..|..
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 3479999999875432 3799999999963
No 171
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.56 E-value=20 Score=34.30 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=21.8
Q ss_pred CCCCccccccccccc----ccccCCcchHHHH
Q 007840 335 DDECAICREPMAKAK----KLLCNHLFHLACL 362 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpC~H~Fh~~Cl 362 (587)
+..|.+|...|.--. .-.||++||..|.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 468999999987432 2379999999885
No 172
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.98 E-value=1.2e+02 Score=27.25 Aligned_cols=46 Identities=20% Similarity=0.471 Sum_probs=29.3
Q ss_pred CCCCCcccccccccc-----cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~-----~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.+..|++|..+|.-. ....|.|.+|..|- .|... .....|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~--~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPE--EQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSS--SSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCC--CCcEeeHHHHHH
Confidence 356899999987421 23478899998885 23222 123567777654
No 173
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.96 E-value=31 Score=29.54 Aligned_cols=38 Identities=26% Similarity=0.721 Sum_probs=29.2
Q ss_pred CCCcccccccccc--cccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 336 DECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 336 ~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
+.|+.|-..+... ....-+..||..| ..|-.|.+.+..
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLEC------------FKCAACQKHFSV 48 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTT------------CBCTTTCCBCCT
T ss_pred CcccCCCCeecCCceEEEECCccccccc------------CccccCCCCCCC
Confidence 3799999988742 2335688999998 689999998843
No 174
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=29 Score=26.77 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=29.8
Q ss_pred CCCCccccccccc-----ccccccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMAK-----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~~-----~~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+-|-+.+.. .....=+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTT------------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCccc------------CEehhcCCCCCC
Confidence 4579999998874 33345678899988 589999988853
No 175
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.52 E-value=23 Score=28.94 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCCCcccccccccccc----cccCCcchHHHHH
Q 007840 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~ 363 (587)
...|.+|...|..-.+ -.||++||..|..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 3479999999875432 3799999999863
No 176
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.48 E-value=43 Score=26.07 Aligned_cols=39 Identities=26% Similarity=0.735 Sum_probs=29.4
Q ss_pred CCCCcccccccc-ccccc-ccCCcchHHHHHHHHHhCCCCCCCCcCcCccccc
Q 007840 335 DDECAICREPMA-KAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (587)
Q Consensus 335 ~~~C~IC~e~~~-~~~~l-pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~ 385 (587)
...|+.|-..+. +...+ .=+..||..| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGC------------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTT------------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEeCCccccccC------------CeecCCCCccCC
Confidence 457999999887 23333 4588999988 589999988763
No 177
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.35 E-value=22 Score=34.18 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=22.4
Q ss_pred CCCCccccccccccc----ccccCCcchHHHHH
Q 007840 335 DDECAICREPMAKAK----KLLCNHLFHLACLR 363 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpC~H~Fh~~Cl~ 363 (587)
++.|.+|...|.--. .-.||++||..|..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 468999999987542 24799999999853
No 178
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.93 E-value=30 Score=27.24 Aligned_cols=38 Identities=29% Similarity=0.735 Sum_probs=29.5
Q ss_pred CCCCccccccccccc-ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccc
Q 007840 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~ 384 (587)
...|+-|-+.+.... ...-+..||.+| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSC------------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTT------------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCccccccc------------CCcCcCCCCcC
Confidence 458999999886443 335678899988 68999998875
No 179
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=24.16 E-value=16 Score=38.24 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCccccccccccc----ccccCCcchHHHHHHHHHhCC---CCCCCCcCcCccc
Q 007840 335 DDECAICREPMAKAK----KLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPL 383 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpC~H~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~l 383 (587)
...|.+|...|.... .-.||++||..|......-.. .....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 357999999986432 348999999999865542210 0134566665433
No 180
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.11 E-value=27 Score=28.07 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=21.2
Q ss_pred CCCcccccccccccc----cccCCcchHHHH
Q 007840 336 DECAICREPMAKAKK----LLCNHLFHLACL 362 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl 362 (587)
..|.+|...|.--.+ -.||.+||..|.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 479999999865432 379999999884
No 181
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.86 E-value=40 Score=21.70 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=17.9
Q ss_pred CCCccccccccccccc-ccCCcchHHH
Q 007840 336 DECAICREPMAKAKKL-LCNHLFHLAC 361 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~C 361 (587)
+.|+.|-...-...++ .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 4688888776554444 4567888887
No 182
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.55 E-value=43 Score=26.79 Aligned_cols=40 Identities=25% Similarity=0.781 Sum_probs=30.9
Q ss_pred CCCCcccccccccc-cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+.|+-|-+.+... ....-+..||..| ..|-.|..++...
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISC------------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTT------------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEEECCCEECCCC------------CeeCCCCCCCCCC
Confidence 46899999988653 3346788999998 5899999887653
No 183
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.43 E-value=19 Score=28.27 Aligned_cols=40 Identities=28% Similarity=0.592 Sum_probs=30.0
Q ss_pred CCCCcccccccccc-cccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
.+.|+.|.+.+.+. ....-+..||.+| ..|-.|++++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCC------------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSS------------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEeCCccccccc------------CccCCCCCCCCCC
Confidence 45799999988543 3345788999988 5899999988543
No 184
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.39 E-value=32 Score=25.87 Aligned_cols=40 Identities=25% Similarity=0.602 Sum_probs=30.2
Q ss_pred CCCCccccccccccc--ccccCCcchHHHHHHHHHhCCCCCCCCcCcCcccccC
Q 007840 335 DDECAICREPMAKAK--KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~--~lpC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~l~~~ 386 (587)
...|+.|...+.... ...-|..||..| ..|-.|.+++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~C------------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTT------------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCC------------CcccCCCCCCCCC
Confidence 458999999887542 235778899988 5899999887643
No 185
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.05 E-value=9.6 Score=28.76 Aligned_cols=41 Identities=27% Similarity=0.741 Sum_probs=27.1
Q ss_pred CCccccccccccccc---c--cC-CcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 337 ECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 337 ~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
-| +|.+... ...+ . |. .-||..|+. +.....+...||.|+.
T Consensus 11 yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 56 8987643 3333 3 66 689999996 4443334678999965
No 186
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=22.43 E-value=10 Score=29.49 Aligned_cols=44 Identities=27% Similarity=0.749 Sum_probs=28.5
Q ss_pred CCCccccccccccccc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCc
Q 007840 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (587)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (587)
..| ||..+......+ .|..-||..|+.---. ..+....||.|+.
T Consensus 20 ~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred eEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 468 998776543233 5888999999853211 2234688999975
No 187
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.68 E-value=33 Score=26.60 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=22.1
Q ss_pred CCCCccccccccccccccc-CCcchHHHHHH
Q 007840 335 DDECAICREPMAKAKKLLC-NHLFHLACLRS 364 (587)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC-~H~Fh~~Cl~~ 364 (587)
.+-|.||.++ ..-+.+-| |-+||..|.++
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHH
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHH
Confidence 4579999998 34456788 78899888544
No 188
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.41 E-value=16 Score=37.13 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=27.3
Q ss_pred CCCCCccccccccccccc----ccC--CcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 334 YDDECAICREPMAKAKKL----LCN--HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l----pC~--H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
....||+|-..-...+.. .=| |..|.-|-..|-.. ...||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV----RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC----TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec----CcCCcCCCCC
Confidence 456899998765332111 112 34455566677555 5799999764
No 189
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.08 E-value=8.7 Score=30.07 Aligned_cols=45 Identities=20% Similarity=0.435 Sum_probs=28.8
Q ss_pred CCccccccccccc-cc---ccCCcchHHHHHHHHHhCCCCCCCCcCcCcc
Q 007840 337 ECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (587)
Q Consensus 337 ~C~IC~e~~~~~~-~l---pC~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (587)
.| ||.....+.. .+ .|..-||..|+.---....+....||.|+..
T Consensus 18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 58 6987754432 23 5888899999853211123346889999764
Done!