Query 007841
Match_columns 587
No_of_seqs 204 out of 824
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.2 0.18 6.2E-06 53.5 18.3 106 4-116 120-237 (511)
2 3gia_A Uncharacterized protein 96.0 0.039 1.3E-06 57.5 11.9 78 13-102 126-208 (444)
3 3l1l_A Arginine/agmatine antip 94.9 0.24 8.2E-06 51.5 13.2 82 13-102 126-211 (445)
4 2bm3_A Type 2 cohesin, scaffol 28.6 15 0.00053 34.5 0.7 12 59-70 44-55 (166)
5 3kcp_B Cellulosome anchoring p 28.0 16 0.00055 34.8 0.7 11 60-70 57-67 (187)
6 2l6p_A PHAC1, PHAC2 and PHAD g 26.8 24 0.00084 31.4 1.7 22 557-580 30-51 (124)
7 3luu_A Uncharacterized protein 22.4 27 0.00091 29.7 1.0 21 555-575 33-53 (101)
8 1nrp_R Receptor based peptide 21.3 31 0.0011 22.4 0.9 17 133-149 4-20 (26)
9 2l6n_A Uncharacterized protein 20.9 37 0.0013 30.6 1.7 16 556-571 36-51 (132)
10 2rdd_B UPF0092 membrane protei 19.8 1.6E+02 0.0055 20.7 4.5 33 292-324 1-33 (37)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.19 E-value=0.18 Score=53.51 Aligned_cols=106 Identities=21% Similarity=0.139 Sum_probs=57.7
Q ss_pred ccCCCCCe--ehhHHHHHHHHHHhhccccccccccchhhH----HHHHHHHHHHhhhhhhcccCccee----eecChHHH
Q 007841 4 QMDLFAGA--LVIVSIIILVALFSIQRFGTGKVGFMFAPV----LALWFFSLGSIGLYNLVKYDISVV----RAFNPIYI 73 (587)
Q Consensus 4 ~~~~~~~~--vv~is~~ILv~LF~~Q~~GT~kvg~~F~PI----m~~Wf~~i~~~Gi~ni~~~~p~Vl----~A~nP~y~ 73 (587)
.|+++.+. ...+++++++++..+--+|....+.+..-. +++-++.+.++|++.+...+|.-+ ..+.|.+
T Consensus 120 ~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 198 (511)
T 4djk_A 120 WPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF- 198 (511)
T ss_dssp CGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-
Confidence 45555332 456788888888899999988776654322 222344555667766554333211 1222211
Q ss_pred HHHHHhcCcchhhhcccchhhhcchhhhhhccCCCc--cccceeh
Q 007841 74 YLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFS--VKAIQIA 116 (587)
Q Consensus 74 ~~f~~~~~~~g~~~LG~v~L~iTG~EAlyADlGHF~--~~~I~~a 116 (587)
.+..+|..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 199 ------~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 199 ------SKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp ------TSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred ------ccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 123467777888999999998644333332 3444444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.01 E-value=0.039 Score=57.54 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhhcccccccccc---chhhHHHHHHHHHHHhhhhhhcccCcceeee-cChHHHHHHHHhcCcch-hhh
Q 007841 13 VIVSIIILVALFSIQRFGTGKVGF---MFAPVLALWFFSLGSIGLYNLVKYDISVVRA-FNPIYIYLFFKKNGKDA-WSA 87 (587)
Q Consensus 13 v~is~~ILv~LF~~Q~~GT~kvg~---~F~PIm~~Wf~~i~~~Gi~ni~~~~p~Vl~A-~nP~y~~~f~~~~~~~g-~~~ 87 (587)
..+++++++++..+.-+|+...++ .+..+.++=++.+.+.|+... +|+-+.. ++|. +..+ +..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~ 193 (444)
T 3gia_A 126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHH
Confidence 456778888888888889776554 445555554455555555543 4443222 2221 1112 233
Q ss_pred cccchhhhcchhhhh
Q 007841 88 LGGCVLCITGAEAMF 102 (587)
Q Consensus 88 LG~v~L~iTG~EAly 102 (587)
+...+.+.+|-|+.-
T Consensus 194 ~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 194 SAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 444568889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=94.93 E-value=0.24 Score=51.48 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhhccccccccccc---hhhHHHHHHHHHHHhhhhhhcccCccee-eecChHHHHHHHHhcCcchhhhc
Q 007841 13 VIVSIIILVALFSIQRFGTGKVGFM---FAPVLALWFFSLGSIGLYNLVKYDISVV-RAFNPIYIYLFFKKNGKDAWSAL 88 (587)
Q Consensus 13 v~is~~ILv~LF~~Q~~GT~kvg~~---F~PIm~~Wf~~i~~~Gi~ni~~~~p~Vl-~A~nP~y~~~f~~~~~~~g~~~L 88 (587)
..+++++++++..+--+|....+++ +.++.++=++.+.+.|+. ..+|+.+ ..++|.-.- ....-+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccccCccCCc-----cHHHHHHHH
Confidence 3466777777778888887776654 444444333333344443 3345543 334442100 011223345
Q ss_pred ccchhhhcchhhhh
Q 007841 89 GGCVLCITGAEAMF 102 (587)
Q Consensus 89 G~v~L~iTG~EAly 102 (587)
...+.+.+|-|+.-
T Consensus 198 ~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 198 NVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHTTTTTTHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 55677888988653
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=28.57 E-value=15 Score=34.46 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=7.3
Q ss_pred ccCcceeeecCh
Q 007841 59 KYDISVVRAFNP 70 (587)
Q Consensus 59 ~~~p~Vl~A~nP 70 (587)
+|||+||+|.||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 456666666665
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=27.96 E-value=16 Score=34.82 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=4.7
Q ss_pred cCcceeeecCh
Q 007841 60 YDISVVRAFNP 70 (587)
Q Consensus 60 ~~p~Vl~A~nP 70 (587)
|||+||+|+||
T Consensus 57 YDP~VLqaV~p 67 (187)
T 3kcp_B 57 YDPKVLMAVDP 67 (187)
T ss_dssp CCTTTEEEECT
T ss_pred EChhHeeeccc
Confidence 34444444444
No 6
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=26.83 E-value=24 Score=31.38 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.6
Q ss_pred HHHHhhhccCCCccccCCCCCeEE
Q 007841 557 YAFLRRNCRAGAANMSVPHMNILQ 580 (587)
Q Consensus 557 Y~FLRkNcR~~~~~L~IPh~~LlE 580 (587)
|.|||.||+++...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999866543 555543
No 7
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=22.45 E-value=27 Score=29.69 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=10.9
Q ss_pred HHHHHHhhhccCCCccccCCC
Q 007841 555 YFYAFLRRNCRAGAANMSVPH 575 (587)
Q Consensus 555 ~~Y~FLRkNcR~~~~~L~IPh 575 (587)
+=|.|||.||+.+...-.-+.
T Consensus 33 ~~~~wLRd~c~ca~c~~~~t~ 53 (101)
T 3luu_A 33 LTFEHLRVECPCAECKGHTPD 53 (101)
T ss_dssp EEHHHHHHTCCCC--------
T ss_pred ECHHHHHhhCCChhhcCccCC
Confidence 347899999997765544333
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=21.26 E-value=31 Score=22.41 Aligned_cols=17 Identities=18% Similarity=0.663 Sum_probs=14.7
Q ss_pred hhhhccCCCcccCcccc
Q 007841 133 AAYLMKYPDSANRIFYD 149 (587)
Q Consensus 133 ~A~l~~~p~~~~npFf~ 149 (587)
-+||++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 9
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=20.92 E-value=37 Score=30.65 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=12.6
Q ss_pred HHHHHhhhccCCCccc
Q 007841 556 FYAFLRRNCRAGAANM 571 (587)
Q Consensus 556 ~Y~FLRkNcR~~~~~L 571 (587)
=|.|||.||+.+...-
T Consensus 36 ~~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 36 SCELLRVYSPSAEVHG 51 (132)
T ss_dssp EHHHHHHSCSCSSSSS
T ss_pred CHHHHHhcCCCcccCC
Confidence 3689999999876553
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=19.80 E-value=1.6e+02 Score=20.65 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHHHhhHhHHHHHHHHHhc
Q 007841 292 GGWLPLAFASVFLCVMYIWNYGSVLKYRSEVRE 324 (587)
Q Consensus 292 GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~ 324 (587)
|||..++.-++++.+||..-.-..+|.+.+.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Done!