Query 007842
Match_columns 587
No_of_seqs 295 out of 2395
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 16:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 3.5E-52 7.6E-57 414.2 45.8 578 7-584 80-666 (759)
2 KOG2171 Karyopherin (importin) 100.0 1.5E-29 3.2E-34 254.5 52.2 574 12-586 82-918 (1075)
3 KOG0211 Protein phosphatase 2A 100.0 1.6E-31 3.6E-36 266.9 33.7 514 71-585 106-628 (759)
4 KOG2171 Karyopherin (importin) 100.0 7.4E-29 1.6E-33 249.5 52.1 543 9-560 4-613 (1075)
5 KOG2023 Nuclear transport rece 100.0 2.1E-29 4.5E-34 237.2 35.9 500 81-585 123-735 (885)
6 KOG0213 Splicing factor 3b, su 100.0 7.8E-25 1.7E-29 208.8 41.9 555 11-580 365-1063(1172)
7 KOG2023 Nuclear transport rece 100.0 3.9E-25 8.4E-30 208.6 34.4 565 12-583 93-776 (885)
8 KOG1241 Karyopherin (importin) 99.9 1.5E-23 3.3E-28 201.3 41.3 525 60-586 103-815 (859)
9 COG5181 HSH155 U2 snRNP splice 99.9 8.5E-23 1.8E-27 191.3 37.2 556 11-580 170-868 (975)
10 KOG1824 TATA-binding protein-i 99.9 8.9E-22 1.9E-26 193.0 43.5 570 13-586 9-684 (1233)
11 KOG0213 Splicing factor 3b, su 99.9 7.5E-21 1.6E-25 181.9 43.9 544 19-580 486-1140(1172)
12 PLN03200 cellulose synthase-in 99.9 3.1E-21 6.7E-26 210.3 46.8 561 10-583 190-812 (2102)
13 PLN03200 cellulose synthase-in 99.9 6E-21 1.3E-25 208.1 48.8 563 10-583 100-765 (2102)
14 KOG1241 Karyopherin (importin) 99.9 5.9E-20 1.3E-24 176.9 46.3 566 13-586 5-672 (859)
15 PF01602 Adaptin_N: Adaptin N 99.9 2.9E-20 6.3E-25 191.4 41.0 503 14-582 9-524 (526)
16 KOG1242 Protein containing ada 99.9 1.1E-19 2.4E-24 173.0 37.0 518 50-576 19-558 (569)
17 KOG1824 TATA-binding protein-i 99.9 5.3E-19 1.1E-23 173.8 42.4 575 5-582 42-722 (1233)
18 KOG1242 Protein containing ada 99.9 4.3E-19 9.4E-24 169.0 36.2 512 19-537 27-558 (569)
19 COG5181 HSH155 U2 snRNP splice 99.9 1.6E-18 3.6E-23 162.9 39.1 548 18-586 290-916 (975)
20 PRK09687 putative lyase; Provi 99.9 4.3E-20 9.3E-25 168.5 22.9 255 280-579 23-279 (280)
21 PRK13800 putative oxidoreducta 99.9 9.9E-20 2.1E-24 194.9 27.1 275 242-579 622-896 (897)
22 PTZ00429 beta-adaptin; Provisi 99.9 1.5E-16 3.3E-21 162.3 48.0 499 10-577 33-541 (746)
23 COG5215 KAP95 Karyopherin (imp 99.8 8.3E-16 1.8E-20 143.8 46.2 508 14-522 99-731 (858)
24 PF01602 Adaptin_N: Adaptin N 99.8 5.2E-18 1.1E-22 174.7 34.2 470 9-502 42-522 (526)
25 PRK09687 putative lyase; Provi 99.8 8.1E-19 1.8E-23 160.2 23.4 255 241-540 23-279 (280)
26 COG5215 KAP95 Karyopherin (imp 99.8 1.1E-15 2.5E-20 142.9 43.9 567 13-586 8-672 (858)
27 PRK13800 putative oxidoreducta 99.8 2.5E-18 5.4E-23 184.2 27.5 274 203-539 622-895 (897)
28 KOG0212 Uncharacterized conser 99.8 1.8E-16 3.9E-21 148.0 29.6 379 168-547 5-410 (675)
29 KOG1240 Protein kinase contain 99.8 5E-17 1.1E-21 164.2 24.8 309 126-446 423-745 (1431)
30 KOG0915 Uncharacterized conser 99.8 1.6E-14 3.5E-19 149.7 39.0 499 84-586 816-1431(1702)
31 PTZ00429 beta-adaptin; Provisi 99.8 1.3E-13 2.8E-18 141.1 44.9 476 1-504 60-546 (746)
32 KOG1240 Protein kinase contain 99.8 1.2E-16 2.6E-21 161.6 21.8 300 215-524 436-745 (1431)
33 KOG0212 Uncharacterized conser 99.7 3.8E-14 8.2E-19 132.8 35.7 443 94-541 8-478 (675)
34 KOG0166 Karyopherin (importin) 99.7 1.8E-13 4E-18 130.3 29.1 343 239-586 107-487 (514)
35 KOG0915 Uncharacterized conser 99.7 1.7E-11 3.6E-16 128.0 45.1 529 11-546 820-1430(1702)
36 KOG1060 Vesicle coat complex A 99.6 7.6E-12 1.6E-16 122.1 36.8 488 11-574 37-563 (968)
37 KOG1943 Beta-tubulin folding c 99.6 2.8E-10 6.1E-15 115.5 47.4 424 159-585 337-840 (1133)
38 KOG0166 Karyopherin (importin) 99.6 6.3E-13 1.4E-17 126.8 25.2 330 252-583 77-437 (514)
39 KOG1060 Vesicle coat complex A 99.5 2.8E-11 6.1E-16 118.2 31.1 133 437-575 393-526 (968)
40 KOG4224 Armadillo repeat prote 99.5 1.5E-12 3.3E-17 115.7 19.2 383 162-545 84-495 (550)
41 PF10508 Proteasom_PSMB: Prote 99.5 1.1E-10 2.3E-15 117.1 34.8 370 211-581 47-461 (503)
42 PF10508 Proteasom_PSMB: Prote 99.5 6.7E-10 1.5E-14 111.5 37.7 389 130-542 43-461 (503)
43 KOG1061 Vesicle coat complex A 99.5 1.2E-10 2.7E-15 114.5 30.5 437 122-574 47-520 (734)
44 KOG4224 Armadillo repeat prote 99.5 5.9E-12 1.3E-16 112.0 19.4 375 206-581 89-492 (550)
45 COG5240 SEC21 Vesicle coat com 99.4 1.7E-09 3.7E-14 102.4 33.8 468 84-581 63-554 (898)
46 KOG1943 Beta-tubulin folding c 99.4 1.1E-08 2.4E-13 104.2 39.1 490 86-583 341-882 (1133)
47 COG1413 FOG: HEAT repeat [Ener 99.4 4.6E-10 9.9E-15 108.2 25.1 278 241-580 43-333 (335)
48 KOG1062 Vesicle coat complex A 99.3 1.1E-08 2.5E-13 100.9 33.9 434 125-575 103-574 (866)
49 COG5064 SRP1 Karyopherin (impo 99.3 3.3E-10 7.2E-15 100.2 20.1 340 242-586 115-497 (526)
50 COG5240 SEC21 Vesicle coat com 99.3 2.3E-08 5E-13 94.9 32.5 471 12-503 68-554 (898)
51 PF12348 CLASP_N: CLASP N term 99.3 2.3E-10 5E-15 103.5 19.2 186 397-585 7-209 (228)
52 COG1413 FOG: HEAT repeat [Ener 99.3 2.8E-09 6E-14 102.8 27.1 186 163-386 43-241 (335)
53 KOG1243 Protein kinase [Genera 99.3 7.9E-11 1.7E-15 114.8 15.9 253 330-584 265-517 (690)
54 KOG1061 Vesicle coat complex A 99.3 4E-09 8.6E-14 104.1 27.5 517 7-545 11-570 (734)
55 KOG2259 Uncharacterized conser 99.3 1.3E-09 2.8E-14 104.8 23.4 278 251-541 168-473 (823)
56 KOG1248 Uncharacterized conser 99.3 4.1E-06 8.9E-11 87.1 51.2 520 58-585 323-901 (1176)
57 TIGR02270 conserved hypothetic 99.3 1.4E-09 3.1E-14 104.4 22.9 207 321-580 88-294 (410)
58 KOG1020 Sister chromatid cohes 99.3 2.8E-07 6.1E-12 97.4 40.8 487 92-582 822-1405(1692)
59 KOG1059 Vesicle coat complex A 99.2 8.6E-07 1.9E-11 86.8 39.6 407 126-582 145-577 (877)
60 KOG1062 Vesicle coat complex A 99.2 5.4E-07 1.2E-11 89.5 37.8 410 160-585 104-547 (866)
61 COG5064 SRP1 Karyopherin (impo 99.2 8.2E-10 1.8E-14 97.8 14.9 300 283-582 74-398 (526)
62 KOG1020 Sister chromatid cohes 99.2 4E-06 8.7E-11 89.0 43.7 519 7-547 813-1409(1692)
63 KOG1078 Vesicle coat complex C 99.2 1.7E-07 3.7E-12 92.6 31.7 465 84-581 62-531 (865)
64 KOG2259 Uncharacterized conser 99.2 3E-08 6.5E-13 95.7 25.3 318 217-546 173-514 (823)
65 TIGR02270 conserved hypothetic 99.2 1.1E-08 2.3E-13 98.5 22.4 240 243-543 56-296 (410)
66 KOG1248 Uncharacterized conser 99.1 5.8E-06 1.3E-10 86.1 42.6 226 328-553 663-908 (1176)
67 KOG1059 Vesicle coat complex A 99.1 3.3E-07 7.2E-12 89.6 30.7 324 11-347 38-400 (877)
68 KOG1991 Nuclear transport rece 99.1 2.1E-05 4.5E-10 80.5 46.2 376 158-535 84-568 (1010)
69 KOG1058 Vesicle coat complex C 99.1 1.1E-06 2.3E-11 86.6 31.9 331 158-506 129-465 (948)
70 PF12348 CLASP_N: CLASP N term 99.1 1.3E-08 2.9E-13 92.0 17.9 187 281-470 8-211 (228)
71 KOG1078 Vesicle coat complex C 99.1 2.2E-06 4.9E-11 85.0 33.8 456 58-542 75-531 (865)
72 COG5096 Vesicle coat complex, 99.1 7.8E-06 1.7E-10 83.1 38.5 496 18-579 28-558 (757)
73 KOG1243 Protein kinase [Genera 99.0 5.3E-09 1.1E-13 102.3 15.5 255 289-545 263-517 (690)
74 KOG1077 Vesicle coat complex A 99.0 1.4E-05 3E-10 78.4 38.0 281 60-349 123-434 (938)
75 PF12460 MMS19_C: RNAPII trans 99.0 7.2E-06 1.6E-10 80.9 34.4 305 254-561 56-414 (415)
76 KOG1820 Microtubule-associated 99.0 8.5E-08 1.8E-12 98.7 20.8 357 204-586 65-447 (815)
77 KOG1992 Nuclear export recepto 98.9 7.4E-05 1.6E-09 75.0 39.4 508 22-546 52-671 (960)
78 COG5096 Vesicle coat complex, 98.9 3.1E-05 6.7E-10 78.9 37.7 142 162-310 54-196 (757)
79 KOG2274 Predicted importin 9 [ 98.9 0.00013 2.7E-09 74.2 39.1 564 10-582 5-689 (1005)
80 KOG1058 Vesicle coat complex C 98.9 5.4E-05 1.2E-09 75.1 34.6 314 209-546 106-428 (948)
81 KOG1992 Nuclear export recepto 98.9 3.3E-05 7.1E-10 77.4 33.3 447 97-584 16-529 (960)
82 KOG1077 Vesicle coat complex A 98.8 4.3E-05 9.3E-10 75.1 33.3 450 84-578 109-583 (938)
83 KOG1820 Microtubule-associated 98.8 1.1E-06 2.4E-11 90.7 23.9 329 160-510 95-449 (815)
84 KOG2062 26S proteasome regulat 98.8 9.8E-05 2.1E-09 73.2 35.5 170 396-578 518-692 (929)
85 KOG2137 Protein kinase [Signal 98.8 7.4E-07 1.6E-11 88.1 20.0 236 331-569 285-524 (700)
86 PF05804 KAP: Kinesin-associat 98.8 0.00013 2.9E-09 74.9 36.9 367 167-544 254-650 (708)
87 PF12755 Vac14_Fab1_bd: Vacuol 98.8 9.6E-08 2.1E-12 71.2 10.5 84 491-574 2-89 (97)
88 KOG1991 Nuclear transport rece 98.7 0.0005 1.1E-08 70.9 44.5 307 158-468 122-535 (1010)
89 KOG1293 Proteins containing ar 98.7 9.3E-05 2E-09 72.5 31.8 416 160-580 48-531 (678)
90 PF05804 KAP: Kinesin-associat 98.7 5.9E-05 1.3E-09 77.5 32.0 372 205-583 253-650 (708)
91 PF12460 MMS19_C: RNAPII trans 98.7 3E-05 6.4E-10 76.6 29.3 289 99-389 56-396 (415)
92 KOG4535 HEAT and armadillo rep 98.7 1.9E-05 4.2E-10 74.0 25.3 465 95-582 56-603 (728)
93 KOG1293 Proteins containing ar 98.7 0.00029 6.3E-09 69.2 34.2 137 408-544 388-534 (678)
94 PF13646 HEAT_2: HEAT repeats; 98.7 1E-07 2.2E-12 71.5 8.5 86 477-578 1-88 (88)
95 KOG0414 Chromosome condensatio 98.6 0.0011 2.4E-08 69.6 42.7 146 429-580 912-1062(1251)
96 KOG4535 HEAT and armadillo rep 98.6 5.6E-05 1.2E-09 71.1 26.0 291 216-508 269-607 (728)
97 KOG0413 Uncharacterized conser 98.6 0.00011 2.4E-09 74.8 28.9 127 450-582 945-1073(1529)
98 KOG0567 HEAT repeat-containing 98.6 1.1E-05 2.5E-10 69.8 19.0 226 321-582 38-280 (289)
99 PF12755 Vac14_Fab1_bd: Vacuol 98.6 6.3E-07 1.4E-11 66.9 9.5 82 297-378 3-88 (97)
100 KOG2032 Uncharacterized conser 98.5 0.00023 4.9E-09 67.6 27.4 255 318-581 257-530 (533)
101 KOG2062 26S proteasome regulat 98.5 9.3E-06 2E-10 80.1 19.1 226 96-346 424-651 (929)
102 KOG2137 Protein kinase [Signal 98.5 9.5E-06 2.1E-10 80.5 17.9 232 293-527 286-521 (700)
103 PF05918 API5: Apoptosis inhib 98.5 7.2E-05 1.6E-09 73.9 23.7 260 139-406 36-315 (556)
104 PF13646 HEAT_2: HEAT repeats; 98.5 2.1E-06 4.5E-11 64.3 10.4 85 322-422 2-88 (88)
105 KOG0413 Uncharacterized conser 98.5 0.0011 2.4E-08 68.0 31.2 458 56-520 481-1089(1529)
106 PF04826 Arm_2: Armadillo-like 98.5 3E-05 6.4E-10 69.7 18.7 189 282-470 14-210 (254)
107 cd00020 ARM Armadillo/beta-cat 98.4 1.1E-06 2.5E-11 70.4 8.9 107 475-581 7-119 (120)
108 PF04826 Arm_2: Armadillo-like 98.4 2.2E-05 4.8E-10 70.5 17.7 180 252-431 24-210 (254)
109 KOG4413 26S proteasome regulat 98.4 0.00031 6.6E-09 62.9 24.0 318 222-544 63-440 (524)
110 PF12717 Cnd1: non-SMC mitotic 98.4 3.3E-05 7.3E-10 66.2 17.3 92 411-505 2-93 (178)
111 PF12717 Cnd1: non-SMC mitotic 98.4 4.6E-05 9.9E-10 65.4 17.7 109 216-327 2-110 (178)
112 KOG2032 Uncharacterized conser 98.4 0.00039 8.5E-09 66.0 24.7 249 206-464 262-530 (533)
113 cd00020 ARM Armadillo/beta-cat 98.4 3.1E-06 6.8E-11 67.8 9.9 106 437-542 8-119 (120)
114 KOG1822 Uncharacterized conser 98.4 0.0066 1.4E-07 67.3 36.3 285 101-387 799-1127(2067)
115 KOG2025 Chromosome condensatio 98.3 0.00025 5.4E-09 70.1 23.2 161 285-460 90-254 (892)
116 KOG2025 Chromosome condensatio 98.3 0.00026 5.7E-09 70.0 23.3 206 159-384 81-291 (892)
117 KOG4653 Uncharacterized conser 98.3 0.00011 2.4E-09 74.2 21.1 178 325-508 733-922 (982)
118 KOG0567 HEAT repeat-containing 98.3 0.00025 5.5E-09 61.6 19.8 191 203-425 68-279 (289)
119 PF13001 Ecm29: Proteasome sta 98.3 0.00063 1.4E-08 68.7 25.9 407 160-578 20-484 (501)
120 PF05918 API5: Apoptosis inhib 98.3 0.0011 2.4E-08 65.8 26.3 270 166-445 26-315 (556)
121 KOG4413 26S proteasome regulat 98.3 0.0029 6.3E-08 56.9 27.3 345 183-540 63-481 (524)
122 KOG0168 Putative ubiquitin fus 98.3 0.0024 5.2E-08 64.8 28.5 188 87-274 169-368 (1051)
123 COG5098 Chromosome condensatio 98.3 0.0066 1.4E-07 60.4 35.3 142 435-582 891-1037(1128)
124 KOG0168 Putative ubiquitin fus 98.3 0.0015 3.2E-08 66.3 26.6 188 163-350 168-366 (1051)
125 PF13001 Ecm29: Proteasome sta 98.2 0.0017 3.8E-08 65.6 27.5 406 88-507 26-491 (501)
126 KOG2274 Predicted importin 9 [ 98.2 0.012 2.6E-07 60.5 41.0 500 48-582 5-602 (1005)
127 PF05004 IFRD: Interferon-rela 98.1 0.0019 4.1E-08 60.6 23.9 202 364-565 49-285 (309)
128 KOG1967 DNA repair/transcripti 98.1 0.015 3.4E-07 59.9 33.1 149 394-542 864-1023(1030)
129 KOG4653 Uncharacterized conser 98.1 0.0004 8.7E-09 70.3 19.5 187 165-352 729-922 (982)
130 KOG2956 CLIP-associating prote 98.1 0.00067 1.5E-08 64.0 19.3 188 319-510 287-483 (516)
131 PF05004 IFRD: Interferon-rela 98.1 0.0013 2.8E-08 61.6 21.3 181 404-584 50-259 (309)
132 KOG1525 Sister chromatid cohes 98.1 0.0037 8.1E-08 68.3 27.2 326 93-427 57-406 (1266)
133 KOG2956 CLIP-associating prote 98.0 0.0017 3.7E-08 61.4 20.9 209 359-575 288-505 (516)
134 PF13513 HEAT_EZ: HEAT-like re 98.0 1.2E-05 2.7E-10 53.5 5.2 51 529-579 2-54 (55)
135 KOG1949 Uncharacterized conser 98.0 0.0095 2.1E-07 59.4 26.2 142 322-463 177-329 (1005)
136 KOG1949 Uncharacterized conser 98.0 0.0018 4E-08 64.2 21.2 148 239-386 172-330 (1005)
137 KOG0414 Chromosome condensatio 98.0 0.034 7.5E-07 59.1 35.5 150 389-544 911-1065(1251)
138 KOG1967 DNA repair/transcripti 98.0 0.00014 3E-09 74.0 14.0 147 121-267 863-1021(1030)
139 PF13513 HEAT_EZ: HEAT-like re 98.0 1.7E-05 3.7E-10 52.8 5.3 53 489-541 1-55 (55)
140 COG5116 RPN2 26S proteasome re 97.9 0.00048 1E-08 66.4 15.2 155 399-567 518-676 (926)
141 COG5218 YCG1 Chromosome conden 97.9 0.031 6.7E-07 54.7 32.2 169 11-192 93-266 (885)
142 PLN03076 ARF guanine nucleotid 97.9 0.017 3.7E-07 66.1 29.0 290 180-470 1109-1494(1780)
143 COG5116 RPN2 26S proteasome re 97.9 0.00064 1.4E-08 65.6 15.2 156 166-333 519-676 (926)
144 COG5218 YCG1 Chromosome conden 97.8 0.05 1.1E-06 53.4 30.4 172 199-384 88-263 (885)
145 KOG1525 Sister chromatid cohes 97.7 0.038 8.2E-07 60.9 28.0 145 435-582 258-405 (1266)
146 PF02985 HEAT: HEAT repeat; I 97.7 4.6E-05 9.9E-10 43.4 3.5 29 555-583 2-30 (31)
147 PF02985 HEAT: HEAT repeat; I 97.7 6.8E-05 1.5E-09 42.7 3.8 28 243-270 2-29 (31)
148 PF14500 MMS19_N: Dos2-interac 97.7 0.015 3.3E-07 52.9 20.9 141 286-429 5-156 (262)
149 PF14500 MMS19_N: Dos2-interac 97.7 0.021 4.5E-07 52.0 21.7 228 324-556 4-250 (262)
150 PF08506 Cse1: Cse1; InterPro 97.7 0.0064 1.4E-07 58.4 19.1 127 448-577 223-370 (370)
151 PF12719 Cnd3: Nuclear condens 97.7 0.02 4.3E-07 53.9 22.2 175 164-368 28-207 (298)
152 PF01347 Vitellogenin_N: Lipop 97.6 0.01 2.3E-07 62.7 21.6 218 331-577 376-617 (618)
153 PF12719 Cnd3: Nuclear condens 97.6 0.043 9.4E-07 51.7 23.4 214 365-581 34-284 (298)
154 PLN03076 ARF guanine nucleotid 97.6 0.094 2E-06 60.4 29.5 304 219-522 1109-1510(1780)
155 KOG1822 Uncharacterized conser 97.6 0.1 2.2E-06 58.6 27.9 232 236-467 871-1129(2067)
156 KOG1517 Guanine nucleotide bin 97.6 0.0018 3.9E-08 67.2 14.1 219 360-581 474-731 (1387)
157 KOG2021 Nuclear mRNA export fa 97.5 0.13 2.9E-06 52.1 42.3 510 8-562 2-585 (980)
158 KOG2933 Uncharacterized conser 97.5 0.007 1.5E-07 54.3 15.5 179 399-582 90-277 (334)
159 KOG0392 SNF2 family DNA-depend 97.5 0.21 4.5E-06 53.9 35.4 169 414-585 750-928 (1549)
160 PF01347 Vitellogenin_N: Lipop 97.4 0.059 1.3E-06 57.0 24.3 217 176-419 377-615 (618)
161 KOG1517 Guanine nucleotide bin 97.4 0.0088 1.9E-07 62.4 16.0 222 321-544 474-733 (1387)
162 KOG1851 Uncharacterized conser 97.3 0.44 9.6E-06 52.8 35.2 150 395-546 1524-1681(1710)
163 smart00638 LPD_N Lipoprotein N 97.3 0.033 7.1E-07 58.2 20.2 214 333-577 340-573 (574)
164 PF13251 DUF4042: Domain of un 97.2 0.0068 1.5E-07 51.3 11.6 60 524-583 112-175 (182)
165 smart00638 LPD_N Lipoprotein N 97.2 0.052 1.1E-06 56.7 20.4 162 360-538 395-573 (574)
166 KOG0891 DNA-dependent protein 97.2 0.89 1.9E-05 53.9 38.6 248 58-308 492-762 (2341)
167 PF12530 DUF3730: Protein of u 97.1 0.18 3.9E-06 45.4 21.7 194 170-371 8-216 (234)
168 PF11864 DUF3384: Domain of un 97.1 0.38 8.2E-06 48.5 32.8 252 318-580 175-464 (464)
169 KOG2933 Uncharacterized conser 97.1 0.022 4.8E-07 51.3 13.6 177 280-461 88-273 (334)
170 PF08506 Cse1: Cse1; InterPro 97.0 0.18 4E-06 48.6 20.1 140 294-460 225-370 (370)
171 KOG2021 Nuclear mRNA export fa 96.9 0.59 1.3E-05 47.8 39.3 454 99-558 206-781 (980)
172 KOG2160 Armadillo/beta-catenin 96.9 0.11 2.4E-06 48.2 17.1 173 409-581 95-281 (342)
173 cd00256 VATPase_H VATPase_H, r 96.8 0.59 1.3E-05 45.7 24.5 193 183-387 54-258 (429)
174 PF11864 DUF3384: Domain of un 96.8 0.71 1.5E-05 46.6 31.3 143 281-430 177-335 (464)
175 KOG0392 SNF2 family DNA-depend 96.6 0.082 1.8E-06 56.8 15.8 172 372-544 143-326 (1549)
176 KOG2011 Sister chromatid cohes 96.6 0.54 1.2E-05 50.5 21.7 130 406-540 296-432 (1048)
177 KOG0946 ER-Golgi vesicle-tethe 96.6 1.1 2.4E-05 46.2 32.6 193 99-310 36-242 (970)
178 KOG0891 DNA-dependent protein 96.6 2.6 5.5E-05 50.4 32.8 523 14-559 486-1055(2341)
179 KOG2973 Uncharacterized conser 96.6 0.57 1.2E-05 42.5 20.8 59 524-582 254-315 (353)
180 PF12530 DUF3730: Protein of u 96.6 0.55 1.2E-05 42.3 20.8 194 366-568 9-218 (234)
181 PF13251 DUF4042: Domain of un 96.5 0.037 8E-07 46.9 10.6 71 101-194 1-71 (182)
182 KOG2213 Apoptosis inhibitor 5/ 96.5 0.71 1.5E-05 43.3 18.8 57 450-507 255-317 (460)
183 KOG2213 Apoptosis inhibitor 5/ 96.4 0.84 1.8E-05 42.9 19.4 230 143-406 42-288 (460)
184 PF10363 DUF2435: Protein of u 96.4 0.042 9.1E-07 40.7 9.0 70 166-235 6-76 (92)
185 PF10274 ParcG: Parkin co-regu 96.4 0.098 2.1E-06 44.0 11.8 68 435-502 37-107 (183)
186 PF14664 RICTOR_N: Rapamycin-i 96.3 1.1 2.5E-05 43.3 24.6 222 203-426 26-269 (371)
187 KOG2160 Armadillo/beta-catenin 96.2 0.65 1.4E-05 43.3 17.5 176 292-467 95-284 (342)
188 PF11865 DUF3385: Domain of un 96.2 0.033 7.2E-07 46.5 8.5 140 239-387 8-157 (160)
189 PF12074 DUF3554: Domain of un 96.2 0.58 1.3E-05 45.1 18.2 58 251-309 33-90 (339)
190 PF12074 DUF3554: Domain of un 96.1 0.16 3.4E-06 49.0 14.0 89 24-115 2-90 (339)
191 PF11865 DUF3385: Domain of un 96.1 0.06 1.3E-06 45.0 9.6 148 434-585 8-160 (160)
192 PF01603 B56: Protein phosphat 96.1 1.4 3E-05 43.5 20.4 209 250-460 99-321 (409)
193 PF10274 ParcG: Parkin co-regu 96.0 0.21 4.6E-06 42.1 12.1 70 396-465 37-109 (183)
194 PF10363 DUF2435: Protein of u 96.0 0.11 2.3E-06 38.5 9.2 68 479-546 7-75 (92)
195 cd08050 TAF6 TATA Binding Prot 95.9 0.22 4.7E-06 47.7 13.6 132 366-504 186-340 (343)
196 KOG1993 Nuclear transport rece 95.9 2.6 5.7E-05 43.6 35.7 169 394-565 485-667 (978)
197 PF03224 V-ATPase_H_N: V-ATPas 95.9 1 2.2E-05 42.8 18.0 170 403-572 111-304 (312)
198 COG5234 CIN1 Beta-tubulin fold 95.8 2.6 5.7E-05 42.9 22.8 150 159-310 242-417 (993)
199 COG5656 SXM1 Importin, protein 95.7 2.9 6.3E-05 43.0 42.4 143 396-538 407-566 (970)
200 cd00256 VATPase_H VATPase_H, r 95.6 2.6 5.7E-05 41.3 25.3 139 171-309 109-258 (429)
201 PF01603 B56: Protein phosphat 95.5 2.9 6.3E-05 41.3 21.6 254 328-583 99-371 (409)
202 COG5234 CIN1 Beta-tubulin fold 95.5 3.5 7.5E-05 42.1 24.9 68 470-542 686-757 (993)
203 KOG2011 Sister chromatid cohes 95.4 4.8 0.0001 43.8 21.9 130 441-575 292-428 (1048)
204 KOG4500 Rho/Rac GTPase guanine 95.2 3 6.6E-05 39.9 32.4 379 162-544 86-520 (604)
205 PF08161 NUC173: NUC173 domain 95.2 0.39 8.4E-06 41.6 11.4 116 364-481 6-123 (198)
206 PF08161 NUC173: NUC173 domain 95.1 2 4.4E-05 37.3 16.4 164 414-580 17-197 (198)
207 PF11701 UNC45-central: Myosin 95.1 0.11 2.5E-06 43.3 7.6 129 97-226 16-154 (157)
208 KOG2022 Nuclear transport rece 95.1 5.4 0.00012 42.0 35.3 358 179-547 440-871 (982)
209 PF10521 DUF2454: Protein of u 95.0 0.73 1.6E-05 42.9 13.5 132 435-566 118-278 (282)
210 PF14664 RICTOR_N: Rapamycin-i 94.9 4 8.7E-05 39.6 23.7 226 238-466 22-270 (371)
211 KOG2005 26S proteasome regulat 94.9 5.1 0.00011 40.8 29.9 271 291-581 426-703 (878)
212 PF12054 DUF3535: Domain of un 94.8 4.9 0.00011 40.1 19.6 59 330-390 287-345 (441)
213 PF07571 DUF1546: Protein of u 94.8 0.12 2.6E-06 38.4 6.2 69 446-518 16-88 (92)
214 PF03378 CAS_CSE1: CAS/CSE pro 94.8 4.9 0.00011 40.0 20.0 189 160-352 68-276 (435)
215 cd08050 TAF6 TATA Binding Prot 94.7 0.73 1.6E-05 44.2 13.1 139 163-308 178-339 (343)
216 COG5537 IRR1 Cohesin [Cell div 94.7 3.1 6.6E-05 41.7 17.0 146 435-584 274-424 (740)
217 PF08167 RIX1: rRNA processing 94.7 1.3 2.7E-05 37.4 13.1 109 437-547 26-147 (165)
218 COG5656 SXM1 Importin, protein 94.7 6.2 0.00013 40.8 37.7 353 144-500 389-797 (970)
219 COG5110 RPN1 26S proteasome re 94.6 3.2 6.9E-05 41.1 16.5 30 10-39 48-77 (881)
220 PF10521 DUF2454: Protein of u 94.5 0.73 1.6E-05 42.9 12.3 39 410-448 237-277 (282)
221 PF12054 DUF3535: Domain of un 94.4 2.4 5.3E-05 42.2 16.1 57 140-196 102-159 (441)
222 PF04118 Dopey_N: Dopey, N-ter 94.4 4.5 9.7E-05 37.9 20.9 179 359-543 55-254 (307)
223 PF03378 CAS_CSE1: CAS/CSE pro 94.4 6 0.00013 39.3 19.3 193 239-433 69-279 (435)
224 PF08713 DNA_alkylation: DNA a 94.4 0.93 2E-05 40.3 12.3 64 202-269 120-183 (213)
225 KOG2549 Transcription initiati 94.4 0.8 1.7E-05 45.1 12.1 140 163-309 207-370 (576)
226 KOG1048 Neural adherens juncti 94.3 7.9 0.00017 40.3 23.6 148 435-582 517-684 (717)
227 PF08767 CRM1_C: CRM1 C termin 94.3 5.1 0.00011 38.1 18.4 156 413-568 43-229 (319)
228 KOG2549 Transcription initiati 94.2 3.3 7.2E-05 41.1 15.8 72 433-504 285-370 (576)
229 PF12231 Rif1_N: Rap1-interact 94.2 6.1 0.00013 38.6 29.9 270 293-581 59-351 (372)
230 PF08713 DNA_alkylation: DNA a 94.1 3.9 8.4E-05 36.3 17.5 134 201-349 50-185 (213)
231 KOG4500 Rho/Rac GTPase guanine 94.1 5.9 0.00013 38.1 30.6 147 435-581 314-474 (604)
232 KOG0889 Histone acetyltransfer 94.0 21 0.00046 44.2 37.1 284 278-562 982-1328(3550)
233 KOG0946 ER-Golgi vesicle-tethe 93.8 9.8 0.00021 39.7 39.9 299 10-309 23-399 (970)
234 PF03224 V-ATPase_H_N: V-ATPas 93.8 2.9 6.2E-05 39.8 15.0 140 440-579 109-266 (312)
235 KOG0889 Histone acetyltransfer 93.6 25 0.00054 43.7 37.6 281 201-482 983-1326(3550)
236 PF12830 Nipped-B_C: Sister ch 93.6 1.4 3E-05 38.2 11.3 69 475-545 8-76 (187)
237 cd03568 VHS_STAM VHS domain fa 93.5 0.67 1.4E-05 37.8 8.7 73 476-548 38-115 (144)
238 PF07571 DUF1546: Protein of u 93.3 0.33 7.1E-06 36.0 6.1 70 251-324 16-89 (92)
239 KOG2149 Uncharacterized conser 93.3 2.3 5E-05 40.5 12.8 110 363-472 63-177 (393)
240 KOG2759 Vacuolar H+-ATPase V1 93.3 8.1 0.00017 37.1 27.3 117 182-309 65-186 (442)
241 PF08167 RIX1: rRNA processing 93.2 4.1 8.9E-05 34.3 13.3 110 396-507 24-146 (165)
242 cd03567 VHS_GGA VHS domain fam 93.1 2.5 5.4E-05 34.2 11.2 71 477-547 40-120 (139)
243 PF11698 V-ATPase_H_C: V-ATPas 92.9 0.44 9.5E-06 36.9 6.3 67 515-581 44-114 (119)
244 cd03569 VHS_Hrs_Vps27p VHS dom 92.9 2.3 5.1E-05 34.6 11.0 88 474-561 40-132 (142)
245 PF05536 Neurochondrin: Neuroc 92.9 13 0.00028 38.4 31.5 173 216-392 71-266 (543)
246 PF08569 Mo25: Mo25-like; Int 92.6 9.7 0.00021 36.3 25.7 207 354-565 72-313 (335)
247 PF00514 Arm: Armadillo/beta-c 92.6 0.27 5.8E-06 29.9 4.0 30 513-542 11-40 (41)
248 PF04078 Rcd1: Cell differenti 92.5 2.5 5.4E-05 37.9 11.2 72 122-193 92-169 (262)
249 KOG1993 Nuclear transport rece 92.5 16 0.00034 38.3 30.9 150 216-367 501-665 (978)
250 KOG1848 Uncharacterized conser 92.4 22 0.00047 39.9 22.7 218 210-427 850-1133(1610)
251 PF04118 Dopey_N: Dopey, N-ter 92.4 9.7 0.00021 35.7 20.1 161 140-306 70-251 (307)
252 PF08389 Xpo1: Exportin 1-like 92.3 2.7 5.9E-05 34.6 11.3 47 450-498 100-147 (148)
253 PF12231 Rif1_N: Rap1-interact 92.3 12 0.00026 36.6 27.3 59 334-392 149-209 (372)
254 KOG0803 Predicted E3 ubiquitin 92.2 17 0.00037 41.3 19.4 212 362-574 45-296 (1312)
255 PF08389 Xpo1: Exportin 1-like 92.1 2 4.4E-05 35.3 10.2 140 412-577 3-148 (148)
256 KOG2149 Uncharacterized conser 92.1 3.9 8.4E-05 39.0 12.5 106 443-548 65-175 (393)
257 PF12830 Nipped-B_C: Sister ch 92.0 0.76 1.6E-05 39.7 7.6 69 512-582 6-74 (187)
258 KOG1851 Uncharacterized conser 92.0 26 0.00057 39.9 34.3 149 435-584 1525-1680(1710)
259 KOG2122 Beta-catenin-binding p 92.0 26 0.00056 39.8 21.9 210 294-505 365-602 (2195)
260 PF11701 UNC45-central: Myosin 92.0 1.1 2.3E-05 37.5 8.2 132 447-579 16-156 (157)
261 PF00514 Arm: Armadillo/beta-c 91.9 0.34 7.4E-06 29.5 3.9 31 551-581 10-40 (41)
262 cd07064 AlkD_like_1 A new stru 91.8 8.6 0.00019 33.9 15.5 134 86-233 46-181 (208)
263 cd03561 VHS VHS domain family; 91.5 3.1 6.6E-05 33.6 10.1 73 475-547 37-116 (133)
264 PF11698 V-ATPase_H_C: V-ATPas 91.4 1.6 3.4E-05 33.9 7.7 68 203-270 44-115 (119)
265 PF00790 VHS: VHS domain; Int 91.2 3.3 7.3E-05 33.7 10.1 75 474-548 41-123 (140)
266 KOG0803 Predicted E3 ubiquitin 91.1 32 0.0007 39.2 20.3 232 253-485 53-330 (1312)
267 COG5101 CRM1 Importin beta-rel 91.0 20 0.00043 36.5 29.1 155 198-352 477-652 (1053)
268 PF08623 TIP120: TATA-binding 90.7 0.92 2E-05 37.9 6.4 60 252-312 38-97 (169)
269 COG5098 Chromosome condensatio 90.4 24 0.00052 36.5 30.0 104 244-347 302-414 (1128)
270 PF08569 Mo25: Mo25-like; Int 90.4 17 0.00037 34.7 23.9 104 363-466 169-284 (335)
271 cd03568 VHS_STAM VHS domain fa 90.4 8.7 0.00019 31.4 11.7 74 202-275 37-115 (144)
272 KOG2973 Uncharacterized conser 90.3 15 0.00032 33.9 18.5 101 246-349 8-112 (353)
273 KOG1848 Uncharacterized conser 90.3 36 0.00078 38.4 24.5 217 365-582 849-1132(1610)
274 KOG2081 Nuclear transport regu 90.3 21 0.00046 35.8 37.5 387 160-582 60-495 (559)
275 PF12765 Cohesin_HEAT: HEAT re 90.1 0.57 1.2E-05 28.7 3.6 25 435-459 17-41 (42)
276 PF12765 Cohesin_HEAT: HEAT re 89.8 0.37 8E-06 29.5 2.6 22 281-302 19-40 (42)
277 smart00288 VHS Domain present 89.6 3.3 7.1E-05 33.4 8.7 71 477-547 39-115 (133)
278 cd06561 AlkD_like A new struct 89.5 11 0.00024 32.9 12.9 65 166-233 108-172 (197)
279 KOG2122 Beta-catenin-binding p 89.2 46 0.001 38.0 22.6 72 512-583 528-602 (2195)
280 PF08767 CRM1_C: CRM1 C termin 88.7 22 0.00049 33.8 23.6 60 409-469 132-198 (319)
281 KOG1048 Neural adherens juncti 88.5 36 0.00077 35.8 22.9 107 280-386 518-640 (717)
282 COG5537 IRR1 Cohesin [Cell div 88.3 18 0.0004 36.5 14.0 142 164-309 276-422 (740)
283 cd03561 VHS VHS domain family; 88.0 9.1 0.0002 30.9 10.2 96 407-508 14-116 (133)
284 KOG2022 Nuclear transport rece 87.9 41 0.0009 35.9 37.2 324 144-469 486-871 (982)
285 PF14868 DUF4487: Domain of un 87.8 36 0.00078 35.0 22.8 87 419-506 463-554 (559)
286 cd03565 VHS_Tom1 VHS domain fa 87.7 8.1 0.00017 31.5 9.8 72 477-548 40-120 (141)
287 KOG4524 Uncharacterized conser 87.4 47 0.001 36.0 33.3 91 436-526 803-901 (1014)
288 PF08064 UME: UME (NUC010) dom 87.1 11 0.00024 28.9 9.8 61 370-432 27-89 (107)
289 PF12397 U3snoRNP10: U3 small 87.1 13 0.00029 29.3 11.2 70 434-506 4-76 (121)
290 KOG3036 Protein involved in ce 87.0 22 0.00047 31.7 13.5 70 123-192 122-197 (293)
291 PF14225 MOR2-PAG1_C: Cell mor 86.9 19 0.00042 33.0 12.7 120 438-564 113-239 (262)
292 COG5095 TAF6 Transcription ini 86.8 25 0.00054 32.2 15.9 55 450-504 301-359 (450)
293 cd06561 AlkD_like A new struct 86.6 21 0.00045 31.1 15.5 64 244-310 108-171 (197)
294 smart00567 EZ_HEAT E-Z type HE 86.6 1.3 2.8E-05 24.6 3.3 28 490-525 2-29 (30)
295 PF14868 DUF4487: Domain of un 86.6 42 0.00091 34.6 23.7 86 496-582 462-552 (559)
296 PF08623 TIP120: TATA-binding 86.5 2.3 5E-05 35.5 6.1 97 214-311 39-149 (169)
297 COG5095 TAF6 Transcription ini 86.5 12 0.00026 34.1 10.7 54 529-582 302-359 (450)
298 cd00197 VHS_ENTH_ANTH VHS, ENT 86.0 11 0.00024 29.4 9.6 37 396-432 36-72 (115)
299 cd03569 VHS_Hrs_Vps27p VHS dom 86.0 17 0.00038 29.6 12.9 74 202-275 41-119 (142)
300 cd03567 VHS_GGA VHS domain fam 85.9 17 0.00037 29.5 12.2 96 406-507 14-119 (139)
301 PF11935 DUF3453: Domain of un 84.8 30 0.00065 31.3 14.2 30 399-428 45-74 (239)
302 COG5369 Uncharacterized conser 84.4 3 6.4E-05 41.2 6.5 109 435-543 430-545 (743)
303 PF00790 VHS: VHS domain; Int 84.3 21 0.00045 29.1 12.3 75 160-234 39-121 (140)
304 PF05536 Neurochondrin: Neuroc 84.3 55 0.0012 33.9 32.3 175 254-431 70-266 (543)
305 KOG2081 Nuclear transport regu 84.2 50 0.0011 33.4 37.4 249 290-548 257-541 (559)
306 KOG2759 Vacuolar H+-ATPase V1 83.4 46 0.00099 32.3 29.7 118 105-231 65-186 (442)
307 PF11935 DUF3453: Domain of un 82.5 38 0.00082 30.7 14.1 65 405-469 1-76 (239)
308 KOG2005 26S proteasome regulat 82.4 65 0.0014 33.4 19.7 75 467-545 632-706 (878)
309 cd00197 VHS_ENTH_ANTH VHS, ENT 81.8 21 0.00045 27.9 9.5 36 475-510 37-72 (115)
310 cd03572 ENTH_epsin_related ENT 81.3 14 0.00031 29.0 8.1 70 513-582 37-119 (122)
311 PF08064 UME: UME (NUC010) dom 81.2 23 0.00049 27.2 10.0 62 175-238 27-90 (107)
312 PF12397 U3snoRNP10: U3 small 80.9 25 0.00055 27.7 11.7 71 395-467 4-76 (121)
313 COG5369 Uncharacterized conser 79.9 8.5 0.00018 38.2 7.7 107 474-580 430-543 (743)
314 KOG2038 CAATT-binding transcri 79.3 90 0.0019 33.0 27.0 72 239-312 302-373 (988)
315 PF03130 HEAT_PBS: PBS lyase H 79.2 1.4 3.1E-05 23.8 1.5 13 491-503 1-13 (27)
316 PF07539 DRIM: Down-regulated 79.0 15 0.00032 29.9 7.8 82 279-367 16-97 (141)
317 cd07064 AlkD_like_1 A new stru 78.6 47 0.001 29.3 16.3 132 164-310 47-180 (208)
318 KOG1837 Uncharacterized conser 78.4 1.4E+02 0.003 34.7 29.0 92 493-586 1522-1615(1621)
319 KOG3678 SARM protein (with ste 78.4 41 0.00089 32.9 11.5 145 438-582 182-336 (832)
320 smart00185 ARM Armadillo/beta- 78.3 3.5 7.6E-05 24.7 3.3 28 515-542 13-40 (41)
321 PF09324 DUF1981: Domain of un 77.5 24 0.00051 25.8 7.9 67 513-579 16-85 (86)
322 KOG4646 Uncharacterized conser 76.5 37 0.00081 27.1 9.2 136 446-581 27-169 (173)
323 smart00802 UME Domain in UVSB 76.3 33 0.00071 26.4 8.9 58 373-432 30-89 (107)
324 smart00185 ARM Armadillo/beta- 76.1 3.2 7E-05 24.8 2.7 29 553-581 12-40 (41)
325 KOG3678 SARM protein (with ste 75.8 85 0.0018 30.9 17.0 142 90-231 184-336 (832)
326 KOG1566 Conserved protein Mo25 75.1 72 0.0016 29.7 18.4 137 441-577 171-328 (342)
327 PF14668 RICTOR_V: Rapamycin-i 75.1 14 0.00031 25.9 5.8 53 492-544 4-59 (73)
328 PF12612 TFCD_C: Tubulin foldi 74.6 31 0.00066 30.0 9.3 23 442-464 13-35 (193)
329 PF04078 Rcd1: Cell differenti 74.0 70 0.0015 29.1 17.9 109 437-545 96-220 (262)
330 PF06685 DUF1186: Protein of u 73.5 72 0.0016 29.0 16.3 136 251-407 52-195 (249)
331 KOG2199 Signal transducing ada 73.4 30 0.00065 33.0 9.0 87 407-499 22-113 (462)
332 PF09324 DUF1981: Domain of un 73.1 33 0.00071 25.1 7.6 67 161-227 15-84 (86)
333 smart00288 VHS Domain present 72.9 48 0.001 26.7 11.6 73 161-233 35-113 (133)
334 KOG1222 Kinesin associated pro 71.8 1.1E+02 0.0024 30.4 27.9 357 218-583 279-664 (791)
335 PF08324 PUL: PUL domain; Int 71.8 84 0.0018 29.0 12.5 98 484-581 119-230 (268)
336 KOG1932 TATA binding protein a 71.3 1.8E+02 0.0038 32.5 15.0 52 290-349 653-706 (1180)
337 PF14225 MOR2-PAG1_C: Cell mor 71.1 86 0.0019 28.8 18.8 126 398-529 112-243 (262)
338 cd03572 ENTH_epsin_related ENT 70.2 52 0.0011 26.0 10.6 36 435-470 37-72 (122)
339 PF11841 DUF3361: Domain of un 70.1 63 0.0014 26.9 10.9 98 451-548 32-136 (160)
340 KOG2199 Signal transducing ada 69.1 80 0.0017 30.3 10.7 77 200-276 43-124 (462)
341 PF07539 DRIM: Down-regulated 68.1 46 0.00099 27.1 8.2 50 160-214 14-63 (141)
342 PF06371 Drf_GBD: Diaphanous G 67.7 37 0.00081 29.2 8.4 56 487-542 128-186 (187)
343 KOG1087 Cytosolic sorting prot 66.8 77 0.0017 31.8 10.9 73 475-547 38-116 (470)
344 KOG1932 TATA binding protein a 66.6 2.2E+02 0.0048 31.8 15.3 102 244-347 677-802 (1180)
345 KOG3036 Protein involved in ce 65.4 1E+02 0.0022 27.6 12.8 97 448-544 137-248 (293)
346 KOG1087 Cytosolic sorting prot 65.4 77 0.0017 31.8 10.6 98 405-508 13-116 (470)
347 KOG0929 Guanine nucleotide exc 65.3 2.1E+02 0.0046 33.4 14.9 211 58-273 1048-1301(1514)
348 PF14228 MOR2-PAG1_mid: Cell m 64.9 2.6E+02 0.0056 32.0 31.5 139 160-311 193-359 (1120)
349 smart00802 UME Domain in UVSB 64.9 62 0.0013 24.9 9.1 72 164-237 12-89 (107)
350 KOG2229 Protein required for a 62.2 1.8E+02 0.0039 29.3 23.3 134 48-184 20-158 (616)
351 KOG4524 Uncharacterized conser 60.3 2.7E+02 0.0058 30.7 38.1 76 511-586 800-880 (1014)
352 PF04388 Hamartin: Hamartin pr 60.1 2.2E+02 0.0049 30.5 13.6 148 11-172 6-161 (668)
353 PF14668 RICTOR_V: Rapamycin-i 57.4 43 0.00093 23.5 5.4 54 531-584 4-60 (73)
354 KOG2038 CAATT-binding transcri 55.9 2.8E+02 0.0062 29.6 23.9 70 318-389 303-372 (988)
355 PF06371 Drf_GBD: Diaphanous G 55.8 85 0.0018 26.9 8.5 57 447-503 127-186 (187)
356 PF04510 DUF577: Family of unk 55.6 1.3E+02 0.0027 25.4 9.1 89 437-527 4-97 (174)
357 cd03565 VHS_Tom1 VHS domain fa 55.3 1.1E+02 0.0025 24.9 12.4 64 213-276 50-121 (141)
358 COG5110 RPN1 26S proteasome re 54.5 2.5E+02 0.0055 28.6 22.3 81 460-544 626-706 (881)
359 KOG3911 Nucleolar protein NOP5 53.4 1.6E+02 0.0036 27.6 9.6 73 10-82 8-87 (378)
360 PF08620 RPAP1_C: RPAP1-like, 52.8 37 0.00079 23.9 4.4 34 7-40 37-70 (73)
361 PF11707 Npa1: Ribosome 60S bi 51.8 2.3E+02 0.0049 27.3 16.2 145 438-582 58-237 (330)
362 COG5209 RCD1 Uncharacterized p 50.9 1.8E+02 0.0038 25.8 9.7 83 123-208 143-231 (315)
363 KOG3961 Uncharacterized conser 50.7 50 0.0011 28.7 5.7 87 476-562 115-208 (262)
364 KOG1988 Uncharacterized conser 50.7 3E+02 0.0066 29.8 12.1 112 437-548 25-136 (970)
365 KOG3961 Uncharacterized conser 50.5 24 0.00051 30.6 3.8 71 279-349 113-185 (262)
366 COG4912 Predicted DNA alkylati 49.5 98 0.0021 27.3 7.3 69 161-232 116-184 (222)
367 PF12783 Sec7_N: Guanine nucle 45.5 1.8E+02 0.004 24.4 10.7 70 435-504 72-146 (168)
368 KOG2229 Protein required for a 45.2 3.4E+02 0.0075 27.4 28.8 95 238-334 17-115 (616)
369 PF04388 Hamartin: Hamartin pr 43.3 4.5E+02 0.0098 28.3 14.2 145 93-250 11-161 (668)
370 KOG1086 Cytosolic sorting prot 42.8 2.5E+02 0.0054 27.6 9.4 25 557-581 177-201 (594)
371 PF12612 TFCD_C: Tubulin foldi 42.7 2.3E+02 0.0049 24.6 10.5 107 86-193 7-117 (193)
372 PF10304 DUF2411: Domain of un 42.3 56 0.0012 19.2 3.4 29 554-582 6-35 (36)
373 PF09450 DUF2019: Domain of un 41.7 33 0.00072 26.1 3.0 26 518-543 51-76 (106)
374 PF11919 DUF3437: Domain of un 41.6 1.2E+02 0.0025 22.5 5.8 56 490-546 4-61 (90)
375 COG4912 Predicted DNA alkylati 41.5 2.1E+02 0.0045 25.3 8.1 30 280-309 154-183 (222)
376 KOG4646 Uncharacterized conser 40.7 2E+02 0.0042 23.3 10.4 67 358-424 58-126 (173)
377 COG5101 CRM1 Importin beta-rel 39.9 4.6E+02 0.01 27.4 37.5 152 318-469 480-652 (1053)
378 cd03562 CID CID (CTD-Interacti 37.3 1.9E+02 0.0042 22.3 7.5 68 474-541 36-106 (114)
379 PF14222 MOR2-PAG1_N: Cell mor 36.0 5.3E+02 0.012 27.0 27.4 298 98-406 143-516 (552)
380 PF14222 MOR2-PAG1_N: Cell mor 35.4 5.4E+02 0.012 26.9 29.4 33 474-506 470-502 (552)
381 KOG2153 Protein involved in th 34.5 5.7E+02 0.012 26.9 32.2 231 298-529 303-560 (704)
382 PF12726 SEN1_N: SEN1 N termin 34.5 6.5E+02 0.014 27.5 35.9 111 85-196 119-247 (727)
383 COG5330 Uncharacterized protei 33.5 1.9E+02 0.0041 27.8 7.2 66 476-541 8-74 (364)
384 PF14663 RasGEF_N_2: Rapamycin 33.4 98 0.0021 24.2 4.7 34 433-466 5-38 (115)
385 PF12333 Ipi1_N: Rix1 complex 32.8 2.1E+02 0.0045 21.8 6.2 51 435-485 10-63 (102)
386 KOG2842 Interferon-related pro 31.7 5E+02 0.011 25.3 15.5 57 160-216 241-303 (427)
387 KOG1222 Kinesin associated pro 31.6 5.5E+02 0.012 25.9 30.5 297 160-465 342-663 (791)
388 KOG1877 Putative transmembrane 31.3 7.3E+02 0.016 27.2 13.3 51 261-311 76-128 (819)
389 COG1698 Uncharacterized protei 31.2 2.1E+02 0.0046 20.9 8.5 70 513-582 16-90 (93)
390 KOG4199 Uncharacterized conser 30.9 4.8E+02 0.01 24.9 27.8 144 438-581 285-443 (461)
391 KOG2374 Uncharacterized conser 29.9 5.7E+02 0.012 25.7 9.8 108 359-470 8-130 (661)
392 PF12243 CTK3: CTD kinase subu 29.6 3.1E+02 0.0067 22.3 10.1 29 514-542 40-68 (139)
393 KOG2153 Protein involved in th 29.3 7E+02 0.015 26.3 30.2 259 160-419 207-520 (704)
394 PF12333 Ipi1_N: Rix1 complex 29.0 2E+02 0.0044 21.8 5.6 38 83-120 8-45 (102)
395 PF04499 SAPS: SIT4 phosphatas 28.5 6.5E+02 0.014 25.7 10.7 16 529-544 215-230 (475)
396 PF14663 RasGEF_N_2: Rapamycin 27.6 1.7E+02 0.0036 22.9 5.1 33 472-504 5-37 (115)
397 PF04869 Uso1_p115_head: Uso1 26.5 5.7E+02 0.012 24.4 10.9 167 293-465 51-231 (312)
398 COG5330 Uncharacterized protei 26.1 3.2E+02 0.0069 26.4 7.4 69 435-503 6-75 (364)
399 COG5231 VMA13 Vacuolar H+-ATPa 26.1 5.7E+02 0.012 24.2 21.8 70 513-582 355-428 (432)
400 PF09268 Clathrin-link: Clathr 25.8 57 0.0012 17.1 1.4 18 476-493 4-21 (24)
401 COG1698 Uncharacterized protei 25.7 2.7E+02 0.0059 20.4 8.1 28 203-230 18-47 (93)
402 PF09450 DUF2019: Domain of un 24.0 1.9E+02 0.0041 22.1 4.5 25 362-386 51-75 (106)
403 PHA02503 putative transcriptio 23.8 1.9E+02 0.0041 18.1 3.6 19 465-483 27-45 (57)
404 KOG4151 Myosin assembly protei 23.4 9.6E+02 0.021 25.9 11.3 32 162-193 583-614 (748)
405 PF11791 Aconitase_B_N: Aconit 23.2 4.3E+02 0.0093 21.9 6.6 102 434-546 20-126 (154)
406 PF08620 RPAP1_C: RPAP1-like, 23.2 1.3E+02 0.0028 21.2 3.2 33 513-545 38-70 (73)
407 cd03562 CID CID (CTD-Interacti 23.2 3.5E+02 0.0077 20.8 8.7 67 396-462 36-105 (114)
408 KOG1988 Uncharacterized conser 22.5 1.1E+03 0.023 26.1 17.5 67 363-429 68-134 (970)
409 PF14228 MOR2-PAG1_mid: Cell m 22.2 1.3E+03 0.027 26.9 28.5 68 320-387 504-572 (1120)
410 PF12783 Sec7_N: Guanine nucle 22.1 4.8E+02 0.01 21.9 12.1 82 201-288 72-158 (168)
411 COG2733 Predicted membrane pro 22.1 7.6E+02 0.016 24.2 24.5 24 483-506 309-332 (415)
412 PF11919 DUF3437: Domain of un 21.9 2.9E+02 0.0062 20.5 5.0 49 532-581 7-57 (90)
413 KOG4199 Uncharacterized conser 21.4 7.3E+02 0.016 23.8 23.9 94 254-347 343-443 (461)
414 PF04821 TIMELESS: Timeless pr 21.4 6.5E+02 0.014 23.2 12.4 63 4-74 8-70 (266)
415 PF11262 Tho2: Transcription f 21.2 3.6E+02 0.0078 25.5 6.9 68 513-580 226-297 (298)
416 PF11229 DUF3028: Protein of u 20.8 9.2E+02 0.02 24.7 20.5 239 261-505 17-307 (589)
417 PF08158 NUC130_3NT: NUC130/3N 20.7 1.9E+02 0.0041 18.8 3.4 30 552-581 18-47 (52)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-52 Score=414.17 Aligned_cols=578 Identities=55% Similarity=0.826 Sum_probs=544.0
Q ss_pred CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhh
Q 007842 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (587)
Q Consensus 7 ~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 86 (587)
++||+..+++.++..|.+.|..+.+.+.+++..+|.++++.+++||+.+..++++++...++..+|.+.+++|++++...
T Consensus 80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ 159 (759)
T KOG0211|consen 80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHM 159 (759)
T ss_pred ccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHH
Confidence 79999999999999999999999999999999999999999999999997788899999999999999999999999999
Q ss_pred hHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCC-hHHHHHHH
Q 007842 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELR 165 (587)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~l~ 165 (587)
+++.++.+..+.+..||+.++..+..++..++.+.....+.|.+..+..++|+..|..++++++..+...+ +..+.++.
T Consensus 160 ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr 239 (759)
T KOG0211|consen 160 LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELR 239 (759)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999998 55999999
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-hhhhchHH
Q 007842 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILP 244 (587)
Q Consensus 166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~ 244 (587)
+...++++|.++.||..+++-++.+++.++.+.....++|.+.++..|+.+.||.+|...+..+...+... ...+.+.+
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~ 319 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTE 319 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhH
Confidence 99999999999999999999999999999888888999999999999999999999999999999988876 67788999
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC----HHHHHHhH
Q 007842 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHI 320 (587)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~i 320 (587)
.+.+..+|.+|++|......+..+...+|++.......+.+...++|..+++|.+++.-...++.... .....+.+
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i 399 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI 399 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence 99999999999999999999999999999988888899999999999999999999999999988776 33445677
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHh---hhhhhhhhchhhHHhh
Q 007842 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK---LDQVNQVIGIDLLSQS 397 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~---l~~l~~~~~~~~~~~~ 397 (587)
+|.+..+..|++..||.+.+..+..+...+|++...+.+.|.+...++|..+.||...... +..+....|.....+.
T Consensus 400 lp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s 479 (759)
T KOG0211|consen 400 LPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS 479 (759)
T ss_pred hHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhh
Confidence 8999999999999999999999999999999888888999999999999999999999954 4444556677788899
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhH
Q 007842 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477 (587)
Q Consensus 398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 477 (587)
.+|.+.++..|.+|++|.++++.+..++...|.+++.+.+.+++..++.|....+|.+|+..+..++..+|.+|....++
T Consensus 480 lLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i 559 (759)
T KOG0211|consen 480 LLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEI 559 (759)
T ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHH
Q 007842 478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC 557 (587)
Q Consensus 478 ~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~ 557 (587)
|.++.+..+++|.+|++.+.++..++..+|.+.+.+.++|.+..+..|++++||.++++.+..+.+.+......+.+.|.
T Consensus 560 ~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pl 639 (759)
T KOG0211|consen 560 PKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPL 639 (759)
T ss_pred HHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842 558 LVELTEDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 558 l~~l~~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
+..+.+|++.|||+.|..|++.+....
T Consensus 640 l~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 640 LETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999887643
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-29 Score=254.49 Aligned_cols=574 Identities=17% Similarity=0.202 Sum_probs=425.9
Q ss_pred HHHHHHhcC-ccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccC-CcHHHHHHHHHHhccccccCCCc--chHhhh
Q 007842 12 AVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-DDDEVLLAMAEELGVFIPYVGGV--EHAHVL 87 (587)
Q Consensus 12 ~~l~~~l~s-~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~~~~v~~~~~~~l~~l~~~~~~~--~~~~~l 87 (587)
+.|++.+.+ ..+.+|..-.+.+.++++...++ .|.+++|++.++.. .++..|..+...+..+...+|+. .|...+
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l 160 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDL 160 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHH
Confidence 456666655 46889999999999999999999 99999999999664 56677777777777776666653 266788
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHHHHHhhcC--hhhH--HhhHHHHHHHHh----cCCCCcchhhHHhhhHhhcCCCCh-
Q 007842 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMR--ESDL--VDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPD- 158 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~- 158 (587)
.++|.+-+.|+...||-.|+++++.++..++ ++.. ...++|-+...+ .+++...-..+...+..+....++
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 9999888888777799999999999999885 2222 234666444433 333333345566666666665554
Q ss_pred --HHHHHHHHHHHHhcCCC--ChHHHHHHHHhHHHHHHhhcc-----chhhhHHHHHHHHhhhCC---------------
Q 007842 159 --ILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQDD--------------- 214 (587)
Q Consensus 159 --~~~~~l~~~l~~l~~d~--~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~d~--------------- 214 (587)
.+...++.+......+. +..+|..+++.+..+++..+. ..+...+++.+..+..|.
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 35566777777766654 688999999999999988432 235556666666654221
Q ss_pred -chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCC
Q 007842 215 -QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRD 291 (587)
Q Consensus 215 -~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d 291 (587)
...-...|.+++..++-.++++...+.+++.+...++.++|+-|.++..+|+.+++..++.. ..+.+++..++.++|
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 12346688999999999999998899999999999999999999999999999998765422 345799999999999
Q ss_pred ChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhccCC-cHHHHHHHHHHHHccccccchhHH---HHhHHH-HH
Q 007842 292 NEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDAT---IEQLLP-IF 363 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~-~l 363 (587)
+.+.||.+|+.+++.+...+.++ .+.+.+.|.+...+.+. +++|...++.++.++.+...++.+ ++.++. .+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999988875 34455667777777765 679999999999999888776554 444444 44
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHhhChhhhHHH-
Q 007842 364 LSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDK- 436 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~----~~~vR~~~~~~l~~l~~~~~~~~~~~~- 436 (587)
..++.++.+.|++.++.+|+.++...+.+ .+.+.++|.+..++... ....|...+++++.++..+|++.|.+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 45566778999999999999999877654 35578899999887543 356788889999999999998887653
Q ss_pred --HHHHHHHh---cCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhcc------------------------
Q 007842 437 --LGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMIN------------------------ 485 (587)
Q Consensus 437 --l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~------------------------ 485 (587)
++..+..+ ..+.+...|...+.+++.+++.+|.+| +.+.++|.++...+
T Consensus 561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~ 640 (1075)
T KOG2171|consen 561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEV 640 (1075)
T ss_pred HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchh
Confidence 44444444 345666777778888888887777664 33444444433221
Q ss_pred ------------------------------------------------------CCchhHHHHHHHHHHHhhcc------
Q 007842 486 ------------------------------------------------------NPHYLYRMTILRAISLLAPV------ 505 (587)
Q Consensus 486 ------------------------------------------------------d~~~~~R~~a~~~l~~l~~~------ 505 (587)
.....+|.+|+.++..+...
T Consensus 641 ~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~ 720 (1075)
T KOG2171|consen 641 VELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQ 720 (1075)
T ss_pred hccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 11233455555555554321
Q ss_pred -------------------------------------------cCh----------------------------------
Q 007842 506 -------------------------------------------MGS---------------------------------- 508 (587)
Q Consensus 506 -------------------------------------------~~~---------------------------------- 508 (587)
+|.
T Consensus 721 ~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~ 800 (1075)
T KOG2171|consen 721 GGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDD 800 (1075)
T ss_pred cChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 110
Q ss_pred --------------------------------------HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--
Q 007842 509 --------------------------------------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 548 (587)
Q Consensus 509 --------------------------------------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-- 548 (587)
..+...+.|.+...+.++.++-|..++-.++.++...++.
T Consensus 801 eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~ 880 (1075)
T KOG2171|consen 801 EEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASA 880 (1075)
T ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccc
Confidence 0124567788888887777777999999999988887775
Q ss_pred HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 549 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
.+.+.++|.+.+++.|.+|+||.+|.+++|-++++-|+
T Consensus 881 ~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~ 918 (1075)
T KOG2171|consen 881 KYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGE 918 (1075)
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 67789999999999999999999999999999998764
No 3
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-31 Score=266.89 Aligned_cols=514 Identities=20% Similarity=0.268 Sum_probs=444.9
Q ss_pred hccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhH
Q 007842 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH 150 (587)
Q Consensus 71 l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~ 150 (587)
+.+++-.+|..-....++|.+.... +++..|...+...++.+....+...+...++|-+..++.+....+|..++..+.
T Consensus 106 l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~ 184 (759)
T KOG0211|consen 106 LSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLL 184 (759)
T ss_pred ccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333333343334556788887777 888899999999999998888777778888998888888887778888887666
Q ss_pred hhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 007842 151 IAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229 (587)
Q Consensus 151 ~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l 229 (587)
......+++ .+..+.+++..+..++-..-|..++..++.......++.+...+.+.+.++++|+++.||.++++.++.+
T Consensus 185 ~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~ 264 (759)
T KOG0211|consen 185 KVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNI 264 (759)
T ss_pred HHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHH
Confidence 655555444 5688889998888774444566777777777777766778899999999999999999999999999999
Q ss_pred hhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 007842 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (587)
Q Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 308 (587)
++.++.+...+.+.|.+.++..|....||..|...+..+...+..+ ...+.+.+.+.+..+|..|.+|......+..+.
T Consensus 265 a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 265 AKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELS 344 (759)
T ss_pred HHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHH
Confidence 9999988888899999999999999999999999999999988876 556678999999999999999999999999999
Q ss_pred hhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842 309 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 309 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
..+|++.......+.+..+++|..|.+|.+.+.-...+..... .+...+.++|.+..+..|.+..||.+.+..+..
T Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~ 424 (759)
T KOG0211|consen 345 SAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITG 424 (759)
T ss_pred HHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccc
Confidence 9888865556678889999999999999999998888887765 334456778999999999999999999999999
Q ss_pred hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH---HhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA---SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (587)
Q Consensus 385 l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
+.+.+|.+.....++|.+...++|..+.||...+..+...- ...|.+...+..+|.+..+-.|..|++|.+.+..+.
T Consensus 425 ~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip 504 (759)
T KOG0211|consen 425 LSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIP 504 (759)
T ss_pred cCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHH
Confidence 99999988777889999999999999999999996554433 344677788889999999999999999999999999
Q ss_pred HHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 462 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 462 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
.++...|.+++.+.+-+.+...+.|..+.+|.+|...+..++..+|.+|....+.|.++....++++.+|.+.+.++..+
T Consensus 505 ~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~l 584 (759)
T KOG0211|consen 505 QLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHEL 584 (759)
T ss_pred HHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHH
Confidence 99999998888888888888889999999999999999999999999999999999999999888999999999999999
Q ss_pred hhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 542 IPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 542 ~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
++.+|.+.+.+.++|.+..+..|++++||+++++.|..+.+++.
T Consensus 585 a~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~ 628 (759)
T KOG0211|consen 585 AEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD 628 (759)
T ss_pred HHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999988764
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-29 Score=249.50 Aligned_cols=543 Identities=17% Similarity=0.233 Sum_probs=420.1
Q ss_pred ccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc--CCcHHHHHHHHHHhcccc----ccCCCcc
Q 007842 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFI----PYVGGVE 82 (587)
Q Consensus 9 ~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~----~~~~~~~ 82 (587)
.++..|+..+-|+|.++|.+|-+.+.++.+ .+ .++|.|..+. ..++++|+.++-.+.++. +.+. .+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~---~~----~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e 75 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAK---TE----PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AE 75 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhc---cc----chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HH
Confidence 478899999999999999999999987643 22 2778777643 467788887776665543 2333 23
Q ss_pred hHhhhH-HHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---
Q 007842 83 HAHVLL-PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--- 158 (587)
Q Consensus 83 ~~~~l~-~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--- 158 (587)
....+. .+|..+...+.+.||++-.+.+..+++..-++ -|..+++++.+..++++...|.+|+.++..+...++.
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 333443 34555667889999999999999999998887 6899999999999999999999999999877665553
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-ch-------hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH-------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~-------~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
.+...+.+++.+.+.|++..||..++++++.++..+.. .. ..+.++..+....++.+...-..+.+.+..++
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 37789999999999999888999999999999999852 11 23444445555667777777788888888888
Q ss_pred hhcCh--hhhhhchHHHHHHhccCC--cHHHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHhcCCC----h----
Q 007842 231 KLLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRMDLVPAYVRLLRDN----E---- 293 (587)
Q Consensus 231 ~~~~~--~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~d~----~---- 293 (587)
...++ ......++.+......+. +..+|..|++.+..+++..+. ......+++.+...+.|. +
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 77665 234555666666666554 678999999999988886331 113346777777765321 1
Q ss_pred --------HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHH
Q 007842 294 --------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF 363 (587)
Q Consensus 294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l 363 (587)
..--..|..++..++.++|++...+.+++.+..++.+++|+-|.++..+++.+++.+++. ...+.++|++
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V 394 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIV 394 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 124567889999999999999888999999999999999999999999999999887652 3578899999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhHHHH--
Q 007842 364 LSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKL-- 437 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l-- 437 (587)
...++|+++.||.+|+.+++.+...+.++ .+.+.+.|.+...+.+ .+.+|...++.++-.+.....++.+.+++
T Consensus 395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~ 474 (1075)
T KOG2171|consen 395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG 474 (1075)
T ss_pred HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999999999999988764 3445667777777666 46799999988888888777665555443
Q ss_pred -HH-HHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc----hhHHHHHHHHHHHhhcccChH
Q 007842 438 -GA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH----YLYRMTILRAISLLAPVMGSE 509 (587)
Q Consensus 438 -~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~----~~~R~~a~~~l~~l~~~~~~~ 509 (587)
+. .+..++..+.+.||+.++.+++.++...+..| +-+.++|.+...+.+.+ ...|...+++++-++..+|.+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 33 34456688899999999999999999887775 45889999988876543 568888999999999999987
Q ss_pred HHH---hhHHHHHHhh---cCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHH
Q 007842 510 ITC---SRLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE 560 (587)
Q Consensus 510 ~~~---~~il~~l~~~---l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~ 560 (587)
.|. ..++..+..+ -.+.+...|.-.....+.++..+|++ ++...++|.+.+
T Consensus 555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence 653 4456666665 45567788999999999999999887 566777776655
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-29 Score=237.15 Aligned_cols=500 Identities=21% Similarity=0.202 Sum_probs=363.2
Q ss_pred cchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-------hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc
Q 007842 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (587)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~ 153 (587)
-.+++.++|.|.+++.+++....+.|..+|.++++.... +...+.++|.+.++.++.....|.-|+..+..+.
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 346789999999999999999999999999999885432 1234568888888999988889988888887666
Q ss_pred CCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 007842 154 PSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA 228 (587)
Q Consensus 154 ~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~ 228 (587)
..-+.. ..+.+++.+..+.+|++++||+.+|.++..+.+.-.+. .....++....+..+|.+.+|...|++.+.+
T Consensus 203 ~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 555443 55788889999999999999999999999998875431 2334455556666788889999999999999
Q ss_pred HhhhcCh----hhhhhchHHHHHHhc----------c------------------------------------C------
Q 007842 229 LGKLLEP----QDCVAHILPVIVNFS----------Q------------------------------------D------ 252 (587)
Q Consensus 229 l~~~~~~----~~~~~~l~~~l~~~~----------~------------------------------------d------ 252 (587)
+++.--. ..+.+.++|.+...+ + |
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 9875322 124555666654321 1 0
Q ss_pred ----CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHH
Q 007842 253 ----KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKE 326 (587)
Q Consensus 253 ----~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~ 326 (587)
.+|..|+..+.++..++..+|.+.. ..++|.+.+.+..++|.+|++++-+++.+++.+-.. .+++.++|++..
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~ 441 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS 441 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 1499999999999999999887653 568899999999999999999999999999977443 567889999999
Q ss_pred hccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHH---HHhhcCCChHHHHHHHHhhhhhhhhhchhh--HHhhHHHH
Q 007842 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF---LSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPA 401 (587)
Q Consensus 327 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~ 401 (587)
++.|+.+-||+..|+.++.++...-.+...+++.|.+ ...+-|.+..|+++|+.+++.+-+..|.+- +...++..
T Consensus 442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~ 521 (885)
T KOG2023|consen 442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQ 521 (885)
T ss_pred HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 9999999999999999999987664433334444544 455569999999999999999988777542 22233333
Q ss_pred HHHHh---cCCChHHHHHHHHHHHHHHHhhC----hhhhHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHhChHH
Q 007842 402 IVELA---EDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQ---WLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (587)
Q Consensus 402 l~~~~---~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
+...+ +.+|-.+ ...+++.++..+| ...|.+.++|.++. .++|.+.++ --.+++++.++..+|..|
T Consensus 522 l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF 597 (885)
T KOG2023|consen 522 LVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGF 597 (885)
T ss_pred HHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccc
Confidence 32222 2233333 5566777776664 44566777777754 467776554 346677888888777653
Q ss_pred --Hhh-------hhHHH----HHhhccC-----CchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChh
Q 007842 472 --AMQ-------HITPQ----VLEMINN-----PHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPN 529 (587)
Q Consensus 472 --~~~-------~l~~~----l~~~l~d-----~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~ 529 (587)
+.. .++.+ +.....+ ++...-.+++..+..+++.+|... ....++..+..+++|+.++
T Consensus 598 ~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~pe 677 (885)
T KOG2023|consen 598 LPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPE 677 (885)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChH
Confidence 111 12221 1111222 244556678888888888777532 3456888999999999999
Q ss_pred HHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 530 IKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 530 vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
||..+...+|-+.....+. ...+.++|.+..=++-..-.|-.+|..|+|.++--+|
T Consensus 678 VRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 678 VRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG 735 (885)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence 9999999999998776332 3445667776643333345789999999999987665
No 6
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.96 E-value=7.8e-25 Score=208.78 Aligned_cols=555 Identities=19% Similarity=0.286 Sum_probs=381.0
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcH-HH-HHHHHHHhccc---c-ccCCC---
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EV-LLAMAEELGVF---I-PYVGG--- 80 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~v-~~~~~~~l~~l---~-~~~~~--- 80 (587)
+..++-.++++.+.-|..+++.|.+-+..+|+.-..+.++|.+.+ .++|.+ +. ...+-+.|-++ + +|+..
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILv 444 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV 444 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEE
Confidence 677888899999999999999999999999999999999999987 455443 22 22333333222 2 22211
Q ss_pred --------cchHh-----hhHH-------------HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh
Q 007842 81 --------VEHAH-----VLLP-------------PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA 134 (587)
Q Consensus 81 --------~~~~~-----~l~~-------------~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 134 (587)
+++.. .++. .+.-=+.+.|+.||+...++++.++.+++- +.++||+..+|
T Consensus 445 Viepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLkavc 520 (1172)
T KOG0213|consen 445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVC 520 (1172)
T ss_pred EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHh
Confidence 11110 0111 111112466788999999999999988874 45899999999
Q ss_pred cCC-CCcchhhHHhhhHhhcCCCC---hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHH
Q 007842 135 AGE-WFTARVSACGLFHIAYPSAP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIF 207 (587)
Q Consensus 135 ~~~-~~~~r~~a~~~l~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l 207 (587)
.+. ++..|..++++...++...+ -.+...++.++..++.|.+..||..++.++..+++..++ +.+...+-|++
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLw 600 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLW 600 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 987 88889888887765544332 237788999999999999999999999999999998765 33434344443
Q ss_pred HHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--------
Q 007842 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------- 276 (587)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-------- 276 (587)
...-+. ....-.+.+++++.++....++ .+...++-++.+-.+.++.+.+...++.+.+.|..-|-+.
T Consensus 601 kgir~h-rgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil 679 (1172)
T KOG0213|consen 601 KGIRQH-RGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL 679 (1172)
T ss_pred HHHHHc-cChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh
Confidence 332222 2222223334444443322221 0111122222222333333333333333333332211100
Q ss_pred ---------------------------------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-----------
Q 007842 277 ---------------------------------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------- 312 (587)
Q Consensus 277 ---------------------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------- 312 (587)
....++.-.+.-++|+.+..|+.++.+...+...+|
T Consensus 680 p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~ 759 (1172)
T KOG0213|consen 680 PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEER 759 (1172)
T ss_pred HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 001122222333345555555555555555444333
Q ss_pred -------------------------------H--HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc---chhHHH
Q 007842 313 -------------------------------P--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKDATI 356 (587)
Q Consensus 313 -------------------------------~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~~ 356 (587)
. ..+.+.+...+...++++++.||..++..++.++..+ +.+..+
T Consensus 760 lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m 839 (1172)
T KOG0213|consen 760 LIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLM 839 (1172)
T ss_pred HHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 2 2344555666667788999999999999988887654 566677
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh-
Q 007842 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF- 432 (587)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~- 432 (587)
.++--++...+..+.++|--..+.++..+...+|.... ...++|.+..++++.+.++...++..++.++.. |++.
T Consensus 840 ~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE~v 918 (1172)
T KOG0213|consen 840 GHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPEYV 918 (1172)
T ss_pred HHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-CcccC
Confidence 78888889999999999999999999999988875532 256788888888999999999999999999865 3332
Q ss_pred ----hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh
Q 007842 433 ----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 433 ----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
++..... ++.+|...+.++|.+|..++|.+.+..|+. .++..+++.++..+.+.|.+..-+++-.++.+|+
T Consensus 919 ~aREWMRIcfe-LlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p 993 (1172)
T KOG0213|consen 919 SAREWMRICFE-LLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP 993 (1172)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc
Confidence 2332222 445667788999999999999999999985 4566666677777788888888899999998887
Q ss_pred HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842 509 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 509 ~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
-.++|.+.+-..-|+.+|+..++++++.+.+..+.. ++.-.+.|.|...+.|.|..-|..|..++.-+
T Consensus 994 ----FtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 994 ----FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred ----hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 357899998888999999999999999999988765 56678999999999999999999999887655
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.9e-25 Score=208.63 Aligned_cols=565 Identities=16% Similarity=0.192 Sum_probs=387.8
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcH-----HHHHHHHHHhccccccCCC---cch
Q 007842 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-----EVLLAMAEELGVFIPYVGG---VEH 83 (587)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~-----~v~~~~~~~l~~l~~~~~~---~~~ 83 (587)
+..+..+...++-.|.-.-..+.+|+.. +.-..|.+++|.+.+.++..+ ....++.+.+...+..+.. ..-
T Consensus 93 s~~l~~lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rp 171 (885)
T KOG2023|consen 93 SECLHGLGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRP 171 (885)
T ss_pred HHHHhhccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence 5566777778887877766666666544 345678899999988665433 3344444444443332221 234
Q ss_pred HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh--HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--
Q 007842 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-- 159 (587)
...++|-+.++.+++.|.+|.-|+.++.++...-...- -...++..+..+.+|++..+|...|..+..+.+..++.
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 56678888889999999999999999998754333221 12335556667788889999999988887776654432
Q ss_pred -HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc----chhhhHHHHHHHHhh----------h-C----------
Q 007842 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLT----------Q-D---------- 213 (587)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~l~----------~-d---------- 213 (587)
+...++++.....+|.+..|.-.||+-.-.++..--. ..+.+.++|++...+ + +
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 6788999999999999999999888888877765321 134556666654321 1 0
Q ss_pred -------------------------C----------chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHH
Q 007842 214 -------------------------D----------QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR 258 (587)
Q Consensus 214 -------------------------~----------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR 258 (587)
+ +++.|+-++.++..+++.++++ ..+.++|+++..+..+.|.||
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vr 410 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVR 410 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhh
Confidence 0 2678999999999999988876 688999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC---HHHHHHhHhHHHHHhccCCcH
Q 007842 259 YMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ 333 (587)
Q Consensus 259 ~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~ 333 (587)
++++-++|.+++.+-+... ...++|+++.++.|..+-||...+.+|++++..+- .+.+...++.-+.+.+-|++.
T Consensus 411 EagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK 490 (885)
T KOG2023|consen 411 EAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK 490 (885)
T ss_pred hhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH
Confidence 9999999999987654332 23689999999999999999999999999888653 334445566666666779999
Q ss_pred HHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhc---CCChHHHHHHHHhhhhhhhhhc----hhhHHhhHHHHHHH
Q 007842 334 HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVE 404 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~l~~l~~ 404 (587)
+|+++|+.++..+-+..|.+. +.+.++..+...++ ..+--+-. .+++.++...| ...+.+.++|.+.+
T Consensus 491 ~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY---DAIgtlAdsvg~~Ln~~~YiqiLmPPLi~ 567 (885)
T KOG2023|consen 491 KVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY---DAIGTLADSVGHALNKPAYIQILMPPLIE 567 (885)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH---HHHHHHHHHHHHhcCcHHHHHHhccHHHH
Confidence 999999999988876665532 23334333333332 22333333 34444444444 45667788887765
Q ss_pred ---HhcCCChHHHHHHHHHHHHHHHhhChhh--hH----HHHHHHHHH---h----cCC-----CchHHHHHHHHHHHHH
Q 007842 405 ---LAEDRHWRVRLAIIEYIPLLASQLGVGF--FD----DKLGALCMQ---W----LQD-----KVYSIRDAAANNLKRL 463 (587)
Q Consensus 405 ---~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~----~~l~~~l~~---~----l~d-----~~~~vr~~a~~~l~~l 463 (587)
.++|++..+ --.+++++.++.++|..+ |. +....++.+ . -.| ++.+.-..++..++-+
T Consensus 568 KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGL 646 (885)
T KOG2023|consen 568 KWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGL 646 (885)
T ss_pred HHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHH
Confidence 456655443 346788888888876443 11 112222211 1 111 2233344577777778
Q ss_pred HHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHH
Q 007842 464 AEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 464 ~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~ 537 (587)
++.+|... ....+...+...+.|+-+.||+.+...+|.+...+.... ....++|.+...++-..-.+-.+|+++
T Consensus 647 aegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WA 726 (885)
T KOG2023|consen 647 AEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWA 726 (885)
T ss_pred HHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHH
Confidence 87776532 345678888889999999999999999999998763321 245677777777777788899999999
Q ss_pred HHHhhhhhchHHHHhhHHHHHHH---hcC--CCCccHHHHHHHHHHHHHHh
Q 007842 538 LQSLIPIVDQSMVEKTIRPCLVE---LTE--DPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 538 l~~l~~~~~~~~~~~~i~~~l~~---l~~--d~d~~Vr~~a~~al~~l~~~ 583 (587)
+|.++.+++.+.. ..+-|.+.. ..+ -.+..+-.+.+-.+|+++.+
T Consensus 727 iGeia~k~g~~~~-~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~ 776 (885)
T KOG2023|consen 727 IGEIALKMGLKMK-QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYI 776 (885)
T ss_pred HHHHHHHhchhhh-hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc
Confidence 9999999887632 233333333 222 33446677777777777643
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-23 Score=201.26 Aligned_cols=525 Identities=17% Similarity=0.203 Sum_probs=367.7
Q ss_pred cHHHHHHHHHHhcccccc-CCCcchHhhhHHHHhhhhcchhhH-HHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc--
Q 007842 60 DDEVLLAMAEELGVFIPY-VGGVEHAHVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-- 135 (587)
Q Consensus 60 ~~~v~~~~~~~l~~l~~~-~~~~~~~~~l~~~l~~l~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-- 135 (587)
++.+...++++++.++.. +. ...++.+++.+...+.++.+. +++.++.+++.+++.++|+......-..+...+.
T Consensus 103 ep~~~s~Aaq~va~IA~~ElP-~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gm 181 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIELP-QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGM 181 (859)
T ss_pred CCCccchHHHHHHHHHHhhCc-hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhc
Confidence 333444445555544431 11 234566777777766666665 9999999999999999998766655555544443
Q ss_pred ---CCCCcchhhHHhhhHhhcC----CCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHH
Q 007842 136 ---GEWFTARVSACGLFHIAYP----SAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIM 204 (587)
Q Consensus 136 ---~~~~~~r~~a~~~l~~~~~----~~~-~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~ 204 (587)
.++..+|.+|...+..... .+. +..++.++...++..+.++.+||.++.++|.+++..... ....+.++
T Consensus 182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf 261 (859)
T KOG1241|consen 182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF 261 (859)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2367789888887754332 222 347788999999999999999999999999999887532 12233356
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHHHhhhc---------------Ch------hhhhhchHHHHHHhcc-------CCcHH
Q 007842 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLL---------------EP------QDCVAHILPVIVNFSQ-------DKSWR 256 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---------------~~------~~~~~~l~~~l~~~~~-------d~~~~ 256 (587)
++......++++.|...+++.+..+++.- +| ....+.++|.+.+++. |++|.
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 66666677888999999999999776531 11 0113357777766552 45799
Q ss_pred HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhccCCcH
Q 007842 257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQ 333 (587)
Q Consensus 257 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~ 333 (587)
.-.+|..+|.-++...|++..+ +++|.+.+-++.++|.-|.+++-+++.+.+...+. ...+..+|.+..+..|++-
T Consensus 342 p~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 9999999999999988877654 78999998999999999999999999998765443 3456778888999999999
Q ss_pred HHHHHHHHHHHccccccch----hHHHHhHHHH----------------------------------------------H
Q 007842 334 HVRSALASVIMGMAPLLGK----DATIEQLLPI----------------------------------------------F 363 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~----------------------------------------------l 363 (587)
.||.+++++++.+++.++. +.....+++. +
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii 500 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAII 500 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHH
Confidence 9999999999998876531 1111112222 2
Q ss_pred HHhhc-----C-CChHHHHHHHHhhhhhhhhhchh---------------------------------------------
Q 007842 364 LSLLK-----D-EFPDVRLNIISKLDQVNQVIGID--------------------------------------------- 392 (587)
Q Consensus 364 ~~~l~-----d-~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------- 392 (587)
-.+++ | ...+.|.++.++|..+++....+
T Consensus 501 ~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq 580 (859)
T KOG1241|consen 501 GSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQ 580 (859)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH
Confidence 22221 2 23567778888877776543211
Q ss_pred -----------hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhc-CCCchHHHHHHH
Q 007842 393 -----------LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAA 457 (587)
Q Consensus 393 -----------~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~ 457 (587)
...+.++..+..+++. .+..+...++.+++.++..+|+.+ +.+.+.|.+...+ +-.+..|-.+|+
T Consensus 581 ~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aV 660 (859)
T KOG1241|consen 581 SIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAV 660 (859)
T ss_pred HHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 1112233333333343 233345556667777777777554 5678889888888 556788999999
Q ss_pred HHHHHHHHHhChHH--HhhhhHHHHHhhccCCc--hhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhc---CCC--
Q 007842 458 NNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS---KDR-- 526 (587)
Q Consensus 458 ~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l---~d~-- 526 (587)
..+|.+++.++.++ +.+.++..|.+.+.+++ ..++-..+.++|.++-.+|.++ +.+.++|.+.... .|+
T Consensus 661 glVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~ 740 (859)
T KOG1241|consen 661 GLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPAD 740 (859)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 99999999988875 46788888888888874 5688889999999998888765 5777888877764 222
Q ss_pred ------ChhHHHHHHHHHHHhhhhhch-------HHHHhhHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHhhcc
Q 007842 527 ------VPNIKFNVAKVLQSLIPIVDQ-------SMVEKTIRPCLVELTEDPDV--DVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 527 ------~~~vR~~~~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~~d~d~--~Vr~~a~~al~~l~~~~~~ 586 (587)
...+|..++++...+...++. ..+...++..+.+...|++- .+-..|..-++.|+.+.|+
T Consensus 741 ~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~ 815 (859)
T KOG1241|consen 741 DSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGK 815 (859)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHccc
Confidence 346899999999888877663 14566777777777666654 4666777778888887763
No 9
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.94 E-value=8.5e-23 Score=191.28 Aligned_cols=556 Identities=17% Similarity=0.242 Sum_probs=386.2
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcH-H-HHHHHHHHhcccc----ccCCC---
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-E-VLLAMAEELGVFI----PYVGG--- 80 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~-v~~~~~~~l~~l~----~~~~~--- 80 (587)
+..++-.++++++.-|..+++.|.+-+..+|++...+.++|.+.+ .+++.+ + +...+-+.|-.+. +|+..
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILv 249 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILV 249 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEE
Confidence 456777899999999999999999999999999999999999987 455433 2 2233333332221 22110
Q ss_pred --------cchH-----hh-hHHH------------HhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh
Q 007842 81 --------VEHA-----HV-LLPP------------LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA 134 (587)
Q Consensus 81 --------~~~~-----~~-l~~~------------l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 134 (587)
++.. .. +..+ +.-=+.+.|+.||+...++.+.++++++- +.++|++..++
T Consensus 250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c 325 (975)
T COG5181 250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALC 325 (975)
T ss_pred EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHh
Confidence 0000 00 1111 11112467889999999999999999885 45899999999
Q ss_pred cCC-CCcchhhHHhhhHhhcCCCCh---HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHH
Q 007842 135 AGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIF 207 (587)
Q Consensus 135 ~~~-~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l 207 (587)
.+. ++..|..++.+...++..++. .+...++..+..++.|.+..||..++.++..+++..++ +.+...+-|++
T Consensus 326 ~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw 405 (975)
T COG5181 326 GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLW 405 (975)
T ss_pred cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 987 888888888877666554432 36678889999999999999999999999999998876 33444444544
Q ss_pred HHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhc----------------------cCCcHHHHHHHH
Q 007842 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFS----------------------QDKSWRVRYMVA 262 (587)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~----------------------~d~~~~vR~~a~ 262 (587)
....+... .+-.+.+++.+.+...+.++ ........++...+ .+.-|..|....
T Consensus 406 ~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~ 484 (975)
T COG5181 406 EGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVS 484 (975)
T ss_pred HHHHhcCC-chHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhc
Confidence 43333222 22223333443333333321 01111122222222 233344443322
Q ss_pred -HHHHHHHHH--hC----------------CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----------
Q 007842 263 -NQLYELCEA--VG----------------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------- 313 (587)
Q Consensus 263 -~~l~~~~~~--~~----------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------- 313 (587)
+.+..+... .+ +......+..-+++.++|+....|+.++.+...+...+|.
T Consensus 485 pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleer 564 (975)
T COG5181 485 PEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEER 564 (975)
T ss_pred HHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHH
Confidence 111211111 00 0011234556666677787777777777776666555441
Q ss_pred ----------------------------------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc---cchhHHH
Q 007842 314 ----------------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL---LGKDATI 356 (587)
Q Consensus 314 ----------------------------------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~---~~~~~~~ 356 (587)
..+...++..+..++.++.+.||..++..++.++.. +|....+
T Consensus 565 l~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l 644 (975)
T COG5181 565 LYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKEL 644 (975)
T ss_pred HHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 123345666677888999999999999888777654 4666677
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh----C
Q 007842 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL----G 429 (587)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~----~ 429 (587)
.++-.++...+....++|--..++++..+....+...+ ...++|.+..++.+++.++....+..++.++..- |
T Consensus 645 ~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~ 724 (975)
T COG5181 645 AKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG 724 (975)
T ss_pred HHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC
Confidence 78888899999999999999999999999887764421 2467888888888999999999999999988642 3
Q ss_pred hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH
Q 007842 430 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509 (587)
Q Consensus 430 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~ 509 (587)
...+...... ++..|...+.++|.+|..++|.+.+..|+. .++..+++.++..+.+.|.+..-+++-.++.+|+
T Consensus 725 ~rEWMRIcfe-Lvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp- 798 (975)
T COG5181 725 VREWMRICFE-LVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP- 798 (975)
T ss_pred HHHHHHHHHH-HHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-
Confidence 3333333333 445667889999999999999999999985 4566667777777888899999999999999997
Q ss_pred HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 510 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
-.++|.+..-..-|+.+|+..++++++.+.+..+.. ++.-.+.|.|...+.|.|+.-|..|...+.-+
T Consensus 799 ---fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 799 ---FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred ---hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 467899998888999999999999999999988775 56778999999999999999999998876544
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.93 E-value=8.9e-22 Score=192.99 Aligned_cols=570 Identities=14% Similarity=0.160 Sum_probs=402.0
Q ss_pred HHHHHhcCccHHHHHHHhhcHHH----HHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842 13 VLIDELKNDDIQLRLNSIRRLST----IARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (587)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~----~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l 87 (587)
.|++.|.|.|.+-|++|...|.+ -...++.+... .++..+.+.+ |.+.||+..+.+|+|-++..++ +.....+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~-kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk-e~~le~~ 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSER-KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK-EDQLETI 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchh-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch-HHHHHHH
Confidence 78999999999999999776653 33444444443 4455554544 5678999999999999987776 3556666
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-------hhHHhhHHHHHHHHhc--CCCCcchhhHHhhhHhhcCCCC-
Q 007842 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAA--GEWFTARVSACGLFHIAYPSAP- 157 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~l~~--~~~~~~r~~a~~~l~~~~~~~~- 157 (587)
..-|..-.-+.....|+-+.-.|..+..+++| ..+.+.+.|.+..... .+.+..+..++.+++....+.+
T Consensus 87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 66655554467788899999999998888876 2334556666654433 3466688888888876544433
Q ss_pred --hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh
Q 007842 158 --DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (587)
Q Consensus 158 --~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
++....++..+...+..+...||+.++.+++.++...+.+.+...+..++..+-+......-+..+++++.++...+.
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 346777888888778888899999999999999999977767666666666666666665566788899999888776
Q ss_pred --hhhhhchHHHHHHhc---cCCcHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhc-------------------
Q 007842 236 --QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLL------------------- 289 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~---~d~~~~vR~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~l------------------- 289 (587)
....+.+.|.+.+.+ +..+.+.|+..+++++.+....+.+..+ +.++....+.+
T Consensus 247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 345778999999988 6677899999999999999887654322 23333333322
Q ss_pred -------------C--CChHHHHHHHHHhHHHHHhhhCH--HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc-
Q 007842 290 -------------R--DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG- 351 (587)
Q Consensus 290 -------------~--d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~- 351 (587)
. |-.|.||++|++++..+.....+ ..+...+-|.+...+++....|+.-.+.++..+....+
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 1 12488999999999988764332 14556777888888888888888877766554432211
Q ss_pred -------hh-----------H----HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--hhHHhhHHHHHHHHhc
Q 007842 352 -------KD-----------A----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAE 407 (587)
Q Consensus 352 -------~~-----------~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~ 407 (587)
.+ . ....++..+.+.+++.+...|..++..|..++..+.. .+....++|.+...+.
T Consensus 407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence 00 0 1234455555666666666777788877777765532 2334677888888888
Q ss_pred CCC--hHHHHHHHHHHHHHHHhhChhhhHH---HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---------HHHh
Q 007842 408 DRH--WRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------EWAM 473 (587)
Q Consensus 408 ~~~--~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~ 473 (587)
|.+ ...+..++..+..+....+++.|.+ .+.|.+.....|+-+.+-..|+.+.+.+++.+.+ ..+.
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v 566 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV 566 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH
Confidence 765 4456666666666555567777764 4677788889999999999999999999986533 2234
Q ss_pred hhhHHHHHhh--ccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh---hc
Q 007842 474 QHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VD 546 (587)
Q Consensus 474 ~~l~~~l~~~--l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~---~~ 546 (587)
..++....+. .+|.+..||+.|+.++|.+...+|... ..+.++|.+.+.++ +...|..+++++.-|+.. +.
T Consensus 567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~ 644 (1233)
T KOG1824|consen 567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDID 644 (1233)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceee
Confidence 5555555554 467789999999999999998888421 35667777777765 577899999999998764 22
Q ss_pred hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 547 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 547 ~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
.......++|.+...+.-.....|.....++.++.+..++
T Consensus 645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~ 684 (1233)
T KOG1824|consen 645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSD 684 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2345566777777766655666777778888877775543
No 11
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=7.5e-21 Score=181.90 Aligned_cols=544 Identities=16% Similarity=0.138 Sum_probs=384.3
Q ss_pred cCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhc-cC-CcHHHHHHHHHHhccccccCCC--cchHhhhHHHHhhh
Q 007842 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-ND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETL 94 (587)
Q Consensus 19 ~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~-~~~~v~~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l 94 (587)
.+.|+=+|.-..++++..+.++|-+ .++|||... -+ .+.+.|..-.++..+++-+.|. -.|...++.++++.
T Consensus 486 dn~deYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 486 DNKDEYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 3567889999999999999998855 789999873 33 3567676666666555544443 23667788999999
Q ss_pred hcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH----HHHHHHHH
Q 007842 95 CTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSI 167 (587)
Q Consensus 95 ~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~ 167 (587)
+.|+...||.-++.++..+++...|- .+...+.|+......+-. ..-.+.++.++.+++...++ +-.+++-+
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevmli 640 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVMLI 640 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHHH
Confidence 99999999999999999999887663 444445666554443321 11233445566666666554 23344455
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHHhhccch--hhhHHHH---------------------------------------H
Q 007842 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMS---------------------------------------I 206 (587)
Q Consensus 168 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~---------------------------------------~ 206 (587)
+..-.++++.+.++.++..+...+..-+-+. ....++| -
T Consensus 641 l~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R 720 (1172)
T KOG0213|consen 641 LIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSR 720 (1172)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHH
Confidence 5555667777777777776666665544211 0011111 1
Q ss_pred HHHhhhCCchhHHHHHHHHHHHHhhhcC------------------------------------------h--hhhhhch
Q 007842 207 FEDLTQDDQDSVRLLAVEGCAALGKLLE------------------------------------------P--QDCVAHI 242 (587)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~------------------------------------------~--~~~~~~l 242 (587)
+..-+.|+.+..|+...+....+...++ . ..+.+.+
T Consensus 721 ~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi 800 (1172)
T KOG0213|consen 721 VVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQI 800 (1172)
T ss_pred HhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHH
Confidence 1111245555566666555555443322 1 1123345
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---H
Q 007842 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---A 316 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~ 316 (587)
...+...++++++.||..|+..++.++..+... ....++--++.+.++.+.++|--..+.++..+...+|-.. -
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 555666778899999999999999888765433 2233455567788888889999888888888888776431 2
Q ss_pred HHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc----chhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 317 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (587)
...++|.+...+++.+..|...++..++.++..- +..+++..-. -++.+|+..+.++|.++.++++.+++.+|+.
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-eLlelLkahkK~iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-ELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence 3567888888899999999999999999987643 2333332222 3556778888999999999999999999987
Q ss_pred hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH--
Q 007842 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-- 470 (587)
Q Consensus 393 ~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-- 470 (587)
.. +..+.+-++..+...|....-+++.+++..|+- .++|.+++--..++..|+...+++++.+++..|.-
T Consensus 960 dV----LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 960 DV----LATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred HH----HHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 54 444555455555566666666677777777653 26788888788899999999999999999987753
Q ss_pred HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc---ccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 471 ~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
.+...+.|.+.+.+.|.+...|+.|..++.+++- .+|.+...-+++..+....-+++|.|..+...++..+...+|+
T Consensus 1032 dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1032 DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence 3567789999999999999999999999999975 4556666778888888888899999999999999999999888
Q ss_pred HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842 548 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 548 ~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
..+...++ +-+-.+...||..-.+.+..+
T Consensus 1112 ~~~~~Y~~----QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1112 QAMLKYCL----QGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHHHHHH----HhccCcHHHHHHHHHHHHHhH
Confidence 76555444 445778888988888777665
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=3.1e-21 Score=210.33 Aligned_cols=561 Identities=13% Similarity=0.129 Sum_probs=400.9
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChH---hhhhhhhhhhhhccC--CcHHHHHHHHHHhccccccCCCcchH
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE---RTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGVEHA 84 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~---~~~~~l~p~l~~~~~--~~~~v~~~~~~~l~~l~~~~~~~~~~ 84 (587)
-+..|++.++++++..+..|+..+..++...+.. -.....+|.+.+.++ ++..+|..++.+|++++. ++.++.
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs--~s~e~r 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSS--QSKEAK 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhc--CCHHHH
Confidence 4678899999999999999988776665432211 122366888888664 345889999999988875 333333
Q ss_pred hh-----hHHHHhhhhcchh---------hHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhh
Q 007842 85 HV-----LLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF 149 (587)
Q Consensus 85 ~~-----l~~~l~~l~~~~~---------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l 149 (587)
.. -+|.|..++..+. ...++.|..+|++++... ..++|++.++.++. +......++..+
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gAL 341 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGAL 341 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhH
Confidence 22 2344444444333 446899999999999765 34778887777654 222233455555
Q ss_pred HhhcC---CCChHHH----HHHHHHHHHhcCCCChH-HHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHH
Q 007842 150 HIAYP---SAPDILK----TELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVR 219 (587)
Q Consensus 150 ~~~~~---~~~~~~~----~~l~~~l~~l~~d~~~~-vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr 219 (587)
..+.. ...+..+ ..+.+.|.+++.++++. ++..+..+|..+.....- -.......+.+..++...+..++
T Consensus 342 ayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ 421 (2102)
T PLN03200 342 AYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQ 421 (2102)
T ss_pred HHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHH
Confidence 55422 2222111 23457888999988776 477777777553332110 01223456677888888888999
Q ss_pred HHHHHHHHHHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCh
Q 007842 220 LLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE 293 (587)
Q Consensus 220 ~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~ 293 (587)
..++..+..++..-.. .......+|.+.+++.+++..+|..++..++.++..-.. .......+|.+.+++.+++
T Consensus 422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~ 501 (2102)
T PLN03200 422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS 501 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 9999999998865222 122334688999999988999999999999988752211 1123468999999999999
Q ss_pred HHHHHHHHHhHHHHHhhhCH-HH-H-HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC
Q 007842 294 AEVRIAAAGKVTKFCRILNP-EL-A-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 370 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~-~~-~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (587)
..+|+.|+.+++.++..-.+ .. + ....+|.+.+++++.++++|..+++++.++...-..+ .++.+..++..+
T Consensus 502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsd 576 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLGD 576 (2102)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcCC
Confidence 99999999999999873211 11 2 2357888999999999999999999999986543222 336677788888
Q ss_pred ChHHHHHHHHhhhhhhhhhchhhH------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHH
Q 007842 371 FPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALC 441 (587)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~~~~~~~------~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l 441 (587)
++.++..++..++.+......+.. ....+|.+.+++++++.+++..++..+..++..-. ........+|.+
T Consensus 577 d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPL 656 (2102)
T PLN03200 577 LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPC 656 (2102)
T ss_pred ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 899999999999888765443321 13578999999999999999999999988875321 112334567888
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH--HHHhhH
Q 007842 442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRL 515 (587)
Q Consensus 442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~--~~~~~i 515 (587)
+.++.+.+..+|..++.+|+.+......+. .....+|.+.+++++++..++..++.++.+++..-... ......
T Consensus 657 V~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~ 736 (2102)
T PLN03200 657 IKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDI 736 (2102)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc
Confidence 999999999999999999999996333221 23558899999999999999999999999998754322 234667
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHH------HHhhHHHHHHHhcCCCCccHHHH--HHHHHHHHHHh
Q 007842 516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM------VEKTIRPCLVELTEDPDVDVRFF--ATQAIQSIDHV 583 (587)
Q Consensus 516 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~------~~~~i~~~l~~l~~d~d~~Vr~~--a~~al~~l~~~ 583 (587)
++.+.+++++.++.+|.+++.+|.+++...+.++ .....+..|..+++-.|.++-.. |..+|..+.+.
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 8999999999999999999999999998876543 22345666777777777766655 88888888774
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=6e-21 Score=208.15 Aligned_cols=563 Identities=13% Similarity=0.098 Sum_probs=391.9
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHh------hhhhhhhhhhhccCCc---H-HHHHHHHHHhccccccCC
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER------TRKELIPFLSENNDDD---D-EVLLAMAEELGVFIPYVG 79 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~------~~~~l~p~l~~~~~~~---~-~v~~~~~~~l~~l~~~~~ 79 (587)
.+..|++-|++++++.|..|+..|..++..-..+. .....+|.|...+.+. + -++..++.+|.+++..-+
T Consensus 100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e 179 (2102)
T PLN03200 100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD 179 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence 46778899999999999999999999875321121 1246688887755432 2 244555667777765322
Q ss_pred Ccc---hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh---hhHHhhHHHHHHHHhcC-CCCcchhhHHhhhHhh
Q 007842 80 GVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIA 152 (587)
Q Consensus 80 ~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~ 152 (587)
+.. .....+|.+..++.++++.++..|..++..++...+. ..+....+|.+.+++.+ ++..+|..|+..++.+
T Consensus 180 n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL 259 (2102)
T PLN03200 180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL 259 (2102)
T ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 110 1123678888888899999999999999888765432 22345578888888865 4557888899888888
Q ss_pred cCCCChH----HHHHHHHHHHHhcCCCC---------hHHHHHHHHhHHHHHHhhccchhhhHHHHH-------------
Q 007842 153 YPSAPDI----LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEPAHLKTDIMSI------------- 206 (587)
Q Consensus 153 ~~~~~~~----~~~~l~~~l~~l~~d~~---------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~------------- 206 (587)
+.+.++. .....+|.|..++..++ ...++.+.-+|++++... ..+++.
T Consensus 260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~ 333 (2102)
T PLN03200 260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAP 333 (2102)
T ss_pred hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHH
Confidence 8764322 22345677777766554 345888888888887642 112222
Q ss_pred ---------------------------------HHHhhhCCchh-HHHHHHHHHHHHhhhcC--hhhhhhchHHHHHHhc
Q 007842 207 ---------------------------------FEDLTQDDQDS-VRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFS 250 (587)
Q Consensus 207 ---------------------------------l~~l~~d~~~~-vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~ 250 (587)
+..++.+.++. +...+..+|..+..... .-.......+.+..++
T Consensus 334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL 413 (2102)
T PLN03200 334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI 413 (2102)
T ss_pred HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence 22333322221 12222222222111000 0001122344455556
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHH
Q 007842 251 QDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCV 324 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l 324 (587)
...+..+|..++.++..++..-.+ .......+|.+++++++.+..+|..++..++.++..-... ......+|.+
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 666678999999998887743110 1122347899999999999999999999999987633221 2234678999
Q ss_pred HHhccCCcHHHHHHHHHHHHccccccch-hH-H-HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842 325 KELSSDSSQHVRSALASVIMGMAPLLGK-DA-T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~-~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 401 (587)
.+++..++..+|..+++++++++..-.. .. . ....+|.+.+++++.++.++..++.+|..+...-.. ..++.
T Consensus 494 V~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~~ 568 (2102)
T PLN03200 494 VQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATISQ 568 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHHH
Confidence 9999999999999999999999863211 11 2 235788899999999999999999999999765332 23466
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhh-h-----HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHH
Q 007842 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGF-F-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWA 472 (587)
Q Consensus 402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~-~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 472 (587)
+..++..++..++..++..++.+........ . ....+|.+..++.+++..++..|+.++..++..-.. ...
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7777888888888888998888866443221 1 123678899999999999999999999999863211 224
Q ss_pred hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 473 ~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
....+|.++.++.+.+..+|..+.++|+++........ ....++|.+.+++++++..++..++.+|.++...-...
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 46788999999999999999999999999986433322 24568999999999999999999999999998764332
Q ss_pred --HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 549 --MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 549 --~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
......+|.|.+++.+..+.+|..|+.||..+++.
T Consensus 729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 34467789999999999999999999999998864
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.9e-20 Score=176.91 Aligned_cols=566 Identities=15% Similarity=0.123 Sum_probs=394.7
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc--C-CcHHHHHHHHHHhccccccCCCcc-------
Q 007842 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--D-DDDEVLLAMAEELGVFIPYVGGVE------- 82 (587)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~-~~~~v~~~~~~~l~~l~~~~~~~~------- 82 (587)
.+++..-|+|...|..|...|...+.... ..++..+.+.+ + +.+..|..++-.|.+-... ..++
T Consensus 5 ~~le~tlSpD~n~~~~Ae~~l~~~~~~nf-----~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~a-kd~~~k~~~~q 78 (859)
T KOG1241|consen 5 ELLEKTLSPDQNVRKRAEKQLEQAQSQNF-----PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTA-KDPERKQQYQQ 78 (859)
T ss_pred HHHHHHcCCCcchHHHHHHHHHHHHhccH-----HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhcc-CCHHHHHHHHH
Confidence 45566889999999999999987664322 23333344422 2 3445666666666442210 1111
Q ss_pred --------hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhc
Q 007842 83 --------HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAY 153 (587)
Q Consensus 83 --------~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~ 153 (587)
....+-..+..-+..++|..+..|..+++.++..--|...+..+++.+.+-..++ ....|..++..+|.++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic 158 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC 158 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 2233444555566788999999999999999876555555666666665544443 4468888999999999
Q ss_pred CCCChH----HHHHHHHHHHHhc--CCCChHHHHHHHHhHHHHHHhh----ccchhhhHHHHHHHHhhhCCchhHHHHHH
Q 007842 154 PSAPDI----LKTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATV----EPAHLKTDIMSIFEDLTQDDQDSVRLLAV 223 (587)
Q Consensus 154 ~~~~~~----~~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~l~~d~~~~vr~~a~ 223 (587)
++.+|+ ..+.++..+.+.. ..++..||-++..+|..-.... ..+.-.++++.......+.++..++.+|.
T Consensus 159 e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~ 238 (859)
T KOG1241|consen 159 EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAF 238 (859)
T ss_pred ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHH
Confidence 999986 2344555555443 4567889999888877754443 33555667777777777888889999999
Q ss_pred HHHHHHhhhcChh--h-hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------hCC---Ccc-----------cc
Q 007842 224 EGCAALGKLLEPQ--D-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-------VGP---EPT-----------RM 279 (587)
Q Consensus 224 ~~l~~l~~~~~~~--~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~-------~~~---~~~-----------~~ 279 (587)
.+|..|....... . ..+.++++-...+..++..|...+++....++.. .++ ... ..
T Consensus 239 ~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~ 318 (859)
T KOG1241|consen 239 QCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQ 318 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHh
Confidence 9999988654331 1 1233566666677788999999999999988752 111 111 12
Q ss_pred chHHHHHHhcC-------CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch
Q 007842 280 DLVPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352 (587)
Q Consensus 280 ~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
.++|.+++++. |++|..-++|-.+|.-++..++.+.. +.++|++.+.+++++|+-|.+++.+++.+-....+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 68898888773 34699999999999999998887654 79999999999999999999999999988765544
Q ss_pred hH---HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007842 353 DA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (587)
Q Consensus 353 ~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~ 425 (587)
.. .....+|.+..++.|++-.||..+.++++++++.+... .+...+++.+.+-++| .+++-..++.++..++
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLA 476 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Confidence 32 45677899999999999999999999999999876533 3344555555555444 5778788888888777
Q ss_pred HhhC---h--------hhhHHHHHHHHHHhcC--C-CchHHHHHHHHHHHHHHHHhChHHH------hhhhHHHHHhhcc
Q 007842 426 SQLG---V--------GFFDDKLGALCMQWLQ--D-KVYSIRDAAANNLKRLAEEFGPEWA------MQHITPQVLEMIN 485 (587)
Q Consensus 426 ~~~~---~--------~~~~~~l~~~l~~~l~--d-~~~~vr~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~ 485 (587)
+... + ..|.+.++..++.... | +..+.|.+|..+|+++++....+.+ ...++..+-+.+.
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS 556 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5431 1 1133344444444332 3 5678999999999999987655421 1112222222222
Q ss_pred -----CC----chhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhhhchH--HHH
Q 007842 486 -----NP----HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS--MVE 551 (587)
Q Consensus 486 -----d~----~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~--~~~ 551 (587)
-. -..+.-..+..|+.+...++++. ..+.++..+++.++. ++..+...+.-+++.++..+|.. .+.
T Consensus 557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym 636 (859)
T KOG1241|consen 557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM 636 (859)
T ss_pred HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH
Confidence 11 12344456667777776666543 568899999999887 57778999999999999998876 577
Q ss_pred hhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 552 KTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 552 ~~i~~~l~~-l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
+.+.|.|.. +.+-.+..|-..|..-.+.++.-+++
T Consensus 637 ~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 637 PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 889999988 55888999999999999999988764
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.91 E-value=2.9e-20 Score=191.40 Aligned_cols=503 Identities=16% Similarity=0.169 Sum_probs=356.5
Q ss_pred HHHHhcCc--cHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhc-cCCcHHHHHHHHHHhccccccCCCcchHhhhHHH
Q 007842 14 LIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (587)
Q Consensus 14 l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (587)
+.+.+.+. +...|..++..+-.+ ...|.+.. ...+-+.+. ..++.+.++...-.+..+.. .+++......+.
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~-~~~G~~~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--~~~~~~~l~~n~ 83 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYL-MMLGYDIS--FLFMEVIKLISSKDLELKRLGYLYLSLYLH--EDPELLILIINS 83 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHH-HHTT---G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTT--TSHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH-HHcCCCCc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--cchhHHHHHHHH
Confidence 34444444 777777777777654 34564432 333333332 23445555555545544443 223333444555
Q ss_pred HhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHH
Q 007842 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (587)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (587)
+.+-+.++++.+|-.|+++++.+. .++..+.+.+.+..
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~------------------------------------------~~~~~~~l~~~v~~ 121 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIR------------------------------------------TPEMAEPLIPDVIK 121 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-------------------------------------------SHHHHHHHHHHHHH
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhc------------------------------------------ccchhhHHHHHHHH
Confidence 555566777777777777777764 13344556777778
Q ss_pred hcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHH
Q 007842 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIV 247 (587)
Q Consensus 171 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~ 247 (587)
++.|++|.||+.|+.++..+....++ .....+.+.+..++.|.++.|+.+|+..+..+ ...+. ...+.+...+.
T Consensus 122 ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~ 198 (526)
T PF01602_consen 122 LLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILC 198 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhh
Confidence 88899999999999999999988532 22222789999999999999999999999888 22332 23445566666
Q ss_pred HhccCCcHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHH
Q 007842 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 325 (587)
Q Consensus 248 ~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 325 (587)
+.+.+.++..+...++.+..++..- .... ..+++.+..++.+.++.|+..++.++..+... ......+++.+.
T Consensus 199 ~~l~~~~~~~q~~il~~l~~~~~~~--~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~ 273 (526)
T PF01602_consen 199 QLLSDPDPWLQIKILRLLRRYAPME--PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLI 273 (526)
T ss_dssp HHHTCCSHHHHHHHHHHHTTSTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHhcccCC--hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHH
Confidence 6668888889888888887654321 1112 45888888888888899999999888866542 235577889999
Q ss_pred HhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHH
Q 007842 326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (587)
Q Consensus 326 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~ 405 (587)
+++.++++.+|..++..+..++...++... .....+..+..+++..+|..++..+..++..-. ...+++.+...
T Consensus 274 ~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~ 347 (526)
T PF01602_consen 274 KLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN----VKEILDELLKY 347 (526)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHH
T ss_pred HHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccc----hhhHHHHHHHH
Confidence 999999999999999999999876522221 333334444558889999999999988876332 34577777777
Q ss_pred hc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc
Q 007842 406 AE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484 (587)
Q Consensus 406 ~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 484 (587)
+. ..+..+|..++..++.++...... .+.+++.++.++......+...++..+..+....... ...++..+.+.+
T Consensus 348 l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~~~l 423 (526)
T PF01602_consen 348 LSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKKLIELL 423 (526)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHHHHH
T ss_pred HHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHHHHHHH
Confidence 74 447889999999999999877442 4567788888888888888999999998888764332 345677777766
Q ss_pred cC-CchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhc
Q 007842 485 NN-PHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT 562 (587)
Q Consensus 485 ~d-~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~ 562 (587)
.+ .++..+..+++.+|..+...+. . ....++..+.+...+.++.+|..++.++.++....+.....+.+.+.+..+.
T Consensus 424 ~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~ 502 (526)
T PF01602_consen 424 EDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLA 502 (526)
T ss_dssp TSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHH
T ss_pred HHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHh
Confidence 65 5678999999999999987765 2 4567788888888888999999999999999988776555568888888888
Q ss_pred C--CCCccHHHHHHHHHHHHHH
Q 007842 563 E--DPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 563 ~--d~d~~Vr~~a~~al~~l~~ 582 (587)
+ |.+.+||.+|..-+.-+..
T Consensus 503 ~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 503 TEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHS-SSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHcc
Confidence 7 8899999999988776543
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-19 Score=172.97 Aligned_cols=518 Identities=17% Similarity=0.153 Sum_probs=370.0
Q ss_pred hhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHH
Q 007842 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYI 127 (587)
Q Consensus 50 ~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 127 (587)
++++.. -.|....++..+.+.........| .+....+.|.+++.+. ..+..+|+......+.++.++...+ ....
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~-~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d--~~~~ 95 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHG-DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVD--PRPI 95 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccC--cchh
Confidence 455544 334455677777666544444334 4566778888877664 5688899999988888888876433 2233
Q ss_pred HHHHHHh---cCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchh-hhHH
Q 007842 128 PLVKRLA---AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-KTDI 203 (587)
Q Consensus 128 ~~l~~l~---~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l 203 (587)
+++..+. +.+...++.+...++..............+.+.+.++++.....-|..+...+..+....+.+.. ...+
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~ 175 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGF 175 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhH
Confidence 3333333 33455556555555554444443445567777888888888888888888888888877654332 3446
Q ss_pred HHHHHHhhhCCch-hHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccc
Q 007842 204 MSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD 280 (587)
Q Consensus 204 ~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ 280 (587)
+.-+.....|... ..|..+..+.......+++ +.+.-.++|.+.....|....||..+..+...+...+.....+ .
T Consensus 176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-~ 254 (569)
T KOG1242|consen 176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-L 254 (569)
T ss_pred HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-H
Confidence 6677777778765 4455566666666666654 3345556777788888999999999999999999888766544 4
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHh
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (587)
++|.++.-+.+..|..+.+++..++.++...+.. ...+.++|.+.+.+.|.+++||.++.+++.++++...... ...
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~ 333 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK 333 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH
Confidence 5555555555558999999999999888776553 5678899999999999999999999999999998886655 567
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhh--hhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhh
Q 007842 359 LLPIFLSLLKDEFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGF 432 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~ 432 (587)
++|.+...+.|....+.... ..|+ .+...+.... ...++|.+..-+.+.+..++..++..++.++..+. ...
T Consensus 334 ~ip~Lld~l~dp~~~~~e~~-~~L~~ttFV~~V~~ps-LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap 411 (569)
T KOG1242|consen 334 IIPTLLDALADPSCYTPECL-DSLGATTFVAEVDAPS-LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP 411 (569)
T ss_pred HHHHHHHHhcCcccchHHHH-Hhhcceeeeeeecchh-HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence 89999999999875554332 2222 2233333333 36788999998899888888888999999888773 233
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCC-chhHHHHHHHHHHHhhcccChHHH
Q 007842 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEIT 511 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~~~~ 511 (587)
|.+.++|-+...+.|..++||..+..+++.+.+..|...+ +..+|.+.+...+. ....|..+...++......|.+.
T Consensus 412 fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~- 489 (569)
T KOG1242|consen 412 FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK- 489 (569)
T ss_pred hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-
Confidence 5677888888888999999999999999999999988766 78899999887665 45688999999999998888764
Q ss_pred HhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhch--HHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007842 512 CSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ--SMVEKTIRPCLVELTEDPDVDVRFFATQA 576 (587)
Q Consensus 512 ~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~d~~Vr~~a~~a 576 (587)
...++|.++...... ++.+|...+..+..+-...+. +.+...+++.+.+-+.|.|+.+|..+.++
T Consensus 490 ~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 490 VEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred HHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 456677666654433 455787777666554333332 24556667766676679999998887765
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.90 E-value=5.3e-19 Score=173.84 Aligned_cols=575 Identities=14% Similarity=0.198 Sum_probs=386.2
Q ss_pred CCCccc-HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHH----HHhccccccC
Q 007842 5 DEPLYP-IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMA----EELGVFIPYV 78 (587)
Q Consensus 5 ~~~~~~-~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~----~~l~~l~~~~ 78 (587)
|||.-. +..+++.|.+.+.++..-|++.++-++.+++.++.. .++.-+-. .+...+.-|...+ -..+++.+..
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence 344442 678899999999999999999999998888877654 33322221 1222222221111 1234454433
Q ss_pred CC---cchHhhhHHHHhhhhc--chhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHHhcCCCCcchhhHHhhhHh
Q 007842 79 GG---VEHAHVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151 (587)
Q Consensus 79 ~~---~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~ 151 (587)
++ ....+.+.|.+.+.+. .+...++-.++..++.+...++.- .+...++..+..-..+.-..+|..++..++.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 32 1223445555544432 233448888888888776665531 1333344444333344456788889999999
Q ss_pred hcCCCChHHHHHHHHH-HHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhh---hCCchhHHHHHHHH
Q 007842 152 AYPSAPDILKTELRSI-YTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLT---QDDQDSVRLLAVEG 225 (587)
Q Consensus 152 ~~~~~~~~~~~~l~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~---~d~~~~vr~~a~~~ 225 (587)
+...++.+...+++.- +..+-+...+..-+...++++.++...|.. ...+.+.|.+.+.+ +.++++.|..++++
T Consensus 201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 9998888755555554 445555555555666788899998887763 46677889988888 66778999999999
Q ss_pred HHHHhhhcChh--hhhhchHHHHHHhc----------------------------------cCCcHHHHHHHHHHHHHHH
Q 007842 226 CAALGKLLEPQ--DCVAHILPVIVNFS----------------------------------QDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 226 l~~l~~~~~~~--~~~~~l~~~l~~~~----------------------------------~d~~~~vR~~a~~~l~~~~ 269 (587)
+..+...++.+ .+++.+...+.+.+ .|-+|.||++|++++..+.
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~I 360 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVI 360 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHH
Confidence 99999888764 23444444443322 1237999999999999887
Q ss_pred HHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--------H-----------H----HHHhHhHHH
Q 007842 270 EAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------E-----------L----AIQHILPCV 324 (587)
Q Consensus 270 ~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~-----------~----~~~~i~~~l 324 (587)
....+ ....+.+-|.++..+++.+.+|+.-.+.++-.+....++ + . -...++..+
T Consensus 361 sSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai 440 (1233)
T KOG1824|consen 361 SSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAI 440 (1233)
T ss_pred hccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHH
Confidence 64322 112345677788888999999999999888877765431 0 1 123455555
Q ss_pred HHhccCCcHHHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchhhH---Hhh
Q 007842 325 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLL---SQS 397 (587)
Q Consensus 325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~ 397 (587)
.+.+.+++...|..++..+..+....+. ......++|.+...+.|.+ ...+..++..+.......+++.+ .+.
T Consensus 441 ~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~ 520 (1233)
T KOG1824|consen 441 QKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSA 520 (1233)
T ss_pred HHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhh
Confidence 5666666767788888877777655432 2345678899998898864 45666677766666666665543 345
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---------hhhhHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHH
Q 007842 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------VGFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEE 466 (587)
Q Consensus 398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---------~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~ 466 (587)
+.|.+.....|+.+++-..++-....+++.+. ...+...+....++.+ +|.+.+||+.|+.+++.++..
T Consensus 521 Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~ 600 (1233)
T KOG1824|consen 521 LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIAN 600 (1233)
T ss_pred hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 56667777899999999888888888877652 1223333444444444 688999999999999999999
Q ss_pred hChHH--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 467 FGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 467 ~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
+|.-. .....+|.+.+-+. +...|.+|++++..++.. +........++|.+...+.-.....|.+++.++..+
T Consensus 601 fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L 678 (1233)
T KOG1824|consen 601 FGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKL 678 (1233)
T ss_pred HhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88421 22444555554443 567899999999998752 333445678899999888888889999999999999
Q ss_pred hhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 542 IPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 542 ~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
...++.. ...+.++.-+-.|.+++|-.|...|...|..+..
T Consensus 679 ~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 679 VKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred HHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 8877544 3334555666667889999998888888777653
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.3e-19 Score=169.02 Aligned_cols=512 Identities=16% Similarity=0.160 Sum_probs=363.1
Q ss_pred cCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCC--cHHHHHHHHHHhccccccCCCcc-hHhhhHHHHhhhh
Q 007842 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD--DDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLC 95 (587)
Q Consensus 19 ~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~l~ 95 (587)
.+....+|-.-+.+...+-..-|.+ ....+.|...+.+.. ++.+|....-..|.++..+.+.+ -...++..+..-+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~-~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQ-NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHH-HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence 3445566666666555444444433 334778877764432 34455444433454444322222 2233444455555
Q ss_pred cchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--HHHHHHHHHHHhcC
Q 007842 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ 173 (587)
Q Consensus 96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~~~~l~~~l~~l~~ 173 (587)
..+.+.+|++...++..+........ ...+++.+.++.+.+....|..+...+..+......+ ....++..+....+
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII 184 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence 67889999999999998766554332 3456777777777666667777776666666655433 44567777777888
Q ss_pred CCChHH-HHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc
Q 007842 174 DDMPMV-RRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS 250 (587)
Q Consensus 174 d~~~~v-r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 250 (587)
|..... |+.+..+.......+++ +.+.-.++|.+..-..|....||.++..+...+.+.++.......+.+.+..+.
T Consensus 185 dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~ 264 (569)
T KOG1242|consen 185 DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL 264 (569)
T ss_pred ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH
Confidence 875554 44677777778888774 233334445555555788899999999999999998887644444444444444
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc
Q 007842 251 QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~ 328 (587)
. ..|+-+.++++.+|.++...+.. .....++|.+.+.+.|..++||+++..++..++..+.+..+ ..++|.+...+
T Consensus 265 ~-~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l 342 (569)
T KOG1242|consen 265 E-AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDAL 342 (569)
T ss_pred H-HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHh
Confidence 4 49999999999999888776543 23457999999999999999999999999999999887664 77889999999
Q ss_pred cCCcHHHHHHHHHHHH-ccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc-hh---hHHhhHHHHHH
Q 007842 329 SDSSQHVRSALASVIM-GMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID---LLSQSLLPAIV 403 (587)
Q Consensus 329 ~d~~~~vr~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~---~~~~~~l~~l~ 403 (587)
.|++-++..+.-.... .+...+.. ..+..++|++...+.+.+...+..++..+..++.... +. .+.+.++|.+.
T Consensus 343 ~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 343 ADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred cCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 9998666655443322 23333322 4467899999999999999999999999999998773 22 45678888999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHhChHHHhhhhHHHHHh
Q 007842 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHITPQVLE 482 (587)
Q Consensus 404 ~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 482 (587)
..+.|..+.+|..+.++++.+.+..|...| +...|.+...+.+.... -|..++..++..+...+.+.+ ..++|.+..
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~-~~~~~~~~a 499 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV-EDILPEILA 499 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH-HHHHHHHHH
Confidence 989999999999999999999999998877 77888888888765554 478888899999888877643 445555544
Q ss_pred hc--cCCchhHHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHH
Q 007842 483 MI--NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 483 ~l--~d~~~~~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~ 537 (587)
.. ...++.+|...++.+.-+...++.. .+...+++.+.+.+.|.++.+|..+.++
T Consensus 500 ~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 500 NASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred HHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 32 3346678888887777766555543 3567889999999999999998887665
No 19
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.88 E-value=1.6e-18 Score=162.88 Aligned_cols=548 Identities=17% Similarity=0.170 Sum_probs=377.0
Q ss_pred hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc--CCcHHHHHHHHHHhccccccCCC--cchHhhhHHHHhh
Q 007842 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLET 93 (587)
Q Consensus 18 l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ 93 (587)
+.+.|+=+|.-..++.+..+.++|-+ +++||+.... ..+.+.|..-.++..+++.++|. -.|...++..+.+
T Consensus 290 i~~~deYVRnvt~ra~~vva~algv~----~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~ 365 (975)
T COG5181 290 ITSKDEYVRNVTGRAVGVVADALGVE----ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISK 365 (975)
T ss_pred cccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHH
Confidence 45778889999999999999998855 8899997743 23556665555555444444442 2356678888999
Q ss_pred hhcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH----HHHHHHH
Q 007842 94 LCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS 166 (587)
Q Consensus 94 l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~ 166 (587)
++.|+...||--++.++..+++..+|- ++...+.|+......+-. ..-.+.++..+.+.+..+|+ .-.+...
T Consensus 366 ~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tre~m~ 444 (975)
T COG5181 366 LLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTREHME 444 (975)
T ss_pred HhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhHHHHHH
Confidence 999999999999999999999987764 444456666554444321 11233445556667777776 3356778
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHH------hhhCCchhHHHHHHHHHHHHhhhcChhh
Q 007842 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFED------LTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (587)
Q Consensus 167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~------l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
++....++++.+.++....... .+...+. ..+.+.+.|.+.+ ...|... .+....+-..+++..+
T Consensus 445 iv~ref~spdeemkk~~l~v~~-~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~--~k~v~~ttvilAk~~g--- 518 (975)
T COG5181 445 IVFREFKSPDEEMKKDLLVVER-ICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRS--YKQVVLTTVILAKMGG--- 518 (975)
T ss_pred HHHHHhCCchhhcchhHHHHHH-HHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccc--cceeehhHHHHHHHcC---
Confidence 8888888888777765544333 3333222 2233333333221 1111100 0011122223333333
Q ss_pred hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC------------------------------------------
Q 007842 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE------------------------------------------ 275 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~------------------------------------------ 275 (587)
.+.+..-+.....|+....|..++.+...+...+|..
T Consensus 519 -~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r 597 (975)
T COG5181 519 -DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFR 597 (975)
T ss_pred -ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhc
Confidence 2344455555566666666666666666555544321
Q ss_pred --ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh---hCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 007842 276 --PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI---LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (587)
Q Consensus 276 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 350 (587)
.....++..+++.++++.+.||..++..++.++.. +|+.....++-..+.+.+....++|--..+.++..+....
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 01123666677888999999999999988876654 4565555666667778888889999999888888877655
Q ss_pred chh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh----chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 007842 351 GKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (587)
Q Consensus 351 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~ 423 (587)
+-. .....++|.+...|++....|..+.+..++.++... |...+. .+.-.+.+.+++-+..+|.++.+.++.
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM-RIcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM-RICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 422 235678888999999998999999998888887543 333332 223334556677888999999999999
Q ss_pred HHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 424 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
+++.+|+. .++..+++.|+-.+...|....-+++-..+..|+- .++|.++.-...|+..++...++++..+.
T Consensus 757 Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 757 ISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred HHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 99999974 46677888888888888888888888888887763 47888888888899999999999999999
Q ss_pred cccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842 504 PVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQ 578 (587)
Q Consensus 504 ~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~ 578 (587)
+..|... +...+.|.+.+.+.|.++.-|..+...+.-+.-..... ...-+++..|..=.-|+.|.|......+++
T Consensus 829 eyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e 908 (975)
T COG5181 829 EYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGME 908 (975)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHH
Confidence 9888643 56778999999999999999999999998887554332 222233444444346889999999999999
Q ss_pred HHHHhhcc
Q 007842 579 SIDHVMMS 586 (587)
Q Consensus 579 ~l~~~~~~ 586 (587)
.+.+.+|+
T Consensus 909 ~~~~~lg~ 916 (975)
T COG5181 909 SFATVLGS 916 (975)
T ss_pred HHHHHhcc
Confidence 99988875
No 20
>PRK09687 putative lyase; Provisional
Probab=99.87 E-value=4.3e-20 Score=168.50 Aligned_cols=255 Identities=20% Similarity=0.176 Sum_probs=197.8
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhH
Q 007842 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359 (587)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 359 (587)
.-.+.+...+.|++..||..++.+|..+.. +.+++.+..++.|+++.+|..++.+|+++...-. .....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a 91 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNV 91 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHH
Confidence 345666777788888899998888877643 4456777778888889999999999888864211 12345
Q ss_pred HHHHHHh-hcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHH
Q 007842 360 LPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (587)
Q Consensus 360 ~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 438 (587)
+|.+..+ ++|+++.||..++.+|+.+..... ......++.+...+.|++|+||..++.+++.+. .+..+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHH
Confidence 6777665 788889999999999888753211 111345556667788999999999999886542 23467
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHH
Q 007842 439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 518 (587)
Q Consensus 439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~ 518 (587)
+.+...+.|+++.||..|+.+|+.+. .+ .+...+.|...+.|+++.+|..|+.+|+.+.. ...+|.
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~ 227 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSV 227 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHH
Confidence 88889999999999999999999882 11 23567888888999999999999999999764 578899
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007842 519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS 579 (587)
Q Consensus 519 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~d~~Vr~~a~~al~~ 579 (587)
+++.+++++ +|..++.+|+.+... ..+|.|.+++. ++|..|+..|..++.+
T Consensus 228 Li~~L~~~~--~~~~a~~ALg~ig~~--------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 228 LIKELKKGT--VGDLIIEAAGELGDK--------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHcCCc--hHHHHHHHHHhcCCH--------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 999999866 788999999998763 68999999875 8899999999999875
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.86 E-value=9.9e-20 Score=194.87 Aligned_cols=275 Identities=22% Similarity=0.255 Sum_probs=221.4
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHh
Q 007842 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 321 (587)
.++.+...++|+++.||..|++.|+.+. ....++.+...++|+++.||..|+.+|..+.+.... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 4566778889999999999999999865 245788999999999999999999999888654332 2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 401 (587)
+.+...++++++.||.+++.+|+.+... . .+.+...+.|.++.||..++.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 4566777889999999999999887521 1 1346678999999999999999998632 123
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 007842 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481 (587)
Q Consensus 402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 481 (587)
+...+.|+++.+|..++..|+.+...- ....+.+..+++|+++.||.+|+.+|+.+... ..+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 456789999999999999998875421 11256778889999999999999999887421 23345677
Q ss_pred hhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHh
Q 007842 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 561 (587)
Q Consensus 482 ~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l 561 (587)
..+.|++|.+|..|+.+|+.+.. +..++.+..+++|+++.||..++.+|+.+.. .+...+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-------~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-------DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-------CHHHHHHHHHH
Confidence 88999999999999999998753 4567899999999999999999999999721 13567888888
Q ss_pred cCCCCccHHHHHHHHHHH
Q 007842 562 TEDPDVDVRFFATQAIQS 579 (587)
Q Consensus 562 ~~d~d~~Vr~~a~~al~~ 579 (587)
++|.|++||..|.+||..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999863
No 22
>PTZ00429 beta-adaptin; Provisional
Probab=99.86 E-value=1.5e-16 Score=162.31 Aligned_cols=499 Identities=14% Similarity=0.103 Sum_probs=325.5
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchHhhhH
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~ 88 (587)
++.+|.+.|++.+...|..+++.+-.. ..+|.+. ..+.|-+.... .++-++++.+.-.+.++++ ..++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~Dv--S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--~~pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIAN-MTMGRDV--SYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--LQPEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCCc--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--cChHHHHHHH
Confidence 467777888888877777777766543 3455332 23444443332 3445666666555555543 1233333445
Q ss_pred HHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHH
Q 007842 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (587)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 168 (587)
+.|.+-+.|+||.+|-.|++.++.+.. ++....+.+.+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~------------------------------------------~~i~e~l~~~l 145 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV------------------------------------------SSVLEYTLEPL 145 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc------------------------------------------HHHHHHHHHHH
Confidence 666666667777777777776665421 22344566677
Q ss_pred HHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh-hhhchHHHHH
Q 007842 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV 247 (587)
Q Consensus 169 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~ 247 (587)
..++.|.+|.||+.|+-++.++....++-.....+.+.+..++.|.++.|...|+.++..+.+..+... .....+..+.
T Consensus 146 kk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll 225 (746)
T PTZ00429 146 RRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLV 225 (746)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 778889999999999999999877653222234567777788899999999999998888876544210 1111222233
Q ss_pred HhccCCcHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---HHHhHhHH
Q 007842 248 NFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPC 323 (587)
Q Consensus 248 ~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~ 323 (587)
..+.+-++..+...++.+.. ..+. +.....++..+...++..++.|..+|++++..+....+++. ....+.+.
T Consensus 226 ~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~p 302 (746)
T PTZ00429 226 YHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTA 302 (746)
T ss_pred HHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHH
Confidence 33344444555555555533 2221 11223577778888888999999999999888876544332 12234455
Q ss_pred HHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHH
Q 007842 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 403 (587)
+..+ ..+++.+|..++..+..+....+ ..+... +..+.-..+|. ..||...++.|..++..-. ...++..+.
T Consensus 303 Lv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~-~~~Ff~~~~Dp-~yIK~~KLeIL~~Lane~N----v~~IL~EL~ 374 (746)
T PTZ00429 303 LLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN-LDSFYVRYSDP-PFVKLEKLRLLLKLVTPSV----APEILKELA 374 (746)
T ss_pred HHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH-HHhhhcccCCc-HHHHHHHHHHHHHHcCccc----HHHHHHHHH
Confidence 5555 45678899999998877765442 223222 34444455665 4589999998888765322 245677788
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh
Q 007842 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483 (587)
Q Consensus 404 ~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 483 (587)
++..+.+..++..++.+++.++..+.. ..+.++..+..++.+... +...++.++..+.+.+.... +++.+...
T Consensus 375 eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~----il~~L~~~ 447 (746)
T PTZ00429 375 EYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL----MLDTLVTD 447 (746)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH----HHHHHHHh
Confidence 888899999999999999999976543 456788888888876554 44467888999988776542 34444432
Q ss_pred c---cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHH
Q 007842 484 I---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 560 (587)
Q Consensus 484 l---~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~ 560 (587)
+ .-.++..|.+.++.+|..+..+.. ...++..+++.+.+.++.||...+.+..++....+++ ....+...+..
T Consensus 448 ~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~ 523 (746)
T PTZ00429 448 YGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLET 523 (746)
T ss_pred hcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHH
Confidence 2 123677899999999999876543 2456655666667788999999999999998776543 23455666655
Q ss_pred hcC-CCCccHHHHHHHHH
Q 007842 561 LTE-DPDVDVRFFATQAI 577 (587)
Q Consensus 561 l~~-d~d~~Vr~~a~~al 577 (587)
+.+ |.++|||.+|.-=.
T Consensus 524 ~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 524 VTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHhcCCChhHHHHHHHHH
Confidence 544 67789999998543
No 23
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.85 E-value=8.3e-16 Score=143.79 Aligned_cols=508 Identities=12% Similarity=0.093 Sum_probs=342.0
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcH-HHHHHHHHHhccccccCCCcchH----hhh
Q 007842 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDD-EVLLAMAEELGVFIPYVGGVEHA----HVL 87 (587)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~-~v~~~~~~~l~~l~~~~~~~~~~----~~l 87 (587)
.+..|+|..+.-..+|...++.|+..--|...|++++..+..-. +..+ ...+.....+|.......-+... ..+
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il 178 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVIL 178 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHH
Confidence 45668999999999999999999988888888888888777633 3333 34455555666665432211111 122
Q ss_pred HHHHhhh-hcchhhHHHHHHHHHHHHHHh----hcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhh----cCCCCh
Q 007842 88 LPPLETL-CTVEETCVRDKAVESLCRIGS----QMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YPSAPD 158 (587)
Q Consensus 88 ~~~l~~l-~~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~----~~~~~~ 158 (587)
+.+..-. -..++..||.+|+.+|..-+. .+..+.-.+.+++.+.+..+.++.....++.+.+.++ ++..++
T Consensus 179 ~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ 258 (858)
T COG5215 179 FAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS 258 (858)
T ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 235677899999999887322 2333444567777777777777777776666655543 334444
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--------c-----------hhhhHHHHHHHHhhh-------
Q 007842 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--------A-----------HLKTDIMSIFEDLTQ------- 212 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--------~-----------~~~~~l~~~l~~l~~------- 212 (587)
...+.+..+....+.+++.+|...+.+....++..--+ + .....++|-+.+++.
T Consensus 259 ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~ 338 (858)
T COG5215 259 YMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYY 338 (858)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 45566777777889999999999988888776654211 0 012335666655542
Q ss_pred CCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhc
Q 007842 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLL 289 (587)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l 289 (587)
+++|++-.+|..+|.-++...++. ....++.++.+-+..++|.-|..++.++|.+...-... ...++.+|.+....
T Consensus 339 ~DdWn~smaA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m 417 (858)
T COG5215 339 GDDWNPSMAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM 417 (858)
T ss_pred ccccchhhhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence 345678888888888888877765 34448888899999999999999999999987632211 12346788888888
Q ss_pred CCChHHHHHHHHHhHHHHHhhhCH----H-----------------------------------------------HHHH
Q 007842 290 RDNEAEVRIAAAGKVTKFCRILNP----E-----------------------------------------------LAIQ 318 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~~----~-----------------------------------------------~~~~ 318 (587)
.|+.-.|+..++.+++.++.++.. . .+..
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ 497 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL 497 (858)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH
Confidence 888888888888889888875421 0 0111
Q ss_pred hHhHHHHHh--ccCCcHHHHHHHHHHHHccccccchhH------HHHhHHHHHHH-------hhc--CC--ChHHHHHHH
Q 007842 319 HILPCVKEL--SSDSSQHVRSALASVIMGMAPLLGKDA------TIEQLLPIFLS-------LLK--DE--FPDVRLNII 379 (587)
Q Consensus 319 ~i~~~l~~~--~~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~-------~l~--d~--~~~vr~~a~ 379 (587)
.++..+.+. ..+.+...|.++.++|+.+....+... +...+...+.. .+. |. ..++....+
T Consensus 498 ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~ 577 (858)
T COG5215 498 AILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYI 577 (858)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 222222221 125566789999999998877664321 11112111111 111 11 256777778
Q ss_pred Hhhhhhhhhhch--hhHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhCh--hhhHHHHHHHHHHhcCCCchHHHH
Q 007842 380 SKLDQVNQVIGI--DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRD 454 (587)
Q Consensus 380 ~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~ 454 (587)
..|..++...+. +...+.++..+..+++..+ ..+-..+.-+++.++..++. +.+.+.++|.+...++..+..|-.
T Consensus 578 ~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~ 657 (858)
T COG5215 578 GVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLN 657 (858)
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHH
Confidence 888888877765 3444667788888777664 34445577778888887754 456788999999999999999999
Q ss_pred HHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc--hhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhh
Q 007842 455 AAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINA 522 (587)
Q Consensus 455 ~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~ 522 (587)
.|+..++.+.+.+|.++ +.+.++..+.+.+.+++ ..++-+.+.++|.++..+|..+ +.+.++-.+...
T Consensus 658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa 731 (858)
T COG5215 658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999886 45778888888888774 5688899999999999888765 455555555443
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.84 E-value=5.2e-18 Score=174.70 Aligned_cols=470 Identities=18% Similarity=0.141 Sum_probs=336.5
Q ss_pred ccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (587)
Q Consensus 9 ~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l 87 (587)
.-+...++.+.|.|...|.-+--.+..+.. ..++ ...-.+..+.. ..++++.+|..+.++++++. .++..+.+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~-~~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l 115 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLH-EDPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPL 115 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTT-TSHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-cchh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHH
Confidence 446777888889998888877666655432 2222 12234444444 45667778877788888874 46888899
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---HHHHHH
Q 007842 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTEL 164 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l 164 (587)
.+.+.+++.|+++.||+.|+.++.++.+.. ++.+...+.|.+..+..|.+..++..|+.++..+ ...++ .....+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~ 193 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKL 193 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHH
Confidence 999999999999999999999999998874 3333333788888888888888898899888777 22222 234566
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhh--hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK--TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (587)
...+...+.+++|+.+..+++.+..++..- +... ..+++.+..++++.++.|+..++..+..+... ......+
T Consensus 194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~--~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~ 268 (526)
T PF01602_consen 194 IRILCQLLSDPDPWLQIKILRLLRRYAPME--PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKA 268 (526)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTTSTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHH
T ss_pred HHHhhhcccccchHHHHHHHHHHHhcccCC--hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhh
Confidence 666667779999999999999888776542 2222 46788888888888889988888887765442 2246678
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhH
Q 007842 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 322 (587)
.+.+..++.++++.+|..+++.+..++...++... .....+..+..|++..+|..++..+..++.. + -...+++
T Consensus 269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~-n~~~Il~ 342 (526)
T PF01602_consen 269 INPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE---S-NVKEILD 342 (526)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---H-HHHHHHH
T ss_pred HHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc---c-chhhHHH
Confidence 88899999999999999999999988765311111 2222223334478899999999988888753 2 2255677
Q ss_pred HHHHhccCC-cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842 323 CVKELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 323 ~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 401 (587)
.+.+.+.+. +..+|..++..++.++..++.. .+..++.+.+++......+...++..+..+....... ....+..
T Consensus 343 eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~ 418 (526)
T PF01602_consen 343 ELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKK 418 (526)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHH
T ss_pred HHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHH
Confidence 777777444 7789999999999998776432 3456788888888877788888888888877553322 2445666
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHHHHhhCh-hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 007842 402 IVELAED-RHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479 (587)
Q Consensus 402 l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 479 (587)
+.+.+.+ .++.++..++..+|..+..... . ....++..+...+.+.+..||..++.++.++....+.....+.+.+.
T Consensus 419 L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~ 497 (526)
T PF01602_consen 419 LIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQF 497 (526)
T ss_dssp HHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHH
Confidence 6666655 6678888899999988877654 3 45567777777778888889999999999988877654344567777
Q ss_pred HHhhcc--CCchhHHHHHHHHHHHh
Q 007842 480 VLEMIN--NPHYLYRMTILRAISLL 502 (587)
Q Consensus 480 l~~~l~--d~~~~~R~~a~~~l~~l 502 (587)
+..+.+ +.+..+|..|.+.+.-+
T Consensus 498 ~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 498 LLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHH
Confidence 777776 77888888888776544
No 25
>PRK09687 putative lyase; Provisional
Probab=99.84 E-value=8.1e-19 Score=160.15 Aligned_cols=255 Identities=15% Similarity=0.080 Sum_probs=202.2
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 320 (587)
.-.+.+...+.|++..||..++..|+.+. ....++.+..+++|+++.+|..++.+|+.+...-.. ....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a 91 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNV 91 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHH
Confidence 34555667778999999999999998764 256788888889999999999999999998642111 2356
Q ss_pred hHHHHHh-ccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHH
Q 007842 321 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (587)
Q Consensus 321 ~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l 399 (587)
++.+..+ .+|+++.||..++.+|+.++..-. .....+++.+...+.|.++.||..++.+|+.+.. +..+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHH
Confidence 7777766 789999999999999999863221 1123456667778889999999999999987653 4568
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 007842 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479 (587)
Q Consensus 400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 479 (587)
+.+..+++|++|.+|..++..++.+.. + .+...+.+...+.|+++.||..|+.+|+.+.. ...+|.
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~ 227 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSV 227 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHH
Confidence 888899999999999999999988721 1 23467788889999999999999999988532 357888
Q ss_pred HHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC-CCChhHHHHHHHHHHH
Q 007842 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQS 540 (587)
Q Consensus 480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~ 540 (587)
+.+.+++++ +|..++.++|.+.. +..+|.+.++++ +++..||..+.++|.+
T Consensus 228 Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 228 LIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 989888876 67789999999876 578899999986 8899999999888764
No 26
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.84 E-value=1.1e-15 Score=142.87 Aligned_cols=567 Identities=13% Similarity=0.057 Sum_probs=371.7
Q ss_pred HHHHH-hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccC--CcHHHHHHHHHHhcc-cccc----------
Q 007842 13 VLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND--DDDEVLLAMAEELGV-FIPY---------- 77 (587)
Q Consensus 13 ~l~~~-l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~--~~~~v~~~~~~~l~~-l~~~---------- 77 (587)
-|.+. +=|+|+..|+.|-..|.+++... ....+-.+.+ ..| +.++.|..++-.|.+ +...
T Consensus 8 ~l~~n~vLspD~n~rl~aE~ql~~l~~~d-----F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 8 CLGKNHVLSPDPNARLRAEAQLLELQSGD-----FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred HHHhcccCCCCCCccccHHHHHHHhcccc-----HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 34444 45788889999988887764321 1233334444 223 344666666555533 2110
Q ss_pred --CC-CcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHH-HhcCCCCcchhhHHhhhHhhc
Q 007842 78 --VG-GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR-LAAGEWFTARVSACGLFHIAY 153 (587)
Q Consensus 78 --~~-~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~~~~~~~r~~a~~~l~~~~ 153 (587)
+| ..+...++-......+.+++|..-..|...++.++..--|...+..+...+.. .+.......+..++.+++..+
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 00 01122344444455667889999999999999998865555556655555544 444446677888999999998
Q ss_pred CCCChH-----HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHh----hccchhhhHHHHHHHHhhhCCchhHHHHHH
Q 007842 154 PSAPDI-----LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAAT----VEPAHLKTDIMSIFEDLTQDDQDSVRLLAV 223 (587)
Q Consensus 154 ~~~~~~-----~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~ 223 (587)
....|+ +..-++.+.. .+-+.++..||-+++.+|..-+.. +..+.-.++++.......+.++.++..++.
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aaf 242 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAF 242 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHH
Confidence 888775 2223334333 234556788999998888773332 223556677888877778888889999988
Q ss_pred HHHHHHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH----------hCCCc---------cccch
Q 007842 224 EGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA----------VGPEP---------TRMDL 281 (587)
Q Consensus 224 ~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~----------~~~~~---------~~~~l 281 (587)
.++..+.....+ .-..+-+..+..+.+.+++.+|...+++....++.. +++.. ...++
T Consensus 243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dv 322 (858)
T COG5215 243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADV 322 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHH
Confidence 888877643222 112233455566778899999999999999888863 11100 02358
Q ss_pred HHHHHHhcC-------CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh-
Q 007842 282 VPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD- 353 (587)
Q Consensus 282 ~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~- 353 (587)
+|.+++++. +++|++..+|..+|.-++...|+... ..++.++.+-+..++|.-|.+++.+++.+.......
T Consensus 323 lP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~ 401 (858)
T COG5215 323 LPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC 401 (858)
T ss_pred HHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence 888888873 35699999999999999998887654 558899999999999999999999999887654332
Q ss_pred --HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 007842 354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~ 427 (587)
.+.++.+|.+...+.|..--|+..++++++.+...+... ............-+.| ++++-..+...+..++.+
T Consensus 402 lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 402 LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDH 480 (858)
T ss_pred HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHh
Confidence 246778899999999999999999999999998765422 1111111111111222 222222222222233322
Q ss_pred hCh------h---hhHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHhChHH------HhhhhHHHH-------Hhh
Q 007842 428 LGV------G---FFDDKLGALCMQW--LQDKVYSIRDAAANNLKRLAEEFGPEW------AMQHITPQV-------LEM 483 (587)
Q Consensus 428 ~~~------~---~~~~~l~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l-------~~~ 483 (587)
+.+ . .|...++..++.. +.+++.+.|.++..+|+.++....... +.+.+...+ .+.
T Consensus 481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~ 560 (858)
T COG5215 481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI 560 (858)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 211 1 1333444444433 257888899999999999986443321 111111111 111
Q ss_pred c--cCC--chhHHHHHHHHHHHhhcccCh--HHHHhhHHHHHHhhcCCC-ChhHHHHHHHHHHHhhhhhchH--HHHhhH
Q 007842 484 I--NNP--HYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS--MVEKTI 554 (587)
Q Consensus 484 l--~d~--~~~~R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~i 554 (587)
+ .|. -..+..+.+..+..+....++ +...+.++..+++.+... ...+-.-+..+++.+...+++. .+.+.+
T Consensus 561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~f 640 (858)
T COG5215 561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKF 640 (858)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 111 245667778888888877776 456677999999988776 4556677788888888877664 678899
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 555 RPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 555 ~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
.|.+.+-++..|.-|-..|..-++.++..+|.
T Consensus 641 iPyl~~aln~~d~~v~~~avglvgdlantl~~ 672 (858)
T COG5215 641 IPYLTRALNCTDRFVLNSAVGLVGDLANTLGT 672 (858)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence 99999988999999999999999999988764
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.83 E-value=2.5e-18 Score=184.18 Aligned_cols=274 Identities=20% Similarity=0.187 Sum_probs=218.4
Q ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchH
Q 007842 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (587)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~ 282 (587)
-++.+...+.|+++.||..|+..|+.+.. +..++.|...++|+++.||..++.+|+.+....+ -.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PA 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------ch
Confidence 34566677889999999999999987642 4467888888999999999999999998865322 23
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHH
Q 007842 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 362 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 362 (587)
+.+...++++++.||..++.+|+.+.. +. ...+...+.|+++.||..++.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 566777889999999999999988642 11 1345668899999999999999988642 134
Q ss_pred HHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHH
Q 007842 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 442 (587)
+..++.|++++||..++.+|+.+...- ...++.+..+++|+++.+|..++..|+.+.. + +...+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---~----~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC---P----PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC---c----chhHHHHH
Confidence 567899999999999999999876531 2236778888999999999999999987632 1 12335577
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhh
Q 007842 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA 522 (587)
Q Consensus 443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~ 522 (587)
..+.|++|.||.+|+.+|+.+.. +..++.+..+++|+++.||..++.+|+.+. +. +...+.+.+.
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~----~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD----PAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC----HHHHHHHHHH
Confidence 88899999999999999987642 345688889999999999999999999972 11 4567888899
Q ss_pred cCCCChhHHHHHHHHHH
Q 007842 523 SKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 523 l~d~~~~vR~~~~~~l~ 539 (587)
++|+++.||..+.++|.
T Consensus 879 l~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 879 LTDSDADVRAYARRALA 895 (897)
T ss_pred HhCCCHHHHHHHHHHHh
Confidence 99999999999999986
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.8e-16 Score=148.01 Aligned_cols=379 Identities=16% Similarity=0.194 Sum_probs=294.1
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhh----hCCchhHHHHHHHHHHHHhhhcChh--hhhhc
Q 007842 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT----QDDQDSVRLLAVEGCAALGKLLEPQ--DCVAH 241 (587)
Q Consensus 168 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 241 (587)
+...+.|...+-|++++.-+.++.+.+-.....+.+-..+..++ .......|++++-++...+-.++.+ .+...
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 44567788889999999999999888766554455555555444 4455567888888887776666653 36777
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----HH
Q 007842 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----EL 315 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~ 315 (587)
++|-+..+++|++.+||..|++.+-++++....+. ..+.+...+.++..|.+..||.+ ++.+..+.+.+-. ..
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcccccccc
Confidence 88889999999999999999999999999876543 34567888888999999999876 4556665554322 23
Q ss_pred HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh
Q 007842 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (587)
Q Consensus 316 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (587)
..+.++|.+...+.+.++..|....+++..+-..-+-+. +.+.+++.+.+++.|++++||..+-.+++.+...+..+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 357889999999999999999999999988766655443 467889999999999999999999999998887765431
Q ss_pred ---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh--HHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHh
Q 007842 394 ---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEF 467 (587)
Q Consensus 394 ---~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~ 467 (587)
-.+.+++.+..-+.++++.++..++..+..+.+..|++.. .+.++..++.++.|+.. .++..+...-+.+.+.+
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 1256677777778889999999999999999988776543 34556666777777776 58877777666666555
Q ss_pred ChHHH-----hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 007842 468 GPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (587)
Q Consensus 468 ~~~~~-----~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~ 540 (587)
+.+.. ...++..+...+.+.....|.+++.++..+....+.+. +...+.+.+++.+.|++..|-..++..+..
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 44322 24678888889999999999999999999988777654 367899999999999999999999999999
Q ss_pred hhhhhch
Q 007842 541 LIPIVDQ 547 (587)
Q Consensus 541 l~~~~~~ 547 (587)
++..-..
T Consensus 404 i~~s~~~ 410 (675)
T KOG0212|consen 404 ICSSSNS 410 (675)
T ss_pred HhcCccc
Confidence 9876433
No 29
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=5e-17 Score=164.19 Aligned_cols=309 Identities=18% Similarity=0.207 Sum_probs=225.4
Q ss_pred HHHHHHHHhcC-CCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc------c
Q 007842 126 YIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------A 197 (587)
Q Consensus 126 l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~------~ 197 (587)
+++++.+.... .....|..|+.++..+....+.+ ..+.++|++..+..|+.+.||..|+.++..+...+.+ .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 45555444433 24567788888888888888766 6688999999999999999999999999888877654 2
Q ss_pred hhhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH--hccCCcHHH--HHHHHHHHHHHHHHh
Q 007842 198 HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN--FSQDKSWRV--RYMVANQLYELCEAV 272 (587)
Q Consensus 198 ~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--~~~d~~~~v--R~~a~~~l~~~~~~~ 272 (587)
.+.++++|.+..+..| ....||.+.+..|+.++.....- . .....+.+ ..+|++.+. ...--..++.+
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF--l-e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L---- 575 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF--L-ELTQELRQAGMLNDPNSETAPEQNYNTELQAL---- 575 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH--H-HHHHHHHhcccccCcccccccccccchHHHHH----
Confidence 4778899999999988 56788988888888888754320 1 01111111 123333320 00000001111
Q ss_pred CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch
Q 007842 273 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352 (587)
Q Consensus 273 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
...+-.....++.|+++.||++-++.+..++..+|.+.-.+.+++.+...++|++|..|.+..+.+..++-.+|.
T Consensus 576 -----~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~ 650 (1431)
T KOG1240|consen 576 -----HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW 650 (1431)
T ss_pred -----HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee
Confidence 112445567788999999999999999999999998876678999999999999999999999999999999998
Q ss_pred hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch-hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh
Q 007842 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (587)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~ 431 (587)
....+.++|.+.+.+.|.++.|-..|+.++..+++.--. +.....++.....++-++|-.+|.+++..|..+++.++..
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 877889999999999999999999999999998864221 1112334445555778999999999999999999888755
Q ss_pred hhHHHHHHHHHHhcC
Q 007842 432 FFDDKLGALCMQWLQ 446 (587)
Q Consensus 432 ~~~~~l~~~l~~~l~ 446 (587)
...-.+.|++-.++.
T Consensus 731 dvyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 731 DVYCKLMPLIRPFLE 745 (1431)
T ss_pred hheEEeehhhHHhhh
Confidence 444445555544444
No 30
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.6e-14 Score=149.72 Aligned_cols=499 Identities=19% Similarity=0.208 Sum_probs=291.7
Q ss_pred HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh----HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (587)
...+...|..++.+++|+.|+++...|-.+.++++... -.+++..-+.++..|+++-.+-.|..-++..|+-.+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 34567778889999999999999999999988887311 12223333344444443333333333344433333222
Q ss_pred HHHHHHHH---------------------------------------------------------HHHhcCC-CChHHHH
Q 007842 160 LKTELRSI---------------------------------------------------------YTQLCQD-DMPMVRR 181 (587)
Q Consensus 160 ~~~~l~~~---------------------------------------------------------l~~l~~d-~~~~vr~ 181 (587)
.++.++.- +.++.++ ..+.-|+
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 22222222 2222222 2344566
Q ss_pred HHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHH
Q 007842 182 SAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRV 257 (587)
Q Consensus 182 ~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~v 257 (587)
+++-.++.++...+. +.+...++|-+-+.--|++..|+.+-..++..+...-.. +.+.++|+.-+...+.+..|+|
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 677777777766644 345666777777777788888887777777766543222 3355566666666677788888
Q ss_pred HHHHHHHHHHHHHHhCCCccccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHhhh---C-------HHHHHHhHhHHH
Q 007842 258 RYMVANQLYELCEAVGPEPTRMD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---N-------PELAIQHILPCV 324 (587)
Q Consensus 258 R~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~i~~~l 324 (587)
|.+++-++..+...-+.+...+. +...+.+.++|-...||.++-++...+++.+ . ...+...++|++
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence 88888888888775443333333 3333444456666778887766655554432 1 124456677777
Q ss_pred H-HhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcCCChHH-------------------HHHH----
Q 007842 325 K-ELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDV-------------------RLNI---- 378 (587)
Q Consensus 325 ~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v-------------------r~~a---- 378 (587)
. +...+.-..||+.++..+..++...|.. .+...++|.+......-++.| |..+
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence 5 2333556788888888888887777653 245667777766655444333 2222
Q ss_pred --HHhhhhhhhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHH
Q 007842 379 --ISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIR 453 (587)
Q Consensus 379 --~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr 453 (587)
.+++.....+++... .+.++|.+.+++.. -.-..|.+++..+..++..+|.+. +..+++..++..++|.+..+|
T Consensus 1216 pmmeTi~~ci~~iD~~v-Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1216 PMMETINKCINYIDISV-LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred cHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence 122333333333333 35677777776654 356677788888888888777553 556788888888899999999
Q ss_pred HHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--HHHHhhHHHHHHhhcCCC---Ch
Q 007842 454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDR---VP 528 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~---~~ 528 (587)
.+-..+.+.+++.-.++.+.+-+-..+..++.+.+. .+..++..+.+++.+... +.+...++|.+.-...+. +.
T Consensus 1295 kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q 1373 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQ 1373 (1702)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHH
Confidence 999999999988766654433332333333333222 224444444444432221 114566777665544433 11
Q ss_pred hHHHHHHHHHHHhhhhhch-H-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 529 NIKFNVAKVLQSLIPIVDQ-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 529 ~vR~~~~~~l~~l~~~~~~-~-~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
+.+......+.-. ..+. . ...+.+.+.+.+..++..+.+|..+++++..++.-+.+
T Consensus 1374 ~Lw~dvW~e~vsg--gagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1374 ELWNDVWAELVSG--GAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred HHHHHHHHHhCCC--CcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence 1111111111100 0011 1 22345667777788888899999999999888765443
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.76 E-value=1.3e-13 Score=141.09 Aligned_cols=476 Identities=11% Similarity=0.048 Sum_probs=319.0
Q ss_pred CCCCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCC
Q 007842 1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG 79 (587)
Q Consensus 1 ~~~~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~ 79 (587)
|.+|.+-..=+...++.+.++|...|.-+.-++..++.. .|+.. --.+..+.. +.+.++.+|..+.+.++.+ .
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~-~pela-lLaINtl~KDl~d~Np~IRaLALRtLs~I----r 133 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL-QPEKA-LLAVNTFLQDTTNSSPVVRALAVRTMMCI----R 133 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-ChHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----C
Confidence 445544444467778899999999999888777766542 22322 134565554 6667788888888888776 3
Q ss_pred CcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (587)
Q Consensus 80 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (587)
.++....+.+.+.+.+.|+++.||+.|+.++.++....+.-.....+.+.+.++..|.+..+...|+..+..+....+..
T Consensus 134 ~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 134 VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 35777888888999999999999999999999997754432223457788888888889999988988887776554321
Q ss_pred --HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh
Q 007842 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (587)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
.....+.-+...+.+-+++-+..+++.+...... .+.....++..+...++..++.|...|++++-.+.....++.
T Consensus 214 l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~ 291 (746)
T PTZ00429 214 IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL 291 (746)
T ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH
Confidence 1223333344555666788888877777542111 122234566666666778889999999999888876554321
Q ss_pred ---hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 007842 238 ---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (587)
Q Consensus 238 ---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
....+.+.+..+ ...++.+|..+++.+..+....+ ..... -+..|.-..+|+. .||...++.|..++..-.-
T Consensus 292 ~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv- 366 (746)
T PTZ00429 292 IERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVA- 366 (746)
T ss_pred HHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCcccH-
Confidence 122233444455 34668899999999988877532 11111 1333444456665 5899999988888753222
Q ss_pred HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842 315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 315 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (587)
..++.-+.....+.+..++..++.+++.++..++. ..+..+..+..++.+... +...++..+..+.+.+....
T Consensus 367 ---~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~- 439 (746)
T PTZ00429 367 ---PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL- 439 (746)
T ss_pred ---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH-
Confidence 55667777777888999999999999999876543 356777888888876544 44456777777776654332
Q ss_pred HhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH
Q 007842 395 SQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (587)
Q Consensus 395 ~~~~l~~l~~~~---~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
+++.+...+ .-.++..|.+++..+|..+..+.. .+.++..+..-+.++...||.+.+.+..++.-....+.
T Consensus 440 ---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~ 513 (746)
T PTZ00429 440 ---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM 513 (746)
T ss_pred ---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 334444322 124678899999999998876543 23455445566677889999999999888887655432
Q ss_pred HhhhhHHHHHhhc--cCCchhHHHHHHHHHHHhhc
Q 007842 472 AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAP 504 (587)
Q Consensus 472 ~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l~~ 504 (587)
...+..+++.. .+.|+.+|-.|.....-+..
T Consensus 514 --~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 514 --EPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred --HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC
Confidence 23444555432 35678999999876665543
No 32
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=1.2e-16 Score=161.56 Aligned_cols=300 Identities=20% Similarity=0.219 Sum_probs=230.7
Q ss_pred chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC------CccccchHHHHHHh
Q 007842 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------EPTRMDLVPAYVRL 288 (587)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~ 288 (587)
....|..|++.+..++....++...+.++|++..+..|+...||..|+.++..+...+.+ ..+++.++|.+..+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 445688899999999999998888999999999999999999999999999988776543 34567899999999
Q ss_pred cCC-ChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHH--HhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHH
Q 007842 289 LRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 365 (587)
Q Consensus 289 l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~--~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 365 (587)
+.| ....||.+-+.+|+.++..... |... ...+. .+.++++.+ ....-...-+.......+-..+..
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~r--Fle~-~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v~s 585 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYR--FLEL-TQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMVSS 585 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHH--HHHH-HHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHHHH
Confidence 998 6688999999999998874221 1111 11111 123444433 000000000112234455566788
Q ss_pred hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
++.|+.+.||.+.++.|..++..+|.+..-+.+++.+..+++|++|+.|.+.++.|..++-.+|.....++++|++.+.+
T Consensus 586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 586 LLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGL 665 (1431)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhc
Confidence 99999999999999999999999998877788999999999999999999999999988888898878899999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHhC-hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC
Q 007842 446 QDKVYSIRDAAANNLKRLAEEFG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK 524 (587)
Q Consensus 446 ~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~ 524 (587)
.|..+.|-..|+.++..+++.-- .+....+++.....++-.||..+|.+++..|..+...++.....-.++|.+-..+.
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 99999999999999999987321 11223456666677788999999999999999999988876655556665555444
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.8e-14 Score=132.78 Aligned_cols=443 Identities=14% Similarity=0.102 Sum_probs=308.3
Q ss_pred hhcchhhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc---CCCChHHHHHHHH
Q 007842 94 LCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY---PSAPDILKTELRS 166 (587)
Q Consensus 94 l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~---~~~~~~~~~~l~~ 166 (587)
.++|.--+-|++|+--+.++.+.+-. +++.+.+-.+...++.+.....|..+.-.+.... ..-+..+...+++
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~ 87 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVP 87 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhH
Confidence 34566667788888888888776533 3444444445556666555444443332221111 1111238889999
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh----hhhhh
Q 007842 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVA 240 (587)
Q Consensus 167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~ 240 (587)
.+..+++|.+..||..+|+++.++++....+ .+.+.+...+.++..|.+.+||.+ ++.+..+.+.+.. ....+
T Consensus 88 Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~ 166 (675)
T KOG0212|consen 88 PVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLP 166 (675)
T ss_pred HHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHH
Confidence 9999999999999999999999999998765 366788888889999999998864 5666666554432 33467
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---
Q 007842 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--- 315 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 315 (587)
.++|++..-+.+.++..|...+..+..+-..-+-+ ...+.+++.+.++++|+.++||..+-.+++.+...+..++
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~ 246 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM 246 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 79999999999999999999999887654321111 1234689999999999999999999999988877664331
Q ss_pred HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCCh-HHHHHHHHhhhhhhhhhchh
Q 007842 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 316 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~ 392 (587)
-.+..++.+...+..+++.++..|...+..+....|++. +...++..++.++.+.++ .++..+...-+.+....+.+
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 125677888888899999999999999999998888764 344555666667777655 46655554433333333322
Q ss_pred h-----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007842 393 L-----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (587)
Q Consensus 393 ~-----~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
. -...++..+...+.+.....|.++++.+..+-...+.+.+ .+.+.+.++.-+.|++..|-..++..++.+++
T Consensus 327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 1 1246788888889999999999999999998887765543 46688889999999999999999999999987
Q ss_pred HhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 466 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 466 ~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
.-..... -.++..+.+++.....-.+..+...+..++..+.++.+...+-..+.. .++-..-..-+++|-.+
T Consensus 407 s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~---e~nl~FAstMV~~Ln~i 478 (675)
T KOG0212|consen 407 SSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER---EENLKFASTMVQALNTI 478 (675)
T ss_pred CcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc---cccchHHHHHHHHHHhh
Confidence 4332111 234555666666666666777777888888777776554444333333 23334444444444443
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.8e-13 Score=130.32 Aligned_cols=343 Identities=14% Similarity=0.133 Sum_probs=248.2
Q ss_pred hhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-
Q 007842 239 VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP- 313 (587)
Q Consensus 239 ~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 313 (587)
..-++|.+.+++. +.++.++..|+.+|.+++..... -......+|.|+.++.+++..|+..|+.+|+.++..-..
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 4456777777764 77799999999999999874332 223456899999999999999999999999998864322
Q ss_pred --HHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842 314 --ELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 314 --~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (587)
-.....+++.+..++..++. ...+.+.+++.+++..-.+ -.....++|.+..++.+.+++|...|+++++.+..
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 12234466667777665554 7788889999999876521 13466789999999999999999999999998875
Q ss_pred hhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-----HHHHHHHHHHhcC-CCchHHHHHHHH
Q 007842 388 VIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQ-DKVYSIRDAAAN 458 (587)
Q Consensus 388 ~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~-d~~~~vr~~a~~ 458 (587)
.-... .+...++|.+..++.+.+..++..++.+++.++. |.+.. ....+|.+..++. .+...+|..|+-
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 43221 1234678999999999999999999999988764 33332 2345788888887 667779999999
Q ss_pred HHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHH
Q 007842 459 NLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIK 531 (587)
Q Consensus 459 ~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR 531 (587)
+++++...... ..+...++|.+...+...++.+|..|+++++++.....++. +...+++.+.+++.-++..+-
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 99999862211 12346799999999999999999999999999987665544 245578889999987888888
Q ss_pred HHHHHHHHHhhhhhch------HHHHh-----hHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 532 FNVAKVLQSLIPIVDQ------SMVEK-----TIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 532 ~~~~~~l~~l~~~~~~------~~~~~-----~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
..++.++..+...... ..+.. .-+..+..|......+ ...+|++.+.++.+.
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~---Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEE---IYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHH---HHHHHHHHHHHhcCC
Confidence 8888888887654211 11111 1234444455555544 455566666666653
No 35
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.7e-11 Score=128.00 Aligned_cols=529 Identities=16% Similarity=0.141 Sum_probs=324.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhh----hhhhhhhhhhccCCcHH-HHHHHHHHhccccccCCCcchHh
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT----RKELIPFLSENNDDDDE-VLLAMAEELGVFIPYVGGVEHAH 85 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~----~~~l~p~l~~~~~~~~~-v~~~~~~~l~~l~~~~~~~~~~~ 85 (587)
.+.|...+.|+++..|.++.--+-.+.+.+|.... .+++...+...+.+++| .+..+++-||-.-.. |+.....
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel-gd~~~k~ 898 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL-GDSSLKK 898 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEec-CCchhHH
Confidence 35666678899999999987666666677763222 23555555565555555 566667777654432 4444344
Q ss_pred hhHHH-Hhhhhcch--------hhHH-------------HHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcch
Q 007842 86 VLLPP-LETLCTVE--------ETCV-------------RDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTAR 142 (587)
Q Consensus 86 ~l~~~-l~~l~~~~--------~~~v-------------r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r 142 (587)
.+..- +..+.... +..+ .-...+-|..++..++.. .++..+.+++++. .|+.|
T Consensus 899 ~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP----dLVYKFM~LAnh~A~wnSk 974 (1702)
T KOG0915|consen 899 SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP----DLVYKFMQLANHNATWNSK 974 (1702)
T ss_pred HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh----HHHHHHHHHhhhhchhhcc
Confidence 44433 22333211 0000 111223334444444432 3444455666654 67777
Q ss_pred hhHHhhhHhhcCCCCh---HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchh
Q 007842 143 VSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDS 217 (587)
Q Consensus 143 ~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~ 217 (587)
..|+--++.++....+ ++.+.++|-|...--||++.|+.+.....+.+...-.. +.+...|+.-+..-+.+..|.
T Consensus 975 ~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewR 1054 (1702)
T KOG0915|consen 975 KGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWR 1054 (1702)
T ss_pred cchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHH
Confidence 7777677777766543 37889999999999999999999988887777654211 344455555556667889999
Q ss_pred HHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHH---HHHHHhCCCc-------cccchHHH
Q 007842 218 VRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLY---ELCEAVGPEP-------TRMDLVPA 284 (587)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~---~~~~~~~~~~-------~~~~l~~~ 284 (587)
||.+++-++..+.+.-+.+ ...++++..+.+..+|-...||.++-.+.. +++-..+... ....++|.
T Consensus 1055 VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPf 1134 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPF 1134 (1702)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence 9999999999988765543 234567777778888888889988765544 4443333211 12235555
Q ss_pred HHH-hcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHcc------------ccc
Q 007842 285 YVR-LLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGM------------APL 349 (587)
Q Consensus 285 l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l------------~~~ 349 (587)
+.. ..-+.-.+||..++..+..+.+.-|.. .+.++++|.+.+....-++.|-...+--+.++ +..
T Consensus 1135 Ll~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aks 1214 (1702)
T KOG0915|consen 1135 LLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKS 1214 (1702)
T ss_pred HhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcC
Confidence 543 223556899999999999999988875 56688888888877665554433222111111 000
Q ss_pred cc------------hhHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHH
Q 007842 350 LG------------KDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVR 414 (587)
Q Consensus 350 ~~------------~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR 414 (587)
.+ ....++.++|.+.++++.. .-..|.+++..+..+...+|.+ .+...++..+...++|.+..+|
T Consensus 1215 spmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1215 SPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred CcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence 00 1234677888888888765 3467788888888888777765 3456777888888899999999
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhH
Q 007842 415 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLY 491 (587)
Q Consensus 415 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~ 491 (587)
.+...+++.+++.-.++.+.+.+-..+-.++.+.+. .+..++..+..+.+ +..+ ...+.++|.++=...+.....
T Consensus 1295 kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian-~s~e~Lkn~asaILPLiFLa~~ee~Ka~ 1372 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIAN-YSQEMLKNYASAILPLIFLAMHEEEKAN 1372 (1702)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHH-hhHHHHHhhHHHHHHHHHHHHhHHHHHH
Confidence 999999999999877766655444444444444333 22333333333322 2222 145778887754333321111
Q ss_pred HHHHHHHHHHhhc-ccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 492 RMTILRAISLLAP-VMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 492 R~~a~~~l~~l~~-~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
..--=+....+.. ..|.- ...+.+.+.+.+..++..+.+|..+++++..+++...
T Consensus 1373 q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1373 QELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred HHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence 1111122223322 11111 1234455666677788789999999999998887643
No 36
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.6e-12 Score=122.09 Aligned_cols=488 Identities=16% Similarity=0.127 Sum_probs=299.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (587)
-..|...|.|.......+|++.+-.+. +-|.+ ...+.|-++. ....+.+|++-+---|-+.++. .++..-.=+.
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~i-A~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSIn 111 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALI-AKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSIN 111 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHH-hcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHH
Confidence 355666677766556666766665331 12322 3355555544 3455667766655555444431 1121112245
Q ss_pred HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007842 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~ 169 (587)
.++.-+.|+|+.+|-.|+++|..+-- ..+. .-++-.+.
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRv--------p~Ia----------------------------------PI~llAIk 149 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRV--------PMIA----------------------------------PIMLLAIK 149 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcch--------hhHH----------------------------------HHHHHHHH
Confidence 56677777777777777777665421 1122 22333445
Q ss_pred HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHH---HH
Q 007842 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP---VI 246 (587)
Q Consensus 170 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~---~l 246 (587)
++..|+++.||+.++.++.++...- +.....+...+..++.|..+-|--.|+-++..++. + ..+.+-+ .+
T Consensus 150 ~~~~D~s~yVRk~AA~AIpKLYsLd--~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---e--rldLIHknyrkl 222 (968)
T KOG1060|consen 150 KAVTDPSPYVRKTAAHAIPKLYSLD--PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---E--RLDLIHKNYRKL 222 (968)
T ss_pred HHhcCCcHHHHHHHHHhhHHHhcCC--hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---h--HHHHhhHHHHHH
Confidence 5667777777777777777776652 23334677777777777777776666666655432 1 1222222 23
Q ss_pred HHhccCCcHHHHHHHHHHHHHHHHHh-CC------------------------------CccccchHHHHHHhcCCChHH
Q 007842 247 VNFSQDKSWRVRYMVANQLYELCEAV-GP------------------------------EPTRMDLVPAYVRLLRDNEAE 295 (587)
Q Consensus 247 ~~~~~d~~~~vR~~a~~~l~~~~~~~-~~------------------------------~~~~~~l~~~l~~~l~d~~~~ 295 (587)
.+++.|-+..-+...+..|.+.+..- .. +....-++.....++.+.++.
T Consensus 223 C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 223 CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcH
Confidence 34444554445555666666666531 10 001112555556677888888
Q ss_pred HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCC-hH
Q 007842 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEF-PD 373 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~-~~ 373 (587)
|-.+++.++..++... . ...+...+.+++. .+..+|......+..++... ...+.|.+.++.- ..+ ..
T Consensus 303 VVmA~aql~y~lAP~~---~-~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~-----~~lF~P~lKsFfv~ssDp~~ 372 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKN---Q-VTKIAKALVRLLR-SNREVQYVVLQNIATISIKR-----PTLFEPHLKSFFVRSSDPTQ 372 (968)
T ss_pred HHHHHHhHHHhhCCHH---H-HHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcc-----hhhhhhhhhceEeecCCHHH
Confidence 8888888888776532 1 2445666666654 35567777777776665332 1234555555432 222 34
Q ss_pred HHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHH
Q 007842 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 453 (587)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 453 (587)
++.--++.|..++..- ....+++.+..++++.+.++-.+++++++.++...+. ..+.++..++.++.+.+..|-
T Consensus 373 vk~lKleiLs~La~es----ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv 446 (968)
T KOG1060|consen 373 VKILKLEILSNLANES----NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVV 446 (968)
T ss_pred HHHHHHHHHHHHhhhc----cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhH
Confidence 4444455555555432 2357788888889988888999999999999987764 356788889999999999999
Q ss_pred HHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCC-chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHH
Q 007842 454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF 532 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~ 532 (587)
..++..+..+.+.-..+. ..++.++.+++..- -+.-|.+.++.+|..+..... +.+.++-.+.+-+.+..+.||.
T Consensus 447 ~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr--i~PDVLR~laksFs~E~~evKl 522 (968)
T KOG1060|consen 447 AEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSDEGDEVKL 522 (968)
T ss_pred HHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch--hchHHHHHHHHhhccccchhhH
Confidence 999999999998655432 34566666655332 356788888888888765432 4566677777788999999999
Q ss_pred HHHHHHHHhhhhhchHHHHhhHHHHHHHh-cCCCCccHHHHHH
Q 007842 533 NVAKVLQSLIPIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFAT 574 (587)
Q Consensus 533 ~~~~~l~~l~~~~~~~~~~~~i~~~l~~l-~~d~d~~Vr~~a~ 574 (587)
.++..-..+...-..+ .+.+...+-++ --|...++|..+.
T Consensus 523 QILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 523 QILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred HHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHHH
Confidence 9999888876442222 23333333443 4588888888775
No 37
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.8e-10 Score=115.52 Aligned_cols=424 Identities=19% Similarity=0.156 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh--cChh
Q 007842 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL--LEPQ 236 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~--~~~~ 236 (587)
++.+.++..+...++|.+..||.++++.+|.+...++.+-..+.+-..+..+.--+++..-..++-+++.++.. +.+.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 46678888889999999999999999999999999874333333333333222223456666888888888754 2222
Q ss_pred hhhhchHHHHHHhccC--------CcHHHHHHHHHHHHHHHHHhCCCcccc---chHH-HHHHhcCCChHHHHHHHHHhH
Q 007842 237 DCVAHILPVIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTRM---DLVP-AYVRLLRDNEAEVRIAAAGKV 304 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d--------~~~~vR~~a~~~l~~~~~~~~~~~~~~---~l~~-~l~~~l~d~~~~vr~~a~~~l 304 (587)
....++|++.+.+.= ....||.+|+-.+-.++....+....+ .+.+ .+...+=|++-++|.+|..++
T Consensus 417 -~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 -LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred -HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 456788888776642 245699999999999988766543322 1222 234455799999999999998
Q ss_pred HHHHhhhCHH------------------------------HHHHhHhHHHHHhc----cCCcHHHHHHHHHHHHcccccc
Q 007842 305 TKFCRILNPE------------------------------LAIQHILPCVKELS----SDSSQHVRSALASVIMGMAPLL 350 (587)
Q Consensus 305 ~~l~~~~~~~------------------------------~~~~~i~~~l~~~~----~d~~~~vr~~a~~~l~~l~~~~ 350 (587)
.+.....++- .+....-|.+..++ .+-+..+|..++.++.++...-
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~ 575 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE 575 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 7765543210 01111223333333 3345688999999999977554
Q ss_pred chhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--------h-hHHhh---HHHHHHHHhcCC--ChHHHHH
Q 007842 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D-LLSQS---LLPAIVELAEDR--HWRVRLA 416 (587)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~-~~~~~---~l~~l~~~~~~~--~~~vR~~ 416 (587)
++ ...+..+|.++...-..+...|.+...+.+.+....-. . ..... ++|.+....-.. ..-+|.+
T Consensus 576 pk-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~ 654 (1133)
T KOG1943|consen 576 PK-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA 654 (1133)
T ss_pred HH-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence 43 33445566666666666788888877777766543211 0 01111 233332221111 1345666
Q ss_pred HHHHHHHHHHhh---ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhccCC-chh
Q 007842 417 IIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNP-HYL 490 (587)
Q Consensus 417 ~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~-~~~ 490 (587)
..+.+..+.-.- ..+.+.+....++.+.+.+++ .+|.+|..+++.++..+- .+.....++...+..+.++ +..
T Consensus 655 ~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~ 733 (1133)
T KOG1943|consen 655 TLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEER 733 (1133)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHH
Confidence 666666554321 123444545555666666666 899999999999998652 2222233555555545554 788
Q ss_pred HHHHHHHHHHHhhcccChHHHHhhHHHHHHhhc-CCCChhHHHHHHHHHHHhhhhhch-------HHHHhhHHHHHHHhc
Q 007842 491 YRMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQ-------SMVEKTIRPCLVELT 562 (587)
Q Consensus 491 ~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~ 562 (587)
+|.....+++.+....-.-...+.+...++... .|..+.-|...+.++..++...+. +.+.+.++.++..+.
T Consensus 734 ~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYt 813 (1133)
T KOG1943|consen 734 IRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYT 813 (1133)
T ss_pred HHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 999988888887632222122334444444433 334888999999999998877662 356677888888888
Q ss_pred CCCCcc----HHHHHHHHHHHHHHhhc
Q 007842 563 EDPDVD----VRFFATQAIQSIDHVMM 585 (587)
Q Consensus 563 ~d~d~~----Vr~~a~~al~~l~~~~~ 585 (587)
.|...| ||..|.+|+..+--.+.
T Consensus 814 td~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 814 TDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred cccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 888776 58888888887766554
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.3e-13 Score=126.76 Aligned_cols=330 Identities=17% Similarity=0.155 Sum_probs=241.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHH
Q 007842 252 DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPC 323 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~ 323 (587)
..+...+..+...+-.+...-.. ......++|.++.++. +.++.+|..|+.+|..++...... ......+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 33444455555555554432221 1112368899999886 667999999999999998754332 223457899
Q ss_pred HHHhccCCcHHHHHHHHHHHHccccccch--hH-HHHhHHHHHHHhhcCCCh-HHHHHHHHhhhhhhhhhchh---hHHh
Q 007842 324 VKELSSDSSQHVRSALASVIMGMAPLLGK--DA-TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID---LLSQ 396 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~---~~~~ 396 (587)
+..++.+++..|++.++++|++++...+. +. ....+++.+..++..... .....+.++|..++..-.+. ....
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 99999999999999999999999854321 11 223456667777776654 67788999999998765321 3346
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--
Q 007842 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-- 471 (587)
Q Consensus 397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-- 471 (587)
.++|.+..++.+.+..+...++.++.++...... -.....+.|.+..+|...+..|+..|+.++|+++. |.+.
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QT 314 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQT 314 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHH
Confidence 7899999999999999999999999988754221 11223467889999999999999999999999764 3332
Q ss_pred ---HhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 472 ---AMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 472 ---~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
.....+|.+..++. ++...+|..|+++++++...-.. ..+...++|.++.+++..+..+|..|+++++++...
T Consensus 315 q~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 315 QVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 33567889988877 66677999999999999862221 124567999999999999999999999999999876
Q ss_pred hchHH----HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 545 VDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 545 ~~~~~----~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
-.++. +...+++.+-.++.-+|.++-..+..+++.+-++
T Consensus 395 g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 395 GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 54442 2344667777777888888877777777777654
No 39
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.8e-11 Score=118.22 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 516 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il 516 (587)
+++-+...+.+.+.++-.++++++|..+...+. ..+..+..++.++.+.+..|-..++..|..+.+.-+.+. .+++
T Consensus 393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii 468 (968)
T KOG1060|consen 393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEIL 468 (968)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHH
Confidence 444455555666666666667777766665543 345566666666666666666667667766665433321 2355
Q ss_pred HHHHhhcCC-CChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 007842 517 PVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ 575 (587)
Q Consensus 517 ~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~ 575 (587)
..+.+++.. ..+..|...++.++..+...+ .+...++..+.+-..|+...||.....
T Consensus 469 ~~La~lldti~vp~ARA~IiWLige~~e~vp--ri~PDVLR~laksFs~E~~evKlQILn 526 (968)
T KOG1060|consen 469 FQLARLLDTILVPAARAGIIWLIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILN 526 (968)
T ss_pred HHHHHHhhhhhhhhhhceeeeeehhhhhhcc--hhchHHHHHHHHhhccccchhhHHHHH
Confidence 555555532 356666666666666665532 233455555555556777777665544
No 40
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.5e-12 Score=115.75 Aligned_cols=383 Identities=14% Similarity=0.128 Sum_probs=264.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhh---HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh
Q 007842 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (587)
.+....+..++++.++.++.+++.++|+++-..+.....- -+-+++.++..|... ||..++.++-.++..-.....
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~ve-vqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVE-VQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcE-EEeeehhhhhhhhccccchhh
Confidence 3444455567788999999999999999887766543322 244577777777654 677778888777765222111
Q ss_pred --hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 007842 239 --VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (587)
Q Consensus 239 --~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
..--+..+.++.+.++.+||+.+..++..+...... ......-+|.++.+++..+..+|..|..+++.++-.-...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 111233444578888899999999999887765432 3334457899999999999999999999999887532221
Q ss_pred ----HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh
Q 007842 315 ----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 315 ----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (587)
...++++|.+..++.|++++++..+..+++.++..-. .+....--+|.+.++++++.-..-.+.+-++..+.-+
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 1235689999999999999999999999999985321 1222334579999999888765555555666555433
Q ss_pred hchhhH--HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 007842 389 IGIDLL--SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (587)
Q Consensus 389 ~~~~~~--~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
-+.+.. ...++..+..++. ..+..++..+...+-.++.... ...+...-+|.+..++-|..-+||.....+++.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 332211 1223334444443 3455677777777777765321 223334467888888999999999998888888
Q ss_pred HHHH--hChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH------H--HHhhHHHHHHhhcCCCChhHHH
Q 007842 463 LAEE--FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE------I--TCSRLLPVVINASKDRVPNIKF 532 (587)
Q Consensus 463 l~~~--~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~------~--~~~~il~~l~~~l~d~~~~vR~ 532 (587)
+.-. ....+....++|.+..+..+.+..+|-.+..++.++......- | -...+-..+.+.+.+....+|.
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~h 482 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRH 482 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHH
Confidence 7642 1222334568899999999999999999999999998643320 0 0134556677777777888888
Q ss_pred HHHHHHHHhhhhh
Q 007842 533 NVAKVLQSLIPIV 545 (587)
Q Consensus 533 ~~~~~l~~l~~~~ 545 (587)
.+.+++.++.+..
T Consensus 483 ia~wTI~qLle~h 495 (550)
T KOG4224|consen 483 IARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887653
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.52 E-value=1.1e-10 Score=117.11 Aligned_cols=370 Identities=17% Similarity=0.187 Sum_probs=249.7
Q ss_pred hhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHH
Q 007842 211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVR 287 (587)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~ 287 (587)
+++.+.+.-..++.+|..+.....+....+.+.+.+...+.++++.||..+++.++.+...-+. -.....+++.+..
T Consensus 47 L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~ 126 (503)
T PF10508_consen 47 LNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQ 126 (503)
T ss_pred HhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHH
Confidence 3344444456777888888887777666788899999999999999999999998887653211 1234579999999
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH---HHHhHHHH
Q 007842 288 LLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPI 362 (587)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~ 362 (587)
++.|++..|...|+++|..++..-..- .+.+...+.+..++..++..+|.-+.+.+..++..-.... ...-+++.
T Consensus 127 ~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ 206 (503)
T PF10508_consen 127 CLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDL 206 (503)
T ss_pred HHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHH
Confidence 999999999999999999998743221 1122337778888877788889889998888875543211 12237888
Q ss_pred HHHhhcCCChHHHHHHHHhhhhhhhhhc-hhhH-HhhHHHHHHHHhcCC--ChHHH----HHHHHHHHHHHHhhChhhh-
Q 007842 363 FLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLL-SQSLLPAIVELAEDR--HWRVR----LAIIEYIPLLASQLGVGFF- 433 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~-~~~~l~~l~~~~~~~--~~~vR----~~~~~~l~~l~~~~~~~~~- 433 (587)
+...+++++.-++.++++.+..++..-. .+.+ ...+++.+.+.+.+. +++.+ -..+++++.++.. .+..+
T Consensus 207 ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~ 285 (503)
T PF10508_consen 207 LLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVL 285 (503)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHH
Confidence 8899999889999999999999987322 1211 235677777766442 33122 1233555555553 22222
Q ss_pred --HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh-ChHHH-------hhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 434 --DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEWA-------MQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 434 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-------~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
.+.++..+...+.+.+...+..|+.++|.++... |.... ...++..+..........+|..++.+++.+.
T Consensus 286 ~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 286 ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 2556667778889999999999999999998643 22222 1234444455556667789999999999995
Q ss_pred cccCh-----------HHH---HhhHHH-HHHhhcCCCChhHHHHHHHHHHHhhhhhchH-HH--HhhHHHHHHHhcCCC
Q 007842 504 PVMGS-----------EIT---CSRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MV--EKTIRPCLVELTEDP 565 (587)
Q Consensus 504 ~~~~~-----------~~~---~~~il~-~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d~ 565 (587)
..... .|+ ...-.. .+...++.|-+++|.++...+..++.+-... .+ .+.++..+..-..++
T Consensus 366 ~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~ 445 (503)
T PF10508_consen 366 TSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTET 445 (503)
T ss_pred hcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCC
Confidence 43221 111 111122 7778889999999999999999998764322 11 133444444444566
Q ss_pred CccHHHHHHHHHHHHH
Q 007842 566 DVDVRFFATQAIQSID 581 (587)
Q Consensus 566 d~~Vr~~a~~al~~l~ 581 (587)
+.+.+..=...+..+.
T Consensus 446 ~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 446 TKEGKEAKYDIIKALA 461 (503)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6666655555555554
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.49 E-value=6.7e-10 Score=111.45 Aligned_cols=389 Identities=14% Similarity=0.140 Sum_probs=239.8
Q ss_pred HHHHhcCCCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHH
Q 007842 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMS 205 (587)
Q Consensus 130 l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~ 205 (587)
+....++.+...-..++.++..+.....+. ....+.+.+..++.++++.||..++..++.++..-.. -.....+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 444444433333345667777777766654 5788889999999999999999999999888765321 113356888
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---Cccccc
Q 007842 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMD 280 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ 280 (587)
.+...+.|++..|...|+.++..++..-..- .+.+.+.+.+.+++..++..+|.-+++.+..++..-.. ......
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 9999999999999999999999998753321 12233477788888777788888888888888753221 111235
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH--HHhHhHHHHHhccCCc--H---HHH-HHHHHHHHccccccch
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSS--Q---HVR-SALASVIMGMAPLLGK 352 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~--~---~vr-~~a~~~l~~l~~~~~~ 352 (587)
+++.+...++++|.-+|..+++.+..++..-....+ ...+++.+...+.+.. + .+. -.....++.++...+.
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~ 282 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ 282 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence 889999999998999999999999999984322222 1235555655554322 2 111 2223445555544222
Q ss_pred hH--HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHH--------hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007842 353 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--------QSLLPAIVELAEDRHWRVRLAIIEYIP 422 (587)
Q Consensus 353 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~l~~l~~~~~~~~~~vR~~~~~~l~ 422 (587)
.. ..+.++..+..++.+.++..+..|+.+++.++......... +.++..+..........+|..++.+++
T Consensus 283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 11 23456666677788889999999999999988654322211 122333333334444556666666666
Q ss_pred HHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHh
Q 007842 423 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 502 (587)
Q Consensus 423 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l 502 (587)
.+...... .-.+.+. .....+...++... ....+..+++.|-+.+|.++...+..+
T Consensus 363 ~il~~~~~-~~~~~i~-------------------~~~~~w~~~~~~~~----~~~~l~~~~~qPF~elr~a~~~~l~~l 418 (503)
T PF10508_consen 363 SILTSGTD-RQDNDIL-------------------SITESWYESLSGSP----LSNLLMSLLKQPFPELRCAAYRLLQAL 418 (503)
T ss_pred HHHhcCCC-CchHHHH-------------------HHHHHHHHHhcCCc----hHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 55432211 0011111 22223333333221 111666778888899999999999998
Q ss_pred hcccCh-HH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 503 APVMGS-EI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 503 ~~~~~~-~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
+.+-.. .. ..+.++..+++.-.+++...+..=...+..+.
T Consensus 419 ~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 419 AAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred hcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 864311 11 13456666766666666655544444444444
No 43
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.2e-10 Score=114.50 Aligned_cols=437 Identities=13% Similarity=0.126 Sum_probs=278.0
Q ss_pred HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhh
Q 007842 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT 201 (587)
Q Consensus 122 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 201 (587)
....+.+++......+-...| -+.+.-..+....|+.....++.+..-+.|++|.+|..|...++.+- -+....
T Consensus 47 vSslF~dvvk~~~T~dlelKK--lvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~e 120 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKK--LVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITE 120 (734)
T ss_pred hHhhhHHHHhhcccCCchHHH--HHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHH
Confidence 334444444444444422222 22333233444445556677888888899999999999988877542 355677
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccch
Q 007842 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (587)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l 281 (587)
++...+....+|+++.||..++-+...+...-+......-+.+.+..+..|+++.|-..|..++..+.+.-.........
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 78888888999999999999988888776654444445568888999999999999999999999888764322211112
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH-HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch--hHHHHh
Q 007842 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQ 358 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ 358 (587)
.+.+..++..-+...-.+-+..+..+....+++. -...+...+...+.+.+..|--.+.+.+-.....+.. +.+...
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K 280 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKK 280 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223322223333344445555555444321 1134455555555666666655555555554443332 223344
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--------------------------------hhhHHhhHHHHHHHHh
Q 007842 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------------------------------IDLLSQSLLPAIVELA 406 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------------------------~~~~~~~~l~~l~~~~ 406 (587)
+.|.+..++.... ++...++..+.-+..... .+...++++.-+.+..
T Consensus 281 ~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYa 359 (734)
T KOG1061|consen 281 VAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYA 359 (734)
T ss_pred hcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhh
Confidence 4455555444443 555555555544432211 0122345667777777
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC
Q 007842 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486 (587)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 486 (587)
.+.+...-..++++++.++-..... ..+++.++.+++-...-|-+.++..+..+.+.+...+ +.+++.+...+..
T Consensus 360 tevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~s 434 (734)
T KOG1061|consen 360 TEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDS 434 (734)
T ss_pred hhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccc
Confidence 7778777777889998887655433 5688889999888888888888889999988876643 4555555443332
Q ss_pred -CchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCC
Q 007842 487 -PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDP 565 (587)
Q Consensus 487 -~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~ 565 (587)
.++..|.+.++.+|.-+..+... ..++..+++...|.+..|+...+.+.-.+..+.+. ..++.+-..|.....|.
T Consensus 435 l~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~ 510 (734)
T KOG1061|consen 435 LQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLATADT 510 (734)
T ss_pred cCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccc
Confidence 36779999999999999888764 67888999999999999999999998887766554 23334444444455555
Q ss_pred -CccHHHHHH
Q 007842 566 -DVDVRFFAT 574 (587)
Q Consensus 566 -d~~Vr~~a~ 574 (587)
++++|..+.
T Consensus 511 ~~~dlrDr~l 520 (734)
T KOG1061|consen 511 DNPDLRDRGL 520 (734)
T ss_pred cChhhhhhHH
Confidence 458888765
No 44
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=5.9e-12 Score=112.05 Aligned_cols=375 Identities=17% Similarity=0.150 Sum_probs=248.3
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh---hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC--ccccc
Q 007842 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMD 280 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ 280 (587)
.+..+++..++.+..++...++.++-....... ..-+-+++.+...| +-.||..++.++..++..-... .....
T Consensus 89 pvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sG 167 (550)
T KOG4224|consen 89 PVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSG 167 (550)
T ss_pred HHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhcc
Confidence 344456777788888899999988876654322 12234566666665 4578888999999888752211 11123
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH--HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh----H
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----A 354 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~ 354 (587)
-+..+.++-+.++..+|..+..+|..+........ +...-+|.+..+++..+..+|..++.+++.++-.-... .
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 35556668888999999999999988876543321 22345799999999999999999999999987432111 1
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 007842 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~ 432 (587)
..+.++|.+..++.|.++.++..|..+|..+...-. .+.....-+|.+.++++++.-..-.+-.-++..++-+-+.+.
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 234689999999999999999999999998875422 222234458999999988775554444444544443322221
Q ss_pred h--HHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhC---hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHh--hc
Q 007842 433 F--DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLL--AP 504 (587)
Q Consensus 433 ~--~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l--~~ 504 (587)
. ...++..+..++.- .+.+++..|..+|..++.... ..++....+|.+.+++-|..-.+|...-.++..+ ..
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 1 11233334555543 455699999999999976332 2334566899999999888666665555555554 44
Q ss_pred ccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--------HHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007842 505 VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------MVEKTIRPCLVELTEDPDVDVRFFATQA 576 (587)
Q Consensus 505 ~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------~~~~~i~~~l~~l~~d~d~~Vr~~a~~a 576 (587)
..........++|.++.++.+.+.+||-+++.+|.+++.....= ...+.+...|..++...+..+|..+...
T Consensus 408 ~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wT 487 (550)
T KOG4224|consen 408 NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWT 487 (550)
T ss_pred ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444445678999999999999999999999999998753210 0113344445555555555666666555
Q ss_pred HHHHH
Q 007842 577 IQSID 581 (587)
Q Consensus 577 l~~l~ 581 (587)
+.++.
T Consensus 488 I~qLl 492 (550)
T KOG4224|consen 488 IQQLL 492 (550)
T ss_pred HHHHH
Confidence 55443
No 45
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.7e-09 Score=102.36 Aligned_cols=468 Identities=11% Similarity=0.045 Sum_probs=279.6
Q ss_pred HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC----CCCcchhhHHhhhHhhcCCCChH
Q 007842 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG----EWFTARVSACGLFHIAYPSAPDI 159 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~----~~~~~r~~a~~~l~~~~~~~~~~ 159 (587)
+..++--+.++.++.|+..|+....++.++...- +.++-....+++| -...+|-.|+..+....+ .+
T Consensus 63 at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t------edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid---~~ 133 (898)
T COG5240 63 ATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT------EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVID---GE 133 (898)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc------hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcC---cc
Confidence 3445555678889999999999988888876432 2222223333333 233556566654433333 33
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhh------------CCchhHHHHHHHH
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQ------------DDQDSVRLLAVEG 225 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~------------d~~~~vr~~a~~~ 225 (587)
....+-.++.+..-++++.+|.++.-.-..+...... ..+.+........+.+ ..++.....|+..
T Consensus 134 tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGl 213 (898)
T COG5240 134 TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGL 213 (898)
T ss_pred hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHH
Confidence 4444555666777788888887765544433322100 0011111111111110 1112223333333
Q ss_pred HHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007842 226 CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (587)
Q Consensus 226 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (587)
|-.+-+.- ......++..+..-..-.+.......++....+... +......+.|.+...++|.-..|...+++++.
T Consensus 214 Lyq~kr~d--kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~--n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~ 289 (898)
T COG5240 214 LYQSKRTD--KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE--NSQALLQLRPFLNSWLSDKFEMVFLEAARAVC 289 (898)
T ss_pred HHHHhccc--HHHHHHHHHHhhcccccccchhheehHHHHHHHHHh--ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 33222110 001111111111111001111111111222222211 11223467888888899988999999999999
Q ss_pred HHHhhh-CHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842 306 KFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 306 ~l~~~~-~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
.++..- +++ +....+..+..+++.+....|.+|...+.+++...+.... ..-+-+..++.|.+..+-..|+..|-+
T Consensus 290 ~~~~~nv~~~-~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 290 ALSEENVGSQ-FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred HHHHhccCHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccccchHHHHHHHHH
Confidence 987654 544 4477788889999999999999999999999876553211 122446778888888777666666544
Q ss_pred hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc-CCCchHHHHHHHHHHHHH
Q 007842 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRL 463 (587)
Q Consensus 385 l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l 463 (587)
- |.+...+.++..+..++.|-+...+..++.++..++..++... ..++..+...+ +..-.+-+.+++.++..+
T Consensus 367 T----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 367 T----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDA 440 (898)
T ss_pred c----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3 3344446777777778877777777778888888887765432 23444444433 456678899999999988
Q ss_pred HHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----HHHHhhHHHHHHhhcCCCChhHHHHHHHHHH
Q 007842 464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 464 ~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~ 539 (587)
++.... ..+..+..+.+.+.|..+ -+.+++.++-++...+. ..+..+++.-++ =.+..||.+|+.+|.
T Consensus 441 ~~~~p~--skEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLs 512 (898)
T COG5240 441 MENDPD--SKERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALS 512 (898)
T ss_pred HhhCch--HHHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHH
Confidence 876543 246677777787877653 45667777777654332 223333433332 357889999999999
Q ss_pred HhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 540 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 540 ~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.++-........+.+...|.++++|.|.+||..|.-++..+.
T Consensus 513 kf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 513 KFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 988766655566788899999999999999999999988765
No 46
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-08 Score=104.25 Aligned_cols=490 Identities=15% Similarity=0.078 Sum_probs=254.3
Q ss_pred hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCC--CChHHHHH
Q 007842 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--APDILKTE 163 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~--~~~~~~~~ 163 (587)
.++..|...++|.|..||-.|++.++.+...++.+-..+.+-..+.-+..-+....-..+|-+++.++.. +.+.....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~d 420 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLED 420 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4445555556677778888888888888777775432222222222111111222223455555554432 23445566
Q ss_pred HHHHHHHhcCC--------CChHHHHHHHHhHHHHHHhhccchhhhHHHH----HHHHhhhCCchhHHHHHHHHHHHHhh
Q 007842 164 LRSIYTQLCQD--------DMPMVRRSAASNLGKFAATVEPAHLKTDIMS----IFEDLTQDDQDSVRLLAVEGCAALGK 231 (587)
Q Consensus 164 l~~~l~~l~~d--------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~----~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (587)
++|++...+.= ....||.+++..+-.++....+....+.+-. ++...+-|.+-++|++|..++.....
T Consensus 421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVG 500 (1133)
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence 77766655432 2356777777777777776655444432222 22333456666777777666654433
Q ss_pred hcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh-cCCChHHHHHHHHHhHHHHHhh
Q 007842 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL-LRDNEAEVRIAAAGKVTKFCRI 310 (587)
Q Consensus 232 ~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
..+. .++-++++. ..+.-+-.-|..+...+......++ .....++..+... +..=+..+|+.++.+|..+...
T Consensus 501 R~~n---~p~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~--~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 501 RQGN---FPHGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFS--GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred cCCC---CCCchhhhh-hcchhhhhhhhhHHHHHhHHHHhhh--hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 3221 112222211 1111122233333333333322211 1111222222221 3344678899999999987664
Q ss_pred hCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch-h---------HH--HHhHHHHH-HHhhcCC-ChHHHH
Q 007842 311 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D---------AT--IEQLLPIF-LSLLKDE-FPDVRL 376 (587)
Q Consensus 311 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~---------~~--~~~l~~~l-~~~l~d~-~~~vr~ 376 (587)
. ++......+|.+......++...|.....+.+.+...+.. + .. ...++|.+ ...+.-. ..-.|.
T Consensus 575 ~-pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~ 653 (1133)
T KOG1943|consen 575 E-PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQ 653 (1133)
T ss_pred h-HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHH
Confidence 3 3334445667777666667777777776666655432211 0 00 11122222 2222211 134455
Q ss_pred HHHHhhhhhhhhhc---hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh--ChhhhHHHHHHHHHHhcCCC-ch
Q 007842 377 NIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDK-VY 450 (587)
Q Consensus 377 ~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~-~~ 450 (587)
...+.+..+...-. .+...+.....+.+...+++ .+|.++...++.++... +.+.....++.-.+..+.+. +.
T Consensus 654 ~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~ 732 (1133)
T KOG1943|consen 654 ATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEE 732 (1133)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHH
Confidence 55555544432111 11122223333444445666 89999999999887653 22222223444444444444 77
Q ss_pred HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCC
Q 007842 451 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDR 526 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~ 526 (587)
.+|.....+++.+....-.-...+.+...++...- |-...-|...+.++.++.+.++. ....+++...+++.++|-
T Consensus 733 ~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddY 812 (1133)
T KOG1943|consen 733 RIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDY 812 (1133)
T ss_pred HHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc
Confidence 88888877777765422111123444444444332 32567899999999999887772 222345555555555432
Q ss_pred --------ChhHHHHHHHHHHHhhhhhc-hHHH----HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 527 --------VPNIKFNVAKVLQSLIPIVD-QSMV----EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 527 --------~~~vR~~~~~~l~~l~~~~~-~~~~----~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
-.+||.++++++..+..... ++.+ ...++-.+.+-..|+-...|..|+.++.++..+
T Consensus 813 ttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 813 TTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred ccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 56899999999998876554 2222 222333333344555556688888888776543
No 47
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.35 E-value=4.6e-10 Score=108.16 Aligned_cols=278 Identities=23% Similarity=0.259 Sum_probs=196.1
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 320 (587)
...+.+.+.+.++++.+|..++..++.+.. ...+|.+...+.|.++.||..++.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 456667777778888888888888776553 4678888888888888899888887766542 233
Q ss_pred hHHHHHhcc-CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC------------hHHHHHHHHhhhhhhh
Q 007842 321 LPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ 387 (587)
Q Consensus 321 ~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~ 387 (587)
++.+..++. |+++.||..++.+++.+.... .++.+...+++.. ..+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 455555555 788899999998888886421 1334445555543 2577778777777654
Q ss_pred hhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (587)
Q Consensus 388 ~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
+...+.+...+.+....+|..++..++.+.... ..+.+.+...+.|+++.||..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 455677778888888899999988888775432 3456778888899999999999888877643
Q ss_pred ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 468 GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 468 ~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
....+.+...+.+.++.++..+..+.+..- .....+.+...+.|....+|..+..++..+...
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--- 305 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE--- 305 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc---
Confidence 234566666777788888777777666221 133455666677888899999999988887654
Q ss_pred HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842 548 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 548 ~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
...........+.+..+|..+..++..+
T Consensus 306 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 306 -----KAVAALLLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred -----chHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 2333444456777788888777776554
No 48
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.1e-08 Score=100.88 Aligned_cols=434 Identities=12% Similarity=0.082 Sum_probs=249.3
Q ss_pred hHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHH
Q 007842 125 WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDI 203 (587)
Q Consensus 125 ~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 203 (587)
+++-++.+..+.| ....+...+-.++.+..-++++....+.|-+.+++++.++.||+.|+.+...+.... +...+.+
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f 180 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHF 180 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHh
Confidence 4455555555444 333333344445566666778899999999999999999999999999999988875 5667788
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-----hhhhchHHHHHHhccC-----------CcHHHHHHHHHHHHH
Q 007842 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHILPVIVNFSQD-----------KSWRVRYMVANQLYE 267 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d-----------~~~~vR~~a~~~l~~ 267 (587)
.+-...++.+.+..|-.+++..+-.++..-++. ...+.++..++++... ++|..+...++.|.-
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 888889999999888888888887777654331 1223333344443321 345555555555554
Q ss_pred HHHHhCCCccccchHHHHHHhcC--CChHH----HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHH
Q 007842 268 LCEAVGPEPTRMDLVPAYVRLLR--DNEAE----VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 341 (587)
Q Consensus 268 ~~~~~~~~~~~~~l~~~l~~~l~--d~~~~----vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~ 341 (587)
++.. .....+.+-.++-+... |.+.+ +-..++.++..+- .+.......+..+-+++.+++-.+|..+..
T Consensus 261 LGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 261 LGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred hcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 4432 11111122222222221 11111 2222222222221 122222333455555566666666666666
Q ss_pred HHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007842 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (587)
Q Consensus 342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l 421 (587)
.|..+...-+. ..+.=-..+..+++|.+..+|..|++....+...-. ...++..+..++...+...|..++.-+
T Consensus 336 ~L~r~V~~d~~--avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I 409 (866)
T KOG1062|consen 336 MLLRVVQQDPT--AVQRHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKI 409 (866)
T ss_pred hHHhhhcCCcH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66655543221 122334567889999999999999998887765432 245566666667767888888888888
Q ss_pred HHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh-ChHH--HhhhhHHHHHh--hccCCchhHHHHHH
Q 007842 422 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEW--AMQHITPQVLE--MINNPHYLYRMTIL 496 (587)
Q Consensus 422 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~--~~~~l~~~l~~--~l~d~~~~~R~~a~ 496 (587)
..+++.+.++. ...+..+++.+...-.-|+.-+...+-.++..- +... ....+...+.. ...-+....-+.+.
T Consensus 410 ~~laEkfaP~k--~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 410 AELAEKFAPDK--RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred HHHHHhcCCcc--hhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 88887776542 234555555555544455555555554444322 2211 01111111111 11123455678899
Q ss_pred HHHHHhhcccCh--------HHHHhhHHHHHHhhcC--CCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCC
Q 007842 497 RAISLLAPVMGS--------EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPD 566 (587)
Q Consensus 497 ~~l~~l~~~~~~--------~~~~~~il~~l~~~l~--d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d 566 (587)
++||..++.+-. ......+...+.+.+. ..+..+|..++.++..+...+... .+.+...+..+....|
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~ 565 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLD 565 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhccccc
Confidence 999998742211 1112333444444332 224788899999998888766543 3456666666667777
Q ss_pred ccHHHHHHH
Q 007842 567 VDVRFFATQ 575 (587)
Q Consensus 567 ~~Vr~~a~~ 575 (587)
-++|..|.+
T Consensus 566 ~elQQRa~E 574 (866)
T KOG1062|consen 566 TELQQRAVE 574 (866)
T ss_pred HHHHHHHHH
Confidence 777776654
No 49
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.33 E-value=3.3e-10 Score=100.17 Aligned_cols=340 Identities=13% Similarity=0.118 Sum_probs=220.6
Q ss_pred hHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-
Q 007842 242 ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E- 314 (587)
Q Consensus 242 l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~- 314 (587)
++|-+.+++ +....-.+..|+.++.+++....... ....-+|.|++++.+.+.+||..++.+|+.++..-.. +
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~ 194 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY 194 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence 455555555 33334456678888988887544321 2346799999999999999999999999998753211 1
Q ss_pred HHHHhHhHHHHHhccCC--cHHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh
Q 007842 315 LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 315 ~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (587)
......+..+..++..+ +...-+.+.+.|++++..-. ......+.+|++.+++...+++|-..|+++++-+...-
T Consensus 195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 11123344444444433 34666778888988876432 23356788999999999999999999999999887532
Q ss_pred chh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-----HHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842 390 GID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDKVYSIRDAAANNLK 461 (587)
Q Consensus 390 ~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
... .+-..+.+.+.+++.+++..+..-++..++.+... .+.- .--.++.+..+|+++...+|..|+-+++
T Consensus 275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG--~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG--SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec--CccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 111 11234457788889998888877777777776542 2211 1224566777789999999999999998
Q ss_pred HHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC-h-HH----HHhhHHHHHHhhcCCCChhHHH
Q 007842 462 RLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-S-EI----TCSRLLPVVINASKDRVPNIKF 532 (587)
Q Consensus 462 ~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~-~-~~----~~~~il~~l~~~l~d~~~~vR~ 532 (587)
++....... .....++|.+..++...++.+|..|++++.+...... . +. +...++..+.+++.-.+..+-.
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 886422111 1346789999999999999999999999999865322 1 11 1234555666666544444556
Q ss_pred HHHHHHHHhhhhhchH------------HHH--hhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 533 NVAKVLQSLIPIVDQS------------MVE--KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 533 ~~~~~l~~l~~~~~~~------------~~~--~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
.++.++.++...-..+ .+. ......+..+....+..+ -.+|++.+.+++|.
T Consensus 433 v~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~i---y~KAYsIIe~fFge 497 (526)
T COG5064 433 VALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTI---YDKAYSIIEKFFGE 497 (526)
T ss_pred hhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHH---HHHHHHHHHHHccc
Confidence 6677777765431110 111 123345555544444444 45566777777664
No 50
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.31 E-value=2.3e-08 Score=94.87 Aligned_cols=471 Identities=12% Similarity=0.078 Sum_probs=268.1
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccC-CcHHHHHHHHHHhccccccCCCcchHhhhHHH
Q 007842 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (587)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (587)
-.+.+..++.|.-.|+..-..+++++.. ..+... ..-..+.+... .++.++..+.+.|-..++ | +.+..+-.+
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~-tedvlm-~tssiMkD~~~g~~~~~kp~AiRsL~~Vid--~--~tv~~~er~ 141 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKL-TEDVLM-GTSSIMKDLNGGVPDDVKPMAIRSLFSVID--G--ETVYDFERY 141 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhc-chhhhH-HHHHHHHhhccCCccccccHHHHHHHHhcC--c--chhhhHHHH
Confidence 3466778888888998887777776532 111110 00112222222 233555555555544443 1 333344455
Q ss_pred HhhhhcchhhHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCCCC---------cchhhHHhhhHhhcCCCChH
Q 007842 91 LETLCTVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWF---------TARVSACGLFHIAYPSAPDI 159 (587)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~---------~~r~~a~~~l~~~~~~~~~~ 159 (587)
+.+..-++.+.+|.+|+..-..+...-.. ..+.++.-.-+..+.+.++. ..-++-...+|.++..-..
T Consensus 142 l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~- 220 (898)
T COG5240 142 LNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT- 220 (898)
T ss_pred hhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc-
Confidence 66666788888988887666554321110 11111111222222222211 0111111122222211000
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHH--HhHHHHHHhhc-cchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAA--SNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~--~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
-+...--+.+....+. .++...+ ..+......+. +......+.|.+..-++|.-+.|...+++.+.+++...-..
T Consensus 221 -dkma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~ 298 (898)
T COG5240 221 -DKMAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS 298 (898)
T ss_pred -cHHHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH
Confidence 0111111112222221 2222111 11112222221 24566778888888889988899988888888877654223
Q ss_pred hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 007842 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 316 (587)
......+..+..++..+....|-+|++.+.+++...+.... ..-+-+..++.|.+..+...|+.. +.+. |.+..
T Consensus 299 ~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr~IstyAITt---LLKT-Gt~e~ 372 (898)
T COG5240 299 QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENRTISTYAITT---LLKT-GTEET 372 (898)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccccchHHHHHH---HHHc-Cchhh
Confidence 35666778888888888888999999999999987654322 122445667778776665555444 4443 44444
Q ss_pred HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh-cCCChHHHHHHHHhhhhhhhhhchhhHH
Q 007842 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLS 395 (587)
Q Consensus 317 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 395 (587)
...++..+..+..|-+...+..++.++..++-.++... ..++.++...| +.+.-+.+..++.++..+.+..... .
T Consensus 373 idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--k 448 (898)
T COG5240 373 IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--K 448 (898)
T ss_pred HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--H
Confidence 46777777777777777778888888888877776532 12334444333 3556788899999998888776433 2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhh
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH 475 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 475 (587)
+..+..+..+++|..+. +.++..++.+++..+...-....+-.+.+.+-=++.-||.+|+.+|..+.-.....+....
T Consensus 449 EraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s 526 (898)
T COG5240 449 ERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS 526 (898)
T ss_pred HHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH
Confidence 56677777788776542 2344555555554322211122333344444445678999999999988765544444566
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 476 ITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
+...+...++|.+..+|..|..++..+-
T Consensus 527 v~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 527 VENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7777888899999999999998888774
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.31 E-value=2.3e-10 Score=103.49 Aligned_cols=186 Identities=18% Similarity=0.250 Sum_probs=134.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhhhHHH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (587)
Q Consensus 397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 469 (587)
.+.+.+..--.+.+|..|..++..+..+...-. .+.+.+. +.+.+...+.|....|-..|+.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 344445444577899999999999999887651 1222222 235666778888889999999999999999887
Q ss_pred HH--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhH-HHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 470 EW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 470 ~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i-l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
.+ +.+.++|.+++.+.+++..+|..|..++..+...++. ...+ .+.+....+++++.+|..++..+..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 64 4678999999999999999999999999999998871 1344 7888889999999999999999999998877
Q ss_pred --hH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 547 --QS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 547 --~~-----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
.. ...+.+.+.+.++++|++++||..|..++..+.+..+
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 11 2346799999999999999999999999999988765
No 52
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.30 E-value=2.8e-09 Score=102.78 Aligned_cols=186 Identities=25% Similarity=0.351 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (587)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (587)
...+.+..++.++++.+|..+...++.+.. ...+|.+..++.|.++.||..++.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 456667777788888999888888665543 4567788888888888999988887776542 233
Q ss_pred HHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHh
Q 007842 243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCR 309 (587)
Q Consensus 243 ~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~ 309 (587)
.+.+...++ |+++.||..++..|+.+... .-+..++..++|.. +.+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 444444444 78899999999998876542 23555555566544 2345444444444432
Q ss_pred hhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842 310 ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 310 ~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (587)
+...+.+...+.+....||..++.+++.+.... ..+.+.+...+.+.+..+|..++..++.+.
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 222344455555555555555555555554221 233444555555555555555555555443
No 53
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.30 E-value=7.9e-11 Score=114.77 Aligned_cols=253 Identities=18% Similarity=0.216 Sum_probs=211.7
Q ss_pred CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCC
Q 007842 330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (587)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~ 409 (587)
-++..-|......|......++.+.....++|.+...+.-.+ --...+.-+-.+.+.+....+...++|.+.++++..
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~ 342 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP 342 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence 355666777777777777777777778888898887776443 122233444445555555567788999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCch
Q 007842 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 489 (587)
Q Consensus 410 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 489 (587)
+..+|...++.+......+..+.+.+.+.|.+...+.|+++.+|+.++.++..++..++......+++..+..+-.|...
T Consensus 343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~ 422 (690)
T KOG1243|consen 343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG 422 (690)
T ss_pred chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999887778899999888889999
Q ss_pred hHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccH
Q 007842 490 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 569 (587)
Q Consensus 490 ~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~V 569 (587)
.+|....-|+|+++...........+...+.+.++|+...-|.++..++....+.+........++|.+.-+.-|++..|
T Consensus 423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence 99999999999999887665433333445666799999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 007842 570 RFFATQAIQSIDHVM 584 (587)
Q Consensus 570 r~~a~~al~~l~~~~ 584 (587)
|..|.+++...-..+
T Consensus 503 r~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 503 RDTAEKAIRQFLEKL 517 (690)
T ss_pred hhHHHHHHHHHHhhh
Confidence 999999998776544
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4e-09 Score=104.13 Aligned_cols=517 Identities=14% Similarity=0.130 Sum_probs=309.4
Q ss_pred CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcH-HHHHHHHHHhccccccCCCcchHh
Q 007842 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLAMAEELGVFIPYVGGVEHAH 85 (587)
Q Consensus 7 ~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~ 85 (587)
+...+.++.+.+.|.-+..|..|++.+-. ...+|.+ ...+.|=+..+.+.++ +..+.+-.-+.+.+. +.++..-
T Consensus 11 ~k~ei~elks~l~s~~~~kr~~a~kkvIa-~Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~ 85 (734)
T KOG1061|consen 11 KKGEIPELKSQLNSQSKEKRKDAVKKVIA-YMTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAI 85 (734)
T ss_pred hhhhchHHHHHhhhhhhhhHHHHHHHHHh-cCccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHH
Confidence 34467888888888888899999876643 2445643 2356665555544433 444444444555444 3334444
Q ss_pred hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH-HHHHH
Q 007842 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL 164 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l 164 (587)
..++.+.+=..|++|.+|-.|++.++.+. -+.+.+.+..-+.+..++++..+|..+.-....++..-.+. ....+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl 161 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL 161 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence 45666667778999999999988877652 22344555555556777777778877776665655443332 45678
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh-hhhchH
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHIL 243 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~ 243 (587)
.+.+..++.|.+|.|-..+..++..+.+.-.+........+++..++..-+.-.-.+-+.++..++...++.. ....+.
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~ 241 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDIC 241 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHH
Confidence 8999999999999999999999999888754322222222222222222222222334556666666666532 233455
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--------
Q 007842 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-------- 313 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------- 313 (587)
..+...+++.+..|-..+.+.+-.....+.. +.....+-|.+..++.... ++...++..+.-+....+.
T Consensus 242 ~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~ 320 (734)
T KOG1061|consen 242 ERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKV 320 (734)
T ss_pred HHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHe
Confidence 5556666666666666666766666655443 1112234444444444443 7777777766665554321
Q ss_pred ------------------------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcC
Q 007842 314 ------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 369 (587)
Q Consensus 314 ------------------------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 369 (587)
.....+++.-+.....+.+.+.-+.++++++.++....+. +..++.++.+++-
T Consensus 321 Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~ 397 (734)
T KOG1061|consen 321 FFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLET 397 (734)
T ss_pred eeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhh
Confidence 1112345556666666777777788888888888665443 5677888888876
Q ss_pred CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 448 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 448 (587)
....|.+.+...+..+...+.... +.+++.+...... .+++.|.+.+..++..+..+.. ..+++..++..+.|+
T Consensus 398 ~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~~dE 472 (734)
T KOG1061|consen 398 KVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENFKDE 472 (734)
T ss_pred cccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhcccc
Confidence 656666677777777776665432 4455555443333 5788999999999998887754 345677788888888
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-ccC-CchhHHHHHHHHHHHhhcccChHHHHhhHH---HHHHhhc
Q 007842 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INN-PHYLYRMTILRAISLLAPVMGSEITCSRLL---PVVINAS 523 (587)
Q Consensus 449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d-~~~~~R~~a~~~l~~l~~~~~~~~~~~~il---~~l~~~l 523 (587)
...|+.....+.-++.-..+. -.+.++..++.. ..| .++.+|-.++.--.-+. .++....+.+. |.+....
T Consensus 473 ~~~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs--~~~~~a~~v~~~~kP~is~~~ 548 (734)
T KOG1061|consen 473 TAEVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS--EDPLIAKDVVLAEKPLISEET 548 (734)
T ss_pred hHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh--cCHHHHHHHHhcCCCccccCC
Confidence 888887666554444333222 123445444443 233 35677877776555554 23221111111 3333322
Q ss_pred CCCChhHHHHHHHHHHHhhhhh
Q 007842 524 KDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 524 ~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
....+.+-.....-++.++..+
T Consensus 549 ~~~~p~~le~l~~~i~tlssVY 570 (734)
T KOG1061|consen 549 DSLDPTLLEELLCDIGTLSSVY 570 (734)
T ss_pred CCCCchHHHHHHHhhcccccee
Confidence 2256677777766666666544
No 55
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.3e-09 Score=104.85 Aligned_cols=278 Identities=15% Similarity=0.156 Sum_probs=177.3
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc
Q 007842 251 QDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 329 (587)
++.+...|..+......++..-.+ ......+...+..+..|.+..||..|++++-.+.+.+.- .+.......+++.
T Consensus 168 ~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~ls 244 (823)
T KOG2259|consen 168 SISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLS 244 (823)
T ss_pred hcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhc
Confidence 334444555555444433322111 112234555577788889999999999999888873221 1334566678889
Q ss_pred CCcHHHHHHHHHHHHccccccc--------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842 330 DSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 401 (587)
|.+..||.+|++.+..++...+ .....+..+..+...+.|.+..||..|+++|+.+..... +. +...
T Consensus 245 D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~----i~QT 319 (823)
T KOG2259|consen 245 DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EI----IQQT 319 (823)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HH----HHHH
Confidence 9999999999888777665551 122345667778888999999999999999998765431 11 1112
Q ss_pred HHH-Hhc-CCChHHHHHHHHHH---HHHHH--hhChhhhH-------HHHH-----HHHHHhcCCCchHHHHHHHHHHHH
Q 007842 402 IVE-LAE-DRHWRVRLAIIEYI---PLLAS--QLGVGFFD-------DKLG-----ALCMQWLQDKVYSIRDAAANNLKR 462 (587)
Q Consensus 402 l~~-~~~-~~~~~vR~~~~~~l---~~l~~--~~~~~~~~-------~~l~-----~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
+-+ ++. +.-|+.....-+.+ +.++. .++.+.-. ..++ ..+...++|+-.+||.+|+..++.
T Consensus 320 LdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~ 399 (823)
T KOG2259|consen 320 LDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCS 399 (823)
T ss_pred HHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHH
Confidence 211 111 11222211111111 11110 01111000 1122 336778899999999999999998
Q ss_pred HHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 463 l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
++..- +. |....+..+.+|++|....+|..|+.++..++.... ..+..++.++..+.|.+++||.+.-..|+..
T Consensus 400 La~ss-P~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 400 LATSS-PG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHcCC-CC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 87532 22 566778889999999999999999999999987633 3467889999999999999998888877653
No 56
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4.1e-06 Score=87.14 Aligned_cols=520 Identities=12% Similarity=0.092 Sum_probs=304.3
Q ss_pred CCcHHHHHHHHHHhccccccCCCcchHhhhHHH-HhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc-
Q 007842 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA- 135 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~- 135 (587)
...+++.+++..++-++.+- ...+.+.+... +..++.-+-..+-+.++..+..+++.+++ ....++.|-+..++.
T Consensus 323 s~~~e~~q~a~q~l~~il~~--sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~l 399 (1176)
T KOG1248|consen 323 SLIEELVQAASQSLKEILKE--SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCDL 399 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHh
Confidence 34556667777776555431 11122223222 45555555556667777777777777776 334555555554443
Q ss_pred --CCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhh--
Q 007842 136 --GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-- 211 (587)
Q Consensus 136 --~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~-- 211 (587)
++++..+...=..+|......+|+..-.++|+=. ..+.....|.=..-.|........-..+.++++|+...+.
T Consensus 400 r~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K 477 (1176)
T KOG1248|consen 400 RASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLK 477 (1176)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHH
Confidence 4444444433344555555555655444444332 1222222332222222222222222345566777665553
Q ss_pred ----hCCch---hHHHHHHHHHHHHhhhcC---h-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC------
Q 007842 212 ----QDDQD---SVRLLAVEGCAALGKLLE---P-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------ 274 (587)
Q Consensus 212 ----~d~~~---~vr~~a~~~l~~l~~~~~---~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~------ 274 (587)
++... .++....+.+.-+-.+|. + ......+.|.+...+... +..|...+..|..+.....+
T Consensus 478 ~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e 556 (1176)
T KOG1248|consen 478 AKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAE 556 (1176)
T ss_pred HHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHH
Confidence 11211 122222333322222221 1 222445667766666544 48899999988888775311
Q ss_pred -----CccccchHHHHHHhcCCC------hHHHHHHHHHhHH-HHHhhhCHHHHHHhHhHHHHHhccCCcHHH----HHH
Q 007842 275 -----EPTRMDLVPAYVRLLRDN------EAEVRIAAAGKVT-KFCRILNPELAIQHILPCVKELSSDSSQHV----RSA 338 (587)
Q Consensus 275 -----~~~~~~l~~~l~~~l~d~------~~~vr~~a~~~l~-~l~~~~~~~~~~~~i~~~l~~~~~d~~~~v----r~~ 338 (587)
......++|.+.+..+.. ....|...+.... ......+. .....+...+.....+.+..+ +..
T Consensus 557 ~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~s 635 (1176)
T KOG1248|consen 557 NKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLS 635 (1176)
T ss_pred HHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHH
Confidence 012235788887776533 2344444444444 22332232 223444555555666654433 344
Q ss_pred HHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHH
Q 007842 339 LASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVR 414 (587)
Q Consensus 339 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR 414 (587)
.+..+..++.......+. .+..+.-...+..+..++..+...|..++..-..+ +....+...+.+-+++...-.|
T Consensus 636 lLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~ 714 (1176)
T KOG1248|consen 636 LLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQ 714 (1176)
T ss_pred HHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHH
Confidence 445555555554443332 23333344445557899999999999988762222 2234445555555666777888
Q ss_pred HHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH--HH---hChHH---HhhhhHHHHHhhc
Q 007842 415 LAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA--EE---FGPEW---AMQHITPQVLEMI 484 (587)
Q Consensus 415 ~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~--~~---~~~~~---~~~~l~~~l~~~l 484 (587)
...+.++..+.+..+.+. +....+|-++-.+++.+..-|..|..+|-.+. .. .|.+. ..+.+++.+...+
T Consensus 715 ~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl 794 (1176)
T KOG1248|consen 715 ASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGL 794 (1176)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhh
Confidence 889999999998887443 23444444444558999999999999988887 32 23322 3455666666655
Q ss_pred cCCchhHHHHHHHHHHHhhccc---ChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHH
Q 007842 485 NNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCL 558 (587)
Q Consensus 485 ~d~~~~~R~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l 558 (587)
......++...+-+++.+...+ ....+...++..+.-++...++.+|.+|+..+..++..++.. .+.+.++|.+
T Consensus 795 ~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 795 VGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH
Confidence 4445555555577777776533 334467888888889999999999999999999999998876 4556789999
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 559 VELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 559 ~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
-.++.|....+|.....-|+.+.+..|
T Consensus 875 l~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 875 LALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987665
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.27 E-value=1.4e-09 Score=104.36 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=91.1
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHH
Q 007842 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 400 (587)
+..+...+.|.++.||..++++|+.+. .+...+.+..++++.++.||..++.+++.... .-.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHH
Confidence 344444455555555555555555443 12333444555555555555555544443111 1122
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 007842 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480 (587)
Q Consensus 401 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 480 (587)
.+...++|+++.+|..++..++.+... ...|.+...+.|.++.||.+|+..++.+.. . ...+.+
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~l 214 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGVC 214 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHHH
Confidence 333444455555555555555544321 122333444555555555555555543321 1 112223
Q ss_pred HhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHH
Q 007842 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 560 (587)
Q Consensus 481 ~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~ 560 (587)
.....++....+..+..++... |. +.+++.+..+++|+. +|..++.+++.+... ..++.|..
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------~av~~L~~ 276 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGDV--------EAAPWCLE 276 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc--------chHHHHHH
Confidence 3323333333333333233222 11 244455555555433 555555555554431 34444444
Q ss_pred hcCCCCccHHHHHHHHHHHH
Q 007842 561 LTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 561 l~~d~d~~Vr~~a~~al~~l 580 (587)
.+.|+. ++..|..++++|
T Consensus 277 ~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 277 AMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HhcCcH--HHHHHHHHHHHh
Confidence 444433 555555555544
No 58
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=2.8e-07 Score=97.38 Aligned_cols=487 Identities=16% Similarity=0.145 Sum_probs=282.5
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHh
Q 007842 92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL 171 (587)
Q Consensus 92 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l 171 (587)
...+..+...+|-.|++++..+.+.-+.--..+.+..-+..-..|....+|.+|+.++|.+.-.- ++....+...+..-
T Consensus 822 l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i~er 900 (1692)
T KOG1020|consen 822 LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQIIER 900 (1692)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHHhh
Confidence 33445677899999999999998764433334445555555556677889999999998765443 55666777888888
Q ss_pred cCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-h----hhhch---H
Q 007842 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-D----CVAHI---L 243 (587)
Q Consensus 172 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~----~~~~l---~ 243 (587)
..|+...||+.++..+..++...+.-....++..-+..-.+|++..+.+.+.+.+-.+.-.-.++ . ....+ .
T Consensus 901 IlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~ 980 (1692)
T KOG1020|consen 901 ILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEV 980 (1692)
T ss_pred cCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHH
Confidence 89999999999999999999876543333344444444567888888888888887764221111 0 01111 1
Q ss_pred HHH---HHhccCCcHHHHHHHHHHHHH--HHHHhCCC--ccccchHHHHHHhc------------CCChHHHHH-HHHHh
Q 007842 244 PVI---VNFSQDKSWRVRYMVANQLYE--LCEAVGPE--PTRMDLVPAYVRLL------------RDNEAEVRI-AAAGK 303 (587)
Q Consensus 244 ~~l---~~~~~d~~~~vR~~a~~~l~~--~~~~~~~~--~~~~~l~~~l~~~l------------~d~~~~vr~-~a~~~ 303 (587)
..+ ..+..+..+..=...++.-.. ......+. ......+..+..++ .+++.++|. +++..
T Consensus 981 ~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lst 1060 (1692)
T KOG1020|consen 981 DVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLST 1060 (1692)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHH
Confidence 111 112222221111111000000 00000000 00112222222222 123344554 45556
Q ss_pred HHHHHhhhCH---HHHHHhHhHHHHHhccC-CcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhcCCChHHHHH
Q 007842 304 VTKFCRILNP---ELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRLN 377 (587)
Q Consensus 304 l~~l~~~~~~---~~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (587)
|..++...+. ..+...+.|++..-... ...++-...+..+..+..... .+.+...+-..+.+.+-..+......
T Consensus 1061 L~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~ 1140 (1692)
T KOG1020|consen 1061 LFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVE 1140 (1692)
T ss_pred HHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 6666665432 13445677777654322 345666677777666655442 34556666666777766666666777
Q ss_pred HHHhhhhhhhhhchhh-HHhhHHHHHHHHh---c-C--CC------hHHHHHHHHHHHHHHHhhC--------h------
Q 007842 378 IISKLDQVNQVIGIDL-LSQSLLPAIVELA---E-D--RH------WRVRLAIIEYIPLLASQLG--------V------ 430 (587)
Q Consensus 378 a~~~l~~l~~~~~~~~-~~~~~l~~l~~~~---~-~--~~------~~vR~~~~~~l~~l~~~~~--------~------ 430 (587)
++.+++.+........ ....+...+...+ + . ++ +..+. .+-.+|.+++.+. +
T Consensus 1141 ~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~ 1219 (1692)
T KOG1020|consen 1141 AVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEG 1219 (1692)
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhh
Confidence 8888888876532221 1111111111111 1 1 22 23322 3456777777541 1
Q ss_pred hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCch-hH-HHHHHHHHHHhhcc---
Q 007842 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LY-RMTILRAISLLAPV--- 505 (587)
Q Consensus 431 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~~-R~~a~~~l~~l~~~--- 505 (587)
+...+.+...+.-+..+.+..+|..|+..+|.++-.-..-++...+...+...+.+.+. .. +..++..+..+...
T Consensus 1220 ~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~ 1299 (1692)
T KOG1020|consen 1220 ETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEK 1299 (1692)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 13445667777777788889999999999999997655444445555555555554432 22 44444444333210
Q ss_pred ---------------------------cCh----HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhH
Q 007842 506 ---------------------------MGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTI 554 (587)
Q Consensus 506 ---------------------------~~~----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i 554 (587)
.|. ......+++.++..+-|.+..+|..+++.+..+..+---.+ ...
T Consensus 1300 ~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP--~~c 1377 (1692)
T KOG1020|consen 1300 KLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP--VHC 1377 (1692)
T ss_pred HHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc--cch
Confidence 011 11345677778888888999999999999988875411011 357
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 555 RPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 555 ~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+|.|..+.+|+....|..|-.-|..+.+
T Consensus 1378 vPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1378 VPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred hhhheeecCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888765
No 59
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=8.6e-07 Score=86.84 Aligned_cols=407 Identities=14% Similarity=0.141 Sum_probs=201.3
Q ss_pred HHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHH
Q 007842 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 205 (587)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 205 (587)
+-+-+..++++....+|..|+.++..++-.- |+....-+|-|.+-+.|++|.|..+|...++.++...+.. +. .+-|
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn-yL-~LAP 221 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN-YL-QLAP 221 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc-cc-cccH
Confidence 3333444444444445555555444443332 2334445666777788888888888888888888775432 22 2345
Q ss_pred HHHHhhhC-CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH-h--CC-C--ccc
Q 007842 206 IFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-V--GP-E--PTR 278 (587)
Q Consensus 206 ~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~-~--~~-~--~~~ 278 (587)
.+-.++.+ .+.-+-...++.++++...-|. .-..++|-+.+++...+. .....+++..++.. + |- + ...
T Consensus 222 ~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asi 297 (877)
T KOG1059|consen 222 LFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASI 297 (877)
T ss_pred HHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHH
Confidence 54444432 2222334445555555543222 234456666666554321 11222232222221 1 10 1 111
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHh
Q 007842 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (587)
+-.+.-+..++.|.+++.+...+-+++.++...+... ..--..+.+++.|.++.+|.-++..+..+.. ++... .
T Consensus 298 qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs---kkNl~-e 371 (877)
T KOG1059|consen 298 QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMVS---KKNLM-E 371 (877)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHhh---hhhHH-H
Confidence 1234455667788888888888888888887644331 3334566778888888888888887766652 32222 2
Q ss_pred HHHHHHH-hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh---hH
Q 007842 359 LLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD 434 (587)
Q Consensus 359 l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~ 434 (587)
++..++. +...+....|...+..+-.++..-. + ..+.|-.|- +..+..+++.-|.+. ..
T Consensus 372 IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn---Y---------~~ItdFEWY-----lsVlveLa~l~~~~~G~~I~ 434 (877)
T KOG1059|consen 372 IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN---Y---------QYITDFEWY-----LSVLVELARLEGTRHGSLIA 434 (877)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh---h---------hhhhhHHHH-----HHHHHHHHhccccchhhHHH
Confidence 3333333 3333323455444444433332211 0 011121221 222333333222111 11
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh--h-ccCCchhHHHHHHHHHHHhhcccChHHH
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE--M-INNPHYLYRMTILRAISLLAPVMGSEIT 511 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--~-l~d~~~~~R~~a~~~l~~l~~~~~~~~~ 511 (587)
++++.+. =..+.+|..++..+..+...- +.. . .+..-..+-.+|++++|.++..+...
T Consensus 435 eQi~Dv~-----iRV~~iR~fsV~~m~~Ll~~~------------~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~-- 495 (877)
T KOG1059|consen 435 EQIIDVA-----IRVPSIRPFSVSQMSALLDDP------------LLAGSAQINSQLCEVLYAAAWILGEYSEFVENP-- 495 (877)
T ss_pred HHHHHHh-----eechhhhHhHHHHHHHHHhch------------hhccchhhccchhHHHHHHHHHHHHHHHHhhCH--
Confidence 2222222 134556666655555544310 100 0 11112456667888888887755432
Q ss_pred HhhHHHHHHhhcCCC-ChhHH----HHHHHHHHHhhhhhchH-------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007842 512 CSRLLPVVINASKDR-VPNIK----FNVAKVLQSLIPIVDQS-------MVEKTIRPCLVELTEDPDVDVRFFATQAIQS 579 (587)
Q Consensus 512 ~~~il~~l~~~l~d~-~~~vR----~~~~~~l~~l~~~~~~~-------~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~ 579 (587)
..++..+++--.+- ...+. .++.+.++.++....+. .....++..+.++....|-+|+.+|..++.-
T Consensus 496 -~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~l 574 (877)
T KOG1059|consen 496 -NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLEL 574 (877)
T ss_pred -HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHH
Confidence 33344444332221 12233 34444444555444332 2235566777778888899999998888776
Q ss_pred HHH
Q 007842 580 IDH 582 (587)
Q Consensus 580 l~~ 582 (587)
+..
T Consensus 575 i~~ 577 (877)
T KOG1059|consen 575 IRL 577 (877)
T ss_pred HHH
Confidence 543
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=5.4e-07 Score=89.46 Aligned_cols=410 Identities=16% Similarity=0.135 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (587)
..--+...+.+=+++++.-|--.|+.++|.++. ++....+.|.+..+++..++.+|+.|+-+...+....++ ..
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s----~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~ 177 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICS----PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LV 177 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCC----HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HH
Confidence 334455566666777777777777777777764 566788999999999999999999999999888877765 35
Q ss_pred hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCC---------------ChHHHHHHHHHh
Q 007842 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRD---------------NEAEVRIAAAGK 303 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~ 303 (587)
+.+.+...+++.+.+..|-..++..+..+|+.-+... ...++++-|+..+++ .+|-++...++.
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 6677778888888888888888888888876522111 112244444433321 245556556666
Q ss_pred HHHHHhhhCHH-HHHHhHhHHHHHhccCC---cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHH
Q 007842 304 VTKFCRILNPE-LAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 379 (587)
Q Consensus 304 l~~l~~~~~~~-~~~~~i~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (587)
|.-++..-.+. .....++..+.+-.+.+ -..+-..++.++..+- ........-+.++-+++...+.++|..++
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 66555432211 12222333332222111 1233344444433332 22233344556667777777778888888
Q ss_pred HhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 380 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 380 ~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
+.|..+.+.-. ...+.--..+.++++|++..+|..+++..-.+.+.-......+. ++.++...+...|...+.-
T Consensus 335 n~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~e----Ll~fL~~~d~~~k~~~as~ 408 (866)
T KOG1062|consen 335 NMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKE----LLEFLESSDEDFKADIASK 408 (866)
T ss_pred hhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHH----HHHHHHhccHHHHHHHHHH
Confidence 88877765322 11234455678889999999999999998888776554444444 4445555688899999999
Q ss_pred HHHHHHHhChH--HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHh--hcCCCChhHHHHHH
Q 007842 460 LKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN--ASKDRVPNIKFNVA 535 (587)
Q Consensus 460 l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~--~l~d~~~~vR~~~~ 535 (587)
+..+++.+.++ |+.+.++..+...-+--+..+-.+.+..+++-........+ ..+.-.+.. .+.-..+..-..+.
T Consensus 409 I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~-~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 409 IAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAV-LRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHH-HHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 99999988764 66666555544322212233333444444333221111111 111111111 11112344455677
Q ss_pred HHHHHhhhhhch--------HHHHhhHHHHHHHhc--CCCCccHHHHHHHHHHHHHHhhc
Q 007842 536 KVLQSLIPIVDQ--------SMVEKTIRPCLVELT--EDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 536 ~~l~~l~~~~~~--------~~~~~~i~~~l~~l~--~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
+++|+-...+-. ..-.+.+...+.+++ ...+..++.+|..|+-+|..-+.
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 777775522111 112244555555532 23347789999988887765443
No 61
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.18 E-value=8.2e-10 Score=97.75 Aligned_cols=300 Identities=13% Similarity=0.099 Sum_probs=192.7
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---H-HHHHhHhHHHHHhcc-CCcHHHHHHHHHHHHccccccchhH---
Q 007842 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E-LAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDA--- 354 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~-~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~--- 354 (587)
|-+.+.+.+.+-+.+..+..-+..+...-.. + .+...++|.+.+++. ......+..|++++.++++.-..+.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4444434444444444444444444332111 1 122345677777763 3445667788888888876543211
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--h-hHHhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhC
Q 007842 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~--~vR~~~~~~l~~l~~~~~ 429 (587)
.....+|.+.++|.+.+.+||..++++|+.++..... + .+....+..+..++.+... .+-..+.-.++.+++.-.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 1234578888888888889999999998888754321 1 1122334444444444332 333344555666665332
Q ss_pred hh---hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 430 VG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 430 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
+. .-....+|++.+++-..+++|-.-|+-+++.+...-... .....+.+.+.+++.+++..+..-+++++|++.
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 21 123567899999999999999888888888876522111 122345667889999999999999999999997
Q ss_pred cccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007842 504 PVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAI 577 (587)
Q Consensus 504 ~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al 577 (587)
...+... ..-.+++.+..++.++..++|..+|++++++....... .+...+.|.|..+++..+..+|.-|+.|+
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6433221 23456788888899999999999999999986543222 34467889999999999999999999998
Q ss_pred HHHHH
Q 007842 578 QSIDH 582 (587)
Q Consensus 578 ~~l~~ 582 (587)
.....
T Consensus 394 sNats 398 (526)
T COG5064 394 SNATS 398 (526)
T ss_pred Hhhhc
Confidence 87543
No 62
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.18 E-value=4e-06 Score=89.03 Aligned_cols=519 Identities=15% Similarity=0.123 Sum_probs=276.4
Q ss_pred Cccc-HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchH
Q 007842 7 PLYP-IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (587)
Q Consensus 7 ~~~~-~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 84 (587)
+++| +..++-.+..+-...|-.|++.+..+...-..-.+.+++...+.. ..|....||.++.+.+|+++-+ .++..
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~ 890 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELI 890 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHH
Confidence 3444 355666688888999999999999987654444555555555544 5677789999999999998763 34666
Q ss_pred hhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHH
Q 007842 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (587)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l 164 (587)
.....-+..-+.|+...||+.+++.++.++...+.=.....+.--+.+-.+|+...+...++..+..++=...+..
T Consensus 891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~---- 966 (1692)
T KOG1020|consen 891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEV---- 966 (1692)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcc----
Confidence 6666666555668899999999999999998776422222233333333344443344445554444332111100
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHH--hhccchhhhHHH-HHHHHhh---hCC-chhHHHHHHHHHHHHhhhcChhh
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAA--TVEPAHLKTDIM-SIFEDLT---QDD-QDSVRLLAVEGCAALGKLLEPQD 237 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~--~~~~~~~~~~l~-~~l~~l~---~d~-~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
+..+.+.+.....+..+.. .++ ..+.+.++ .++.... .+. ...+..+.+.-.-.+...+
T Consensus 967 ---------~d~~~~~~kI~~~~~vv~~~~d~~-~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~c---- 1032 (1692)
T KOG1020|consen 967 ---------NDQPAKARKISLEVDVVMSQVDLM-NDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHC---- 1032 (1692)
T ss_pred ---------cccHHHHHhhHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHH----
Confidence 0000010000000000000 000 11111111 1111111 000 1111111111111111110
Q ss_pred hhhchHHHHHHhccCCcHHHHHHHH-HHHHHHHHHhCCCcccc---chHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhC
Q 007842 238 CVAHILPVIVNFSQDKSWRVRYMVA-NQLYELCEAVGPEPTRM---DLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN 312 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~-~~l~~~~~~~~~~~~~~---~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~ 312 (587)
....+...-.....+++..+|..++ .+|..++...+.-..+. .+.|++..-... .+..+-...+..+..+.....
T Consensus 1033 l~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~ 1112 (1692)
T KOG1020|consen 1033 LVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVA 1112 (1692)
T ss_pred HHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhc
Confidence 1111222222233344455555444 56666666544322212 244444433222 224444445555554444332
Q ss_pred --HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh-HHHHhHHHHHHHhh-------cCC----ChHHHHHH
Q 007842 313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLL-------KDE----FPDVRLNI 378 (587)
Q Consensus 313 --~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l-------~d~----~~~vr~~a 378 (587)
.+.|...+-..+.+++-..+...-..+..+++.++..+... .....++..+.+.+ .++ +...-...
T Consensus 1113 ~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rs 1192 (1692)
T KOG1020|consen 1113 NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRS 1192 (1692)
T ss_pred cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Confidence 33555566666666666666666667777777777543221 12222333333222 122 11222233
Q ss_pred HHhhhhhhhhhc--------hh------hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh
Q 007842 379 ISKLDQVNQVIG--------ID------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (587)
Q Consensus 379 ~~~l~~l~~~~~--------~~------~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 444 (587)
+-+++.++++.. +. ...+.++..+.-+.++.+..+|..++..++.++-.-+.-+..+.+..++...
T Consensus 1193 iftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~i 1272 (1692)
T KOG1020|consen 1193 IFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEI 1272 (1692)
T ss_pred HHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHH
Confidence 445555555331 11 3345556666666788889999999999999876544444556667777666
Q ss_pred cCCCchHH--HHHHHHHHHHHHHH-------hChHH---------------------------HhhhhHHHHHhhccCCc
Q 007842 445 LQDKVYSI--RDAAANNLKRLAEE-------FGPEW---------------------------AMQHITPQVLEMINNPH 488 (587)
Q Consensus 445 l~d~~~~v--r~~a~~~l~~l~~~-------~~~~~---------------------------~~~~l~~~l~~~l~d~~ 488 (587)
+.|.+..+ +..+...+..+... -|.+| ....+++.+++..-+.+
T Consensus 1273 la~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d 1352 (1692)
T KOG1020|consen 1273 LADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRD 1352 (1692)
T ss_pred HhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccc
Confidence 66654333 34444444433211 01111 23456777777788889
Q ss_pred hhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 489 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 489 ~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
.++|..|++.+.-+...--. .....+|.++.+..|+....|..|-..+..|-.++..
T Consensus 1353 ~~~r~~aikvl~liL~QGLV--hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~g 1409 (1692)
T KOG1020|consen 1353 LQVRLVAIKVLKLILNQGLV--HPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEG 1409 (1692)
T ss_pred hHHHHHHHHHHHHHHHccCC--CccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999887652110 1256899999999999999999999999998776543
No 63
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.7e-07 Score=92.57 Aligned_cols=465 Identities=14% Similarity=0.103 Sum_probs=271.2
Q ss_pred HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc---CCCCcchhhHHhhhHhhcCCCChHH
Q 007842 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA---GEWFTARVSACGLFHIAYPSAPDIL 160 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~---~~~~~~r~~a~~~l~~~~~~~~~~~ 160 (587)
+..++=-+.++.++.|+..|+..--+++.+...-.+ .+=.+.++.. ......|..|+..+..+.+.. .
T Consensus 62 ate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised------viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~---m 132 (865)
T KOG1078|consen 62 ATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED------VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT---M 132 (865)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh------hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcc---h
Confidence 334444567788899999999888888887644322 2222233333 335667777777666665543 4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhh
Q 007842 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (587)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (587)
...+-.++.+..-|.++.++.++.-.--.+... .+...............+.+..++..+...+-.+-+.-. ...+
T Consensus 133 ~~~iery~kqaivd~~~avSsaalvss~hll~~--~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr--la~s 208 (865)
T KOG1078|consen 133 LQAIERYMKQAIVDKNPAVSSAALVSSYHLLPI--SFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--LAVS 208 (865)
T ss_pred hHHHHHHHHhHeeccccccchHHHHHHhhhhcc--cHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--HHHH
Confidence 556666777778888888876654333333322 223333333444444455555666667666666543211 0111
Q ss_pred chHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 007842 241 HILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (587)
Q Consensus 241 ~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
.++..+.. .+. ++--+...++........- ......+.+.+..++.+....|-..++.++..+....+.+. ..
T Consensus 209 klv~~~~~~~~~--~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~p 282 (865)
T KOG1078|consen 209 KLVQKFTRGSLK--SPLAVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--AP 282 (865)
T ss_pred HHHHHHcccccc--chhHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--ch
Confidence 22222211 111 1211211222211111111 11233578888888998889999999998888766554432 22
Q ss_pred HhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHH
Q 007842 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (587)
Q Consensus 320 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l 399 (587)
.+..+..+++.+...+|.++...|.+++...+.... .--+-+..++.|.+..+-.-|...+-+-+. +...+.++
T Consensus 283 avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm 356 (865)
T KOG1078|consen 283 AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLM 356 (865)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHH
Confidence 456667778889999999999999999866543211 112335667788877776666655554333 22234556
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (587)
Q Consensus 400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 478 (587)
..+..++.|-+...+..+++++..++..++.. +..+++.+.+.|. +...+-+.+.+.++-.++..... ..+..+.
T Consensus 357 ~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~ 432 (865)
T KOG1078|consen 357 KQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLE 432 (865)
T ss_pred HHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHH
Confidence 66666666555555555666666666555432 2334555555543 45566777888888777764332 2345566
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHH
Q 007842 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 558 (587)
Q Consensus 479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l 558 (587)
++.+.+.|.. .+.-+.+.++-++...+.........-.+.+...=.+..||.++..++.++. .+.......+.-.+
T Consensus 433 ~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vll 508 (865)
T KOG1078|consen 433 HLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLL 508 (865)
T ss_pred HHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHH
Confidence 6666666543 4566777777776543322111222223333333347888999999998887 33444456777788
Q ss_pred HHhcCCCCccHHHHHHHHHHHHH
Q 007842 559 VELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 559 ~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.+++.|.|..||.+|.-++..+.
T Consensus 509 kRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 509 KRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhcCchHHHHHHHHHHHHHhh
Confidence 88889999999999988888765
No 64
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3e-08 Score=95.72 Aligned_cols=318 Identities=17% Similarity=0.136 Sum_probs=200.0
Q ss_pred hHHHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 007842 217 SVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE 295 (587)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~ 295 (587)
.+|..+......++..-++ ....+.+..-+..+.+|.+++||..|++.+-.+.+.+ . .++.......+.+.|.+..
T Consensus 173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--k-L~~~~Y~~A~~~lsD~~e~ 249 (823)
T KOG2259|consen 173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--K-LSKACYSRAVKHLSDDYED 249 (823)
T ss_pred cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--c-ccHHHHHHHHHHhcchHHH
Confidence 4454444444444432222 1123345555778889999999999999988777632 2 2345677778889999999
Q ss_pred HHHHHHHhHHHHHhhhC--------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh
Q 007842 296 VRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~~--------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (587)
||.+|++.+.-++...+ +.......+..+...+.|-+|.||..++++++.+.... .+.+.+.+-..+..-+
T Consensus 250 VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdKKlms~l 328 (823)
T KOG2259|consen 250 VRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDKKLMSRL 328 (823)
T ss_pred HHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHHHHhhhh
Confidence 99999999988888762 12344567778888899999999999999998886432 1222222222222211
Q ss_pred cCC-ChHHHHHHHHhhhhhh------hhhchhh--------HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 007842 368 KDE-FPDVRLNIISKLDQVN------QVIGIDL--------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 368 ~d~-~~~vr~~a~~~l~~l~------~~~~~~~--------~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~ 432 (587)
+-. ...=|-....+=+... .....+. +.....-.+..-++|+.+.||.+++..+..++.. ...
T Consensus 329 RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~ 406 (823)
T KOG2259|consen 329 RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPG 406 (823)
T ss_pred hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCC
Confidence 000 0000000111111000 0111111 0011123344556889999999999999998864 234
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHH
Q 007842 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 512 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~ 512 (587)
|...-+.++...++|+...||..|+.+|..+..... ..+..++.+.+.+.|.+..+|++.-..|+..- ....+ ..
T Consensus 407 FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~-~i 481 (823)
T KOG2259|consen 407 FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLE-CI 481 (823)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHH-HH
Confidence 566778889999999999999999999999988643 34677899999999999999999988887642 22221 22
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
..++..+++.+. .-|.-|.....+++.+..+.+
T Consensus 482 ~m~v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 482 DMCVAHLLKNLG-KYPQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred HHHHHHHHHHhh-hCCCCcHHHHHHHHHHhccCh
Confidence 333333333332 133336777788888876654
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.15 E-value=1.1e-08 Score=98.49 Aligned_cols=240 Identities=14% Similarity=0.063 Sum_probs=142.4
Q ss_pred HHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHh
Q 007842 243 LPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321 (587)
Q Consensus 243 ~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 321 (587)
++.+...+ .|++..++..++..+...- ....+..+...+.|.++.||.+++++|+.+.. +...
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~ 119 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAE 119 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHH
Confidence 44444444 4556666665555543211 11236667777777777777777777765432 3344
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 401 (587)
+.+..+++++++.||.+++.+++.... .-.+.+..+++|.++.||..++.+++.+.. ...+|.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~ 182 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSEST 182 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHH
Confidence 566666677777777777766655321 113455666677777777777777776654 234555
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 007842 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481 (587)
Q Consensus 402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 481 (587)
+...+.|.++.||..++..+..+ |.+ .-.+.+.....++...++..+...++.. |. +..++.+.
T Consensus 183 L~~al~d~~~~VR~aA~~al~~l----G~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~ 246 (410)
T TIGR02270 183 LRLYLRDSDPEVRFAALEAGLLA----GSR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLR 246 (410)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHc----CCH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHH
Confidence 66667777777777777766544 221 1123334333445544544444443332 22 24566666
Q ss_pred hhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 482 ~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
.++.+++ +|..++.++|.+.. ...++.++..+.|+. +|..+-+++..|..
T Consensus 247 ~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 247 ELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 6666655 77788888877765 556777777776644 77777777777753
No 66
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=5.8e-06 Score=86.07 Aligned_cols=226 Identities=12% Similarity=0.170 Sum_probs=163.6
Q ss_pred ccCCcHHHHHHHHHHHHccccccch----hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHH
Q 007842 328 SSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPA 401 (587)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~ 401 (587)
-+..+..+|.-+...|..+...-.. +.....+...+..-+++.....+...+.++..+.+..+.+ .+....+|.
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444778999999998888766221 2234455666666677777889999999999999888744 233445555
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHH--Hh---hChhh---hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---H
Q 007842 402 IVELAEDRHWRVRLAIIEYIPLLA--SQ---LGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---E 470 (587)
Q Consensus 402 l~~~~~~~~~~vR~~~~~~l~~l~--~~---~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~ 470 (587)
+.-..++.+-.-|..+..+|..+. .. .|.+. ..+.+++.+...+......++...+-++..+...++. +
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 544557888888888888777776 22 24332 3345666666666666666666657777777665433 3
Q ss_pred HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 471 ~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
.+...++..+.-.+...+..++.+|+.++..+...++..- +.+.++|.+..+++|....+|..+-..+..++..+|.
T Consensus 823 ~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 3456667777777888999999999999999998887643 4677899999999999999999999999999999988
Q ss_pred HHHHhh
Q 007842 548 SMVEKT 553 (587)
Q Consensus 548 ~~~~~~ 553 (587)
+.....
T Consensus 903 ~eLe~~ 908 (1176)
T KOG1248|consen 903 EELESF 908 (1176)
T ss_pred HHHHhh
Confidence 765433
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.3e-07 Score=89.64 Aligned_cols=324 Identities=15% Similarity=0.179 Sum_probs=204.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhh--hhhhhhh---------------hccCCcHHHHHHHHHH---
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRK--ELIPFLS---------------ENNDDDDEVLLAMAEE--- 70 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~--~l~p~l~---------------~~~~~~~~v~~~~~~~--- 70 (587)
+++..+.++++|......|+..+..+.. +|-+..|. .++.++. +++.++.++...+...
T Consensus 38 l~e~r~E~k~~d~~~k~~a~~kl~yl~m-lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rk 116 (877)
T KOG1059|consen 38 LEEIRQELKSDDLNVKSNAVLKLTYLEM-LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRK 116 (877)
T ss_pred HHHHHHHhhchhhhhhHHHHHHHHHHHH-HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHH
Confidence 5667778888888888888887776543 36554443 1122221 2333333333222222
Q ss_pred -------------hccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC
Q 007842 71 -------------LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE 137 (587)
Q Consensus 71 -------------l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~ 137 (587)
|+-+..+ +.++.+..+.+-+..++.+..|.+|+.|+-.+..++...+.. ++ --.|-+.+-.+|+
T Consensus 117 dl~S~n~ye~giAL~GLS~f-vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-lr-~~FprL~EkLeDp 193 (877)
T KOG1059|consen 117 DLNSSNVYEVGLALSGLSCI-VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-LR-PCFPRLVEKLEDP 193 (877)
T ss_pred HhccCccchhhheecccccc-cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-Hh-hhHHHHHHhccCC
Confidence 2222222 235567778888889999999999999999999999887653 23 3456666677888
Q ss_pred CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHh-cCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCch
Q 007842 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD 216 (587)
Q Consensus 138 ~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~ 216 (587)
+..+..+|++.++.++.+.+..+.. +-|.|..+ ..+.+-++-...+..++.+... ++.....+++.+..++.....
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~-LAP~ffkllttSsNNWmLIKiiKLF~aLtpl--EPRLgKKLieplt~li~sT~A 270 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQ-LAPLFYKLLVTSSNNWVLIKLLKLFAALTPL--EPRLGKKLIEPITELMESTVA 270 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCccccc-ccHHHHHHHhccCCCeehHHHHHHHhhcccc--CchhhhhhhhHHHHHHHhhHH
Confidence 8999999999999999887665543 44555554 4455666666666777766554 345566677777666655432
Q ss_pred -hHHHHHHHHHHH--HhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 007842 217 -SVRLLAVEGCAA--LGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 292 (587)
Q Consensus 217 -~vr~~a~~~l~~--l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~ 292 (587)
++-..++.++.+ +....++ ......++.-+.-++.|+++..|..++-+++.+++.-+.. ......++++++.|.
T Consensus 271 mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~Dk 348 (877)
T KOG1059|consen 271 MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDK 348 (877)
T ss_pred HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccC
Confidence 233333333322 2222222 2335567788888999999999999999999998753321 123566789999999
Q ss_pred hHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccc
Q 007842 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMA 347 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~ 347 (587)
++.+|..|+..+..+... +. ...|+..+.....+.+. ..|...+..+..++
T Consensus 349 D~SIRlrALdLl~gmVsk---kN-l~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 349 DESIRLRALDLLYGMVSK---KN-LMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred CchhHHHHHHHHHHHhhh---hh-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 999999999888776542 21 23444444444333333 55555555444444
No 68
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.1e-05 Score=80.51 Aligned_cols=376 Identities=13% Similarity=0.089 Sum_probs=212.6
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC---
Q 007842 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--- 234 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--- 234 (587)
++-+..+...+...+-.....+|.....++..+...- .+..++.+++....+++.++...-..|+-++..+.+...
T Consensus 84 e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D-~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~ 162 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQVPELIRVQLTACLNTIIKAD-YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKK 162 (1010)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcc
Confidence 4455555555555444445778888777777776653 246678899999999999988888889888888887643
Q ss_pred h------h----hhhhchHHHHHHhccCCcHHH---HHHHHHHHHHHHH-HhCCCcccc----chHHHHHHhcC------
Q 007842 235 P------Q----DCVAHILPVIVNFSQDKSWRV---RYMVANQLYELCE-AVGPEPTRM----DLVPAYVRLLR------ 290 (587)
Q Consensus 235 ~------~----~~~~~l~~~l~~~~~d~~~~v---R~~a~~~l~~~~~-~~~~~~~~~----~l~~~l~~~l~------ 290 (587)
. . ...+.+......++.+++... .+..++.+-..+. .++...... .-+..+...++
T Consensus 163 ~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E 242 (1010)
T KOG1991|consen 163 DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE 242 (1010)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh
Confidence 1 1 123334444455566665443 3333333333332 122221111 12222222221
Q ss_pred -----------CChHHHHHHHHHhHHHHHhhhCHH------------HHHH----hHhHHHHHhcc---C---CcHHHHH
Q 007842 291 -----------DNEAEVRIAAAGKVTKFCRILNPE------------LAIQ----HILPCVKELSS---D---SSQHVRS 337 (587)
Q Consensus 291 -----------d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~----~i~~~l~~~~~---d---~~~~vr~ 337 (587)
++-|.+++-|+..+.++.+..|.. .+.. .++..+.+.+. . -.++|-.
T Consensus 243 ~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~ 322 (1010)
T KOG1991|consen 243 VLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLY 322 (1010)
T ss_pred cccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 123567888999999998877631 1111 22222222221 1 2345555
Q ss_pred HHHHHHHcccccc------chh---HHHHhHHHHHHHh------h-cCCChHHHH-------------HHHHhhhhhhhh
Q 007842 338 ALASVIMGMAPLL------GKD---ATIEQLLPIFLSL------L-KDEFPDVRL-------------NIISKLDQVNQV 388 (587)
Q Consensus 338 ~a~~~l~~l~~~~------~~~---~~~~~l~~~l~~~------l-~d~~~~vr~-------------~a~~~l~~l~~~ 388 (587)
-+...+.+....- ++. .+.+.++|.+.-- . .|+.+.+|. ++...+..++..
T Consensus 323 ~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K 402 (1010)
T KOG1991|consen 323 YLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK 402 (1010)
T ss_pred HHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh
Confidence 5555544433211 110 1122333433210 0 122334444 455666666666
Q ss_pred hchhhHHhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHhhCh-----hhhHHHHHHHHHHhcCCCchHHHHH
Q 007842 389 IGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDA 455 (587)
Q Consensus 389 ~~~~~~~~~~l~~l~~~~~--------~~~~~vR~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~ 455 (587)
=|++.+ +.+++.+.+.++ ..+++-+..++..++.++..+.+ +.+...+.+.++..++++.--.|..
T Consensus 403 R~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrar 481 (1010)
T KOG1991|consen 403 RGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRAR 481 (1010)
T ss_pred cchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHH
Confidence 555544 445555555443 24678888999999999876632 2233446666777789999999999
Q ss_pred HHHHHHHHHH-HhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChH--H---HHhhHHHHHHhhcCCCCh
Q 007842 456 AANNLKRLAE-EFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE--I---TCSRLLPVVINASKDRVP 528 (587)
Q Consensus 456 a~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~--~---~~~~il~~l~~~l~d~~~ 528 (587)
|+..++.++. .+........++......+. |.+..||..|+.++..+....... . +.+.++..++++.++-..
T Consensus 482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En 561 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN 561 (1010)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch
Confidence 9999999984 44444344455555555544 888899999999999998654432 1 234455566666665444
Q ss_pred hHHHHHH
Q 007842 529 NIKFNVA 535 (587)
Q Consensus 529 ~vR~~~~ 535 (587)
..=..++
T Consensus 562 d~Lt~vm 568 (1010)
T KOG1991|consen 562 DDLTNVM 568 (1010)
T ss_pred hHHHHHH
Confidence 4333333
No 69
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-06 Score=86.58 Aligned_cols=331 Identities=15% Similarity=0.147 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHH-hhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
++....++|.+.++++++++-||+.|.-++..+.+.. +...+..-.++.. +..+.++..++.|.-.|.. ..++
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~----~D~E 202 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFT----TDPE 202 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCChHHHHHHHHHhccCchhHHHHHHHHHh----cCHH
Confidence 4466778899999999999999999999999888774 2222222233333 3456677777777655543 2333
Q ss_pred hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 007842 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 316 (587)
...+++...+.+. .+-+.......++.+...+..-+ ......+..+..++...++.|+..|+.++..+... +..
T Consensus 203 rAl~Yl~~~idqi-~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~a- 276 (948)
T KOG1058|consen 203 RALNYLLSNIDQI-PSFNDSLQLVIVELIRKVCLANP--AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTA- 276 (948)
T ss_pred HHHHHHHhhHhhc-cCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HHH-
Confidence 2333333333222 22234556666677777665221 12345788888888888999998888877666542 221
Q ss_pred HHhHhHHHHHhcc-CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHH
Q 007842 317 IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395 (587)
Q Consensus 317 ~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 395 (587)
.......+..++. .++-.++-....-+..+.. ..+...+.++--++..+...+-+||..++...-.+...-..+++.
T Consensus 277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv 354 (948)
T KOG1058|consen 277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV 354 (948)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence 2222333344332 3344555555555555541 233344555556778888999999999988776666544333322
Q ss_pred hhHHHHHHHH---hcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842 396 QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (587)
Q Consensus 396 ~~~l~~l~~~---~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 472 (587)
..+-..+.+. -.+++...|+..++.++.++-.++ .+...++|.++..+.|.+..--...+..+.+.++.+.. .
T Consensus 355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--L 430 (948)
T KOG1058|consen 355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--L 430 (948)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--H
Confidence 2222222111 134567789999999999876554 34677899999999999988777777777777776553 2
Q ss_pred hhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhccc
Q 007842 473 MQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVM 506 (587)
Q Consensus 473 ~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~ 506 (587)
...++..+.+.+. -....+-..+++.+|..+...
T Consensus 431 r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 431 RASIIEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 3344544444322 223445566777777766543
No 70
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.06 E-value=1.3e-08 Score=92.02 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=128.8
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HH---HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 353 (587)
+...|...-.+.+|+.|..++..+..+.....+. .+ ...+++.+...+.|....|-..++.++..++..++..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 4444434446677888888888888877654111 11 1233456667777888888899999999998887753
Q ss_pred --HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc-hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC-
Q 007842 354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG- 429 (587)
Q Consensus 354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~- 429 (587)
.+.+.++|.+++.+.+....++..+..+|..++...+ .. ..+.+.+....+++++.+|..++..+..+....+
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 3577899999999999999999999999999998876 22 2236777788899999999999999999988777
Q ss_pred -hhh-----hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842 430 -VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 430 -~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
... ..+.+.+.+...+.|.+++||.+|-.++..+.+.+|..
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 121 23568899999999999999999999999999887764
No 71
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.2e-06 Score=84.95 Aligned_cols=456 Identities=13% Similarity=0.083 Sum_probs=246.4
Q ss_pred CCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC
Q 007842 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE 137 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~ 137 (587)
..+...|+...-.++.+... . +-.-.....+.+-.+..++..|-.|+++|..+...---.. +-.++.+..-+.
T Consensus 75 skd~~LRr~vYl~Ikels~i-s--edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~----iery~kqaivd~ 147 (865)
T KOG1078|consen 75 SKDVSLRRMVYLAIKELSKI-S--EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQA----IERYMKQAIVDK 147 (865)
T ss_pred hcCHHHHHHHHHHHhhcccc-c--hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHH----HHHHHHhHeecc
Confidence 34556677766666666432 1 1111223334444556677788888888877754322122 222333333344
Q ss_pred CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchh
Q 007842 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217 (587)
Q Consensus 138 ~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~ 217 (587)
...+..++...-.++.+ .+.+..+...........+.+..++..+...+..+-+.- ......++..+... .-.++-
T Consensus 148 ~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~d--rla~sklv~~~~~~-~~~~~~ 223 (865)
T KOG1078|consen 148 NPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKND--RLAVSKLVQKFTRG-SLKSPL 223 (865)
T ss_pred ccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHccc-cccchh
Confidence 44444333322112222 234444555555566666666677777666666664431 11222222222220 001111
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHH
Q 007842 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVR 297 (587)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 297 (587)
-+...+.....+.... ......+.+++..++.++...|-..+++++..+....+.+..+ -+..+..+++.+...+|
T Consensus 224 A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lR 299 (865)
T KOG1078|consen 224 AVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALR 299 (865)
T ss_pred HHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHH
Confidence 1111111111111111 1234567888889999999999999999988776554444333 56667778899999999
Q ss_pred HHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHH
Q 007842 298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 377 (587)
Q Consensus 298 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (587)
.+|++.|..++-..+.... .--.-+..++.|.+-.+-.-++..+-+.+.....+.... -++.+..-+.|+..-|-..
T Consensus 300 faAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~-qI~~fv~disDeFKivvvd 376 (865)
T KOG1078|consen 300 FAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMK-QISSFVSDISDEFKIVVVD 376 (865)
T ss_pred HHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccccceEEeHH
Confidence 9999999999987665421 112345677788887777777766655543332222222 2233344445555545444
Q ss_pred HHHhhhhhhhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHH
Q 007842 378 IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA 456 (587)
Q Consensus 378 a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 456 (587)
++.+ ++..+..+. ..+++.+..++. +.....+.+.++++..+....... ++..+..+-..+.|... +.-+
T Consensus 377 ai~s---Lc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~--~~i~ 447 (865)
T KOG1078|consen 377 AIRS---LCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEF--TQIA 447 (865)
T ss_pred HHHH---HHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccc--hHHH
Confidence 4444 444444332 355666666554 445677777777777766543211 22223333334444332 1222
Q ss_pred HHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHH
Q 007842 457 ANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK 536 (587)
Q Consensus 457 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~ 536 (587)
...|+.+.+.......-...+-.+....-=.+..+|.+|+.++.+++ .+.+...+.+...+.+++.|.+.+||..|-.
T Consensus 448 ~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 448 VRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred HHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHH
Confidence 22333332211100000112222222222236789999999999998 3444456778888899999999999999999
Q ss_pred HHHHhh
Q 007842 537 VLQSLI 542 (587)
Q Consensus 537 ~l~~l~ 542 (587)
++..+-
T Consensus 526 ~l~~l~ 531 (865)
T KOG1078|consen 526 YLKNLE 531 (865)
T ss_pred HHHHhh
Confidence 888776
No 72
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.05 E-value=7.8e-06 Score=83.08 Aligned_cols=496 Identities=15% Similarity=0.118 Sum_probs=243.3
Q ss_pred hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhc
Q 007842 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT 96 (587)
Q Consensus 18 l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 96 (587)
+.|.+..+|..|++.+-.. +..|.+ ...+.|-+.. ....+.|+.+.+---+..+++.- ++..-..++.+.+=++
T Consensus 28 l~s~n~~~kidAmK~iIa~-M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~~~lLavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQ-MSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK--PELALLAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHH-HhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhcc
Confidence 5666777777777766432 234444 3345554433 33455566666655555554421 2322333455666667
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCC
Q 007842 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDM 176 (587)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~ 176 (587)
|+|+.+|-.|++.++.+-. ++....+++.+.++++|++
T Consensus 103 d~N~~iR~~AlR~ls~l~~------------------------------------------~el~~~~~~~ik~~l~d~~ 140 (757)
T COG5096 103 DPNEEIRGFALRTLSLLRV------------------------------------------KELLGNIIDPIKKLLTDPH 140 (757)
T ss_pred CCCHHHHHHHHHHHHhcCh------------------------------------------HHHHHHHHHHHHHHccCCc
Confidence 7777777777776666521 2244566778888999999
Q ss_pred hHHHHHHHHhHHHHHHhhccchhhhH-HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccC--C
Q 007842 177 PMVRRSAASNLGKFAATVEPAHLKTD-IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD--K 253 (587)
Q Consensus 177 ~~vr~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d--~ 253 (587)
+.||+.|+-++..+...- ++.+.+. ...++..+..|.+|.|...|..++..+-+... ..+..+....+.+= .
T Consensus 141 ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a----~~~~~~~~~~i~~l~~~ 215 (757)
T COG5096 141 AYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELA----HGYSLEVILRIPQLDLL 215 (757)
T ss_pred HHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhh----hhHHHHHHHHhhhccch
Confidence 999999999999988653 2334444 66777888899999999888888877765411 12222222222110 1
Q ss_pred cHHH--HHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccC
Q 007842 254 SWRV--RYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 330 (587)
Q Consensus 254 ~~~v--R~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d 330 (587)
+|.+ ...-...+..+....+.... ...+.....-..+..++.+-..++..+..+........+.....|.+..++..
T Consensus 216 ~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~ 295 (757)
T COG5096 216 SLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAK 295 (757)
T ss_pred hhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcC
Confidence 2221 22222333333333332211 11222222222345667777778887777776665554545556666666655
Q ss_pred CcHHHHHHHHHHHH-ccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC-
Q 007842 331 SSQHVRSALASVIM-GMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED- 408 (587)
Q Consensus 331 ~~~~vr~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~- 408 (587)
+ +......+.... .+.+...+ ..+....++.....++ ..+...-...+..+. ..+.. ..+++.+...+.+
T Consensus 296 ~-~~~~~~vl~~~~~~~l~~~~k--~~~~~~~~f~~~~~~~-i~~~lek~~~~t~l~---~~~n~-~~~L~e~~~y~~~~ 367 (757)
T COG5096 296 P-ESLIQYVLRRNIQIDLEVCSK--LLDKVKKLFLIEYNDD-IYIKLEKLDQLTRLA---DDQNL-SQILLELIYYIAEN 367 (757)
T ss_pred C-HHHHHHHHHHhhHHHHHhhHH--HHHHHhhhhhhhccch-HHHHHHHHHHHhhcC---Cchhh-HHHHHHHHHHHhhc
Confidence 4 222222222211 11111111 1111111111111111 111111111111111 01111 2245555555555
Q ss_pred -CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC---CCchHHHHHH-----HHHHH---HHHHHhChHHHhhhh
Q 007842 409 -RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ---DKVYSIRDAA-----ANNLK---RLAEEFGPEWAMQHI 476 (587)
Q Consensus 409 -~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a-----~~~l~---~l~~~~~~~~~~~~l 476 (587)
.+..+-..++++|+.++... +.....++..++.++. -..+-+-..+ +..+. .....+..+ ..+.+
T Consensus 368 ~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~-~~~~~ 444 (757)
T COG5096 368 HIDAEMVSEAIKALGDLASKA--ESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNE-YPKIL 444 (757)
T ss_pred cccHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCc-chhhh
Confidence 66666666777777776543 1223334444555544 1111111111 11110 111112111 01122
Q ss_pred HHHH---Hhhcc--CCchhHHHHH-----HHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 477 TPQV---LEMIN--NPHYLYRMTI-----LRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 477 ~~~l---~~~l~--d~~~~~R~~a-----~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
.+.+ .+.+. +..+..+.+. ++.+|.++..+..- .+..+-......-+....++......-..+.-...
T Consensus 445 ~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~--~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 445 LRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRL--EPELLRIAISNFVDETLEVQYTILMSSVKLIANSI 522 (757)
T ss_pred HHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhh--hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence 2222 22233 3346666666 88888887754432 23455566666778888999888877777654433
Q ss_pred hHHHH---hhHHHHHHHh-cCCCCccHHHHHHHHHHH
Q 007842 547 QSMVE---KTIRPCLVEL-TEDPDVDVRFFATQAIQS 579 (587)
Q Consensus 547 ~~~~~---~~i~~~l~~l-~~d~d~~Vr~~a~~al~~ 579 (587)
..... +...+.+... ..-.++|+|..|. .+.+
T Consensus 523 ~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra~-my~~ 558 (757)
T COG5096 523 RKAKQCNSELDQDVLRRCFDYVLVPDLRDRAR-MYSR 558 (757)
T ss_pred HhhhhccchhccHHHHHHHhccCChhHHHHHH-HHHH
Confidence 22221 2222333332 2334568888877 4443
No 73
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.05 E-value=5.3e-09 Score=102.34 Aligned_cols=255 Identities=13% Similarity=0.198 Sum_probs=207.3
Q ss_pred cCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc
Q 007842 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 368 (587)
Q Consensus 289 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (587)
+.=.+.+-|..-...|......++.+.....++|.+...+.-.+ --..+...+-.++..+..+.+...++|.+.++++
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 44455666777777787777777888888888998887654333 1111122223344445555677889999999999
Q ss_pred CCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 448 (587)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 448 (587)
..+..+|...++.+..++..+..+.+.+.++|.+...+.|.+..+|...+..+..++..++.......++..+-..-.|.
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence 99999999999999999999999998899999999999999999999999999999999988877778888888888899
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCCh
Q 007842 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 528 (587)
Q Consensus 449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~ 528 (587)
...+|.....+++++............+.......+.|+-..-|.+++..+....+.+........++|.+..+.-|++.
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~ 500 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK 500 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence 99999999999999987665443223334444556889988999999999999999999988999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhh
Q 007842 529 NIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 529 ~vR~~~~~~l~~l~~~~ 545 (587)
.||..+.+++.......
T Consensus 501 ~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 501 TVRDTAEKAIRQFLEKL 517 (690)
T ss_pred chhhHHHHHHHHHHhhh
Confidence 99999999998876654
No 74
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.4e-05 Score=78.42 Aligned_cols=281 Identities=14% Similarity=0.182 Sum_probs=172.6
Q ss_pred cHHHHHHHH-HHhccccccCCCcchHhhhHHHHhhhhc--chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC
Q 007842 60 DDEVLLAMA-EELGVFIPYVGGVEHAHVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG 136 (587)
Q Consensus 60 ~~~v~~~~~-~~l~~l~~~~~~~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~ 136 (587)
.++....+| .+++++ |+.+....+.+-+.+++. +..+.||+.|+-++-.+.+..++-.-...+..-+..+.+|
T Consensus 123 rn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D 198 (938)
T KOG1077|consen 123 RNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDD 198 (938)
T ss_pred CCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCc
Confidence 344444443 344555 666666666666666654 4567899999999999988855433344677777788888
Q ss_pred CCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhc-------CC---------CChHHHHHHHHhHHHHHHhhccchhh
Q 007842 137 EWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC-------QD---------DMPMVRRSAASNLGKFAATVEPAHLK 200 (587)
Q Consensus 137 ~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~-------~d---------~~~~vr~~~~~~l~~l~~~~~~~~~~ 200 (587)
.+..+-.++..++..+.++.+++++.-+.+.+..+. .+ +.|+....++..|..+ ....++...
T Consensus 199 ~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r 277 (938)
T KOG1077|consen 199 QHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTR 277 (938)
T ss_pred cccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHH
Confidence 888888888899988998888776554444333321 11 4677777777766655 221122333
Q ss_pred hHHHHHHHHhhhCCc-----hhH-----HHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 007842 201 TDIMSIFEDLTQDDQ-----DSV-----RLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 201 ~~l~~~l~~l~~d~~-----~~v-----r~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~ 269 (587)
..+...+...++-.+ ..| ..+.+.-.-.++-++.+ ..........+-+++++.+..+|..+.+.+..++
T Consensus 278 ~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ 357 (938)
T KOG1077|consen 278 ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLA 357 (938)
T ss_pred HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Confidence 444444444432111 112 22222222333434443 3345667777888889999999999999988888
Q ss_pred HHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 007842 270 EAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (587)
Q Consensus 270 ~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
..-........-...++..++ +.+..+|+.++..|..++..-..+.+..+ +.+.+...++.+|+..+--..-+++
T Consensus 358 ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~e----lLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 358 SSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAE----LLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred hccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHH----HHHHHhhcchHHHHHHHHHHHHHHH
Confidence 651111111223566677777 88999999999999999876544444344 4444444666677665544444444
Q ss_pred c
Q 007842 349 L 349 (587)
Q Consensus 349 ~ 349 (587)
.
T Consensus 434 K 434 (938)
T KOG1077|consen 434 K 434 (938)
T ss_pred H
Confidence 3
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.97 E-value=7.2e-06 Score=80.93 Aligned_cols=305 Identities=16% Similarity=0.166 Sum_probs=189.7
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCc--------cccchHHHHHHhcC-----CC--hHHHHHHHHHhHHHHHhhhCHHHH--
Q 007842 254 SWRVRYMVANQLYELCEAVGPEP--------TRMDLVPAYVRLLR-----DN--EAEVRIAAAGKVTKFCRILNPELA-- 316 (587)
Q Consensus 254 ~~~vR~~a~~~l~~~~~~~~~~~--------~~~~l~~~l~~~l~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~-- 316 (587)
+...-...++++..+........ ....++|.+.+..- +. ++.+-..+...+..+...++.+..
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566667777777766543322 01126666665542 22 256666666777777777776543
Q ss_pred -HHhHhHHHHH-----hcc-CCc------HHHHHHHHHHHHccccccchhHHHHhHHHHHHHh-hcCCChHHHHHHHHhh
Q 007842 317 -IQHILPCVKE-----LSS-DSS------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKL 382 (587)
Q Consensus 317 -~~~i~~~l~~-----~~~-d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l 382 (587)
...+...+.. -+. +.+ .+.-.-....+..+-....-. ....++..+..+ ....++..|..+++.+
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 2333333320 000 111 111112223333333222111 122344444444 3444589999999999
Q ss_pred hhhhhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhh--ChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 383 DQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 383 ~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
+.+......+...+.++..+.... .......|..+++.+..+.+.+ ........+...+..++.| +.+...+++.
T Consensus 215 a~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~ 292 (415)
T PF12460_consen 215 ASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKA 292 (415)
T ss_pred HHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHH
Confidence 999988765544455555555444 4556667777788887777764 2222344567778888887 7788889999
Q ss_pred HHHHHHHhCh----H-----------HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH---HhhHHHHHHh
Q 007842 460 LKRLAEEFGP----E-----------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVIN 521 (587)
Q Consensus 460 l~~l~~~~~~----~-----------~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~---~~~il~~l~~ 521 (587)
++.+...... + .+-..++|.+.+..++.+...|...+.++..+.+.++.+.+ .+.++|.+++
T Consensus 293 f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlq 372 (415)
T PF12460_consen 293 FGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQ 372 (415)
T ss_pred HhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 9888764211 1 13356788888888887777999999999999999887654 5779999999
Q ss_pred hcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHh
Q 007842 522 ASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVEL 561 (587)
Q Consensus 522 ~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l 561 (587)
.++-+++.+|..++.++..+....+.- .+.+.++|.|.++
T Consensus 373 sL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 373 SLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998765221 3445666666543
No 76
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.96 E-value=8.5e-08 Score=98.72 Aligned_cols=357 Identities=17% Similarity=0.184 Sum_probs=228.2
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc-ccchH
Q 007842 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLV 282 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~~l~ 282 (587)
++.....+.......|....+++..+.... ........+..+..-..+..-..++..+..++..+|.... ...++
T Consensus 65 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~----~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~ 140 (815)
T KOG1820|consen 65 LSFGLKCLDSKRVNIRDTKTQSLLRIGKLE----DIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI 140 (815)
T ss_pred ccchhhhcccccccccCcchhHHHHHHHhh----hhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 334444444444555555555555552211 1234455555566666677667777777777777765332 23344
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHH
Q 007842 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLL 360 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~ 360 (587)
+.+-.+. +..||..+...+..+.+..|.... +.+. +.......+.+....|+.. +...--
T Consensus 141 ~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~-----~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (815)
T KOG1820|consen 141 KHVGSLA---DKNVRSEASKLLVEIYRWTGDASK-----PLLF----------KASAPGLMGKLGSYQGKSMMSFFNEKR 202 (815)
T ss_pred ccCcccc---ccccchhhcccchhhhhhcCCCcC-----cccc----------hhhhHHHHHHHHhhccccccccccccc
Confidence 4444444 678999999999999887776421 1111 3333333333333333211 000111
Q ss_pred HHHHHhhcC------------CChHHHHHHHHhhh--hhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007842 361 PIFLSLLKD------------EFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 361 ~~l~~~l~d------------~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~ 426 (587)
|.......+ ....++...-..-. .-...+........+-+.+..-+.+++|..|..+++.+.....
T Consensus 203 ~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~ 282 (815)
T KOG1820|consen 203 PLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILE 282 (815)
T ss_pred cccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHh
Confidence 111111111 11111111000000 0001112233445666777778899999999999888777665
Q ss_pred hhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhHHHHHHHHHHH
Q 007842 427 QLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISL 501 (587)
Q Consensus 427 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~ 501 (587)
.-+ ...+...+...+-..+.|.+..|-..|+..+..++..++..+ +...++|.+++.+.+....+|.++..++..
T Consensus 283 e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~ 362 (815)
T KOG1820|consen 283 EAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDA 362 (815)
T ss_pred ccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHH
Confidence 443 122334445555566789999999999999999999887764 567788999999999999999999999999
Q ss_pred hhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch----HHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007842 502 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SMVEKTIRPCLVELTEDPDVDVRFFATQAI 577 (587)
Q Consensus 502 l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al 577 (587)
++...+ ...+.+.+..+++++++.+|..+...+......+++ ..-...+.|.+....+|.+.+||.+|..++
T Consensus 363 ~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 363 ILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred HHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 888544 367788999999999999999999999998887773 234567889999999999999999999999
Q ss_pred HHHHHhhcc
Q 007842 578 QSIDHVMMS 586 (587)
Q Consensus 578 ~~l~~~~~~ 586 (587)
+.+.+..|.
T Consensus 439 ~~v~k~~Ge 447 (815)
T KOG1820|consen 439 AAVMKVHGE 447 (815)
T ss_pred HHHHHHhhH
Confidence 999998874
No 77
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=7.4e-05 Score=74.98 Aligned_cols=508 Identities=16% Similarity=0.140 Sum_probs=269.5
Q ss_pred cHHHHHHHhhcHHHHHH-hhChHhhh-------------hhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842 22 DIQLRLNSIRRLSTIAR-ALGEERTR-------------KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (587)
Q Consensus 22 ~~~~R~~a~~~l~~~~~-~~~~~~~~-------------~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l 87 (587)
|...|.+|+-+++...+ .++++.-. ..+++.+ +.....++..+.+++.-+++. .=++-++.+
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lM---l~s~~~iQ~qlseal~~Ig~~-DFP~kWptL 127 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLM---LSSPFNIQKQLSEALSLIGKR-DFPDKWPTL 127 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHhcc-ccchhhHHH
Confidence 79999999999997765 44433221 1222222 234457778888887766542 114678899
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh----hHHhhHH--------HH---H---HHHhc--CCC-------Cc
Q 007842 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRES----DLVDWYI--------PL---V---KRLAA--GEW-------FT 140 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~--------~~---l---~~l~~--~~~-------~~ 140 (587)
+|.+..-++..|..+-.+.+..-..+.+...++ .++.++. |+ + .+++. +.+ +.
T Consensus 128 l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~ 207 (960)
T KOG1992|consen 128 LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFG 207 (960)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 999988888888888777777777777766432 2222211 21 1 12221 111 22
Q ss_pred chhhHHhhhHh-hcCCCCh---HHHHHHHHHHHHhcCCCCh-------------HHHHHHHHhHHHHHHhhccc--hhhh
Q 007842 141 ARVSACGLFHI-AYPSAPD---ILKTELRSIYTQLCQDDMP-------------MVRRSAASNLGKFAATVEPA--HLKT 201 (587)
Q Consensus 141 ~r~~a~~~l~~-~~~~~~~---~~~~~l~~~l~~l~~d~~~-------------~vr~~~~~~l~~l~~~~~~~--~~~~ 201 (587)
+....++++.. .+..+++ +..+..++.+.+++.-++| .+|..+|+.+.-.+...+++ .+.+
T Consensus 208 vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~ 287 (960)
T KOG1992|consen 208 VLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLP 287 (960)
T ss_pred HHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Confidence 22223333322 2334443 3556777777777663322 45667777777777665331 2333
Q ss_pred HHHHHHHHhhh----CC-chhHHHHHHHHHHHHhhhcChhh--hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC
Q 007842 202 DIMSIFEDLTQ----DD-QDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274 (587)
Q Consensus 202 ~l~~~l~~l~~----d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~ 274 (587)
.++.....++. |. ++.....|.+.|..+++.-.... ..+.++..+.+..-=++...|..- .
T Consensus 288 ~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eD------------e 355 (960)
T KOG1992|consen 288 DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREED------------E 355 (960)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhh------------H
Confidence 44433334443 33 33445556666666654322110 011111111111111122222211 1
Q ss_pred CccccchHHHHHHhcCCChHH-HHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhccC--CcHHHHHHHHHHHHcccc
Q 007842 275 EPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAP 348 (587)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~l~~ 348 (587)
+...++-+.++.+-++-.|.+ =|.+|+..+..+++.+... .+...+-..+.+...+ .+|.-+..++..+..++.
T Consensus 356 ElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 356 ELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred HHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 233455777777777766544 4677888888888877432 1222222333334444 468888888777776654
Q ss_pred ccc---------------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHH
Q 007842 349 LLG---------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413 (587)
Q Consensus 349 ~~~---------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~v 413 (587)
..+ .+.+...++|.+.+--..+.+-++..+++-+..+-..++++.. -.++|.+..+++.+..-+
T Consensus 436 k~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vv 514 (960)
T KOG1992|consen 436 KGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVV 514 (960)
T ss_pred hcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHH
Confidence 321 1234455566555433345677888888888888888887766 457888888998888888
Q ss_pred HHHHHHHHHHHHHhh--------ChhhhHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHH-
Q 007842 414 RLAIIEYIPLLASQL--------GVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQ- 479 (587)
Q Consensus 414 R~~~~~~l~~l~~~~--------~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~- 479 (587)
-.-++.+++.+...- +++...+.+.+.+.+++ +-+...--+...+++-.+........ +.+.+++.
T Consensus 515 hsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~L 594 (960)
T KOG1992|consen 515 HSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQL 594 (960)
T ss_pred HHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHH
Confidence 877788887765432 33333444444444444 22211112222233333322211110 12233333
Q ss_pred ---HHhhccCC-chhHHHHHHHHHHHhhcccCh------HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 480 ---VLEMINNP-HYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 480 ---l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
+.+..++| +++.-.-..++++-+....+. ..+...++|.+...+.....+.---+.+.++.+.+..+
T Consensus 595 teiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 595 TEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444555 344444445555555442222 11446677777777766666666666677776665543
No 78
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.94 E-value=3.1e-05 Score=78.86 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhc
Q 007842 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (587)
..+++=+.......+.++|+-+-..+..+++.-+ ..--...+.+.+=++|+++.+|..|++.++.+- .......
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~----~~el~~~ 127 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR----VKELLGN 127 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC----hHHHHHH
Confidence 3344433333336678888887777777776643 222234556666677888888888888887643 3446777
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007842 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
+++.++++++|+++.||+.|+-++.++-.. +++..+.. ....+..++.|.++.|-..|+.++..+-..
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 888888889999999999998888877653 33444444 677777788888888888888888776543
No 79
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.89 E-value=0.00013 Score=74.18 Aligned_cols=564 Identities=13% Similarity=0.070 Sum_probs=294.9
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCC---------
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG--------- 80 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~--------- 80 (587)
.+..++....|.|..+|..|...+..+... +.....+.....+. +.+=..|+.+.-.|.+++.....
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~---~~f~~aL~~va~~~-~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLELT---EGFGVALAEVAANK-DASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhccccc---hHHHHHHHHHHhCc-ccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 467889999999999999999888765432 22222222222221 11224444444333333321111
Q ss_pred ----cchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCC
Q 007842 81 ----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (587)
Q Consensus 81 ----~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~ 156 (587)
.+....+-..+.+++-+++..+|.++..++..++...-|+. +.+++|++..+..+.+...-..|+..+..++..+
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~-WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDE-WPELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchh-hHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 11222344455566668999999999999999998877765 7788999888887655555556666666665544
Q ss_pred ChHHHHHH-------HHHHHHhcCCCChHHHHHHH--HhHHHHHHhhcc---------chhhhHHHHHHHHhh------h
Q 007842 157 PDILKTEL-------RSIYTQLCQDDMPMVRRSAA--SNLGKFAATVEP---------AHLKTDIMSIFEDLT------Q 212 (587)
Q Consensus 157 ~~~~~~~l-------~~~l~~l~~d~~~~vr~~~~--~~l~~l~~~~~~---------~~~~~~l~~~l~~l~------~ 212 (587)
..+....+ +-.+..+....+...|..++ ..+......+.. ..+...+++.+..+. +
T Consensus 160 ~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~ 239 (1005)
T KOG2274|consen 160 DVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRN 239 (1005)
T ss_pred HHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 32111111 11122333444444444443 222222221111 112233333333332 1
Q ss_pred CC-chhHHHHHHHHHHHHhhhcChh--hhhhchHHH----HHHhc------------------cCCcHH---HHHHHHH-
Q 007842 213 DD-QDSVRLLAVEGCAALGKLLEPQ--DCVAHILPV----IVNFS------------------QDKSWR---VRYMVAN- 263 (587)
Q Consensus 213 d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~----l~~~~------------------~d~~~~---vR~~a~~- 263 (587)
+. +...|...++.+..+.+.++.. ......++. +.+.. .|.++. +-....+
T Consensus 240 ~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i 319 (1005)
T KOG2274|consen 240 DGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQI 319 (1005)
T ss_pred ccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhH
Confidence 22 3355666777777777766641 111111111 11110 111111 1111122
Q ss_pred --HHHHHHHHhC--CCc--cccchHHHHHHh------------------cCCCh--HHHHHHHHHhHHHHHhhhCHHHHH
Q 007842 264 --QLYELCEAVG--PEP--TRMDLVPAYVRL------------------LRDNE--AEVRIAAAGKVTKFCRILNPELAI 317 (587)
Q Consensus 264 --~l~~~~~~~~--~~~--~~~~l~~~l~~~------------------l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~ 317 (587)
.+..++.... +.. ...++++.+... ..|++ ..+|..+...+..+...++....
T Consensus 320 ~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i- 398 (1005)
T KOG2274|consen 320 VEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGI- 398 (1005)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhh-
Confidence 1222221110 000 011122222211 11222 34666666666666666655422
Q ss_pred HhHhHH----H-----HHhccCC-cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCChHHHHHHHHhhhhhh
Q 007842 318 QHILPC----V-----KELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 318 ~~i~~~----l-----~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 386 (587)
..+... + ...+..+ .|....+...+...+...-..+.....+...+...+. .+.|..-..+..+++.+.
T Consensus 399 ~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs 478 (1005)
T KOG2274|consen 399 NPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFS 478 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHH
Confidence 111111 1 1123333 3566666666655554221122223333333444333 445666667888888776
Q ss_pred hhhc-hhhHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842 387 QVIG-IDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (587)
Q Consensus 387 ~~~~-~~~~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
.... ...+...++..... +..|..+-+|..++..+...++.---..+.+.++..+.++..+.+.+|-....++|+..+
T Consensus 479 ~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv 558 (1005)
T KOG2274|consen 479 SSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVV 558 (1005)
T ss_pred hhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHh
Confidence 6521 11222233333233 345667778888877776655321122345678888888889999999999999999888
Q ss_pred HHhChHH---HhhhhHHHHHhhc--cCCchhHHHHHHHHHHHhhc---ccChHHHHhhHHHHHHhhcCCCC----hhHHH
Q 007842 465 EEFGPEW---AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRV----PNIKF 532 (587)
Q Consensus 465 ~~~~~~~---~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~----~~vR~ 532 (587)
+. .+++ ....+.|....++ ...++.+-..+-.++..+.+ ..|+ +....+|.+++.++-+. +..-.
T Consensus 559 ~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPslisil~~~~~~~~~~l~~ 635 (1005)
T KOG2274|consen 559 KL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSLISVLQLNADKAPAGLCA 635 (1005)
T ss_pred cc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCcccccCchhhH
Confidence 63 3333 2355666665542 22244666666666666654 3343 45788999999887765 56667
Q ss_pred HHHHHHHHhhhhhchH---HHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 007842 533 NVAKVLQSLIPIVDQS---MVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 533 ~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l-~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.++..|..+..+.+++ .+....+|.+.+. +...|...-.++..+|..+-.
T Consensus 636 ~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 636 IAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 7777777777665543 4557788888884 566677777888888876543
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.4e-05 Score=75.06 Aligned_cols=314 Identities=12% Similarity=0.124 Sum_probs=196.5
Q ss_pred HhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHH
Q 007842 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYV 286 (587)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~--~~l~~~l~ 286 (587)
+-++.++..+|-.....+..+ ...+..+.+.|.+..++++.+..||+.|+-++..+-..+. ...+ ++++..++
T Consensus 106 kDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLIPDAPELIESFL 180 (948)
T ss_pred hhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhcCChHHHHHHHH
Confidence 335667778887776666543 3344677899999999999999999999999988877532 1111 12333332
Q ss_pred HhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc---cCCcHHHHHHHHHHHHccccccchhHHHHhHHHHH
Q 007842 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 363 (587)
..+.++..++.|.-.|... +++.. +.++...+ .+-++..+....+.+...+..-+. .....+..+
T Consensus 181 --~~e~DpsCkRNAFi~L~~~----D~ErA----l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~i 248 (948)
T KOG1058|consen 181 --LTEQDPSCKRNAFLMLFTT----DPERA----LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA--EKARYIRCI 248 (948)
T ss_pred --HhccCchhHHHHHHHHHhc----CHHHH----HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHHH
Confidence 3566677777766555432 33322 33333322 223456666666666666542221 234567778
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHH
Q 007842 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 442 (587)
..+|...++.|+..++.++..+...- .. ....-..+.+++ +.++-+++.....-+..+.. +.+...+.++--++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~p--~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvL 323 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSNDP--TA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVL 323 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCCH--HH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 88888889999988888877765431 11 122222333332 33445555555555555542 22223344555577
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh---ccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHH
Q 007842 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 519 (587)
Q Consensus 443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l 519 (587)
..+..++.+||..++...-.++..-..+....-+-..+.+. -.+.+.+.|+.-++.+..++-.++. +...+.|.+
T Consensus 324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l 401 (948)
T KOG1058|consen 324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL 401 (948)
T ss_pred HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence 88999999999999888777765433332221111222222 1345678999999999999887765 567899999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 520 INASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 520 ~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
++.+.|.++..-..++..+...++.++
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 999999998877777777777777665
No 81
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.3e-05 Score=77.36 Aligned_cols=447 Identities=15% Similarity=0.144 Sum_probs=237.0
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcC-----------CCChHHHHHH
Q 007842 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYP-----------SAPDILKTEL 164 (587)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~-----------~~~~~~~~~l 164 (587)
++||.+|+.|-++|.....+- .+.+.++.-+.++. +...|.+|...+....+ ...++.++.+
T Consensus 16 ~pdps~rk~aEr~L~~~e~q~------~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~i 89 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQQ------NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQI 89 (960)
T ss_pred CCCCccCchHHHHHHHhccCC------CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHH
Confidence 456677777777766654431 11222222222333 45556555554443332 1223356677
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHH
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (587)
...+..++-+....++....+++..+++.- -+.-++.++|-+..-.+..+..+-.+....-.++-+....+...+.++.
T Consensus 90 kslIv~lMl~s~~~iQ~qlseal~~Ig~~D-FP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~ 168 (960)
T KOG1992|consen 90 KSLIVTLMLSSPFNIQKQLSEALSLIGKRD-FPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWL 168 (960)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhccc-cchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 777778777777889999999988887652 2456677888777777766665555555555555555544332233322
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--CCChHH-------HHHHHHHhHHHHHhhhCHH-
Q 007842 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAE-------VRIAAAGKVTKFCRILNPE- 314 (587)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l--~d~~~~-------vr~~a~~~l~~l~~~~~~~- 314 (587)
-++..+ +.++..+ ..++.....+. .+++.. +....++.+..+.-.--++
T Consensus 169 EIK~vL---------------d~f~~Pl------t~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEF 227 (960)
T KOG1992|consen 169 EIKLVL---------------DRFAEPL------TDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEF 227 (960)
T ss_pred HHHHHH---------------HhhHhHH------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 222221 1111110 00111111111 011111 1111112222211100011
Q ss_pred --HHHHhHhHHHHHhcc--------C-Cc----HHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcCCChH----
Q 007842 315 --LAIQHILPCVKELSS--------D-SS----QHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPD---- 373 (587)
Q Consensus 315 --~~~~~i~~~l~~~~~--------d-~~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~---- 373 (587)
...+.-++.+.+++. | .+ ..+|...|+.+.-.+.....+ .+.+.++.....++.+..++
T Consensus 228 FEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD 307 (960)
T KOG1992|consen 228 FEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYD 307 (960)
T ss_pred HHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHH
Confidence 122334455554443 1 11 367778887776665544332 23455555556666654433
Q ss_pred -HHHHHHHhhhhhhhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCc
Q 007842 374 -VRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKV 449 (587)
Q Consensus 374 -vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~ 449 (587)
....|++.|..+++.-.-.. -.+.++..+.+...=++...|..- .+.|.+.-+..+-+-++ .+.
T Consensus 308 ~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eD------------eElFED~pleYiRRDlEGsDv 375 (960)
T KOG1992|consen 308 YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREED------------EELFEDNPLEYIRRDLEGSDV 375 (960)
T ss_pred HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhh------------HHHhccCHHHHHHHhcccCCc
Confidence 34455556665554211110 012233333333333333333332 22233333444444443 344
Q ss_pred hHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccC---------------hH
Q 007842 450 YSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMG---------------SE 509 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~---------------~~ 509 (587)
..-|.+|+..++.+++.+.... +...+-..+-+..++| ||.-+..++..+..++...+ .+
T Consensus 376 dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~ 455 (960)
T KOG1992|consen 376 DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVD 455 (960)
T ss_pred chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHH
Confidence 5567889999999998874321 1222222233345555 79999999999988875321 14
Q ss_pred HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 510 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
++...++|.+..--....|.+|..+++-+...-.+++++.. -..+|.+...+..+..-|..+|+.+++++-.+-
T Consensus 456 Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 456 FFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 56777888887755566888998888888777666665543 467888899889999999999999999875443
No 82
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.3e-05 Score=75.15 Aligned_cols=450 Identities=13% Similarity=0.130 Sum_probs=220.5
Q ss_pred HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhh-HHhhhHhhcCCCChH-HH
Q 007842 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVS-ACGLFHIAYPSAPDI-LK 161 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~-a~~~l~~~~~~~~~~-~~ 161 (587)
...++.-+.+=+.+.|+.-..-|+.+++.++..--.+.+...+..++. +.+....+|.. |+.++ .++...++- -.
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv--S~~~~~~vkqkaALclL-~L~r~spDl~~~ 185 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV--SGSSMDYVKQKAALCLL-RLFRKSPDLVNP 185 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh--CCcchHHHHHHHHHHHH-HHHhcCccccCh
Confidence 334444455545566777777788888877654333333333332222 11223334444 44444 555444332 23
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--h--
Q 007842 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--D-- 237 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~-- 237 (587)
.+...-+..++.|.+-.|-.++...+..+++..++ .+..-+. .++.-|..++...+.. +
T Consensus 186 ~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~----------------~avs~L~riv~~~~t~~qdYT 248 (938)
T KOG1077|consen 186 GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLP----------------LAVSRLSRIVVVVGTSLQDYT 248 (938)
T ss_pred hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH-HHhhhHH----------------HHHHHHHHHHhhcccchhhce
Confidence 46666777777777766666676777767666532 2211111 1222222222211110 0
Q ss_pred --------hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC-hHHHHHHHHHhHHHHH
Q 007842 238 --------CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFC 308 (587)
Q Consensus 238 --------~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~ 308 (587)
..-.++.++..+-.-.++.+|....+++..+.....+... .++. ....+.+.+.-.-.++
T Consensus 249 yy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~-----------~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 249 YYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPK-----------SKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred eecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCcc-----------ccchHhhhhHHHHHHHHHHHH
Confidence 0111233333333334455666666666555543221110 0111 1223333333333344
Q ss_pred hhhCHH-HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCChHHHHHHHHhhhhhh
Q 007842 309 RILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 309 ~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 386 (587)
-+.+.+ .....-...+.+++.+.+..+|.-+.+.+..++..-.......+-...+...|+ +.+..+|+.++..|..++
T Consensus 318 ~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 318 IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 444433 333455666777788888889999998888887653222222233566666676 778899999999999988
Q ss_pred hhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Q 007842 387 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRL 463 (587)
Q Consensus 387 ~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l 463 (587)
..-..+ .++.-+.+.+..-++.+|+..+--+..+++.+..+. ...+..+++++ +|-.. -+.|-.+
T Consensus 398 D~~Nak----~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy--~WyVdviLqLiriagd~vs------deVW~Rv 465 (938)
T KOG1077|consen 398 DVSNAK----QIVAELLQYLETADYSIREEIVLKVAILAEKYATDY--SWYVDVILQLIRIAGDYVS------DEVWYRV 465 (938)
T ss_pred chhhHH----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhccccc------HHHHHHh
Confidence 764433 344555566666788888887766666666554332 11222222221 22110 0111112
Q ss_pred HHH-hChHHHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHHH
Q 007842 464 AEE-FGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 464 ~~~-~~~~~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l 538 (587)
++. ...+.........+++.+..+ ....-.++...+|.++..+..+ -.....+..+..-+.--++..|...+.+.
T Consensus 466 vQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTy 545 (938)
T KOG1077|consen 466 VQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTY 545 (938)
T ss_pred heeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 211 111112222222333333322 1122233344444444322110 01122334444444445667777777777
Q ss_pred HHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842 539 QSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 578 (587)
Q Consensus 539 ~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~ 578 (587)
..++...++ ....+...+....+-.|.+++.+|.+=|.
T Consensus 546 iKl~nl~PE--i~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 546 IKLINLFPE--IKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred HHHHhhChh--hhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 777666532 33456666666666677888877776554
No 83
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.84 E-value=1.1e-06 Score=90.71 Aligned_cols=329 Identities=12% Similarity=0.107 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch-hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (587)
........+..+..-..+..-.+++..+..++...+.+. ....+++.+-.+. +..||..+...+..+.+..+...
T Consensus 95 ~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~- 170 (815)
T KOG1820|consen 95 DIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA---DKNVRSEASKLLVEIYRWTGDAS- 170 (815)
T ss_pred hhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc---ccccchhhcccchhhhhhcCCCc-
Confidence 345566666667777777777777777777777766543 2233344444443 66789999998888887766531
Q ss_pred hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcC---CChHHHHHHHHHhHHHH------
Q 007842 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLR---DNEAEVRIAAAGKVTKF------ 307 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l------ 307 (587)
...+ .+..+....+.+....|.... ...--+....... ++++.-+...-......
T Consensus 171 ~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~ 236 (815)
T KOG1820|consen 171 KPLL--------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFT 236 (815)
T ss_pred Cccc--------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCC
Confidence 1111 155566666666666553211 1111111111111 22222211111111110
Q ss_pred -----HhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCChHHHHHHH
Q 007842 308 -----CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNII 379 (587)
Q Consensus 308 -----~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (587)
...+.+....+.+-+.+...+.+++|.-|..+++.+....+.-+ ...+...+...+...+.|.|..|...++
T Consensus 237 s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa 316 (815)
T KOG1820|consen 237 SPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAA 316 (815)
T ss_pred CCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHH
Confidence 11223445667788888899999999999999998887765544 1223444555666677899999999999
Q ss_pred Hhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHH
Q 007842 380 SKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 457 (587)
Q Consensus 380 ~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 457 (587)
..+..++..++.. .+...+.|.+.+.+.+....+|..+..++..+++..+ ...+.+.+..++++.++.+|....
T Consensus 317 ~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~ 392 (815)
T KOG1820|consen 317 QILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECL 392 (815)
T ss_pred HHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHH
Confidence 9999999887754 3456778899999999999999999999988887543 345677888889999999999999
Q ss_pred HHHHHHHHHhCh----HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842 458 NNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (587)
Q Consensus 458 ~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~ 510 (587)
..+....+.+++ ....+.+.|.+....+|.+..||.+|..+++.+...+|.+.
T Consensus 393 ~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 393 LLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999988873 12457889999999999999999999999999999998764
No 84
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.8e-05 Score=73.18 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=118.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhh
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH 475 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 475 (587)
+..-|.+.+++.|+++-+|...+-.+..-....|.... +-.++--..+|.+..||.+|+.++|-++-. ...
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnka---ir~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~ 588 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKA---IRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPE 588 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhh---HHHhhcccccccchHHHHHHHHHheeeEec------Chh
Confidence 34567788899999999999876665543333343222 222222337899999999999999987632 134
Q ss_pred hHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHh
Q 007842 476 ITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEK 552 (587)
Q Consensus 476 l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~ 552 (587)
..|..+.++. +-|+.||..+..++|-.+..-|.. ..+..+..+.+|++.-||+.|+-+++-|.-+..+. .-..
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 5666666655 458999999999999999888864 56677777888999999999999999887554333 2234
Q ss_pred hHHHHHHHhcCCCCcc--HHHHHHHHHH
Q 007842 553 TIRPCLVELTEDPDVD--VRFFATQAIQ 578 (587)
Q Consensus 553 ~i~~~l~~l~~d~d~~--Vr~~a~~al~ 578 (587)
.+...+.+...|+-.+ +++.|.-|=+
T Consensus 665 ~frk~l~kvI~dKhEd~~aK~GAilAqG 692 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDGMAKFGAILAQG 692 (929)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 5666666666666544 5665554433
No 85
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.80 E-value=7.4e-07 Score=88.06 Aligned_cols=236 Identities=17% Similarity=0.280 Sum_probs=176.9
Q ss_pred CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc-CC
Q 007842 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 409 (587)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~ 409 (587)
.++.-+....+.|.++...++.......++|.+...+.+. ...-..+..+-.+........+...++|.+...++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 4556677888888888888887777888899888877543 22222223333344444445566788888888777 55
Q ss_pred ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-ccCCc
Q 007842 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPH 488 (587)
Q Consensus 410 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~ 488 (587)
+-+++..+++.+..+.+...++.+.+.++|++...++|.+..++..++..+..+.+.+...+..+.++|.+..+ ++..+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 67788889999999999999999999999999999999999999999999999999888877889999999886 56668
Q ss_pred hhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc--hHHHHhhHHHHHHHhcCCCC
Q 007842 489 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPD 566 (587)
Q Consensus 489 ~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~i~~~l~~l~~d~d 566 (587)
..+|.+++.|++.+++.++.....+.++|.+.. .+-.++.+-....++...+.-... .+...+.++|.+..+...+-
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 899999999999999887776566666665544 455577777777777766553322 25556788888888765444
Q ss_pred ccH
Q 007842 567 VDV 569 (587)
Q Consensus 567 ~~V 569 (587)
-++
T Consensus 522 L~~ 524 (700)
T KOG2137|consen 522 LNG 524 (700)
T ss_pred ccH
Confidence 443
No 86
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.80 E-value=0.00013 Score=74.94 Aligned_cols=367 Identities=15% Similarity=0.150 Sum_probs=212.5
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC--hhhhhhch
Q 007842 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCVAHI 242 (587)
Q Consensus 167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l 242 (587)
.+..++...+.-+| .+...|.+++.....+ -....+++.+..+++.++..+...++..|..++-.-. .......+
T Consensus 254 k~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 254 KLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 33344444444444 4455566666543321 2334567777777877788888888888887763322 13345568
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHH
Q 007842 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQ 318 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~ 318 (587)
++.+.+++..++..++..+++.|.++...-. .......++|.+..+++|+ ..|..++..|..++..-... ....
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc
Confidence 8889999998889999999999988764311 1223446889999999875 45566777777776521111 1112
Q ss_pred hHhHHHHHhc-cCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHh-hcCCChHHHHHHHHhhhhhhhhhchh--
Q 007842 319 HILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGID-- 392 (587)
Q Consensus 319 ~i~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~-- 392 (587)
..+|.+.+++ ..++.++...++..+.+++..-.... .....++.+... ++..++ + .++.+..++.+-|..
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~-l---LlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP-L---LLKLIRNISQHDGPLKE 486 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH-H---HHHHHHHHHhcCchHHH
Confidence 3567766643 44566676666666666654322111 111223333332 332222 2 223444444443321
Q ss_pred hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhCh----hhhH--HHHHHHHHHhcCCC--chHHHHHHHHHHHHH
Q 007842 393 LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV----GFFD--DKLGALCMQWLQDK--VYSIRDAAANNLKRL 463 (587)
Q Consensus 393 ~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~----~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l 463 (587)
.+.+. +..+...+.. +++ ...++++|.+++.--+ ..+. -.++|.+.+.+... ..++...++..+|.+
T Consensus 487 ~f~~~-i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 487 LFVDF-IGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred HHHHH-HHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 12222 2223333333 333 3566667666654311 1122 24788888888543 346888888888887
Q ss_pred HHHhChH--HHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccCh-HHH--HhhHHHHHHhhcCCCChhHHHHHHH
Q 007842 464 AEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS-EIT--CSRLLPVVINASKDRVPNIKFNVAK 536 (587)
Q Consensus 464 ~~~~~~~--~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~-~~~--~~~il~~l~~~l~d~~~~vR~~~~~ 536 (587)
+..-... .....+++.+.++++.. +...-...+.++..+..+-.. +.. ...+...++.+++|+++.||..+-.
T Consensus 563 a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 563 ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDN 642 (708)
T ss_pred HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHH
Confidence 7532211 12356778887776544 455555666777776653211 111 2457778999999999999999999
Q ss_pred HHHHhhhh
Q 007842 537 VLQSLIPI 544 (587)
Q Consensus 537 ~l~~l~~~ 544 (587)
+|..+...
T Consensus 643 ~Ldii~e~ 650 (708)
T PF05804_consen 643 ALDIIAEY 650 (708)
T ss_pred HHHHHHHh
Confidence 99887654
No 87
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.78 E-value=9.6e-08 Score=71.21 Aligned_cols=84 Identities=23% Similarity=0.361 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHH--HHhhHHHHHHHhcCCCC
Q 007842 491 YRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPD 566 (587)
Q Consensus 491 ~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~d 566 (587)
.|..++.++..++..++.. .+.+.++|.++..+.|+++.||..++++|.+++...+.+. +...+++.|-++..|+|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4778888888887777664 3578899999999999999999999999999998877663 45789999999999999
Q ss_pred ccHHHHHH
Q 007842 567 VDVRFFAT 574 (587)
Q Consensus 567 ~~Vr~~a~ 574 (587)
++||..|.
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 99998873
No 88
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.0005 Score=70.86 Aligned_cols=307 Identities=14% Similarity=0.115 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-------------chhhhHHHHHHHHhhhCCchhH---HHH
Q 007842 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------AHLKTDIMSIFEDLTQDDQDSV---RLL 221 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-------------~~~~~~l~~~l~~l~~d~~~~v---r~~ 221 (587)
|+....+++.+..++++.+...-..++-++..+++...- +.+.+.++.....++.+++... .+.
T Consensus 122 p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~kl 201 (1010)
T KOG1991|consen 122 PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKL 201 (1010)
T ss_pred cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 345677788888888887777667777777777766531 1233445555556666654432 222
Q ss_pred HHHHHHHHh-hhcChhhh----hhchHHHHHHhc-----------------cCCcHHHHHHHHHHHHHHHHHhCCCcccc
Q 007842 222 AVEGCAALG-KLLEPQDC----VAHILPVIVNFS-----------------QDKSWRVRYMVANQLYELCEAVGPEPTRM 279 (587)
Q Consensus 222 a~~~l~~l~-~~~~~~~~----~~~l~~~l~~~~-----------------~d~~~~vR~~a~~~l~~~~~~~~~~~~~~ 279 (587)
.++++-+++ -.+|.... ...-+.++...+ .++-|++++=|+..+.++....|+.....
T Consensus 202 IlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~ 281 (1010)
T KOG1991|consen 202 ILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVV 281 (1010)
T ss_pred HHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccc
Confidence 333332222 12332211 111122222222 23467899999999999998887532111
Q ss_pred ----------------chHHHHHHhcC---C---ChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc---------
Q 007842 280 ----------------DLVPAYVRLLR---D---NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS--------- 328 (587)
Q Consensus 280 ----------------~l~~~l~~~l~---d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~--------- 328 (587)
.++..+.+.+. . -.++|-..++.-+. ..+......+.+-|.+..++
T Consensus 282 ~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~---~~Vs~~~twkll~PHl~~ii~~vIFPlmc 358 (1010)
T KOG1991|consen 282 PEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLE---QCVSHASTWKLLKPHLQVIIQDVIFPLMC 358 (1010)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH---HhccHHHHHHHhhhHHHHHHHHhhhhhcC
Confidence 12222222211 0 01222222222221 12222222222333322111
Q ss_pred ----------cCCcHHHHH-------------HHHHHHHccccccchhHHHHhHHHHHHHhhc------CC--ChHHHHH
Q 007842 329 ----------SDSSQHVRS-------------ALASVIMGMAPLLGKDATIEQLLPIFLSLLK------DE--FPDVRLN 377 (587)
Q Consensus 329 ----------~d~~~~vr~-------------~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~--~~~vr~~ 377 (587)
.|+...+|. ++...+..++...|++. .+.+++++...++ .+ ++.-+.+
T Consensus 359 ~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~-l~k~l~F~~~Il~~~~~~~~~~~~~rqkdG 437 (1010)
T KOG1991|consen 359 FNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET-LPKILSFIVDILTRYKEASPPNKNPRQKDG 437 (1010)
T ss_pred CCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHhhcccCCCccChhhhhh
Confidence 245555654 55556666666666654 4566777777766 33 3455667
Q ss_pred HHHhhhhhhhhhchh-----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH-hhChhhhHHHHHHHHHHhcC-CCch
Q 007842 378 IISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS-QLGVGFFDDKLGALCMQWLQ-DKVY 450 (587)
Q Consensus 378 a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~-d~~~ 450 (587)
|+..++.++..+.++ .+...+.+.+...++++.-..|..++..++.++. .+..............+.+. |++.
T Consensus 438 AL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~l 517 (1010)
T KOG1991|consen 438 ALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNEL 517 (1010)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcC
Confidence 899999888776543 2223344555556788889999999999999883 34433334455666666666 9999
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 007842 451 SIRDAAANNLKRLAEEFG 468 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~~ 468 (587)
.||..|+-+|..++....
T Consensus 518 PV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 518 PVRVEAALALQSFISNQE 535 (1010)
T ss_pred chhhHHHHHHHHHHhcch
Confidence 999999999999987544
No 89
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.74 E-value=9.3e-05 Score=72.52 Aligned_cols=416 Identities=14% Similarity=0.077 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHhc--CCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHHHhhhc
Q 007842 160 LKTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 160 ~~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~ 233 (587)
++..-.+.+..+. ++++++.+......++.++..-.. +......++-+.+++.+.+ ..++.++...+..+...-
T Consensus 48 ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 48 IKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred hhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 3444556666554 455677777778888887765432 1233445667778888777 799999999999988765
Q ss_pred Ch-----hhhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCCc------cccchHHHHHHhcCCChHHHHHHHH
Q 007842 234 EP-----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP------TRMDLVPAYVRLLRDNEAEVRIAAA 301 (587)
Q Consensus 234 ~~-----~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~ 301 (587)
+. ......+++.+..+...+ ....+..+. ++.+..... .-..+...+.-++.-.+..+|.+|.
T Consensus 128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~-----~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL 202 (678)
T KOG1293|consen 128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS-----RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAAL 202 (678)
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh-----hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHH
Confidence 42 122344555555544411 111111111 111111100 0112333333333444678899999
Q ss_pred HhHHHHHhhhC-HH----H-----HHHhHhH--HHHHhccCCcHHHHHHHHHHHHcccccc-chh-----H-H---H-Hh
Q 007842 302 GKVTKFCRILN-PE----L-----AIQHILP--CVKELSSDSSQHVRSALASVIMGMAPLL-GKD-----A-T---I-EQ 358 (587)
Q Consensus 302 ~~l~~l~~~~~-~~----~-----~~~~i~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~-----~-~---~-~~ 358 (587)
.++......+- ++ . .-..+.+ .+.++.+|++...|...+.++..+...- ..+ . + . +.
T Consensus 203 ~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~ 282 (678)
T KOG1293|consen 203 LCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSL 282 (678)
T ss_pred HHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHH
Confidence 98884222211 11 0 1122334 4557788888888888777777654322 100 0 0 0 01
Q ss_pred HHH-HHHHhhcCCChHHHHHHHHh---hhhhhhhhchhhHHhhHHHHHHHH------hcCCChHHHHHHHHHH---HHHH
Q 007842 359 LLP-IFLSLLKDEFPDVRLNIISK---LDQVNQVIGIDLLSQSLLPAIVEL------AEDRHWRVRLAIIEYI---PLLA 425 (587)
Q Consensus 359 l~~-~l~~~l~d~~~~vr~~a~~~---l~~l~~~~~~~~~~~~~l~~l~~~------~~~~~~~vR~~~~~~l---~~l~ 425 (587)
+.. ....+..|+-...-..+... +..+.+.+...++....++...++ +.....+.|..++.-. ...+
T Consensus 283 i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~ 362 (678)
T KOG1293|consen 283 IVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLE 362 (678)
T ss_pred HHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhh
Confidence 111 11122223211111111111 111222222222222222222222 1334455554443321 1111
Q ss_pred HhhChh---hhHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHH---hChHHHhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842 426 SQLGVG---FFDDK-LGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWAMQHITPQVLEMINNPHYLYRMTILRA 498 (587)
Q Consensus 426 ~~~~~~---~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~ 498 (587)
...+.. .+.+. ....+....--.+..++.+|+.++..+.+. +..+.-...+...+.+++.||+..+..+++.+
T Consensus 363 ~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lga 442 (678)
T KOG1293|consen 363 YGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGA 442 (678)
T ss_pred hhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHH
Confidence 111211 11111 111122222345677888998888877653 22222345667778888899999999999999
Q ss_pred HHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHHhcCCCCccHHH
Q 007842 499 ISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRF 571 (587)
Q Consensus 499 l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~d~~Vr~ 571 (587)
+.++.-.+++ .+.....+..+..++.++++++|..+.++|..+.-..... .........+..+.+|+|+.|+.
T Consensus 443 i~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqe 522 (678)
T KOG1293|consen 443 ICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQE 522 (678)
T ss_pred HHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHH
Confidence 9999877665 3456778889999999999999999999999887654433 22223345566688999999999
Q ss_pred HHHHHHHHH
Q 007842 572 FATQAIQSI 580 (587)
Q Consensus 572 ~a~~al~~l 580 (587)
.+.+.+..+
T Consensus 523 q~fqllRNl 531 (678)
T KOG1293|consen 523 QCFQLLRNL 531 (678)
T ss_pred HHHHHHHHh
Confidence 887776554
No 90
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.73 E-value=5.9e-05 Score=77.47 Aligned_cols=372 Identities=14% Similarity=0.148 Sum_probs=224.3
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--Cccccc
Q 007842 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMD 280 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ 280 (587)
.-+..++...+.-.| .++..|..+++...- ......+++.+.++++..+..+...++..+.+++-...+ ......
T Consensus 253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 334444444444444 667778888876543 234566888899999888888988888888887643221 223456
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc-h-hHHH
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K-DATI 356 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~-~~~~ 356 (587)
+++.+.+++..++..++..+++.|..++..-... -....++|.+..++.+++ .|..+...+..++..-. + ....
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh
Confidence 8999999999999999999999999887533221 233457888889888765 45556666666654211 1 1112
Q ss_pred HhHHHHHHHhhcC-CChHHHHHHHHhhhhhhhhhchhh-H-HhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhhCh--
Q 007842 357 EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDL-L-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV-- 430 (587)
Q Consensus 357 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~-~-~~~~l~~l~~~-~~~~~~~vR~~~~~~l~~l~~~~~~-- 430 (587)
...+|.+.+++.. +++.+...++..+..++..-...+ + ....++.+.+. ++..+ ..+++.+..++.+-|+
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLK 485 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHH
Confidence 3456777766543 445555444444333332211110 0 01223444332 22222 2244555555555432
Q ss_pred hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HhChHHH--hhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcc
Q 007842 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE-EFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLAPV 505 (587)
Q Consensus 431 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~--~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~ 505 (587)
..|.+.+.+++-.....++.+....++.+|+++.- ..+...+ ...++|.+.+.+..+ ...+...++..+|.++..
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d 565 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD 565 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC
Confidence 23444444443333333455554445555544432 1122212 247899998888654 346777788888888753
Q ss_pred cChHH--HHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchHH---HHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842 506 MGSEI--TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDVDVRFFATQAIQ 578 (587)
Q Consensus 506 ~~~~~--~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~~---~~~~i~~~l~~l~~d~d~~Vr~~a~~al~ 578 (587)
-.... ....+++.++.+++.+ +.+.-...+.++.++..+-.... ....+...+..++.|+.+.||..+-.+|.
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ld 645 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALD 645 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 22222 2456788888887654 57777788888888876532221 12467888899999999999999999999
Q ss_pred HHHHh
Q 007842 579 SIDHV 583 (587)
Q Consensus 579 ~l~~~ 583 (587)
.++++
T Consensus 646 ii~e~ 650 (708)
T PF05804_consen 646 IIAEY 650 (708)
T ss_pred HHHHh
Confidence 98874
No 91
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.73 E-value=3e-05 Score=76.63 Aligned_cols=289 Identities=14% Similarity=0.123 Sum_probs=172.7
Q ss_pred hhHHHHHHHHHHHHHHhhcChhh-------H-HhhHHHHHHHHhcCC-----C--CcchhhHHhhhHhhcCCCChHHHHH
Q 007842 99 ETCVRDKAVESLCRIGSQMRESD-------L-VDWYIPLVKRLAAGE-----W--FTARVSACGLFHIAYPSAPDILKTE 163 (587)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~~-------~-~~~l~~~l~~l~~~~-----~--~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (587)
+...-...+.++..+......+. . ...++|.+.++.... . ..+-.....+++.+...++++..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44455566666666655432211 1 122566555544322 1 2222334556666777777765544
Q ss_pred HHHHHHHhcC----------CCC--hHHHHHHHHhHHHHHHhhccchhh---hHHHHHHHHhh-hCCchhHHHHHHHHHH
Q 007842 164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDLT-QDDQDSVRLLAVEGCA 227 (587)
Q Consensus 164 l~~~l~~l~~----------d~~--~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~l~-~d~~~~vr~~a~~~l~ 227 (587)
+..-+..+.. +.+ ..........+..+...+.++... ..++..+..+. +.+++..|..+++.+.
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4544433322 111 112333444445555555543322 22444444443 4445889999999999
Q ss_pred HHhhhcChhhhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 007842 228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (587)
Q Consensus 228 ~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 304 (587)
.+.+.++++...+.++..+.... .......|..+.+.+..+.+.+ ........++..+..++.| +.+...+++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99999876544445555444444 4555667778888887777653 2222334678888888887 67888888988
Q ss_pred HHHHhhhC---------------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHH---HHhHHHHHHHh
Q 007842 305 TKFCRILN---------------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL 366 (587)
Q Consensus 305 ~~l~~~~~---------------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~ 366 (587)
+.+....+ .+.+...++|.+.+...+.+...|.....++..+....+...+ .+.++|.+.+.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 88765421 2234466777777777766666777777777777777765443 45678888888
Q ss_pred hcCCChHHHHHHHHhhhhhhhhh
Q 007842 367 LKDEFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~ 389 (587)
+.-++.+++.++++++..+...-
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHcC
Confidence 87777778888888777776543
No 92
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.9e-05 Score=74.00 Aligned_cols=465 Identities=13% Similarity=0.118 Sum_probs=255.9
Q ss_pred hcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC--CCcchhhHHhhhHhhcCCCChHHHHHHHH-HHHHh
Q 007842 95 CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYPSAPDILKTELRS-IYTQL 171 (587)
Q Consensus 95 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~~~~~~~~~l~~-~l~~l 171 (587)
++|+++.-|--|+..+.++...- +.++.....+..+. .+.+. .|+++ .++.. ++..+
T Consensus 56 lkd~~~~~ra~alqv~~~~l~gs------k~fls~a~~~~~~~ftpf~v~-~a~si-------------~~~~r~l~~~l 115 (728)
T KOG4535|consen 56 LKDPSPKTRACALQVLSAILEGS------KQFLSVAEDTSDHAFTPFSVM-IACSI-------------RELHRCLLLAL 115 (728)
T ss_pred cCCCChhHHHHHHHHHHHHHHhh------HHHHHHHhccCCcCCCchHHH-HHHHH-------------HHHHHHHHHHH
Confidence 57899999999998888875431 11222222222111 11111 11111 11122 23334
Q ss_pred cCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHH
Q 007842 172 CQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247 (587)
Q Consensus 172 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 247 (587)
....++.+-..+.+++..++...+-.. +...+...+..+++..++.||..++..++.+...-.+ .+++-..+.
T Consensus 116 ~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~---~pei~~~~~ 192 (728)
T KOG4535|consen 116 VAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAP---LPEVQLLLQ 192 (728)
T ss_pred HHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCC---CHHHHHHhc
Confidence 445566777777888888877654322 3445566677788899999999999999888754322 111211121
Q ss_pred Hhcc----------CCcHHHHHHHHHHHHHHHHHhCCC-ccccc-----------------hHHHHHHhcCCC--hHHHH
Q 007842 248 NFSQ----------DKSWRVRYMVANQLYELCEAVGPE-PTRMD-----------------LVPAYVRLLRDN--EAEVR 297 (587)
Q Consensus 248 ~~~~----------d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~-----------------l~~~l~~~l~d~--~~~vr 297 (587)
..++ .++|.-+-.+--.+.+....-++. ..+.. ...-....++.. -..+|
T Consensus 193 ~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~r 272 (728)
T KOG4535|consen 193 QPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMR 272 (728)
T ss_pred CCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhH
Confidence 1111 112222111111221111110000 00001 111112222221 24589
Q ss_pred HHHHHhHHHHHhhhCHH-HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh----HHHH--hHHHHHHHhh---
Q 007842 298 IAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIE--QLLPIFLSLL--- 367 (587)
Q Consensus 298 ~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~--~l~~~l~~~l--- 367 (587)
..|+..+..++.+++-. -+.-++...+...+.+..+.++..++.++..++...+.+ .... .--|+..-++
T Consensus 273 le~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p 352 (728)
T KOG4535|consen 273 LEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGP 352 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCC
Confidence 99999999888887753 333456666677788889999988888888776655421 1100 0111111112
Q ss_pred ------cCCChHHHHHHHHhhhhhhhhh--chhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChh---hhHH
Q 007842 368 ------KDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG---FFDD 435 (587)
Q Consensus 368 ------~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~---~~~~ 435 (587)
....+....+++.++.++...- +-+.-.....+.+..-+.|. +.-+|.+++..+....-+-+.. .|..
T Consensus 353 ~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~ 432 (728)
T KOG4535|consen 353 LPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVA 432 (728)
T ss_pred ChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHH
Confidence 1123445566666666665422 11111235566776666553 4446666666654433222211 1333
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh-----HH----HhhhhHHHHHhhcc---CCchhHHHHHHHHHHHhh
Q 007842 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-----EW----AMQHITPQVLEMIN---NPHYLYRMTILRAISLLA 503 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~~----~~~~l~~~l~~~l~---d~~~~~R~~a~~~l~~l~ 503 (587)
.....+...+.|....+|..+.-+++.+...+-. +. +...++..+....+ -.+++||-.+.++++++.
T Consensus 433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 4455667778899999999999999999876521 11 22333434433322 236889999999999998
Q ss_pred cccChHH--HHhhHHH-HHHhh----cCCCChhHHHHHHHHHHHhhhh----hchHHHHhhHHHHHHHhcC-CCCccHHH
Q 007842 504 PVMGSEI--TCSRLLP-VVINA----SKDRVPNIKFNVAKVLQSLIPI----VDQSMVEKTIRPCLVELTE-DPDVDVRF 571 (587)
Q Consensus 504 ~~~~~~~--~~~~il~-~l~~~----l~d~~~~vR~~~~~~l~~l~~~----~~~~~~~~~i~~~l~~l~~-d~d~~Vr~ 571 (587)
+.+.+-. ....++. ...++ .......||-++|.+++++.++ +....+...++++|-.+.. .....||.
T Consensus 513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence 7554210 1111221 12221 2234678999999999999875 3444677889999999654 55779999
Q ss_pred HHHHHHHHHHH
Q 007842 572 FATQAIQSIDH 582 (587)
Q Consensus 572 ~a~~al~~l~~ 582 (587)
.|+.||..-++
T Consensus 593 ~AA~aL~vp~~ 603 (728)
T KOG4535|consen 593 RAAAALSVPGK 603 (728)
T ss_pred hhhhhhcCCCC
Confidence 99999876544
No 93
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.71 E-value=0.00029 Score=69.22 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHHHHHHHHhh---ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHH
Q 007842 408 DRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVL 481 (587)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~ 481 (587)
.++..++.+++..+..+++.+ ..+.-..++...+++++.|++..|...+..++.+++-.+++ .|.....+..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 345566777776666665543 22222344556677778999999999999999999987765 355678899999
Q ss_pred hhccCCchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 482 EMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 482 ~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
.+..++++.+|..+.+++.++.-...... ..+.-...+..+.+||++.|...+.+.+.++.-.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999975544322 2333455677888999999999999999987654
No 94
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.69 E-value=1e-07 Score=71.47 Aligned_cols=86 Identities=28% Similarity=0.409 Sum_probs=65.2
Q ss_pred HHHHHhhc-cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHH
Q 007842 477 TPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR 555 (587)
Q Consensus 477 ~~~l~~~l-~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~ 555 (587)
+|.+.+.+ +++++.+|..++.+++.+.. +..+|.+..+++|+++.||..++.+|+.+.. ...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 45666766 88889999999999885532 4678888888899999999999999998742 3567
Q ss_pred HHHHHhcC-CCCccHHHHHHHHHH
Q 007842 556 PCLVELTE-DPDVDVRFFATQAIQ 578 (587)
Q Consensus 556 ~~l~~l~~-d~d~~Vr~~a~~al~ 578 (587)
+.|.+++. |++..||..|..+|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 77777554 455667888888875
No 95
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=0.0011 Score=69.64 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=111.1
Q ss_pred ChhhhHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhh
Q 007842 429 GVGFFDDKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLA 503 (587)
Q Consensus 429 ~~~~~~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~ 503 (587)
|+......+.|++..... -.++.++.+|.-+++.++- +..+ |.+.-+|.++.+++ .|++.+|.+++-++|.++
T Consensus 912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 544555667888877763 3568999999999999985 3333 44556888888775 889999999999999998
Q ss_pred cccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842 504 PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 504 ~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
-.++. ..+...+.+...+.|+++.||.+++.++..++.+ ...-...-++-+..++.|+++.|+..|..=+..+
T Consensus 990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 76654 3466778899999999999999999999988754 1111234566677788999999999998544443
No 96
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.64 E-value=5.6e-05 Score=71.05 Aligned_cols=291 Identities=15% Similarity=0.104 Sum_probs=183.2
Q ss_pred hhHHHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccc----cchHHH-HHH-h
Q 007842 216 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----MDLVPA-YVR-L 288 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~----~~l~~~-l~~-~ 288 (587)
..+|..+.+.+..++.+++- ..+.-.+...+.....+..+.++..++..+.+++..++.+..+ ..+... |-. +
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~ 348 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM 348 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence 36899999999998888764 2345567777888888999999999999999998877632211 111111 111 1
Q ss_pred c--------CC-ChHHHHHHHHHhHHHHHhh----hCHHHHHHhHhHHHHHhccCC-cHHHHHHHHHHHHccccccchh-
Q 007842 289 L--------RD-NEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD- 353 (587)
Q Consensus 289 l--------~d-~~~~vr~~a~~~l~~l~~~----~~~~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~- 353 (587)
+ .| ..+....+.+.++..+... +++. .....+.+...+.|. +.-+|.++..+++.+.-.-+..
T Consensus 349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~--~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND--RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc--chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence 1 12 2244555666666555432 1221 135566677666665 5568888888888766544321
Q ss_pred --HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---------hhHHhhHHHHHHHHh---cCCChHHHHHHHH
Q 007842 354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------DLLSQSLLPAIVELA---EDRHWRVRLAIIE 419 (587)
Q Consensus 354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~~~l~~l~~~~---~~~~~~vR~~~~~ 419 (587)
.+.......+...+.|..-++|..++.+++.+...+-. +.+....+..+.... .-.+.+||..+++
T Consensus 427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 23344455566677787889999999999998865521 122223333333322 2346889999999
Q ss_pred HHHHHHHhhCh---hhhHH----HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh----HHHhhhhHHHHHhhccC-C
Q 007842 420 YIPLLASQLGV---GFFDD----KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINN-P 487 (587)
Q Consensus 420 ~l~~l~~~~~~---~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d-~ 487 (587)
.++.+.+.+.+ -.+.+ .+...+-.........||..++.+++++++.-.. ......+++.+..++.+ .
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 99988776531 11111 1112222222345678999999999999974322 22457788888887654 6
Q ss_pred chhHHHHHHHHHHHhhcccCh
Q 007842 488 HYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 488 ~~~~R~~a~~~l~~l~~~~~~ 508 (587)
|+++|..|..++..-.+..+.
T Consensus 587 NFKVRi~AA~aL~vp~~re~~ 607 (728)
T KOG4535|consen 587 NFKVRIRAAAALSVPGKREQY 607 (728)
T ss_pred cceEeehhhhhhcCCCCcccc
Confidence 899999999998877664443
No 97
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.61 E-value=0.00011 Score=74.77 Aligned_cols=127 Identities=13% Similarity=0.169 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCCh
Q 007842 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 528 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~ 528 (587)
+-||..++-++++++-.-+ ...+..+|.+.+-+. .....+|.+.+-+++.++..... +.+..+|.+...+.|+++
T Consensus 945 ~~vra~~vvTlakmcLah~--~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD--RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchH
Confidence 4588888899999885433 356778998877554 34567898888888888753321 457789999999999999
Q ss_pred hHHHHHHHHHHHhhhhhchHHHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 529 NIKFNVAKVLQSLIPIVDQSMVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 529 ~vR~~~~~~l~~l~~~~~~~~~~-~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.||..++-.|.++... +.-.+. ..++..+.. +-|..++||.-|.-.++.+-+
T Consensus 1021 iVRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQF-GIVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HHHHHHHHHHHHHHhh-hhhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHh
Confidence 9999999999998753 222222 233344333 468889999999888877644
No 98
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.1e-05 Score=69.75 Aligned_cols=226 Identities=18% Similarity=0.213 Sum_probs=135.3
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC--ChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 398 (587)
+..+.+...|.+.-.+...+.++++.. ...-+|.+...+.|. .+-||-.|..+|+.+.. +..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~ 101 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES 101 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence 344444455555555556666665554 123456666666554 46677777777777652 345
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCch--------HHHHHHHHHHHHHHHHhChH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY--------SIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--------~vr~~a~~~l~~l~~~~~~~ 470 (587)
.+.+.++.+|+-..+|..+..++..+--.-+.+.. ....|.. . .|+.+ +.|......=..+...+..-
T Consensus 102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~-S--vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~am 177 (289)
T KOG0567|consen 102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYI-S--VDPAPPANLSSVHELRAELLDETKPLFERYRAM 177 (289)
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccc-c--CCCCCccccccHHHHHHHHHhcchhHHHHHhhh
Confidence 66666666777777777655555444211000000 0000000 0 11111 11211111111111111111
Q ss_pred HH-----hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhh
Q 007842 471 WA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 471 ~~-----~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~ 543 (587)
|. .+.-+..+.+.+.+++.-.|..+..++|.+-. +..+|.+.+.+.|. ++-||..++++|+.++.
T Consensus 178 F~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 178 FYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred hHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 11 13456777788888889999999999999865 45577777777654 78899999999999976
Q ss_pred hhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 544 ~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+..++.|.+++.|+++-||..+.-||+.+..
T Consensus 250 --------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 250 --------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred --------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999987653
No 99
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.57 E-value=6.3e-07 Score=66.86 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=52.7
Q ss_pred HHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCCh
Q 007842 297 RIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP 372 (587)
Q Consensus 297 r~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~ 372 (587)
|++++-+|..++..++.. .+.+.++|.+...+.|++++||..+++++.+++...+.+. +.+.+++.+.+++.|.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 566666666666655543 4556677777777777777777777777777766554332 245566666667777777
Q ss_pred HHHHHH
Q 007842 373 DVRLNI 378 (587)
Q Consensus 373 ~vr~~a 378 (587)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 776655
No 100
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00023 Score=67.55 Aligned_cols=255 Identities=17% Similarity=0.148 Sum_probs=158.6
Q ss_pred HhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHH-HhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (587)
..++-.+..-..|++..+|..++..+++.+...+... +...++..+. .+..+.+.+|...++.+|..+.+.......
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 3455556666789999999999999999998765432 3444455444 444556789999999999998887766655
Q ss_pred HhhHHHH---HHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHH----HHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842 395 SQSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLG----ALCMQWLQDKVYSIRDAAANNLKRLA 464 (587)
Q Consensus 395 ~~~~l~~---l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~----~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
...+++. +..+..+.+..+|.+++..++.+++.-| .++|.+.+. | +.-.++|+++.|-.+.-..+.
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~--- 412 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQDPNPYVARACRSELR--- 412 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeCCCChHHHHHHHHHHH---
Confidence 5555544 4557789999999999999999988765 344444333 3 333568999887654433333
Q ss_pred HHhChHHHhhhhHHHHHhhccCCchhHHHHHH--HHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTIL--RAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~--~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
..++....+.....+-+.+ |.+.. |.... .++.++...+. + ..-.......-.++...++||.++..--+...
T Consensus 413 -~c~p~l~rke~~~~~q~~l-d~~~~-~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~v 487 (533)
T KOG2032|consen 413 -TCYPNLVRKELYHLFQESL-DTDMA-RFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSV 487 (533)
T ss_pred -hcCchhHHHHHHHHHhhhh-HHhHH-HHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHH
Confidence 3333322222222221111 21111 11111 11112221111 1 11122233333456667799999988888777
Q ss_pred hhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 543 PIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 543 ~~~~~~----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.++.++ ....++...+..+..|+-++|+..|.+|++.+.
T Consensus 488 d~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 488 DSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 666554 234567778888999999999999999999874
No 101
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.3e-06 Score=80.09 Aligned_cols=226 Identities=16% Similarity=0.083 Sum_probs=109.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc-CCCChHHHHHHHHHHHHhcCC
Q 007842 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY-PSAPDILKTELRSIYTQLCQD 174 (587)
Q Consensus 96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~-~~~~~~~~~~l~~~l~~l~~d 174 (587)
..+++.||..++-.|+-.+..-... .+...+++.+..+.-..-.+|.-.+|.++ ...+++..++++.+-. +.
T Consensus 424 ~~~~e~v~hG~cLGlGLa~mGSa~~----eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~---ET 496 (929)
T KOG2062|consen 424 TAENEVVRHGACLGLGLAGMGSANE----EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQ---ET 496 (929)
T ss_pred hccchhhhhhhhhhccchhcccccH----HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhh---hh
Confidence 3456777777776666554433322 23444444444432221122222233222 2232333222222211 12
Q ss_pred CChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCc
Q 007842 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254 (587)
Q Consensus 175 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~ 254 (587)
.+..+.+...-.+.-++-.- .+..-+++.+++.|.++..|..+...+..- .++.. ....+-.++.-..+|.+
T Consensus 497 QHeki~RGl~vGiaL~~ygr-----qe~Ad~lI~el~~dkdpilR~~Gm~t~alA--y~GTg-nnkair~lLh~aVsD~n 568 (929)
T KOG2062|consen 497 QHEKIIRGLAVGIALVVYGR-----QEDADPLIKELLRDKDPILRYGGMYTLALA--YVGTG-NNKAIRRLLHVAVSDVN 568 (929)
T ss_pred hHHHHHHHHHHhHHHHHhhh-----hhhhHHHHHHHhcCCchhhhhhhHHHHHHH--HhccC-chhhHHHhhcccccccc
Confidence 23344444443333322211 123445666667777777777665554321 11111 12223333333456777
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcH
Q 007842 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 333 (587)
Q Consensus 255 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~ 333 (587)
..||++|+.+||-++.. ....+|..++++. +.++.||.+++-+|+-.+...|... .+..+..+..|+..
T Consensus 569 DDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~ 638 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVD 638 (929)
T ss_pred hHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHH
Confidence 77777777777765532 2234444444443 4457777777777777666666532 34555556667777
Q ss_pred HHHHHHHHHHHcc
Q 007842 334 HVRSALASVIMGM 346 (587)
Q Consensus 334 ~vr~~a~~~l~~l 346 (587)
-||..|+-++.-+
T Consensus 639 fVRQgAlIa~amI 651 (929)
T KOG2062|consen 639 FVRQGALIALAMI 651 (929)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766655544
No 102
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.49 E-value=9.5e-06 Score=80.48 Aligned_cols=232 Identities=15% Similarity=0.222 Sum_probs=175.2
Q ss_pred hHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCC
Q 007842 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEF 371 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~ 371 (587)
++.-+..-.+.|..+...++...+..+++|.+...+.+. ...-...-.+-.+++......+...++|.+...++ ...
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 445555667778888888888888899999998776432 22222223333455555666677788888888877 556
Q ss_pred hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh-cCCCch
Q 007842 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVY 450 (587)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~ 450 (587)
.++....++.+..+.+....+.+.+.++|.+...+++.+..+...+++.++.+++.+......+.++|.+.++ +...+.
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 7788888899999999999999999999999999999999999999999999999998777888899988765 567889
Q ss_pred HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc--ccChHHHHhhHHHHHHhhcCCCC
Q 007842 451 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRV 527 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~ 527 (587)
.||..++.+++.+++.+..-...+.+.|.+..+ +..++.+-...+.+...++- ..|.+...+.++|.++.+...+.
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 999999999999998776655566666666554 44556666666666666543 33445667888998888776554
No 103
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.48 E-value=7.2e-05 Score=73.91 Aligned_cols=260 Identities=17% Similarity=0.150 Sum_probs=146.2
Q ss_pred CcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhH
Q 007842 139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSV 218 (587)
Q Consensus 139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~v 218 (587)
...+..|+..++.+++++ |+..+..+..+..+|+|++..||..+...|..++.. .+.+.+.+..+|.++++.+++..
T Consensus 36 ~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVADVLVQLLQTDDPVE 112 (556)
T ss_dssp HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHHHHHHHHhcccHHH
Confidence 456677888888999988 567888999999999999999999999999999987 35778899999999999888777
Q ss_pred HHHHHHHHHHHhhhcChhhhhhchHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHhCCCcc------ccchHHHHHHhcC
Q 007842 219 RLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPT------RMDLVPAYVRLLR 290 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--~d~~~~vR~~a~~~l~~~~~~~~~~~~------~~~l~~~l~~~l~ 290 (587)
+...-++|..+...-+.. .+..++.++. ...+..+|..+++.|..-...++.+.. ...++..+.+.++
T Consensus 113 ~~~v~~sL~~ll~~d~k~----tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~ 188 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPKG----TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ 188 (556)
T ss_dssp HHHHHHHHHHHHHH-HHH----HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCcHH----HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence 777777777766543322 2333333333 234567999998888665555554332 2356777788888
Q ss_pred CChHHHHHHHHHhHHHHHhh--hCHHHHHHhHhHHHHHhcc-----C-CcH----HHHHHHHHHHHccccccchhHHHHh
Q 007842 291 DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSS-----D-SSQ----HVRSALASVIMGMAPLLGKDATIEQ 358 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~~~-----d-~~~----~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (587)
|-..+-=...+..|..+-.. .........+++.+..... + .+. ++...+-.++..+........+..+
T Consensus 189 DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y 268 (556)
T PF05918_consen 189 DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY 268 (556)
T ss_dssp T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH
T ss_pred hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH
Confidence 84322222222333322211 1112233556666654331 1 122 2333444455555544444444444
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh
Q 007842 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~ 406 (587)
+...++..+.+-.++.+...++.++.++...+... ...++|.+.+++
T Consensus 269 ~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 269 MCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp HHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred HHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 44444444555567888899999999999888654 345555555544
No 104
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.48 E-value=2.1e-06 Score=64.30 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=57.3
Q ss_pred HHHHHhc-cCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHH
Q 007842 322 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (587)
Q Consensus 322 ~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 400 (587)
|.+.+.+ +|+++.+|..++.+++.+. .+..+|.+..+++|+++.||..++.+++.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4555555 7778888888888877554 23557777777788888888888888877642 34566
Q ss_pred HHHHHhcC-CChHHHHHHHHHHH
Q 007842 401 AIVELAED-RHWRVRLAIIEYIP 422 (587)
Q Consensus 401 ~l~~~~~~-~~~~vR~~~~~~l~ 422 (587)
.+.+.+.+ +++.+|..++.+++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 66666554 44556777766653
No 105
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.46 E-value=0.0011 Score=67.97 Aligned_cols=458 Identities=15% Similarity=0.105 Sum_probs=235.5
Q ss_pred ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhc------------------
Q 007842 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQM------------------ 117 (587)
Q Consensus 56 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~------------------ 117 (587)
++|.-..+|..+...+.++....++.. ...++..+-+.-.|+...+++.+...+..-....
T Consensus 481 ClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~ 559 (1529)
T KOG0413|consen 481 CLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQ 559 (1529)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhh
Confidence 677777888887776666554434322 2223332222233444566655554443321111
Q ss_pred ---------ChhhHHhhHHHHHHHHhc-CCCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHh
Q 007842 118 ---------RESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASN 186 (587)
Q Consensus 118 ---------~~~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~ 186 (587)
+...+.+.++..|.+-.. ++...++..++..+.....+++.. .....+-+|..+|+|+--.||+.++.+
T Consensus 560 d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~S 639 (1529)
T KOG0413|consen 560 DFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADS 639 (1529)
T ss_pred hcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHH
Confidence 112345556666655555 667788999999888888888766 445558899999999999999999999
Q ss_pred HHHHHHhhcc-chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh-hhc------------------Chhhhhhc-----
Q 007842 187 LGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG-KLL------------------EPQDCVAH----- 241 (587)
Q Consensus 187 l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~-~~~------------------~~~~~~~~----- 241 (587)
|+.+...-+- -......+-.+..+++|.+..|...|...+..+. ..+ ....++..
T Consensus 640 ltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~~s~yl~~~~h~w 719 (1529)
T KOG0413|consen 640 LTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTNHSQYLMSTLHDW 719 (1529)
T ss_pred HHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987764211 1122333444555566665555555554332211 100 00000000
Q ss_pred -----hHHHHHHh--------ccCCcHHH-------------------------HHHHHHHHHHHHHHhCC--Ccc----
Q 007842 242 -----ILPVIVNF--------SQDKSWRV-------------------------RYMVANQLYELCEAVGP--EPT---- 277 (587)
Q Consensus 242 -----l~~~l~~~--------~~d~~~~v-------------------------R~~a~~~l~~~~~~~~~--~~~---- 277 (587)
.-+...+- ..|+.|-+ .....+.++.+...++. +..
T Consensus 720 ~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~~~l~s~~ 799 (1529)
T KOG0413|consen 720 VREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQYLIHIIENIKKIDDDLKSDL 799 (1529)
T ss_pred HHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHHHHHHHHHHHhhhhcccHHH
Confidence 00000000 00111211 11122344444333221 011
Q ss_pred ccchHHHHHHhcCCCh----HHHHHHHHHhHHHHHhhhCH--HHHH--------HhHhHHHHHhccCCcH-----HH-H-
Q 007842 278 RMDLVPAYVRLLRDNE----AEVRIAAAGKVTKFCRILNP--ELAI--------QHILPCVKELSSDSSQ-----HV-R- 336 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~--~~~~--------~~i~~~l~~~~~d~~~-----~v-r- 336 (587)
.+.+...+..+++.+. .++-..+...++..+.+-.+ +... ..+.+....+-....| .. |
T Consensus 800 vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s~~~~~~ 879 (1529)
T KOG0413|consen 800 VDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNSESQERL 879 (1529)
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcchhHHHH
Confidence 2234445554444332 33334444455544432111 0110 1122222211111111 11 1
Q ss_pred --HHHHHHHHccccccchhHHHHhHHHHHHHhhc----C-------------------------CChHHHHHHHHhhhhh
Q 007842 337 --SALASVIMGMAPLLGKDATIEQLLPIFLSLLK----D-------------------------EFPDVRLNIISKLDQV 385 (587)
Q Consensus 337 --~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----d-------------------------~~~~vr~~a~~~l~~l 385 (587)
....-+++.....++.. -..+.++++.+... | -.+-+|..+.-+++++
T Consensus 880 l~~~y~v~~~~~~ql~P~a-r~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakm 958 (1529)
T KOG0413|consen 880 LCTAYNVAFSYSPQLVPHA-RLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKM 958 (1529)
T ss_pred HHHHhhccccccceeccch-hccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHHHH
Confidence 11111222333333311 12222333322211 1 1245677777777777
Q ss_pred hhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842 386 NQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
+-.. +.+.+.++|.+.+-++ ...-.+|..++-+++.++-.... ..+..+|.+-..|.|++.-||..++..|..+.
T Consensus 959 cLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 959 CLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIVRRQTIILLARLL 1034 (1529)
T ss_pred Hhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 6443 3344668888876443 45567888777777776654421 23557888999999999999999999999998
Q ss_pred HHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHH
Q 007842 465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 520 (587)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~ 520 (587)
+.-=.. +...++=.++-.+-|.++.+|.-|=.+++.+.+.-.+..+...+...+.
T Consensus 1035 q~~~vK-w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1035 QFGIVK-WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred hhhhhh-cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 732122 2344444444456788999999999999999876555444444444433
No 106
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.45 E-value=3e-05 Score=69.74 Aligned_cols=189 Identities=10% Similarity=0.089 Sum_probs=125.8
Q ss_pred HHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHH--HhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHh
Q 007842 282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (587)
Q Consensus 282 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (587)
+..+..+++ ..++.+++.+..+++..+..-....+. -..++.+..++.++++.+|..|..++.+++.........+.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 455566665 456888888888888866543222221 24678888889999999999999998888766544333334
Q ss_pred HHHHHHHhh-cC-CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh--ChhhhH
Q 007842 359 LLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFD 434 (587)
Q Consensus 359 l~~~l~~~l-~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~--~~~~~~ 434 (587)
.++.+.+.. .+ .+.+++.++++.|..+.-.-.........+|.+..++...+..+|..+++.+..++..- ..+.+.
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~ 173 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS 173 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 444444432 22 36788888888888886544334444556788888888888888888888888877532 233333
Q ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhChH
Q 007842 435 DKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 435 ~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
....+.++.++..+ ..++...++..+.++...++.+
T Consensus 174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 44455566666554 6777888888888887766543
No 107
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.44 E-value=1.1e-06 Score=70.38 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=70.7
Q ss_pred hhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---
Q 007842 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--- 548 (587)
Q Consensus 475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--- 548 (587)
.+++.+.+++.++++.+|..++.+++.++..... ......++|.+.++++|+++.+|..++.+|++++...+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3566666777777777777777777777654211 1123367777777777777777777777777776543221
Q ss_pred HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 549 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.....+++.+.+++.+.+.++|..+..+|..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 223446777777777777778877777777665
No 108
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.44 E-value=2.2e-05 Score=70.54 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=123.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCC-Cc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc
Q 007842 252 DKSWRVRYMVANQLYELCEAVGP-EP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~~~~~~~~-~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 329 (587)
..++.++..+.-+++..+..-.. +. ..-..++.+..++.++++.+|..|+.++..++.........+..++.+.+.+.
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 45688888888888876542111 11 12257888999999999999999999999887765544333444555544322
Q ss_pred --CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--hhhHHhhHHHHHHHH
Q 007842 330 --DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVEL 405 (587)
Q Consensus 330 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~ 405 (587)
..+..++.++.+.|..+.............+|.+..++..++..+|..+++.|..++..-. .+-+....++.+..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence 2366889999999999975544444455678888999999999999999999998875432 333344556667776
Q ss_pred hcCC-ChHHHHHHHHHHHHHHHhhChh
Q 007842 406 AEDR-HWRVRLAIIEYIPLLASQLGVG 431 (587)
Q Consensus 406 ~~~~-~~~vR~~~~~~l~~l~~~~~~~ 431 (587)
+... +..+-..++..++.+.+.+.++
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 6654 5566666777777776666543
No 109
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00031 Score=62.94 Aligned_cols=318 Identities=13% Similarity=0.128 Sum_probs=184.9
Q ss_pred HHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc-------cccchHHHHHHhcCCChH
Q 007842 222 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLVPAYVRLLRDNEA 294 (587)
Q Consensus 222 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-------~~~~l~~~l~~~l~d~~~ 294 (587)
++.++..+.....+....+.+.|.+...+..++..|+..+++.++.+.+...... ....+++.+..++..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 5666666666555555667788888888888888888888888888887655321 123578888888999999
Q ss_pred HHHHHHHHhHHHHHhhhCH-H-HHHHhHhHHH--HHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhh
Q 007842 295 EVRIAAAGKVTKFCRILNP-E-LAIQHILPCV--KELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLL 367 (587)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~-~-~~~~~i~~~l--~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l 367 (587)
+|-++|.+.+..++..-.. + .|...+...+ .++....+.-+|.-..+.+..+.+..+. +....-++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 9999999999988764211 0 1111111111 1222233445666666666666554432 222344566666556
Q ss_pred cC-CChHHHHHHHHhhhhhhhhhchhhH--HhhHHHHHHHHhc----CCChHHHHHHHHHHHHHHHhhChhhhH------
Q 007842 368 KD-EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLGVGFFD------ 434 (587)
Q Consensus 368 ~d-~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~----~~~~~vR~~~~~~l~~l~~~~~~~~~~------ 434 (587)
+- ++.-|+...++-...+...-...++ .+.++..+.+++. |+....|.. ..+.+.+|++..+
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfral-----mgfgkffgkeaimdvseea 297 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRAL-----MGFGKFFGKEAIMDVSEEA 297 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH-----HHHHHHhcchHHhhcCHHH
Confidence 54 5567777777777776644322221 2455666666542 333344332 2223333332221
Q ss_pred --HH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC-hHHHhhh---hHHHHHhhccCCc-hhHHHHHHHHHHHhhc
Q 007842 435 --DK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-PEWAMQH---ITPQVLEMINNPH-YLYRMTILRAISLLAP 504 (587)
Q Consensus 435 --~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~---l~~~l~~~l~d~~-~~~R~~a~~~l~~l~~ 504 (587)
+. .+.-.+..+..+++....+|+.++|.+.+... .+...+. -..+++.-..|.+ ..-..+++.++..++.
T Consensus 298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 11 12223445567888899999999999876543 3322222 2223333333433 3456677888887764
Q ss_pred ccC--h-------H--HHHhh------------HHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 505 VMG--S-------E--ITCSR------------LLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 505 ~~~--~-------~--~~~~~------------il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
... + . ..... =+..+...++.|.+++|.++.+++..+...
T Consensus 378 elrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 378 ELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred cccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 321 1 1 01111 123455567889999999999999998754
No 110
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.41 E-value=3.3e-05 Score=66.20 Aligned_cols=92 Identities=16% Similarity=0.015 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchh
Q 007842 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 490 (587)
Q Consensus 411 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 490 (587)
+.+|..++.+++.++...+. ..+...|.+...+.|+++.||..|+.++..+... +.-...+.++..+...+.|+++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 44555555555555544331 2333455555556666666666666666555542 11112233444444555666666
Q ss_pred HHHHHHHHHHHhhcc
Q 007842 491 YRMTILRAISLLAPV 505 (587)
Q Consensus 491 ~R~~a~~~l~~l~~~ 505 (587)
+|..|..++..+...
T Consensus 79 Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 79 IRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666665554
No 111
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.39 E-value=4.6e-05 Score=65.36 Aligned_cols=109 Identities=21% Similarity=0.178 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 007842 216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE 295 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~ 295 (587)
+.+|..++.+++.++-..+. ..+...|.+...+.|+++.||+.|+..+..+... +.-.....++..+..++.|++++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 56777777777777766653 3455677777788888888888888888777653 11112234556667777888888
Q ss_pred HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHh
Q 007842 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 327 (587)
||..|...+..+....++..+...+.+.+..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 88888888888877655554434444444333
No 112
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00039 Score=65.99 Aligned_cols=249 Identities=16% Similarity=0.109 Sum_probs=136.2
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchH
Q 007842 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~ 282 (587)
.+..-..|++..+|..|+.+|+..+..++++ .....+..++..+.++.+..|...++.++..+.+..........++
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 3334456777788999999999988887763 2233344455556666778888888888888776655433333333
Q ss_pred H---HHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHH---HhccCCcHHHHHHHHHHHHccccccchh
Q 007842 283 P---AYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVK---ELSSDSSQHVRSALASVIMGMAPLLGKD 353 (587)
Q Consensus 283 ~---~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~---~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 353 (587)
+ -+..+.+|+++.+|.++...++.++...|. +.|.+.+...+. -.++|+++.+-.++-..+......++.+
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rk 421 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRK 421 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHH
Confidence 3 345567888899999999998888876653 233333332322 3357888888777666665555444433
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh---chhhHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHhhC
Q 007842 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~l~~l~~~~~~~~~-~vR~~~~~~l~~l~~~~~ 429 (587)
.. -..+.+.+ |.... |-.+... ..+..+ -++. .........-+++ ..| .+|.++...-+.+...+.
T Consensus 422 e~----~~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~~i~~d~-l~~~~t~~~~~f~-sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 422 EL----YHLFQESL-DTDMA-RFQAFYN--QWCIQLNHIHPDI-LMLLLTEDQHIFS-SSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred HH----HHHHhhhh-HHhHH-HHHHHHH--HHHHHHhhhCHHH-HHHHHHhchhhee-cchHHHHHHHHHHHHHHHHHhH
Confidence 21 22222222 22111 2111110 001111 0010 0111111111223 344 677776665555544443
Q ss_pred hhh----hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842 430 VGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (587)
Q Consensus 430 ~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
+.. ....+...+..+..|+-++|+..|..+++.+.
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 222 22334555556667777777777777776654
No 113
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.38 E-value=3.1e-06 Score=67.81 Aligned_cols=106 Identities=16% Similarity=0.074 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH--H-
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--I- 510 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~--~- 510 (587)
+++.+...+.+.++.+|..++.+++.++... ...+....++|.+.+++.++++.+|..++.++++++...+.. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5677777888888999999999999988642 222334578999999999999999999999999998754321 1
Q ss_pred HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 511 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
....+++.+.+.+++++..+|..++.++.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23457899999999999999999999998875
No 114
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0066 Score=67.28 Aligned_cols=285 Identities=16% Similarity=0.143 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc-CCCCcchhhHHhh---------hHhhcC-----CCCh-HHHHHH
Q 007842 101 CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGL---------FHIAYP-----SAPD-ILKTEL 164 (587)
Q Consensus 101 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~---------l~~~~~-----~~~~-~~~~~l 164 (587)
.+-+.|+.-++.++.+.+++.- ..++..+..... ....+.+.....+ +..+.. .+.+ .++..-
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~-~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~ 877 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIR-LSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSA 877 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHH-HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHH
Confidence 5778888888888888877643 333333333322 2222111111111 111111 2233 366777
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHH-HHHHhhhCCchhHHHHHHHHHHHHhhhcCh---hhhhh
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS-IFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVA 240 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~ 240 (587)
+.++...+..++|..|-++.++++.++...+...+...+.. .+.++.+-.++..|..-.-+++.+-+..+. .....
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 77888888899999999999999999999887665555444 455555556666677777777777776554 33444
Q ss_pred chHHHHHHhccCCcH-HHHHHHHHHHHHHHHHhCCCccccc---hHHHHHH-hcCCC--hHHHHHHHHHhHH------HH
Q 007842 241 HILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEPTRMD---LVPAYVR-LLRDN--EAEVRIAAAGKVT------KF 307 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~-~l~d~--~~~vr~~a~~~l~------~l 307 (587)
..+..+..+.+|++. .|+..++.++..+....++.. ... .+..... ++.++ ..+++...-+.+. .+
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~al 1036 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDAL 1036 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHH
Confidence 455678888888765 999999999988876655432 111 1222222 33443 3556555555554 56
Q ss_pred HhhhCHHH-----------HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHH
Q 007842 308 CRILNPEL-----------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 376 (587)
Q Consensus 308 ~~~~~~~~-----------~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 376 (587)
....|++. +....+-...-++..+++-+..++++++.++.-.-++....+.+++.+..++....--.|.
T Consensus 1037 ittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~ 1116 (2067)
T KOG1822|consen 1037 ITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRR 1116 (2067)
T ss_pred HHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhh
Confidence 65555431 0011111112233456788999999998888766666666788899999888887767777
Q ss_pred HHHHhhhhhhh
Q 007842 377 NIISKLDQVNQ 387 (587)
Q Consensus 377 ~a~~~l~~l~~ 387 (587)
..+.++..+..
T Consensus 1117 ~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1117 ASFSCLRQLVQ 1127 (2067)
T ss_pred hHHhhhhHHhH
Confidence 77777776654
No 115
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.00025 Score=70.15 Aligned_cols=161 Identities=19% Similarity=0.162 Sum_probs=67.4
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHH
Q 007842 285 YVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 362 (587)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 362 (587)
+++....++..||..++..+..+....+ ++...+.+...+...+.|..+.||..|..+|+.+-..-+.+.+ .+...
T Consensus 90 lLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--~v~n~ 167 (892)
T KOG2025|consen 90 LLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--PVVNL 167 (892)
T ss_pred HHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc--cHHHH
Confidence 3333444455555555555555444211 1223344444444445555555555555555554422111111 11222
Q ss_pred HHHhh-cCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH-HHHHHhhChhhhHHHHHHH
Q 007842 363 FLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI-PLLASQLGVGFFDDKLGAL 440 (587)
Q Consensus 363 l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l-~~l~~~~~~~~~~~~l~~~ 440 (587)
+..++ +|++++||.+++..+..= ..-+|.+.+...|-+..+|..+.+-+ ..+ . +... -.+.-+-+
T Consensus 168 l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d-~r~l-si~krv~L 234 (892)
T KOG2025|consen 168 LKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-D-LRSL-SIDKRVLL 234 (892)
T ss_pred HHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-h-hhhh-hHHHHHHH
Confidence 22222 345555555555544321 22344455555555555554443322 111 0 0000 01123344
Q ss_pred HHHhcCCCchHHHHHHHHHH
Q 007842 441 CMQWLQDKVYSIRDAAANNL 460 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l 460 (587)
+.+.+.|.+..||.++...+
T Consensus 235 lewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 235 LEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred HHHhhhhhhhHHHHHHHHHH
Confidence 44555555555555555443
No 116
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.00026 Score=69.97 Aligned_cols=206 Identities=15% Similarity=0.081 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
+....++..+......++-.||..+++.+..+....+. +.+.+.+..-+..-+.|..+.||..|+.+|..+-..-.++
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 36777788888888899999999999999999885432 4455666666667778999999999999998876422222
Q ss_pred hhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHh-HHHHHhhhCHH
Q 007842 237 DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK-VTKFCRILNPE 314 (587)
Q Consensus 237 ~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~~ 314 (587)
.-.+..++..++ +|++++||+++...+.. .+.-+|.++....|-+..+|+.+-.. +..+ .....
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~l- 226 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSL- 226 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhh-
Confidence 223455555544 58999999999887642 34567888888888877777665443 3333 21111
Q ss_pred HHHHhHhHHHHHhccCCcHHHHHHHHHHHHc-cccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842 315 LAIQHILPCVKELSSDSSQHVRSALASVIMG-MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 315 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
. ..+-+..+...+.|.+..||.++..++-. +.... ...++..+..+=-+.+.+|+..+++++-.
T Consensus 227 s-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 227 S-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred h-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 12344556677788888888888776532 11111 01222333333233344666666666555
No 117
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00011 Score=74.17 Aligned_cols=178 Identities=20% Similarity=0.174 Sum_probs=128.2
Q ss_pred HHhccCCcHHHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHH
Q 007842 325 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (587)
Q Consensus 325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l 402 (587)
...+.|+...+|..+...+..+.+...+ -...+.++.+....++|.++.|-.++++.+..++..+. +.++|.+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL 807 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDL 807 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHH
Confidence 3445677778888888888888764422 22456788899999999999999999998888887754 4567776
Q ss_pred HHHhcC----CChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---hHHHh
Q 007842 403 VELAED----RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAM 473 (587)
Q Consensus 403 ~~~~~~----~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~ 473 (587)
.+...+ ...+.|..+-+++..+++..|.=. +...++..++....|++..-|..++..+|.+++... .+++.
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 663321 224556666688888888877432 345677788888899998999999999999998553 34443
Q ss_pred hhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccCh
Q 007842 474 QHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 474 ~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
+ ....+.. .-.|....+|.+|+..+..+....|.
T Consensus 888 e-v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 888 E-VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred H-HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 3 3333333 34577888999999999998887774
No 118
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00025 Score=61.64 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=107.6
Q ss_pred HHHHHHHhhhCC--chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH--hCCC---
Q 007842 203 IMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA--VGPE--- 275 (587)
Q Consensus 203 l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~--~~~~--- 275 (587)
-+|.+...+.|+ .+.||..|.++|++++. +...+++.+..+|+-..||..+..++..+-.. .+..
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccccc
Confidence 345555555444 46777777777777652 34566666666777777777666666554321 1110
Q ss_pred -------cccc-c--hHHHHHHhcCCCh-HH-HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHH
Q 007842 276 -------PTRM-D--LVPAYVRLLRDNE-AE-VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVI 343 (587)
Q Consensus 276 -------~~~~-~--l~~~l~~~l~d~~-~~-vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l 343 (587)
..+. . -+.-+...+.|.+ +. -|..++..|..++ . +..+..+...+.+.+.-.|..++..+
T Consensus 140 ~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----~----EeaI~al~~~l~~~SalfrhEvAfVf 211 (289)
T KOG0567|consen 140 SPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----T----EEAINALIDGLADDSALFRHEVAFVF 211 (289)
T ss_pred CccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----c----HHHHHHHHHhcccchHHHHHHHHHHH
Confidence 0000 0 1222222222322 22 2333333333322 1 22245556666666777888888887
Q ss_pred HccccccchhHHHHhHHHHHHHhhcC--CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007842 344 MGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (587)
Q Consensus 344 ~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l 421 (587)
+++.+ +.-+|.+.+.|.| +++-||-.++.+|+.++. +..++.+.++++|+..-+|..+.-++
T Consensus 212 GQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 212 GQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred hhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77753 2345666666554 356788888888877765 45677777778888888887777666
Q ss_pred HHHH
Q 007842 422 PLLA 425 (587)
Q Consensus 422 ~~l~ 425 (587)
...-
T Consensus 276 dm~e 279 (289)
T KOG0567|consen 276 DMLE 279 (289)
T ss_pred HHHH
Confidence 6543
No 119
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.29 E-value=0.00063 Score=68.68 Aligned_cols=407 Identities=12% Similarity=0.076 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcChhh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD 237 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
..+.+++.+..-+.+++..||..+.+.+.++-..+.. ..+.=-+-.++.++.+.+ ...||.-++--+..=.+.++.++
T Consensus 20 ~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e 99 (501)
T PF13001_consen 20 VLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEE 99 (501)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHH
Confidence 3344555555556677899999999999999998876 333333445555555555 57888887766665556666553
Q ss_pred hhhchHHHHHHhccCCc---HHHHHHHHHHHHHHHHHhCCCccccc-----hHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842 238 CVAHILPVIVNFSQDKS---WRVRYMVANQLYELCEAVGPEPTRMD-----LVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~---~~vR~~a~~~l~~~~~~~~~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
...++|.+.+.++... .......+..+..+++.......+.. .-+.-...+.|. ........-...+..
T Consensus 100 -~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~ 176 (501)
T PF13001_consen 100 -RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLL 176 (501)
T ss_pred -HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhccccc
Confidence 4567777777665321 12222233333333333221110000 000000011110 000000000000000
Q ss_pred hh--C---HHHHHHhHhHHHH-----Hhcc------C--CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC
Q 007842 310 IL--N---PELAIQHILPCVK-----ELSS------D--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF 371 (587)
Q Consensus 310 ~~--~---~~~~~~~i~~~l~-----~~~~------d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 371 (587)
.. . .......-.|.+. .... + .-.++|..+++.+..-. ++. +..++.++-.-.|.+
T Consensus 177 l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~d----~~~~~~~liAsad~~ 250 (501)
T PF13001_consen 177 LQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FPD----EERFPPLLIASADSN 250 (501)
T ss_pred cccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CCc----HhHHhheeeEEeCCc
Confidence 00 0 0000000001110 0000 1 11245555555543322 111 123344444457778
Q ss_pred hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHH--HHhc-----CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh
Q 007842 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELAE-----DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (587)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~--~~~~-----~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 444 (587)
.+|...+-..|.++...+....+.+.++..+. ..-. --++.+|..++..+.. ........+.++.++...
T Consensus 251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDG 327 (501)
T ss_pred chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhcc
Confidence 88999999999888877666555555555444 1111 1256677766665544 322222234566677777
Q ss_pred cCCC--chHHHHHHHHHH---HHHHHHhChHHH---hhhhHHHHHhhcc--------CCchhHHHHHHHHHHHhhcccCh
Q 007842 445 LQDK--VYSIRDAAANNL---KRLAEEFGPEWA---MQHITPQVLEMIN--------NPHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 445 l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~l~~~l~~~l~--------d~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
+.+. +..+|..++..+ .......+.... .+.+...+...+. ..+...|..+.++||.++.....
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~ 407 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS 407 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence 7766 778899999998 777776665432 2333333333332 23578999999999999986654
Q ss_pred HHH-HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH-----HhhHHH-HHHHhcCCCCccHHHHHHHHHH
Q 007842 509 EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRP-CLVELTEDPDVDVRFFATQAIQ 578 (587)
Q Consensus 509 ~~~-~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~-~l~~l~~d~d~~Vr~~a~~al~ 578 (587)
-+. .-.++..+.+.+.++.+++|.++-++|..+...+....- ...... .+.....+....+|+.|.+=..
T Consensus 408 l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an 484 (501)
T PF13001_consen 408 LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN 484 (501)
T ss_pred cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 321 134566777777899999999999999999987754211 112222 2222445666778887776433
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.28 E-value=0.0011 Score=65.80 Aligned_cols=270 Identities=17% Similarity=0.159 Sum_probs=146.1
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHH
Q 007842 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (587)
Q Consensus 166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 245 (587)
..++.... .+..+++.+++.+..+.+.+ +...+..+..+..++.|++..||..|+..|..++..-+ ...+.+..+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~F--P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDv 100 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHF--PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADV 100 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHH
Confidence 33444444 35899999999999999987 45667788888899999999999999999998876533 256788999
Q ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--CCChHHHHHHHHHhHHHHHhhhCH------HHHH
Q 007842 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAEVRIAAAGKVTKFCRILNP------ELAI 317 (587)
Q Consensus 246 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~------~~~~ 317 (587)
|.++++.+++..+..+-++|..+...-+ ...+-..+.... ...+..+|.-+++.+..-...++. +...
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 9999998888777777777777665311 112333333333 245678999988877654443332 2344
Q ss_pred HhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhc------CCChHHHHHHHHh----hhhh
Q 007842 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK------DEFPDVRLNIISK----LDQV 385 (587)
Q Consensus 318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~----l~~l 385 (587)
..+...+.+.+.|-...-=..+...|..+-.+-+ ...-...+++++..... -.+++.-...+.+ +.-+
T Consensus 177 ~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~f 256 (556)
T PF05918_consen 177 EFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFF 256 (556)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHh
Confidence 5567777888888544333333444444433111 12223456666664331 1223333333333 3333
Q ss_pred hhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842 386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
........+...+...+...+.+-....|..+++.+..++...+... ...++|.++..|
T Consensus 257 s~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 257 SRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 33333333333322222222233344667778888888888777544 445556665555
No 121
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.0029 Score=56.93 Aligned_cols=345 Identities=17% Similarity=0.195 Sum_probs=167.3
Q ss_pred HHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-------hhhhchHHHHHHhccCCcH
Q 007842 183 AASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-------DCVAHILPVIVNFSQDKSW 255 (587)
Q Consensus 183 ~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~~~~d~~~ 255 (587)
+...|..+.+.-.+....+.++|.+...+..++..|+..+++.++.+.+.+... .....+.+.+..++..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 444455555544444455666666666666666667777776666666655421 1133466666666666777
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC----------ChHHHHHHHHHhHHHHHhhhCHH----HHHHhHh
Q 007842 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD----------NEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 321 (587)
Q Consensus 256 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d----------~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~ 321 (587)
.|-.+|.+.+..++..- ..+--+|..-+.| -+.-+|......+-.+... .++ -....++
T Consensus 143 eVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLl 215 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLL 215 (524)
T ss_pred HHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHH
Confidence 77777777777665421 1111111111111 1222333333333333221 111 1112234
Q ss_pred HHHHH-hccCCcHHHHHHHHHHHHccccccchhHH--HHhHHHHHHHhhc--CCChHHHHHHHHhhhhhhhhhchhhHH-
Q 007842 322 PCVKE-LSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLS- 395 (587)
Q Consensus 322 ~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~- 395 (587)
..+.. +-..++.-|+..+++....++..-....+ .+-++..+.+.+. |.+|.-+..+ +..+.+.+|++.+.
T Consensus 216 dlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra---lmgfgkffgkeaimd 292 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA---LMGFGKFFGKEAIMD 292 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH---HHHHHHHhcchHHhh
Confidence 44433 33335666777777776666543321111 2223444444433 2233222222 23333333332211
Q ss_pred -------h---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-ChhhhHH----HHHHHHHHhcCCCchHHHHHHHHHH
Q 007842 396 -------Q---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDD----KLGALCMQWLQDKVYSIRDAAANNL 460 (587)
Q Consensus 396 -------~---~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-~~~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l 460 (587)
+ ..+.-..+.++..++....+++.+++.+.... |.+...+ ..-..+......+...-+.+++++|
T Consensus 293 vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaL 372 (524)
T KOG4413|consen 293 VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHAL 372 (524)
T ss_pred cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHH
Confidence 1 11222234556677888888888888876543 2222211 1112222233333334456778888
Q ss_pred HHHHHHhC--hH--------------HHh-----hhh--HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH-
Q 007842 461 KRLAEEFG--PE--------------WAM-----QHI--TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL- 516 (587)
Q Consensus 461 ~~l~~~~~--~~--------------~~~-----~~l--~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il- 516 (587)
..+...+. ++ ||. ..+ +..+...++.|.+.+|.++++.+..++.. .|....++
T Consensus 373 aaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq---PWalkeifa 449 (524)
T KOG4413|consen 373 AAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ---PWALKEIFA 449 (524)
T ss_pred HHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC---cHHHHHHhc
Confidence 87765321 11 111 111 22334456778899999999999998753 23322222
Q ss_pred -HHHHhhcCCCCh-------hHHHHHHHHHHH
Q 007842 517 -PVVINASKDRVP-------NIKFNVAKVLQS 540 (587)
Q Consensus 517 -~~l~~~l~d~~~-------~vR~~~~~~l~~ 540 (587)
|.++....|.+. ..|..+++++.+
T Consensus 450 keefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 450 KEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred CccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 344444455433 456666666654
No 122
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.0024 Score=64.79 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=129.6
Q ss_pred hHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh----HHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChH--
Q 007842 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-- 159 (587)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-- 159 (587)
+-.+|+.+-...|+.....|+.-|.++.....++. -.+.++|.+..+.+++ ++.....||..+.++++.+++.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44455555555588777776666666543333322 2567899999999887 7788888999999998888764
Q ss_pred --HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842 160 --LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (587)
Q Consensus 160 --~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
.....+|.|. .+..-.--.|.+.+++++..+....+......--+..+..+++--.-.+++.|+.+...++..+.++
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3345777766 4555566789999999999998876543332222222222222223356777888888888887764
Q ss_pred h--hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC
Q 007842 237 D--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274 (587)
Q Consensus 237 ~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~ 274 (587)
. +.-+.+|++..+++..+.++-..++-++..++..+..
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 2 4556799999999988888888889999998887654
No 123
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.25 E-value=0.0066 Score=60.36 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=106.5
Q ss_pred HHHHHHHHHhcCC----CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc-cCCchhHHHHHHHHHHHhhcccChH
Q 007842 435 DKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSE 509 (587)
Q Consensus 435 ~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~~R~~a~~~l~~l~~~~~~~ 509 (587)
..+.|+......+ .++.++.+|.-+|..+.- +..+ |...-+|.+...+ +.|++.+|..|+-.+|.+.-.+..
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~-fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~- 967 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFE-FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT- 967 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh-
Confidence 4455666655555 788899999988888764 2333 3345578877765 489999999999999998876554
Q ss_pred HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 510 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+.++....+.+.+.|.+..||.+++.++..++-.-. .-...-++.+..++.|+|..+...|..-+-++++
T Consensus 968 -~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq--~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 -TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ--LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred -hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc--eeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 457788899999999999999999999988765321 1112336777888999999999988887777664
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0015 Score=66.27 Aligned_cols=188 Identities=12% Similarity=0.118 Sum_probs=122.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc----hhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcChh-
Q 007842 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ- 236 (587)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~- 236 (587)
.+-.+|..+-...++..+..++.-+......-.++ .-.+.+.|.+..+++++ +.++-..|+.++..+++.+|+.
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 34444444444445666555544444433332222 23466888899998887 5788889999999999998873
Q ss_pred --hhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842 237 --DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (587)
Q Consensus 237 --~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
......+|.+..-+ .=.--.|-+.+++++..+...-+.......-+-..+.+++=-.-.+++.|+......+..+..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12344677665533 334456888888888888775443322222233333333333456777888888888888776
Q ss_pred H--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 007842 314 E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (587)
Q Consensus 314 ~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 350 (587)
+ .+.-+.+|.+..+++..+.++-..++-++..++..+
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 5 345678899999999888888888888888887766
No 125
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.23 E-value=0.0017 Score=65.55 Aligned_cols=406 Identities=13% Similarity=0.070 Sum_probs=212.2
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-hhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHHHHHH
Q 007842 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELR 165 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l~ 165 (587)
.|+|.++ .+++..||+..++.+..+-+.+.. ..+.=-+..++..+.+.+ ...+|..+.--+...+++++.+.+..++
T Consensus 26 ~plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~ll 104 (501)
T PF13001_consen 26 PPLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRELL 104 (501)
T ss_pred HHHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 3444444 466778888888888888776654 222222333444444444 4566777776667778888888888888
Q ss_pred HHHHHhcCCCChH---HHHHHHHhHHHHHHhhccchh----hhHHHHHH-HHhhhCCchhHHHHHHHHHHHHh-------
Q 007842 166 SIYTQLCQDDMPM---VRRSAASNLGKFAATVEPAHL----KTDIMSIF-EDLTQDDQDSVRLLAVEGCAALG------- 230 (587)
Q Consensus 166 ~~l~~l~~d~~~~---vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l-~~l~~d~~~~vr~~a~~~l~~l~------- 230 (587)
|.+.+.+...... .....+..+..+++....... .+.....- ...+.|.... .....-.....
T Consensus 105 P~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~l~~~~~ 182 (501)
T PF13001_consen 105 PSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDD--VFLAPWFSKFLLLQPNRA 182 (501)
T ss_pred HHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHH--HHcchhhccccccccccc
Confidence 8888877643211 111222222222222211000 00000000 0000000000 00000000000
Q ss_pred hhcCh--hhhhhchHH-HHHHhccC--------CcHHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHH
Q 007842 231 KLLEP--QDCVAHILP-VIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRI 298 (587)
Q Consensus 231 ~~~~~--~~~~~~l~~-~l~~~~~d--------~~~~vR~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~ 298 (587)
..++. ....+.+.. -....... .-.++|...++.+.. ... ....++.++-...|.+.+|..
T Consensus 183 ~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~s-------g~f~d~~~~~~~liAsad~~~~V~~ 255 (501)
T PF13001_consen 183 YACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLAS-------GFFPDEERFPPLLIASADSNSSVSD 255 (501)
T ss_pred cCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh-------cCCCcHhHHhheeeEEeCCcchHHH
Confidence 00000 000000000 01111110 112344444444432 222 225566666666888889998
Q ss_pred HHHHhHHHHHhhhCHHHHHHhHhHHHH--Hhcc-----CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC-
Q 007842 299 AAAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE- 370 (587)
Q Consensus 299 ~a~~~l~~l~~~~~~~~~~~~i~~~l~--~~~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~- 370 (587)
.+-..|.++...++...+...++..+. .... -.++.+|......|.+-... ....+.++.++...+.+.
T Consensus 256 ~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A---a~~~~~~~~i~~~~l~~~~ 332 (501)
T PF13001_consen 256 RAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA---ATSFPNILQIVFDGLYSDN 332 (501)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH---HhCCccHHHHHhccccCCc
Confidence 888888888777666666555555555 2111 13567777777666542111 111234455566666666
Q ss_pred -ChHHHHHHHHhh---hhhhhhhchhhHHhhHHHHHH----HHhc--------CCChHHHHHHHHHHHHHHHhhChhhh-
Q 007842 371 -FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIV----ELAE--------DRHWRVRLAIIEYIPLLASQLGVGFF- 433 (587)
Q Consensus 371 -~~~vr~~a~~~l---~~l~~~~~~~~~~~~~l~~l~----~~~~--------~~~~~vR~~~~~~l~~l~~~~~~~~~- 433 (587)
+..+|..+++.+ .......+...+ ..+-|.+. ..+. ..+...|..+++++|.+++....-+.
T Consensus 333 ~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~ 411 (501)
T PF13001_consen 333 TNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK 411 (501)
T ss_pred cccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccc
Confidence 567888888887 666665554432 22222222 2231 24567899999999999987643221
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH-----hhhhHHHH-HhhccCCchhHHHHHHHHHHHhhcccC
Q 007842 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQV-LEMINNPHYLYRMTILRAISLLAPVMG 507 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l-~~~l~d~~~~~R~~a~~~l~~l~~~~~ 507 (587)
.-.++..++..+.++..++|.+.-++|+.+...+....- ....+..+ .....+....+|.+|++....+.+.-.
T Consensus 412 d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 412 DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCccc
Confidence 124667777788999999999999999999987754211 11112222 223345567799999998888876433
No 126
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.18 E-value=0.012 Score=60.45 Aligned_cols=500 Identities=13% Similarity=0.118 Sum_probs=251.1
Q ss_pred hhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcc--hhhHHHHHHHHHHHHHHhhcChhhHHhh
Q 007842 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV--EETCVRDKAVESLCRIGSQMRESDLVDW 125 (587)
Q Consensus 48 ~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 125 (587)
.++..+....+.+..+|..+...+..+-... . +...|.....+ ..-..|+.|.-.|.+..+..-....+..
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~---~----f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLELTE---G----FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhccccch---H----HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 4555666666777777777666665553211 1 22223333322 3445677777666665543321111100
Q ss_pred HHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHH
Q 007842 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 205 (587)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 205 (587)
.-....+++.+..+.+.+.+++.+++..+|.+++.++..++..-- ++-++.++|
T Consensus 78 -------------------------r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~-Pd~WpElv~ 131 (1005)
T KOG2274|consen 78 -------------------------RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDY-PDEWPELVP 131 (1005)
T ss_pred -------------------------cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccC-chhhHHHHH
Confidence 000113345777888888888889999999999999998887653 455688899
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh---hhchHHHH---HHhccCCcHHHHHHHHH--HHHHHHHH---hCC
Q 007842 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVI---VNFSQDKSWRVRYMVAN--QLYELCEA---VGP 274 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l---~~~~~d~~~~vR~~a~~--~l~~~~~~---~~~ 274 (587)
.+.+++.+.+..--..|.++|..+.+....+.. .+...+.+ ..+....+...|..++. .+...... .++
T Consensus 132 ~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e 211 (1005)
T KOG2274|consen 132 FILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEE 211 (1005)
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHH
Confidence 999888887776677788888877765532211 11112222 22333344444444442 22222111 111
Q ss_pred C------ccccchHHHHHHhc------CC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhH----HHHHhc-------
Q 007842 275 E------PTRMDLVPAYVRLL------RD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILP----CVKELS------- 328 (587)
Q Consensus 275 ~------~~~~~l~~~l~~~l------~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~----~l~~~~------- 328 (587)
. .....+++.+...+ .+ .++..|...++++..+.+.++.- .+....++ .+.+.+
T Consensus 212 ~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~ 291 (1005)
T KOG2274|consen 212 VWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRES 291 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhh
Confidence 0 00112233332222 12 34677877788777777655421 11111111 111110
Q ss_pred -----------cCCcHH---HHHHHHHHHHccccccchhHH-------HHhHHHHHH------------------HhhcC
Q 007842 329 -----------SDSSQH---VRSALASVIMGMAPLLGKDAT-------IEQLLPIFL------------------SLLKD 369 (587)
Q Consensus 329 -----------~d~~~~---vr~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~------------------~~l~d 369 (587)
.|+++. +....+..+.-+...+....+ ...+++.+. .+..|
T Consensus 292 V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~d 371 (1005)
T KOG2274|consen 292 VNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVAD 371 (1005)
T ss_pred ccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhcc
Confidence 111211 111111111111111100000 001111111 11122
Q ss_pred CC--hHHHHHHHHhhhhhhhhhchhhHHhhHHHH----HHH------HhcCCChHHHHHHHHHHHHHHHhhChhhhHHHH
Q 007842 370 EF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPA----IVE------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (587)
Q Consensus 370 ~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~----l~~------~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 437 (587)
++ ..+|-.+...+-.+...+|.+... .+... +.. +.+...|....+.....+.+...-..+.....+
T Consensus 372 Ed~~~~~~~~~rd~~~~v~~~f~~~~i~-~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l 450 (1005)
T KOG2274|consen 372 EDDGYTARISVRDLLLEVITTFGNEGIN-PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIEL 450 (1005)
T ss_pred CCCCchhhhhHHHHHHHHHHhccchhhh-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHH
Confidence 22 234444545555555555543221 11111 111 123345666666655555444221122222333
Q ss_pred HHHHHHhc-CCCchHHHHHHHHHHHHHHHH--hChHHHhhhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842 438 GALCMQWL-QDKVYSIRDAAANNLKRLAEE--FGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCS 513 (587)
Q Consensus 438 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~ 513 (587)
...+.+.+ ....+..-..+.-+++.+... ..+.. ...++..... ...|..+.+|..|+.++...++..--..+.+
T Consensus 451 ~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p 529 (1005)
T KOG2274|consen 451 TIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQP 529 (1005)
T ss_pred HHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccch
Confidence 33334443 234455545677777766654 23332 2333333333 3456667799999998887774322223467
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHH--hcCCCCccHHHHHHHHHHHHHH
Q 007842 514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE--LTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~--l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.++..+..+..+.+.++-...+++|+.+++.-+.. ...+.+.|.... +....||.|-..+...++.+.+
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q 602 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ 602 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 78888888888889999999999999988653332 234567776666 3445566887777777777665
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.14 E-value=0.0019 Score=60.56 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=133.2
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhhh-chh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhhhHH
Q 007842 364 LSLLKDEFPDVRLNIISKLDQVNQVI-GID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDD 435 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~ 435 (587)
+..+.+.....|..++..+..+.... -.+ .....+++.+...++....+-+..++.+++.++-.+| .+.+.+
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 34445566778888877777665321 111 1234566677776766665667777788888877765 334556
Q ss_pred HHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHhChHH-Hhh---hhHHHHHhh--cc-C---------CchhHHHHHHH
Q 007842 436 KLGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW-AMQ---HITPQVLEM--IN-N---------PHYLYRMTILR 497 (587)
Q Consensus 436 ~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~---~l~~~l~~~--l~-d---------~~~~~R~~a~~ 497 (587)
.+.|.|...+.|.. ..+|.+++.+|+.+.-..+.+. -.. ..+..++.. .+ + ++..+..+|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 68888888887765 4577788888887765443321 112 122211111 11 1 23579999999
Q ss_pred HHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH------HHHhhHHHHHHHhcCCC
Q 007842 498 AISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDP 565 (587)
Q Consensus 498 ~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~------~~~~~i~~~l~~l~~d~ 565 (587)
+.+-+...++... .....+|.+..++..++.+||.+|-++|..+.+..... ...+.+...+.+|.+|.
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 9999988777632 35668899999999999999999999999988765431 23456788888887765
No 128
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.13 E-value=0.015 Score=59.88 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=117.3
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh---HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh-
Q 007842 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP- 469 (587)
Q Consensus 394 ~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 469 (587)
+...+.|.+.+.+.......|-.....+..+...++.... .+.+.|++++.+.=++..||..+..++..+....+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 3356788888877766667788888888888877765443 467899999999999999999999999888765443
Q ss_pred -HHHhhhhHHHHHhhccCCc---hhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 470 -EWAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 470 -~~~~~~l~~~l~~~l~d~~---~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
....+.++|.+..+-.|.+ -.+|..|+++++.+....+... +.+.++..+.+.+.|+..-||..|+.+=..+.
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 2245788999988877765 5799999999999988665543 56788999999999999999999988766543
No 129
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0004 Score=70.30 Aligned_cols=187 Identities=16% Similarity=0.219 Sum_probs=133.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (587)
+.-....++|+.+.+|-++...+..+++.-.+ -.....++.+...++.|+++.|...+++++..+++..++. ..+.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-il~dL 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-ILPDL 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-hHHHH
Confidence 44445567888899999999999999884322 2345668888999999999999999999999998875432 33333
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHH
Q 007842 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQ 318 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~ 318 (587)
.......-+...+..|...-+++++++...|+-. +...++..++....|++...|..++.+++.++.... -..+..
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 3333333222324555556688888888887632 334688889999999999999999999999887653 122445
Q ss_pred hHhHHHHHh-ccCCcHHHHHHHHHHHHccccccch
Q 007842 319 HILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGK 352 (587)
Q Consensus 319 ~i~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
++...+... ..|.+..+|++|+..+..+-...|.
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 555555443 3588899999999998887665553
No 130
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.08 E-value=0.00067 Score=64.03 Aligned_cols=188 Identities=16% Similarity=0.089 Sum_probs=122.5
Q ss_pred hHhHHHHHhccCCcHHHHHHHHHHHHcc-ccc-cc-hhHHHHhHHHHHHHhhcC-CChHHHHHHHHhhhhhhhhhchh--
Q 007842 319 HILPCVKELSSDSSQHVRSALASVIMGM-APL-LG-KDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGID-- 392 (587)
Q Consensus 319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l-~~~-~~-~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-- 392 (587)
.+...+.++-.+....-|..+..-+..+ +.. ++ .+.+...++-.++..+.| .++..|.-|++.|..++..-...
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 3444445555554555566665544433 221 22 355566777788888888 67888889999999988754322
Q ss_pred hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (587)
Q Consensus 393 ~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 472 (587)
...+..+-.+.+...|.+..+-..+.+....+....-+..-...+.|.++. .+...-.++++.+.++++.+..+..
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence 122344445555667776665555555554444443333323334554443 4555566788888999888877753
Q ss_pred ---hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842 473 ---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (587)
Q Consensus 473 ---~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~ 510 (587)
.+.+.|.+++...+.+..+|.+++.||..+...+|.+.
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~ 483 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE 483 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh
Confidence 47889999999999999999999999999999998643
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.07 E-value=0.0013 Score=61.59 Aligned_cols=181 Identities=21% Similarity=0.210 Sum_probs=126.2
Q ss_pred HHhcCCChHHHHHHHHHHHHHHH-hhChhhh---HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC----hHHHhhh
Q 007842 404 ELAEDRHWRVRLAIIEYIPLLAS-QLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQH 475 (587)
Q Consensus 404 ~~~~~~~~~vR~~~~~~l~~l~~-~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 475 (587)
+.+.++....|..++..+-.+.. .+-.+++ ...+.+.+.+.++-....-+..|+++++-++-.+| .+.+.+.
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 34567778999999888766653 3334433 34567777787877666777788899999888766 2335567
Q ss_pred hHHHHHhhccCCc--hhHHHHHHHHHHHhhcccChHH-HHh---hHHHHHHh--hc-CC---------CChhHHHHHHHH
Q 007842 476 ITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI-TCS---RLLPVVIN--AS-KD---------RVPNIKFNVAKV 537 (587)
Q Consensus 476 l~~~l~~~l~d~~--~~~R~~a~~~l~~l~~~~~~~~-~~~---~il~~l~~--~l-~d---------~~~~vR~~~~~~ 537 (587)
+.|.|...+.|+. ...|..++.+++-+.-..+.+. -.. ..+..+.. .. .| +++.+..+++.+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 8899988888764 5688888888887754333221 122 23332211 11 11 246799999999
Q ss_pred HHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842 538 LQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 538 l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
.+.+...++.. ......+|.|..++..+|.+||.+|..++.-|.+..
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999887763 334567889999999999999999999999887654
No 132
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.0037 Score=68.30 Aligned_cols=326 Identities=13% Similarity=0.108 Sum_probs=173.3
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhhcChh------h---HHhhHHHHHHHHhc--CCCCcchhhHHhhh-----HhhcCCC
Q 007842 93 TLCTVEETCVRDKAVESLCRIGSQMRES------D---LVDWYIPLVKRLAA--GEWFTARVSACGLF-----HIAYPSA 156 (587)
Q Consensus 93 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~------~---~~~~l~~~l~~l~~--~~~~~~r~~a~~~l-----~~~~~~~ 156 (587)
.++.++|..||--...|+..+.+-+.|+ + +...++..+..+.+ ++++..+..-...+ ..++..-
T Consensus 57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~ 136 (1266)
T KOG1525|consen 57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLE 136 (1266)
T ss_pred HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeecc
Confidence 3567899999999999999998877552 1 22222222333332 22444333322222 2222222
Q ss_pred C-hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHH-HHhh---hCCchhHHHHHHHHHHHHhh
Q 007842 157 P-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF-EDLT---QDDQDSVRLLAVEGCAALGK 231 (587)
Q Consensus 157 ~-~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l-~~l~---~d~~~~vr~~a~~~l~~l~~ 231 (587)
+ .+...+++.++..+..++.+.--......+..+.... +.+...++.++ .++. .+....-+..|-..+..++.
T Consensus 137 d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~ 214 (1266)
T KOG1525|consen 137 DCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD 214 (1266)
T ss_pred chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence 2 3467788888888887776554444444444444443 23333344333 2333 33444445555555555554
Q ss_pred hcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 007842 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 232 ~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
.+.+. ..+.+...+...-. .-..++...-+.+-.+....+. ....++|.+..-+..++..+|..|...++.+....
T Consensus 215 ~~~~~-i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~ 290 (1266)
T KOG1525|consen 215 NLEDT-IANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK 290 (1266)
T ss_pred hhchh-HHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 44332 22222222222111 1112222233333333222111 12347888888888888999999999999887644
Q ss_pred CHHHH--HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh-h
Q 007842 312 NPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ-V 388 (587)
Q Consensus 312 ~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~ 388 (587)
+.... .+.++..+...+.|.+..||..+.+....+...-+. ......-.+.-...|.++++|....-.+..... .
T Consensus 291 ~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~ 368 (1266)
T KOG1525|consen 291 DSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IAKASTILLALRERDLDEDVRVRTQVVIVACDVMK 368 (1266)
T ss_pred hhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH
Confidence 33221 256777788888999999999999887765433211 111111111222234445555433222221110 0
Q ss_pred hchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 007842 389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 389 ~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~ 427 (587)
+... +...++..+.+.+.|+.|+||..++.-+..+.+.
T Consensus 369 ~~l~-~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 369 FKLV-YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhh-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 1122666777788999999999999999888874
No 133
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.03 E-value=0.0017 Score=61.41 Aligned_cols=209 Identities=13% Similarity=0.161 Sum_probs=135.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhH
Q 007842 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFD 434 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~ 434 (587)
+...+..+-.++..+-+..|+..|..+...-+. +++...++-.+.+.+.| .+...|..++..++.+.+.-....+.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 333444444454566777777777666533221 23335667777788888 88899999999999998875443332
Q ss_pred --HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--
Q 007842 435 --DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI-- 510 (587)
Q Consensus 435 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~-- 510 (587)
+..+.-++..-.|.+..|-..|.+..........+..-...+-|.+. ..++..-.++++++..+.+.+..+.
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL----TADEPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh----cCcchHHHHHHHHHHHHHhhcCHHHHH
Confidence 23344455566777776655555554444443333222233334333 2566677788889999998888765
Q ss_pred -HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 007842 511 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ 575 (587)
Q Consensus 511 -~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~ 575 (587)
..+.+.|.+++...+.+..||.+++.+|..+...+|.+. ..|-|.+|....-.=+..++.+
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~----mePhL~~Lt~sk~~LlqlYinR 505 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE----MEPHLEQLTSSKLNLLQLYINR 505 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh----hhhHhhhccHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999988543 3455555544333334444433
No 134
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.03 E-value=1.2e-05 Score=53.52 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007842 529 NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQS 579 (587)
Q Consensus 529 ~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~ 579 (587)
.||..++.+|+.+....+.. .+...++|.|..+++|++++||..|+.||++
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45666666666554333222 3445566666666666666666666666654
No 135
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0095 Score=59.36 Aligned_cols=142 Identities=23% Similarity=0.218 Sum_probs=60.1
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccccchhH-------HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh----hc
Q 007842 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV----IG 390 (587)
Q Consensus 322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~ 390 (587)
|.+-+.++-+|..||..|+..+-.+....|++. ..+.=...+.++|.|+.+.||..|...+.++... +.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 334444445555555555555544444433221 1222233344555555555555554444433321 12
Q ss_pred hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 007842 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (587)
Q Consensus 391 ~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 463 (587)
+..+.+.+-..+-++..|....||.+..+.+..+...--.-...+.++|.+-..+.|++..||.+++..+..+
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 2211111111122233444445555555555544432211112334455555555555555555555555444
No 136
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0018 Score=64.17 Aligned_cols=148 Identities=22% Similarity=0.216 Sum_probs=110.8
Q ss_pred hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcccc-------chHHHHHHhcCCChHHHHHHHHHhHHH----H
Q 007842 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-------DLVPAYVRLLRDNEAEVRIAAAGKVTK----F 307 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~-------~l~~~l~~~l~d~~~~vr~~a~~~l~~----l 307 (587)
....-|.+...++-++..||..|+..+-.+....+++.... .-...+..++.|+-+.||..|+..+.. +
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34466788888999999999999999887776666554221 234456778999999999988876654 4
Q ss_pred HhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 308 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (587)
.+.+++....+.+-..+..+..|....||.+..+.+..+...-......++++|.+-..+.|.+..||.++..-|..+-
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 4455655443333333445667888899999999999887665555678899999999999999999999988777653
No 137
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.034 Score=59.09 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=91.0
Q ss_pred hchhhHHhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHH
Q 007842 389 IGIDLLSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRL 463 (587)
Q Consensus 389 ~~~~~~~~~~l~~l~~~~~~----~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l 463 (587)
+|++.+...+.|.+.+.+.. .++.++.+|.-+++.+... +.+ |.+.-+|.++..++ .+++.||..++-++|.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 34445555666766666633 3566777776666665431 222 33444666666665 67777777777777777
Q ss_pred HHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842 464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 464 ~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
+-.++. +.+..-+++...+.|++..+|.+|+..+.++.-.- -.-.+..++.+..++.|+++.+|..|-..+..+..
T Consensus 989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 654443 33455666777777777777777777777765310 00124456667777777777777777655555554
Q ss_pred h
Q 007842 544 I 544 (587)
Q Consensus 544 ~ 544 (587)
+
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 3
No 138
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.99 E-value=0.00014 Score=74.03 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=100.4
Q ss_pred hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc
Q 007842 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (587)
Q Consensus 121 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 196 (587)
.+...+.|.+.+..+...-..|..-...+++...+.+.+ ....++|++.+.+.-++..||-....++..+....+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 345567777776666444455555555666666666654 4467788888888888888888877777776665543
Q ss_pred --chhhhHHHHHHHHhhhCCc---hhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHH
Q 007842 197 --AHLKTDIMSIFEDLTQDDQ---DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (587)
Q Consensus 197 --~~~~~~l~~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~ 267 (587)
....+.++|.+..+..|.+ -.||..|++++..+.+..|.. .+.+.++..+.+.++|+...||..|+.+=+.
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 3456677777777776665 467888888888888766653 2455677777777788877788877766443
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.98 E-value=1.7e-05 Score=52.85 Aligned_cols=53 Identities=23% Similarity=0.156 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHhhcccCh--HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 489 YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 489 ~~~R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
|.+|..|+.+||.++...+. ..+.+.++|.+..+++|+++.||.+++.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999987754443 225678889999999999999999999998865
No 140
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00048 Score=66.41 Aligned_cols=155 Identities=13% Similarity=0.070 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHhChHHHhhhhH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 477 (587)
-..+.+++.|.++..|...+-.+....-..|... ++..+++. .+|.+..||.+|+.++|-++-. ....+
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~----vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~~l 587 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNLG----VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRDLL 587 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch----hHhhhheeecccCchHHHHHHHHheeeeEec------Ccchh
Confidence 3456778899999999887665554333333322 33334443 7899999999999999987732 12345
Q ss_pred HHHHhhc-cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhH
Q 007842 478 PQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTI 554 (587)
Q Consensus 478 ~~l~~~l-~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i 554 (587)
+...+++ .+.|+.+|.....++|-.+...|.. ..+..+..+..|++.-||+.++-+++-|..+..++ .....+
T Consensus 588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 588 VGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 5555654 4568999999999999999888864 45667777888999999999999999988765544 223455
Q ss_pred HHHHHHhcCCCCc
Q 007842 555 RPCLVELTEDPDV 567 (587)
Q Consensus 555 ~~~l~~l~~d~d~ 567 (587)
..-+.++..|+-.
T Consensus 664 ~k~f~~vI~~Khe 676 (926)
T COG5116 664 IKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHhhhhH
Confidence 5555555555543
No 141
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.88 E-value=0.031 Score=54.72 Aligned_cols=169 Identities=14% Similarity=0.044 Sum_probs=110.1
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhCh--Hhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~--~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l 87 (587)
+..++-.+.|.|..+|..+...+..+...+++ +...+.++..+.+ ..|.++.||.++..+|.++-..-++++ ..+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~ 170 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI 170 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence 56778889999999999999999888877777 6666666666655 778889999999999887765434333 334
Q ss_pred HHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhH-HhhhHhhcCCCChHHHHHHH
Q 007842 88 LPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSA-CGLFHIAYPSAPDILKTELR 165 (587)
Q Consensus 88 ~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a-~~~l~~~~~~~~~~~~~~l~ 165 (587)
..+|..+++ |+...||..|+-.+.. + +.-.|++.+-+.|-+...|... ..++..+.........+.++
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~v-----d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~ 240 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNISV-----D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL 240 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHeee-----C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence 445555554 7888999988755432 1 2234555555555443333332 22333332222222334444
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHH
Q 007842 166 SIYTQLCQDDMPMVRRSAASNLGKFAA 192 (587)
Q Consensus 166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~ 192 (587)
++...+.|.+..||.++..++..-..
T Consensus 241 -l~ewgl~dRe~sv~~a~~d~ia~~w~ 266 (885)
T COG5218 241 -LMEWGLLDREFSVKGALVDAIASAWR 266 (885)
T ss_pred -hhhhcchhhhhhHHHHHHHHHHHHhc
Confidence 66677889999999999888776443
No 142
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.87 E-value=0.017 Score=66.09 Aligned_cols=290 Identities=12% Similarity=0.161 Sum_probs=165.3
Q ss_pred HHHHHHhHHHHHHhhcc------chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-h-----hhhh-chHHHH
Q 007842 180 RRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-----DCVA-HILPVI 246 (587)
Q Consensus 180 r~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~-~l~~~l 246 (587)
|....+-+..++...-. ...+..+-+.+.......+..++..|+..|..++-.+-+ + .+.+ .+-|+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 55556666666555332 122334444455543444567888888888888765443 1 1222 344433
Q ss_pred HHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH------HHHHH
Q 007842 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQ 318 (587)
Q Consensus 247 ~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~ 318 (587)
.-+.+..+..||...++++.++....+... .++.++..+.....++++.+-..+...+..+....-. .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 334455678999999999999987665422 3567788887777787777777778877766543111 12223
Q ss_pred hHhHHHHHhccCC-cHHHHHHHHHHHHccccc-----------------------------------cchhHHHHhHHHH
Q 007842 319 HILPCVKELSSDS-SQHVRSALASVIMGMAPL-----------------------------------LGKDATIEQLLPI 362 (587)
Q Consensus 319 ~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~-----------------------------------~~~~~~~~~l~~~ 362 (587)
..+..+..+.... +..+--.++..+..++.. .+.+......+|.
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4445554444322 122222222222211000 0111222345666
Q ss_pred HHH---hhcCCChHHHHHHHHhhhhhhhhhchh--------hHHhhHHHHHHHHhc-----------------C------
Q 007842 363 FLS---LLKDEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAIVELAE-----------------D------ 408 (587)
Q Consensus 363 l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~~~~-----------------~------ 408 (587)
+.. +..|+..+||..|++.|-.+...+|.. .+...+.|.+..+-. +
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 554 467899999999999999988887753 122345555543210 0
Q ss_pred CChHHHHHHHHHHHHHHHhhCh-----hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842 409 RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
..| ....+..++..++..+.. ....+.++.++..++..++..+-.....+|..++...|..
T Consensus 1429 ~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1429 DAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 112 345555555555544321 1123445556666777888888888999999998877654
No 143
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00064 Score=65.56 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=82.2
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHH
Q 007842 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (587)
Q Consensus 166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 245 (587)
.++.+++.|.++..|...+-+++.-.-.-+.......+++ -..+|.++.||++|+-+++-++-. + ...+...
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh---~avsD~nDDVrRAAViAlGfvc~~--D---~~~lv~t 590 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLH---YAVSDGNDDVRRAAVIALGFVCCD--D---RDLLVGT 590 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhe---eecccCchHHHHHHHHheeeeEec--C---cchhhHH
Confidence 3555666777777776554444432222222222222222 235666777777777666654321 1 1223333
Q ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHH
Q 007842 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPC 323 (587)
Q Consensus 246 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~ 323 (587)
+.-+..+-++.||...+-++|-.|..-|. +.-+.++..+..|...-||++|+-+++-+.-.+.++ .-...+...
T Consensus 591 velLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~ 666 (926)
T COG5116 591 VELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKK 666 (926)
T ss_pred HHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHH
Confidence 33344445667777777777766654332 234555666667777777777777777666555443 122344555
Q ss_pred HHHhccCCcH
Q 007842 324 VKELSSDSSQ 333 (587)
Q Consensus 324 l~~~~~d~~~ 333 (587)
+.+.+.|++.
T Consensus 667 f~~vI~~Khe 676 (926)
T COG5116 667 FNRVIVDKHE 676 (926)
T ss_pred HHHHHhhhhH
Confidence 5555555443
No 144
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.76 E-value=0.05 Score=53.37 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007842 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (587)
Q Consensus 199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~ 276 (587)
++..++..+......++..||..+++.+..+.+..++ +...+.++..+..-+-|..+.||..|+.++..+-..-+++.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 4444555555666777788888888888888887776 44455566666666667888888888888887765433322
Q ss_pred cccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHH-HHHHccccccchhH
Q 007842 277 TRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALA-SVIMGMAPLLGKDA 354 (587)
Q Consensus 277 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~-~~l~~l~~~~~~~~ 354 (587)
..+...+...+ .|++.+||..|+-.+.. + +.-.|++.....|-+...|+... .++..++......
T Consensus 168 --n~~~n~l~~~vqnDPS~EVRr~allni~v-----d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls- 234 (885)
T COG5218 168 --NRIVNLLKDIVQNDPSDEVRRLALLNISV-----D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS- 234 (885)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHeee-----C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-
Confidence 23444444444 57888898887765422 1 23357777777887776666554 4555665432111
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
....+. .+...+.|.+..|+.++...+..
T Consensus 235 i~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 235 IDKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 111222 56677888888888888877654
No 145
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.038 Score=60.86 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHH
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 512 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~ 512 (587)
..++|.+...|..++..+|..|+..+|.+....+...+ .+.++...+.-+.|....+|+.+++....+....+. ..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hh
Confidence 44788888889999999999999999999876554433 345666777778999999999999999998765332 11
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh-hchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~-~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
......+.....|.++.+|.....++..+... +.-... ..++..+.+.+.|+-+.||..|...|.++.+
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~-~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYI-PLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22222222233556666665554444332111 111111 2266677777899999999999999998877
No 146
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.74 E-value=4.6e-05 Score=43.39 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=16.1
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 555 RPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 555 ~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
+|.+.++++|++++||..|+.+|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45555555566666666666666555543
No 147
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.70 E-value=6.8e-05 Score=42.67 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=15.6
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 007842 243 LPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~ 270 (587)
+|.+.++++|++|+||..|+.+++.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4555555556666666666666555554
No 148
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.70 E-value=0.015 Score=52.92 Aligned_cols=141 Identities=12% Similarity=0.182 Sum_probs=69.2
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhhCHHHH----HHhHhHHHHHhccCCcHHHHHHHHHHHHcccc--ccchhHHHHhH
Q 007842 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAP--LLGKDATIEQL 359 (587)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~l 359 (587)
-..+.++++.+|..++..|..+...++++.. ...++.++...+.|. ..+..+ +..+..+.. .++.+. ...+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~-~~~i 81 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPES-AVKI 81 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhh-HHHH
Confidence 3456777888888888888888887775422 234555555555432 223333 444444432 122222 1222
Q ss_pred HHHHHHhh--cCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhC
Q 007842 360 LPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 360 ~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~ 429 (587)
+..+.+.. +......|..+.+.+..+....... ......+..+.+.+ ++++||.=..+.+.+..+...+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 22222211 1223556666666666665543211 11122333333333 34566665555555555555444
No 149
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.68 E-value=0.021 Score=52.02 Aligned_cols=228 Identities=14% Similarity=0.155 Sum_probs=143.8
Q ss_pred HHHhccCCcHHHHHHHHHHHHccccccchhHH----HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh--hchhhHHhh
Q 007842 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQS 397 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~ 397 (587)
+...+.++++.+|..+...|..+...++++.. .+.++.++..-+.|. ..+.. ++.++..+.+. ++.+. ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHhCcCCChhh-HHH
Confidence 45567889999999999999988877765332 355667777777554 33433 36666666532 22222 123
Q ss_pred HHHHHHHHh--cCCChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842 398 LLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWA 472 (587)
Q Consensus 398 ~l~~l~~~~--~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~ 472 (587)
++..+.+-. +.-....|..+.+.+..+........ ..+.++..+.+.+ +..+++--..+.+.+..+.+.+....+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 333333211 22345789999998888876542211 1123333444433 567787777788888888887765555
Q ss_pred hhhhHHHHHhhc--------cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 473 MQHITPQVLEMI--------NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 473 ~~~l~~~l~~~l--------~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
.+.++..+..++ +|+..-.|+.--.++..... ....+.+..+|.++.-+.+..+.++.-++++|...+..
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 666666655442 23333344444444444433 22346788999999999999999999999999999999
Q ss_pred hchHHHHhhHHH
Q 007842 545 VDQSMVEKTIRP 556 (587)
Q Consensus 545 ~~~~~~~~~i~~ 556 (587)
++.+...+++.+
T Consensus 239 y~~~~~~~~~~~ 250 (262)
T PF14500_consen 239 YGADSLSPHWST 250 (262)
T ss_pred CCHHHHHHHHHH
Confidence 988755444433
No 150
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.67 E-value=0.0064 Score=58.39 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc------CCchhHHHHHHHHHHHhhccc-----C---------
Q 007842 448 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVM-----G--------- 507 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~~R~~a~~~l~~l~~~~-----~--------- 507 (587)
.....|.+|...+..+++.++... .+.+...+..+++ ..+|+-+.+|+..++.++... |
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 346788999999999998766542 2222222222222 347899999999999998533 1
Q ss_pred -hHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007842 508 -SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577 (587)
Q Consensus 508 -~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al 577 (587)
.+++...++|.+. .-.+..|.+|..|++.+..+-..++.+. ...++|.+...+.+++.-|+.+|+.|+
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1345677788877 4446789999999999999988876654 466999999999999999999999875
No 151
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.67 E-value=0.02 Score=53.90 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=92.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchH
Q 007842 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (587)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (587)
+-.++....+++++.||+.+.+++|-++-.- ...-...++++.+..+.+++.+|..|++++..+.-..+.......
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld--~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~-- 103 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD--KELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE-- 103 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch--
Confidence 3345567788888899999999988877652 344445566666665555778888888887777655543211100
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh--hCH-HHHHHhH
Q 007842 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI--LNP-ELAIQHI 320 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~-~~~~~~i 320 (587)
.+++ .......+...+.+.+.+.++++|..+++++.++.-. +.. ......+
T Consensus 104 -------~~~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L 157 (298)
T PF12719_consen 104 -------SDND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL 157 (298)
T ss_pred -------hccC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 0000 1112234566666666666666777777766664432 222 2222222
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhc
Q 007842 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK 368 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~ 368 (587)
+-..-.-...++.++|......+..++..-. ++.+.+.++|.+..+.+
T Consensus 158 ll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 158 LLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 2111111223345666666655555544322 22234445555555444
No 152
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.60 E-value=0.01 Score=62.65 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=118.1
Q ss_pred CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--
Q 007842 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-- 408 (587)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-- 408 (587)
..+..|.....++...+.. .. +-.+.+++....-.- ..+...+..+....... ...++..+.++++.
T Consensus 376 ~~~~~r~~~lDal~~aGT~----~a----v~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~P--t~e~l~~l~~L~~~~~ 444 (618)
T PF01347_consen 376 KKEQARKIFLDALPQAGTN----PA----VKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRP--TEELLKELFELAKSPK 444 (618)
T ss_dssp --HHHHHHHHHHHHHH-SH----HH----HHHHHHHHHTT-S-H-HHHHHHHHHHHHT-------HHHHHHHHHHHT-HH
T ss_pred cHHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCC--CHHHHHHHHHHHhCcc
Confidence 3567777777777766531 11 122333333321111 11333333333222111 13445555555543
Q ss_pred --CChHHHHHHHHHHHHHHHhhChh----------------hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842 409 --RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 409 --~~~~vR~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
.+..+|..++-.++.+....... .+.+.+...+.......+...+..++.+||++..
T Consensus 445 ~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----- 519 (618)
T PF01347_consen 445 VKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----- 519 (618)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------
T ss_pred ccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----
Confidence 45678888888888877654222 2334455555555567778889999999998753
Q ss_pred HHhhhhHHHHHhhccCC---chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 471 WAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 471 ~~~~~l~~~l~~~l~d~---~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
...++.+...+.+. ...+|.+|+.++..+..... +.+.+.++|.+.+- ..++++|.+|...|-..-+..
T Consensus 520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~~~P~~-- 591 (618)
T PF01347_consen 520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMNT--TEDPEVRIAAYLILMRCNPSP-- 591 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH-T--TS-HHHHHHHHHHHHHT---H--
T ss_pred ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCCH--
Confidence 35677787777665 67899999999998865443 22344444444442 236789999987777653321
Q ss_pred HHHHhhHHHHHHH-hcCCCCccHHHHHHHHH
Q 007842 548 SMVEKTIRPCLVE-LTEDPDVDVRFFATQAI 577 (587)
Q Consensus 548 ~~~~~~i~~~l~~-l~~d~d~~Vr~~a~~al 577 (587)
..+..+.. +-.|++..|+......|
T Consensus 592 -----~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 592 -----SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp -----HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 23333333 56788889988776655
No 153
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.60 E-value=0.043 Score=51.67 Aligned_cols=214 Identities=16% Similarity=0.160 Sum_probs=104.2
Q ss_pred HhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh-----------h
Q 007842 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----------F 433 (587)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~-----------~ 433 (587)
..++..++.||..++++++-.+- ++.+ .....++.+...++..+..+|..+++++-.+....|.+. .
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~L-ld~~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCL-LDKE-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH-hChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 33444444555555554444331 1111 112233333333333344455555444444444333221 2
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC----CchhHHHHHHHHHHHhhcccC--
Q 007842 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG-- 507 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----~~~~~R~~a~~~l~~l~~~~~-- 507 (587)
...+...+...+.+.++.+|..|++.++++.-.-.... .+.++..++-...+ ++...|+.--.++...+....
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 23466677777777788888888888888764211100 12334444333333 356677777666666654322
Q ss_pred hHHHHhhHHHHHHhhcCCCC----hhHHHHHHHHHHHhhhhhch--------------HHHHhhHHHHHHHhcCCCCcc-
Q 007842 508 SEITCSRLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQ--------------SMVEKTIRPCLVELTEDPDVD- 568 (587)
Q Consensus 508 ~~~~~~~il~~l~~~l~d~~----~~vR~~~~~~l~~l~~~~~~--------------~~~~~~i~~~l~~l~~d~d~~- 568 (587)
...+.+.++|.+..+.+.+. +.-.....+....+.....+ ..+.......+..+.+|+...
T Consensus 191 Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~ 270 (298)
T PF12719_consen 191 QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEK 270 (298)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccch
Confidence 22244556666666544332 11111222222222222111 123344566666677666655
Q ss_pred -HHHHHHHHHHHHH
Q 007842 569 -VRFFATQAIQSID 581 (587)
Q Consensus 569 -Vr~~a~~al~~l~ 581 (587)
.+..-.++|+++.
T Consensus 271 ~~~k~~~~~L~~L~ 284 (298)
T PF12719_consen 271 EERKALCKALSKLE 284 (298)
T ss_pred HHHHHHHHHHhccc
Confidence 7777777877764
No 154
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.59 E-value=0.094 Score=60.37 Aligned_cols=304 Identities=12% Similarity=0.119 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHhhhcCh------hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC-c-----cccchHHHHH
Q 007842 219 RLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P-----TRMDLVPAYV 286 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~-----~~~~l~~~l~ 286 (587)
|.-+++-+..++..--. ...|..+.+.+.....+++..++..|+..|.+++..+-+. . .-++++..|.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 55555555555543222 2345556666677656667789999999998888755431 1 1234666666
Q ss_pred HhcC-CChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc-cc---h--hHHHH
Q 007842 287 RLLR-DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LG---K--DATIE 357 (587)
Q Consensus 287 ~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~ 357 (587)
..+. ..+.++|...++++..+....+.. ...+.++..+.....++++.+-..+.+.+..+... ++ . .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 6554 456899999999999887765543 12356666776666788887777787777665432 11 1 11223
Q ss_pred hHHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhh-----------------------------------chhhHHhhHHHH
Q 007842 358 QLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI-----------------------------------GIDLLSQSLLPA 401 (587)
Q Consensus 358 ~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~-----------------------------------~~~~~~~~~l~~ 401 (587)
.++..+.++.+.. +.++-..++..|..++..+ +.+......+|.
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4444444444332 2444444554444332211 011112345555
Q ss_pred HHH---HhcCCChHHHHHHHHHHHHHHHhhChhh--------hHHHHHHHHHHhcC----------------------CC
Q 007842 402 IVE---LAEDRHWRVRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLQ----------------------DK 448 (587)
Q Consensus 402 l~~---~~~~~~~~vR~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~----------------------d~ 448 (587)
+.. +..|+...||..+++.+-.+....|..+ +...+.|++..+-. +.
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 544 5678999999999998877776665322 23345555433210 12
Q ss_pred chHHHHHHHHHHHHHHHHhChHH-----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHH
Q 007842 449 VYSIRDAAANNLKRLAEEFGPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVI 520 (587)
Q Consensus 449 ~~~vr~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~ 520 (587)
..++......++..++..+..-+ ..+.++..+...+..++..+-..+..|+..+....|..+ .+..+...+.
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 23466777777777776554432 224444444455667788888889999999887666532 3444444444
Q ss_pred hh
Q 007842 521 NA 522 (587)
Q Consensus 521 ~~ 522 (587)
++
T Consensus 1509 ~l 1510 (1780)
T PLN03076 1509 EA 1510 (1780)
T ss_pred HH
Confidence 43
No 155
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.1 Score=58.59 Aligned_cols=232 Identities=18% Similarity=0.146 Sum_probs=133.2
Q ss_pred hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhC--
Q 007842 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN-- 312 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~-- 312 (587)
+.....-..++...+..+++..|..+.++++.++...+...+...+...+..-+.+ .++..|..-..+++.+-+..|
T Consensus 871 e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~ 950 (2067)
T KOG1822|consen 871 EEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI 950 (2067)
T ss_pred HHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence 33444445555566667788888888888888888877665555555555555554 446667666677777766554
Q ss_pred -HHHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhc-C--CChHHHHHHHHhhh--
Q 007842 313 -PELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK-D--EFPDVRLNIISKLD-- 383 (587)
Q Consensus 313 -~~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-d--~~~~vr~~a~~~l~-- 383 (587)
.......-+..+..+.+|++. .|+.....++..+....++.. +.+..+..+..++- + ...+++...-+.+.
T Consensus 951 ~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~ 1030 (2067)
T KOG1822|consen 951 GSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGD 1030 (2067)
T ss_pred CCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccc
Confidence 333334444566666677654 888888887777665544422 12222233333332 2 23445554444444
Q ss_pred ----hhhhhhchhh-----------HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842 384 ----QVNQVIGIDL-----------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 448 (587)
Q Consensus 384 ----~l~~~~~~~~-----------~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 448 (587)
.++..+|++- +....+-...-.+..+++-+...+++++..+.-.-+...-.+.+++.+..++...
T Consensus 1031 ~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1031 DDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSS 1110 (2067)
T ss_pred hhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcch
Confidence 4444444321 1111111111123445777888888877776544333333456777777777777
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 007842 449 VYSIRDAAANNLKRLAEEF 467 (587)
Q Consensus 449 ~~~vr~~a~~~l~~l~~~~ 467 (587)
-.-.|.+++.++..+.+..
T Consensus 1111 ~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred hhhhhhhHHhhhhHHhHHH
Confidence 7777888888877776643
No 156
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.0018 Score=67.18 Aligned_cols=219 Identities=18% Similarity=0.144 Sum_probs=143.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh---hChhh
Q 007842 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ---LGVGF 432 (587)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~---~~~~~ 432 (587)
+|++++.|-+. --|..|+..|+++.. +|.= .+.-.+.|.+.++++++-...|-..+-.+..+... ...+.
T Consensus 474 LPiVLQVLLSQ--vHRlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL 550 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ--VHRLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL 550 (1387)
T ss_pred cchHHHHHHHH--HHHHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH
Confidence 35555444332 235557777777764 2221 22346789999999999989988887777666432 12222
Q ss_pred hHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHhCh--H-HHhhhhHHHHHhhccCC-chhHHHHHHHHHHHhhcc
Q 007842 433 FDDKLGALCMQWLQD---KVYSIRDAAANNLKRLAEEFGP--E-WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPV 505 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~ 505 (587)
+++..-..++..+.+ -+++-|.-|+-.|+.++..+.- + -+...++..++..++|+ .+-.|+-.+-+||.+-+.
T Consensus 551 vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 551 VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred HhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 222211222333333 1347788888899999886533 2 24567888888888885 789999999999999876
Q ss_pred cChHHH---HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh----chH--------------HHHhhHHH----HHHH
Q 007842 506 MGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV----DQS--------------MVEKTIRP----CLVE 560 (587)
Q Consensus 506 ~~~~~~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~----~~~--------------~~~~~i~~----~l~~ 560 (587)
+....+ ....-..+...++|+.++||.+++.+|+.+.... .+. ...+...+ .+..
T Consensus 631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~ 710 (1387)
T KOG1517|consen 631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA 710 (1387)
T ss_pred cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence 655432 3456677888899999999999999999988752 211 00122222 4445
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 007842 561 LTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 561 l~~d~d~~Vr~~a~~al~~l~ 581 (587)
+.+|..+-||...+-+|..+.
T Consensus 711 ~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHhccchHHHHHHHHHHHHHH
Confidence 678999999988888877654
No 157
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.13 Score=52.14 Aligned_cols=510 Identities=12% Similarity=0.157 Sum_probs=237.0
Q ss_pred cccHHHHHHHhcCc--cHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc-CCC----
Q 007842 8 LYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY-VGG---- 80 (587)
Q Consensus 8 ~~~~~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~-~~~---- 80 (587)
++.++..+.....+ |+..|++|+..+..+-. .+..++--+..+.+.. .++.++--..+.|...++. .+.
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs---Sp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~ 77 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS---SPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLN 77 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC---CccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHH
Confidence 44566666666654 88999999998887632 2334444455555433 3444443333333332221 110
Q ss_pred -cc-hHhhhHHHHhh-hhcch----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc
Q 007842 81 -VE-HAHVLLPPLET-LCTVE----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (587)
Q Consensus 81 -~~-~~~~l~~~l~~-l~~~~----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~ 153 (587)
.. ....+...+.. .+.++ -+-++.++.+.+..+.-...+......+..++.-+..+. +.+....+..+.
T Consensus 78 elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s----~~~~~dfflkvl 153 (980)
T KOG2021|consen 78 ELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS----AISGLDFFLKVL 153 (980)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc----chhhHHHHHHHH
Confidence 00 11223333332 22233 357889999999998877777665555555554443332 111111111111
Q ss_pred CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
-..+.+..+.- ..+ .+.++++.. .+..-+..-.-+........++...-+..++.+-..+++++++..+.+
T Consensus 154 laIdsEiad~d------v~r-T~eei~knn--liKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWI 224 (980)
T KOG2021|consen 154 LAIDSEIADQD------VIR-TKEEILKNN--LIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWI 224 (980)
T ss_pred HHhhhHhhhcc------ccC-ChHHHHHHh--hHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhh
Confidence 11111000000 000 011111110 000000000001111111222222222235666666677776666655
Q ss_pred Chhh-hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH---hc----CC--ChHHHHHHHHHh
Q 007842 234 EPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR---LL----RD--NEAEVRIAAAGK 303 (587)
Q Consensus 234 ~~~~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~---~l----~d--~~~~vr~~a~~~ 303 (587)
.-.. ..+..++++...++ ...+|.+|+.++-.+...--+...+-.++..+.. +. .| .+.++- ..
T Consensus 225 dInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~----e~ 298 (980)
T KOG2021|consen 225 DINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFW----ES 298 (980)
T ss_pred hhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHH----HH
Confidence 4321 13446666666665 4678888888877766431111111123333311 11 12 222222 22
Q ss_pred HHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhh
Q 007842 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (587)
Q Consensus 304 l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (587)
+..+....|.+ ++-...++.+.-+..++..+...+ ..++|.+.+.+.++..++-.+...-+.
T Consensus 299 vskLitg~gve-----l~~i~s~lnseld~~~kqn~l~~l-------------l~~vpyllq~l~~e~ddit~~ifpFls 360 (980)
T KOG2021|consen 299 VSKLITGFGVE-----LTIIISQLNSELDTLYKQNVLSIL-------------LEIVPYLLQFLNNEFDDITAKIFPFLS 360 (980)
T ss_pred HHHHHhhccee-----eehhHhhhhhccCHHHHHHHHHHH-------------HHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 22333333322 111222222333344444333221 235677777777776666665555444
Q ss_pred hhhhhhch------h---hHHhhHHHHHHHHhcC------CC----------hHHHHHHHHHHHHHHHhhChhhhHHHHH
Q 007842 384 QVNQVIGI------D---LLSQSLLPAIVELAED------RH----------WRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (587)
Q Consensus 384 ~l~~~~~~------~---~~~~~~l~~l~~~~~~------~~----------~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 438 (587)
.....+.. . .+...+...+.++.-| .+ ..+|...-.....++ .+.++.+...+-
T Consensus 361 dyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir 439 (980)
T KOG2021|consen 361 DYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIR 439 (980)
T ss_pred HHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 43322211 1 1112233333333311 11 346666444333333 345555554444
Q ss_pred HHHHHh---cCCCchHHHHHHHHHHHHHHHHhChHHH------------hhhhHHHHHh--hccCCchhHHHHHHHHHHH
Q 007842 439 ALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEWA------------MQHITPQVLE--MINNPHYLYRMTILRAISL 501 (587)
Q Consensus 439 ~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~l~~~l~~--~l~d~~~~~R~~a~~~l~~ 501 (587)
..+-.. -+.++|..-+.|+..+-.+.+....+.+ ...+++.++. ....++..+..-.++.+.+
T Consensus 440 ~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivR 519 (980)
T KOG2021|consen 440 QSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVR 519 (980)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHH
Confidence 444333 3567788888998888888765533221 1133333332 2455677777777777777
Q ss_pred hhcccChHHHHhhHHHHHHhh------cCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhc
Q 007842 502 LAPVMGSEITCSRLLPVVINA------SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELT 562 (587)
Q Consensus 502 l~~~~~~~~~~~~il~~l~~~------l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~ 562 (587)
....+..+ ..-+|.++.. +.+++..||..+...+.+..+.+... .+.+.++..+..++
T Consensus 520 Y~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 520 YNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544433 3345555543 45669999999999999988776544 34455555555444
No 158
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.007 Score=54.32 Aligned_cols=179 Identities=12% Similarity=0.109 Sum_probs=120.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHH---HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHh--
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-- 473 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-- 473 (587)
+......+.+.+|......+..+..++..-. +.... .++..+.+-+++....|-.+|+.+++.+++.++.....
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445678899998888888887765432 33322 34445566678899999999999999999988765322
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH----H
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----M 549 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~ 549 (587)
+.++-.|..-....+.-+|..|-.+|..+.....+. .+++.+...+++.++.+|..++..+......++-. +
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~ 244 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ 244 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhH
Confidence 222222222233457789999999999999887764 56667777788889999999999988887776522 2
Q ss_pred HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 550 VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 550 ~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+.....+.+.+-..|.=+.+|..|.-.+....+
T Consensus 245 ~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~ 277 (334)
T KOG2933|consen 245 GSCDLSRAAQEQGSDKLPELREAARFVRLELKE 277 (334)
T ss_pred hHHHHHHHHHhhhcccccccccchhHHHHhHHH
Confidence 333455666665566666555555444444433
No 159
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.51 E-value=0.21 Score=53.88 Aligned_cols=169 Identities=15% Similarity=0.089 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhhChhhhH--HHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHhChHHHhh--hhHHHHHhhccC
Q 007842 414 RLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD---KVYSIRDAAANNLKRLAEEFGPEWAMQ--HITPQVLEMINN 486 (587)
Q Consensus 414 R~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~d 486 (587)
|..+-.++..+++.+|...+. +++...++..+.+ .+. --......+..+....+ +++.. ..+|.+.....+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~-s~l~~~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMH-SFLHPLGSLLPRLFFFVRS 827 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhh-hhhhhhhhhhhHHHHhccc
Confidence 666777788888888866543 3344444443322 110 00111111111111111 11222 567788888888
Q ss_pred CchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc---hHHHHhhHHHHHHHhcC
Q 007842 487 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTE 563 (587)
Q Consensus 487 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~ 563 (587)
....+|.++.++++.+.+....+ ....++..+..++.+.+..+|...+..+-....... ...+...++|.|...+.
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~e-~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATRE-TMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 89999999999999998765544 335566677777888777777766665554443322 22455667778888889
Q ss_pred CCCccHHHHHHHHHHHHHHhhc
Q 007842 564 DPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 564 d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
|....||..|.+++..+..+++
T Consensus 907 d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999877654
No 160
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.41 E-value=0.059 Score=57.00 Aligned_cols=217 Identities=17% Similarity=0.146 Sum_probs=109.9
Q ss_pred ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc-Ch-hhhhhchHHHHHHhccCC
Q 007842 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP-QDCVAHILPVIVNFSQDK 253 (587)
Q Consensus 176 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~-~~~~~~l~~~l~~~~~d~ 253 (587)
....|.....++...... .....+...+.. .+-... .+...+..+.... .+ ......+.+++..-....
T Consensus 377 ~~~~r~~~lDal~~aGT~----~av~~i~~~I~~---~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~ 447 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTN----PAVKFIKDLIKS---KKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKN 447 (618)
T ss_dssp -HHHHHHHHHHHHHH-SH----HHHHHHHHHHHT---T-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT
T ss_pred HHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc---CCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccC
Confidence 456677766666654432 222333333222 222211 1334454444433 22 333444444443322234
Q ss_pred cHHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCChHHHHHHHHHhHHHHHhhhCHHHHH
Q 007842 254 SWRVRYMVANQLYELCEAVGPE------------PTRMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPELAI 317 (587)
Q Consensus 254 ~~~vR~~a~~~l~~~~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 317 (587)
++.+|..++-+++.+....... ...+.+++.+...+ ...+.+.+..++++|+.++.
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 6789999999999988754222 22334555554444 34566778888888888753
Q ss_pred HhHhHHHHHhccCC---cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842 318 QHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 318 ~~i~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (587)
+..++.+...+.+. ...+|.+|+.++..++...+ +...+.++|++.+ ..++.++|.+|+..|-..-+.
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~P~------ 590 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMN--TTEDPEVRIAAYLILMRCNPS------ 590 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT---------
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCCC------
Confidence 34566676666655 67899999999988754432 2233344444333 234578999988777654332
Q ss_pred HhhHHHHHHHHh-cCCChHHHHHHHH
Q 007842 395 SQSLLPAIVELA-EDRHWRVRLAIIE 419 (587)
Q Consensus 395 ~~~~l~~l~~~~-~~~~~~vR~~~~~ 419 (587)
..++..+...+ .+++..|+..+..
T Consensus 591 -~~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 591 -PSVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp -HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred -HHHHHHHHHHHhhCchHHHHHHHHH
Confidence 23344444433 4566666655443
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0088 Score=62.37 Aligned_cols=222 Identities=13% Similarity=0.137 Sum_probs=142.3
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccchhH---HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh---H
Q 007842 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---L 394 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~ 394 (587)
+|.+.+.+-.. --|.-|...|+.+...-+... ..--++|.++++|++.-.+.|...+-..++|...=..-+ +
T Consensus 474 LPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv 551 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV 551 (1387)
T ss_pred cchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence 45444443322 234445555555543322221 122478999999999999999888777777654321100 0
Q ss_pred HhhHHHHHHHHhcC---CChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHh
Q 007842 395 SQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEF 467 (587)
Q Consensus 395 ~~~~l~~l~~~~~~---~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~ 467 (587)
.+..-..+.+.+.+ -+++.|..++-.+..+...+. .+.+...++.+++..++|+ .+-.|+-.+-+||.+-+.+
T Consensus 552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~ 631 (1387)
T KOG1517|consen 552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY 631 (1387)
T ss_pred hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc
Confidence 00000001111222 235788888888888887653 3344556788888899985 7899999999999998877
Q ss_pred ChHHH---hhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc----ChHH--------------HHhhHH----HHHHhh
Q 007842 468 GPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM----GSEI--------------TCSRLL----PVVINA 522 (587)
Q Consensus 468 ~~~~~---~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~----~~~~--------------~~~~il----~~l~~~ 522 (587)
....+ .......|...+.|+-++||.+|+.++|.+.... .... ..+... -.++..
T Consensus 632 ~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~ 711 (1387)
T KOG1517|consen 632 DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLAL 711 (1387)
T ss_pred chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHH
Confidence 55422 2445566777889999999999999999998752 2110 012222 367778
Q ss_pred cCCCChhHHHHHHHHHHHhhhh
Q 007842 523 SKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 523 l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
++|.++-||...+-++..+.-.
T Consensus 712 vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 712 VSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred HhccchHHHHHHHHHHHHHHHh
Confidence 8999999999999999887654
No 162
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.44 Score=52.79 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=95.1
Q ss_pred HhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHh--hC-hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842 395 SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 395 ~~~~l~~l~~~-~~~~~~~vR~~~~~~l~~l~~~--~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
.+.++..+..+ ..+..|++|.++++.+..+.-. ++ .+.-.+.+-..+...+.|.+-+||+.|+.+|.-+.+.-...
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 35566666643 3457899999999988876543 22 22234667888899999999999999999999988632211
Q ss_pred HHhhhhHHHHHhh--ccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 471 WAMQHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 471 ~~~~~l~~~l~~~--l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
+ ........... ....+...+.+|...+|.++-.++-.. +.++.+..+....+++ ..++.++-+++...-....
T Consensus 1604 ~-~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1604 F-VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred c-chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence 1 11112222221 223356678889999999987655321 2233333344444454 7788888888888765443
No 163
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.28 E-value=0.033 Score=58.20 Aligned_cols=214 Identities=17% Similarity=0.207 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--
Q 007842 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-- 408 (587)
Q Consensus 333 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-- 408 (587)
+..|.....++...+.. .. +..+.+.+.... ......++..+......- ...++..+.+++++
T Consensus 340 ~~~r~~~~Dal~~~GT~----~a----~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P-----t~~~l~~l~~l~~~~~ 406 (574)
T smart00638 340 KKARRIFLDAVAQAGTP----PA----LKFIKQWIKNKKITPLEAAQLLAVLPHTARYP-----TEEILKALFELAESPE 406 (574)
T ss_pred HHHHHHHHHHHHhcCCH----HH----HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC-----CHHHHHHHHHHhcCcc
Confidence 66777777777666531 11 223334444332 222222333332222211 13556666666665
Q ss_pred --CChHHHHHHHHHHHHHHHhhCh------hhhHHHHHHHHH----HhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 007842 409 --RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCM----QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 476 (587)
Q Consensus 409 --~~~~vR~~~~~~l~~l~~~~~~------~~~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 476 (587)
+++.+|..++-.++.+...... ....+.+.+.+. ....+.+...+..++++||++... ..
T Consensus 407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--------~~ 478 (574)
T smart00638 407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--------SS 478 (574)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--------hH
Confidence 3567888888888888874421 111233444444 444556777788888888876532 22
Q ss_pred HHHHHhhcc---CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhh
Q 007842 477 TPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKT 553 (587)
Q Consensus 477 ~~~l~~~l~---d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 553 (587)
++.+...+. .....+|..|+.++..++...... ..+.+++.+.+ .+.++++|.+|+..+-..-+.. .
T Consensus 479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P~~-------~ 548 (574)
T smart00638 479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVLMETKPSV-------A 548 (574)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCCH-------H
Confidence 333333333 235689999999999887654432 33344444432 2357889999998887764432 2
Q ss_pred HHHHHHH-hcCCCCccHHHHHHHHH
Q 007842 554 IRPCLVE-LTEDPDVDVRFFATQAI 577 (587)
Q Consensus 554 i~~~l~~-l~~d~d~~Vr~~a~~al 577 (587)
.+..+.. +..|++..|+......|
T Consensus 549 ~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 549 LLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 3333333 56788888887765543
No 164
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.23 E-value=0.0068 Score=51.25 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=47.3
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 524 KDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 524 ~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
.+.+..+-...++++..++...+.. .+...++..+..+..+.|.+||..+..+++.+...
T Consensus 112 ~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 112 AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred cccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 4557778889999999998776654 44566667777788899999999999999987653
No 165
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.17 E-value=0.052 Score=56.71 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=91.8
Q ss_pred HHHHHHhhcC----CChHHHHHHHHhhhhhhhhhch------hhHHhhHHHHHHH----HhcCCChHHHHHHHHHHHHHH
Q 007842 360 LPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVE----LAEDRHWRVRLAIIEYIPLLA 425 (587)
Q Consensus 360 ~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~l~~l~~----~~~~~~~~vR~~~~~~l~~l~ 425 (587)
+..+..++++ .++.++..++-+++.+....-. ....+.++|.+.+ ...+.+...+..++++||.+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 3344444443 3577888888888888753321 1112344444444 334456666777888777653
Q ss_pred HhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC--CchhHHHHHHHHHHHhh
Q 007842 426 SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLA 503 (587)
Q Consensus 426 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~ 503 (587)
. ......+.|.+. .-.+....+|.+|+.+|..+...... .+.+.+...+.| .+..+|.+|+..+-..-
T Consensus 475 ~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~ 544 (574)
T smart00638 475 H----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLMETK 544 (574)
T ss_pred C----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 2 222223333332 12344578999999999988764332 234444444444 36789999998887663
Q ss_pred cccChHHHHhhHHHHHHh-hcCCCChhHHHHHHHHH
Q 007842 504 PVMGSEITCSRLLPVVIN-ASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 504 ~~~~~~~~~~~il~~l~~-~l~d~~~~vR~~~~~~l 538 (587)
+. ...+..+.. .-.+++..|+..+...|
T Consensus 545 P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 545 PS-------VALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred CC-------HHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 31 122223333 34577888887665543
No 166
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.17 E-value=0.89 Score=53.93 Aligned_cols=248 Identities=17% Similarity=0.141 Sum_probs=136.0
Q ss_pred CCcHHHHHHHHHHhccccccCCC-c-------chHhhhHHHHhhh-hcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHH
Q 007842 58 DDDDEVLLAMAEELGVFIPYVGG-V-------EHAHVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIP 128 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~l~~~~~~-~-------~~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 128 (587)
.+++++|...+..+..+..+... . ++....+..+..+ +.+.++.+|.+....+. +...+.......+.
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr 568 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLR 568 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHH
Confidence 46778888776655443332111 1 1123333333332 45788888877776666 22222222333444
Q ss_pred HHHHHhcCCCCcchhhHHhhhHhhcCCCCh----HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhH
Q 007842 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPD----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTD 202 (587)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~ 202 (587)
......++..+..+..+...++.++...+. ..+...+.....+-.+....+...++.-+..+...... ..+...
T Consensus 569 ~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~ 648 (2341)
T KOG0891|consen 569 LLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGP 648 (2341)
T ss_pred HHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence 444455566777777777777766664432 23344444444444444443444443333333322210 122233
Q ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCC----
Q 007842 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE---- 275 (587)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~---- 275 (587)
++-.+...+.+....+-..+...++.++...+.+ ...+.+++.+.+.+.|. +..-|.++.++++++...-|-.
T Consensus 649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~ 728 (2341)
T KOG0891|consen 649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPY 728 (2341)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEeccc
Confidence 3344444556677777788888888888766632 22346667776666664 4456778888999888765421
Q ss_pred ccccchHHHHHHhcCCC-hHHHHHHHHHhHHHHH
Q 007842 276 PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFC 308 (587)
Q Consensus 276 ~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~ 308 (587)
...+.++..+...++.. ...+|.++++.++..+
T Consensus 729 ~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 729 LDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred ccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 12234666666555443 4778888888888443
No 167
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.15 E-value=0.18 Score=45.44 Aligned_cols=194 Identities=15% Similarity=0.182 Sum_probs=118.6
Q ss_pred HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH-
Q 007842 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN- 248 (587)
Q Consensus 170 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~- 248 (587)
.+.+..++.......++|..++.+- . ...+.++..+..+.+......+..+...+..+...-+.. .+.+-+.+..
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~-~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~ 83 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHK-N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLL 83 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccC-c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHH
Confidence 3566677777777777777777653 1 445566666666666666555555555555554432221 1333333333
Q ss_pred --------hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 007842 249 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (587)
Q Consensus 249 --------~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
...+..|......+.++..++...++ ...++++.+...+ ++.++.++..+++++..+++.--.+ + ..
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-~-~s 159 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-F-YS 159 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-H-HH
Confidence 12345678888878888889987766 3457899999999 7888999999999999998532111 1 22
Q ss_pred HhHHHHH-hccCCcHHHHHHHHHHHHcccccc-c---hhHHHHhHHHHHHHhhcCCC
Q 007842 320 ILPCVKE-LSSDSSQHVRSALASVIMGMAPLL-G---KDATIEQLLPIFLSLLKDEF 371 (587)
Q Consensus 320 i~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~-~---~~~~~~~l~~~l~~~l~d~~ 371 (587)
.+..+.+ +-.+..+.+-...++.+..+...- . .+.+...++..+.++....+
T Consensus 160 ~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 160 AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 2333333 234556777776666655443322 1 12345567777777776655
No 168
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.11 E-value=0.38 Score=48.50 Aligned_cols=252 Identities=12% Similarity=0.119 Sum_probs=121.5
Q ss_pred HhHhHHHHHhccCC-cHHHHHHHHHHHHccccc--cchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842 318 QHILPCVKELSSDS-SQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 318 ~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (587)
..++..+..++... +...-..+...+..+..+ ++.+. ...++..+.....-. +....+-+++..+++....
T Consensus 175 ~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g--- 248 (464)
T PF11864_consen 175 SSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG--- 248 (464)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH---
Confidence 44445444443322 222234555555554332 23322 334445555443332 5666666777777653322
Q ss_pred HhhHHHHHHHHh--cC----CChHHHHHHHHHHHHHHHhhChhhh------HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 007842 395 SQSLLPAIVELA--ED----RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (587)
Q Consensus 395 ~~~~l~~l~~~~--~~----~~~~vR~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
...+..+..++ .+ ++..+-..++..++.+.-..|...+ ...++|.+...++.++..|=...+..+..
T Consensus 249 -~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ 327 (464)
T PF11864_consen 249 -HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINR 327 (464)
T ss_pred -HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHH
Confidence 23344444444 22 3444555667777776544322111 12478888888887777776667777666
Q ss_pred HH-HHhChH-----HH-hhhhHHHHHhhccC---Cc------hhHHHHHHHH---HHHhhc---ccChHHHHhhHHHHHH
Q 007842 463 LA-EEFGPE-----WA-MQHITPQVLEMINN---PH------YLYRMTILRA---ISLLAP---VMGSEITCSRLLPVVI 520 (587)
Q Consensus 463 l~-~~~~~~-----~~-~~~l~~~l~~~l~d---~~------~~~R~~a~~~---l~~l~~---~~~~~~~~~~il~~l~ 520 (587)
+. ..++.. |. .-.+++.+.+.... .. ..++...... +..+.+ ..|+ ...++..+.
T Consensus 328 ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~---~~~~~~f~~ 404 (464)
T PF11864_consen 328 LLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGP---KDKLFNFFE 404 (464)
T ss_pred HHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCcc---HHHHHHHHH
Confidence 66 444433 10 01122222222211 11 1222222222 222222 1222 355666666
Q ss_pred hhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHH
Q 007842 521 NASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT-EDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 521 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~d~~Vr~~a~~al~~l 580 (587)
+....-.+......+..=...+.- ....+.......+..+. .+...+||..|..++..|
T Consensus 405 ~~~~~lp~s~~~~vl~~~~~~~~P-s~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 405 RVHSYLPDSSALLVLFYEERSCSP-SNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHhccCCHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence 655554444333333111111111 22356666677777754 788889999999888653
No 169
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.022 Score=51.25 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=115.5
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHH
Q 007842 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357 (587)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 357 (587)
..+.-....+.+.+|+.....+..+..+.....+. ..+..++..+.+-++++...|-.+++.++..+.+..+.... +
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~ 166 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-Q 166 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34554556678888998888888888877755432 33455666777777888888888888888888877654322 1
Q ss_pred hHHHHHHHhh---cCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh----
Q 007842 358 QLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---- 430 (587)
Q Consensus 358 ~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---- 430 (587)
.+-+.+..++ .+.+.-||..|-.+|..+.....+.. +++.+.....+.++++|..+...+......+|.
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 2223333333 34567899999999998888776543 455555567788889988887777776665552
Q ss_pred hhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (587)
Q Consensus 431 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
.++...+.+.+..-..|.-+.+|.+|-..+.
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~ 273 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFVRL 273 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHHHH
Confidence 2233344555555566666666655544333
No 170
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.96 E-value=0.18 Score=48.59 Aligned_cols=140 Identities=17% Similarity=0.221 Sum_probs=69.7
Q ss_pred HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc------CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh
Q 007842 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (587)
..-|.+|...+..+++..+... .+.+...+...+. ..+|+-+.+|+..++.++........ ..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~----------Gv 293 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS----------GV 293 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT----------B-
T ss_pred CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC----------Cc
Confidence 5678889999999988765442 1233333333332 45799999999888887654311000 00
Q ss_pred cCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCC
Q 007842 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447 (587)
Q Consensus 368 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 447 (587)
.+.++ +-.+. +.+...++|.+. --.+..+-+|..+++.+..+...++++... .++|.+.+++.+
T Consensus 294 t~~~~---------~v~v~-----~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-~~~~~l~~~L~~ 357 (370)
T PF08506_consen 294 TQTNE---------LVDVV-----DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-QIFPLLVNHLQS 357 (370)
T ss_dssp S-B-T---------TS-HH-----HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-HHHHHHHHHTTS
T ss_pred ccccc---------cccHH-----HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHhCC
Confidence 00000 00000 111223344443 222344556666666666666665554433 366666666666
Q ss_pred CchHHHHHHHHHH
Q 007842 448 KVYSIRDAAANNL 460 (587)
Q Consensus 448 ~~~~vr~~a~~~l 460 (587)
++.-|+..|+.++
T Consensus 358 ~~~vv~tyAA~~i 370 (370)
T PF08506_consen 358 SSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCcchhhhhhhhC
Confidence 6666666666553
No 171
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.59 Score=47.76 Aligned_cols=454 Identities=13% Similarity=0.127 Sum_probs=230.0
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhH-HhhHHHHHHHHhcCCCCcchhhHHhhhH-hhcCCCChHHHHHHHHHHHHh-----
Q 007842 99 ETCVRDKAVESLCRIGSQMRESDL-VDWYIPLVKRLAAGEWFTARVSACGLFH-IAYPSAPDILKTELRSIYTQL----- 171 (587)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~l~~~~~~~~r~~a~~~l~-~~~~~~~~~~~~~l~~~l~~l----- 171 (587)
++.+-...+++++.....++-.-+ .+..++++..+.. ....|.+||..+- ...++.+|..+-.++..+.+.
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg 283 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG 283 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 677777777777777766554322 3346666666555 4567888887554 455667665555555554211
Q ss_pred --cCC--CChHHHHHHHHhHHHHHH-------hhcc-------ch---hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842 172 --CQD--DMPMVRRSAASNLGKFAA-------TVEP-------AH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (587)
Q Consensus 172 --~~d--~~~~vr~~~~~~l~~l~~-------~~~~-------~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
..| .++.+-......+...+- .+.. +. ....+.|.+.+.+.+++++.-......+....
T Consensus 284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 112 344444433333322211 1100 11 11225666777777776654433333332222
Q ss_pred hhc---C---h---hhhhhchHHHHHHhccC------Cc----------HHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 007842 231 KLL---E---P---QDCVAHILPVIVNFSQD------KS----------WRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (587)
Q Consensus 231 ~~~---~---~---~~~~~~l~~~l~~~~~d------~~----------~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l 285 (587)
..+ + . ....+.+...+++++-| .+ .++|...-.....++. +.++.....+-..+
T Consensus 364 ~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~-idpsl~l~~Ir~sl 442 (980)
T KOG2021|consen 364 AFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVV-IDPSLFLNNIRQSL 442 (980)
T ss_pred HHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 111 1 1 11122233444444422 11 2355544333333332 22222222222223
Q ss_pred HH---hcCCChHHHHHHHHHhHHHHHhhhCHH------------HHHHhHhHHHH--HhccCCcHHHHHHHHHHHHcccc
Q 007842 286 VR---LLRDNEAEVRIAAAGKVTKFCRILNPE------------LAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAP 348 (587)
Q Consensus 286 ~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~i~~~l~--~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
.. ..+.++|..-+.|+..+..+++..... ......++.+. ..+..+++.|.-...+.+.....
T Consensus 443 S~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k 522 (980)
T KOG2021|consen 443 SAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK 522 (980)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence 22 234567888899999999999876432 22233444443 34567788888888888777665
Q ss_pred ccchhH-HHHhHHHHHH--HhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChH-----------
Q 007842 349 LLGKDA-TIEQLLPIFL--SLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWR----------- 412 (587)
Q Consensus 349 ~~~~~~-~~~~l~~~l~--~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~----------- 412 (587)
.+..+. ..+.++..++ ..+.+.+..||..+...+.++.+.+.+. .+.+.++..+.+++..+-+.
T Consensus 523 ff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f 602 (980)
T KOG2021|consen 523 FFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF 602 (980)
T ss_pred HHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence 554322 2222222222 2345678999999999999998876543 23344444444444221111
Q ss_pred -HHHHHHHHHHHHHHh---------------hChhhhHHHHHHHHHHhcCCCchHHHHH----HHHHHHHHHHHhChH--
Q 007842 413 -VRLAIIEYIPLLASQ---------------LGVGFFDDKLGALCMQWLQDKVYSIRDA----AANNLKRLAEEFGPE-- 470 (587)
Q Consensus 413 -vR~~~~~~l~~l~~~---------------~~~~~~~~~l~~~l~~~l~d~~~~vr~~----a~~~l~~l~~~~~~~-- 470 (587)
-..-+.+.+|-+... +.+......+.+....+-+|.+..|..+ ++.+++.+.+.+...
T Consensus 603 ddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlv 682 (980)
T KOG2021|consen 603 DDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLV 682 (980)
T ss_pred cccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCc
Confidence 011122222222110 1111111223333334446766666544 445566666543211
Q ss_pred ------H------HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHH
Q 007842 471 ------W------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 471 ------~------~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l 538 (587)
+ ..+.+++.+..+.+ ...+|-+.-..++.+...+|++ +.+.+=..+..+++|.++.--.-.+..+
T Consensus 683 t~~qvg~~~vf~~~ldvil~~ls~f~k--~E~iRsavrft~hRmI~~lg~~-vlPfipklie~lL~s~d~kEmvdfl~fl 759 (980)
T KOG2021|consen 683 TENQVGNMVVFSNILDVILVTLSFFNK--FENIRSAVRFTFHRMIPILGNK-VLPFIPKLIELLLSSTDLKEMVDFLGFL 759 (980)
T ss_pred chhcccHHHHHHHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHHhcchh-hhcchHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0 12445555444332 4558888888888888888875 3343333444567787777666677777
Q ss_pred HHhhhhhchH--HHHhhHHHHH
Q 007842 539 QSLIPIVDQS--MVEKTIRPCL 558 (587)
Q Consensus 539 ~~l~~~~~~~--~~~~~i~~~l 558 (587)
.+++..+..+ .+.++.+|.+
T Consensus 760 sQLihkfk~~~~~ilnqmlppl 781 (980)
T KOG2021|consen 760 SQLIHKFKTDCYQILNQMLPPL 781 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776554 2334444433
No 172
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.11 Score=48.23 Aligned_cols=173 Identities=13% Similarity=0.043 Sum_probs=99.4
Q ss_pred CChHHHHHHHHHHHHHHHhhChh--hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhh
Q 007842 409 RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEM 483 (587)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~ 483 (587)
.+.+-|..++..+..++..+... ...-..++.++..+++.+..+|..|+.+++..++..... .+....++.+..+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 34566666777777766655321 111122333444788888888888888888888755432 1223456666665
Q ss_pred cc-CCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCC--CChhHHHHHHHHHHHhhhhhchH--HHHhhHH
Q 007842 484 IN-NPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIR 555 (587)
Q Consensus 484 l~-d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~ 555 (587)
+. +.+..+|..|+.+++.+.....+.. ..-.=+..+.+.+++ .+...+..++..+..+...-..+ ......+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 44 4456678888888888887554421 111224456666666 45566667777777766542221 2222222
Q ss_pred -HHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 556 -PCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 556 -~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
..+..+..--+.+++..+..++-.+-
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 33333556666677777666654443
No 173
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.80 E-value=0.59 Score=45.72 Aligned_cols=193 Identities=11% Similarity=0.072 Sum_probs=96.1
Q ss_pred HHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHH
Q 007842 183 AASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262 (587)
Q Consensus 183 ~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~ 262 (587)
.+.++-.+......+....+++.++..++.+....++. +...+. ..+ ....|++. +++.+++.+...++
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-----f~~~~~-~~~----~~~~~fl~-lL~~~d~~i~~~a~ 122 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-----FHDDAL-LKK----KTWEPFFN-LLNRQDQFIVHMSF 122 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-----HHHHhh-ccc----cchHHHHH-HHcCCchhHHHHHH
Confidence 34444445555556677777888887777775433322 111111 011 11223333 55567888999999
Q ss_pred HHHHHHHHHhCCCcccc----chHHHHHHhcCCC-hHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCC--cH
Q 007842 263 NQLYELCEAVGPEPTRM----DLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDS--SQ 333 (587)
Q Consensus 263 ~~l~~~~~~~~~~~~~~----~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~ 333 (587)
..++.++..-. ..... .+.+.+...++.. +...+..++.++..+...-.-. .+....++.+..++... +.
T Consensus 123 ~iLt~l~~~~~-~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 123 SILAKLACFGL-AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred HHHHHHHhcCc-cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccH
Confidence 99888875322 21112 2334445555432 3555666677777766532211 12233445555544431 34
Q ss_pred HHHHHHHHHHHcccccc-chhH-HHHhHHHHHHHhhcCCC-hHHHHHHHHhhhhhhh
Q 007842 334 HVRSALASVIMGMAPLL-GKDA-TIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQ 387 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~-~~~~-~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~ 387 (587)
+....++-++..+.=.- +.+. ....++|.+...+++.. +.|-+-++.++.++..
T Consensus 202 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 55665555554442110 1111 12346777777776543 3344444555555554
No 174
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.79 E-value=0.71 Score=46.60 Aligned_cols=143 Identities=12% Similarity=0.058 Sum_probs=76.6
Q ss_pred hHHHHHHhcCC-ChHHHHHHHHHhHHHHHh--hhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHH
Q 007842 281 LVPAYVRLLRD-NEAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357 (587)
Q Consensus 281 l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 357 (587)
++..+...+.. .....-..++..+..+.. .++.+.+ ..++..+.....-. .....+-+++.+++..-. ..
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~----g~ 249 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL----GH 249 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc----HH
Confidence 44444444322 223333677777777765 3333332 44444444432222 344444445555543211 12
Q ss_pred hHHHHHHHhhc------CCChHHHHHHHHhhhhhhhhhchhhH----H--hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007842 358 QLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLL----S--QSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (587)
Q Consensus 358 ~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~----~--~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~ 425 (587)
..+..+...+. .++..+-.+|+..+..+.-..+.+.+ . ..++|.+...++..+.++-..++..+..+.
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 23344455552 23456667888888887655533321 1 238899999888888887777777777776
Q ss_pred -HhhCh
Q 007842 426 -SQLGV 430 (587)
Q Consensus 426 -~~~~~ 430 (587)
+.++.
T Consensus 330 ~~~~~~ 335 (464)
T PF11864_consen 330 DGKYGR 335 (464)
T ss_pred hHhhhh
Confidence 44443
No 175
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.63 E-value=0.082 Score=56.76 Aligned_cols=172 Identities=12% Similarity=0.048 Sum_probs=105.9
Q ss_pred hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhhhHHHHHHHHHHhcCCCc
Q 007842 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDKV 449 (587)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~ 449 (587)
..||++.+++|+.+......+.+ ...+..+.+++.-++|++|..-+..+........ -..+...+++.+...+.|.+
T Consensus 143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ 221 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD 221 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 57999999999999887766544 5567777788888899999876665555443211 11334567788888999999
Q ss_pred hHHHHHHHHHHHHHHHHhChH------HHhhhhHHHHHhhc--cCCchhHHHHHHHHHHHh-hcccChHHH-HhhHHHHH
Q 007842 450 YSIRDAAANNLKRLAEEFGPE------WAMQHITPQVLEMI--NNPHYLYRMTILRAISLL-APVMGSEIT-CSRLLPVV 519 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l-~~~~~~~~~-~~~il~~l 519 (587)
..||..|+..+..+...+... .....++..+.++. ..+...+|.-..+.+... ...++..+. ...+.|.+
T Consensus 222 ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~ 301 (1549)
T KOG0392|consen 222 DDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL 301 (1549)
T ss_pred hHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence 999999999887776654111 11122333333221 111222333222222211 111111111 13566777
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 520 INASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 520 ~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
...+.+.-..+|.+++..+..+.+.
T Consensus 302 ~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 302 WPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777778888999999998887654
No 176
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=0.54 Score=50.54 Aligned_cols=130 Identities=17% Similarity=0.125 Sum_probs=97.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---hC-hHHHhhhhHHHHH
Q 007842 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FG-PEWAMQHITPQVL 481 (587)
Q Consensus 406 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~-~~~~~~~l~~~l~ 481 (587)
..|-.+.+|..+++.++.+.+.++.-++....+..+-..|.|.+..||...+.+|..+... .+ -+.|.+.+=..++
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 3678899999999999999999887777777888888889999999999999999999875 11 1335566666777
Q ss_pred hhc-cCCchhHHHHHHHHHHHhhc--ccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 007842 482 EMI-NNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (587)
Q Consensus 482 ~~l-~d~~~~~R~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~ 540 (587)
+|. .|-+..||..++..+..... .+. ..-+..+..++-|.++.++.++..-+..
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~-----d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSSGLLS-----DKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhcccccC-----hhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 776 56677888888776665532 222 2234456666677888888888776643
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=1.1 Score=46.20 Aligned_cols=193 Identities=14% Similarity=0.068 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhc-CCCCh
Q 007842 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC-QDDMP 177 (587)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~-~d~~~ 177 (587)
=..=|+.|+.+|..+++.+.......-+.|++..+-.| +.+++..+..+..+..+. ++++|
T Consensus 36 L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D------------------~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 36 LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD------------------YMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc------------------cCCHHHHHHHHHHHHHHHhcCcch
Confidence 34558999999999999887766556666666544332 334556666666666554 34444
Q ss_pred HHHHHHHHhHHHHHHhhccc-hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh-----hhhchHHHHHHhcc
Q 007842 178 MVRRSAASNLGKFAATVEPA-HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-----CVAHILPVIVNFSQ 251 (587)
Q Consensus 178 ~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~ 251 (587)
+|-...- .-..+...+.+. .-.+..+..+.......+..||..+++.+.++...-|.+. ..+.-+..+..++.
T Consensus 98 ~v~dds~-qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDST-QSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccch-hhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 4432211 111111111110 1124456677777777888999999999999988777642 12334556778888
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCC----ChHHHHHHHHHhHHHHHhh
Q 007842 252 DKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRI 310 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~ 310 (587)
|....+|..++-.|..+.+..+.-. .......-+...+.. ...-|-.-|+..+..+.+.
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 9999999999999988876543210 011122222222322 2245667777777776653
No 178
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.59 E-value=2.6 Score=50.40 Aligned_cols=523 Identities=17% Similarity=0.199 Sum_probs=258.0
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHhhCh------Hhh--hhhhhhhhhh--ccCCcHHHHHHHHHHhc-cccccCCCcc
Q 007842 14 LIDELKNDDIQLRLNSIRRLSTIARALGE------ERT--RKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGVE 82 (587)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~~~~~~~~------~~~--~~~l~p~l~~--~~~~~~~v~~~~~~~l~-~l~~~~~~~~ 82 (587)
+-..+..+|.+.|..+...+..+....-- ... .+.++..+.. ..+.++.+|..+...+. ++.+...
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~la--- 562 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLA--- 562 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhc---
Confidence 44456778888999887766654322211 111 3333443333 33556666666655554 2222212
Q ss_pred hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh----cCCCC--cchhh--HHhhhHhhcC
Q 007842 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWF--TARVS--ACGLFHIAYP 154 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~~~~~--~~r~~--a~~~l~~~~~ 154 (587)
.+..+-.+...+.++.-.++..+...++.++..-+ .+++|.+.... +.-.+ ..|.. +...++.+..
T Consensus 563 -Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 563 -QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII 636 (2341)
T ss_pred -CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence 12334445556678888888888888887765432 33444443211 11111 01111 1111111111
Q ss_pred C---CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHH
Q 007842 155 S---APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAA 228 (587)
Q Consensus 155 ~---~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~ 228 (587)
. ....+...++..+...+.+++..+-..+..+++.++...+. ....+.+++.+...+.|.. ..-|.++...++.
T Consensus 637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 0 01113334445555667788889999999999999998873 2344577777777777654 4567788888888
Q ss_pred HhhhcC----hhhhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHH--HHHh-cCCChHHH-HH-
Q 007842 229 LGKLLE----PQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA--YVRL-LRDNEAEV-RI- 298 (587)
Q Consensus 229 l~~~~~----~~~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~--l~~~-l~d~~~~v-r~- 298 (587)
+...-+ +....+.++..+.... ......+|..+++.+|..+..-+ ........ ..+. .....+.. +.
T Consensus 717 l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~---~~~~~~~~~~~~~~~~~~~k~~~~~~~ 793 (2341)
T KOG0891|consen 717 LESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP---YKHKVTEGTSASKISSEQIKSDIDISL 793 (2341)
T ss_pred hhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch---hHHHHHhhhhhHhhhhccccccchHHH
Confidence 766432 2223444555554433 34456789999999885443211 00000000 0111 11111100 00
Q ss_pred HHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHH-HHHHHHHccccccc--hhHHHHhHHHHHHHhhcCCChHHH
Q 007842 299 AAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS-ALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVR 375 (587)
Q Consensus 299 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~-~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr 375 (587)
.-....... .+.+.-..+..+...+.|+...... ....+...+....| ...+.+.++|.+........+..+
T Consensus 794 ~~~~~~~~~-----~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~ 868 (2341)
T KOG0891|consen 794 LESGVNPSN-----DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLR 868 (2341)
T ss_pred HHhhhhhhh-----hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchh
Confidence 000000000 1111111122334444554332222 22222222222222 233456667766665554444444
Q ss_pred HHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHH---HHHHHHHHHHHHhhChhhh--HHHHHHHHHHhcCCCch
Q 007842 376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVY 450 (587)
Q Consensus 376 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR---~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~ 450 (587)
......+....-...... ..+++.+...+.+-+|... ..+...+..+...++.++. .+...+..+........
T Consensus 869 ~f~~~q~~~~~~~~~~h~--~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s 946 (2341)
T KOG0891|consen 869 EFYFQQLTSLVAIVRQHI--RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKS 946 (2341)
T ss_pred HHHHHhhhhhhhccchhH--hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeeccccc
Confidence 444433333222221111 1234444444444443222 2233334444444433321 11222222222222222
Q ss_pred HHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC
Q 007842 451 SIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~ 526 (587)
..|......+..+.. .|. +....-+.|.+++++.++ ....|..+...++.+........+...+...+.+.+...
T Consensus 947 ~~~~~~~~~~~~~~~-~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s 1025 (2341)
T KOG0891|consen 947 KDRVVSRKVLQSLQK-FGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS 1025 (2341)
T ss_pred chHHHHHHhhHHHHh-cCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 223333333332222 222 223345677888888887 578999999999999987777667777777778888777
Q ss_pred ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHH
Q 007842 527 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 559 (587)
Q Consensus 527 ~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~ 559 (587)
+.++......++.+....+... ..+.|.+.
T Consensus 1026 -~el~~~~~~~l~~l~~~~~~~~--~i~~p~~~ 1055 (2341)
T KOG0891|consen 1026 -PELRDVIMDTLIALVKQLGKDF--AIFIPMVN 1055 (2341)
T ss_pred -hhHHHHHHHHHHHHHHhhcCce--eehHHHHH
Confidence 9999999999999888766542 23444444
No 179
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.57 Score=42.51 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHHHhhhhh-chHH-HHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 007842 524 KDRVPNIKFNVAKVLQSLIPIV-DQSM-VEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 524 ~d~~~~vR~~~~~~l~~l~~~~-~~~~-~~~~i~~~l~~l-~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.++++.+|...+++|-.++..- |.+. ....+.|++..+ ...+|+++|....+..+.+..
T Consensus 254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 3679999999999999988543 4443 345789999996 567889998877776666544
No 180
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.55 E-value=0.55 Score=42.28 Aligned_cols=194 Identities=16% Similarity=0.152 Sum_probs=112.6
Q ss_pred hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHH--
Q 007842 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-- 443 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-- 443 (587)
.-+..+++.....+++|..++..-. .....++..+..+.+.+....+..+...+..+.+.-.. .| +.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f-~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF-PFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH-HHHHHHHHHHH
Confidence 5566678888888888887776431 22345566666666666666666666666666554221 11 333333322
Q ss_pred -------hcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc-cCCchhHHHHHHHHHHHhhcc--cChHHHHh
Q 007842 444 -------WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPV--MGSEITCS 513 (587)
Q Consensus 444 -------~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~~R~~a~~~l~~l~~~--~~~~~~~~ 513 (587)
.-.+..++...+...++..++...+. ....+++.+...+ .+.+...+..+++++..+.+. ++....+.
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 11345566777766777777765444 3456788888888 677888999999999998853 22222233
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhhhh----hchHHHHhhHHHHHHHhcCCCCcc
Q 007842 514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPI----VDQSMVEKTIRPCLVELTEDPDVD 568 (587)
Q Consensus 514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~----~~~~~~~~~i~~~l~~l~~d~d~~ 568 (587)
.+.+.+ -.+..+.+-...+..+..+... -..+.+...++..+-++....+.+
T Consensus 163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 163 VLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 333333 2334444444444433332211 122356677888888887777743
No 181
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.54 E-value=0.037 Score=46.88 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHH
Q 007842 101 CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180 (587)
Q Consensus 101 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr 180 (587)
.||..|+.+|..+++..++..+..++--++ -+.+... ...-.+++.-++.|+++.+|
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~ll----P~~~~~~-------------------~~~~~sLlt~il~Dp~~kvR 57 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALL----PDSVLQG-------------------RPATPSLLTCILKDPSPKVR 57 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHC----CCCCCcC-------------------CCCCcchhHHHHcCCchhHH
Confidence 379999999999999977765444333222 1110000 00112344456789999999
Q ss_pred HHHHHhHHHHHHhh
Q 007842 181 RSAASNLGKFAATV 194 (587)
Q Consensus 181 ~~~~~~l~~l~~~~ 194 (587)
.+++.++..+....
T Consensus 58 ~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 58 AAAASALAALLEGS 71 (182)
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999988764
No 182
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.46 E-value=0.71 Score=43.32 Aligned_cols=57 Identities=9% Similarity=0.172 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC------CchhHHHHHHHHHHHhhcccC
Q 007842 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN------PHYLYRMTILRAISLLAPVMG 507 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------~~~~~R~~a~~~l~~l~~~~~ 507 (587)
...+...+++|+++......+ ...+.+|.+.+++.. ..+......++|+-.+..+.|
T Consensus 255 e~rkL~lLK~lAEMss~ttaq-~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 255 EERKLDLLKALAEMSSYTTAQ-AARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHhCccchHH-HHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777654222 345566666665432 234445555566555554444
No 183
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.42 E-value=0.84 Score=42.86 Aligned_cols=230 Identities=16% Similarity=0.129 Sum_probs=110.9
Q ss_pred hhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHH
Q 007842 143 VSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLA 222 (587)
Q Consensus 143 ~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a 222 (587)
..|...++.++++++ +...+.+..-..+|.|.+..||+.|+.-|..++.. +..+.+.+.+.++++ .+.
T Consensus 42 ~lasq~ip~~fk~fp-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn-------k~s 109 (460)
T KOG2213|consen 42 RLASQFIPRFFKHFP-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN-------KAS 109 (460)
T ss_pred HHHHHHHHHHHhhCc-hhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH-------HHH
Confidence 345566666666663 34455666667788888888888888888888764 344555555555554 111
Q ss_pred HHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHH
Q 007842 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRI 298 (587)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~ 298 (587)
+..|- .+... .+..+|..+...|..=...++. ......++..+...+.|-..+--.
T Consensus 110 l~~Lf-------------------~~~~~-~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~ 169 (460)
T KOG2213|consen 110 LTGLF-------------------GQIEV-GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFT 169 (460)
T ss_pred HHHHH-------------------hhhhh-hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 11111 11111 1334444444433322211111 122345666666666665554444
Q ss_pred HHHHhHHHHHhh---hCHHHHHHhHhHHHHHh-----ccCCcHHHHHHHHHHH----HccccccchhHHHHhHHHHHHHh
Q 007842 299 AAAGKVTKFCRI---LNPELAIQHILPCVKEL-----SSDSSQHVRSALASVI----MGMAPLLGKDATIEQLLPIFLSL 366 (587)
Q Consensus 299 ~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~-----~~d~~~~vr~~a~~~l----~~l~~~~~~~~~~~~l~~~l~~~ 366 (587)
..+..|+.+... -|++.. .++......+ +.-++..+-.-.+.++ .-++...+...+..++-..++..
T Consensus 170 lfm~~L~~lk~~~~k~~~a~l-qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~ 248 (460)
T KOG2213|consen 170 LFMDILASLKSLQTKAGEARL-QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH 248 (460)
T ss_pred HHHHHHHhhhcccCCCCHHHH-HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc
Confidence 444445443322 222221 2333333222 2223333433344443 33444333333333222222111
Q ss_pred hcC-CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh
Q 007842 367 LKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (587)
Q Consensus 367 l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~ 406 (587)
--| ...+.+...+++|+.++..-..+.. ...+|.+.+++
T Consensus 249 ~fdkl~e~rkL~lLK~lAEMss~ttaq~a-~q~Lpsi~elL 288 (460)
T KOG2213|consen 249 HFDKLTEERKLDLLKALAEMSSYTTAQAA-RQMLPSIVELL 288 (460)
T ss_pred ccccchHHHHHHHHHHHHHhCccchHHHH-HHHHHHHHHHH
Confidence 112 2256777788888888876644332 45666666654
No 184
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.42 E-value=0.042 Score=40.65 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=55.0
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhc-cchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh
Q 007842 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (587)
Q Consensus 166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
......++|+.+-||..+...|..++..-. .....+.++.++...++|+++.|...|++++..++...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 344455678888899998888888888765 3445677888888888999999999999999998887653
No 185
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.35 E-value=0.098 Score=44.00 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCCchhHHHHHHHHHHHh
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL 502 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l 502 (587)
+.++|+++..+.+....-|-.|...+..+...-+.+. ...++++.+...++..+..+..+++.++..+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666665522221 1233444444445555555555555555555
No 186
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.31 E-value=1.1 Score=43.27 Aligned_cols=222 Identities=16% Similarity=0.108 Sum_probs=122.4
Q ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhh-hhchHHHHHH-hccC-CcHHHHHHHHHHHHHHHHHh-CCCcc
Q 007842 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDC-VAHILPVIVN-FSQD-KSWRVRYMVANQLYELCEAV-GPEPT 277 (587)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~~l~~-~~~d-~~~~vR~~a~~~l~~~~~~~-~~~~~ 277 (587)
+.+-+..++-+++..||.++..++..+...... ... .-++--++.. +..| ++..-|..|.+.+-.+...- |.+..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 344444344344488999998888876543221 111 1112222222 2233 34567899999999888763 33445
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch-----
Q 007842 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----- 352 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----- 352 (587)
+..++..++...+++++..|..|+..+.+++-.-+.-.....-+..+.+.+.|....+-..++.++-.+......
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 667888899999999999999999999998865433222233445555555555545656666655554433211
Q ss_pred -hHHHHhHHHHHHHh----hcCCCh-HHHHHHHHhhhhhhhhh------chhhHHhhHHHHHHHHhcCCChHHHHHHHHH
Q 007842 353 -DATIEQLLPIFLSL----LKDEFP-DVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420 (587)
Q Consensus 353 -~~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~------~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~ 420 (587)
..-.+.++..+... .++... +--..+..++..+.+.- +.+.+ ..+..+...+.-++..+|..++..
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildl 263 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDL 263 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11123333333333 222221 23334444555444321 11111 234555566677777888887777
Q ss_pred HHHHHH
Q 007842 421 IPLLAS 426 (587)
Q Consensus 421 l~~l~~ 426 (587)
+-.+..
T Consensus 264 l~dllr 269 (371)
T PF14664_consen 264 LFDLLR 269 (371)
T ss_pred HHHHHC
Confidence 666554
No 187
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.65 Score=43.27 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=104.7
Q ss_pred ChHHHHHHHHHhHHHHHhhhCHHH--HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--H-HHHhHHHHHHHh
Q 007842 292 NEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--A-TIEQLLPIFLSL 366 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~ 366 (587)
.+.+-+..|+..|..+++.++... .....+..+...+++.+..+|..|++.++..++.-++. . +-...++.+...
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 346667778888888887776542 11223444445778888888888888888877655431 1 112244555555
Q ss_pred hc-CCChHHHHHHHHhhhhhhhhhchh--hH-HhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhC--hhhhHHHHH
Q 007842 367 LK-DEFPDVRLNIISKLDQVNQVIGID--LL-SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLG--VGFFDDKLG 438 (587)
Q Consensus 367 l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~-~~~~l~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~ 438 (587)
+. +.+..+|..|+.+++.++...... .+ .-.-...+...+++ .+.+.+..++..++.+...-. .+.......
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 44 556788899999999988765322 11 01113445555665 556666777777777765432 111222222
Q ss_pred -HHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842 439 -ALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (587)
Q Consensus 439 -~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
..+..+...-+++++++++.++-.....+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 22344556667778888877776666543
No 188
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.20 E-value=0.033 Score=46.48 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=71.9
Q ss_pred hhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHhh-h
Q 007842 239 VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRI-L 311 (587)
Q Consensus 239 ~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~-~ 311 (587)
.+.+++.+.+++.. .+|.+|+.+++.+|.++.. .+ .-......... +.+........ ...... .
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP-----~~~k~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~ 78 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL-DP-----YKHKSIQKSLDSKSSENSNDESTDISL---PMMGISPS 78 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-Cc-----HHHhcccccCCccccccccccchhhHH---hhccCCCc
Confidence 45566666666543 4688888888888876642 10 00000000000 11111111111 000000 1
Q ss_pred CHHHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842 312 NPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 312 ~~~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (587)
.++.+...++..+.+.++|++- .-+.+++.++..+....|. -.+.++++|.+...++..++..|+..++.|+.+..
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2334444556666677777653 3333455555555544432 34677788888888887767777777777776654
No 189
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.17 E-value=0.58 Score=45.14 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=46.1
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
++.+.......+.+++.-...++ ...++.++..+.+.++|..+.+|+..+..++....
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~-~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLS-SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 35677788888888888777763 33457799999999999988899999999888765
No 190
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.13 E-value=0.16 Score=49.03 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=58.8
Q ss_pred HHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHH
Q 007842 24 QLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVR 103 (587)
Q Consensus 24 ~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr 103 (587)
+.|.-.++.|..+...--.....+.+.|++.+ +.++..+..+..+++.....+ +.+....++..+.+.+.+..+.+|
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSK--ESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHH
Confidence 45666666565443211123333455565543 456677777777776654444 235567788889999999999999
Q ss_pred HHHHHHHHHHHh
Q 007842 104 DKAVESLCRIGS 115 (587)
Q Consensus 104 ~~a~~~l~~l~~ 115 (587)
+.++.+++....
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 191
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.13 E-value=0.06 Score=44.99 Aligned_cols=148 Identities=13% Similarity=0.097 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-ccCCchhHHHHHHHHHHHhhcccChHHH
Q 007842 434 DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEIT 511 (587)
Q Consensus 434 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~~R~~a~~~l~~l~~~~~~~~~ 511 (587)
.+.+++.++++++. .++.+|..+++++|.+.. +.+..+. .+....-.. ..+.+...........+. . ....+++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~ee~y 83 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDISLPMMGI-S-PSSEEYY 83 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhhHHhhccC-C-CchHHHH
Confidence 45677777776643 458888888888887653 2221111 000000000 011111111211111110 0 0233445
Q ss_pred HhhHHHHHHhhcCCCCh-hHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 512 CSRLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 512 ~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
...++..+.+.++|++- .-+..++.++..+....+.. .+.+.++|.+.......+...|....+-|+.+..+++
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk 160 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK 160 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 56667778888888743 34556788888877665554 5677888888886665555888887777777766653
No 192
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.08 E-value=1.4 Score=43.54 Aligned_cols=209 Identities=10% Similarity=0.090 Sum_probs=100.6
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-H-HHHHhHhHH
Q 007842 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E-LAIQHILPC 323 (587)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~i~~~ 323 (587)
..|++|.--..+.+.+..+....+.+. ....++-.++.++.++|+.-|......+..+-..+.. . .+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456788888888888888877654433 3446788889999999999999988888887654432 1 222333333
Q ss_pred HHHhccC-CcHHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCC-hHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842 324 VKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 324 l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~ 398 (587)
+.+.+.+ ....--..+.+.++.+...+. ++.....+...+..+.+... .........++..+...- ..+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence 4433332 222233344444444444332 22233333333444444332 122223333333332211 0111222
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHH---HHHHHhcCCCchHHHHHHHHHH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG---ALCMQWLQDKVYSIRDAAANNL 460 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l 460 (587)
+..+...---.+..-....+..++.+...++++.+..... ..+-..+++++..|-+.|+..+
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3333333233344444455666666666665555543333 3334456677777766666554
No 193
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.00 E-value=0.21 Score=42.05 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhH---HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
..++|.+.+-+.+...-.|..+.+.+..+...-+.+... +.+++.+...+...+.+|..+++.+|..++.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 678999999888888888888888888888874444432 4566667788899999999999999999943
No 194
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.97 E-value=0.11 Score=38.55 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=41.9
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcccC-hHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 479 QVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
..+..++|+...+|..++..+.++...-. .....+.++..+...++|+++-|=.++++++..++...+
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 34444566666666666666666665444 222345666666666777777777777777777665543
No 195
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.92 E-value=0.22 Score=47.73 Aligned_cols=132 Identities=20% Similarity=0.328 Sum_probs=76.0
Q ss_pred hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCC-------ChHHHHHHHHHHHHHHHh--hChhhhHHH
Q 007842 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDDK 436 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~-------~~~vR~~~~~~l~~l~~~--~~~~~~~~~ 436 (587)
.+.+.+...|..++..|.. .-|. ..++|.+..++.+. +...-...++.+..+... +..+.+...
T Consensus 186 a~~~~~~~~r~~aL~sL~t---D~gl----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~ 258 (343)
T cd08050 186 ALVGSNEEKRREALQSLRT---DPGL----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ 258 (343)
T ss_pred HHhCCCHHHHHHHHHHhcc---CCCc----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH
Confidence 3334455566665555443 2222 34455555444321 233322333333333321 223344455
Q ss_pred HHHHHHHhc----------CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc--hhHHHHHHHHHHHh
Q 007842 437 LGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLL 502 (587)
Q Consensus 437 l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~~R~~a~~~l~~l 502 (587)
++|.++.++ .++.|.+|..|+..++.+++.++... ....++..+.+.+.|+. ...+..|+..+..+
T Consensus 259 Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 259 LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 777777655 35779999999999999999887753 45666666666666653 34578888888877
Q ss_pred hc
Q 007842 503 AP 504 (587)
Q Consensus 503 ~~ 504 (587)
+.
T Consensus 339 G~ 340 (343)
T cd08050 339 GP 340 (343)
T ss_pred Cc
Confidence 64
No 196
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=2.6 Score=43.64 Aligned_cols=169 Identities=17% Similarity=0.246 Sum_probs=109.2
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHh--ChH
Q 007842 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEF--GPE 470 (587)
Q Consensus 394 ~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~--~~~ 470 (587)
+.+.++|.+. .-.+...-+|..++-.++..+..--+....+.+-..+.+++.|. +.-||.+++.++..++... .++
T Consensus 485 l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 485 LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 3445566655 11223344678888888888765444455566677788899998 7889999999999988743 333
Q ss_pred HH---hhhhHHHHHhhccC-CchhHHHHHHHHHHHhhcccChHH--H---HhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 471 WA---MQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--T---CSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 471 ~~---~~~l~~~l~~~l~d-~~~~~R~~a~~~l~~l~~~~~~~~--~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
.| .+.+...+..++.. .....|...+..++.+....+.-. + .-.++|.+.+-.+ +.+-.|.+.+.++.++
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~l 642 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNL 642 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHH
Confidence 22 23344444444432 245678888888888876555421 1 2345566666444 6888999999999999
Q ss_pred hhhhchH--HHHhhHHHHHHHhcCCC
Q 007842 542 IPIVDQS--MVEKTIRPCLVELTEDP 565 (587)
Q Consensus 542 ~~~~~~~--~~~~~i~~~l~~l~~d~ 565 (587)
...+|.+ .+...+.|.+. +..|+
T Consensus 643 V~alg~qS~~~~~fL~pVIe-l~~D~ 667 (978)
T KOG1993|consen 643 VNALGAQSFEFYPFLYPVIE-LSTDP 667 (978)
T ss_pred HHHhccCCccchHHHHHHHH-HhcCC
Confidence 9988776 34455666654 44554
No 197
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.86 E-value=1 Score=42.84 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=90.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHhhChhhhH--HHHHHHHHHhcCC----CchHHHHHHHHHHHHHHH--HhChHHHhh
Q 007842 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD----KVYSIRDAAANNLKRLAE--EFGPEWAMQ 474 (587)
Q Consensus 403 ~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~--~~~~~~~~~ 474 (587)
..++..+++.++..++..+..+...-+..... ...++.++.++.+ ++.+++..++.+++.+.+ .+..-+...
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 33667778888888888888776654322221 2445555555543 555677788888888864 222233345
Q ss_pred hhHHHHHhhc-----cC--CchhHHHHHHHHHHHhhc--ccChHHHHhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhh
Q 007842 475 HITPQVLEMI-----NN--PHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 475 ~l~~~l~~~l-----~d--~~~~~R~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~ 544 (587)
..++.+...+ .+ .+.+....++.++=-+.- ..-.......++|.+.+.+++ ....|-..++.++.++...
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 5566666655 12 234555555554443321 111122234477777777654 3445555677777777765
Q ss_pred hch----HHHHhhHHHHHHHhcCC--CCccHHHH
Q 007842 545 VDQ----SMVEKTIRPCLVELTED--PDVDVRFF 572 (587)
Q Consensus 545 ~~~----~~~~~~i~~~l~~l~~d--~d~~Vr~~ 572 (587)
... ......+++.+..+... .|+++..-
T Consensus 271 ~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 271 APKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 442 34556677888777543 35565443
No 198
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=95.79 E-value=2.6 Score=42.90 Aligned_cols=150 Identities=18% Similarity=0.083 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHH--------Hhhh------CCchhHHHHHHH
Q 007842 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE--------DLTQ------DDQDSVRLLAVE 224 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~--------~l~~------d~~~~vr~~a~~ 224 (587)
.+.+.+++++..-..+.+..+|..++..++++.+.++-.. -..++.++. ..++ +.++.+-..++.
T Consensus 242 ~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l-~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~ 320 (993)
T COG5234 242 IYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNL-AESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAIL 320 (993)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhccccc-HHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHH
Confidence 3677888888888888999999999999999998875321 111222221 1111 233444444443
Q ss_pred HHHHHhhhcChhhhhhchHHHHHHhccCC--------cHHHHHHHHHHHHHHHHHhCCCcccc---chHHHHHH-hcCCC
Q 007842 225 GCAALGKLLEPQDCVAHILPVIVNFSQDK--------SWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVR-LLRDN 292 (587)
Q Consensus 225 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--------~~~vR~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~-~l~d~ 292 (587)
.++ ++...+-+-..-.+.|++.+.++-. ...+|.++.-.+-.+.....+...+. .+...++. .+-|+
T Consensus 321 ~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDp 399 (993)
T COG5234 321 FFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDP 399 (993)
T ss_pred HHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCc
Confidence 333 4433322211112555555544322 22456665555544443322222211 24444444 66799
Q ss_pred hHHHHHHHHHhHHHHHhh
Q 007842 293 EAEVRIAAAGKVTKFCRI 310 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~ 310 (587)
+-.+|.+|..++-++...
T Consensus 400 el~vRr~a~Aal~E~iGR 417 (993)
T COG5234 400 ELNVRRAATAALFEVIGR 417 (993)
T ss_pred hhhhhhHHHHHHHHHhcc
Confidence 999999999887765443
No 199
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=2.9 Score=43.03 Aligned_cols=143 Identities=8% Similarity=0.068 Sum_probs=93.5
Q ss_pred hhHHHHHHHHhc-----C---CChHHHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 007842 396 QSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (587)
Q Consensus 396 ~~~l~~l~~~~~-----~---~~~~vR~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
+.+++.+.+.++ + .+.+-...++..+..+...+. ...+...+++.+...++++.--.|..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 556666666551 2 345666677777777766332 122334567777778899999999999999998
Q ss_pred HHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC--hH--HHHhhHHHHHHhhcCCCChhHHHHHHHHH
Q 007842 463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SE--ITCSRLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 463 l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~--~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l 538 (587)
+...+.......++.......+++.+..++..|.-++..+..... .. ...+..+..++.+.++-+-.+=..+++.+
T Consensus 487 ~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f 566 (970)
T COG5656 487 IEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF 566 (970)
T ss_pred HHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHH
Confidence 866665554556667777777888888899999999998875322 11 12344555666666655555555555444
No 200
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.57 E-value=2.6 Score=41.34 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=66.7
Q ss_pred hcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcCh-hhh-hhchHH
Q 007842 171 LCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP-QDC-VAHILP 244 (587)
Q Consensus 171 l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~ 244 (587)
+++.++..+...++..+..++..-.. ....+.+.+.+...++.. +......++.++..+...-.- ..+ ....++
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~ 188 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVP 188 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHH
Confidence 55567788888888888888754221 112233444444444332 344555667777766543221 111 122344
Q ss_pred HHHHhccC-C-cHHHHHHHHHHHHHHHHH--hCCCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHh
Q 007842 245 VIVNFSQD-K-SWRVRYMVANQLYELCEA--VGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR 309 (587)
Q Consensus 245 ~l~~~~~d-~-~~~vR~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~ 309 (587)
.+...++. . +......++-++-.+.-. .-.......++|.+...+++.. ..|-+.++.++..+..
T Consensus 189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 44444332 1 334455554444333211 0011122457777777776543 3333334444555444
No 201
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.50 E-value=2.9 Score=41.35 Aligned_cols=254 Identities=9% Similarity=0.066 Sum_probs=131.4
Q ss_pred ccCCcHHHHHHHHHHHHccccccchhH----HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--hhHHhhHHHH
Q 007842 328 SSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPA 401 (587)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~ 401 (587)
..+++|.-...+.+.+..+....+.+. +...++-.++.++.++++.-|......+..+...... ..+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345666655555555555544433222 3445666677788888888888877777776654422 1223334444
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHhChHHHhhhh
Q 007842 402 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSI-RDAAANNLKRLAEEFGPEWAMQHI 476 (587)
Q Consensus 402 l~~~~~~-~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~l 476 (587)
+.+++.+ ....--..+++.++.+.+.+. ++.....+...++.+.+.+.... -..-..++..++..-. . ....+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~-l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-S-LAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-G-GHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-h-hHHHH
Confidence 4444432 233333445666666666543 22222333333444444443222 3344444444443211 1 22333
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH---HhhHHHHHHhhcCCCChhHHHHHHHHHHHh--hhhhc--hHH
Q 007842 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSL--IPIVD--QSM 549 (587)
Q Consensus 477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l--~~~~~--~~~ 549 (587)
+..++..-=-.+..-....+.-+..+...+++..+ ...++..+.+++++++..|-..|+..+.+= ...+. ...
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~ 336 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV 336 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence 44444332234556666777888888887776554 345666777788999999988887766431 21111 112
Q ss_pred HHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHh
Q 007842 550 VEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 550 ~~~~i~~~l~~l-~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
....+.|.|.+. .+.=...||..|..++..+.++
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 334455555553 2344678999999999988764
No 202
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=95.47 E-value=3.5 Score=42.10 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=45.3
Q ss_pred HHHhhhhHHHHHhhccCC----chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 470 EWAMQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 470 ~~~~~~l~~~l~~~l~d~----~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
+.+.+.++..+.+...|. ...+|.-|++.+..+... .. ...-+.+.+.+-|+.+.+|.-+-++..++.
T Consensus 686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k--D~---~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK--DS---SGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc--cc---cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 346677777777776654 356888888888776421 10 122346777888899999977777776653
No 203
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=4.8 Score=43.76 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=94.8
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cC-hHHHHhhHH
Q 007842 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MG-SEITCSRLL 516 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~-~~~~~~~il 516 (587)
+++...|-.+.+|.-++..||.++..++.-|+.+..+.++-=++.|.+..||..++.+|..+... .+ -+.+..++-
T Consensus 292 FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 292 FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred eeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 34455899999999999999999999999888888888887789999999999999999999875 22 133445555
Q ss_pred HHHHhhc-CCCChhHHHHHHHHHHHhhh--hhchHHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 007842 517 PVVINAS-KDRVPNIKFNVAKVLQSLIP--IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ 575 (587)
Q Consensus 517 ~~l~~~l-~d~~~~vR~~~~~~l~~l~~--~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~ 575 (587)
.-++.+. .|-+..||...+..+..... .+.. +.+. .+..+.-|..+.++..|..
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d----~di~-~Vy~Li~d~~r~~~~aa~~ 428 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSD----KDIL-IVYSLIYDSNRRVAVAAGE 428 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhcccccCh----hHHH-HHHHHHhccCcchHHHHHH
Confidence 5555555 66677888877777765532 2222 2233 3345667888888777654
No 204
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.23 E-value=3 Score=39.94 Aligned_cols=379 Identities=10% Similarity=0.056 Sum_probs=183.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc-------hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC
Q 007842 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-------HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (587)
..+++.+.+..++++.+|-..++.++|+++....+. .-...++..+...+..+++.--+-..-..+.+.+..-
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 456777888888889999999999999988653221 0112344555555554444322222222222222221
Q ss_pred h-hhh-----hhchHHHHHHhcc--CCcHHHHHHHHHHHHHH----HHHhCCCccccchHHHHHHhcCC-ChHHHHHHHH
Q 007842 235 P-QDC-----VAHILPVIVNFSQ--DKSWRVRYMVANQLYEL----CEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAA 301 (587)
Q Consensus 235 ~-~~~-----~~~l~~~l~~~~~--d~~~~vR~~a~~~l~~~----~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~ 301 (587)
. +.. .-.+++.+..... -.+...-....-.++.+ ++.+.+-.....+.-.+.+++.. -+++.+..++
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 1 111 1113333322221 01111111111111111 11111111111232333333322 2355666666
Q ss_pred HhHHHHHhhh------CHHHHHHhHhHHHHHhccCCcHH----HHHHHHHHHHccccccchhHH-----HHhHHHHHHHh
Q 007842 302 GKVTKFCRIL------NPELAIQHILPCVKELSSDSSQH----VRSALASVIMGMAPLLGKDAT-----IEQLLPIFLSL 366 (587)
Q Consensus 302 ~~l~~l~~~~------~~~~~~~~i~~~l~~~~~d~~~~----vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l~~~ 366 (587)
+.+...++.- -.....+.++..+.+.-.+.+.. .-..+++....+. .|.+.. .++++..+...
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll--tGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL--TGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh--cCchHHHHHhcCcHHHHHHHHH
Confidence 6666655521 11122333444444332222211 1111222211111 133321 23477888888
Q ss_pred hcCCChHHHHHHHHhhhhhhhhhc------hhhHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhh-ChhhhH-HHH
Q 007842 367 LKDEFPDVRLNIISKLDQVNQVIG------IDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-DKL 437 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~-~~~~~~-~~l 437 (587)
+.+.+.+....+.-+++.+++.-. .+.+...++..+.+ --.|.+-++..+++.++..+.--. .+..+. ..+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv 403 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV 403 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence 998889999999999999876432 12233333443332 224566777777877777664221 222222 224
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH------HhhhhHHHHHhhccCCchh-HHHHHHHHHHHhhcccChHH
Q 007842 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW------AMQHITPQVLEMINNPHYL-YRMTILRAISLLAPVMGSEI 510 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~-~R~~a~~~l~~l~~~~~~~~ 510 (587)
...++..++-..+.|...-..++..+.. +.+. -...++..+.+..+.+++. +--.+.+.+..+.++...+.
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d--~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRD--SQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHh--chHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 4456666677777787776666665543 1111 1256778888888888765 55555555555554321111
Q ss_pred H-----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 511 T-----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 511 ~-----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
+ ....+...+.++...+-+....++-++..+...
T Consensus 482 v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 482 VILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred hHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 0 122344555555566667777777776665543
No 205
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=95.19 E-value=0.39 Score=41.64 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=60.6
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHH
Q 007842 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 441 (587)
...++-.....-..++..++.+...+|... ....++..+.++-.+++...|..+=.+++...+.+|++.+.+ ++|+-
T Consensus 6 e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLn 84 (198)
T PF08161_consen 6 ESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLN 84 (198)
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCC
Confidence 334443444445555556666665555432 223334444455566677788888888888888888877654 34432
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 007842 442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481 (587)
Q Consensus 442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 481 (587)
+.. .+....-|.-.+-.|..-.....-.+|.+.++|...
T Consensus 85 l~~-~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 85 LDN-ADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLAR 123 (198)
T ss_pred ccC-CCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHH
Confidence 211 222223333333333333333333455566666544
No 206
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=95.11 E-value=2 Score=37.29 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhH
Q 007842 414 RLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLY 491 (587)
Q Consensus 414 R~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~ 491 (587)
-..++..++.+...+|... +...++..+-.+-.+++...|..+-.+++..++..|++.+.+ ++|.-.+. .+....-
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~ 94 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPG 94 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcc
Confidence 3345555666666665431 223344445555677778999999999999999999986543 34422211 2223344
Q ss_pred HHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC------CCChhHHHHHHHHH-HHhhhhhch-----HHHH---hhHHH
Q 007842 492 RMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVL-QSLIPIVDQ-----SMVE---KTIRP 556 (587)
Q Consensus 492 R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~------d~~~~vR~~~~~~l-~~l~~~~~~-----~~~~---~~i~~ 556 (587)
|.-.+-.+..-.....-.++.++++|....+-+ .....+.....+++ .++..-++. .+.. ..+-+
T Consensus 95 raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~ 174 (198)
T PF08161_consen 95 RAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAK 174 (198)
T ss_pred cchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHH
Confidence 555555555555555556677888886655421 12223333333333 222222211 1222 45566
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHH
Q 007842 557 CLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 557 ~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
.|.+.+.|. ++.|...++||..+
T Consensus 175 ~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 175 LLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHhcC-cchHHHHHHHHHHH
Confidence 666666664 89999999999876
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.09 E-value=0.11 Score=43.26 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=78.6
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH-----HHHHHHHHHHHh
Q 007842 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL 171 (587)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l 171 (587)
...+.+|..+.-++.++. ....+...+.+.+++.....+........++..+..+++..++- ..+.+.+.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 456788999999998886 44445567778888888887665567777888888888876432 234556666666
Q ss_pred cC--CCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhh-CCchh-HHHHHHHHH
Q 007842 172 CQ--DDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQ-DDQDS-VRLLAVEGC 226 (587)
Q Consensus 172 ~~--d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~-d~~~~-vr~~a~~~l 226 (587)
+. .++..+...+++.+..-+..-.- ........+++..+.+ ++++. +|..|+-+|
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 65 56666777776666654432111 2234445556666663 33333 454444333
No 208
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=5.4 Score=42.02 Aligned_cols=358 Identities=12% Similarity=0.070 Sum_probs=188.2
Q ss_pred HHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCc-----hhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc---
Q 007842 179 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-----DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--- 250 (587)
Q Consensus 179 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--- 250 (587)
-|+....++....+.++ +...+.+...+.++..|.+ ..+-.+++..+..+++.++... +.-+|-+...+
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi 516 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence 36666666666666665 5556667777777776554 4556678888888888887642 12234333332
Q ss_pred --cCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHH
Q 007842 251 --QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVK 325 (587)
Q Consensus 251 --~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~ 325 (587)
+-.++..-..+...+|..+..+++.. ..+..+|.+.+.+..++. -..+...+..+++.+..+ .+...++....
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 22367778888999999999887643 345678888888864433 344566688888877554 33344444444
Q ss_pred HhccCC--cHHHHHHHHHHHHccccccchhHHHHh---HHHHHHH----hhcC--CChHHHHHHH---Hhhhhhhhhhch
Q 007842 326 ELSSDS--SQHVRSALASVIMGMAPLLGKDATIEQ---LLPIFLS----LLKD--EFPDVRLNII---SKLDQVNQVIGI 391 (587)
Q Consensus 326 ~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~----~l~d--~~~~vr~~a~---~~l~~l~~~~~~ 391 (587)
..+... ....|..+..++|.+.+...++....+ ++..+.. .+.. +.++-+...+ .++..+...+..
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~ 674 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN 674 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 444332 356788888888888776655443222 2222222 2221 1222222222 223333222110
Q ss_pred ----------------------hhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhhHH----HHHHHHHH
Q 007842 392 ----------------------DLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQ 443 (587)
Q Consensus 392 ----------------------~~~~~~~l~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~ 443 (587)
-.+...++|.+...+. -.+..+-.+++.....-.+..+.+ |.. .+.+.+..
T Consensus 675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r 753 (982)
T KOG2022|consen 675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVR 753 (982)
T ss_pred CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHH
Confidence 0233456666665443 233444455444444333444444 433 33444444
Q ss_pred hcCCCchHHHHHHHHHHHHHH--HHhChHHH-------hhhhHHHHHhhcc----CCchhHHHHHHHHHHHhhcccCh--
Q 007842 444 WLQDKVYSIRDAAANNLKRLA--EEFGPEWA-------MQHITPQVLEMIN----NPHYLYRMTILRAISLLAPVMGS-- 508 (587)
Q Consensus 444 ~l~d~~~~vr~~a~~~l~~l~--~~~~~~~~-------~~~l~~~l~~~l~----d~~~~~R~~a~~~l~~l~~~~~~-- 508 (587)
+...+.. +...+...+ ..++.+.. ....+...+.+++ ..++.+-...+.++..+.+..+.
T Consensus 754 ~~~~~~a-----~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~ 828 (982)
T KOG2022|consen 754 FLTSCLA-----VTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFL 828 (982)
T ss_pred hccchHH-----HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcc
Confidence 3332211 111111111 11111110 0111222222222 22445555566666666553321
Q ss_pred ----HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 509 ----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 509 ----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
..+...+++.-..+++.+.+-.-.++++.+..+..+.+.
T Consensus 829 ~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 829 EPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred ccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 224566777888888888888777888888887766544
No 209
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.99 E-value=0.73 Score=42.92 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---Hh-----hhhHHHHHhhcc--------CCchhHHHHHHHH
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AM-----QHITPQVLEMIN--------NPHYLYRMTILRA 498 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~-----~~l~~~l~~~l~--------d~~~~~R~~a~~~ 498 (587)
+-++|.++.++.|.+..+|..++.++..+........ +. +-+.+.+...+. +....+=..+..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4567777888888888888888888888777554332 11 222233333332 3445566667777
Q ss_pred HHHhhccc---Ch----HHH----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCC
Q 007842 499 ISLLAPVM---GS----EIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP 565 (587)
Q Consensus 499 l~~l~~~~---~~----~~~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~ 565 (587)
+-.+.... +. ... .+.++..+....+-+.+.+|...++.+..++..+|.. .+.+.++|.+.+.+.++
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 77775421 11 111 1222222222222346899999999999999988876 56788999999988877
Q ss_pred C
Q 007842 566 D 566 (587)
Q Consensus 566 d 566 (587)
+
T Consensus 278 f 278 (282)
T PF10521_consen 278 F 278 (282)
T ss_pred C
Confidence 5
No 210
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.90 E-value=4 Score=39.61 Aligned_cols=226 Identities=15% Similarity=0.045 Sum_probs=122.4
Q ss_pred hhhchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHH-HHhcCC-ChHHHHHHHHHhHHHHHhhh-
Q 007842 238 CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAY-VRLLRD-NEAEVRIAAAGKVTKFCRIL- 311 (587)
Q Consensus 238 ~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l-~~~l~d-~~~~vr~~a~~~l~~l~~~~- 311 (587)
.+....+.+.. +++|+ ..||.++.+.+-.+...... .....++-..+ ..+-+| ....-|..|++.+..+.+.-
T Consensus 22 ~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~ 100 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK 100 (371)
T ss_pred hHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC
Confidence 34445555554 44444 99999999998776642110 00000111111 222233 34567899999999888763
Q ss_pred CHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch
Q 007842 312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (587)
Q Consensus 312 ~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (587)
|.+.+...++..+.....+++.+.|..+.+.+.+++-.-+.-.....-+..+.+.+.|+..++....+.++-.+...-..
T Consensus 101 ~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 101 GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 33344456778888888899999999999999988754333222223345556666665445555555554444332111
Q ss_pred ------hhHHhhHHHHHHHHh---cCCCh--HHHHHHHHHHHHHHHhhC------hhhhHHHHHHHHHHhcCCCchHHHH
Q 007842 392 ------DLLSQSLLPAIVELA---EDRHW--RVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRD 454 (587)
Q Consensus 392 ------~~~~~~~l~~l~~~~---~~~~~--~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~ 454 (587)
..-.+.++..+.+.- ...+. ..-..+..++..+.+.+. .+.+ .-+..++..+.-+...+|.
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHH
Confidence 111123333333331 11111 122234455555555442 1112 2344466667778888888
Q ss_pred HHHHHHHHHHHH
Q 007842 455 AAANNLKRLAEE 466 (587)
Q Consensus 455 ~a~~~l~~l~~~ 466 (587)
..+..+-.+...
T Consensus 259 ~Ildll~dllri 270 (371)
T PF14664_consen 259 AILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHHCC
Confidence 888777776653
No 211
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=5.1 Score=40.76 Aligned_cols=271 Identities=16% Similarity=0.066 Sum_probs=125.4
Q ss_pred CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC
Q 007842 291 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 370 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (587)
.+++.++.+++-.++-....+.++ .+..+-.+...+++++..+|.+++--++-.......+.. ...+...+.|.
T Consensus 426 s~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V----~~lL~Pi~~d~ 499 (878)
T KOG2005|consen 426 SDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEV----LELLSPIMFDT 499 (878)
T ss_pred cCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHH----HHHHhHHhcCC
Confidence 334444444444444333222221 133455666677777888888887776654433333333 33455556665
Q ss_pred ChH--HHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC
Q 007842 371 FPD--VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (587)
Q Consensus 371 ~~~--vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 446 (587)
+.. |...+.-+++.+.--.-.+.....++..+.+-.+ -.+...|..++.. -.-.+|.....+.+... +.
T Consensus 500 ~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL---~llflgkqe~~d~~~e~----~~ 572 (878)
T KOG2005|consen 500 KSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGL---ALLFLGKQESVDAVVET----IK 572 (878)
T ss_pred CCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHH---HHHHhcccchHHHHHHH----HH
Confidence 544 5544555555443211123333455555544322 2334444443221 11122322111112211 11
Q ss_pred CCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhccCCch-hHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhc
Q 007842 447 DKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 523 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l 523 (587)
.-...+|..+-..+ ..|...|.... .+. ..+.....+... .-.+.-...+|.-.-.+|.+.-.+..+-.+-.++
T Consensus 573 ~i~~~~~~~~~~lv-~~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l 649 (878)
T KOG2005|consen 573 AIEGPIRKHESILV-KSCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLL 649 (878)
T ss_pred HhhhHHHHHHHHHH-HHhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 11222333222222 22222222111 011 111111221110 0011112223332233444433345556666666
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 524 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 524 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.-.++.+|.+.--+++.++...+. -.++..|.+++.|.|.+|-++|.-|++-++
T Consensus 650 ~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 650 HYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred HcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence 777888888888888887765332 257888888889999999888888887554
No 212
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.77 E-value=4.9 Score=40.08 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc
Q 007842 330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (587)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 390 (587)
.-+-+|+.+++.++..+...-+ ...+.+-|.+...=++++..++..++.++..++....
T Consensus 287 ~~~~~V~Aa~A~A~v~l~~lP~--KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 287 SRDVRVLAAAASALVALGGLPK--KLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV 345 (441)
T ss_pred HHHHHHHHHHHHHHHHhccCCC--CccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888777654422 2344555655555567789999999999999886553
No 213
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.77 E-value=0.12 Score=38.39 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHHHHhhHHHH
Q 007842 446 QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPV 518 (587)
Q Consensus 446 ~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~ 518 (587)
.++.|.+|..|+..++.+++.++... ....+...+.+.+.|+ +...+..|+..+..++ ++.+...++|.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~ 88 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPN 88 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccC
Confidence 36789999999999999999888643 5567777777777766 4668888888888874 34344445554
No 214
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.76 E-value=4.9 Score=39.97 Aligned_cols=189 Identities=11% Similarity=0.138 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCCC-ChHHHHHHHHhHHHHHHhhcc---c---hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 007842 160 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
....+..++...+.++ +|..-....++++.+.....+ + .+.+.++|.+...++.+-.+.---+.+.++.+.+.
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555665555544 677788888888888877543 1 46788899998888776544444556777777766
Q ss_pred cCh----hhhhhchHHHHH-HhccCCcHHHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHh
Q 007842 233 LEP----QDCVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (587)
Q Consensus 233 ~~~----~~~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (587)
.+. +.+. .++|.+. ..+-+..-.| -+.++.+..+...-+.. .....++..+.+++.++..+ ..+.+.
T Consensus 148 ~~~~~~p~~y~-~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~L 223 (435)
T PF03378_consen 148 RPSSPLPDAYK-QLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDL 223 (435)
T ss_dssp SS--S--TTTG-GGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHH
T ss_pred CCCCCCcHHHH-HHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHH
Confidence 552 2222 3333332 2222211122 23344555444433322 22345778888888765433 447788
Q ss_pred HHHHHhhhCHHH---HHHhHhHHHHHhcc-CCcHHHHHHHHHHHHccccccch
Q 007842 304 VTKFCRILNPEL---AIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGK 352 (587)
Q Consensus 304 l~~l~~~~~~~~---~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
|..+...++.+. +.+.++..+.+.++ .+.++.....+..++.++...|.
T Consensus 224 L~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~ 276 (435)
T PF03378_consen 224 LESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP 276 (435)
T ss_dssp HHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence 888888888763 44555555544443 45566666666555555444444
No 215
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.75 E-value=0.73 Score=44.18 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCc-------hhHHHHHHHHHHHHhhh--c
Q 007842 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-------DSVRLLAVEGCAALGKL--L 233 (587)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~-------~~vr~~a~~~l~~l~~~--~ 233 (587)
..+.-+...+.+.+...|..+++.|. .+.-...++|.+..++.+.. ...-....+...++... +
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~-------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLR-------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhc-------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 33444444555566777777666544 33334556666666554431 12222223333333322 1
Q ss_pred ChhhhhhchHHHHHHhc----------cCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHHH
Q 007842 234 EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIA 299 (587)
Q Consensus 234 ~~~~~~~~l~~~l~~~~----------~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~~ 299 (587)
.-+.+...++|.+..++ .+.+|.+|..|++.++.++..++... ....+...+.+.+-|+. .....+
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 22445666777776654 35689999999999999999888642 22345555555555543 344788
Q ss_pred HHHhHHHHH
Q 007842 300 AAGKVTKFC 308 (587)
Q Consensus 300 a~~~l~~l~ 308 (587)
|+.+|..++
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 888887765
No 216
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=94.75 E-value=3.1 Score=41.70 Aligned_cols=146 Identities=13% Similarity=-0.010 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH----H
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----I 510 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~----~ 510 (587)
..+...+.....|-++.+|..+...++..+..++.-++.-..+.+.-=++.|.+..+|....+.+..+....+.. .
T Consensus 274 dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~ 353 (740)
T COG5537 274 DICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRR 353 (740)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 334455667778888889998888888888776655544444545445577888889999998888887654432 2
Q ss_pred HHhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842 511 TCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 511 ~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
+.+.+...++..+. |.+- ||.++++.+..+....-.+ ..-+-.+..+.-|..++-|....+++..+|+..
T Consensus 354 f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 354 FVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESICKID 424 (740)
T ss_pred HHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 34555555555443 4444 9999998888775432111 122334444567888887777888888887754
No 217
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.74 E-value=1.3 Score=37.41 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHh---hhhHHHHHhhccCC-chhHHHHHHHHHHHhhcccChH---
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSE--- 509 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~~--- 509 (587)
+..-+..+++++++.-|..++..++..++..+.+.+. ...+..+...++.+ ...++..++.++..+....+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 4444555556666666666666666665554444331 23334444444433 2345666666666665433221
Q ss_pred ---H---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 510 ---I---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 510 ---~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
. ..+.+++.+++++++ ......++.+|..+...++.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 0 123445556665554 66677788888887776554
No 218
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=6.2 Score=40.80 Aligned_cols=353 Identities=12% Similarity=0.054 Sum_probs=186.4
Q ss_pred hHHhhhHhhcCCCChHHHHHHHHHHHHhcC-----C---CChHHHHHHHHhHHHHHHhhccc-----hhhhHHHHHHHHh
Q 007842 144 SACGLFHIAYPSAPDILKTELRSIYTQLCQ-----D---DMPMVRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDL 210 (587)
Q Consensus 144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-----d---~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~l 210 (587)
++...+..+..+-+++....+++++...++ + +++.-..++...+..+.+.+... .....+.+.+...
T Consensus 389 aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 389 AALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 344444344444445556677777766552 1 24556678888888887755432 2334455666666
Q ss_pred hhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC-CccccchHHH---HH
Q 007842 211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPA---YV 286 (587)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~---l~ 286 (587)
.+++.--.|..+++.+..+...+++......+.....+++++.+-.|+..|+-++..+..+-.- +....++.+. +.
T Consensus 469 f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLL 548 (970)
T COG5656 469 FRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLL 548 (970)
T ss_pred hcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHH
Confidence 7888888899999999999877877667777888888899999999999999999888765321 1112233333 34
Q ss_pred HhcCCChHHHHHHHHHhHH-HHHhhhCHH--HHHHhHhH----HHHHhccCC---c---HHHHHHHHHHHHccccc---c
Q 007842 287 RLLRDNEAEVRIAAAGKVT-KFCRILNPE--LAIQHILP----CVKELSSDS---S---QHVRSALASVIMGMAPL---L 350 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~-~l~~~~~~~--~~~~~i~~----~l~~~~~d~---~---~~vr~~a~~~l~~l~~~---~ 350 (587)
.+.++-+-++-..+++.+. .+.+.+.+- .....+.. .-..+...+ + .+-.-+|...+..+... +
T Consensus 549 sLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSl 628 (970)
T COG5656 549 SLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSL 628 (970)
T ss_pred HhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555432 333333221 11112222 222222222 1 12233333333333221 1
Q ss_pred chhH-----HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHH----HhcCCCh-HHHHHHHHH
Q 007842 351 GKDA-----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE----LAEDRHW-RVRLAIIEY 420 (587)
Q Consensus 351 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~----~~~~~~~-~vR~~~~~~ 420 (587)
.+.. ....+.|.+.-.++++-.++-..++..+....= ..+.+ ..+++.+.+ +..++.. ..-..+..+
T Consensus 629 en~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf--~skeI-~pimwgi~Ell~~~l~~~~t~~y~ee~~~a 705 (970)
T COG5656 629 ENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF--MSKEI-EPIMWGIFELLLNLLIDEITAVYSEEVADA 705 (970)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH--HHHHh-hhhhhHHHHHHHhcccccchhhhHHHHHHH
Confidence 1111 223455666555666555666666555543221 11111 133333333 3344432 223334445
Q ss_pred HHHHHHhhC-----hhhhHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc------cCC
Q 007842 421 IPLLASQLG-----VGFFDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNP 487 (587)
Q Consensus 421 l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~ 487 (587)
+..+...-+ .+.+.+.+..+....+..++. .=+..+++.+..++-.++.+. .++-+|.+.+.. .|.
T Consensus 706 l~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L-l~qy~plfi~vags~l~~~dE 784 (970)
T COG5656 706 LDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL-LSQYLPLFISVAGSGLKMIDE 784 (970)
T ss_pred HHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh-HHhhhHHHHHHHhhhhhcccc
Confidence 555544322 233445566777777766655 456677777777777776652 223344443332 233
Q ss_pred chhHHHHHHHHHH
Q 007842 488 HYLYRMTILRAIS 500 (587)
Q Consensus 488 ~~~~R~~a~~~l~ 500 (587)
....+..+++.+-
T Consensus 785 lg~~sv~alelii 797 (970)
T COG5656 785 LGPASVYALELII 797 (970)
T ss_pred ccchhhhHHHHHH
Confidence 3445555555443
No 219
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=3.2 Score=41.05 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=25.9
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHh
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARA 39 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~ 39 (587)
.++.|++.++.+|++.-..++..|.++.+.
T Consensus 48 dLellVeriqd~d~~l~~~sLn~Lkeviks 77 (881)
T COG5110 48 DLELLVERIQDPDIDLQNNSLNMLKEVIKS 77 (881)
T ss_pred cHHHHHHHhhCCChHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999877543
No 220
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.53 E-value=0.73 Score=42.94 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCC
Q 007842 410 HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK 448 (587)
Q Consensus 410 ~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~ 448 (587)
+.+++...++.+..+...+|... +.+.++|.+...+.++
T Consensus 237 ~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 237 YPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred chhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 45666666666666666655433 2244555555555544
No 221
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.39 E-value=2.4 Score=42.18 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=34.0
Q ss_pred cchhhHHhhhHhhcCCCChHHHHHHHH-HHHHhcCCCChHHHHHHHHhHHHHHHhhcc
Q 007842 140 TARVSACGLFHIAYPSAPDILKTELRS-IYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (587)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~-~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 196 (587)
..|+.+...+|.+..+++.+....++. .|...+++++..-|..++..+..++.....
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~ 159 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKE 159 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCcc
Confidence 445556666665555554444444443 566666777666677777777776666543
No 222
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.39 E-value=4.5 Score=37.91 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=129.0
Q ss_pred HHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhhchhhHH---hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhH
Q 007842 359 LLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (587)
Q Consensus 359 l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~ 434 (587)
+...+.+++.-. ...|...|++....+.+.+|.+.+. ..+.|-+..++....-.||-..+..+....-.+|. ...
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence 334445555433 3579999999999999998877543 34466777777777888999999988887666666 333
Q ss_pred HH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC----
Q 007842 435 DK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---- 507 (587)
Q Consensus 435 ~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~---- 507 (587)
+. ++..++..+.|+..++-..+...+..+...+|.+.|-..++-.+. .++.+|..|+..+..-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 33 444455667889999999999999999999998866555555444 367799999988887665444
Q ss_pred --hHH----H----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842 508 --SEI----T----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 508 --~~~----~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
... . ...++..+...++|++.-|+..++..|..-.+
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 100 0 23456778888999999999999998877554
No 223
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.37 E-value=6 Score=39.33 Aligned_cols=193 Identities=13% Similarity=0.187 Sum_probs=96.1
Q ss_pred hhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCC------ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 007842 239 VAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
.+.+..++...++++ +|.--....++++.+.+...+. .....++|.+...++.+-.+.--.+...+..+.+..
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~ 148 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELR 148 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455555555444 5666777777777777764431 124468888888887665565666677777777765
Q ss_pred CHHHHHHhHhHHHHHhccCCcHHHHH---HHHHHHHcccc----ccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842 312 NPELAIQHILPCVKELSSDSSQHVRS---ALASVIMGMAP----LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 312 ~~~~~~~~i~~~l~~~~~d~~~~vr~---~a~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
......+.....+..++...-|+-|. +....+..+.. .+......+.++.++.+++.+...+ ..+...|..
T Consensus 149 ~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~ 226 (435)
T PF03378_consen 149 PSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLES 226 (435)
T ss_dssp S--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHH
Confidence 52222122222222333333343221 11222222111 1111123456777788888876544 346677777
Q ss_pred hhhhhchhhH---HhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhh
Q 007842 385 VNQVIGIDLL---SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFF 433 (587)
Q Consensus 385 l~~~~~~~~~---~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~ 433 (587)
+...++.+.+ .+.++..+...+ +++.++.+...+..+..++...|++.+
T Consensus 227 iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 227 IVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp HHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 7777766543 233333333333 456677777777777766655565443
No 224
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.36 E-value=0.93 Score=40.29 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 007842 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~ 269 (587)
...+.+.....+++.-+|+.++..+...... ...+.++..+.....|++..||.+..-.|..++
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443322222 123344555555555555555555555555443
No 225
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.36 E-value=0.8 Score=45.13 Aligned_cols=140 Identities=14% Similarity=0.213 Sum_probs=87.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCch-hHHHHHHHHHH---HHhhhcCh---
Q 007842 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCA---ALGKLLEP--- 235 (587)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~---~l~~~~~~--- 235 (587)
.++.-+...+.+.++..|+.|+++|.. +.-...++|.|..++.+... ++-...+..|. .+...+-+
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 344445555556778899998887653 33345567777666655422 21111122222 22222111
Q ss_pred ---hhhhhchHHHHHHhc----------cCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC--hHHHHH
Q 007842 236 ---QDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN--EAEVRI 298 (587)
Q Consensus 236 ---~~~~~~l~~~l~~~~----------~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~ 298 (587)
+.+...++|-+..++ .|.+|.+|..|+..+..++..++... ....+...+.+.+.|. .+....
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 345667777776544 46789999999999999999887532 2335666666666665 477888
Q ss_pred HHHHhHHHHHh
Q 007842 299 AAAGKVTKFCR 309 (587)
Q Consensus 299 ~a~~~l~~l~~ 309 (587)
+++..|..++.
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 89988888765
No 226
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.28 E-value=7.9 Score=40.32 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=97.2
Q ss_pred HHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCh-------HH-HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842 435 DKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (587)
Q Consensus 435 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~ 505 (587)
+.++...+.++ ...+..+-++++.+|.++....+. .. -.+..+|.+.+++...+..+-.+++.++.++...
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 44555544444 446677889999999988753221 11 3467899999999999999999999999999865
Q ss_pred cChH-HHHhhHHHHHHhhcCCCC------hhHHHHHHHHHHHhhh-hhch--HHHHhhHHHHHHHhcCCC-CccHHHHHH
Q 007842 506 MGSE-ITCSRLLPVVINASKDRV------PNIKFNVAKVLQSLIP-IVDQ--SMVEKTIRPCLVELTEDP-DVDVRFFAT 574 (587)
Q Consensus 506 ~~~~-~~~~~il~~l~~~l~d~~------~~vR~~~~~~l~~l~~-~~~~--~~~~~~i~~~l~~l~~d~-d~~Vr~~a~ 574 (587)
.... .+..+.+|.+++.+-+.. +++-..++.+|-+++. .+.. +.+...=++.|..+.... ++.+-.+|.
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 4433 345788999999987654 4667778888888773 3222 233333355555544333 335555666
Q ss_pred HHHHHHHH
Q 007842 575 QAIQSIDH 582 (587)
Q Consensus 575 ~al~~l~~ 582 (587)
..|..+-+
T Consensus 677 ~vL~~lW~ 684 (717)
T KOG1048|consen 677 SVLDVLWQ 684 (717)
T ss_pred HHHHHHHH
Confidence 66655543
No 227
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.28 E-value=5.1 Score=38.10 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhhC-hhhhHHHHHHHHHH-hcCC---CchHHHHH-HHHHHHHHHHHhChH------HHhhhhHHHH
Q 007842 413 VRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WLQD---KVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQV 480 (587)
Q Consensus 413 vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~d---~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~l~~~l 480 (587)
+|...++.+..+..... .+.....++|.+.. .+.| ..+..|.. .+.+++.++..++.. .+.+.++...
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45566666666665443 22233334444333 3332 44444543 455666666666553 1234455555
Q ss_pred HhhccC---CchhHHHHHHHHHHHhhcccCh------HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch----
Q 007842 481 LEMINN---PHYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---- 547 (587)
Q Consensus 481 ~~~l~d---~~~~~R~~a~~~l~~l~~~~~~------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---- 547 (587)
..++++ ..+..|......+..+...+-. ......++..+.-.+++++.+|-..+++++..+...+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 566544 2478999999999998875432 123456777788889999999999999999999887765
Q ss_pred ---HHHHhhHHHHHHH---hcCCCCcc
Q 007842 548 ---SMVEKTIRPCLVE---LTEDPDVD 568 (587)
Q Consensus 548 ---~~~~~~i~~~l~~---l~~d~d~~ 568 (587)
..+....++.+.. .+.|++..
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDHK 229 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence 2344444555555 45677643
No 228
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.17 E-value=3.3 Score=41.08 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCC--chhHHHHHHHH
Q 007842 433 FDDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRA 498 (587)
Q Consensus 433 ~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~~R~~a~~~ 498 (587)
|...++|.++.++ .|+.|.+|.-|+..+..+++.++... ....++..+.+.+.|. .+.....++..
T Consensus 285 Ylh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~g 364 (576)
T KOG2549|consen 285 YLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAG 364 (576)
T ss_pred HHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHH
Confidence 3344566655544 57889999999999999999888653 3456666666666665 57888889888
Q ss_pred HHHhhc
Q 007842 499 ISLLAP 504 (587)
Q Consensus 499 l~~l~~ 504 (587)
|..++.
T Consensus 365 L~~lg~ 370 (576)
T KOG2549|consen 365 LSELGH 370 (576)
T ss_pred HHHhhh
Confidence 888765
No 229
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.15 E-value=6.1 Score=38.57 Aligned_cols=270 Identities=12% Similarity=0.089 Sum_probs=130.5
Q ss_pred hHHHHHHHHHhHHHHHhh------hCHHHHHHhHhHHHHHhccCCc--HHHHHHHHHHHH--ccccccchhHHHHhHHHH
Q 007842 293 EAEVRIAAAGKVTKFCRI------LNPELAIQHILPCVKELSSDSS--QHVRSALASVIM--GMAPLLGKDATIEQLLPI 362 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~------~~~~~~~~~i~~~l~~~~~d~~--~~vr~~a~~~l~--~l~~~~~~~~~~~~l~~~ 362 (587)
+.++-..|++.++.+... ++.+.. ..++......+.+++ -.+-......+. ++...+-.....+.++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~-~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFA-SFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 556777888888876542 333321 223444444444332 233333333332 222211111122333333
Q ss_pred HHHhhc-CCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHH
Q 007842 363 FLSLLK-DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (587)
Q Consensus 363 l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 439 (587)
+..+-+ =.+..+-...+..+.++....... ......+|.+...+-+....+|..++.....+...++++......+.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~ 217 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL 217 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 333322 234455556666666666544321 11234556666655566777787777776666666665433222222
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHH
Q 007842 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 519 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l 519 (587)
..++.-..+. .+......-+..+...-+.......+...+..++.++. +..-.+.+..+...
T Consensus 218 ~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v~ 279 (372)
T PF12231_consen 218 EDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKVP 279 (372)
T ss_pred HHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHHH
Confidence 1211111111 23333333333333221111122223333332222110 12222457778888
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhhhhchH------HHHhhHHHHHHHhcCCCCc----cHHHHHHHHHHHHH
Q 007842 520 INASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDPDV----DVRFFATQAIQSID 581 (587)
Q Consensus 520 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~------~~~~~i~~~l~~l~~d~d~----~Vr~~a~~al~~l~ 581 (587)
..+++++++.+|..|..+-..++-....+ ...-...|....+...... .++..+...+..+-
T Consensus 280 e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 280 EKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 88999999999999999988877543322 2222345666666555555 67777777666554
No 230
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.15 E-value=3.9 Score=36.29 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=80.9
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccC-CcHHHHHHH-HHHHHHHHHHhCCCccc
Q 007842 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR 278 (587)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~a-~~~l~~~~~~~~~~~~~ 278 (587)
+........+..++..+.|..|+..+.......+. ..++.+...+.+ ++|.+-... ...++.+... .
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------H 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------H
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------h
Confidence 34455566666667777777777666554333221 234445444443 456655555 4445555432 1
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
....+.+.+.+++++.-+|.+++..+...... ...+.++..+...+.|++..||.+...+|..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 45777777777887777777777666554443 22356667777777888888888888888877754
No 231
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.07 E-value=5.9 Score=38.10 Aligned_cols=147 Identities=10% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhh-----ccCCchhHHHHHHHHHHHhhcccC
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEM-----INNPHYLYRMTILRAISLLAPVMG 507 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~-----l~d~~~~~R~~a~~~l~~l~~~~~ 507 (587)
++++..+..++.+++.+....+.-++|++++.-.. .+....++..+++. -.|.|-.+..+++.++.+++.-..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 44777888899999999999999999999874322 12334445554443 345678888999999999875333
Q ss_pred h-HHH-HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HH-HHhhHHHHHHHhcCCCCcc-HHHHHHHHHHHH
Q 007842 508 S-EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SM-VEKTIRPCLVELTEDPDVD-VRFFATQAIQSI 580 (587)
Q Consensus 508 ~-~~~-~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~-~~~~i~~~l~~l~~d~d~~-Vr~~a~~al~~l 580 (587)
. ..+ ...+...++..++-..|.|....+.++.-+...-+. +. -...++..|..-+..+|.. |---..+.+.-+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 2 222 233455666666667777776666666554432110 10 0124555566666666654 544444444333
Q ss_pred H
Q 007842 581 D 581 (587)
Q Consensus 581 ~ 581 (587)
-
T Consensus 474 I 474 (604)
T KOG4500|consen 474 I 474 (604)
T ss_pred H
Confidence 3
No 232
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=21 Score=44.20 Aligned_cols=284 Identities=13% Similarity=0.118 Sum_probs=167.1
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh----hCH------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccc
Q 007842 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI----LNP------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~ 347 (587)
+..+++.+...+..++..++.+...++..+... +|. -+..+.+++.+.+++.++.|+-|...+..+..+.
T Consensus 982 ~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 982 PSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 345789999999988999999988888766553 221 1345678888889999999999999999888887
Q ss_pred cccchhHH---HHhHHHHHHHhhcCCChHHHH----HHHHhhhhhh----hhhchh----hHHhhHHHHHHHHhcCCChH
Q 007842 348 PLLGKDAT---IEQLLPIFLSLLKDEFPDVRL----NIISKLDQVN----QVIGID----LLSQSLLPAIVELAEDRHWR 412 (587)
Q Consensus 348 ~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~----~~~~~~----~~~~~~l~~l~~~~~~~~~~ 412 (587)
..++.... ...++..+...+.|...++-. .+-..+..+. ...+.+ .....++..+..-+.+++..
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 76663222 223444455555554433332 1112222221 111111 12233444455556788999
Q ss_pred HHHHHHHHHHHHHHhhChhhh------HHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHh--h------hhH
Q 007842 413 VRLAIIEYIPLLASQLGVGFF------DDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--Q------HIT 477 (587)
Q Consensus 413 vR~~~~~~l~~l~~~~~~~~~------~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~------~l~ 477 (587)
||..+.+.+..++...|.+.. ++.+ .|.+..-+.--...+...-+.++.... ..+++.+. + ..+
T Consensus 1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHHHH
Confidence 999999999999887764421 1111 222222222233334443333333322 22332110 0 000
Q ss_pred HH-----------HHhhccCC----chhHHHHHHHHHHHhhcccCh-----HHHHhhHHHHHHhhcCCCChhHHHHHHHH
Q 007842 478 PQ-----------VLEMINNP----HYLYRMTILRAISLLAPVMGS-----EITCSRLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 478 ~~-----------l~~~l~d~----~~~~R~~a~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~~~~vR~~~~~~ 537 (587)
.. +......+ .-..|.+++..++........ ..+...++-.+.+.+..+.+++-..+..+
T Consensus 1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00 11111111 234588899888887654332 23567888888888888899999888888
Q ss_pred HHHhhh---hhchHHHHhhHHHHHHHhc
Q 007842 538 LQSLIP---IVDQSMVEKTIRPCLVELT 562 (587)
Q Consensus 538 l~~l~~---~~~~~~~~~~i~~~l~~l~ 562 (587)
+..... .++.+..+....|.+.++.
T Consensus 1301 l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1301 LRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred HHhhhhccccccHHHHHhhHHHHHHhhh
Confidence 877654 3566667777778887763
No 233
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=9.8 Score=39.73 Aligned_cols=299 Identities=14% Similarity=0.083 Sum_probs=169.7
Q ss_pred cHHHHHHHhcCcc-HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-C-CcHHHHHHHHHHhccccccC-----CCc
Q 007842 10 PIAVLIDELKNDD-IQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYV-----GGV 81 (587)
Q Consensus 10 ~~~~l~~~l~s~~-~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~l~~~~-----~~~ 81 (587)
.|+.|.+.+.+.. .+-|+.|++.|+.+++....+.....+-|++...- | .++++...+.+.+-.+...- -..
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 3788999988864 88999999999998877654444444455554432 2 34566555555443332110 000
Q ss_pred c---------h------HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhh------HHHHHHHHhcCCCCc
Q 007842 82 E---------H------AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW------YIPLVKRLAAGEWFT 140 (587)
Q Consensus 82 ~---------~------~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~------l~~~l~~l~~~~~~~ 140 (587)
. + .+..+.++...+...|.+||..++.-+..+...-+++. ... -+.-+..+..|.-..
T Consensus 103 s~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~-q~~ll~~P~gIS~lmdlL~DsrE~ 181 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL-QDALLVSPMGISKLMDLLRDSREP 181 (970)
T ss_pred chhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH-HHHHHHCchhHHHHHHHHhhhhhh
Confidence 0 0 12344556666778899999999999999998877652 222 233344566666777
Q ss_pred chhhHHhhhHhhcCCCChH----HHHHHHHHHHHhcCC----CChHHHHHHHHhHHHHHHhhccc-h--hhhHHHHHHHH
Q 007842 141 ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD----DMPMVRRSAASNLGKFAATVEPA-H--LKTDIMSIFED 209 (587)
Q Consensus 141 ~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d----~~~~vr~~~~~~l~~l~~~~~~~-~--~~~~l~~~l~~ 209 (587)
.|-.++.++..+....+.- ....++.-+...+.. +..-|-.-|+..+-.+.+..... . .....+|-+.+
T Consensus 182 IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~k 261 (970)
T KOG0946|consen 182 IRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLK 261 (970)
T ss_pred hchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence 8888998888887776542 223344444444332 23467777777777777664321 1 11122333332
Q ss_pred hh-----hCC----chhHHHHHHHHHHHHhhh-cCh------------hhhhhchHHHHHHhccCC--cHHHHHHHHHHH
Q 007842 210 LT-----QDD----QDSVRLLAVEGCAALGKL-LEP------------QDCVAHILPVIVNFSQDK--SWRVRYMVANQL 265 (587)
Q Consensus 210 l~-----~d~----~~~vr~~a~~~l~~l~~~-~~~------------~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l 265 (587)
++ .|+ +..-|...+..+-.+.+. .++ ......++..+...+-++ ...|+..++.+.
T Consensus 262 lL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitv 341 (970)
T KOG0946|consen 262 LLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITV 341 (970)
T ss_pred hcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHH
Confidence 22 332 223444433333333222 222 112445666666655544 346888888887
Q ss_pred HHHHHHhC-------C----Ccc--ccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHh
Q 007842 266 YELCEAVG-------P----EPT--RMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR 309 (587)
Q Consensus 266 ~~~~~~~~-------~----~~~--~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~ 309 (587)
+.++.... . ... ...++-.++.+..+.. ...|.++.+++..+.-
T Consensus 342 AevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~ 399 (970)
T KOG0946|consen 342 AEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY 399 (970)
T ss_pred HHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Confidence 77765321 0 111 1234445555555544 7789999998877653
No 234
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.79 E-value=2.9 Score=39.79 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=73.9
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhccC----CchhHHHHHHHHHHHhhcccC--hHHH
Q 007842 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG--SEIT 511 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d----~~~~~R~~a~~~l~~l~~~~~--~~~~ 511 (587)
.+++++..+++.++..|+..+..+...-+.... ...+++.+++.+.+ ++..++..++.+++.+...-. ..+.
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 355588889999999999999999875443221 13566666666554 455677889999999975321 1222
Q ss_pred HhhHHHHHHhhc-----CCC--ChhHHHHHHHHHHHhhhh--hchHHHHhhHHHHHHHhcCC-CCccHHHHHHHHHHH
Q 007842 512 CSRLLPVVINAS-----KDR--VPNIKFNVAKVLQSLIPI--VDQSMVEKTIRPCLVELTED-PDVDVRFFATQAIQS 579 (587)
Q Consensus 512 ~~~il~~l~~~l-----~d~--~~~vR~~~~~~l~~l~~~--~~~~~~~~~i~~~l~~l~~d-~d~~Vr~~a~~al~~ 579 (587)
....++.+.+.+ .+. ..++...++-++-.+.-. .-.......++|.+.++..+ ....|-+.+..++..
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 355566666666 222 444555555555444322 11122233466666664433 333444444444443
No 235
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.59 E-value=25 Score=43.69 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=152.8
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc----Ch------hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 007842 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL----EP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----~~------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~ 270 (587)
..+++.+...+..++..++..+..++..+.... +. -...+.+++-+.+++.|+.|.-|...+..|+.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 446677777778888889999988888776542 21 12345677888889999999999999999888887
Q ss_pred HhCCCcc---ccchHHHHHHhcCCChHHHHH----HHHHhHHHHHhh----hCH----HHHHHhHhHHHHHhccCCcHHH
Q 007842 271 AVGPEPT---RMDLVPAYVRLLRDNEAEVRI----AAAGKVTKFCRI----LNP----ELAIQHILPCVKELSSDSSQHV 335 (587)
Q Consensus 271 ~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~----~~~----~~~~~~i~~~l~~~~~d~~~~v 335 (587)
.++.... ..+++..+.-.+.|...++.. .+-..+..+... ... ......++..+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6652111 123444444445553333222 122222222221 111 1223445555556667888999
Q ss_pred HHHHHHHHHccccccchhH------HHHhH-HHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH--Hh------hHHH
Q 007842 336 RSALASVIMGMAPLLGKDA------TIEQL-LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQ------SLLP 400 (587)
Q Consensus 336 r~~a~~~l~~l~~~~~~~~------~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~------~~l~ 400 (587)
|..+...+..+++..|.+. +.+.+ .|.+.+-+......+.-+-+.++.... .+++.-+ .. ..+.
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHHHHH
Confidence 9999999999887765432 11112 333333333333444433333332221 1121100 00 0000
Q ss_pred H-----------HHHHhcCC----ChHHHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 007842 401 A-----------IVELAEDR----HWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCMQWLQDKVYSIRDAAANNL 460 (587)
Q Consensus 401 ~-----------l~~~~~~~----~~~vR~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 460 (587)
. +......+ .-+.|..+++.+........ ...+.+.++..++..+..+..++-+.+..++
T Consensus 1222 ~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l 1301 (3550)
T KOG0889|consen 1222 ALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGL 1301 (3550)
T ss_pred HhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0 01100111 22457777777766554332 1223466777788888888888888888888
Q ss_pred HHHHHH---hChHHHhhhhHHHHHh
Q 007842 461 KRLAEE---FGPEWAMQHITPQVLE 482 (587)
Q Consensus 461 ~~l~~~---~~~~~~~~~l~~~l~~ 482 (587)
...... ++.+.....+-|.+..
T Consensus 1302 ~~v~~~~~~~~ke~lq~~lrplL~~ 1326 (3550)
T KOG0889|consen 1302 RKVLAQDVKLPKELLQSHLRPLLMN 1326 (3550)
T ss_pred HhhhhccccccHHHHHhhHHHHHHh
Confidence 776642 3444333333344443
No 236
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.56 E-value=1.4 Score=38.15 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=35.3
Q ss_pred hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
..++.+++...+++..+|..|+..+..+... |-- .....+|.++.+..|+++.+|..|...+..+.++.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555431 100 01345555555555555566655555555555544
No 237
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.55 E-value=0.67 Score=37.84 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=48.1
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhhhchH
Q 007842 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
.+..+..-++++|+.+...|+..+..+++++|..+. ...++..+.+++++ .++.||..++..+..+...+..+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 344444445556666666677777777666665432 45566677777766 67788888888888887776543
No 238
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=93.35 E-value=0.33 Score=36.05 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=50.1
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHH
Q 007842 251 QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCV 324 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l 324 (587)
.+++|.+|..|++.++.++..++... ....+...+.+.+.|++ ...+.+|+..|..++ ++.+...++|.+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~l 89 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPNL 89 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccCc
Confidence 35689999999999999999888532 33457777777777654 567888888888874 444434455544
No 239
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=2.3 Score=40.46 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=80.7
Q ss_pred HHHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh---hHHHH
Q 007842 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKL 437 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l 437 (587)
++..++..+..||..|+..+.......... .....+++.+..++.|.+..+|...++.+..+....+++. +...+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 455667778889999988888877663221 1223456666777888999999999988888766655443 33456
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 472 (587)
.+.+...+..-.+.+|.-+...+..+...+++.+.
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 67777778888899999999999999888887763
No 240
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.29 E-value=8.1 Score=37.13 Aligned_cols=117 Identities=11% Similarity=0.079 Sum_probs=59.1
Q ss_pred HHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHH
Q 007842 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV 261 (587)
Q Consensus 182 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a 261 (587)
....++..+.+....++.+.+.+.++..+++.+...++. +...+.. ......+.+..++.+.++.+-..+
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~l-----f~~~a~~-----~k~~~~~~fl~ll~r~d~~iv~~~ 134 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDL-----FHDYAHK-----LKRTEWLSFLNLLNRQDTFIVEMS 134 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHH-----HHHHHHh-----hhccchHHHHHHHhcCChHHHHHH
Confidence 344445555555555666666666666666655443321 1111110 112224455566667777776666
Q ss_pred HHHHHHHHHHhCCCcccc----chHHHHHHhcCC-ChHHHHHHHHHhHHHHHh
Q 007842 262 ANQLYELCEAVGPEPTRM----DLVPAYVRLLRD-NEAEVRIAAAGKVTKFCR 309 (587)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~----~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~ 309 (587)
...++.++.. |...... .....+...++. .+...+..++.+|..+..
T Consensus 135 ~~Ils~la~~-g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~ 186 (442)
T KOG2759|consen 135 FRILSKLACF-GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR 186 (442)
T ss_pred HHHHHHHHHh-ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence 6777666653 3222111 223334444444 445566666777766654
No 241
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.19 E-value=4.1 Score=34.32 Aligned_cols=110 Identities=17% Similarity=0.162 Sum_probs=74.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHH---HHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChH-
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE- 470 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~- 470 (587)
..+...+.++++++++.-|-.++..+..++...+.+.+.+ ..+..++..++. ....++..++.++..++...+..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566667778888888888888888888888776666643 344555566654 45678999999999998755431
Q ss_pred -H-------HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC
Q 007842 471 -W-------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (587)
Q Consensus 471 -~-------~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~ 507 (587)
. ....+++.+.+++++ ......++.++..+....+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 1 123445555555554 4566777777777776443
No 242
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.11 E-value=2.5 Score=34.23 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=48.0
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhhc
Q 007842 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~~ 546 (587)
+..+..-++++++.+..-|+..+..+.+++|..+. ...++..+.+++.. .+..||..++..+..+...++
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44444556666777777777777777777776542 35566666666642 567889988888888887665
Q ss_pred h
Q 007842 547 Q 547 (587)
Q Consensus 547 ~ 547 (587)
.
T Consensus 120 ~ 120 (139)
T cd03567 120 H 120 (139)
T ss_pred c
Confidence 3
No 243
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.93 E-value=0.44 Score=36.93 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHhhc-CCCChhHHHHHHHHHHHhhhhhchH-HH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 515 LLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-MV--EKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 515 il~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
++..|.+++ ++.++.+-..||.=|+.++..++.- .+ .-.....+.+|++++|++||..|..|++.+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334444444 2235555555666666666555332 11 1245677778888888999988888888765
No 244
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.90 E-value=2.3 Score=34.65 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=64.8
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhchH
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
...+..+.+-++++++.+...|+..+..+.+++|..+. ...++..+.++++ ..++.||..++..+..+...++.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34566666777888999999999999999999887553 4667777777776 568899999999999999887655
Q ss_pred HHHhhHHHHHHHh
Q 007842 549 MVEKTIRPCLVEL 561 (587)
Q Consensus 549 ~~~~~i~~~l~~l 561 (587)
.-...+......|
T Consensus 120 ~~l~~i~~~y~~L 132 (142)
T cd03569 120 PQLKYVVDTYQIL 132 (142)
T ss_pred cccHHHHHHHHHH
Confidence 3333343333333
No 245
>PF05536 Neurochondrin: Neurochondrin
Probab=92.88 E-value=13 Score=38.37 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHhhhcCh----hhhhhchHHHHHHhccCCcH-HHHHHHHHHHHHHHHHhCC---CccccchHHHHHH
Q 007842 216 DSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGP---EPTRMDLVPAYVR 287 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~ 287 (587)
...+..|+..|..++. ++ +...-.-+|.+...+...+. .+-..++++|..++.. ++ .......++.+.+
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHH
Confidence 4567778888888775 22 11233457777777766655 8888899999888832 11 1112345566666
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhhCHH------HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--------hh
Q 007842 288 LLRDNEAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KD 353 (587)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~~ 353 (587)
.+.+ .+.....++..+..+....+.+ .....+++.+...+.......+..++..++.+....+ ..
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 5555 5566777888888777766532 2234566777777766666677777877777655442 22
Q ss_pred HHHHhHHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhhchh
Q 007842 354 ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~ 392 (587)
.....+...+..++++. .+.-|..++...+.+.+.+|.+
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 34567777777777765 5778889999999998888865
No 246
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.63 E-value=9.7 Score=36.30 Aligned_cols=207 Identities=13% Similarity=0.154 Sum_probs=123.8
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh-chh------hH---HhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 007842 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID------LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~------~~---~~~~l~~l~~~~~~~~~~vR~~~~~~l~~ 423 (587)
.+...+++.+...+..-+.+.|..+...+..+...- +.. .+ .+.++..+....++++... .+-..+..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHH
Confidence 345677788888888888889988888887776542 211 11 1344555555555444221 11111111
Q ss_pred HHHhhChhhhHH-----HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---hChHHHh---hhhHHHHHhhccCCchhHH
Q 007842 424 LASQLGVGFFDD-----KLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWAM---QHITPQVLEMINNPHYLYR 492 (587)
Q Consensus 424 l~~~~~~~~~~~-----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~---~~l~~~l~~~l~d~~~~~R 492 (587)
.++ -+.+.. ...-.+....+.++.+|-.-|..++..+... ...+++. +.++.....++.++|+-+|
T Consensus 150 c~k---~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 150 CIK---HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HTT---SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHh---hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 111 111111 1122256777889999999999998887753 2223322 4567777888999999999
Q ss_pred HHHHHHHHHhhccc-ChHHH-----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch-H-------HHHhhHHHHH
Q 007842 493 MTILRAISLLAPVM-GSEIT-----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------MVEKTIRPCL 558 (587)
Q Consensus 493 ~~a~~~l~~l~~~~-~~~~~-----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~-~-------~~~~~i~~~l 558 (587)
..+++.||.+...- ....+ .+.-+..+..+++|++.++|..|...+..++..-.. . .-.+.++..+
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl 306 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL 306 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999997421 11111 245677888899999999999999999887654211 1 1235667777
Q ss_pred HHhcCCC
Q 007842 559 VELTEDP 565 (587)
Q Consensus 559 ~~l~~d~ 565 (587)
..+..|+
T Consensus 307 ~~f~~~~ 313 (335)
T PF08569_consen 307 KDFHTDR 313 (335)
T ss_dssp HTTTTT-
T ss_pred HhCCCCC
Confidence 7777777
No 247
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.59 E-value=0.27 Score=29.94 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=21.0
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
...+|.+.++++++++.+|..++.+|++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 446677777777777777777777777664
No 248
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.48 E-value=2.5 Score=37.92 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=46.4
Q ss_pred HHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHH-----HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHh
Q 007842 122 LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (587)
Q Consensus 122 ~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~-----~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 193 (587)
+--++.|++.....+. .+..|.++.+.+|.+.+.-+++.. .+++|++...++.++..-|..|.-.+.++...
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD 169 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 3456788886555543 456788899999988886666533 46778888888877777777777776666553
No 249
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=16 Score=38.34 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCCccccchHHHH-------HH
Q 007842 216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRMDLVPAY-------VR 287 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l-------~~ 287 (587)
...|+..+-.++.=...--+.+..+.+-..+.++++|. +-.||-.+++++..+.....- .++.++|.+ .+
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF--~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNF--SEDSFLPYLENLFVLLFK 578 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccC--ChhhhhhhHHHHHHHHHH
Confidence 45566666666653332222334555666778888888 677999999999887765431 122233332 33
Q ss_pred hcCC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhcc--CCcHHHHHHHHHHHHccccccchh--HHHHhHH
Q 007842 288 LLRD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKD--ATIEQLL 360 (587)
Q Consensus 288 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~ 360 (587)
+++. .+-+.|...+..++.+....++- +....++.++-.+-. .+++-.|.+....+.++...+|.. .+.+.+.
T Consensus 579 ll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~ 658 (978)
T KOG1993|consen 579 LLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLY 658 (978)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHH
Confidence 3332 34566777888888777765542 223334444433332 356778999999999998888753 3456667
Q ss_pred HHHHHhh
Q 007842 361 PIFLSLL 367 (587)
Q Consensus 361 ~~l~~~l 367 (587)
|++....
T Consensus 659 pVIel~~ 665 (978)
T KOG1993|consen 659 PVIELST 665 (978)
T ss_pred HHHHHhc
Confidence 7665443
No 250
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=22 Score=39.93 Aligned_cols=218 Identities=14% Similarity=0.150 Sum_probs=124.0
Q ss_pred hhhCCchhHHHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccCC---cHHHHHHHHHHHHHHHHHhCCCc---cccch
Q 007842 210 LTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDK---SWRVRYMVANQLYELCEAVGPEP---TRMDL 281 (587)
Q Consensus 210 l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~---~~~vR~~a~~~l~~~~~~~~~~~---~~~~l 281 (587)
....+.-+||....+++-.+.+..+.. ..|+.+++.+.....-. +-.+-+.+..++.-++..+=+.. ....+
T Consensus 850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~l 929 (1610)
T KOG1848|consen 850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDL 929 (1610)
T ss_pred HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHH
Confidence 344455678888889998888887762 12677777776554433 34455556666666654332211 12234
Q ss_pred HHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCH-----------------------------HHHHHhHhHHHHHhccCC
Q 007842 282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP-----------------------------ELAIQHILPCVKELSSDS 331 (587)
Q Consensus 282 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~i~~~l~~~~~d~ 331 (587)
++.+..+.. -.+.++...|+..+..+...+.. +...-.++..+.+++.|.
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 555544442 34456666666666655554321 111123455667788888
Q ss_pred cHHHHHHHHHHHHccccc----cchhH----HHHhHHHHHHHhhc---CC--ChHH----HHHHHHhhhhhhhhhchh--
Q 007842 332 SQHVRSALASVIMGMAPL----LGKDA----TIEQLLPIFLSLLK---DE--FPDV----RLNIISKLDQVNQVIGID-- 392 (587)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~----~~~~~----~~~~l~~~l~~~l~---d~--~~~v----r~~a~~~l~~l~~~~~~~-- 392 (587)
-..||..|++.+-++... +|... +...+.|.+...-. ++ .+++ -+..+-.++.+++.+...
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 899999999988777543 34332 33445554441100 10 1122 112223333333333211
Q ss_pred ---------hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 007842 393 ---------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 393 ---------~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~ 427 (587)
...+.++..+..+..+.++.+..+++.++..+...
T Consensus 1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 23456777777888899999999999999887654
No 251
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.37 E-value=9.7 Score=35.71 Aligned_cols=161 Identities=13% Similarity=0.025 Sum_probs=105.6
Q ss_pred cchhhHHhhhHhhcCCCChHH----HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHh---hh
Q 007842 140 TARVSACGLFHIAYPSAPDIL----KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL---TQ 212 (587)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l---~~ 212 (587)
.+-..|..+...+++..+++. ..-..+-+..++...+..||......+....-.++. ...+.+-+++..+ +.
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLe 148 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLE 148 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccc
Confidence 344456666666666666541 123445566666677788898888888887766655 4445554554444 46
Q ss_pred CCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC------C--------Cccc
Q 007842 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG------P--------EPTR 278 (587)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~------~--------~~~~ 278 (587)
|+..++...+...+..+...++++.++.-++-.+. .++.+|..|...+..-..... . ...+
T Consensus 149 de~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 149 DEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 67778888899999999988887766666655555 457788888877655433222 0 0012
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHH
Q 007842 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTK 306 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 306 (587)
.-++..+...++|++.-|++.++..+-.
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3467778888888888888887776654
No 252
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.34 E-value=2.7 Score=34.56 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHh-hhhHHHHHhhccCCchhHHHHHHHH
Q 007842 450 YSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEMINNPHYLYRMTILRA 498 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~~R~~a~~~ 498 (587)
..+...++++++.++.....+.+. ..+++.+..++.+++. |..|+++
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 445555555555555433333222 2355555555533332 4555444
No 253
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.29 E-value=12 Score=36.57 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842 334 HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (587)
.+-.....++..+....+..- ....-+|.+...+-+....+|..|......+...++.+
T Consensus 149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 149 SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh
Confidence 344444444444444333211 13345667776666777889998877777776666654
No 254
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=17 Score=41.27 Aligned_cols=212 Identities=18% Similarity=0.122 Sum_probs=129.3
Q ss_pred HHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHh---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hhHHH
Q 007842 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDK 436 (587)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~ 436 (587)
.+.+-+...++..+..|+..+..++.....+.... .....+.+++.|.+.+||......+..+...++.. .+.+.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34455556678888888888888887665444322 23334455778889999998888888887766533 34556
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhc--------cC-----------CchhHHH
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMI--------NN-----------PHYLYRM 493 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l--------~d-----------~~~~~R~ 493 (587)
++|...-...|....|-.+|-..+......-... .+...+.+.+.+.+ .| ...++-.
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ 204 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS 204 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence 7777777777888888777776665554311110 12234444443331 11 1234445
Q ss_pred HHHHHHHHhhcccChHHHHh---------hHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHh
Q 007842 494 TILRAISLLAPVMGSEITCS---------RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVEL 561 (587)
Q Consensus 494 ~a~~~l~~l~~~~~~~~~~~---------~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l 561 (587)
.++.++..+....|...-.. .--..+.+.++++++.+|.+..+.+..++.....- .....+.|.+...
T Consensus 205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~ 284 (1312)
T KOG0803|consen 205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGS 284 (1312)
T ss_pred HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHcc
Confidence 56666666665444321111 12246777899999999999999999888765443 2335566777666
Q ss_pred cCCCCccHHHHHH
Q 007842 562 TEDPDVDVRFFAT 574 (587)
Q Consensus 562 ~~d~d~~Vr~~a~ 574 (587)
..+.| -|...+.
T Consensus 285 ~~~~d-~~c~~~w 296 (1312)
T KOG0803|consen 285 IDSLD-HVCSSMW 296 (1312)
T ss_pred ccccc-cccHHHH
Confidence 66666 3333333
No 255
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.09 E-value=2 Score=35.33 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC-Cchh
Q 007842 412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYL 490 (587)
Q Consensus 412 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~ 490 (587)
-+|...+..+..++...-++.. +.+++.+...++. +..-....+..|..+.+.+.. .... ....
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~~ 67 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhHH
Confidence 3566677777777766544443 3466666666665 344445555555555443211 0011 1122
Q ss_pred HHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC----ChhHHHHHHHHHHHhhhhhchHHHHh-hHHHHHHHhcCCC
Q 007842 491 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVDQSMVEK-TIRPCLVELTEDP 565 (587)
Q Consensus 491 ~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~----~~~vR~~~~~~l~~l~~~~~~~~~~~-~i~~~l~~l~~d~ 565 (587)
.|......+..- .+.++..+.+.+... ...+...+++++..+....+...... .+++.+-+++++
T Consensus 68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~- 137 (148)
T PF08389_consen 68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS- 137 (148)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC-
Confidence 233333333332 134444444444332 27889999999999998877775544 488888887744
Q ss_pred CccHHHHHHHHH
Q 007842 566 DVDVRFFATQAI 577 (587)
Q Consensus 566 d~~Vr~~a~~al 577 (587)
++.+..|+.+|
T Consensus 138 -~~~~~~A~~cl 148 (148)
T PF08389_consen 138 -PELREAAAECL 148 (148)
T ss_dssp -CCCHHHHHHHH
T ss_pred -HHHHHHHHHhC
Confidence 44477877765
No 256
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.05 E-value=3.9 Score=39.01 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=61.4
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHH
Q 007842 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLP 517 (587)
Q Consensus 443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~ 517 (587)
..++..+..||..|...+..+........ ....+++.+..+..|.+..+|......+..++....++. +...+++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~ 144 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP 144 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence 34466666666666666666655422111 123455555666666666677766666666554333322 3345566
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 518 VVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 518 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
.+...+.+-.+.+|.-+.+.+..+...+++.
T Consensus 145 yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 145 YISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 6666666666777777777776666666554
No 257
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.04 E-value=0.76 Score=39.72 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=57.1
Q ss_pred HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
....++.+++++.+++..+|..+++.+..+...-=-.+ ...+|.+..|..|+++.+|..|...+..+.+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999876411111 3689999999999999999999999988865
No 258
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=26 Score=39.92 Aligned_cols=149 Identities=9% Similarity=0.012 Sum_probs=90.5
Q ss_pred HHHHHHHH-HhcCCCchHHHHHHHHHHHHHHH--HhC-hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842 435 DKLGALCM-QWLQDKVYSIRDAAANNLKRLAE--EFG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (587)
Q Consensus 435 ~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~ 510 (587)
+.++..+. ....+..|.||.+++..+..++- .++ .+.-.+.+.-.+...++|.+-.+|+.|..++.-+.+......
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 33444444 33456789999999998887753 222 122345677777888999988999999999999876432221
Q ss_pred HHhhHHHHHHhh-cCCCChhHHHHHHHHHHHhhhhhchHH--HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842 511 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 511 ~~~~il~~l~~~-l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
......+..... ....+...+-.++.+++.++-.++... +....+..+-....|+ ..++..+.+++..+....
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 111122222221 223355566778888888887766542 2223333333333444 458888888888877654
No 259
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=92.01 E-value=26 Score=39.79 Aligned_cols=210 Identities=14% Similarity=0.113 Sum_probs=115.0
Q ss_pred HHHHHHHHHhHHHHHhhhCHH----HH--HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHH---hHHHH
Q 007842 294 AEVRIAAAGKVTKFCRILNPE----LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIE---QLLPI 362 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~----~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~---~l~~~ 362 (587)
..+|..+..+|-.+. +|.. .. ...++..+...+......+....+..|.++....+.. ..+. .+.-+
T Consensus 365 ~aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL 442 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL 442 (2195)
T ss_pred HHHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence 557777777776543 2211 00 1234455554445455566666677777776544321 1111 12223
Q ss_pred HHHhhcCCChHHHHHHHHhhhhhhhhhchhh----HHhhHHHHHHHHhcCCChHHHHHHHH----HHHHHHHhhC-hhhh
Q 007842 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIE----YIPLLASQLG-VGFF 433 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~~~~~~~~vR~~~~~----~l~~l~~~~~-~~~~ 433 (587)
..-.+....+..-.+++.+|-++..+...+. -.+..+-.|..++.-+.+.--.++++ .|..+...+. .+.+
T Consensus 443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 3334444444555566666666655443221 01333444444443222211122222 2222222221 1112
Q ss_pred -----HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH--HH-hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842 434 -----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (587)
Q Consensus 434 -----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~ 505 (587)
...++..+++.|+..+..|-..++.+|+++......+ ++ ..-.++.+..++.+++..+-+.+..+|.++...
T Consensus 523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 2346788899999999999999999999998654433 12 244577888888888888888888898888753
No 260
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.97 E-value=1.1 Score=37.46 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=80.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC---hHHH-HhhHHHHHHhh
Q 007842 447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEIT-CSRLLPVVINA 522 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~---~~~~-~~~il~~l~~~ 522 (587)
....++|..+.-++..+.+..+.+ +.+.+-+.+...+.+.+..-...++.++..+.+... ..-+ .+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 356678888888887776443333 445555555555555555566777777777765322 1111 35566777766
Q ss_pred cC--CCChhHHHHHHHHHHHhhhhhc-hHHHHhhHHHHHHHhc-CCCCcc-HHHHHHHHHHH
Q 007842 523 SK--DRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELT-EDPDVD-VRFFATQAIQS 579 (587)
Q Consensus 523 l~--d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~i~~~l~~l~-~d~d~~-Vr~~a~~al~~ 579 (587)
.. .++..+...+++++..-+..-. ...+.+...+.|.++. ++++.. +|..|.-+|-+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 66 6677888888888876543321 2234566778888876 455555 77777766644
No 261
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.87 E-value=0.34 Score=29.48 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=28.1
Q ss_pred HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 551 EKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 551 ~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
....+|.|.+++.+++.+|+..|+.||+.|+
T Consensus 10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999886
No 262
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=91.82 E-value=8.6 Score=33.90 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=86.4
Q ss_pred hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC--CCCcchhhHHhhhHhhcCCCChHHHHH
Q 007842 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG--EWFTARVSACGLFHIAYPSAPDILKTE 163 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (587)
.+..++..+..++.-+.|-.|+..+........++. ++.+..+..+ .|..+-..+..+++.+..+ ...
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-----~~~ 115 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD-----YPE 115 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-----Chh
Confidence 344555566777767788888887777655555443 3333333332 2444444455555444332 123
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
+.+.+.....+++..+|+.++-+.-.+... ...+.+..++..+++|+..-|+++..-.|..++..-
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d 181 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN 181 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC
Confidence 467888889999999999988654443332 223567778888899999999999888888887763
No 263
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.48 E-value=3.1 Score=33.60 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=52.1
Q ss_pred hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC---CChhHHHHHHHHHHHhhhhhch
Q 007842 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d---~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
..+..+..-++++++.+...|+..+..+.+++|..+. ...++..+.+++.. .++.||..++..+..+...++.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4455566667777888888888888888888777442 23455556666654 4778999999999988877765
No 264
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.35 E-value=1.6 Score=33.94 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=38.8
Q ss_pred HHHHHHHhh-hCCchhHHHHHHHHHHHHhhhcChhh-h--hhchHHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 007842 203 IMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 203 l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~-~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~ 270 (587)
++..+..++ .+.++.+-..|+.-++.+++..|... . .-.....+.++++++++.||..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344444444 23345555566666777666655421 1 12245566777788888888888888877654
No 265
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.18 E-value=3.3 Score=33.74 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=57.2
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCCC-Chh---HHHHHHHHHHHhhhhh
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDR-VPN---IKFNVAKVLQSLIPIV 545 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~-~~~---vR~~~~~~l~~l~~~~ 545 (587)
...+..+.+-++++++.+...|+..+..+.+++|..+. ...++..+.+++.++ ... ||..++..+..+...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45666777778889999999999999999998887653 344777777766543 222 8999999999998887
Q ss_pred chH
Q 007842 546 DQS 548 (587)
Q Consensus 546 ~~~ 548 (587)
+..
T Consensus 121 ~~~ 123 (140)
T PF00790_consen 121 KSD 123 (140)
T ss_dssp TTS
T ss_pred CCC
Confidence 544
No 266
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=32 Score=39.18 Aligned_cols=232 Identities=13% Similarity=0.127 Sum_probs=115.9
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCcccc---chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHh
Q 007842 253 KSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL 327 (587)
Q Consensus 253 ~~~~vR~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~ 327 (587)
.++..|..|.+.++.++.....+.... .....+.++..|.+..||......+..+...++.. ++.+.++|...-.
T Consensus 53 kD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~ 132 (1312)
T KOG0803|consen 53 RDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGG 132 (1312)
T ss_pred cChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhe
Confidence 445566666666666665433222111 12233455566777777777777776666655543 4555555555555
Q ss_pred ccCCcHHHHHHHHHHHHccccccc-h---hHHHHhHHHHHHHhhc--------C-----------CChHHHHHHHHhhhh
Q 007842 328 SSDSSQHVRSALASVIMGMAPLLG-K---DATIEQLLPIFLSLLK--------D-----------EFPDVRLNIISKLDQ 384 (587)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~l~--------d-----------~~~~vr~~a~~~l~~ 384 (587)
..|....|-.+|...+......-. . ..+.+.+.+.+.+.+- | ....|-..++.++..
T Consensus 133 ~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~ 212 (1312)
T KOG0803|consen 133 QFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLK 212 (1312)
T ss_pred ecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHH
Confidence 556666666655555544332100 0 0112223333332210 1 112233344555555
Q ss_pred hhhhhchhhHHh---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh---hhHHHHHHHHHHhcCCCchHH
Q 007842 385 VNQVIGIDLLSQ---------SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSI 452 (587)
Q Consensus 385 l~~~~~~~~~~~---------~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~v 452 (587)
+....|...-.. .--..+-.+.+++.+.+|.+..+.+..+.+.+..- .-..++.|.+.....+.+ -|
T Consensus 213 l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~ 291 (1312)
T KOG0803|consen 213 LFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HV 291 (1312)
T ss_pred HHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cc
Confidence 554444321111 01133455678889999999988888877665322 123456666666665555 33
Q ss_pred HHHHHHHHHHHHHHhChHHH------hhhhHHHHHhhcc
Q 007842 453 RDAAANNLKRLAEEFGPEWA------MQHITPQVLEMIN 485 (587)
Q Consensus 453 r~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~ 485 (587)
-......+..+...+..+|+ ...++|.+.+.+.
T Consensus 292 c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 292 CSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred cHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 33333333323344444432 3456777766655
No 267
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=90.98 E-value=20 Score=36.54 Aligned_cols=155 Identities=8% Similarity=0.004 Sum_probs=87.8
Q ss_pred hhhhHHHHHHHHhhhCCch--hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc--------cCCcHHHHHHHHHHHHH
Q 007842 198 HLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--------QDKSWRVRYMVANQLYE 267 (587)
Q Consensus 198 ~~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--------~d~~~~vR~~a~~~l~~ 267 (587)
+...+++.-+-.-+.+.+| .--..-+.+++++...++.......++..++.++ .|...-|-....-.+|+
T Consensus 477 Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ 556 (1053)
T COG5101 477 DTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ 556 (1053)
T ss_pred hHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc
Confidence 4445555555555555544 3334456677777777766544445555554433 23222221111112222
Q ss_pred HHHHhC-CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----------HHHHHhHhHHHHHhccCCcHHHH
Q 007842 268 LCEAVG-PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----------ELAIQHILPCVKELSSDSSQHVR 336 (587)
Q Consensus 268 ~~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~i~~~l~~~~~d~~~~vr 336 (587)
.-..+. .......++.-+.+++.+...-|+..|+..+-.+...++. +.+...++..+.+...|-.+.-.
T Consensus 557 YpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~ 636 (1053)
T COG5101 557 YPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQK 636 (1053)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHH
Confidence 111110 0111233555556666666788999999999999887753 34555666666677778888888
Q ss_pred HHHHHHHHccccccch
Q 007842 337 SALASVIMGMAPLLGK 352 (587)
Q Consensus 337 ~~a~~~l~~l~~~~~~ 352 (587)
....++++.+.+..++
T Consensus 637 htfYeAcg~vIse~p~ 652 (1053)
T COG5101 637 HTFYEACGMVISEVPK 652 (1053)
T ss_pred hHHHHHHhHHHhccch
Confidence 8888888877665554
No 268
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=90.68 E-value=0.92 Score=37.87 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 007842 252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
|+.-.+|.+|.+++..+...+........+.+.+...++| +.++|..+...+..++...+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence 4566788888888888877666655556677778888888 78888888888887766443
No 269
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.41 E-value=24 Score=36.49 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=81.8
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-
Q 007842 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 314 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 314 (587)
..+..+++.++...|.+.++.++++...+..+. ..+.++..+.+.+.|..+-+|..|+..+..+...-..-
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 345667888899999999999999998776433 22357888888899999999999999998887642211
Q ss_pred HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccc
Q 007842 315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (587)
Q Consensus 315 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~ 347 (587)
.-..++...+...++|.+.-||+.+++.++.+.
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 112567778888899999999999999988764
No 270
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.38 E-value=17 Score=34.71 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHhhcCCChHHHHHHHHhhhhhhhhhc---hh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----
Q 007842 363 FLSLLKDEFPDVRLNIISKLDQVNQVIG---ID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---- 432 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---- 432 (587)
+....+..+-+|-..|..++..+..... .+ ...+.+...+..++.++|+-+|...++.++.+.-.-..-.
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 4566777788888888888777654321 11 1124555667778899999999999999998864321111
Q ss_pred --hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007842 433 --FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (587)
Q Consensus 433 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
-.+.-+.+++.++.|++..+|..|.+.+..++..
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 1244577788899999999999999999988864
No 271
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.38 E-value=8.7 Score=31.42 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh----hhhhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCC
Q 007842 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE 275 (587)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~ 275 (587)
..+..+..-++..++.|...|+..+..+...++.. .....++..+.+++++ .+..||..+...+...+..++.+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34444444555667777777777777777777752 2233455556666666 56777777777777777776643
No 272
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=15 Score=33.91 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=58.2
Q ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HHHHhHh
Q 007842 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHIL 321 (587)
Q Consensus 246 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~ 321 (587)
+..++.+.+|.||..|++.+..+... +-. ......++.+.+++++.++ -.-|+.++.+++...+-. .....++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44566777788888887666554433 211 1123467777777777766 344566666666543221 2222344
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842 322 PCVKELSSDSSQHVRSALASVIMGMAPL 349 (587)
Q Consensus 322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
..+...+.|+.|..-...+..+.+++..
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 4455556677666666667777766643
No 273
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=36 Score=38.39 Aligned_cols=217 Identities=12% Similarity=0.110 Sum_probs=118.4
Q ss_pred HhhcCCChHHHHHHHHhhhhhhhhhchhhH--HhhHHHHHHHHhc---CCChHHHHHHHHHHHHHH----HhhChhhhHH
Q 007842 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE---DRHWRVRLAIIEYIPLLA----SQLGVGFFDD 435 (587)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~---~~~~~vR~~~~~~l~~l~----~~~~~~~~~~ 435 (587)
.....+..+||...++++-.+.+..|...+ .+.++..+..... .+.-.+-......+..+. +.++.+.+.
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~- 927 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL- 927 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH-
Confidence 344556678999999999999888776532 2333444433322 122222222333333332 222222222
Q ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCh-------H-----------------H-----HhhhhHHHHHhhcc
Q 007842 436 KLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------E-----------------W-----AMQHITPQVLEMIN 485 (587)
Q Consensus 436 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~-----------------~-----~~~~l~~~l~~~l~ 485 (587)
.++..+..+- +..+.++-..|+..+..+...+.. + + ..--++.++.+...
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 2333333322 445666666777776666543221 0 0 01123455666678
Q ss_pred CCchhHHHHHHHHHHHhhcccCh----HH----HHhhHHHHHHhhcC---CC--C----hhHHHHHHHHHHHhhhhhchH
Q 007842 486 NPHYLYRMTILRAISLLAPVMGS----EI----TCSRLLPVVINASK---DR--V----PNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 486 d~~~~~R~~a~~~l~~l~~~~~~----~~----~~~~il~~l~~~l~---d~--~----~~vR~~~~~~l~~l~~~~~~~ 548 (587)
|+...||..|++.+-.+....|. .. .+..++|.+-..-. ++ . .+--...+-+++.|+.-+...
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 88899999999998888765443 21 24445554442100 11 0 111133444444444433321
Q ss_pred -----------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 549 -----------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 549 -----------~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
..-+.++..+..+..|..+++...|.+++.++-.
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 2336788888999999999999999999988653
No 274
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=21 Score=35.79 Aligned_cols=387 Identities=14% Similarity=0.137 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (587)
.++.++..+..+...++ .+|...+-++..++-..+ .+.+.+...+....+.... ++ .+-.+.+.+|.+...
T Consensus 60 lrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-~~-----~lLeiL~VlPEE~~~ 130 (559)
T KOG2081|consen 60 LRDSLITHLKELHDHPD-VIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-VP-----ILLEILKVLPEETRD 130 (559)
T ss_pred HHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-HH-----HHHHHHHhCcHhhcc
Confidence 45556666666655554 888888888888887763 3444444444444433332 22 222333334333111
Q ss_pred hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC---hHHHHHHHHHhHHHHHh--hhCHH
Q 007842 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN---EAEVRIAAAGKVTKFCR--ILNPE 314 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~--~~~~~ 314 (587)
.... .. ..-|......++. ....++..+..++++. +..+-..++++++.... .+..+
T Consensus 131 ~~~~-----~~----a~Rr~e~~~~l~~---------~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d 192 (559)
T KOG2081|consen 131 IRLT-----VG----ANRRHEFIDELAA---------QVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPD 192 (559)
T ss_pred hhhh-----hh----hhhHHHHHHHHHH---------hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHH
Confidence 1100 00 0111111111111 0123444455555432 24555666666666554 33333
Q ss_pred HHHH--hHhHHHHHhccCCcHHHHHHHHHHHHcccccc-----c-h---hH-HHHhHHHHHHHh-hcCCChHHHHHHHHh
Q 007842 315 LAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLL-----G-K---DA-TIEQLLPIFLSL-LKDEFPDVRLNIISK 381 (587)
Q Consensus 315 ~~~~--~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-----~-~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~ 381 (587)
.+.. .++..+...+++ ...-..+.+++..+.... + + .. ....++|...++ ....+.+-+.+..+.
T Consensus 193 ~v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RI 270 (559)
T KOG2081|consen 193 QVLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRI 270 (559)
T ss_pred HHHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHH
Confidence 2211 223333334442 222333333332221111 0 0 00 011223333322 233445555566666
Q ss_pred hhhhhhhhc------hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh-------hhHHH---HHHHHHHhc
Q 007842 382 LDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-------FFDDK---LGALCMQWL 445 (587)
Q Consensus 382 l~~l~~~~~------~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~-------~~~~~---l~~~l~~~l 445 (587)
+..+++.+. ++.. -.++..+.-....++|++-...+..+..+.+.+-.. .|.++ ++..+....
T Consensus 271 Ftel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~ 349 (559)
T KOG2081|consen 271 FTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHV 349 (559)
T ss_pred HHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHc
Confidence 666555432 1111 122333344456777777776666666665544211 12222 222222222
Q ss_pred C------------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842 446 Q------------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513 (587)
Q Consensus 446 ~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~ 513 (587)
+ ++-..-|......+..+....|.+...+.+.-.+.+ +++.|+.-++++..+..+++++.++. +
T Consensus 350 qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~ 425 (559)
T KOG2081|consen 350 QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--N 425 (559)
T ss_pred cCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--c
Confidence 1 223467888888888888888875433333333332 46689999999999999999887753 5
Q ss_pred hHHHHHHhhcCC--CChhHHHHHHHHHHHhhhhhchH-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 514 RLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 514 ~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.++|.+++.+-+ ....+|.+++..+|.+.+.+... ...+-++..+.+...+.. ....|+.|+..++.
T Consensus 426 ~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 426 TIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred chHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 677777776432 24449999999999998876543 233444455555444444 55566666666554
No 275
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.13 E-value=0.57 Score=28.66 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
+.+...+...+.|+++.||.+|+..
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4566667777788888888887764
No 276
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.85 E-value=0.37 Score=29.51 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=10.0
Q ss_pred hHHHHHHhcCCChHHHHHHHHH
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAG 302 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~ 302 (587)
+...+...+.|+++.||.+++.
T Consensus 19 v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 19 VQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHhcCCChHHHHHHHH
Confidence 4444444444444444444443
No 277
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.59 E-value=3.3 Score=33.41 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=43.8
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCCCC--hhHHHHHHHHHHHhhhhhch
Q 007842 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~ 547 (587)
+..+..-++++++.+...|+..+..+.+++|..+. ...++..+.++++++. +.||..++..+..+...+..
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 44444445556666666666666666666665432 3445666666655542 33888888888888777654
No 278
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=89.54 E-value=11 Score=32.88 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=49.6
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
+.+.....+++..+|+.+...+...... +...+.+++++..+..|++..|+.+....|..++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 6777788888888888887777665554 3456777888888888888888888888888877663
No 279
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=89.19 E-value=46 Score=38.00 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=59.1
Q ss_pred HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
...++..|+..|+..+-.|-.++|.+|.++...-..+ .+....++.|.+|...+...+-+.++.||..+...
T Consensus 528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 3567888999999999999999999999998765444 35566789999999999999999999998877543
No 280
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=88.70 E-value=22 Score=33.79 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHHHhh-------ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842 409 RHWRVRLAIIEYIPLLASQL-------GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (587)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~-------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 469 (587)
..|..|....+.+..+.+.. +++.+ ..++..+...++++..+|-..++.++..+......
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999888763 23333 45678888899999999999999999999886544
No 281
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=88.47 E-value=36 Score=35.80 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=70.9
Q ss_pred chHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCH-------HH-HHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 007842 280 DLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP-------EL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (587)
Q Consensus 280 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 350 (587)
.++..+..++. ..++.+-++++.+|..+....+. .. ..+..+|.+..++...+..|..+++.+|.+++...
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 46666555554 34577888888888877654321 11 23567888888888888888888888988887655
Q ss_pred c-hhHHHHhHHHHHHHhhcCCC------hHHHHHHHHhhhhhh
Q 007842 351 G-KDATIEQLLPIFLSLLKDEF------PDVRLNIISKLDQVN 386 (587)
Q Consensus 351 ~-~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~~l~ 386 (587)
. ++.+..+.+|-+...+.+.. +++-..++..+..+.
T Consensus 598 rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 598 RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 3 33445567788888876653 345555555555544
No 282
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=88.31 E-value=18 Score=36.55 Aligned_cols=142 Identities=18% Similarity=0.122 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh----hh
Q 007842 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CV 239 (587)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~ 239 (587)
....+..-..|-++.+|..+...++...+.++.-...-..+...--++.|....||....+++..+....+... ..
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 33455566788899999999999998888774322222234444556789999999999999999998877532 22
Q ss_pred hchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842 240 AHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (587)
Q Consensus 240 ~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
+.....+.. +..|.+- ||..+++.+..+... |-- ...-+.++..++=|..+.-|....+.+..+++
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~L--~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GVL--SSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh-ccc--chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 222233333 3345555 999999998876542 211 11122333444555555544444444444443
No 283
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.97 E-value=9.1 Score=30.87 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=68.4
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (587)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~ 482 (587)
.+++|..-..++..+..- +.-....+..+...++.+++.++..|+..|..+++..|..+. ...++..+..
T Consensus 14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 457777655554444321 111334567778888999999999999999999999888652 2356666777
Q ss_pred hccC---CchhHHHHHHHHHHHhhcccCh
Q 007842 483 MINN---PHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 483 ~l~d---~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
++.. .+..+|..++..+......++.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 7654 4678999999999988877664
No 284
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=41 Score=35.94 Aligned_cols=324 Identities=13% Similarity=0.074 Sum_probs=163.2
Q ss_pred hHHhhhHhhcCCCChHHHH---HHHHHHHHh-cCCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhhCCchhH
Q 007842 144 SACGLFHIAYPSAPDILKT---ELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSV 218 (587)
Q Consensus 144 ~a~~~l~~~~~~~~~~~~~---~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~v 218 (587)
+++..+.....+.+..... .++...... ..-.++..-..+...+|.++..+++ +.+.+..+|.+.+.+......
T Consensus 486 aci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s- 564 (982)
T KOG2022|consen 486 ACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES- 564 (982)
T ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH-
Confidence 3445555666666554322 333333222 2234778888899999999998876 456777788888777533332
Q ss_pred HHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccC--CcHHHHHHHHHHHHHHHHHhCCCccccch---HHHHHHhc--
Q 007842 219 RLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPTRMDL---VPAYVRLL-- 289 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~~l---~~~l~~~l-- 289 (587)
..+...+..+++.++.+ .+...++......+.. -....|....+.+|.+.....++..+..+ +..+..-+
T Consensus 565 -~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~ 643 (982)
T KOG2022|consen 565 -EQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEI 643 (982)
T ss_pred -HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHH
Confidence 23455577777776542 1223333334443332 34568888999999998877654444332 22222211
Q ss_pred --C-C-ChHHHHHHHHHh---HHHHHhhhC----------------------HHHHHHhHhHHHHHhcc--CCcHHHHHH
Q 007842 290 --R-D-NEAEVRIAAAGK---VTKFCRILN----------------------PELAIQHILPCVKELSS--DSSQHVRSA 338 (587)
Q Consensus 290 --~-d-~~~~vr~~a~~~---l~~l~~~~~----------------------~~~~~~~i~~~l~~~~~--d~~~~vr~~ 338 (587)
. + ++++-+...+.. +..+...+. .-.+..+++|.+.+.+. -.+..|-.+
T Consensus 644 ~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~ 723 (982)
T KOG2022|consen 644 NLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEA 723 (982)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 1 1 122222222222 233333221 01234566777766553 123455566
Q ss_pred HHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHH--------hhHHHHHHHHhc
Q 007842 339 LASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--------QSLLPAIVELAE 407 (587)
Q Consensus 339 a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~l~~l~~~~~ 407 (587)
+|.....=....+. ..+.+.+.+++..+........-.-...++......-+..... +..+-.+.+---
T Consensus 724 ~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f 803 (982)
T KOG2022|consen 724 SCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPF 803 (982)
T ss_pred HHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCC
Confidence 55554432222222 2234555666666443331111111111111111111100000 111111111111
Q ss_pred CCChHHHHHHHHHHHHHHHhhC------hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842 408 DRHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (587)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 469 (587)
.+++++-...+..+..+.+..+ ...|...+.+..+.+++.+.+..-.++.+.+..+....+.
T Consensus 804 ~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 804 SNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred CCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 2456666666666666665432 2234566777788899999888888888888887765443
No 285
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=87.75 E-value=36 Score=35.03 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=55.4
Q ss_pred HHHHHHHHhhChhhhHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh----hccCCchhHHH
Q 007842 419 EYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE----MINNPHYLYRM 493 (587)
Q Consensus 419 ~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~----~l~d~~~~~R~ 493 (587)
..++.+.+.+.++.+.+ ++-.+..++ .++...+|-+.+..++.+.+.+-++...+.+.|.+.. ++.|.+|.+++
T Consensus 463 ~l~~~~~~~l~~~~i~q-v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q 541 (559)
T PF14868_consen 463 SLLSFFIQLLDPQLIEQ-VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ 541 (559)
T ss_pred HHHHHHHHhcChHHHHH-HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence 33444444444444333 333334444 4555668888888888888766555455556665544 36888999999
Q ss_pred HHHHHHHHhhccc
Q 007842 494 TILRAISLLAPVM 506 (587)
Q Consensus 494 ~a~~~l~~l~~~~ 506 (587)
.|+++++.+++..
T Consensus 542 ~ALeAF~~FAe~T 554 (559)
T PF14868_consen 542 HALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHhccC
Confidence 9999999988744
No 286
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=87.73 E-value=8.1 Score=31.50 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=44.3
Q ss_pred HHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHH----HhhHHHH-HHhhcCC---CChhHHHHHHHHHHHhhhhhch
Q 007842 477 TPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASKD---RVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 477 ~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~d---~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
+..+.+-++ ++++.+..-|+..+..+.+++|..+. ...++.. +.+++.+ .+..||..++..+..+...++.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 333333333 34666666667777777777776442 3455554 6666542 3457888888888888877654
Q ss_pred H
Q 007842 548 S 548 (587)
Q Consensus 548 ~ 548 (587)
+
T Consensus 120 ~ 120 (141)
T cd03565 120 S 120 (141)
T ss_pred C
Confidence 4
No 287
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.41 E-value=47 Score=35.97 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---H--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--
Q 007842 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---W--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-- 508 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~-- 508 (587)
+++.-...++++++..+|..|+.++......+... . .....+|.+++.+.++|+-+-+.|+.++..++...|.
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 35555677889999999999999988766554332 1 2456788888889999999999999999999988875
Q ss_pred -HHHHhhHHHHHHhhcCCC
Q 007842 509 -EITCSRLLPVVINASKDR 526 (587)
Q Consensus 509 -~~~~~~il~~l~~~l~d~ 526 (587)
+.+...++|.+..+++|.
T Consensus 883 ~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 335677788777666654
No 288
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.11 E-value=11 Score=28.91 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=30.3
Q ss_pred CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChhh
Q 007842 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~~~ 432 (587)
....-|..++.+++.+.+ .+.+.. ....|.+...+.. +.+..|..+++++..+.+.++.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i-~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHI-SSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHH
Confidence 345566667777777666 333221 2333333332221 122566666666666666655443
No 289
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=87.10 E-value=13 Score=29.31 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh-hccCCchh-HHHHHHHHHHHhhccc
Q 007842 434 DDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYL-YRMTILRAISLLAPVM 506 (587)
Q Consensus 434 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~-~R~~a~~~l~~l~~~~ 506 (587)
...++|.+...+. ....+.|.++...++.++....- .+.++..+.+ +.++.... ....++.++..+.+.-
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L---~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL---SDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4567788888887 77788888888888888875442 2333333333 22322221 1345666677766544
No 290
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.01 E-value=22 Score=31.68 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=52.2
Q ss_pred HhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHH
Q 007842 123 VDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (587)
Q Consensus 123 ~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~ 192 (587)
--++.|++.....+. .+.-|.++.+.++.+.+.-+.+ ...+++|++...++..+..-+..+...++++..
T Consensus 122 PlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 122 PLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred hhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 345677776555544 4567888999999888877766 335788999999998888888888877777665
No 291
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.92 E-value=19 Score=32.96 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCc-----hHHHHHHHHHHHHHHHHhChHHHhhhhHHHH-HhhccCCchhHHHHHHHHHHHhhcccChHHH
Q 007842 438 GALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQV-LEMINNPHYLYRMTILRAISLLAPVMGSEIT 511 (587)
Q Consensus 438 ~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l-~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~ 511 (587)
+|.++..+.+++ ..++ .++..++.+++..+..... .++... ...+++.+..+++.+ ..+...+.++ +
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La-~il~~ya~~~fr~~~dfl~~v~----~~l~~~f~P~-~ 185 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLA-RILSSYAKGRFRDKDDFLSQVV----SYLREAFFPD-H 185 (262)
T ss_pred HHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHH-HHHHHHHhcCCCCHHHHHHHHH----HHHHHHhCch-h
Confidence 455555555544 3444 4456777777654443221 112111 111223222233322 2233333222 2
Q ss_pred HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH-HHHhhHHHHHHHhcCC
Q 007842 512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTED 564 (587)
Q Consensus 512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d 564 (587)
...++..+..++.++.+++|..+++.|..+.+...-. .+..+++..+.+++..
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t 239 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC
Confidence 3456777888888888999999999999888765433 2445566666665543
No 292
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.79 E-value=25 Score=32.18 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccC--CchhHHHHHHHHHHHhhc
Q 007842 450 YSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAP 504 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~ 504 (587)
..+|..|+..++..++.++..+ ....+...+.+.+-| ..+.....|++++..+..
T Consensus 301 ~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 301 YALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 4699999999999999888764 234455555444333 345677888888887765
No 293
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=86.63 E-value=21 Score=31.11 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=28.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007842 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
+.+.....+++.-+|+.+...+...... +.....+++.+...+.|++.-||++...+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444333322 112333444444444445555555555555555444
No 294
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=86.56 E-value=1.3 Score=24.57 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC
Q 007842 490 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 525 (587)
Q Consensus 490 ~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d 525 (587)
.+|..++.+|+.+.. +...+.+.+.++|
T Consensus 2 ~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD--------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence 456666666666532 3344555555444
No 295
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=86.56 E-value=42 Score=34.57 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=61.7
Q ss_pred HHHHHHhhcccChHHHHhhHHHHHHhhc-CCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHH----hcCCCCccHH
Q 007842 496 LRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE----LTEDPDVDVR 570 (587)
Q Consensus 496 ~~~l~~l~~~~~~~~~~~~il~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~----l~~d~d~~Vr 570 (587)
+..++.+.+.+.++.+ ..++-.+...+ .++...+|.+.+.-++.+++..-++..+..+.|.+.. ++.|+.|-++
T Consensus 462 L~l~~~~~~~l~~~~i-~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~ 540 (559)
T PF14868_consen 462 LSLLSFFIQLLDPQLI-EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLH 540 (559)
T ss_pred HHHHHHHHHhcChHHH-HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHH
Confidence 3344444455555433 44555555555 5566679999999999998877666555666666655 7899999999
Q ss_pred HHHHHHHHHHHH
Q 007842 571 FFATQAIQSIDH 582 (587)
Q Consensus 571 ~~a~~al~~l~~ 582 (587)
..|..|++.+++
T Consensus 541 q~ALeAF~~FAe 552 (559)
T PF14868_consen 541 QHALEAFGQFAE 552 (559)
T ss_pred HHHHHHHHHHhc
Confidence 999999999886
No 296
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=86.53 E-value=2.3 Score=35.55 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=50.5
Q ss_pred CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhc--
Q 007842 214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLL-- 289 (587)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l-- 289 (587)
+.-++|++|.+++-.+.+.+........+++.+...+.| +..+|..+...+.+++...+.... .+.+++.+...+
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 344567777777766666555443344556666666766 667777777777776654322111 223444444443
Q ss_pred --CC--------ChHHHHHHHHHhHHHHHhhh
Q 007842 290 --RD--------NEAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 290 --~d--------~~~~vr~~a~~~l~~l~~~~ 311 (587)
++ ...+..++++++...+...+
T Consensus 118 k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 118 KLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp ---TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 21 12344555666666664443
No 297
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.49 E-value=12 Score=34.07 Aligned_cols=54 Identities=11% Similarity=0.221 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhhhhchHH--HHhhHHHHHHH--hcCCCCccHHHHHHHHHHHHHH
Q 007842 529 NIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVE--LTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 529 ~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~--l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.+|..|+..++..+..++... ....+...+.+ +-..+.....+.|.++++.+.+
T Consensus 302 alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 302 ALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 466677777766666665542 22334433333 2233344556666666665554
No 298
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=86.02 E-value=11 Score=29.36 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=24.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~ 432 (587)
..++..+..-+.+++|++...++..+..+.+..|..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 3455556666666777777777777777777666543
No 299
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.00 E-value=17 Score=29.62 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh----hhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCC
Q 007842 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 275 (587)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~ 275 (587)
..+..+..-++..++.+...|+..|..+...++... ....++..+.++.+ ..++.||..++..+...+..++.+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 344444555556677777777777777777776521 22334444444443 456678887888777777776654
No 300
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.95 E-value=17 Score=29.48 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=67.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHH
Q 007842 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 481 (587)
Q Consensus 406 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~ 481 (587)
+.+++|..-..++..+.. ...| ....+..+...++++++.|...|+..|..+++..|..+. ...++..+.
T Consensus 14 l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 346778765555554432 1112 233556677788899999999999999999999988753 356777777
Q ss_pred hhccC------CchhHHHHHHHHHHHhhcccC
Q 007842 482 EMINN------PHYLYRMTILRAISLLAPVMG 507 (587)
Q Consensus 482 ~~l~d------~~~~~R~~a~~~l~~l~~~~~ 507 (587)
.++.. .+..||...+..+..-...++
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 77643 467899999888888776554
No 301
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=84.85 E-value=30 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~ 428 (587)
-..+.....+.++.+|..++++++.+.-..
T Consensus 45 K~~Il~~~~~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 45 KDRILSLWDSENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp HHHHHHGGGSSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 344555677788899999999998887654
No 302
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=84.36 E-value=3 Score=41.19 Aligned_cols=109 Identities=9% Similarity=0.076 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH--
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-- 509 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~-- 509 (587)
..+.+.+++.+.+++..|...+...+.+++- .+|..+....++..+..++...+...|..+.+.+.++.-.+...
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 3477888899999888777777776666643 44556677889999999888888899999999999887655443
Q ss_pred --HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842 510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 510 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
...+.=+..++...+||...|....++.+.++.-
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 2233345678888999999999999999988754
No 303
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.35 E-value=21 Score=29.10 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhCCc-h-h--HHHHHHHHHHHHhh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQ-D-S--VRLLAVEGCAALGK 231 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~-~-~--vr~~a~~~l~~l~~ 231 (587)
.-++....|..-+.+.++.+...++..+..++++.|... ....++..+..++.+.. . . ||..+...+..-+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 335555566666666777777777777777777765422 12224444444443322 1 1 66666666665555
Q ss_pred hcC
Q 007842 232 LLE 234 (587)
Q Consensus 232 ~~~ 234 (587)
.+.
T Consensus 119 ~f~ 121 (140)
T PF00790_consen 119 AFK 121 (140)
T ss_dssp HTT
T ss_pred HHC
Confidence 553
No 304
>PF05536 Neurochondrin: Neurochondrin
Probab=84.26 E-value=55 Score=33.91 Aligned_cols=175 Identities=12% Similarity=0.147 Sum_probs=111.8
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChH-HHHHHHHHhHHHHHhhh-CHHHH-HHhHhHHHHH
Q 007842 254 SWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRIL-NPELA-IQHILPCVKE 326 (587)
Q Consensus 254 ~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~~~-~~~i~~~l~~ 326 (587)
....+..++..++.++. .++. ..-.-+|.+.+.+...+. .+-..|..+|..++..- |.+.+ ....++.+.+
T Consensus 70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 34567778888887775 2211 122468888888876665 88888899998888432 22222 2345666666
Q ss_pred hccCCcHHHHHHHHHHHHccccccchh------HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--------h
Q 007842 327 LSSDSSQHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D 392 (587)
Q Consensus 327 ~~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~ 392 (587)
.+.+ ++.....+...+..+....+.+ .....+++.+...+.......+..++..++.+....+. +
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 6555 5566777777777765555421 22335566666666666666777778888877765521 1
Q ss_pred hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChh
Q 007842 393 LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG 431 (587)
Q Consensus 393 ~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~ 431 (587)
.....+...+..++++ ..+..|..++.....+.+..|.+
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 2344555666666655 46788999999888888887743
No 305
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=50 Score=33.36 Aligned_cols=249 Identities=13% Similarity=0.133 Sum_probs=131.6
Q ss_pred CCChHHHHHHHHHhHHHHHhhhC------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHH
Q 007842 290 RDNEAEVRIAAAGKVTKFCRILN------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLL 360 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~ 360 (587)
...+.+-+.+..+.+..+++... ++.+ -.++..+.-....++++|-.+.......+.+.+.. +.....+-
T Consensus 257 ~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~fr 335 (559)
T KOG2081|consen 257 AGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFR 335 (559)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhH
Confidence 34455566666777776666442 2211 22344445555677788877777666666554321 11222222
Q ss_pred HHHHHhh-------c------------CCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007842 361 PIFLSLL-------K------------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (587)
Q Consensus 361 ~~l~~~l-------~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l 421 (587)
|.+.+++ + ++..+.|......+..+.-.+|.+.-.+.+.-.+.+ ....|+.-++++..+
T Consensus 336 py~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l 413 (559)
T KOG2081|consen 336 PYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFIL 413 (559)
T ss_pred HHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 3332222 1 122456778888888887777766433333333322 467899999999999
Q ss_pred HHHHHhhChhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHhChHH-HhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842 422 PLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRA 498 (587)
Q Consensus 422 ~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~ 498 (587)
..+++.+.++. ..++|-+++.+. +....+|..++..+|.+.+-+.... ..+.+...+...+.... .--++..+
T Consensus 414 ~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~ 489 (559)
T KOG2081|consen 414 RAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALA 489 (559)
T ss_pred HHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHH
Confidence 99998876542 234444444442 3445599999999999987554321 22333444444444433 33334444
Q ss_pred HHHhhcccChHH--HH---hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 499 ISLLAPVMGSEI--TC---SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 499 l~~l~~~~~~~~--~~---~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
+..+...+.... .. ..+...+.....+ +..-. .++.+..++.+.+..
T Consensus 490 ~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~--~e~a~-l~~~~s~i~~~lp~~ 541 (559)
T KOG2081|consen 490 FHRICSACRVQMTCLIPSLLELIRSLDSTQIN--EEAAC-LLQGISLIISNLPAH 541 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCHh
Confidence 444443222110 01 1122222222222 33333 667777776666544
No 306
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=83.43 E-value=46 Score=32.31 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 007842 105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184 (587)
Q Consensus 105 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~ 184 (587)
+++..+-.+..+...++.....+-++..+...+.. |.. ++.... ...++...+.+..++.+.++.+-....
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s--r~~---lf~~~a----~~~k~~~~~~fl~ll~r~d~~iv~~~~ 135 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS--RVD---LFHDYA----HKLKRTEWLSFLNLLNRQDTFIVEMSF 135 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch--HHH---HHHHHH----HhhhccchHHHHHHHhcCChHHHHHHH
Confidence 44555555555555556666666666655554422 111 111110 012233355566777777787777666
Q ss_pred HhHHHHHHhhcc---chhhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhh
Q 007842 185 SNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGK 231 (587)
Q Consensus 185 ~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~ 231 (587)
..+..++..... ..........+...++. .+...+..++.+|..+..
T Consensus 136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~ 186 (442)
T KOG2759|consen 136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR 186 (442)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence 666666554321 11334445555555544 455566667777777654
No 307
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=82.46 E-value=38 Score=30.67 Aligned_cols=65 Identities=17% Similarity=0.071 Sum_probs=37.3
Q ss_pred HhcCCChHHHHHHHHHHHHHHHhh----Chhhh-------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842 405 LAEDRHWRVRLAIIEYIPLLASQL----GVGFF-------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (587)
Q Consensus 405 ~~~~~~~~vR~~~~~~l~~l~~~~----~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 469 (587)
+++|+++.+...++.+...+.... ..... ...+...++..+.+.++.||.++++++..++.....
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~ 76 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSP 76 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 356777888888877777776653 11000 122344455556666666777777777766665544
No 308
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=82.40 E-value=65 Score=33.37 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=56.6
Q ss_pred hChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 467 FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 467 ~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
.|.+.-.+-.+..+-.++.-.++.+|.+.--+++-+...-+. -.++..+.+...|.+.+|-.+++.+++-+....
T Consensus 632 Mgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiGAGT 706 (878)
T KOG2005|consen 632 MGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGT 706 (878)
T ss_pred hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhccccCCc
Confidence 444433344455566667777889999999999888764333 468889999999999999999999999886543
No 309
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=81.77 E-value=21 Score=27.86 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=22.7
Q ss_pred hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (587)
Q Consensus 475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~ 510 (587)
.++..+.+-+++++|.+..-|+..+..+.+.+|..+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 344555555566677777777777777777666543
No 310
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=81.30 E-value=14 Score=28.99 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=43.7
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH-----HhhHHHHHHHhcC--------CCCccHHHHHHHHHHH
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRPCLVELTE--------DPDVDVRFFATQAIQS 579 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~~--------d~d~~Vr~~a~~al~~ 579 (587)
..++..|.+-++++++.|+..+++.|..++..-.+... ...++..+.+... +.-..||..|..+++.
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 46677777777777777777777777777766443311 1233444444332 2234689999988887
Q ss_pred HHH
Q 007842 580 IDH 582 (587)
Q Consensus 580 l~~ 582 (587)
|-.
T Consensus 117 if~ 119 (122)
T cd03572 117 IFS 119 (122)
T ss_pred Hhc
Confidence 643
No 311
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.16 E-value=23 Score=27.25 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=41.5
Q ss_pred CChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh
Q 007842 175 DMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238 (587)
Q Consensus 175 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (587)
.+..-|+.+..+++.+.+..++ ....+.+...+...+.. ++.|..+++++..+...++++..
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHH
Confidence 5667788889999998884432 12334444444444333 37888899999998888877543
No 312
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=80.94 E-value=25 Score=27.67 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=37.1
Q ss_pred HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChh-hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842 395 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (587)
Q Consensus 395 ~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
...++|.+...++ ....+.|.+++..++.++....-+ ...+.++..+......... ...++.++..+++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3556777777666 666777777777777776654311 1112222222222222222 355666666666544
No 313
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=79.86 E-value=8.5 Score=38.22 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=75.5
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhc---ccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 548 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-- 548 (587)
..+...+.+.+.+|+..+.-.+...+.++.- .+|..+....++..+.+++..++...|.+..+.+.-+.-..+..
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 4566677788888877777666666666643 34555667889999999999889999998888888665444333
Q ss_pred -HHHhh-HHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842 549 -MVEKT-IRPCLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 549 -~~~~~-i~~~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
.+... =...+..+.+|+++.|+....+.|..+
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNf 543 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNF 543 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhc
Confidence 11122 234556678999999988887777654
No 314
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=79.28 E-value=90 Score=33.01 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=55.9
Q ss_pred hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 007842 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
...++..+..+..|+-..||..++.++..+...-++ ....++-.+++-++|++..+-..|...|..+....+
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 445677788888999999999999998877654332 345688999999999998888888888877766544
No 315
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=79.16 E-value=1.4 Score=23.77 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhh
Q 007842 491 YRMTILRAISLLA 503 (587)
Q Consensus 491 ~R~~a~~~l~~l~ 503 (587)
+|..++++|+.+.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 3455555555554
No 316
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=78.97 E-value=15 Score=29.94 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=47.0
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHh
Q 007842 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (587)
+.+-..+..++.+.+.+|++.|++++...-. . ....--..+..+++|. ..|.........-....=.+...+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~-~l~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----P-YLTPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H-HHHhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCHHHHhH
Confidence 4577788889999999999999999877643 1 1122235566677665 3455544432111110001233455
Q ss_pred HHHHHHHhh
Q 007842 359 LLPIFLSLL 367 (587)
Q Consensus 359 l~~~l~~~l 367 (587)
++|+++.++
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 666666554
No 317
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=78.58 E-value=47 Score=29.32 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCC-chhHHH-HHHHHHHHHhhhcChhhhhhc
Q 007842 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRL-LAVEGCAALGKLLEPQDCVAH 241 (587)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~-~a~~~l~~l~~~~~~~~~~~~ 241 (587)
...++..+.+++..+.|..++..+.......... -++.+..++.+- ++.+-. .+..+++.+.. ..+.
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~------~~~~ 115 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLA------DYPE 115 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHh------CChh
Confidence 3444445555555566666666555543332211 133333333322 233322 22222232221 1223
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007842 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
..+.+.....+++.-.|+.|+-+.-.+.. ......+...+..++.|++.-|+++..-+|..++..
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKE----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 35566666666666666666544322222 122344566666677777777777777777777664
No 318
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.41 E-value=1.4e+02 Score=34.66 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHH--HHhhHHHHHHHhcCCCCccHH
Q 007842 493 MTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDVDVR 570 (587)
Q Consensus 493 ~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~d~~Vr 570 (587)
...+-+++..+...+.+ ++.....++....|...+.|..++..+..+....|+.. ..++.+|.|.++.+|.+..|.
T Consensus 1522 ~~li~~i~~~~~a~~~d--~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve 1599 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDD--LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVE 1599 (1621)
T ss_pred HHHHHHHHhhccCChhh--hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHH
Confidence 34444454444444433 23344445555667799999999999999999998874 568999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 007842 571 FFATQAIQSIDHVMMS 586 (587)
Q Consensus 571 ~~a~~al~~l~~~~~~ 586 (587)
..+.+...++.+.+|-
T Consensus 1600 ~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1600 CLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHHHHHHhch
Confidence 9999999998888874
No 319
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=78.40 E-value=41 Score=32.94 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=88.4
Q ss_pred HHHHHHhcCCCc--hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCC-chhHHHHHHHHHHHhhcccCh---HHH
Q 007842 438 GALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS---EIT 511 (587)
Q Consensus 438 ~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~---~~~ 511 (587)
+..++.++..++ ..||..+...|..+......+.....-+..++.+.+.. ........+..++++.++... ..+
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344555555544 46799999999888765554443332234444433222 234445566677777664332 112
Q ss_pred HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
....+..++..++..+|.+=..++-+|+++..+-+.. .+...+.+-|--+....|.-.|.+|+-|...+..
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 3334555666677777888888889999987664433 3334444455556677788889999998877754
No 320
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.29 E-value=3.5 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 515 LLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 515 il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
.+|.+.++++++++.++..++.+|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555555555556666666666666553
No 321
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=77.47 E-value=24 Score=25.82 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=42.3
Q ss_pred hhHHHHHHhh-cCCCChhHHHHHHHHHHHhhhhhchHHHH--hhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007842 513 SRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQS 579 (587)
Q Consensus 513 ~~il~~l~~~-l~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~i~~~l~~l~~d~d~~Vr~~a~~al~~ 579 (587)
..++.++... .+.++..||...+.++..+....+..... ..++..+.....|.+.++-..|-+.++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4455445554 34557788888888888887765543211 3466666666777777777777666553
No 322
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=76.53 E-value=37 Score=27.14 Aligned_cols=136 Identities=12% Similarity=0.046 Sum_probs=80.6
Q ss_pred CCCchHHHHHHHHHHHHHHHH-hChHHH-hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH-HH-HhhHHHHHHh
Q 007842 446 QDKVYSIRDAAANNLKRLAEE-FGPEWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-IT-CSRLLPVVIN 521 (587)
Q Consensus 446 ~d~~~~vr~~a~~~l~~l~~~-~~~~~~-~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~-~~-~~~il~~l~~ 521 (587)
...+.+-++.....|++++-. +..+.. .-..+..+.+.+..+|....+-++..+.+++..-... ++ ...=+|.++.
T Consensus 27 ~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~ 106 (173)
T KOG4646|consen 27 TTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIF 106 (173)
T ss_pred HhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEe
Confidence 344555566655555555421 111111 2345667777788888888888888887776422221 11 1223567777
Q ss_pred hcCCCChhHHHHHHHHHHHhhhhhc---hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 522 ASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 522 ~l~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.++++..++-..++-++..+...-. ++.....++..+.+.......+-|..|...+++.+
T Consensus 107 ~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 107 VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 8888888877777777776654321 12333456666666655666677777777777654
No 323
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=76.30 E-value=33 Score=26.36 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChhh
Q 007842 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~~~ 432 (587)
.-|..++.+++.+.+..|.. .....|.+..++.. ..+..|..+++++..+.+.+..+.
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~--i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKH--ISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHH
Confidence 44677777777777754432 13334433333221 234466666666666666665433
No 324
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=76.11 E-value=3.2 Score=24.81 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=25.0
Q ss_pred hHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 553 TIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 553 ~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
..+|.|.+++.+.+++++..+..+|..+.
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46788888888889999999999998875
No 325
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=75.85 E-value=85 Score=30.92 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=83.7
Q ss_pred HHhhhhcchh--hHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHHH----
Q 007842 90 PLETLCTVEE--TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKT---- 162 (587)
Q Consensus 90 ~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~---- 162 (587)
.|..++..++ ..||..+.+.|.++...-..+.+...-+-.|..+.+.. .........++++++++|..+-+..
T Consensus 184 ~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa 263 (832)
T KOG3678|consen 184 LLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAA 263 (832)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Confidence 3344444443 46799999999987655444444444445555555432 3334445778888888887543222
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc----hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhh
Q 007842 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (587)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (587)
..+..+.-.+.-.+|.+-+.++-+|++.+-+-+.+ .+...+-..+.-+....++-.|..|+-+...++.
T Consensus 264 ~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 264 GGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred cccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 22333444455566888788888888887665432 1223333444455555666778877777666654
No 326
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=75.10 E-value=72 Score=29.73 Aligned_cols=137 Identities=15% Similarity=0.246 Sum_probs=91.0
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhC---hHHHh---hhhHHH-HHhhccCCchhHHHHHHHHHHHhhcccChHH-HH
Q 007842 441 CMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAM---QHITPQ-VLEMINNPHYLYRMTILRAISLLAPVMGSEI-TC 512 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~---~~l~~~-l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~-~~ 512 (587)
+..+.+-+...+-.-|..++..+...-. .+++. +.+++. -..++.+.|+-+|.-+...+|.+...-.... +.
T Consensus 171 FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~ 250 (342)
T KOG1566|consen 171 FFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMT 250 (342)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHH
Confidence 4445566666776777777766665321 12222 233444 4557888999999999999999875333221 11
Q ss_pred -----hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--------HHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007842 513 -----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------MVEKTIRPCLVELTEDPDVDVRFFATQAI 577 (587)
Q Consensus 513 -----~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------~~~~~i~~~l~~l~~d~d~~Vr~~a~~al 577 (587)
+.-+..+..+++|++.+++..+.........+.... .-.+.++..+..+..|..+|.++...+++
T Consensus 251 kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~ 328 (342)
T KOG1566|consen 251 KYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAY 328 (342)
T ss_pred HHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHH
Confidence 244567888899999999999998888776554322 11245677777788888888887776653
No 327
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=75.08 E-value=14 Score=25.93 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcc-cChHHHH-hhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhh
Q 007842 492 RMTILRAISLLAPV-MGSEITC-SRLLPVVINASK-DRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 492 R~~a~~~l~~l~~~-~~~~~~~-~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~ 544 (587)
..+++.++++++.. .|..... ..+++.+.++.. ++...+|-.+..+|+.++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 45677777777653 3333332 346666666543 56777888887777777665
No 328
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=74.59 E-value=31 Score=30.03 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=10.6
Q ss_pred HHhcCCCchHHHHHHHHHHHHHH
Q 007842 442 MQWLQDKVYSIRDAAANNLKRLA 464 (587)
Q Consensus 442 ~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
++...++-..||..|..++..+.
T Consensus 13 lrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 13 LRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444445555555554444
No 329
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=74.01 E-value=70 Score=29.06 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=63.5
Q ss_pred HHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc-ccChH-
Q 007842 437 LGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSE- 509 (587)
Q Consensus 437 l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~-~~~~~- 509 (587)
+.|++...-++ +...+|.+++.++|.+++.-..+. ...+++|.+...++.++.--|..|...+.++.. ..|-.
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~y 175 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNY 175 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHH
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHH
Confidence 45555433322 346688889888888887554442 236788988888888888888888888888753 22221
Q ss_pred ------HH--HhhHH-HHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 510 ------IT--CSRLL-PVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 510 ------~~--~~~il-~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
.+ ...++ ..+..+.+++++.+=..++++...++..-
T Consensus 176 iC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 176 ICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 11 12222 23333456667766677777777776653
No 330
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=73.51 E-value=72 Score=28.97 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=69.7
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHH----HHHHHHhHHHHHhhhCHHHHHHhHhHHHHH
Q 007842 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV----RIAAAGKVTKFCRILNPELAIQHILPCVKE 326 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~v----r~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 326 (587)
.++++..-..++..|+.+-. ..-+|.+++++.-++..+ --.....++.+...++.. =...+.+
T Consensus 52 ~~~~~~~~~~a~~LLaq~re--------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G-----~~~~L~~ 118 (249)
T PF06685_consen 52 DDEEYNLHFYALYLLAQFRE--------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDG-----DIEPLKE 118 (249)
T ss_pred cCcchHHHHHHHHHHHHHhh--------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCC-----CHHHHHH
Confidence 33445444455555555532 345666666664322111 111222233332222221 1345566
Q ss_pred hccCC--cHHHHHHHHHHHHcccccc--chhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHH
Q 007842 327 LSSDS--SQHVRSALASVIMGMAPLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (587)
Q Consensus 327 ~~~d~--~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l 402 (587)
++.++ +..+|.+++.++..++..- ..+...+.+...+...++.....+-...+..+..+.. ..++|.+
T Consensus 119 li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~--------~EL~~~I 190 (249)
T PF06685_consen 119 LIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYP--------EELLPEI 190 (249)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCH--------HHhHHHH
Confidence 67766 4689999999998876543 3455566666666665665544443333433333322 3556666
Q ss_pred HHHhc
Q 007842 403 VELAE 407 (587)
Q Consensus 403 ~~~~~ 407 (587)
.+...
T Consensus 191 ~~~f~ 195 (249)
T PF06685_consen 191 RKAFE 195 (249)
T ss_pred HHHHH
Confidence 66544
No 331
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=73.35 E-value=30 Score=33.00 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=49.7
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (587)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~ 482 (587)
..++|.+-..++..++.- + ......+..+.+.++..++.|...|+..++.+...+|..+. ...+...+..
T Consensus 22 T~enW~~IlDvCD~v~~~-----~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~a 95 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSD-----P-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRA 95 (462)
T ss_pred ccccHHHHHHHHHhhcCC-----C-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHH
Confidence 445776644443333221 1 12344666777778888888888888888888877776543 2345555555
Q ss_pred hccC-CchhHHHHHHHHH
Q 007842 483 MINN-PHYLYRMTILRAI 499 (587)
Q Consensus 483 ~l~d-~~~~~R~~a~~~l 499 (587)
++++ ...+|+...-..+
T Consensus 96 l~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 96 LIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHhhcccHHHHHHHHHHH
Confidence 5553 2344444443333
No 332
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=73.10 E-value=33 Score=25.10 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=43.4
Q ss_pred HHHHHHHHHHh-cCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHH
Q 007842 161 KTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 227 (587)
Q Consensus 161 ~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~ 227 (587)
.+.++..+..+ .+.++.+||....+++..+....+.. .-++.++.++....+|++..+-..|.+++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34444445444 55678889999999988888765432 235667777777777766666555655543
No 333
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.86 E-value=48 Score=26.69 Aligned_cols=73 Identities=10% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhCCch--hHHHHHHHHHHHHhhhc
Q 007842 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLL 233 (587)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~ 233 (587)
-+..+..+..-+.++++.+...++..+..+++..|... ....++..+..++++... .||...+..+..-+..+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34455556666667778888888888887777765422 122234444444444322 25555555554444443
No 334
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.83 E-value=1.1e+02 Score=30.40 Aligned_cols=357 Identities=13% Similarity=0.134 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCCh
Q 007842 218 VRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNE 293 (587)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~ 293 (587)
.-+.|+..|-.+++...-+ .....++..+.+.++-++...-...+..+-++.-...+. .....++.-+.+++.-..
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 3445667777777766542 345668888888887777666666666655554322221 123457888888888889
Q ss_pred HHHHHHHHHhHHHHHhhhC--HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccc--cccchhHHHHhHHHHHHHh-hc
Q 007842 294 AEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGKDATIEQLLPIFLSL-LK 368 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~~~~~~~~l~~~l~~~-l~ 368 (587)
++.|.+.+..+-.+.-.-| +.-+...++|.+..++.+... ...|...+-.+. ..+..-......+|.+.+. +.
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888877654333 222334567888888765432 111111111111 0000001122233333322 22
Q ss_pred CCChHHHHHHHHhhhhhhhhhchhhHH--hhHHHHHH-HHhcCCChHHHHHHHHHHHHHHHhhCh--hhhHHHHHHHHHH
Q 007842 369 DEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ 443 (587)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~l~~l~-~~~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ 443 (587)
..+.+|-...+..--.++-.-...++. ..-+..+. ..++..+. ..++.+..++++-|+ ..|.+++-.+.-.
T Consensus 437 ~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~FidyvgdLa~i 512 (791)
T KOG1222|consen 437 GTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFIDYVGDLAGI 512 (791)
T ss_pred cCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 222333222221100111000000000 00011111 11122221 123334444444332 1233333332222
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhC--hHH--H--hhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHHH--Hh
Q 007842 444 WLQDKVYSIRDAAANNLKRLAEEFG--PEW--A--MQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEIT--CS 513 (587)
Q Consensus 444 ~l~d~~~~vr~~a~~~l~~l~~~~~--~~~--~--~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~~--~~ 513 (587)
.-.|++.+ -.++++|.+...-- .+| . ...++|.+.+.+.-. ........+-++|.++....-... ..
T Consensus 513 ~~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a 589 (791)
T KOG1222|consen 513 AKNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA 589 (791)
T ss_pred hhcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence 23344444 44555555554211 122 1 256788887765532 122334444555665543222221 24
Q ss_pred hHHHHHHhhcCC--CChhHHHHHHHHHHHhhhhhch-H-HHHh-hHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 514 RLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ-S-MVEK-TIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 514 ~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~-~-~~~~-~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
.+++.++.+++. .+.+.-...+..+.++..+-.. + ...+ ..-..+..+..|....||...-.+|..++.+
T Consensus 590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 477777777653 2445555566666666554211 1 2222 3445667789999999999999999988765
No 335
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=71.83 E-value=84 Score=29.03 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=67.7
Q ss_pred ccCCchhHHHHHHHHHHHhhcc-cChHHHH---h-hHHHHHHhhcCCC---ChhHHHHHHHHHHHhhhhhch----HHHH
Q 007842 484 INNPHYLYRMTILRAISLLAPV-MGSEITC---S-RLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQ----SMVE 551 (587)
Q Consensus 484 l~d~~~~~R~~a~~~l~~l~~~-~~~~~~~---~-~il~~l~~~l~d~---~~~vR~~~~~~l~~l~~~~~~----~~~~ 551 (587)
..+.....+..+++++.++... .|...+. . .++..+....... +.++|.+++..+.+++-.... ....
T Consensus 119 ~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~ 198 (268)
T PF08324_consen 119 SSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ 198 (268)
T ss_dssp TTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH
T ss_pred cCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 3346788999999999998764 3443332 2 4555555555554 899999999999888654322 2344
Q ss_pred hhHHHHHHH-hcC-CCCccHHHHHHHHHHHHH
Q 007842 552 KTIRPCLVE-LTE-DPDVDVRFFATQAIQSID 581 (587)
Q Consensus 552 ~~i~~~l~~-l~~-d~d~~Vr~~a~~al~~l~ 581 (587)
..++..+.+ +.. ..|+++.+++.-|+|++.
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 456666666 333 368999999999999987
No 336
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=71.25 E-value=1.8e+02 Score=32.54 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCc--HHHHHHHHHHHHccccc
Q 007842 290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPL 349 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~ 349 (587)
.|.+..-+..|+..+..+-...+ ...|...+.|+. +++|.+|+.+|...+..
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s--------~~~L~rtl~der~FyrIR~~Aa~aLak~a~~ 706 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTAS--------RSALTRTLEDERYFYRIRIAAAFALAKTANG 706 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchh--------HHHHHHHHhhcchhhHHHHHHHHHHHHhhcc
Confidence 56666666666666655433211 134555555654 79999999999887654
No 337
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=71.10 E-value=86 Score=28.83 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842 398 LLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (587)
Q Consensus 398 ~l~~l~~~~~~~~-----~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 472 (587)
.+|.+..-+.+++ ..++ .+++.+..+++.-+.......+..+...-..+.+..++ .+...+...+.+++
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~----~v~~~l~~~f~P~~- 185 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLS----QVVSYLREAFFPDH- 185 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHHhCchh-
Confidence 4566666555555 3333 44566777766544433333222222222333333333 23344444444432
Q ss_pred hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH-HHhhHHHHHHhhcCCCChh
Q 007842 473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI-TCSRLLPVVINASKDRVPN 529 (587)
Q Consensus 473 ~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~-~~~~il~~l~~~l~d~~~~ 529 (587)
.-.++-.+..++.++-..+|...+..+..+.+..+... ....++..+.++++.+...
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM 243 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH
Confidence 23456667788888878889999999988887554321 3345666777777655443
No 338
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=70.17 E-value=52 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
..+...+..-|++.++-|+..++..|..++..-+.+
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 457888888899999999999999999988764433
No 339
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=70.06 E-value=63 Score=26.88 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHH--hChHHHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhc
Q 007842 451 SIRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINAS 523 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l 523 (587)
+.-..++.++..+... .+.+.+...++..+....+.+ +..+-+.|+..+..+...... ....+--++.++..+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 4445566666666663 233444566666666665543 567888888888888764322 111234567888888
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchH
Q 007842 524 KDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 524 ~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
+++++.++.+++..+-.+..+.+++
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCChH
Confidence 8999999999999888887776554
No 340
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=69.07 E-value=80 Score=30.35 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=54.7
Q ss_pred hhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh----hhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC
Q 007842 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP 274 (587)
Q Consensus 200 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~ 274 (587)
-...+..+.+-++..++.|...|+..+.++...|+.. .....+...+..++. ..+++|+......+-+.+..+.+
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 3456667777778888999999999999999888863 223345555666666 55778888777777777776655
Q ss_pred Cc
Q 007842 275 EP 276 (587)
Q Consensus 275 ~~ 276 (587)
+.
T Consensus 123 Dp 124 (462)
T KOG2199|consen 123 DP 124 (462)
T ss_pred Cc
Confidence 43
No 341
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=68.12 E-value=46 Score=27.14 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCC
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD 214 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~ 214 (587)
...++...+..++.+++++|++.|.+++...-. +...+ .-+.+..+++|.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l~p-Y~d~L~~Lldd~ 63 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYLTP-YKDNLENLLDDK 63 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHh-HHHHHHHHcCcc
Confidence 346778888899999999999999999887533 12222 234555555554
No 342
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=67.71 E-value=37 Score=29.19 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=39.2
Q ss_pred CchhHHHHHHHHHHHhhcc-cChHHH--HhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 487 PHYLYRMTILRAISLLAPV-MGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 487 ~~~~~R~~a~~~l~~l~~~-~~~~~~--~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
.+......++.|+..+... .|.+.+ .+..+..+...+..+++.+|..+++.|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4556777788888887752 333332 3567788888888889999999998888765
No 343
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.76 E-value=77 Score=31.82 Aligned_cols=73 Identities=7% Similarity=0.119 Sum_probs=50.2
Q ss_pred hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhch
Q 007842 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~ 547 (587)
..+-.+.+.+++.+..+..-|+..|..+++.+|..+. .+.+++.+++..+.. +..||..++..|..+...++.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 3445555566666667777777777777777776543 456777777666544 667888888888888777665
No 344
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=66.61 E-value=2.2e+02 Score=31.84 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=57.8
Q ss_pred HHHHHhccCCc--HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh---------HH-----HHHHHHHhHHHH
Q 007842 244 PVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE---------AE-----VRIAAAGKVTKF 307 (587)
Q Consensus 244 ~~l~~~~~d~~--~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~---------~~-----vr~~a~~~l~~l 307 (587)
..|.+.+.|+. +++|..|+.+|+..+.....-...+.++..+.+...+.+ .. |+.+.-.++..+
T Consensus 677 ~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~l 756 (1180)
T KOG1932|consen 677 SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPVAFASL 756 (1180)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHHHHHHh
Confidence 55666666654 789999999999988654333345567777776553221 11 333333333333
Q ss_pred HhhhCHHHHHHhHhHHHHHhcc--C------CcHHHHHHHHHHHHccc
Q 007842 308 CRILNPELAIQHILPCVKELSS--D------SSQHVRSALASVIMGMA 347 (587)
Q Consensus 308 ~~~~~~~~~~~~i~~~l~~~~~--d------~~~~vr~~a~~~l~~l~ 347 (587)
-..-|. .-+.+.++|..+++ | ++..-|.+.+++++...
T Consensus 757 R~~~g~--cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l 802 (1180)
T KOG1932|consen 757 RGREGK--CPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESL 802 (1180)
T ss_pred ccccCC--ChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhc
Confidence 222121 12445666766664 2 23567888888776544
No 345
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=65.44 E-value=1e+02 Score=27.65 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=55.7
Q ss_pred CchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc-ccChHH-------H--Hh
Q 007842 448 KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSEI-------T--CS 513 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~-~~~~~~-------~--~~ 513 (587)
+....|..++.+++.+++.-..+. ...+++|.++..+..++..-+..|...++.+.- ..|-.+ | ..
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~ 216 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA 216 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH
Confidence 445577777777777776543332 235677777777777777777777777777642 333211 1 12
Q ss_pred hHH-HHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 514 RLL-PVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 514 ~il-~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
.++ ..+..+.+.+++..=..++++..++..+
T Consensus 217 ~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 217 LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 222 2334445556666666666666666544
No 346
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.36 E-value=77 Score=31.83 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred HhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHH
Q 007842 405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQV 480 (587)
Q Consensus 405 ~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l 480 (587)
.+.+++|.+-..++..|.. .-+. ....+-.+.+.+.+.+..|...|+..|..+++.+|..|. .+.+++.+
T Consensus 13 ~l~~pDWa~NleIcD~IN~---~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINS---TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhc---CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4567889876665554422 1111 124566777888888889999999999999999998763 36778877
Q ss_pred HhhccCC--chhHHHHHHHHHHHhhcccCh
Q 007842 481 LEMINNP--HYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 481 ~~~l~d~--~~~~R~~a~~~l~~l~~~~~~ 508 (587)
+...+.. +..||..++..|..-.+.++.
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 7766544 678999999999888776655
No 347
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.33 E-value=2.1e+02 Score=33.37 Aligned_cols=211 Identities=13% Similarity=0.147 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHH------hhHHHHHH
Q 007842 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV------DWYIPLVK 131 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~------~~l~~~l~ 131 (587)
..+.++|..+.+|...-++ .-+..++.++..-..+++..+-+.+...+..+........+. ...++-+.
T Consensus 1048 s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~ 1122 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLE 1122 (1514)
T ss_pred cCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHH
Confidence 3456888888888864333 124567777777777777777777777777655544332222 22233333
Q ss_pred HHhcCC-CCcchhhHHhhhH----hhcCC-----CC-------hHHHHHHHHHHHH---hcCCCChHHHHHHHHhHHHHH
Q 007842 132 RLAAGE-WFTARVSACGLFH----IAYPS-----AP-------DILKTELRSIYTQ---LCQDDMPMVRRSAASNLGKFA 191 (587)
Q Consensus 132 ~l~~~~-~~~~r~~a~~~l~----~~~~~-----~~-------~~~~~~l~~~l~~---l~~d~~~~vr~~~~~~l~~l~ 191 (587)
+++.+. ....-..++..+. .+.+. .. .......+|++.. .+.+....||..+.+.+..+.
T Consensus 1123 ~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il 1202 (1514)
T KOG0929|consen 1123 EFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDIL 1202 (1514)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHH
Confidence 333322 1111111111111 11111 11 1122334444433 344778999999999999988
Q ss_pred Hhhccc---hhhh----HHHHHHHHhhhCCchh-----HHHHHHHHHHHHhhhcCh-----hhhhhchHHHHHHhccCCc
Q 007842 192 ATVEPA---HLKT----DIMSIFEDLTQDDQDS-----VRLLAVEGCAALGKLLEP-----QDCVAHILPVIVNFSQDKS 254 (587)
Q Consensus 192 ~~~~~~---~~~~----~l~~~l~~l~~d~~~~-----vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d~~ 254 (587)
...++. .++. .++|++..+-.+.+.. ....+..++..+.+.+.. ....+.++..+..+...++
T Consensus 1203 ~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n 1282 (1514)
T KOG0929|consen 1203 KEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDN 1282 (1514)
T ss_pred HhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 887652 2222 3344444443333222 222333444444433322 1233444445555555556
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 007842 255 WRVRYMVANQLYELCEAVG 273 (587)
Q Consensus 255 ~~vR~~a~~~l~~~~~~~~ 273 (587)
..+-+....++..+....|
T Consensus 1283 ~~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1283 QQLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred hhhHHhHHHHHHHHHHhcc
Confidence 5665666666666655444
No 348
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=64.95 E-value=2.6e+02 Score=32.01 Aligned_cols=139 Identities=19% Similarity=0.274 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhh-------h-----CCchhHHHHHHHHHH
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-------Q-----DDQDSVRLLAVEGCA 227 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~-------~-----d~~~~vr~~a~~~l~ 227 (587)
.-+.++.++..++...+..+|.++..+||.+-..+. +.....+-+.+.... . ...+.+|.....++.
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~-~~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ 271 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSINLNVY-RTLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLR 271 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 456788888889999999999999988888654432 122222222222211 0 012457777888888
Q ss_pred HHhhhcChhh------hhhchHHHHHH----hc---cCCcH---HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 007842 228 ALGKLLEPQD------CVAHILPVIVN----FS---QDKSW---RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (587)
Q Consensus 228 ~l~~~~~~~~------~~~~l~~~l~~----~~---~d~~~---~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d 291 (587)
.+++.+.+.. ....++.++.. +. .+.+| .+|...+..+..+...+... -.+.+
T Consensus 272 llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~---------~se~f-- 340 (1120)
T PF14228_consen 272 LLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKA---------KSEWF-- 340 (1120)
T ss_pred HHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhc---------hhhcC--
Confidence 8887776521 11122233222 11 12345 35555555554444332110 01111
Q ss_pred ChHHHHHHHHHhHHHHHhhh
Q 007842 292 NEAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~ 311 (587)
..+.|+.+...+...+...
T Consensus 341 -pfe~RkslF~l~~eWCGy~ 359 (1120)
T PF14228_consen 341 -PFEARKSLFNLFEEWCGYS 359 (1120)
T ss_pred -CHHHHHHHHHHHHHHhhhh
Confidence 2467888888888877654
No 349
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=64.87 E-value=62 Score=24.86 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCC----hHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh
Q 007842 164 LRSIYTQLCQDDM----PMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (587)
Q Consensus 164 l~~~l~~l~~d~~----~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
++..+.+.++|.+ ..-|+.+..+++.+.+..++. ...+.+...+...+. .++.|..+++++..+...+.++.
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 3444444455543 345888889999988865431 233444444444443 45689999999999888887653
No 350
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.23 E-value=1.8e+02 Score=29.29 Aligned_cols=134 Identities=15% Similarity=0.053 Sum_probs=78.5
Q ss_pred hhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh----hhH
Q 007842 48 ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDL 122 (587)
Q Consensus 48 ~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~ 122 (587)
++..+|.. +.--.++.|..++.+|--+-.. +.-....|+.++..+..-.+...|+-+..-+....+.+.. +..
T Consensus 20 el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk--~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~kl 97 (616)
T KOG2229|consen 20 ELKDLLRTNHTVLPPELREKIVKALILLRNK--NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDKL 97 (616)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhcc--CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccchH
Confidence 44555544 3345678888888887544321 1123446777777777888888899888888777765543 233
Q ss_pred HhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 007842 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184 (587)
Q Consensus 123 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~ 184 (587)
...+-.++.++..+.+...-..|..++..++.+.-=. ...-+.++...|-+.+|.|..+++
T Consensus 98 nkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~-d~~tV~i~~~acf~~~~ki~vs~l 158 (616)
T KOG2229|consen 98 NKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN-DSKTVNIITTACFSKVPKILVSGL 158 (616)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc-cchhHHHHHHHHhccCcHHHHhhh
Confidence 4455566777777776655555666666665532100 122233333335556677665543
No 351
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.26 E-value=2.7e+02 Score=30.67 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 511 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
+...|+.....++++++-.+|..++..+....+.+... +.....+|.+.+...+.|+-+-..|.+++.+++++-|
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 35667778888999999999999999998766544321 2345678888888899999999999999999999877
Q ss_pred c
Q 007842 586 S 586 (587)
Q Consensus 586 ~ 586 (587)
+
T Consensus 880 D 880 (1014)
T KOG4524|consen 880 D 880 (1014)
T ss_pred h
Confidence 5
No 352
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=60.09 E-value=2.2e+02 Score=30.48 Aligned_cols=148 Identities=19% Similarity=0.128 Sum_probs=88.8
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhc-cCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (587)
+..|+..+.|.|..+..++-..+.......-. ..++..|.+. +...+. .+.+.|-.+ . ..+-..++.
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~y~~~t~s~---~~~~il~~~----~-~P~~K~~~~ 73 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDRE----PWLVNGLVDYYLSTNSQ---RALEILVGV----Q-EPHDKHLFD 73 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccch----HHHHHHHHHHHhhcCcH---HHHHHHHhc----C-CccHHHHHH
Confidence 67899999999988877776666544322111 1444555442 222221 122222222 2 234456777
Q ss_pred HHhhhhcchhhHHHHHHHHHHHHHHhhcChh---hHHhh-HHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---HHHH
Q 007842 90 PLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDW-YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKT 162 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~-l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~ 162 (587)
.|...+. ++.-|..++.-|+.+...-++. ..... +..++..+..|.+..+-..|+..+..+.++++. .+..
T Consensus 74 ~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~ 151 (668)
T PF04388_consen 74 KLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP 151 (668)
T ss_pred HHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 7766665 4567899999999887754431 11222 333445555566777777788888888888763 3777
Q ss_pred HHHHHHHHhc
Q 007842 163 ELRSIYTQLC 172 (587)
Q Consensus 163 ~l~~~l~~l~ 172 (587)
.++.++..++
T Consensus 152 ~Lf~If~Rl~ 161 (668)
T PF04388_consen 152 DLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHH
Confidence 7888877775
No 353
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=57.35 E-value=43 Score=23.55 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhh-hchHHHH-hhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHhh
Q 007842 531 KFNVAKVLQSLIPI-VDQSMVE-KTIRPCLVELT-EDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 531 R~~~~~~l~~l~~~-~~~~~~~-~~i~~~l~~l~-~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
...++.+++.+... .|.+... ..+++.+.++. +++...||-.+..+|+-+++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 46788999999865 3444343 36888888864 5788999999999999988754
No 354
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=55.90 E-value=2.8e+02 Score=29.61 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=48.4
Q ss_pred HhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh
Q 007842 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (587)
..++..|..+..|+-..|+..++..+..+...-+.+ -..++-.+++-+.|.+..+-..|...|..+....
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~H 372 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKH 372 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhC
Confidence 456677777888888888888887776655433332 2456677777888887777777777777665543
No 355
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=55.77 E-value=85 Score=26.94 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHHHHHH-HhChHHH--hhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 447 DKVYSIRDAAANNLKRLAE-EFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~-~~~~~~~--~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
+.+......++.++..++. ..|-+.+ .+..++.+...+.+++..+|..+++.|..++
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3555667777777777665 2333322 2566778888888889999999999888764
No 356
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=55.61 E-value=1.3e+02 Score=25.43 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---H
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---T 511 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~ 511 (587)
+.|+++.+|+... ++....+.|+.+++....+.+ .+.-.+.+.+.+......--..|...+..+.-....++ +
T Consensus 4 ikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 4 IKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred hHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHH
Confidence 4455666554332 234444555555543332221 12223333332211111111446666666652223332 3
Q ss_pred HhhHHHHHHhhcCCCC
Q 007842 512 CSRLLPVVINASKDRV 527 (587)
Q Consensus 512 ~~~il~~l~~~l~d~~ 527 (587)
.+.++|.+.+.+.+|.
T Consensus 82 ~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 82 MENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHHHHcCCch
Confidence 5667888888888873
No 357
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=55.34 E-value=1.1e+02 Score=24.86 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=41.9
Q ss_pred CCchhHHHHHHHHHHHHhhhcChhhh----hhchHHH-HHHhccC---CcHHHHHHHHHHHHHHHHHhCCCc
Q 007842 213 DDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPV-IVNFSQD---KSWRVRYMVANQLYELCEAVGPEP 276 (587)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~-l~~~~~d---~~~~vR~~a~~~l~~~~~~~~~~~ 276 (587)
..++.|...|+..+..+...++.... ...++.- +.+++++ .+..||..+...+......++.+.
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSP 121 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 45677777788888888888876322 2334433 5555542 345788888888888888776543
No 358
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=2.5e+02 Score=28.60 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHH
Q 007842 460 LKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 460 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~ 539 (587)
|+.-.-..|.+.-.+-.+.++..++.-.++.+|...--+++-+...-+. -.++..+.+...|.+-+|-.+++.+++
T Consensus 626 Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ----m~vfDtL~r~shd~dl~v~~ntIfamG 701 (881)
T COG5110 626 LGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ----MNVFDTLERSSHDGDLNVIINTIFAMG 701 (881)
T ss_pred hhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc----hHHHHHHHHhccccchhHHHHHHHHhh
Confidence 3333334565544444555565666667888999988888887764333 357888999999999999999999998
Q ss_pred Hhhhh
Q 007842 540 SLIPI 544 (587)
Q Consensus 540 ~l~~~ 544 (587)
.+...
T Consensus 702 LiGAG 706 (881)
T COG5110 702 LIGAG 706 (881)
T ss_pred ccccC
Confidence 87654
No 359
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=53.37 E-value=1.6e+02 Score=27.62 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=50.2
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHH-HHhhChH-hhhhhhhhhh-----hhccCCcHHHHHHHHHHhccccccCCCcc
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTI-ARALGEE-RTRKELIPFL-----SENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~-~~~~~~~-~~~~~l~p~l-----~~~~~~~~~v~~~~~~~l~~l~~~~~~~~ 82 (587)
+-..+++.|.+.+...|..|++.|... ...-+.+ ....+++.+- ..+..|.+-.+..+|..++.++..+++.+
T Consensus 8 ~ev~f~qkLA~ne~~tRdrAlr~Lrkyi~ak~~k~~F~~~dflklWKGLfY~MWmqDkPllQeeLa~~laqLv~~f~~~~ 87 (378)
T KOG3911|consen 8 AEVQFAQKLACNERKTRDRALRKLRKYISAKTQKEGFDQDDFLKLWKGLFYCMWMQDKPLLQEELADTLAQLVHIFTSTE 87 (378)
T ss_pred cchHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHhhchH
Confidence 346789999999999999999999853 2222211 1122333222 23667888899999999999988777644
No 360
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=52.78 E-value=37 Score=23.85 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=30.0
Q ss_pred CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhh
Q 007842 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (587)
Q Consensus 7 ~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~ 40 (587)
+=|.+.+|+...+|.-+.+|..|++.|+.|....
T Consensus 37 aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 37 AGYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999876544
No 361
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=51.83 E-value=2.3e+02 Score=27.25 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=92.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH----H-----HhhhhHHHHHhhcc-CCc---------hhHHHHHHHH
Q 007842 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----W-----AMQHITPQVLEMIN-NPH---------YLYRMTILRA 498 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~-----~~~~l~~~l~~~l~-d~~---------~~~R~~a~~~ 498 (587)
+..+...++.....+...++..|..++..-|.. . +.-..+|.+...-. +.+ ..+|.+++..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 566778888888888889999999988744432 1 12334555554322 111 2899999999
Q ss_pred HHHhhcccChHHH-----HhhHHHHHHhhcCCCChhHHHHHHHHHHH-hhhh--hc----hHHHHhhHHHHHHHhcCCCC
Q 007842 499 ISLLAPVMGSEIT-----CSRLLPVVINASKDRVPNIKFNVAKVLQS-LIPI--VD----QSMVEKTIRPCLVELTEDPD 566 (587)
Q Consensus 499 l~~l~~~~~~~~~-----~~~il~~l~~~l~d~~~~vR~~~~~~l~~-l~~~--~~----~~~~~~~i~~~l~~l~~d~d 566 (587)
+-.+....++... ....+..+.+.+....+.+-..++.++.. +... +. -..+.+.++..+..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 9998876655321 23346777777777677777777777764 3221 11 12455667777777666555
Q ss_pred c----cHHHHHHHHHHHHHH
Q 007842 567 V----DVRFFATQAIQSIDH 582 (587)
Q Consensus 567 ~----~Vr~~a~~al~~l~~ 582 (587)
+ .|+..+-+-|-.+|.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 5 777777777766653
No 362
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=50.94 E-value=1.8e+02 Score=25.76 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=54.2
Q ss_pred HhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHH-----HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc
Q 007842 123 VDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (587)
Q Consensus 123 ~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 196 (587)
--++.|++.....+. ...-|.++.+.++.+.++-+++. ..+++|++....+..+..-+..++..++.+.. +
T Consensus 143 plflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~---d 219 (315)
T COG5209 143 PLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILG---D 219 (315)
T ss_pred ceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---c
Confidence 345677776555443 56678999999999988877763 35788888888887766666665555555433 3
Q ss_pred chhhhHHHHHHH
Q 007842 197 AHLKTDIMSIFE 208 (587)
Q Consensus 197 ~~~~~~l~~~l~ 208 (587)
+.-.+++...+.
T Consensus 220 DvGLqYiCqT~e 231 (315)
T COG5209 220 DVGLQYICQTFE 231 (315)
T ss_pred chhHHHHHHHHH
Confidence 344444444443
No 363
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.68 E-value=50 Score=28.72 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=52.6
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh---chH--
Q 007842 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQS-- 548 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~~-- 548 (587)
.+|.+.+-+.+-+...|..|-..+..+....|.+. +.++++..+...+...+.+|...++++|..+.-.. |..
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLV 194 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALV 194 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhh
Confidence 45555555555555566666666666555545332 34566666777777777888888888887765432 232
Q ss_pred HHHhhHHHHHHHhc
Q 007842 549 MVEKTIRPCLVELT 562 (587)
Q Consensus 549 ~~~~~i~~~l~~l~ 562 (587)
.|..+++|.+....
T Consensus 195 PfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 195 PFYRQLLPVLNTFK 208 (262)
T ss_pred hHHHHhhhhhhhhc
Confidence 45566777766543
No 364
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.66 E-value=3e+02 Score=29.85 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 516 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il 516 (587)
....+.+.+....+.-.-.++..+..+...+....+....+=.+.+.+.+.+.-.|.+..++.+.-.+...+-....+++
T Consensus 25 ~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~l 104 (970)
T KOG1988|consen 25 VLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFL 104 (970)
T ss_pred HHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 34445566666666666666666777766655554555555556667777788888888888876665555543444455
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 517 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
..+.......++.-|..++..++.+..-.++.
T Consensus 105 rri~~V~hsnDp~aRAllL~ilg~~s~lipEf 136 (970)
T KOG1988|consen 105 RRIFYVDHSNDPVARALLLRILGQLSALIPEF 136 (970)
T ss_pred heeEEeecCCCHHHHHHHHHHHHHhhhhcccc
Confidence 55555556678888888888888876655543
No 365
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.51 E-value=24 Score=30.59 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=49.3
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
...+|.|...+.+.+-..|..|...+..+....++. .++++++..++..+...+.+|...+.+.+..+...
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 346777777777766666777777777766665543 34566677777777777888888888877766543
No 366
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=49.53 E-value=98 Score=27.25 Aligned_cols=69 Identities=19% Similarity=0.100 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 007842 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (587)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
.+.+++.+....++.+...|+.+.-..-... .+......+++++...++|+.+.|+++.-.+|..++.+
T Consensus 116 ~~~li~~~~a~~~~~~~w~rraaiv~~l~~~---k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 116 WPDLIEEWAADAEEDNRWERRAAIVHQLVYK---KKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred CHHHHHHHHhccccchHHHHHHHHHHHHHHh---cCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666777776544433332 23445557889999999999999999888888888873
No 367
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=45.52 E-value=1.8e+02 Score=24.40 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHh-hccCC--chhHHHHHHHHHHHhhc
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLE-MINNP--HYLYRMTILRAISLLAP 504 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~-~l~d~--~~~~R~~a~~~l~~l~~ 504 (587)
+.+.+.+.+.+..++..+=..++..+..+...++...- .+.+++.+.. ++..+ ..+.|..+++++..+..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 44566666666556677777788888888776655321 2445555544 34333 24677888888888775
No 368
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.22 E-value=3.4e+02 Score=27.44 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=58.9
Q ss_pred hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---
Q 007842 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--- 314 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--- 314 (587)
+...+..++.....--.+..|...+++|.-+-. .+...+..++..|..++.-.+...|..+...+......+...
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN--k~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn 94 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRN--KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKN 94 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhc--cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccc
Confidence 445566666665555567888888888865432 223445578888888887777788888777777666644321
Q ss_pred -HHHHhHhHHHHHhccCCcHH
Q 007842 315 -LAIQHILPCVKELSSDSSQH 334 (587)
Q Consensus 315 -~~~~~i~~~l~~~~~d~~~~ 334 (587)
.....+-..+..++.+++..
T Consensus 95 ~klnkslq~~~fsml~~~d~~ 115 (616)
T KOG2229|consen 95 DKLNKSLQAFMFSMLDQSDST 115 (616)
T ss_pred chHHHHHHHHHHHHHhCCCch
Confidence 22223334445666666653
No 369
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=43.25 E-value=4.5e+02 Score=28.27 Aligned_cols=145 Identities=16% Similarity=0.101 Sum_probs=82.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhc
Q 007842 93 TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC 172 (587)
Q Consensus 93 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~ 172 (587)
.++.+.+..+.+.+-..+......-...-+...++.+.. .... ..++.++. .+.+.+-+.++..+-..+
T Consensus 11 ~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~---~t~s----~~~~~il~----~~~~P~~K~~~~~l~~~~ 79 (668)
T PF04388_consen 11 SLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYL---STNS----QRALEILV----GVQEPHDKHLFDKLNDYF 79 (668)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHh---hcCc----HHHHHHHH----hcCCccHHHHHHHHHHHH
Confidence 344566666666666666555443222222333333322 1111 12333332 222334567777777776
Q ss_pred CCCChHHHHHHHHhHHHHHHhhccc---hhh-hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--hhhhhchHHHH
Q 007842 173 QDDMPMVRRSAASNLGKFAATVEPA---HLK-TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVI 246 (587)
Q Consensus 173 ~d~~~~vr~~~~~~l~~l~~~~~~~---~~~-~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l 246 (587)
.. +.-|..++..|+.++..-+.- ... +.+-.++..+..|.+..+-..|+.+|..+...++. ..+.+.++.++
T Consensus 80 ~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 80 VK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred cC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 65 467888888888888764331 111 33444566667788888888999999888887775 33556666666
Q ss_pred HHhc
Q 007842 247 VNFS 250 (587)
Q Consensus 247 ~~~~ 250 (587)
..++
T Consensus 158 ~Rl~ 161 (668)
T PF04388_consen 158 GRLL 161 (668)
T ss_pred HHHH
Confidence 6655
No 370
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.78 E-value=2.5e+02 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=12.7
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 557 CLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 557 ~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.|.+|+....++=-..|.+-++.+.
T Consensus 177 lL~rLLkSn~PeDLqaANkLIK~lV 201 (594)
T KOG1086|consen 177 LLARLLKSNHPEDLQAANKLIKTLV 201 (594)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4444555555554455555555443
No 371
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=42.65 E-value=2.3e+02 Score=24.62 Aligned_cols=107 Identities=12% Similarity=-0.006 Sum_probs=48.9
Q ss_pred hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh-hHHhhHHHHHHHHhcCCCCc--chhhHHhhhHhhcCCCC-hHHH
Q 007842 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-DLVDWYIPLVKRLAAGEWFT--ARVSACGLFHIAYPSAP-DILK 161 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~~~~~~--~r~~a~~~l~~~~~~~~-~~~~ 161 (587)
.++.-+.+.....=..||..|..++..+...-.+. .... -.+.+......+... .-..+...+..+.+-+. +.++
T Consensus 7 ~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~y~ 85 (193)
T PF12612_consen 7 QIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPEYR 85 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhccHHHH
Confidence 33333334444556789999999999887332221 0000 112222222222110 00111122222222222 3355
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHh
Q 007842 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 193 (587)
..++.-+.-.....+..+.+.+..+|..++..
T Consensus 86 ~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 86 YSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred HHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 56666555555556666666666666665543
No 372
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=42.32 E-value=56 Score=19.20 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=21.4
Q ss_pred HHHHHHH-hcCCCCccHHHHHHHHHHHHHH
Q 007842 554 IRPCLVE-LTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 554 i~~~l~~-l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+...|.- ..+|+|.-||..|..+|+.|..
T Consensus 6 l~r~Lk~V~~~D~D~lvr~hA~~~Le~Le~ 35 (36)
T PF10304_consen 6 LYRTLKYVESTDNDDLVREHAQDALEELEA 35 (36)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 4444444 3579999999999999988753
No 373
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=41.75 E-value=33 Score=26.08 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=17.5
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842 518 VVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 518 ~l~~~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
.|..++++|++.||..++..+-.+.+
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~~p 76 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRYAP 76 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT-H
T ss_pred HHHHHHcCCChhHHHHHHHHHHHhCH
Confidence 56677888888888888776666543
No 374
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=41.58 E-value=1.2e+02 Score=22.48 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 490 LYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 490 ~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
..|.+++-.|+.+...++-.. +.+.++..|.+..+| ...++..+-++|..+-..-.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 456777777777777666542 344455555555554 56677777777777655543
No 375
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=41.54 E-value=2.1e+02 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=18.6
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (587)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
.+++++...++|.+.-||++.-.+|..++.
T Consensus 154 ~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 154 EIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 466666666666666666666666666665
No 376
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=40.68 E-value=2e+02 Score=23.31 Aligned_cols=67 Identities=15% Similarity=0.040 Sum_probs=40.2
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHH--hhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 007842 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (587)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~l~~l~~~~~~~~~~vR~~~~~~l~~l 424 (587)
.++..+...+..++......++..|+.++..-....++ ..-+|.+...+.++...+--.++.++..+
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l 126 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLL 126 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHh
Confidence 45677778888888888888888888877543322211 12245555555666655555555544443
No 377
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=39.95 E-value=4.6e+02 Score=27.44 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=87.0
Q ss_pred HhHhHHHHHhccCCc--HHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh--------cCCChHHHHHHHHhhhhhhh
Q 007842 318 QHILPCVKELSSDSS--QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 318 ~~i~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~ 387 (587)
...+.-+...+.++. |.--...++++|.++..+....-.+.++..+..++ +|+-.-|.......++.--+
T Consensus 480 ~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpR 559 (1053)
T COG5101 480 KYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPR 559 (1053)
T ss_pred HHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchH
Confidence 344555666667665 46677889999999877754433333333333332 23322222222222222111
Q ss_pred hhch-hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh----------hhhHHHHHHHHHHhcCCCchHHHHHH
Q 007842 388 VIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------GFFDDKLGALCMQWLQDKVYSIRDAA 456 (587)
Q Consensus 388 ~~~~-~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~~~~vr~~a 456 (587)
.+.. -.+...++..+.+++...+..++..++..+-.+++.+.. +.|...++.-+-....|-.+.-....
T Consensus 560 FLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htf 639 (1053)
T COG5101 560 FLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTF 639 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHH
Confidence 1111 134456677778888888889999999988888776532 33444444444445566666666667
Q ss_pred HHHHHHHHHHhCh
Q 007842 457 ANNLKRLAEEFGP 469 (587)
Q Consensus 457 ~~~l~~l~~~~~~ 469 (587)
.++.+.+.+....
T Consensus 640 YeAcg~vIse~p~ 652 (1053)
T COG5101 640 YEACGMVISEVPK 652 (1053)
T ss_pred HHHHhHHHhccch
Confidence 7777777765443
No 378
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=37.32 E-value=1.9e+02 Score=22.29 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=40.2
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
..+...+.+.+....+..|..++..+..+++..+... +...+.+.+.......++.+|....+.+..+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 4455555555555566777788888888877665432 2233344555555556666776665555544
No 379
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=36.01 E-value=5.3e+02 Score=26.97 Aligned_cols=298 Identities=10% Similarity=0.045 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcCh----h-------hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH-HHHHH-
Q 007842 98 EETCVRDKAVESLCRIGSQMRE----S-------DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL- 164 (587)
Q Consensus 98 ~~~~vr~~a~~~l~~l~~~~~~----~-------~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l- 164 (587)
.+..++.+.+..+..+..-+.. + ...+.+.|.+.+++... ..-..+..+...+.--.+++ ..+..
T Consensus 143 ~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~--khw~~afPL~t~lLCvS~~e~F~~~W~ 220 (552)
T PF14222_consen 143 KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKP--KHWNVAFPLVTTLLCVSPKEFFLSNWL 220 (552)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHHHHHhcCcHHHHHHHHH
Confidence 4667888888888887543321 1 12233444444444432 11222333333332223333 33333
Q ss_pred ---HHHHHHhcCCCChHHHHHHHHhHHHHHHhhc-----c--chhhhHHHHHHHHhhhCC-------chhHHHHHHHHHH
Q 007842 165 ---RSIYTQLCQDDMPMVRRSAASNLGKFAATVE-----P--AHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCA 227 (587)
Q Consensus 165 ---~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-----~--~~~~~~l~~~l~~l~~d~-------~~~vr~~a~~~l~ 227 (587)
+..+..-++|. ..|..++.++..+....= + ......+-+++..+.... +...-...++.+.
T Consensus 221 ~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~~~~~~lv~ii~ 298 (552)
T PF14222_consen 221 PSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDPEPLNPLVQIIR 298 (552)
T ss_pred HHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCChhhhhhHHHHHH
Confidence 33344445555 788888888888665432 1 223344445554444221 1133334445555
Q ss_pred HHhhhcChhhhhhchHHHHHHhcc-----CCcHHHHHHHHHHHHHHHHHhCCCccccc---------------------h
Q 007842 228 ALGKLLEPQDCVAHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGPEPTRMD---------------------L 281 (587)
Q Consensus 228 ~l~~~~~~~~~~~~l~~~l~~~~~-----d~~~~vR~~a~~~l~~~~~~~~~~~~~~~---------------------l 281 (587)
.++..-.+-...+.++|++..-.. .-+|+--..+++++-.+.........+.. -
T Consensus 299 ~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~ 378 (552)
T PF14222_consen 299 FIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEY 378 (552)
T ss_pred hHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCccccc
Confidence 555444333234456666654433 23466666778888777776543222110 1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHH------------------HhccCCc--HHHHHHHHH
Q 007842 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK------------------ELSSDSS--QHVRSALAS 341 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~------------------~~~~d~~--~~vr~~a~~ 341 (587)
++ .....++.-...-.....+++.+...++.......+.+.-. ....+.. -++-..+++
T Consensus 379 l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~~~~~~Lf~t~i~ 457 (552)
T PF14222_consen 379 LS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQKPQLDLFRTCIQ 457 (552)
T ss_pred cc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccccccccchhHHHHHHHH
Confidence 11 00011111112222344445555444332211000000000 0111112 233344444
Q ss_pred HHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh
Q 007842 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (587)
Q Consensus 342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~ 406 (587)
++..+. +.......++.++....-+.++.|+..+.++|..++...+ . ...++..+..++
T Consensus 458 aiPrcL---~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~--~~~vi~~Fa~Fi 516 (552)
T PF14222_consen 458 AIPRCL---PSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-N--RQQVITGFARFI 516 (552)
T ss_pred HccccC---CCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-C--HHHHHHHHHHHH
Confidence 444333 3333356778888888888899999999999999988763 1 134444454443
No 380
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=35.42 E-value=5.4e+02 Score=26.90 Aligned_cols=33 Identities=12% Similarity=-0.030 Sum_probs=22.4
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhccc
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~ 506 (587)
..++..+....-+.++.+|..|..+|..++...
T Consensus 470 ~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 470 KSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 455666666666667777777777777777655
No 381
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=5.7e+02 Score=26.87 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=115.1
Q ss_pred HHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHH
Q 007842 298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 377 (587)
Q Consensus 298 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (587)
..|+.++..+....+.-.+.+.++..+..++.++...++..++.++..+...-+.....-.++-.+..+++-.+-++...
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~ 382 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPD 382 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhh
Confidence 35666666666665555666788888888889998889999999888776543211122234555566666666667666
Q ss_pred HHHhhhhhhhhh--chhhH----Hhh-HHHHHHHH--hcCCChHHHHHHHHHHHHHHH--hh-Ch-------hhhHHHHH
Q 007842 378 IISKLDQVNQVI--GIDLL----SQS-LLPAIVEL--AEDRHWRVRLAIIEYIPLLAS--QL-GV-------GFFDDKLG 438 (587)
Q Consensus 378 a~~~l~~l~~~~--~~~~~----~~~-~l~~l~~~--~~~~~~~vR~~~~~~l~~l~~--~~-~~-------~~~~~~l~ 438 (587)
++..+..+--.- +.... .+. .-...... +.......|..--+.=..+-. .. .+ ......+.
T Consensus 383 ~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea~e~aeek~k~~sEiLkiVF 462 (704)
T KOG2153|consen 383 MITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEAEESAEEKMKKQSEILKIVF 462 (704)
T ss_pred HHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHH
Confidence 666655542110 00000 000 00000000 000000000000000000000 00 00 00112344
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHh--hcc------cChHH
Q 007842 439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL--APV------MGSEI 510 (587)
Q Consensus 439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l--~~~------~~~~~ 510 (587)
.+++..+++.-..+-.++..-+..+......++ ...++..+.+++.|.+..+|++-...-+.+ ... ++...
T Consensus 463 tiYFrILkn~~~tll~~vlEGlakf~h~invef-~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~lniD~~~ 541 (704)
T KOG2153|consen 463 TIYFRILKNDRYTLLGAVLEGLAKFAHLINVEF-LGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLNIDLGK 541 (704)
T ss_pred HHHHHHHhcchhhHHHHHHhhHHHHhhhccHHH-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeeccCHHH
Confidence 556667777666666777777777777666664 455666667777777555655443333333 222 22233
Q ss_pred HHhhHHHHHHhhcCCCChh
Q 007842 511 TCSRLLPVVINASKDRVPN 529 (587)
Q Consensus 511 ~~~~il~~l~~~l~d~~~~ 529 (587)
+..++...+..+..+++.+
T Consensus 542 fv~~lY~~l~~~~~~~~~~ 560 (704)
T KOG2153|consen 542 FVDHLYKMLFPMNLGPDDD 560 (704)
T ss_pred HHHHHHHHhcccccCCCcc
Confidence 5555555555555555444
No 382
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=34.46 E-value=6.5e+02 Score=27.52 Aligned_cols=111 Identities=9% Similarity=0.003 Sum_probs=58.1
Q ss_pred hhhHHHHhhhhcchhhHHHHHHHHHHHHHHhh---cChhhHHh----hHHHHHHHHhcCCCCcc-hhhH-HhhhHhhcCC
Q 007842 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQ---MRESDLVD----WYIPLVKRLAAGEWFTA-RVSA-CGLFHIAYPS 155 (587)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~---~~~~~~~~----~l~~~l~~l~~~~~~~~-r~~a-~~~l~~~~~~ 155 (587)
..++|-+..++-++++..|+=|...+..+... +..+.+.. .+...+..+ +...+.. .... =..+..+...
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 45667677777788999999999999998764 45444432 333344444 2211111 1110 1122233344
Q ss_pred CChHH----HHH-----HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc
Q 007842 156 APDIL----KTE-----LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (587)
Q Consensus 156 ~~~~~----~~~-----l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 196 (587)
++++. ... +..++..-+.+.....-...++++..+.+..+.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 44331 111 344455445555344445566777777776654
No 383
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.46 E-value=1.9e+02 Score=27.85 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=44.4
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhcccC-hHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
.+..++.+.++++..-|.-+...++.....-+ ...-...+.+.+..++.|+++.+|...+.+|++.
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 34455666777777777777777766665555 3434566667777777777777777777777765
No 384
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.42 E-value=98 Score=24.15 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007842 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
|..-.++++.+-+.|++.+|...|+..|.+.+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4556788888999999999999999999888763
No 385
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=32.83 E-value=2.1e+02 Score=21.76 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhcc
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMIN 485 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~ 485 (587)
+.++..+...+..-.++||.-+...|.-+.+.++.+. ....+++.+..++.
T Consensus 10 ~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 10 PLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 3445555556666677777777777777777666541 12344555544443
No 386
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=31.67 E-value=5e+02 Score=25.33 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---c---hhhhHHHHHHHHhhhCCch
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQD 216 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d~~~ 216 (587)
....++|-+..++....-..|.++..++..+...... + ...+.+..++..+.+|.+.
T Consensus 241 ~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssK 303 (427)
T KOG2842|consen 241 LDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSK 303 (427)
T ss_pred HHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhh
Confidence 3344667777787777778888887777776665533 1 2345577777777766544
No 387
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.61 E-value=5.5e+02 Score=25.86 Aligned_cols=297 Identities=15% Similarity=0.145 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhc--cchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh--hhcCh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG--KLLEP 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~--~~~~~ 235 (587)
....+++-+..+....++..|+.....+.++.-.-+ +.-+..-++|.+..+++++... ..|...+-.+. +.+..
T Consensus 342 ~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~ 419 (791)
T KOG1222|consen 342 EQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKA 419 (791)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHH
Confidence 345677777778888888888888888777654332 2234445677777777666541 11222221111 11111
Q ss_pred hhhhhchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCC-Ccc-ccchHHH-HHHhcCCChHHHHHHHHHhHHHHHhhh
Q 007842 236 QDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGP-EPT-RMDLVPA-YVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 236 ~~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~-~~~l~~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
-.....+++.+.+ .+...+.+|-...+...-+++..-.+ +.. ...-+.. +...++..++- -++.+..+..+-
T Consensus 420 MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHe 495 (791)
T KOG1222|consen 420 MFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHE 495 (791)
T ss_pred HHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhcc
Confidence 1112233443332 33444445544444444444432111 000 0111222 22233333322 233344444444
Q ss_pred CHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc----cchhHH--HHhHHHHHHHhhcCC--ChHHHHHHHHh
Q 007842 312 NPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL----LGKDAT--IEQLLPIFLSLLKDE--FPDVRLNIISK 381 (587)
Q Consensus 312 ~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~----~~~~~~--~~~l~~~l~~~l~d~--~~~vr~~a~~~ 381 (587)
|+. .|...+-........|.+.. ..+++++.++.. ++...+ ...++|.+...++.. ..+.....+-.
T Consensus 496 g~tqn~FidyvgdLa~i~~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~ 572 (791)
T KOG1222|consen 496 GATQNMFIDYVGDLAGIAKNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIA 572 (791)
T ss_pred chHHHHHHHHHHHHHHHhhcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHH
Confidence 432 12222212222223344444 444555555432 222222 335788887777643 23444455555
Q ss_pred hhhhhhhhchhhHH--hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHh-hChhhh-HH-HHHHHHHHhcCCCchHHHH
Q 007842 382 LDQVNQVIGIDLLS--QSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQ-LGVGFF-DD-KLGALCMQWLQDKVYSIRD 454 (587)
Q Consensus 382 l~~l~~~~~~~~~~--~~~l~~l~~~~~~~--~~~vR~~~~~~l~~l~~~-~~~~~~-~~-~l~~~l~~~l~d~~~~vr~ 454 (587)
++.++....-..+. ..++|.+.++++.. +...-..++-.+..+..+ ...+.. ++ ..-..++.++.|.+..+|.
T Consensus 573 ~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRk 652 (791)
T KOG1222|consen 573 CGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRK 652 (791)
T ss_pred hhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHH
Confidence 55554433222211 23666666665432 222222222222222221 111111 11 1233466777888988888
Q ss_pred HHHHHHHHHHH
Q 007842 455 AAANNLKRLAE 465 (587)
Q Consensus 455 ~a~~~l~~l~~ 465 (587)
.+-.+|.-+..
T Consensus 653 VCDn~LdIiae 663 (791)
T KOG1222|consen 653 VCDNALDIIAE 663 (791)
T ss_pred HHHHHHHHHHH
Confidence 87777765543
No 388
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=31.27 E-value=7.3e+02 Score=27.16 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 007842 261 VANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 261 a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
+.+++.++...+.++. +...++..+.+++++.+++++..+..++..++...
T Consensus 76 amea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~ 128 (819)
T KOG1877|consen 76 AMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIE 128 (819)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhc
Confidence 4444444444444332 11233444444444445555555555555555443
No 389
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.18 E-value=2.1e+02 Score=20.92 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=44.7
Q ss_pred hhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhh-hchHHHHhhHHHHHHHhcCCCCc--cHHHHHHHHHHHHHH
Q 007842 513 SRLLPVVINASKDR--VPNIKFNVAKVLQSLIPI-VDQSMVEKTIRPCLVELTEDPDV--DVRFFATQAIQSIDH 582 (587)
Q Consensus 513 ~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~-~~~~~~~~~i~~~l~~l~~d~d~--~Vr~~a~~al~~l~~ 582 (587)
+.++..+....+|. ..+||.+|-++...+... ..+..-....+..|.+..+|+.- -.|......+++|..
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis~LE~ 90 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNVISQLET 90 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence 45556666666665 347888888888777652 22333445677888888888763 356666666666544
No 390
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.88 E-value=4.8e+02 Score=24.94 Aligned_cols=144 Identities=10% Similarity=0.098 Sum_probs=85.7
Q ss_pred HHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChHHH-----hhhhHHHHHhhc--cCCchhHHHHHHHHHHHhhcccChH
Q 007842 438 GALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSE 509 (587)
Q Consensus 438 ~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l~~~~~~~ 509 (587)
+..++.++.| +...+|..+=.+++.+-...|.+.. .....+.+..++ ...++.+-+.++.++..++-..+..
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 4456777777 6677887766666666655555432 233445555432 2346778888888888887544331
Q ss_pred ---HHHhhHHHHHHhhc-CCC-ChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 510 ---ITCSRLLPVVINAS-KDR-VPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 510 ---~~~~~il~~l~~~l-~d~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.+....-...++.+ ..| ...|+.+++..+.++...-... .+...=.+.|........++++..|..||..++
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 11111222223322 233 5579999999999998654332 333333445555556667788888888887764
No 391
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.88 E-value=5.7e+02 Score=25.74 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=60.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHH
Q 007842 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 438 (587)
+..++..+-++..+++--.-+++|.+++.....+ .......+...+......+|..+++.+..+.-.. ..|-..++
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee--~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs--~~FR~lii 83 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE--VRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRS--KLFRTLII 83 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH--HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence 3444445555555555555666666666554433 2344555666667777778888877777664321 11211111
Q ss_pred HHHHHhc-----CCC----------chHHHHHHHHHHHHHHHHhChH
Q 007842 439 ALCMQWL-----QDK----------VYSIRDAAANNLKRLAEEFGPE 470 (587)
Q Consensus 439 ~~l~~~l-----~d~----------~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
.-+..+| .++ -..+|..|+.++..+-..+|..
T Consensus 84 ~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~ 130 (661)
T KOG2374|consen 84 ENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFH 130 (661)
T ss_pred hCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1111111 121 2468899999998888777754
No 392
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=29.63 E-value=3.1e+02 Score=22.33 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=13.9
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 514 RLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
.+.+.++.-+.+++-+.|.+....+..++
T Consensus 40 dL~~cIle~le~~~lN~R~nI~~fID~l~ 68 (139)
T PF12243_consen 40 DLWSCILEQLEKENLNTRINIFYFIDSLC 68 (139)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 34444444444445555555554444443
No 393
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.27 E-value=7e+02 Score=26.28 Aligned_cols=259 Identities=15% Similarity=0.146 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc-----------------------hhhhHHHHH-------HHH
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-----------------------HLKTDIMSI-------FED 209 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-----------------------~~~~~l~~~-------l~~ 209 (587)
..-..+.-+...+.+.++.++..+.-+|-.+...+-+. .+...++.. +..
T Consensus 207 ~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~ 286 (704)
T KOG2153|consen 207 ENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQ 286 (704)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566677777888888877777777665421 111222221 222
Q ss_pred hhhCC---ch---hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 007842 210 LTQDD---QD---SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (587)
Q Consensus 210 l~~d~---~~---~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~ 283 (587)
+.++. .+ ..-..|.+++..+....+.-.+.+.++..+...++|+...++..+++++-.+...=+.....-.++.
T Consensus 287 ~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr 366 (704)
T KOG2153|consen 287 FVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVR 366 (704)
T ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 22222 00 1222455555555555555556777888888888888888888888888877653221111223455
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhh--hCHHHH----HHhHhHH-HHH--hccCCcHHHHHHHHH----HHHcccccc
Q 007842 284 AYVRLLRDNEAEVRIAAAGKVTKFCRI--LNPELA----IQHILPC-VKE--LSSDSSQHVRSALAS----VIMGMAPLL 350 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~----~~~i~~~-l~~--~~~d~~~~vr~~a~~----~l~~l~~~~ 350 (587)
.+..+++-.+-++.-.++..+..+-.. ...... ...-... ..+ .+......-+..--+ ....=+...
T Consensus 367 ~i~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea~e~ 446 (704)
T KOG2153|consen 367 IINSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEAEES 446 (704)
T ss_pred HHHHHhhhhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 555555555555555555554433211 000000 0000000 000 011111001111000 000000000
Q ss_pred ch------hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHH
Q 007842 351 GK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419 (587)
Q Consensus 351 ~~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~ 419 (587)
.. ......+..++...+++....+-.++...+..+...+..+.+ ..++..+.+++.|.....|.+...
T Consensus 447 aeek~k~~sEiLkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~-~dll~vlk~ll~d~~~~~re~l~c 520 (704)
T KOG2153|consen 447 AEEKMKKQSEILKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFL-GDLLKVLKELLEDIELSYREALLC 520 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHh-hhHHHHHHHHHHhhhHHHHHHHHH
Confidence 01 123445666677778876555666667777776655544433 566777788888876666655443
No 394
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=28.95 E-value=2e+02 Score=21.79 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=30.4
Q ss_pred hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh
Q 007842 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 120 (587)
+.+.++..+....++=.+.||.-+...|.-+.+..++.
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 44556666667777888999999999999999988876
No 395
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.50 E-value=6.5e+02 Score=25.71 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHhhhh
Q 007842 529 NIKFNVAKVLQSLIPI 544 (587)
Q Consensus 529 ~vR~~~~~~l~~l~~~ 544 (587)
..|..+++.+..+...
T Consensus 215 ~~RlkI~ELiAeLLhc 230 (475)
T PF04499_consen 215 FERLKICELIAELLHC 230 (475)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 4677777777776543
No 396
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.56 E-value=1.7e+02 Score=22.87 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=24.0
Q ss_pred HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 007842 472 AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (587)
Q Consensus 472 ~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~ 504 (587)
+..=.++.+++-+.|++..++..|+..+...+.
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 344456777777788888888888888777765
No 397
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.54 E-value=5.7e+02 Score=24.35 Aligned_cols=167 Identities=13% Similarity=0.129 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCc-HHHHHHHHHHHHccccccchhHHHHhHHHH-HHHhhcCC
Q 007842 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGKDATIEQLLPI-FLSLLKDE 370 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d~ 370 (587)
.-.+|.+|+.++..+... ++.....++..+...-.+.+ .......+..+-........+.+...+.-. +.+++.|+
T Consensus 51 ~f~lR~AA~~c~kay~~~--N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn 128 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYN--NEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDN 128 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT---HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHHhc--CHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcC
Confidence 578999999999888753 33222223332222222211 111112444433221111223333333333 34555554
Q ss_pred ChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHhhCh---hhhH-HHHHHHH
Q 007842 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-----EDRHWRVRLAIIEYIPLLASQLGV---GFFD-DKLGALC 441 (587)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~-----~~~~~~vR~~~~~~l~~l~~~~~~---~~~~-~~l~~~l 441 (587)
++-|..+.+. .......|.+. ..+++.+..++ .+.+.+++...+..+..+.-.... +++. ..-++.+
T Consensus 129 -~~~Ke~al~V-~~~~~~~ge~~--vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 129 -PEAKEQALRV-TEGDESSGEEP--VTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp -HHHHHHHTT---EE--STTS----EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHH
T ss_pred -HHHHHHHHcc-cCCCCCCCCCc--ccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHH
Confidence 5555555443 11112223222 23444444432 256788888877777665432110 1111 0123333
Q ss_pred HHh---cCCCchHHHHHHHHHHHHHHH
Q 007842 442 MQW---LQDKVYSIRDAAANNLKRLAE 465 (587)
Q Consensus 442 ~~~---l~d~~~~vr~~a~~~l~~l~~ 465 (587)
+.. -.+.+.-||.-++-.||....
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 332 244566677666666666554
No 398
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.15 E-value=3.2e+02 Score=26.40 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC-hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
+..+..++.+++++...-|..++..++...-.-+ ...-.+.+.+.+..++.|++..+|...+.+|++.-
T Consensus 6 ~~~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~ 75 (364)
T COG5330 6 QSTDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQCE 75 (364)
T ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhCC
Confidence 4455667888899999999888888887766555 34445778888888999999999999999998864
No 399
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.05 E-value=5.7e+02 Score=24.25 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=48.2
Q ss_pred hhHHHHHHhhcCCCChh-HHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 513 SRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~-vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
..++..+...++.++++ .-..|+.-++.+....++. ...-.....+.++.+.+|++||+.|.+|+..+..
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 34677777778777776 2334455555555554432 1223566788889999999999999999988764
No 400
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=25.81 E-value=57 Score=17.14 Aligned_cols=18 Identities=33% Similarity=0.720 Sum_probs=7.8
Q ss_pred hHHHHHhhccCCchhHHH
Q 007842 476 ITPQVLEMINNPHYLYRM 493 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~ 493 (587)
++|.+...+++++..+|.
T Consensus 4 IVpyi~~~L~N~~LAl~l 21 (24)
T PF09268_consen 4 IVPYILNTLQNPDLALRL 21 (24)
T ss_dssp HHHHHHHTT--HHHHHHH
T ss_pred chhHHHhccCCHHHHHHH
Confidence 455555555555444443
No 401
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.73 E-value=2.7e+02 Score=20.40 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=12.7
Q ss_pred HHHHHHHhhhCCc--hhHHHHHHHHHHHHh
Q 007842 203 IMSIFEDLTQDDQ--DSVRLLAVEGCAALG 230 (587)
Q Consensus 203 l~~~l~~l~~d~~--~~vr~~a~~~l~~l~ 230 (587)
.+.++....+|.. .++|++|-++...+.
T Consensus 18 ~~~lL~~Ii~DttVPRNIRraA~~a~e~L~ 47 (93)
T COG1698 18 VMQLLDEIIQDTTVPRNIRRAAEEAKEALN 47 (93)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHh
Confidence 3344444444442 245555555544443
No 402
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=24.02 E-value=1.9e+02 Score=22.15 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=15.9
Q ss_pred HHHHhhcCCChHHHHHHHHhhhhhh
Q 007842 362 IFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (587)
.+..+++++++.||..|+...-.+.
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHHcCCChhHHHHHHHHHHHhC
Confidence 3556778888888887776655544
No 403
>PHA02503 putative transcription regulator; Provisional
Probab=23.82 E-value=1.9e+02 Score=18.08 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=12.6
Q ss_pred HHhChHHHhhhhHHHHHhh
Q 007842 465 EEFGPEWAMQHITPQVLEM 483 (587)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~~ 483 (587)
+.+..+|..+.++|.+.+.
T Consensus 27 ~~~s~~fl~~slipql~ew 45 (57)
T PHA02503 27 SVYSKDFLQNSLIPQLYEW 45 (57)
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 4555566667788887764
No 404
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.44 E-value=9.6e+02 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHh
Q 007842 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 193 (587)
+.-.+.+..++.++++..++++++.+.++...
T Consensus 583 e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~ 614 (748)
T KOG4151|consen 583 EKALGKIEELMTEENPALQRAALESIINLLWS 614 (748)
T ss_pred HhcchhhHHHhhcccHHHHHHHHHHHHHHHhh
Confidence 34445566667778888888888888887654
No 405
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=23.22 E-value=4.3e+02 Score=21.85 Aligned_cols=102 Identities=9% Similarity=0.080 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh--ChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh
Q 007842 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
...-..-+..+++++...-+...+.. +.... |.+ .....++..+..--.....--+..|++.||.+.-..
T Consensus 20 ~a~Qt~~lielLk~~~~~~~~~lldL---L~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY-- 94 (154)
T PF11791_consen 20 NAEQTAELIELLKNPPAGEEAFLLDL---LTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY-- 94 (154)
T ss_dssp -HHHHHHHHHHHHS--TT-HHHHHHH---HHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST--
T ss_pred CHHHHHHHHHHHhCCCCccHHHHHHH---HHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC--
Confidence 33445556667776665533333333 22222 222 233455555554433445556777777777776532
Q ss_pred HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 509 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 509 ~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
=+..++.++.+.+..+...++++|....-.++
T Consensus 95 ------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 95 ------NVQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp ------THHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred ------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 24577888878888888888888887765543
No 406
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=23.22 E-value=1.3e+02 Score=21.22 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=24.4
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
-+-++.+..+..+..+.-|..++++|+.|..+.
T Consensus 38 GYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 38 GYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 455677777777788888888888888776554
No 407
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.17 E-value=3.5e+02 Score=20.80 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
..++..+.+.+....+..|..++..+..+++..+. ..+...+.+.+.......+..+|......+..
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~i 105 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555666666666667777777888888777642 23334445555555556666666655554443
No 408
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=1.1e+03 Score=26.09 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=33.0
Q ss_pred HHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 007842 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~ 429 (587)
+...+.+++...|-..++....-.+.+.+-....+++..+.....+.++.-|..++..++.+...++
T Consensus 68 LaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip 134 (970)
T KOG1988|consen 68 LADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP 134 (970)
T ss_pred HHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc
Confidence 4444555566666666555554333332222222333333333445566666666666666655443
No 409
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=22.24 E-value=1.3e+03 Score=26.86 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=42.2
Q ss_pred HhHHHHHhccCCcHHHHHHHHHHHHccccccch-hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 320 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (587)
++......+-..+..+-.....++.++....+. ......++...+-.+.|++.+||..|++.|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 444444444455666666666666555422211 11234567777777889999999999998887653
No 410
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.07 E-value=4.8e+02 Score=21.88 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--hhhhchHHHHHH-hccCC--cHHHHHHHHHHHHHHHHHhCCC
Q 007842 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVN-FSQDK--SWRVRYMVANQLYELCEAVGPE 275 (587)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~-~~~d~--~~~vR~~a~~~l~~~~~~~~~~ 275 (587)
..+.+.+.+....+++.+-..+++.+..+...+... ...+.+++.+.. .++.+ ....|..+.+.+..++..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~---- 147 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD---- 147 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC----
Confidence 445555555554455767677777777777665442 112333444333 43322 345888899999888863
Q ss_pred ccccchHHHHHHh
Q 007842 276 PTRMDLVPAYVRL 288 (587)
Q Consensus 276 ~~~~~l~~~l~~~ 288 (587)
++.++..+.++
T Consensus 148 --p~~l~~lf~NY 158 (168)
T PF12783_consen 148 --PQFLVDLFVNY 158 (168)
T ss_pred --hhHHHHHHHHc
Confidence 44566666654
No 411
>COG2733 Predicted membrane protein [Function unknown]
Probab=22.05 E-value=7.6e+02 Score=24.21 Aligned_cols=24 Identities=13% Similarity=0.204 Sum_probs=17.6
Q ss_pred hccCCchhHHHHHHHHHHHhhccc
Q 007842 483 MINNPHYLYRMTILRAISLLAPVM 506 (587)
Q Consensus 483 ~l~d~~~~~R~~a~~~l~~l~~~~ 506 (587)
-.+++++.+|.....++..+++.+
T Consensus 309 D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 309 DYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred cccCchhHHHHHHHHHHHHHHHHH
Confidence 356777888888888887777644
No 412
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=21.94 E-value=2.9e+02 Score=20.48 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 532 FNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 532 ~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
-.++-.|+.++..++.+ .+...++..|....+| ..-|+..+.++|+.+.
T Consensus 7 H~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 7 HAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFK 57 (90)
T ss_dssp HHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHH
Confidence 33444444444333322 2334444444444443 3344444444444433
No 413
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=7.3e+02 Score=23.81 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcC-CC-hHHHHHHHHHhHHHHHhhhCH--HHHHHhHhHHHHH
Q 007842 254 SWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLR-DN-EAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKE 326 (587)
Q Consensus 254 ~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~-d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~ 326 (587)
+|.|-..++-++..++-..++.. .....-...++.++ .+ ...|++.++..+..+...-.. ..+...-+..++.
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~ 422 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIR 422 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHH
Confidence 45666666666665554322110 01111222222222 12 245666666666655543211 1222222334444
Q ss_pred hccCCcHHHHHHHHHHHHccc
Q 007842 327 LSSDSSQHVRSALASVIMGMA 347 (587)
Q Consensus 327 ~~~d~~~~vr~~a~~~l~~l~ 347 (587)
.....++.++..+-.+|..++
T Consensus 423 ~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 423 TAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHhcCccHHHHHHHHHHhcC
Confidence 445566666666666666554
No 414
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=21.36 E-value=6.5e+02 Score=23.23 Aligned_cols=63 Identities=32% Similarity=0.358 Sum_probs=42.4
Q ss_pred CCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccc
Q 007842 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF 74 (587)
Q Consensus 4 ~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l 74 (587)
+|+.+.-+..|+..++.+|...| .+.+.++.. .-..++|+|.+..+.+ ++.+...+.+.+-.+
T Consensus 8 g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~------~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV~L 70 (266)
T PF04821_consen 8 GDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEW------NIVQKDLIPILISYKD-DDKLFLACLRLLVNL 70 (266)
T ss_pred CHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHh------chhhhhHHHHHHhccC-chHHHHHHHHHHHHh
Confidence 44555567889999999999888 666666542 2344699999987654 455555666655444
No 415
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=21.21 E-value=3.6e+02 Score=25.45 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=49.1
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH-HHHhhHHHHHHHhcCC---CCccHHHHHHHHHHHH
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTED---PDVDVRFFATQAIQSI 580 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d---~d~~Vr~~a~~al~~l 580 (587)
..+...+..++..+++.-+.+++..|..+.+.++.- .....+...+.++..+ .-.|++..|..-++.|
T Consensus 226 ~~i~~~l~~~L~s~eym~iRNai~vL~~i~~~FP~v~~~~~~l~~~l~~l~~~e~~~R~Dlk~~a~~~~~~L 297 (298)
T PF11262_consen 226 KRITKALISCLESKEYMHIRNAIIVLKKISPVFPVVDDHGEKLEKALEKLLEEEKGKREDLKLLANSYLGHL 297 (298)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhc
Confidence 445566777788888888889999999988887764 3445677777776543 4678888887766654
No 416
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=20.75 E-value=9.2e+02 Score=24.71 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhCC------CccccchHHHHHHhc-CCCh-HHHHHHHHHhHHHHHhhhCH--------------HHHHH
Q 007842 261 VANQLYELCEAVGP------EPTRMDLVPAYVRLL-RDNE-AEVRIAAAGKVTKFCRILNP--------------ELAIQ 318 (587)
Q Consensus 261 a~~~l~~~~~~~~~------~~~~~~l~~~l~~~l-~d~~-~~vr~~a~~~l~~l~~~~~~--------------~~~~~ 318 (587)
.+-++|.+...+.- +...+.++|.-++.+ .+.. ...|.+|+..+..+...-+. ..-.+
T Consensus 17 falalg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~ln 96 (589)
T PF11229_consen 17 FALALGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLN 96 (589)
T ss_pred HHHHHHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHH
Confidence 45567777664421 233456777766654 3333 45677777777766543220 11235
Q ss_pred hHhHHHHHhccCC-cHHHHHHHHHHHHcccc-----------------ccchhHHHHhHHHHHHHhhcCCChHH----HH
Q 007842 319 HILPCVKELSSDS-SQHVRSALASVIMGMAP-----------------LLGKDATIEQLLPIFLSLLKDEFPDV----RL 376 (587)
Q Consensus 319 ~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~-----------------~~~~~~~~~~l~~~l~~~l~d~~~~v----r~ 376 (587)
+++..+.+.+..+ ...++..++..++.+-- +++...+....+.++...=+...+.| ..
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 5666666666544 45677777777766421 11222344455555555544443333 33
Q ss_pred HHHHhhhhhhhhhchh-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhhhHHHHHHHHHHhcCCCchHHH
Q 007842 377 NIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDKVYSIR 453 (587)
Q Consensus 377 ~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr 453 (587)
.+++.+..+.+.+.-. .....++..+..+ +-...+...+++....=++.-. ..+....+.|.++. .-+...|
T Consensus 177 vvl~~ia~vgeS~qyPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~---sLs~~tk 251 (589)
T PF11229_consen 177 VVLKPIATVGESYQYPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIH---SLSVNTK 251 (589)
T ss_pred HHHHHhhhcCCCCCCCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhh---hhhHHHH
Confidence 3344444433332211 1112222222222 1223444444332211111111 11111223333332 2344567
Q ss_pred HHHHHHHHHHHHHhChHHHhhhhHH-HHHhhcc----CCchhHHHHHHHHHHHhhcc
Q 007842 454 DAAANNLKRLAEEFGPEWAMQHITP-QVLEMIN----NPHYLYRMTILRAISLLAPV 505 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~----d~~~~~R~~a~~~l~~l~~~ 505 (587)
...+..+..+++....+.. ..+.. .+.+.++ -.++....+++..+..-.+.
T Consensus 252 ~~L~~Sl~~wmkhVsedqi-Q~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKl 307 (589)
T PF11229_consen 252 KYLFESLSLWMKHVSEDQI-QAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKL 307 (589)
T ss_pred HHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcC
Confidence 7777778888877776643 22222 1222222 23567777777777665543
No 417
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=20.74 E-value=1.9e+02 Score=18.78 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=17.6
Q ss_pred hhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 552 KTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 552 ~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
+.+...|.+-...-+++.|...++||--+.
T Consensus 18 ~~L~~lL~~~~~~L~p~lR~~lv~aLiLLR 47 (52)
T PF08158_consen 18 QELIDLLRNHHTVLDPDLRMKLVKALILLR 47 (52)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 444555555445556777777777765543
Done!