Query 007842
Match_columns 587
No_of_seqs 295 out of 2395
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 11:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 5.4E-64 1.8E-68 525.1 60.1 579 3-581 4-586 (588)
2 1b3u_A Protein (protein phosph 100.0 1.2E-48 4.1E-53 408.9 48.4 529 55-585 18-551 (588)
3 4fdd_A Transportin-1; heat rep 100.0 4.5E-36 1.5E-40 325.8 52.9 568 15-586 54-703 (852)
4 4fdd_A Transportin-1; heat rep 100.0 1.1E-35 3.9E-40 322.6 45.9 569 12-583 93-743 (852)
5 1u6g_C TIP120 protein, CAND1; 100.0 2.5E-35 8.7E-40 332.2 46.7 573 9-585 6-682 (1230)
6 2bpt_A Importin beta-1 subunit 100.0 2E-34 6.8E-39 314.9 52.1 574 11-586 136-816 (861)
7 2bpt_A Importin beta-1 subunit 100.0 2.5E-34 8.7E-39 314.1 49.5 572 12-585 98-766 (861)
8 1u6g_C TIP120 protein, CAND1; 100.0 1.8E-34 6.2E-39 325.3 46.0 569 11-582 50-721 (1230)
9 1qgr_A Protein (importin beta 100.0 5.5E-33 1.9E-37 304.2 44.9 571 13-586 94-831 (876)
10 1qgr_A Protein (importin beta 100.0 8E-32 2.7E-36 294.9 53.2 574 11-586 130-875 (876)
11 2vgl_B AP-2 complex subunit be 99.9 1.1E-24 3.8E-29 224.8 37.2 504 10-580 14-530 (591)
12 1ibr_B P95, importin beta-1 su 99.9 1.5E-23 5.1E-28 211.9 36.9 382 171-560 9-458 (462)
13 1jdh_A Beta-catenin; beta-cate 99.9 2.1E-23 7.2E-28 214.6 32.3 475 71-580 2-528 (529)
14 3now_A UNC-45 protein, SD10334 99.9 1.2E-20 3.9E-25 195.0 49.2 570 12-582 52-737 (810)
15 1ibr_B P95, importin beta-1 su 99.9 4.2E-23 1.4E-27 208.6 30.8 336 154-523 81-460 (462)
16 2z6h_A Catenin beta-1, beta-ca 99.9 2.8E-22 9.4E-27 210.0 36.0 474 74-582 2-527 (644)
17 2z6g_A B-catenin; FULL-length, 99.9 4.4E-22 1.5E-26 211.5 36.5 489 90-582 119-663 (780)
18 3now_A UNC-45 protein, SD10334 99.9 4.2E-21 1.4E-25 198.3 42.1 570 11-582 94-782 (810)
19 2z6g_A B-catenin; FULL-length, 99.9 1.2E-21 4E-26 208.2 36.3 515 11-546 117-666 (780)
20 1wa5_B Importin alpha subunit; 99.9 8.5E-22 2.9E-26 201.9 33.2 377 204-581 89-509 (530)
21 2vgl_B AP-2 complex subunit be 99.9 2.4E-21 8.1E-26 200.0 35.9 475 4-504 44-532 (591)
22 2jdq_A Importin alpha-1 subuni 99.9 1E-21 3.5E-26 197.6 31.6 378 204-581 22-442 (450)
23 2jdq_A Importin alpha-1 subuni 99.9 1.5E-21 5.2E-26 196.4 31.7 379 165-543 22-443 (450)
24 1w63_A Adapter-related protein 99.9 4.9E-21 1.7E-25 198.1 32.9 530 9-581 10-576 (618)
25 1wa5_B Importin alpha subunit; 99.9 6.3E-21 2.2E-25 195.4 32.0 380 164-544 88-511 (530)
26 2z6h_A Catenin beta-1, beta-ca 99.9 8.5E-20 2.9E-24 191.2 37.7 498 10-526 15-549 (644)
27 4b8j_A Importin subunit alpha- 99.9 4.5E-20 1.5E-24 189.2 33.6 377 204-581 76-495 (528)
28 4b8j_A Importin subunit alpha- 99.9 1.4E-19 4.7E-24 185.6 34.2 379 165-544 76-497 (528)
29 1jdh_A Beta-catenin; beta-cate 99.9 3.2E-19 1.1E-23 183.4 34.6 475 11-541 19-528 (529)
30 2vgl_A Adaptor protein complex 99.8 3.6E-18 1.2E-22 175.9 35.7 540 5-581 7-588 (621)
31 1w63_A Adapter-related protein 99.8 1.6E-18 5.6E-23 179.3 28.4 506 10-543 35-577 (618)
32 3ul1_B Importin subunit alpha- 99.8 2.9E-17 9.8E-22 166.5 31.3 375 205-579 60-475 (510)
33 3tpo_A Importin subunit alpha- 99.8 7.3E-17 2.5E-21 164.5 32.5 375 205-579 79-494 (529)
34 1oyz_A Hypothetical protein YI 99.8 5.9E-18 2E-22 158.0 21.4 255 280-579 23-279 (280)
35 3ul1_B Importin subunit alpha- 99.8 1.3E-16 4.5E-21 161.6 32.3 379 165-543 59-478 (510)
36 3tpo_A Importin subunit alpha- 99.8 7.2E-16 2.5E-20 157.2 36.1 379 165-543 78-497 (529)
37 1oyz_A Hypothetical protein YI 99.8 2.3E-17 7.9E-22 154.0 22.3 255 241-540 23-279 (280)
38 1wa5_C Importin alpha RE-expor 99.8 1.9E-14 6.4E-19 157.7 45.4 563 13-585 39-751 (960)
39 1wa5_C Importin alpha RE-expor 99.8 2.8E-14 9.4E-19 156.4 46.3 555 12-574 88-783 (960)
40 2vgl_A Adaptor protein complex 99.8 6.5E-16 2.2E-20 159.1 29.6 471 11-502 76-587 (621)
41 2x1g_F Cadmus; transport prote 99.7 1.2E-13 4.1E-18 152.0 43.5 564 10-581 123-857 (971)
42 2x1g_F Cadmus; transport prote 99.7 1.3E-13 4.4E-18 151.8 43.1 535 20-561 51-742 (971)
43 2x19_B Importin-13; nuclear tr 99.7 2E-12 6.8E-17 142.5 51.1 555 21-583 115-847 (963)
44 2x19_B Importin-13; nuclear tr 99.7 1.5E-12 5.1E-17 143.5 48.9 565 7-585 22-717 (963)
45 3ltj_A Alpharep-4; protein eng 99.7 9.2E-16 3.1E-20 135.3 18.5 188 357-584 13-200 (201)
46 2qk2_A LP04448P; mini spindles 99.7 1.8E-15 6E-20 137.5 19.4 185 397-586 15-209 (242)
47 3ltm_A Alpha-REP4; protein eng 99.7 1.3E-15 4.5E-20 135.4 17.8 186 358-583 19-204 (211)
48 2qk2_A LP04448P; mini spindles 99.7 2E-15 7E-20 137.1 19.0 190 237-430 11-209 (242)
49 3ltm_A Alpha-REP4; protein eng 99.7 4.4E-15 1.5E-19 132.0 18.4 187 319-545 19-205 (211)
50 3opb_A SWI5-dependent HO expre 99.6 3.9E-13 1.3E-17 136.3 33.2 478 96-584 180-730 (778)
51 3ibv_A Exportin-T; karyopherin 99.6 1E-11 3.4E-16 134.2 45.2 523 22-548 56-735 (980)
52 3ltj_A Alpharep-4; protein eng 99.6 1.8E-14 6.3E-19 126.9 19.8 183 201-423 13-195 (201)
53 3l6x_A Catenin delta-1; cateni 99.6 9.4E-13 3.2E-17 131.7 33.4 344 239-582 46-476 (584)
54 4ady_A RPN2, 26S proteasome re 99.6 6.8E-12 2.3E-16 130.0 39.4 330 217-581 373-718 (963)
55 4ady_A RPN2, 26S proteasome re 99.6 9.5E-11 3.2E-15 121.6 46.7 272 280-581 392-675 (963)
56 4hxt_A De novo protein OR329; 99.6 2.9E-13 9.8E-18 124.1 24.2 226 360-585 4-244 (252)
57 3m1i_C Exportin-1; heat repeat 99.6 1.8E-11 6.3E-16 135.3 42.4 490 84-585 15-621 (1049)
58 1xm9_A Plakophilin 1; armadill 99.6 4.8E-13 1.6E-17 133.3 26.1 147 435-581 282-448 (457)
59 3m1i_C Exportin-1; heat repeat 99.6 5.1E-11 1.7E-15 131.8 42.6 508 8-546 15-621 (1049)
60 4db8_A Armadillo-repeat protei 99.6 1.8E-13 6E-18 125.5 18.9 223 360-582 14-251 (252)
61 3l6x_A Catenin delta-1; cateni 99.5 1.6E-11 5.6E-16 122.8 32.4 341 204-544 50-477 (584)
62 3ibv_A Exportin-T; karyopherin 99.5 4E-11 1.4E-15 129.5 37.9 491 85-585 6-631 (980)
63 3opb_A SWI5-dependent HO expre 99.5 8.1E-11 2.8E-15 119.6 36.6 483 11-504 170-728 (778)
64 4hxt_A De novo protein OR329; 99.5 2.1E-12 7.2E-17 118.3 23.1 188 359-546 45-244 (252)
65 2qk1_A Protein STU2; STU2P, XM 99.5 9.7E-13 3.3E-17 118.7 20.0 190 359-548 17-225 (249)
66 1xm9_A Plakophilin 1; armadill 99.5 6.7E-12 2.3E-16 125.0 27.8 148 397-544 283-450 (457)
67 4db8_A Armadillo-repeat protei 99.5 1.9E-12 6.6E-17 118.5 20.5 225 279-503 11-250 (252)
68 2qk1_A Protein STU2; STU2P, XM 99.5 7.7E-13 2.6E-17 119.4 17.3 194 242-435 17-229 (249)
69 3nmz_A APC variant protein; pr 99.5 4.1E-11 1.4E-15 117.2 28.9 307 239-545 68-452 (458)
70 4hat_C Exportin-1; heat repeat 99.5 5.3E-09 1.8E-13 113.2 47.5 556 23-582 114-833 (1023)
71 4hat_C Exportin-1; heat repeat 99.4 1.9E-09 6.3E-14 116.7 40.9 508 10-548 17-623 (1023)
72 4db6_A Armadillo repeat protei 99.4 9.4E-12 3.2E-16 110.3 18.9 187 396-582 11-209 (210)
73 3nmz_A APC variant protein; pr 99.4 5.6E-11 1.9E-15 116.3 25.7 303 280-582 70-450 (458)
74 1lrv_A LRV, leucine-rich repea 99.4 5.5E-14 1.9E-18 124.4 1.6 187 169-461 56-242 (244)
75 1lrv_A LRV, leucine-rich repea 99.4 1.7E-13 5.7E-18 121.4 3.1 186 287-578 57-242 (244)
76 2iw3_A Elongation factor 3A; a 99.4 1.7E-10 6E-15 121.3 25.4 281 297-585 31-327 (986)
77 2iw3_A Elongation factor 3A; a 99.3 3.2E-09 1.1E-13 111.9 32.7 256 240-504 53-324 (986)
78 4db6_A Armadillo repeat protei 99.3 1.4E-10 4.7E-15 102.8 18.6 184 360-543 14-209 (210)
79 2db0_A 253AA long hypothetical 99.3 7.9E-09 2.7E-13 82.9 24.6 215 357-582 31-246 (253)
80 3nmw_A APC variant protein; AR 99.2 2E-09 7E-14 102.0 23.4 216 332-547 97-338 (354)
81 3nmw_A APC variant protein; AR 99.2 1.2E-09 4E-14 103.6 20.6 213 371-583 97-335 (354)
82 4ffb_C Protein STU2; tubulin f 99.2 2.3E-10 7.7E-15 105.9 14.3 182 402-586 14-216 (278)
83 3a6p_A Exportin-5; exportin-5, 99.2 1.1E-07 3.9E-12 105.6 37.9 487 87-584 13-659 (1204)
84 3gjx_A Exportin-1; transport, 99.2 7.5E-07 2.6E-11 96.1 41.4 490 10-510 29-650 (1073)
85 2of3_A ZYG-9; multifunctional 99.2 4E-09 1.4E-13 93.6 19.9 176 405-586 54-240 (266)
86 3gjx_A Exportin-1; transport, 99.1 1.1E-06 3.8E-11 94.8 42.1 480 58-548 39-649 (1073)
87 3a6p_A Exportin-5; exportin-5, 99.1 4.4E-07 1.5E-11 101.0 40.1 508 8-525 10-682 (1204)
88 3b2a_A TON_1937, putative unch 99.1 1.3E-08 4.4E-13 85.7 19.8 223 358-585 33-264 (265)
89 1xqr_A HSPBP1 protein; armadil 99.1 4.9E-09 1.7E-13 96.6 19.1 171 413-583 56-239 (296)
90 3oc3_A Helicase MOT1, MOT1; re 99.1 2.1E-09 7.1E-14 102.2 15.7 256 164-461 175-432 (800)
91 3tjz_B Coatomer subunit gamma; 99.1 1.9E-09 6.5E-14 100.7 15.5 286 239-541 66-351 (355)
92 3tjz_B Coatomer subunit gamma; 99.1 4.4E-09 1.5E-13 98.3 17.5 291 154-461 59-349 (355)
93 2of3_A ZYG-9; multifunctional 99.1 2.6E-08 8.8E-13 88.5 20.9 179 366-550 54-243 (266)
94 1xqr_A HSPBP1 protein; armadil 99.1 2.5E-08 8.6E-13 91.8 21.6 172 373-544 55-239 (296)
95 2db0_A 253AA long hypothetical 99.0 1.1E-07 3.6E-12 76.5 21.3 216 161-386 30-245 (253)
96 1te4_A Conserved protein MTH18 99.0 3.1E-11 1.1E-15 97.4 0.5 122 434-580 10-131 (131)
97 3oc3_A Helicase MOT1, MOT1; re 99.0 2.4E-08 8.2E-13 95.1 16.8 256 10-305 175-432 (800)
98 4ffb_C Protein STU2; tubulin f 98.9 1.8E-08 6.2E-13 93.0 15.7 183 324-509 14-217 (278)
99 3b2a_A TON_1937, putative unch 98.9 1.5E-07 5.2E-12 79.3 19.1 184 162-349 32-219 (265)
100 3l9t_A Putative uncharacterize 98.9 1.5E-08 5E-13 86.6 11.7 139 200-349 69-208 (240)
101 1te4_A Conserved protein MTH18 98.8 1.3E-09 4.5E-14 87.8 3.4 118 319-461 12-129 (131)
102 3l9t_A Putative uncharacterize 98.7 1.4E-07 4.7E-12 80.7 12.9 136 398-544 72-208 (240)
103 1vsy_5 Proteasome activator BL 98.7 7.2E-06 2.5E-10 87.9 29.1 564 11-583 135-967 (997)
104 1vsy_5 Proteasome activator BL 98.7 1.3E-06 4.5E-11 93.5 22.3 387 155-547 500-970 (997)
105 3u0r_A Apoptosis inhibitor 5; 98.3 0.00024 8.1E-09 67.4 22.7 257 176-445 41-317 (507)
106 3grl_A General vesicular trans 98.2 0.00056 1.9E-08 68.2 25.4 326 160-504 18-394 (651)
107 3u0r_A Apoptosis inhibitor 5; 98.2 0.0004 1.4E-08 65.9 21.5 255 139-404 42-315 (507)
108 3tt9_A Plakophilin-2; cell adh 98.0 0.00013 4.4E-09 64.0 14.9 144 438-581 10-179 (233)
109 3tt9_A Plakophilin-2; cell adh 98.0 0.00055 1.9E-08 60.0 18.5 185 399-583 10-230 (233)
110 3grl_A General vesicular trans 98.0 0.0049 1.7E-07 61.5 25.9 224 358-581 122-393 (651)
111 4gmo_A Putative uncharacterize 97.8 0.046 1.6E-06 57.0 38.3 190 395-584 418-667 (684)
112 1lsh_A Lipovitellin (LV-1N, LV 97.3 0.033 1.1E-06 61.1 23.2 158 253-430 407-580 (1056)
113 1lsh_A Lipovitellin (LV-1N, LV 97.3 0.012 4.1E-07 64.5 19.6 160 396-568 390-581 (1056)
114 3o2t_A Symplekin; heat repeat, 97.2 0.16 5.4E-06 47.8 24.0 113 158-272 58-185 (386)
115 3gs3_A Symplekin, LD45768P; he 96.9 0.19 6.5E-06 44.4 23.4 128 373-503 30-172 (257)
116 3o2t_A Symplekin; heat repeat, 96.9 0.3 1E-05 45.9 24.2 183 374-561 41-272 (386)
117 3gs3_A Symplekin, LD45768P; he 96.8 0.24 8.3E-06 43.7 23.6 114 157-272 47-175 (257)
118 4gmo_A Putative uncharacterize 96.7 0.0089 3.1E-07 62.4 11.3 106 440-545 80-216 (684)
119 4atg_A TAF6; transcription, TF 96.0 0.44 1.5E-05 39.8 15.4 140 373-523 23-177 (196)
120 3ldz_A STAM-1, signal transduc 93.4 0.33 1.1E-05 38.4 8.0 72 477-548 44-119 (140)
121 1upk_A MO25 protein; transfera 93.4 4.6 0.00016 36.8 23.7 126 440-565 168-313 (341)
122 3g2s_A C-terminal fragment of 92.4 1 3.5E-05 35.9 9.5 69 480-548 53-131 (149)
123 1mhq_A ADP-ribosylation factor 92.4 3.2 0.00011 33.0 12.4 73 476-548 39-121 (148)
124 2b6c_A Hypothetical protein EF 92.3 2.1 7.1E-05 37.0 12.2 131 205-349 58-189 (220)
125 3jxy_A Alkylpurine DNA glycosy 92.0 5.7 0.00019 34.5 17.6 158 205-383 64-223 (232)
126 1upk_A MO25 protein; transfera 91.8 7.4 0.00025 35.5 22.4 184 396-581 77-282 (341)
127 2b6c_A Hypothetical protein EF 90.4 3.7 0.00013 35.4 11.9 132 400-545 58-190 (220)
128 1juq_A ADP-ribosylation factor 90.2 4 0.00014 33.4 11.2 87 474-560 49-145 (171)
129 3jxy_A Alkylpurine DNA glycosy 90.1 3.3 0.00011 36.1 11.4 60 206-269 135-194 (232)
130 1x5b_A Signal transducing adap 90.0 1.3 4.4E-05 36.0 8.0 69 480-548 57-130 (163)
131 4atg_A TAF6; transcription, TF 89.7 8.1 0.00028 32.3 12.8 144 413-563 24-178 (196)
132 3zyq_A Hepatocyte growth facto 88.1 2.6 9E-05 36.4 9.2 73 476-548 46-123 (226)
133 1elk_A Target of MYB1; superhe 87.8 4.6 0.00016 32.5 9.8 74 474-547 52-134 (157)
134 3g2s_A C-terminal fragment of 87.0 10 0.00034 30.1 12.4 96 407-508 25-130 (149)
135 3ldz_A STAM-1, signal transduc 86.6 10 0.00035 29.8 11.7 74 203-276 43-120 (140)
136 3ut4_A CTHE_2751, putative unc 86.4 3.9 0.00013 31.5 8.0 26 476-501 32-57 (134)
137 2npp_B PP2A, B subunit, serine 85.4 27 0.00092 33.5 19.2 250 251-504 127-399 (449)
138 1mhq_A ADP-ribosylation factor 84.2 14 0.00048 29.3 12.6 96 407-508 15-120 (148)
139 2fv2_A RCD1 required for cell 83.7 21 0.00073 31.0 16.2 157 11-192 5-174 (268)
140 1x5b_A Signal transducing adap 83.7 16 0.00054 29.5 12.0 75 201-275 51-130 (163)
141 3dad_A FH1/FH2 domain-containi 81.6 31 0.0011 31.5 15.2 97 448-544 130-232 (339)
142 1juq_A ADP-ribosylation factor 80.9 21 0.00073 29.0 12.4 73 397-469 50-132 (171)
143 3zyq_A Hepatocyte growth facto 80.7 18 0.00063 31.1 11.1 96 407-508 22-122 (226)
144 3dad_A FH1/FH2 domain-containi 78.6 40 0.0014 30.8 16.3 111 438-548 162-291 (339)
145 1vdy_A Hypothetical protein (R 76.9 13 0.00046 28.9 8.0 69 512-581 47-129 (140)
146 3fga_B Serine/threonine-protei 72.5 66 0.0022 30.4 21.3 94 488-582 264-366 (403)
147 3ebb_A Phospholipase A2-activa 71.8 58 0.002 29.5 15.5 107 476-582 148-263 (304)
148 3ut4_A CTHE_2751, putative unc 70.8 21 0.00072 27.5 7.6 79 318-409 30-108 (134)
149 2fv2_A RCD1 required for cell 70.1 40 0.0014 29.3 10.0 109 437-545 102-226 (268)
150 1w9c_A CRM1 protein, exportin 69.0 68 0.0023 29.1 18.6 155 413-567 45-229 (321)
151 3rru_A TOM1L1 protein; structu 68.5 23 0.00079 28.1 7.8 75 474-548 52-135 (152)
152 2npp_B PP2A, B subunit, serine 67.9 88 0.003 30.0 21.4 27 320-346 163-189 (449)
153 1vdy_A Hypothetical protein (R 67.6 39 0.0013 26.3 8.7 64 402-466 16-79 (140)
154 1dvp_A HRS, hepatocyte growth 67.3 58 0.002 27.7 11.8 69 474-542 41-114 (220)
155 3bwt_A Protein PUF4; pumilio, 67.1 74 0.0025 29.2 12.5 7 520-526 276-282 (333)
156 3gvo_A Pumilio 2, pumilio homo 64.3 91 0.0031 28.9 14.1 47 513-562 297-343 (351)
157 1vsy_4 Proteasome activator BL 60.6 1.7E+02 0.0058 30.8 23.1 106 281-386 340-454 (799)
158 3vld_A DNA mismatch repair pro 58.5 1.4E+02 0.0046 29.0 12.6 144 396-545 72-227 (500)
159 1ho8_A Vacuolar ATP synthase s 54.8 1.6E+02 0.0054 28.6 26.0 26 439-464 450-475 (480)
160 1elk_A Target of MYB1; superhe 52.2 88 0.003 24.9 12.1 74 202-275 53-135 (157)
161 1t06_A Hypothetical protein; s 51.9 38 0.0013 29.3 7.0 71 474-544 107-181 (235)
162 1t06_A Hypothetical protein; s 51.8 44 0.0015 28.9 7.4 70 164-233 109-182 (235)
163 1dvp_A HRS, hepatocyte growth 51.8 1.1E+02 0.0038 26.0 11.9 74 202-275 42-120 (220)
164 3l3f_X Protein DOA1, DOA1/UFD3 47.4 18 0.00063 33.5 4.4 98 485-582 209-326 (362)
165 3k49_A MRNA-binding protein PU 46.9 92 0.0031 29.1 9.4 20 430-449 218-237 (369)
166 1sz9_A PCF11 protein; RNA poly 45.8 1.1E+02 0.0036 24.0 10.1 71 474-544 42-115 (144)
167 1w9c_A CRM1 protein, exportin 44.1 1.9E+02 0.0063 26.3 26.8 60 408-468 133-199 (321)
168 2jak_A Serine/threonine-protei 42.9 2.2E+02 0.0074 26.8 15.5 44 531-574 313-359 (392)
169 3gae_A Protein DOA1; UFD3, CDC 40.5 64 0.0022 28.2 6.7 97 486-582 101-217 (253)
170 3fga_B Serine/threonine-protei 39.1 2.5E+02 0.0086 26.4 25.2 208 251-460 94-317 (403)
171 2i9c_A Hypothetical protein RP 38.9 28 0.00095 26.3 3.4 57 518-582 61-117 (123)
172 3pst_A Protein DOA1; protein d 36.1 1.7E+02 0.0059 27.7 9.1 98 485-582 272-389 (425)
173 4flb_A Regulation of nuclear P 36.0 1.4E+02 0.0049 22.7 8.4 92 442-542 14-111 (132)
174 1ho8_A Vacuolar ATP synthase s 34.4 3.3E+02 0.011 26.4 26.0 27 555-581 449-475 (480)
175 3k49_A MRNA-binding protein PU 29.8 3.4E+02 0.012 25.1 12.0 14 318-331 63-76 (369)
176 1sz9_A PCF11 protein; RNA poly 25.9 2.3E+02 0.008 22.0 11.9 69 357-425 42-113 (144)
177 2jak_A Serine/threonine-protei 25.5 4.2E+02 0.014 24.8 17.2 175 89-265 177-362 (392)
178 3rru_A TOM1L1 protein; structu 24.6 2.6E+02 0.0088 22.0 9.3 73 162-234 52-133 (152)
179 3eg5_B Protein diaphanous homo 24.2 4.4E+02 0.015 24.6 12.5 58 488-545 133-193 (383)
180 4fu3_A Regulation of nuclear P 23.2 1.3E+02 0.0044 23.0 5.1 125 433-567 4-134 (135)
181 4flb_A Regulation of nuclear P 22.6 2.5E+02 0.0087 21.2 8.8 95 477-578 10-108 (132)
182 1vsy_4 Proteasome activator BL 22.3 6.9E+02 0.024 26.2 26.9 114 160-273 336-458 (799)
183 3gvo_A Pumilio 2, pumilio homo 21.6 4.7E+02 0.016 23.9 17.3 10 372-381 230-239 (351)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=5.4e-64 Score=525.08 Aligned_cols=579 Identities=59% Similarity=0.962 Sum_probs=542.6
Q ss_pred CCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcc
Q 007842 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (587)
Q Consensus 3 ~~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~ 82 (587)
++||+++|+..|++.++|+|+++|..|++.+++++..+|++..+++++|++.+..++++++|..+++.++.+...+|+..
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 57899999999999999999999999999999999999999999999999998778888999999999999998888878
Q ss_pred hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHH
Q 007842 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 162 (587)
+...+++.|..+..++++.||+.|..++..++..++++.+.+.++|++..+.+++++..|..++.+++.++++.++..+.
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999999999999999999999999999988888899999999999989999999999999999999888889
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (587)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (587)
.+++.+..+++|+++.||..++++++.++...+.+.+.+.++|.+..+++|+++.||..++.+++.++..++++...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998877777889999999999999999999999999999998887777889
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HHHH
Q 007842 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ 318 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~ 318 (587)
+|.+..+++|++|.||..++++++.++..++++.....++|.+..+++|+++.||..++.+++.++..++.+ .+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999999999999999999999999988766555679999999999999999999999999999988765 5678
Q ss_pred hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 398 (587)
.++|.+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+...++.+.+.+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999998887777889999999999999999999999999999988877767889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 478 (587)
+|.+..+++|++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||.+|+.+++.++..+|.++..+.++|
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999999999888889999
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHH
Q 007842 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 558 (587)
Q Consensus 479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l 558 (587)
.+..+..++++.+|.+++.+++.++..+|.+.+.+.++|.+.+.++|++++||..++++++.+...++.+...+.+.|.+
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l 563 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999999998887778899999
Q ss_pred HHhcCCCCccHHHHHHHHHHHHH
Q 007842 559 VELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 559 ~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.++.+|+|++||..|..|++.+.
T Consensus 564 ~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 564 EKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.2e-48 Score=408.88 Aligned_cols=529 Identities=21% Similarity=0.290 Sum_probs=476.7
Q ss_pred hccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh
Q 007842 55 ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA 134 (587)
Q Consensus 55 ~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 134 (587)
...+++.++|..+++.++.++...|.......++|.|.... ++++.||..+..+++.+...++.......++|.+..+.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~ 96 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLA 96 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHT
T ss_pred HhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 34467789999999999887766665455677889887766 77889999999999998887766666778999998888
Q ss_pred cCCCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhC
Q 007842 135 AGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD 213 (587)
Q Consensus 135 ~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d 213 (587)
.+++..+|..++..++.+....+++ ....++|.+..+.+++++.+|..++..++.++...+ +...+.++|.+..+++|
T Consensus 97 ~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-~~~~~~l~~~l~~l~~d 175 (588)
T 1b3u_A 97 TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSD 175 (588)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHHHHHHHHHTC
T ss_pred hCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhCC
Confidence 8888899999999999999888765 566789999999999999999999999999988775 34567899999999999
Q ss_pred CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh
Q 007842 214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE 293 (587)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~ 293 (587)
+++.||..+++.++.++..++++...+.++|.+..+++|+++.||..++.+++.++..++++.....++|.+..+++|++
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~ 255 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS 255 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999998887677889999999999999999999999999999988765555678999999999999
Q ss_pred HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh----HHHHhHHHHHHHhhcC
Q 007842 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKD 369 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d 369 (587)
|.||..++.+++.++...+++.+.+.++|.+.++++|+++.||..++.+++.++..++.+ .+.+.++|.+..+++|
T Consensus 256 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d 335 (588)
T 1b3u_A 256 WRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD 335 (588)
T ss_dssp HHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC
Confidence 999999999999999998888777889999999999999999999999999999888765 5678899999999999
Q ss_pred CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCc
Q 007842 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV 449 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 449 (587)
.++.||..++.+++.++..+|.+...+.++|.+..+++|+++.+|..++.+++.+...++.+.+.+.++|.+...+.|++
T Consensus 336 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~ 415 (588)
T 1b3u_A 336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415 (588)
T ss_dssp SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887666788999999999999999999999999999988887777889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChh
Q 007842 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPN 529 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~ 529 (587)
|.+|..++.+++.+...+|.+++.+.++|.+...+.|+++.+|..++.+++.++..+|.+++.+.++|.+..+.+|+++.
T Consensus 416 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~ 495 (588)
T 1b3u_A 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYL 495 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHH
T ss_pred chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999998877778999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 530 IKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 530 vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
+|..++.+++.++..++.+.+...++|.+.+++.|++++||..+..+++.+.+.+|
T Consensus 496 ~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 496 HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999999998888888999999999999999999999999999987655
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4.5e-36 Score=325.75 Aligned_cols=568 Identities=18% Similarity=0.146 Sum_probs=441.1
Q ss_pred HHHhcCccHHHHHHHhhcHHHHHHh----hChHhhhhhhhhhhhhc-cCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842 15 IDELKNDDIQLRLNSIRRLSTIARA----LGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (587)
Q Consensus 15 ~~~l~s~~~~~R~~a~~~l~~~~~~----~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (587)
+..+.+.+..+|..|+..++..... ++ +..+..+.+.+.+. .+.++.+|..++.+++.++..- ....++.+++
T Consensus 54 l~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~-~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~ 131 (852)
T 4fdd_A 54 LTKLKSEDEPTRSLSGLILKNNVKAHFQNFP-NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLP 131 (852)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHTTTSGGGCC-HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHH
T ss_pred HhccCCCChHHHHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHH
Confidence 3333556677777777666643221 11 12223333433332 3566789999999999887643 2456788999
Q ss_pred HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhH-------HhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH---
Q 007842 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 159 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--- 159 (587)
.+.+.+.++++.+|+.++.+++.+++..++..- .+.++|.+.++..+++..+|..|+..++.+....+..
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~ 211 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999999999999998765421 3457777777778888889999999998777665543
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-- 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-- 235 (587)
....+++.+..+++|+++.||..++.+++.++...+. ..+.+.+++.+....+|.++.||..+++.+..+++....
T Consensus 212 ~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 3457888888999999999999999999999987543 234456788888888999999999999999998764211
Q ss_pred --hhhhhchHHHHHHhc-----------cC-----------CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 007842 236 --QDCVAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~-----------~d-----------~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d 291 (587)
......++|.+...+ .| .+|.+|..++.+++.++...|+. ....++|.+...++|
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFH 370 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcC
Confidence 123446777776665 34 57889999999999999988754 345688999999999
Q ss_pred ChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHh
Q 007842 292 NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSL 366 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~ 366 (587)
++|.+|.+++.+++.+++..+.. .+.+.++|.+...+.|+++.||.+++.+++.++...+. ..+...++|.+...
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999876543 35578899999999999999999999999999886643 34567888999999
Q ss_pred hcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----hHHHHHHH
Q 007842 367 LKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGAL 440 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~ 440 (587)
+.|.++.||..++.+++.+++..+.. .+.+.+++.+...+++.+......++++++.++...|... +.+.++|.
T Consensus 451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~ 530 (852)
T 4fdd_A 451 ILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPP 530 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHH
Confidence 99999999999999999999877654 3456777888888777777777778899999988776433 56777887
Q ss_pred HH---HhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhcc-----------------CCchhHHHHHHHH
Q 007842 441 CM---QWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMIN-----------------NPHYLYRMTILRA 498 (587)
Q Consensus 441 l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-----------------d~~~~~R~~a~~~ 498 (587)
+. ..+.|.+..+| .++.+++.++..+|..+ +.+.+++.+...+. .++..+|..++.+
T Consensus 531 l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~ 609 (852)
T 4fdd_A 531 LIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDL 609 (852)
T ss_dssp HHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHH
T ss_pred HHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHH
Confidence 77 45677778886 78999999999888754 23445554433322 2356799999999
Q ss_pred HHHhhcccChHHH--H--hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHH
Q 007842 499 ISLLAPVMGSEIT--C--SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFF 572 (587)
Q Consensus 499 l~~l~~~~~~~~~--~--~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~ 572 (587)
++.++..+|.+.. . ..+++.+..+++|+++.||..+..+++.++..++.. .+...++|.+.+.+++.++.||..
T Consensus 610 l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 610 LSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN 689 (852)
T ss_dssp HHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHH
Confidence 9999998886532 2 578999999999999999999999999999887764 456779999999888888999999
Q ss_pred HHHHHHHHHHhhcc
Q 007842 573 ATQAIQSIDHVMMS 586 (587)
Q Consensus 573 a~~al~~l~~~~~~ 586 (587)
|+.+++.++..+|.
T Consensus 690 a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 690 ATWAIGEISIQMGI 703 (852)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhH
Confidence 99999999887764
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.1e-35 Score=322.61 Aligned_cols=569 Identities=14% Similarity=0.159 Sum_probs=445.8
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCc-------ch
Q 007842 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGV-------EH 83 (587)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~-------~~ 83 (587)
..+++.+.++++.+|..++..++.++...+ ...|.+++|.+.+.+ +.+..++..+..+++.+.+..+.. ..
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~-~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGE-LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTT-TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 567777889999999999999999988764 456889999998855 446677877777777765433211 12
Q ss_pred HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh--HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---
Q 007842 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--- 158 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--- 158 (587)
...++|.+.+++.++++.||..|+.++..+....+... ....+++.+..+..+++..+|..++..++.++...++
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 56688888888889999999999999998776544321 1235667777777888888999999999887765543
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhc----cchhhhHHHHHHHHhh-----------hC----------
Q 007842 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE----PAHLKTDIMSIFEDLT-----------QD---------- 213 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~l~-----------~d---------- 213 (587)
.+...+++.+..++.|.++.||..+++.+..+++... -+.+.+.++|.+...+ .|
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 2567789999999999999999999999988875311 0234556777776655 33
Q ss_pred -CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcC
Q 007842 214 -DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLR 290 (587)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~ 290 (587)
..+.+|..+..+++.++...++ ...+.++|.+...++|++|.+|..++.+++.++...++. .....++|.+..+++
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence 3457899999999999988874 466789999999999999999999999999998755431 123568999999999
Q ss_pred CChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHH
Q 007842 291 DNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLS 365 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~ 365 (587)
|+++.||.+++.+++.++...+. ..+...+++.+.+.+.|+++.||..++.++..+++..+.. .+.+.+++.+..
T Consensus 411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490 (852)
T ss_dssp CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH
Confidence 99999999999999999987643 2455788899999999999999999999999998776653 356788888888
Q ss_pred hhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHH---HhcCCChHHHHHHHHHHHHHHHhhChhhh--HHH
Q 007842 366 LLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDK 436 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~---~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~ 436 (587)
.+++........++.+++.++...|.. .+.+.++|.+.+ .+.|.++.+| .++++++.++..+|..+. .+.
T Consensus 491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~ 569 (852)
T 4fdd_A 491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEP 569 (852)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHH
Confidence 888777777777888888888766643 356778888774 4567777776 789999999999886432 233
Q ss_pred HHHHHHHhc-----------------CCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHhhccCCchhHHHHH
Q 007842 437 LGALCMQWL-----------------QDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTI 495 (587)
Q Consensus 437 l~~~l~~~l-----------------~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~~R~~a 495 (587)
+.+.+...+ ..++..+|..++.+++.+++.+|.++. ...+++.+...+.|+++.+|+.+
T Consensus 570 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a 649 (852)
T 4fdd_A 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence 333333332 123677999999999999999987642 25789999999999999999999
Q ss_pred HHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCC--ccH
Q 007842 496 LRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPD--VDV 569 (587)
Q Consensus 496 ~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d--~~V 569 (587)
..+++.++..++... +.+.++|.+.+.+.+..+.+|.+++++++.++..++.+ .+...+++.|..++++++ ..+
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~ 729 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTL 729 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchH
Confidence 999999998877643 45779999999999889999999999999999888654 566788888888777764 479
Q ss_pred HHHHHHHHHHHHHh
Q 007842 570 RFFATQAIQSIDHV 583 (587)
Q Consensus 570 r~~a~~al~~l~~~ 583 (587)
+.+|+.++++++..
T Consensus 730 ~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 730 LENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2.5e-35 Score=332.23 Aligned_cols=573 Identities=12% Similarity=0.150 Sum_probs=452.2
Q ss_pred ccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhC---hHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchH
Q 007842 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHA 84 (587)
Q Consensus 9 ~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~---~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~ 84 (587)
+.+..+++.+.|.|++.|.+|...+......-. .+...+.+++.+.+.+ +.++++|..++.+++.++..++. .+.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 558899999999999999999988876432110 1122346677666644 66789999999999998876653 567
Q ss_pred hhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh--------hHHhhHHHHHHHHhc-CCCCcchhhHHhhhHhhcCC
Q 007842 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPS 155 (587)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~ 155 (587)
..+++.+...+.++++.+|..|..+++.++..+++. ...+.++|.+..... +++..+|..++..++.+...
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 788888888888999999999999999999988865 257789999988887 46778888899888877643
Q ss_pred CC---hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhh-hCCchhHHHHHHHHHHHHhh
Q 007842 156 AP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGK 231 (587)
Q Consensus 156 ~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~ 231 (587)
.+ ..+...+++.+...+.++++.||..++.+++.++...+++. .+.+++.+...+ ++.++.+|..++++++.++.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 22 23678899999999999999999999999999998876543 344555544444 34345788899999999998
Q ss_pred hcChh--hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC-----------------
Q 007842 232 LLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLR----------------- 290 (587)
Q Consensus 232 ~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~----------------- 290 (587)
..++. .+.+.++|.+.+.++|+++.+|..++.+++.++..++++. ....++|.+.+.+.
T Consensus 244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 77652 2457799999999999999999999999999999877653 23456666665542
Q ss_pred --------------------CChHHHHHHHHHhHHHHHhhhCH--HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 007842 291 --------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (587)
Q Consensus 291 --------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
|..|.+|.+++.++..++...+. ..+.+.++|.+...+.|.++.||.+++.++..+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 12367899999999999987664 46668889999988999999999999998887765
Q ss_pred ccch---------------------hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--hhHHhhHHHHHHHH
Q 007842 349 LLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVEL 405 (587)
Q Consensus 349 ~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~ 405 (587)
..+. ..+.+.++|.+.+.++|+++.+|..++.+++.++...+. ..+.+.++|.+.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHH
Confidence 4321 234566788888889999999999999999998876542 23457889999999
Q ss_pred hcCCCh--HHHHHHHHHHHHHHHhhChhhh---HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---------HH
Q 007842 406 AEDRHW--RVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------EW 471 (587)
Q Consensus 406 ~~~~~~--~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~ 471 (587)
++|+++ .+|..++..+..+....+++.+ .+.++|.++..+.|+++.||..++.+++.+++.+|. ..
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 999876 8999999999999887777653 445788889999999999999999999999998876 13
Q ss_pred HhhhhHHHHHhhc--cCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh--
Q 007842 472 AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-- 545 (587)
Q Consensus 472 ~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-- 545 (587)
+.+.++|.+...+ .|++..+|.+++.+++.++...|... +.+.+++.+...+.+ +..|..++++++.++...
T Consensus 564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~ 641 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLK 641 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccc
Confidence 5678899988888 77889999999999999998877653 357778888777764 458999999999988643
Q ss_pred -chHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 546 -DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 546 -~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
....+...++|.+...+.|.++.+|.++..+++.+....+
T Consensus 642 ~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 642 IDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 2356778999999999999999999999999999988665
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2e-34 Score=314.94 Aligned_cols=574 Identities=15% Similarity=0.166 Sum_probs=453.2
Q ss_pred HHHHHHHhcCc-cHHHHHHHhhcHHHHHHhhChH-----hhhhhhhhhhhhcc-CC--cHHHHHHHHHHhccccccCCCc
Q 007842 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGGV 81 (587)
Q Consensus 11 ~~~l~~~l~s~-~~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~l~~~~~~~ 81 (587)
+..|++.+.++ ++..|..++..+..++...+++ ...+.++|.+...+ +. +.++|..+.++++.+..+++..
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889998 9999999999999998877654 23456777776644 33 6789999999998876554321
Q ss_pred ----chHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcC
Q 007842 82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (587)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (587)
.....+++.+...+.++++.+|..++.++..++...+.. .+.+.+++++.....+.+..+|..++..+..+..
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 123457788888888999999999999999998876532 2222566777677777778888888887766554
Q ss_pred CC-----------------C---hHHHHHHHHHHHHhcCC-------CChHHHHHHHHhHHHHHHhhccchhhhHHHHHH
Q 007842 155 SA-----------------P---DILKTELRSIYTQLCQD-------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (587)
Q Consensus 155 ~~-----------------~---~~~~~~l~~~l~~l~~d-------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 207 (587)
.. + ......++|.+...+.+ +++.+|..+..+++.++..++ +...+.+++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l 374 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFV 374 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHH
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHH
Confidence 31 1 12346778887776653 457899999999999999886 55667889999
Q ss_pred HHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC----ccccc
Q 007842 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD 280 (587)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ 280 (587)
...+++.++.+|.+++.+++.+++..+++ ...+.++|.+...+.|+++.||..++.+++.++..+++. .....
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 99999999999999999999999876632 235568888999999999999999999999999987642 23457
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH------HHHHHhHhHHHHHhcc--CCcHHHHHHHHHHHHccccccch
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK 352 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
++|.+...++|+ +.||..++.++..+++.+++ ..+.+.+++.+.+.+. |.++.+|..++.+++.++...+.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 889999999887 99999999999999987651 1455778888888887 45589999999999999887765
Q ss_pred h--HHHHhHHHHHHHhhcC---------------CChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCCh-H
Q 007842 353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R 412 (587)
Q Consensus 353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~-~ 412 (587)
+ .+...++|.+...+.+ ....+|..++.++..++..+|.. .+.+.++|.+...+++.++ .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 3 2455677777666542 24568889999999999888764 3456788888888888877 8
Q ss_pred HHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc
Q 007842 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH 488 (587)
Q Consensus 413 vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~ 488 (587)
+|..++.+++.++...|.++ +.+.++|.+...++++++.+|..++.+++.++...|..+ +...++|.+.+.+.+++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 99999999999998887543 457789999999999999999999999999999887653 45678888888888765
Q ss_pred --hhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCC-----------hhHHHHHHHHHHHhhhhhch--H---
Q 007842 489 --YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ--S--- 548 (587)
Q Consensus 489 --~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~-----------~~vR~~~~~~l~~l~~~~~~--~--- 548 (587)
..+|..++.+++.++..+|..+ +.+.++|.+.+.++... ..+|..+++++..++..++. .
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~ 773 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8899999999999999887654 46788999888876421 57999999999999988762 2
Q ss_pred HHHhhHHHHHHHhcCCC----CccHHHHHHHHHHHHHHhh-cc
Q 007842 549 MVEKTIRPCLVELTEDP----DVDVRFFATQAIQSIDHVM-MS 586 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~d~----d~~Vr~~a~~al~~l~~~~-~~ 586 (587)
.+...+++.+...+.|. ++.||..|..+++.+++.+ |+
T Consensus 774 ~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 774 PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 35566777777777774 8899999999999999988 54
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.5e-34 Score=314.13 Aligned_cols=572 Identities=12% Similarity=0.105 Sum_probs=450.0
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccC-C-cHHHHHHHHHHhccccccCCC-----cchH
Q 007842 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-D-DDEVLLAMAEELGVFIPYVGG-----VEHA 84 (587)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~-~~~v~~~~~~~l~~l~~~~~~-----~~~~ 84 (587)
+.+++.+.++++..|..+...++.++...+|...|++++|.+.+... + ++.+|..+..+++.+....+. ..+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 57888899999999999999999999888776678899999988654 3 667888888888777654432 2366
Q ss_pred hhhHHHHhhhhcch--hhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh
Q 007842 85 HVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (587)
Q Consensus 85 ~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~ 158 (587)
..+++.+...+.++ ++.||..|+.++..+...+.. ......+++.+.....++++..|..++..+..+....++
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887 789999999999997654432 122356788888888888888999998888776654332
Q ss_pred ---HHHH-HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-------------------chhhhHHHHHHHHhhhC--
Q 007842 159 ---ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSIFEDLTQD-- 213 (587)
Q Consensus 159 ---~~~~-~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~l~~d-- 213 (587)
.+.. .+++.+...+.|.++.+|..+++.+..++..... ..+...++|.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2444 7888888899999999999999999998876411 11235567776665542
Q ss_pred -----CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc---cccchHHHH
Q 007842 214 -----DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY 285 (587)
Q Consensus 214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l 285 (587)
+++.+|..+...+..++..++.. ..+.+++.+.+.+++++|.+|..++.+++.++...+++. ....++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34689999999999999888743 567889999999999999999999999999885443111 123578888
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhhCH----HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch------hHH
Q 007842 286 VRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DAT 355 (587)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~ 355 (587)
...++|+++.||..++.+++.++..++. ..+.+.++|.+...+.|+ +.||..++.++..++..++. ..+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 9999999999999999999999987754 345678899999888886 99999999999988876541 245
Q ss_pred HHhHHHHHHHhhcC--CChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcC---------------CChHHHHH
Q 007842 356 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED---------------RHWRVRLA 416 (587)
Q Consensus 356 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~---------------~~~~vR~~ 416 (587)
.+.+++.+...+.+ .++.+|..++.+++.++...+.+ .+...++|.+.+.+.+ ....+|..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 67788888888874 44789999999999999887754 2334566666655432 24568889
Q ss_pred HHHHHHHHHHhhChh--hhHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhH
Q 007842 417 IIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLY 491 (587)
Q Consensus 417 ~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~ 491 (587)
++.+++.++..+|.. .+.+.+++.+...+++.+. .+|..++.+++.++...|.++ +.+.++|.+...++++++.+
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence 999999999988764 3457788888888888877 899999999999999888764 45779999999888899999
Q ss_pred HHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCC--hhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCC
Q 007842 492 RMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP 565 (587)
Q Consensus 492 R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~ 565 (587)
|..++.+++.++..+|... +...++|.+.+.+++++ +.+|..++.+++.++...+.. .+.+.++|.+.+.....
T Consensus 656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK 735 (861)
T ss_dssp HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998887643 46788898999888765 899999999999999988765 45678888888865532
Q ss_pred ------C-----ccHHHHHHHHHHHHHHhhc
Q 007842 566 ------D-----VDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 566 ------d-----~~Vr~~a~~al~~l~~~~~ 585 (587)
| ..+|..+..++..+.+.+|
T Consensus 736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 4689999999999887765
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.8e-34 Score=325.27 Aligned_cols=569 Identities=14% Similarity=0.191 Sum_probs=446.0
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCc--------
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGV-------- 81 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~-------- 81 (587)
+..+++.+.++++.+|..|+..++.++...++ .....+++.+...+ ++++.+|..++.+++.++..++..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 56788999999999999999999999887776 45567888887754 667789999999999888766643
Q ss_pred chHhhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh
Q 007842 82 EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (587)
Q Consensus 82 ~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~ 158 (587)
.+.+.++|.+...+. ++++.+|..|+.++..++...+.. .....+++.+.....++...+|..++..++.+....++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 267889999888887 588999999999999998765431 12345666666677777778999999999998887765
Q ss_pred HHHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh
Q 007842 159 ILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.....+++.+...+. +.++.+|..++++++.++...+.. .+.+.++|.+...++|+++.+|..+...++.++..++.
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 544455555554433 334578999999999999887642 34577899999999999999999999999999988765
Q ss_pred h--hhhhchHHHHHHhcc-------------------------------------CCcHHHHHHHHHHHHHHHHHhCC--
Q 007842 236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP-- 274 (587)
Q Consensus 236 ~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vR~~a~~~l~~~~~~~~~-- 274 (587)
+ .+.+.++|.+.+.+. |..|.+|..++.+++.++...++
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 3 245666666655432 23588999999999999986553
Q ss_pred CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---------------------HHHHHhHhHHHHHhccCCcH
Q 007842 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQ 333 (587)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~i~~~l~~~~~d~~~ 333 (587)
......++|.+...++|.++.||..++.++..+....+. ..+.+.++|.+.+.+.|++|
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 223456788898889999999999999999988876542 23456777888888999999
Q ss_pred HHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCCh--HHHHHHHHhhhhhhhhhchhh---HHhhHHHHHHHHh
Q 007842 334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA 406 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~~ 406 (587)
.+|.+++.+++.+....+. ..+.+.++|.+...++|.++ .+|..++..+..+....+.+. +.+.++|.+...+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 9999999999988776542 23577899999999999865 899999999999988777653 4577899999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhhCh---------hhhHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHhChHH--Hh
Q 007842 407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEW--AM 473 (587)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~ 473 (587)
+|++|++|..++..++.+++.+|. ..+.+.++|.++..+ .|.+..||..|+.+++.++...|..+ ..
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 999999999999999999988876 235677899999888 78899999999999999999888764 23
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhccc---ChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 550 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~ 550 (587)
..+++.+.+.+.+ ...|..++.+++.++... +...+...++|.+...+.+.+..+|.+++.+++.++...+....
T Consensus 609 ~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~ 686 (1230)
T 1u6g_C 609 PNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT 686 (1230)
T ss_dssp HHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC
Confidence 5666666666654 348999999999988643 22456789999999999999999999999999999988765433
Q ss_pred HhhHHHHHHH---hcCCCCccHHHHHHHHHHHHHH
Q 007842 551 EKTIRPCLVE---LTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 551 ~~~i~~~l~~---l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.+.+.|.+.. +++|.|.+++..+..+|..+.+
T Consensus 687 ~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 687 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 3456666654 4678899999888888888764
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=5.5e-33 Score=304.17 Aligned_cols=571 Identities=16% Similarity=0.165 Sum_probs=413.8
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CC--cHHHHHHHHHHhccccccCCC---cchHhh
Q 007842 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGG---VEHAHV 86 (587)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~l~~~~~~---~~~~~~ 86 (587)
.+++.+.++++.. ..++..++.++...++...+++++|.+.+.+ +. ++.+|..+..+++.+....++ ..+...
T Consensus 94 ~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (876)
T 1qgr_A 94 YVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (876)
T ss_dssp HHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence 4777888887777 8888888888888777677888999888754 44 567888888888877654432 235566
Q ss_pred hHHHHhhhhcch--hhHHHHHHHHHHHHHHhhcChh----hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh--
Q 007842 87 LLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-- 158 (587)
Q Consensus 87 l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-- 158 (587)
+++.+.+.+.++ ++.+|..|+.++..++..++.. .....+++.+.....+++..+|..++..+..+....++
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 777777777766 5789999999999877654322 12234677777777777777888888877766554332
Q ss_pred -HHHH-HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhc------------------c--c---hhhhHHHHHHHHhhh-
Q 007842 159 -ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE------------------P--A---HLKTDIMSIFEDLTQ- 212 (587)
Q Consensus 159 -~~~~-~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~------------------~--~---~~~~~l~~~l~~l~~- 212 (587)
.+.. .+++.+.....+.++.||..+++.+..++.... . . ...+.++|.+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (876)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence 2344 778888888888888999998888888776531 0 0 012445665555543
Q ss_pred ------CCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHH
Q 007842 213 ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVP 283 (587)
Q Consensus 213 ------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~ 283 (587)
|+++.+|.++..++..++..++.. ..+.++|.+...++|++|.+|..++.+++.++...+++ .....++|
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~ 411 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345788999999999888877743 56678888888888899999999999998887654421 12235788
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhhCH----HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--------
Q 007842 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-------- 351 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-------- 351 (587)
.+...++|+++.||..++.+++.++..++. ..+.+.+++.+...+.|+ +.||..++.++..++...+
T Consensus 412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 888888998899999999999998887654 245577888888888775 8889888888888776543
Q ss_pred --------hhHHHHhHHHHHHHhhcCC---ChHHHHHH------------------------------------------
Q 007842 352 --------KDATIEQLLPIFLSLLKDE---FPDVRLNI------------------------------------------ 378 (587)
Q Consensus 352 --------~~~~~~~l~~~l~~~l~d~---~~~vr~~a------------------------------------------ 378 (587)
-..+.+.++|.+...+.+. +..+|..+
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS 570 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1234566777777766543 23444444
Q ss_pred --------------HHhhhhhhhhhc-hh--hHHhhHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhh--hHHHH
Q 007842 379 --------------ISKLDQVNQVIG-ID--LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKL 437 (587)
Q Consensus 379 --------------~~~l~~l~~~~~-~~--~~~~~~l~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~--~~~~l 437 (587)
+.++..++..+| .. .+.+.++|.+...+++.+ +.+|..++.+++.++...|..+ +.+.+
T Consensus 571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444444 21 223456677777777654 6899999999999998776533 45678
Q ss_pred HHHHHHhcCCC-chHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccC--CchhHHHHHHHHHHHhhcccChHH--
Q 007842 438 GALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI-- 510 (587)
Q Consensus 438 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~~~~~~~-- 510 (587)
+|.+...+.+. ++.||..|+.+++.++...|..+ +.+.+++.+.+.+.+ .+..+|..++.+++.++..+|.++
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~ 730 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence 89999999887 89999999999999999887643 347788888888776 467899999999999998777653
Q ss_pred HHhhHHHHHHhhcCCCC-----------hhHHHHHHHHHHHhhhhhch------------HHHHhhHHHHHHHhcCCC--
Q 007842 511 TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ------------SMVEKTIRPCLVELTEDP-- 565 (587)
Q Consensus 511 ~~~~il~~l~~~l~d~~-----------~~vR~~~~~~l~~l~~~~~~------------~~~~~~i~~~l~~l~~d~-- 565 (587)
+.+.++|.+.+.++++. ..+|..+++++..++..++. ..+...+++.+..+..|+
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 810 (876)
T 1qgr_A 731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDH 810 (876)
T ss_dssp GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46778888888776542 38999999999988876543 134566777777776777
Q ss_pred CccHHHHHHHHHHHHHHhhcc
Q 007842 566 DVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 566 d~~Vr~~a~~al~~l~~~~~~ 586 (587)
+..||..|..+++.+.+..|.
T Consensus 811 ~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 811 TDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHhCc
Confidence 679999999999999988764
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=8e-32 Score=294.92 Aligned_cols=574 Identities=14% Similarity=0.156 Sum_probs=425.0
Q ss_pred HHHHHHHhcCc--cHHHHHHHhhcHHHHHHhhChHh---hhhhhhhhhhhccC-C--cHHHHHHHHHHhccccccCCCc-
Q 007842 11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSENND-D--DDEVLLAMAEELGVFIPYVGGV- 81 (587)
Q Consensus 11 ~~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~---~~~~l~p~l~~~~~-~--~~~v~~~~~~~l~~l~~~~~~~- 81 (587)
+..|++.+.++ ++..|..+++.+..++...+++. ..+.++|.+.+.+. + +.++|..+.++++.++.+++..
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889998 99999999999999987766532 23456676666443 3 4689999999998877655421
Q ss_pred ---chHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCC
Q 007842 82 ---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (587)
Q Consensus 82 ---~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 155 (587)
.....+++.+...+.++++.+|..++.++..++...+.. .+...+++++.....+++..+|..++..+..+...
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 111346777777778889999999999999998765532 22226777777777777777788877666554321
Q ss_pred C---------------------C---hHHHHHHHHHHHHhcC-------CCChHHHHHHHHhHHHHHHhhccchhhhHHH
Q 007842 156 A---------------------P---DILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIM 204 (587)
Q Consensus 156 ~---------------------~---~~~~~~l~~~l~~l~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 204 (587)
. . ......+++.+...+. ++++.+|.++..+++.++...+ +...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l 368 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHHHHH
Confidence 0 0 1133567777776654 4568899999999999999886 45667888
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC----cc
Q 007842 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT 277 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~ 277 (587)
+.+...++|.++.+|.+++.+++.++...+++ ...+.++|.+...++|+++.||..++.+++.++..+++. ..
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 99988999999999999999999999877632 245668899999999999999999999999999987642 23
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC----------------HHHHHHhHhHHHHHhccCC---c------
Q 007842 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---S------ 332 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~i~~~l~~~~~d~---~------ 332 (587)
...+++.+...+.|. +.||..++.++..++...+ -..+.+.++|.+...+.+. +
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 446788888888886 8899999999998887653 1134466677666655442 1
Q ss_pred --------------------------------------------------HHHHHHHHHHHHccccccc-hh--HHHHhH
Q 007842 333 --------------------------------------------------QHVRSALASVIMGMAPLLG-KD--ATIEQL 359 (587)
Q Consensus 333 --------------------------------------------------~~vr~~a~~~l~~l~~~~~-~~--~~~~~l 359 (587)
+.+|..++.++..++..+| .. .+.+.+
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 2334455555555555555 22 235567
Q ss_pred HHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh--
Q 007842 360 LPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF-- 432 (587)
Q Consensus 360 ~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~-- 432 (587)
+|.+...+++.. ..+|..++.+++.++...|.. .+.+.++|.+...+.+. ++.+|..++.+++.++...|...
T Consensus 608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 687 (876)
T 1qgr_A 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788888888764 479999999999998877653 34467788888888876 89999999999999998887432
Q ss_pred hHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc-----------hhHHHHHHH
Q 007842 433 FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH-----------YLYRMTILR 497 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~-----------~~~R~~a~~ 497 (587)
+.+.+++.+...+.+ .+..+|..++.+++.++...|.++ +.+.++|.+...+.++. ..+|..++.
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~ 767 (876)
T 1qgr_A 688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767 (876)
T ss_dssp HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence 346778888888876 467899999999999999888774 34667777777665432 279999999
Q ss_pred HHHHhhcccCh------------HHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhch-H--HH-HhhHHHHHH
Q 007842 498 AISLLAPVMGS------------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S--MV-EKTIRPCLV 559 (587)
Q Consensus 498 ~l~~l~~~~~~------------~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~-~--~~-~~~i~~~l~ 559 (587)
++..+...+|. ..+.+.+++.+.....|+ +..+|..++.+|+.++..++. . .+ .+.+++.+.
T Consensus 768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll 847 (876)
T 1qgr_A 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELL 847 (876)
T ss_dssp HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHH
Confidence 99888765442 113456667776666777 789999999999999998877 3 23 345666666
Q ss_pred H-hcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 560 E-LTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 560 ~-l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
. .+.|+++.||..|+.|++.++++-.+
T Consensus 848 ~~~l~~~~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 848 TEGRRSKTNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHHhhcC
Confidence 6 78899999999999999999987544
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.95 E-value=1.1e-24 Score=224.84 Aligned_cols=504 Identities=14% Similarity=0.155 Sum_probs=358.7
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchHhhhH
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~ 88 (587)
.+.++.+.|++++...|..++..+-.+ ...|.+. ..+.+.+.+.. +++.++++.+.-.+..+++ ..++....+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--~~~e~~~l~~ 88 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAK--SQPDMAIMAV 88 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHH--HSHHHHHTTH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--cCchHHHHHH
Confidence 578999999999999999998888754 5567543 23444444433 4556777776666666544 1234445556
Q ss_pred HHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHH
Q 007842 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (587)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 168 (587)
+.+.+-+.++|+.+|..|+.+++.+. . ++....+.+.+
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~---~---------------------------------------~~~~~~l~~~l 126 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR---V---------------------------------------DKITEYLCEPL 126 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC---S---------------------------------------GGGHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC---h---------------------------------------HHHHHHHHHHH
Confidence 67777778888888888877776653 1 22344556677
Q ss_pred HHhcCCCChHHHHHHHHhHHHHHHhhccchhh-hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHH
Q 007842 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILP 244 (587)
Q Consensus 169 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~ 244 (587)
..++.|+++.||+.|+.+++.+.... ++... ..+++.+..+++|+++.|+..|+.++..++..-+.. ......++
T Consensus 127 ~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 127 RKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence 78888999999999999999998854 23222 358889999999999999999999999988754321 01122344
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh--CHH---HHHH
Q 007842 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--NPE---LAIQ 318 (587)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~~ 318 (587)
.+.+.+.+.++..+...++.++.++ +.+ .....+++.+..++++.++.|+..|+.++..+...+ +++ ....
T Consensus 206 ~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~ 282 (591)
T 2vgl_B 206 KLLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK 282 (591)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH
T ss_pred HHHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 4445555667777777777665543 111 122468888888999999999999999999887543 111 2234
Q ss_pred hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 398 (587)
.+.+.+..+. ++++.+|..++.++..+....+. .+.+.+- .+.....| +..||..+++.+..++..-. .+.+
T Consensus 283 ~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~-~~~~~~~d-~~~Ir~~al~~L~~l~~~~n----v~~i 354 (591)
T 2vgl_B 283 KLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIK-VFFVKYND-PIYVKLEKLDIMIRLASQAN----IAQV 354 (591)
T ss_dssp HTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTT-TTSCCTTS-CHHHHHHHHHHHHHTCCSST----HHHH
T ss_pred HHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHH-hheeccCC-hHHHHHHHHHHHHHHCChhh----HHHH
Confidence 5566666655 47889999999999988754332 1111111 12222344 48999999999888764322 3567
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 478 (587)
++.+.+++.+.++.+|..++..++.++..++. ..+.+++.+..++.+....|+..++.++..+.+..... .+.+++
T Consensus 355 v~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~ 430 (591)
T 2vgl_B 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIA 430 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHH
Confidence 88888899999999999999999999877542 24668889999999999999999999999998765542 356778
Q ss_pred HHHhhcc-CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHH
Q 007842 479 QVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC 557 (587)
Q Consensus 479 ~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~ 557 (587)
.+.+.+. ..++.+|.++++++|..+...... ..++..+.+.+.+.++.||..++.++.++....+... ...+...
T Consensus 431 ~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~l 506 (591)
T 2vgl_B 431 TLCENLDSLDEPDARAAMIWIVGEYAERIDNA---DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQV 506 (591)
T ss_dssp HHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHcccccccCH---HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHH
Confidence 8877776 456889999999999998876542 5677777877888899999999999999998765432 2345555
Q ss_pred HHHhcCC-CCccHHHHHHHHHHHH
Q 007842 558 LVELTED-PDVDVRFFATQAIQSI 580 (587)
Q Consensus 558 l~~l~~d-~d~~Vr~~a~~al~~l 580 (587)
+..+..| .|.+||..|...+.-+
T Consensus 507 l~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 507 LSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHhhhcCCChHHHHHHHHHHHHH
Confidence 5555566 6789999999877655
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=1.5e-23 Score=211.93 Aligned_cols=382 Identities=14% Similarity=0.135 Sum_probs=290.9
Q ss_pred hcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhC--CchhHHHHHHHHHHHHhhh---------------c
Q 007842 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DQDSVRLLAVEGCAALGKL---------------L 233 (587)
Q Consensus 171 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~---------------~ 233 (587)
.+.++++.+|+.|-+.|..+...- .+.+...+...+.+ .++.+|..|+..|..+... +
T Consensus 9 ~~~s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 9 KTVSPDRLELEAAQKFLERAAVEN-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 355778899999999988865421 12233333333333 3678999999988887532 2
Q ss_pred ChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHhhh
Q 007842 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~ 311 (587)
+++ ....+...+...+.++++.+ ..++.+++.++....+......++|.+...+.++ ++.+|..++.+++.+++..
T Consensus 84 ~~~-~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (462)
T 1ibr_B 84 DAN-ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (462)
T ss_dssp CHH-HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CHH-HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence 222 34456666777778888888 8899999999987654334678999999999888 8999999999999998865
Q ss_pred CH---HHHHHhHhHHHHHhccCC--cHHHHHHHHHHHHccccccchh----HHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 007842 312 NP---ELAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (587)
Q Consensus 312 ~~---~~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (587)
.. ..+.+.+++.+...+.|+ ++.||..++++++.+...+... ...+.+++.+...+.+.++++|..+++++
T Consensus 162 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l 241 (462)
T 1ibr_B 162 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241 (462)
T ss_dssp CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 32 234467888888888888 7999999999998876554321 12345678888888899999999999999
Q ss_pred hhhhhhhchh--hHHh-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-------------------C-hhh---hHHH
Q 007842 383 DQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---FDDK 436 (587)
Q Consensus 383 ~~l~~~~~~~--~~~~-~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-------------------~-~~~---~~~~ 436 (587)
..+....+.. .+.. .+++.+...+.+.+..+|..+++.+..++... . ... +.+.
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp HHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 9998766532 2335 77888888888999999999999998887652 0 111 2356
Q ss_pred HHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH
Q 007842 437 LGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509 (587)
Q Consensus 437 l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~ 509 (587)
++|.++..+. |.+|.+|.+|..+++.++..+|. .....++|.+...+++++|.+|.+++.+++.++...+.+
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence 7888887774 34689999999999999999884 456788899999999999999999999999999865532
Q ss_pred ---HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHH
Q 007842 510 ---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVE 560 (587)
Q Consensus 510 ---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~ 560 (587)
...+.++|.+...++|+++.||.+++.+|+.++..+++. .+...++|.|.+
T Consensus 401 ~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 235789999999999999999999999999999887763 344555555544
No 13
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=2.1e-23 Score=214.57 Aligned_cols=475 Identities=15% Similarity=0.079 Sum_probs=307.5
Q ss_pred hccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhH
Q 007842 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH 150 (587)
Q Consensus 71 l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~ 150 (587)
+++|.++.++.++....+|.|..++.++++.+|..|..+|..++..-+... .+.
T Consensus 2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~---~~~----------------------- 55 (529)
T 1jdh_A 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIM----------------------- 55 (529)
T ss_dssp CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH---HHH-----------------------
T ss_pred hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHH---HHH-----------------------
Confidence 467788888877777888999899999999999999999999985432110 000
Q ss_pred hhcCCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHH
Q 007842 151 IAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 227 (587)
Q Consensus 151 ~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~ 227 (587)
.....++.+..++. ++++.+|..++.+|..++..-.. .......+|.+..+++++++.++..++.+|.
T Consensus 56 ---------~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 56 ---------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126 (529)
T ss_dssp ---------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ---------hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00123333333332 34677777777777776543111 1122346677777788888888888888888
Q ss_pred HHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-HHHHHHH
Q 007842 228 ALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-AEVRIAA 300 (587)
Q Consensus 228 ~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a 300 (587)
.++..-+. .......+|.+.+++.++++.+|..++.++..++..-. ........++.+..++++.+ ...+..+
T Consensus 127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a 206 (529)
T 1jdh_A 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206 (529)
T ss_dssp HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence 88765332 11235578888888888888898888888887764100 00112346777777776544 4566667
Q ss_pred HHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHH
Q 007842 301 AGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNI 378 (587)
Q Consensus 301 ~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (587)
..++..++..-... ......++.+..++.+.+..++..++.++..++...+.......++|.+.+++.+.++++|..+
T Consensus 207 ~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 286 (529)
T 1jdh_A 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA 286 (529)
T ss_dssp HHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 77777776532221 2224578888888888899999999999988876543332334678889999999999999999
Q ss_pred HHhhhhhhhhhc--hh-hHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhCh------hhhHHHHHHHHHHhcCC
Q 007842 379 ISKLDQVNQVIG--ID-LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQD 447 (587)
Q Consensus 379 ~~~l~~l~~~~~--~~-~~~~~~l~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d 447 (587)
+.+|..++..-. .. ......+|.+.+++.+ .++.+|..++.+++.++...+. .......+|.+..++.+
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~ 366 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc
Confidence 999998876321 11 1223457777777754 4478999999988888643221 11122347788888888
Q ss_pred Cc-hHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHH----------------------h
Q 007842 448 KV-YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPHYLYRMTILRAISL----------------------L 502 (587)
Q Consensus 448 ~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~----------------------l 502 (587)
+. +.+|..++.+++++..... ..+....++|.+.+++.++++.+|..+++++++ +
T Consensus 367 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L 446 (529)
T 1jdh_A 367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446 (529)
T ss_dssp TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence 76 6899999999988874211 112335678888888887777777765554443 3
Q ss_pred hcccCh--HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh--chHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842 503 APVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 578 (587)
Q Consensus 503 ~~~~~~--~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~--~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~ 578 (587)
+..... .......+|.+..++.|+++++|..++.++.++...- .........++.|..+..|++++||..|..+|.
T Consensus 447 ~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526 (529)
T ss_dssp TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHH
Confidence 321110 0123456789999999999999999999999987431 111223456789999999999999999999998
Q ss_pred HH
Q 007842 579 SI 580 (587)
Q Consensus 579 ~l 580 (587)
.+
T Consensus 527 ~l 528 (529)
T 1jdh_A 527 RM 528 (529)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.92 E-value=1.2e-20 Score=195.02 Aligned_cols=570 Identities=12% Similarity=0.072 Sum_probs=392.5
Q ss_pred HHHHHHhcC-ccHHHHHHHhhcHHHHHHhhChHhhhh---hh-hhhhhhcc-CCcHHHHHHHHHHhccc----cc----c
Q 007842 12 AVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRK---EL-IPFLSENN-DDDDEVLLAMAEELGVF----IP----Y 77 (587)
Q Consensus 12 ~~l~~~l~s-~~~~~R~~a~~~l~~~~~~~~~~~~~~---~l-~p~l~~~~-~~~~~v~~~~~~~l~~l----~~----~ 77 (587)
..|.+.+++ .|.+....|++.+..++.. ..+++.. ++ +|.+.+.+ .+++++-.+....+..+ .. .
T Consensus 52 ~~~~~l~~~~~~~~~~~~~~r~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (810)
T 3now_A 52 AKVASLTKVEKDQDIYVNMVHLVAALCEN-SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKP 130 (810)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhc-cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445555666 7899999999999998753 2233332 11 45555533 24444434443333322 21 1
Q ss_pred CCCcc---------hHhhhHHHHhhhhcchh--hHHHHHHHHHHHHHHhhcChh---hH-HhhHHHHHHHHhcC-C----
Q 007842 78 VGGVE---------HAHVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMRES---DL-VDWYIPLVKRLAAG-E---- 137 (587)
Q Consensus 78 ~~~~~---------~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~---~~-~~~l~~~l~~l~~~-~---- 137 (587)
..+++ ....++..|..++.+.. ...|+.++..+.+...+-..+ .+ ...-+.-+...+.. +
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~ 210 (810)
T 3now_A 131 DSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKY 210 (810)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCC
T ss_pred ccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccc
Confidence 11111 22344555555555553 579999999888876443221 11 11122222233322 1
Q ss_pred ------CCcchhhHHhhhHhhcCCCC-----hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc---hh-hhH
Q 007842 138 ------WFTARVSACGLFHIAYPSAP-----DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HL-KTD 202 (587)
Q Consensus 138 ------~~~~r~~a~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~-~~~ 202 (587)
....|..+.-++..+++... +.+.+.+-.++...+..++..-+..++.++..++....+. .+ .+.
T Consensus 211 ~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G 290 (810)
T 3now_A 211 ESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREG 290 (810)
T ss_dssp SSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTT
T ss_pred cccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccc
Confidence 24678888888889988776 2355556667777777777777777788888877653221 12 345
Q ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC----Cc-
Q 007842 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EP- 276 (587)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~----~~- 276 (587)
.+|.+..++..+++.++..|+.+++.++..-.. ....+.-.|.+..++.+++..+|..|+.+|.+++...+. ..
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence 788889999999999999999999987765221 122223348999999888899999999999888753321 11
Q ss_pred ---cccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHhhhCHH-HHH--HhHhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 007842 277 ---TRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE-LAI--QHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (587)
Q Consensus 277 ---~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~-~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
....+++.+.+++.++ ++++|..|+.+|..++..-... .+. ..++|.+..++++++..++..++.++++++.
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 1235788899998887 8899999999999997643221 121 3578889999888889999999999999986
Q ss_pred ccc-----------------------------------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh-
Q 007842 349 LLG-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID- 392 (587)
Q Consensus 349 ~~~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 392 (587)
... ......-.+|.+..++++.++.+|..++++|..++..-...
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~ 530 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG 530 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 321 00112246899999999999999999999999998542211
Q ss_pred -hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-----HHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Q 007842 393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLAE 465 (587)
Q Consensus 393 -~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 465 (587)
......+|.+..++.+.+...|..++.++..++....++.. ....+|.+..++..+ +...+..|+.+|.+++.
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 22346789999999999999999999999998865443321 123678888888754 44456688899998875
Q ss_pred Hh---ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh-HHHH--hhHHHHHHhhcCCCChhHHHHHHHHHH
Q 007842 466 EF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC--SRLLPVVINASKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 466 ~~---~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~-~~~~--~~il~~l~~~l~d~~~~vR~~~~~~l~ 539 (587)
.- .........+|.+..++.+++..+|..|++++++++..-.. ..+. ...++.++.++..++..+|..++.+|+
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 31 11123345789999999999999999999999999863211 1122 357899999999999999999999999
Q ss_pred Hhhhhhch--H-HHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 540 SLIPIVDQ--S-MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 540 ~l~~~~~~--~-~~~-~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.+...... . .+. ...+|.|..++.+.+.++|..|..++..+..
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 99874222 2 233 4688999999999999999999999998864
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=4.2e-23 Score=208.61 Aligned_cols=336 Identities=15% Similarity=0.173 Sum_probs=219.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCC--chhHHHHHHHHHHHHhh
Q 007842 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGK 231 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~ 231 (587)
..++++.+..+...+...+.++++.+ ..++.+++.++....+...++.++|.+...++++ ++.+|..++.+++.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 34666777888888888888888889 9999999999988655445688999998888888 88999999999999988
Q ss_pred hcCh---hhhhhchHHHHHHhccCC--cHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHHHHHH
Q 007842 232 LLEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAG 302 (587)
Q Consensus 232 ~~~~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 302 (587)
...+ ....+.+++.+...++|+ ++.||..++++++.+...++. ......+++.+...+.+.++.+|..+++
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~ 239 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6633 224456888888888888 799999999999886543221 1112335777777888889999999999
Q ss_pred hHHHHHhhhCHH--HHHH-hHhHHHHHhccCCcHHHHHHHHHHHHccccccc--------------------h---hHHH
Q 007842 303 KVTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------------------K---DATI 356 (587)
Q Consensus 303 ~l~~l~~~~~~~--~~~~-~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------------------~---~~~~ 356 (587)
++..++...+.. .+.+ .+++.+...+.|.++.+|..+++.+..++.... . ..+.
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (462)
T 1ibr_B 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL 319 (462)
T ss_dssp HHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh
Confidence 999998876542 3345 778888888889999999999988877764310 0 0012
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHH
Q 007842 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 436 (587)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 436 (587)
..++|.+...+.+.+.+ ..+.+|.+|.++..+++.++..+| +...+.
T Consensus 320 ~~l~p~l~~~l~~~d~d--------------------------------~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~ 366 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDEN--------------------------------DDDDDWNPCKAAGVCLMLLATCCE-DDIVPH 366 (462)
T ss_dssp HHHHHHHHHHTTCCCSS--------------------------------CCTTCCSHHHHHHHHHHHHHHHTT-TTHHHH
T ss_pred hhccHHHHHHHHhcccc--------------------------------cccccchHHHHHHHHHHHHHHhcc-HHHHHH
Confidence 33344443333211000 024455555555555555555555 233445
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----H
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----E 509 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~----~ 509 (587)
++|.+...+.|++|.+|.+|+.+++.++.....+ .....++|.+...++|+++.+|.+|+.+++.++..++. .
T Consensus 367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~ 446 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCST
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 5555555555555556665555555555433211 13345556666666666666666666666666554433 2
Q ss_pred HHHhhHHHHHHhhc
Q 007842 510 ITCSRLLPVVINAS 523 (587)
Q Consensus 510 ~~~~~il~~l~~~l 523 (587)
.+.+.++|.++..+
T Consensus 447 ~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 447 VYLAPLLQCLIEGL 460 (462)
T ss_dssp TTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555544
No 16
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.8e-22 Score=210.05 Aligned_cols=474 Identities=15% Similarity=0.092 Sum_probs=322.3
Q ss_pred ccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc
Q 007842 74 FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (587)
Q Consensus 74 l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~ 153 (587)
|..+.++.......+|.|..++.++++.+|..|+.+|..++........ + .
T Consensus 2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~---i--------------------------~ 52 (644)
T 2z6h_A 2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA---I--------------------------M 52 (644)
T ss_dssp ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHH---H--------------------------T
T ss_pred cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHH---H--------------------------H
Confidence 3444555555566788888888899999999999999999875432110 0 0
Q ss_pred CCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842 154 PSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
.....++.+...+. ++++.+|..++.+|..++..-.. .......+|.+..+++++++.+|..++.+|..++
T Consensus 53 ------~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 53 ------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp ------TCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ------hccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 00123333444433 34677777777777766543211 1122346777888888888888888888888887
Q ss_pred hhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCh-HHHHHHHHHh
Q 007842 231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE-AEVRIAAAGK 303 (587)
Q Consensus 231 ~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~ 303 (587)
..... .......+|.+.+++.+++++++..++.+|..++...++ .......++.++.++++.+ ..++..++.+
T Consensus 127 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~ 206 (644)
T 2z6h_A 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 206 (644)
T ss_dssp HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHH
Confidence 65432 112356788888888888889999888888887742110 1112356788888887654 6678888888
Q ss_pred HHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 007842 304 VTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (587)
Q Consensus 304 l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (587)
|..++..-... ......++.+..++.+.+..++..++.++..++...........++|.+..++.+.++++|..++.+
T Consensus 207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a 286 (644)
T 2z6h_A 207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 286 (644)
T ss_dssp HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88887533222 2223578888999999999999999999999886543333344678999999999999999999999
Q ss_pred hhhhhhhhch--h-hHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHhhChh------hhHHHHHHHHHHhcCCCc-
Q 007842 382 LDQVNQVIGI--D-LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKV- 449 (587)
Q Consensus 382 l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~- 449 (587)
|..++..-.. . ......+|.+..++.+. .+.+|..++.+++.++...+.. ......+|.+..++.++.
T Consensus 287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~ 366 (644)
T 2z6h_A 287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence 9998763211 1 12234678888877653 3799999999999886432211 122346788889998875
Q ss_pred hHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhccCCc----------------------hhHHHHHHHHHHHhhcc
Q 007842 450 YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPH----------------------YLYRMTILRAISLLAPV 505 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~----------------------~~~R~~a~~~l~~l~~~ 505 (587)
+.+|..|+.+++++...-. .......++|.+.+++.+.+ ..++..++.++..++..
T Consensus 367 ~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 7999999999999874211 11234567788877776543 34566777777777653
Q ss_pred cChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 506 MGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 506 ~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
..... .....+|.+.+++.++++++|..++.+|.++...-... ......++.|.+++.+++++||..|..+|..+.
T Consensus 447 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 447 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 21111 13567899999999999999999999999987531111 222346788999999999999999999999887
Q ss_pred H
Q 007842 582 H 582 (587)
Q Consensus 582 ~ 582 (587)
+
T Consensus 527 ~ 527 (644)
T 2z6h_A 527 E 527 (644)
T ss_dssp T
T ss_pred c
Confidence 6
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=4.4e-22 Score=211.48 Aligned_cols=489 Identities=14% Similarity=0.072 Sum_probs=340.1
Q ss_pred HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--H--HHHHH
Q 007842 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELR 165 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~ 165 (587)
.+...+.+++..+|..+...+..... ..+....+|.+..++.+++..+|..|+..++.++...... . ...++
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 33444456677888888777765422 1233556777777777777788888888888777643211 1 13567
Q ss_pred HHHHHhcC-CCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhh
Q 007842 166 SIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCV 239 (587)
Q Consensus 166 ~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~ 239 (587)
+.+..++. +.++.+|..++.+|..++..-.. .......++.+..++++.++.+|..|+.+|..++...+.. ...
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 77776665 45899999999999997654211 1223457888999999999999999999999998764331 123
Q ss_pred hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChH-HHHHHHHHhHHHHHhhhCHH-
Q 007842 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNPE- 314 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~- 314 (587)
...++.+..++.++++.++..++.++..++.... ........++.++.++++.+. ..+..++.++..++..-...
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 354 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence 5688999999999999999999999987763110 011223567888888887654 45567778888777532222
Q ss_pred -HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh-
Q 007842 315 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID- 392 (587)
Q Consensus 315 -~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 392 (587)
.....+++.+..++.+.+..++..++.++..++...........++|.+..++.+.++.+|..++.+|..++..-...
T Consensus 355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~ 434 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434 (780)
T ss_dssp HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 223456889999999999999999999999887655432233568899999999999999999999999987642111
Q ss_pred --hHHhhHHHHHHHHhcC-CCh-HHHHHHHHHHHHHHHhhCh------hhhHHHHHHHHHHhcCCCc-hHHHHHHHHHHH
Q 007842 393 --LLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQDKV-YSIRDAAANNLK 461 (587)
Q Consensus 393 --~~~~~~l~~l~~~~~~-~~~-~vR~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~ 461 (587)
......+|.+.+++.+ .++ .+|..++.+++.++...+. .......+|.+..++.+++ +.+|..|+.+|+
T Consensus 435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~ 514 (780)
T 2z6g_A 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514 (780)
T ss_dssp HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 1123467788887765 344 8999999999988642221 1112235788888888776 499999999999
Q ss_pred HHHHHhC--hHHHhhhhHHHHHhhccCCc----------------------hhHHHHHHHHHHHhhcccChH--HHHhhH
Q 007842 462 RLAEEFG--PEWAMQHITPQVLEMINNPH----------------------YLYRMTILRAISLLAPVMGSE--ITCSRL 515 (587)
Q Consensus 462 ~l~~~~~--~~~~~~~l~~~l~~~l~d~~----------------------~~~R~~a~~~l~~l~~~~~~~--~~~~~i 515 (587)
++..... .......++|.+.+++.+.+ ..++..++.+|+.++...... ......
T Consensus 515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~ 594 (780)
T 2z6g_A 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT 594 (780)
T ss_dssp HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCc
Confidence 9974111 11223456777777766543 346677888888876421111 123557
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 516 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+|.+..++.++++++|..++.+|.++...-... ......++.|.+++.+++++||..|..||..+..
T Consensus 595 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 899999999999999999999999987431111 2233467889999999999999999999999875
No 18
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.92 E-value=4.2e-21 Score=198.31 Aligned_cols=570 Identities=15% Similarity=0.127 Sum_probs=397.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhh---------ChHhh-----hh---hhhhhhhh-ccC--CcHHHHHHHHHH
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARAL---------GEERT-----RK---ELIPFLSE-NND--DDDEVLLAMAEE 70 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~---------~~~~~-----~~---~l~p~l~~-~~~--~~~~v~~~~~~~ 70 (587)
+..+..-|.+++.+.-.++...+..+-..+ ||+.. .. .++-.|.. ..+ -+...|..+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~ 173 (810)
T 3now_A 94 VPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIEL 173 (810)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHH
Confidence 456778888888877777766666543222 11111 11 22222222 222 234567776666
Q ss_pred hccccccCCC--cchHh---hhHHHHhhhhcch----------hhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHH
Q 007842 71 LGVFIPYVGG--VEHAH---VLLPPLETLCTVE----------ETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVK 131 (587)
Q Consensus 71 l~~l~~~~~~--~~~~~---~l~~~l~~l~~~~----------~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~ 131 (587)
+-+.+++-.. ..... -+..+|.-..+.+ .++.|..+.-++.++.+.+.. +.+.+.+-.|+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (810)
T 3now_A 174 ITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIK 253 (810)
T ss_dssp HHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 6555543211 11111 1222222111211 357999999999999998874 445556667777
Q ss_pred HHhcCCCCcchhhHHhhhHhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHH
Q 007842 132 RLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMS 205 (587)
Q Consensus 132 ~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~ 205 (587)
..........+..++..++.+++..++. .....++.+..++.++++.++..+..+++..+..-.. +.+.+.-.|
T Consensus 254 ~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~ 333 (810)
T 3now_A 254 DKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVD 333 (810)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHH
T ss_pred HHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcH
Confidence 7666666666778888888888877553 2346789999999999999999999999997665221 112222248
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhcC-----h---hhhhhchHHHHHHhccCC--cHHHHHHHHHHHHHHHHHhCC-
Q 007842 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLE-----P---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP- 274 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~- 274 (587)
.+..+++++++.+|..|+.+|..++...+ + +.....+.+.+.+++.++ ++.+|..++.+|..+...-..
T Consensus 334 ~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk 413 (810)
T 3now_A 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK 413 (810)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 89999988888999999999999875322 1 112346788888888777 789999999999988642111
Q ss_pred -Ccc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-----------------------------------HHHHH
Q 007842 275 -EPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------------------------------PELAI 317 (587)
Q Consensus 275 -~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~~ 317 (587)
... ....+|.++.++++++..++..++.+|..++.... ...+.
T Consensus 414 ~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve 493 (810)
T 3now_A 414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493 (810)
T ss_dssp HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence 111 23589999999999899999999999999987431 01122
Q ss_pred HhHhHHHHHhccCCcHHHHHHHHHHHHccccccch-h-HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH-
Q 007842 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL- 394 (587)
Q Consensus 318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~- 394 (587)
...+|.+..++.++++.+|..+++++.+++..... . ....-.+|.+..++++.++.+|..|+++|..++....++..
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 35789999999999999999999999999853211 1 12334689999999999999999999999998865433321
Q ss_pred ----HhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhh---ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007842 395 ----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (587)
Q Consensus 395 ----~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
....+|.+.+++.+. +...+..++.++..++..- .........+|.+..++.+++..||.+|+.++++++.
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~- 652 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM- 652 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-
Confidence 124688888888754 3344556777787776531 1111223457888888889999999999999999975
Q ss_pred hChH---HHh--hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--HH-HH-hhHHHHHHhhcCCCChhHHHHHHHH
Q 007842 467 FGPE---WAM--QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EI-TC-SRLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 467 ~~~~---~~~--~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~--~~-~~-~~il~~l~~~l~d~~~~vR~~~~~~ 537 (587)
+++ .+. ...++.+..++..++..+|..|+.+|+++...... .. +. ...+|.+..++.+++..+|..++.+
T Consensus 653 -~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 653 -SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp -SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred -ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 222 122 35789999999999999999999999999863221 22 23 5789999999999999999999999
Q ss_pred HHHhhhhhch---HHHHhhHHHHHHHhcCCC---CccHHHHHHHHHHHHHH
Q 007842 538 LQSLIPIVDQ---SMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDH 582 (587)
Q Consensus 538 l~~l~~~~~~---~~~~~~i~~~l~~l~~d~---d~~Vr~~a~~al~~l~~ 582 (587)
+.++...-+. ......+++.|..++.++ +.+++..|..||+.+.+
T Consensus 732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 9999864221 133456789999987655 67899999999998875
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=1.2e-21 Score=208.17 Aligned_cols=515 Identities=11% Similarity=0.028 Sum_probs=345.8
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcch---Hhh
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEH---AHV 86 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~---~~~ 86 (587)
+..+++.|.+++...|..+++.+..... .......+|.+...+ +.+..+|..++.++++++..-..... ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 4789999999999999988887764422 122245666666643 56778999999999988652111000 123
Q ss_pred hHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---HH
Q 007842 87 LLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---IL 160 (587)
Q Consensus 87 l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~ 160 (587)
.++.|..++. ++++.+|..|+.+|..++..-.. .......+|.+..++.+.+..++..|+..+..++..... ..
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 5555555554 45899999999999998764221 122345788888888888888888899888887654322 12
Q ss_pred -HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCch-hHHHHHHHHHHHHhhhcCh
Q 007842 161 -KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP 235 (587)
Q Consensus 161 -~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~ 235 (587)
....++.+..++.+++..++..++.++..++..... .......++.+..++.+.++ .++..++.++..++..-..
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 356889999999999999999999999877742110 11223346666667766654 4555677778777742211
Q ss_pred --hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
.......++.+..++.+.+..++..++.++..++...........++|.+..++++.++.+|..++.+|..++..-..
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 222345688999999999999999999999999876554434457899999999999999999999999999764211
Q ss_pred H---HHHHhHhHHHHHhccCC-c-HHHHHHHHHHHHccccccchh------HHHHhHHHHHHHhhcCCCh-HHHHHHHHh
Q 007842 314 E---LAIQHILPCVKELSSDS-S-QHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEFP-DVRLNIISK 381 (587)
Q Consensus 314 ~---~~~~~i~~~l~~~~~d~-~-~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~-~vr~~a~~~ 381 (587)
. ......++.+.+++.+. + ..+|..++.+|++++...+.. ......+|.+..++.+.+. .+|..++.+
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 1 11134677777777653 3 489999999999997543321 1233568999999988764 999999999
Q ss_pred hhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 382 LDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 382 l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
|+.++..-... .....++|.+.+++.+.++.+|..++.+++. ..+ .-......++..++.+
T Consensus 513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n-------q~~----------~~~~~~~~v~~~a~~a 575 (780)
T 2z6g_A 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ-------QQF----------VEGVRMEEIVEACTGA 575 (780)
T ss_dssp HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-------------CC----------STTCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcccc-------chh----------hcccChHHHHHHHHHH
Confidence 99998532111 1123567888888777777666654332221 000 0012335688888888
Q ss_pred HHHHHHHhCh--HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHH
Q 007842 460 LKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVA 535 (587)
Q Consensus 460 l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~ 535 (587)
|+.++..-.. .......+|.+.+++.+++..+|..++.++..++..-.... .....++.+.++++++++.||..++
T Consensus 576 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~ 655 (780)
T 2z6g_A 576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655 (780)
T ss_dssp HHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8887631110 11235678999999999999999999999999874211111 1234678899999999999999999
Q ss_pred HHHHHhhhhhc
Q 007842 536 KVLQSLIPIVD 546 (587)
Q Consensus 536 ~~l~~l~~~~~ 546 (587)
.+|..+...-+
T Consensus 656 ~aL~~l~~~~~ 666 (780)
T 2z6g_A 656 AVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHcCCh
Confidence 99999987544
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=8.5e-22 Score=201.87 Aligned_cols=377 Identities=11% Similarity=0.064 Sum_probs=277.9
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh----hhhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhC---CC
Q 007842 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---PE 275 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~---~~ 275 (587)
++.+...++++++.+|..|+..+..+...... ......++|.+..++.++ ++.+|..++.+|+.++.... ..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34444445555666666676666666543211 112345778888888876 78888888888888775211 01
Q ss_pred ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc-c
Q 007842 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G 351 (587)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~ 351 (587)
......+|.+..+++++++.+|..|+.+|+.++...+. ......++|.+..++.+.++.+|..+++++..++..- +
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 11235788888888888899999999999998864211 1223457888999999899999999999999988543 1
Q ss_pred --hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--h-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007842 352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~ 426 (587)
.......++|.+..++.+.++.++..++.+|..++..... . .....++|.+..++.++++.+|..++.+++.++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 2234567889999999999999999999999998854221 1 1223678999999999999999999999998874
Q ss_pred hhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhccCCchhHHHHHHHHH
Q 007842 427 QLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAI 499 (587)
Q Consensus 427 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~~R~~a~~~l 499 (587)
..+ ...+...++|.+..++.++++.+|..|+.+|+.++.. ..+ .+...++|.+..++.++++.+|..++++|
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 321 1112235788899999999999999999999998752 122 12356899999999999999999999999
Q ss_pred HHhhcccCh--HH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--------------HHHhhHHHHHH
Q 007842 500 SLLAPVMGS--EI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLV 559 (587)
Q Consensus 500 ~~l~~~~~~--~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~l~ 559 (587)
++++...++ +. ....++|.+..++.++++.+|..++.+|..++...... ......++.|.
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~ 487 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF 487 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence 999875443 22 23458899999999999999999999999998754321 11233577888
Q ss_pred HhcCCCCccHHHHHHHHHHHHH
Q 007842 560 ELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 560 ~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.+..+++++|+..|..++..+-
T Consensus 488 ~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 488 NCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHcCCCHHHHHHHHHHHHHHC
Confidence 8999999999999988887654
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.91 E-value=2.4e-21 Score=200.01 Aligned_cols=475 Identities=13% Similarity=0.112 Sum_probs=341.4
Q ss_pred CCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcc
Q 007842 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE 82 (587)
Q Consensus 4 ~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~ 82 (587)
|.+.-.-+..+++.+.|++...|..+.-.+..++.. .++.. ..+++.+.. ..+.++.+|..+..+++++. .++
T Consensus 44 G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~ 117 (591)
T 2vgl_B 44 GKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDK 117 (591)
T ss_dssp TCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGG
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHH
Confidence 333333356788899999999998888777776542 23322 233455544 44667788888888888773 467
Q ss_pred hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHH-hhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--
Q 007842 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-- 159 (587)
....+.|.+.+++.|+++.||+.|+.++..++... ++.+. ..+.|.+..+..|++..++..|+..++.+.+..++.
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 78888898999999999999999999999999854 33333 368899999999888899999999999888765321
Q ss_pred --HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC--h
Q 007842 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P 235 (587)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~ 235 (587)
.....++.+...+.+.+++.+..+++.++.+... ++.....+++.+..++++.++.|+..|+.++..+.+.++ +
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 2234444555555677899998888877665422 223446678888888899999999999999999876542 2
Q ss_pred h---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 007842 236 Q---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (587)
Q Consensus 236 ~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
+ .....+.+.+..+.+ +++.+|..++.+++.++...+.-. ...+- .+....+|+ +.||..++..+..++..-+
T Consensus 275 ~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp BSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh
Confidence 2 122345565655554 789999999999999998644321 11111 222223444 9999999998888764322
Q ss_pred HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 313 ~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (587)
.+.+++.+...+.+.++.+|..++.+++.++..++. ..+.+++.+..++++....++..++.++..+....+..
T Consensus 351 ----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 351 ----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK 424 (591)
T ss_dssp ----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS
T ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch
Confidence 256778888888999999999999999999987643 24567899999999999999999998888887654322
Q ss_pred hHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH
Q 007842 393 LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (587)
Q Consensus 393 ~~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
.+.+++.+.+.+. ..++.+|..++..+|..+..... .+.++..+.+.+.+.+..||.+++.++.++....+..
T Consensus 425 --~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~- 498 (591)
T 2vgl_B 425 --YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE- 498 (591)
T ss_dssp --CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-
T ss_pred --HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-
Confidence 2456677777665 46788999999999887665532 2455666666777889999999999999998755432
Q ss_pred HhhhhHHHHHhhc-cC-CchhHHHHHHHHHHHhhc
Q 007842 472 AMQHITPQVLEMI-NN-PHYLYRMTILRAISLLAP 504 (587)
Q Consensus 472 ~~~~l~~~l~~~l-~d-~~~~~R~~a~~~l~~l~~ 504 (587)
....+..+++.. .| .++.+|..|...+.-+..
T Consensus 499 -~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 499 -TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp -THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred -HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 123455555543 45 678999999988877643
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=1e-21 Score=197.64 Aligned_cols=378 Identities=13% Similarity=0.073 Sum_probs=270.4
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhc-Ch---hhhhh-chHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCC---
Q 007842 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP---QDCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--- 274 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~---~~~~~-~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~--- 274 (587)
++.+...++++++.+|..|+..+..+.... .+ ..... .++|.+.++++++ ++.+|..++.+++.++..-.+
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344444445555566666666666554311 11 11122 5677777777776 788888888888887642100
Q ss_pred CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhHhHHHHHhccC-CcHHHHHHHHHHHHcccccc
Q 007842 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLL 350 (587)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~ 350 (587)
.......+|.+..+++++++.+|..++.+|+.++..... . .....++|.+..++.+ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 111245888999999998899999999999988864321 1 1224578888888885 78999999999999887543
Q ss_pred -c--hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 007842 351 -G--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (587)
Q Consensus 351 -~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l 424 (587)
+ .......++|.+..++.+.++.++..++.++..++...... .....++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 1 12234678899999999999999999999999887643211 12245788888999999999999999999888
Q ss_pred HHhhCh---hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842 425 ASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRA 498 (587)
Q Consensus 425 ~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~ 498 (587)
+...+. ......++|.+..++.++++.+|..|+.+++.++..... ......++|.+..++.++++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 753211 111224788899999999999999999999998752111 12235788999999999999999999999
Q ss_pred HHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---------HHHhhH-----HHHHHH
Q 007842 499 ISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKTI-----RPCLVE 560 (587)
Q Consensus 499 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~i-----~~~l~~ 560 (587)
+++++....++. ....++|.+..+++++++.+|..++.+|..++...+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999986544332 23468999999999999999999999999998754321 122333 577888
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 007842 561 LTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 561 l~~d~d~~Vr~~a~~al~~l~ 581 (587)
+..+++.+|+..|..++..+-
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 889999999999888887654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=1.5e-21 Score=196.36 Aligned_cols=379 Identities=11% Similarity=0.069 Sum_probs=288.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhh-HHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcCh---
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKT-DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP--- 235 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~-~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~--- 235 (587)
++.+.+.++++++.+|..++..+..++.....+. ... .++|.+..+++++ ++.+|..++.++..++...+.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5666777788899999999999999875322221 223 6788888888887 889999999999998864322
Q ss_pred hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhh
Q 007842 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRIL 311 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 311 (587)
......++|.+.++++++++.+|..++.+|+.++...+ .......+++.+..++++ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 12235689999999999999999999999999986321 011123578999999985 78999999999999998643
Q ss_pred CH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 007842 312 NP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (587)
Q Consensus 312 ~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (587)
++ ......++|.+..++.+.++.+|..+++++..++..... ......++|.+..++.+.++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 122367889999999999999999999999999865322 112345789999999999999999999999999
Q ss_pred hhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 386 ~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
+...+.. .....++|.+.+++.++++.+|..++.+++.++.... .......++|.+..++.++++.||..|+.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8643321 1223688999999999999999999999999875211 111223578889999999999999999999
Q ss_pred HHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---------HHHhhH-----HHHHHh
Q 007842 460 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------ITCSRL-----LPVVIN 521 (587)
Q Consensus 460 l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---------~~~~~i-----l~~l~~ 521 (587)
++.++....++. ....++|.+.+++.++++.+|..++.++..+....+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987544332 23568999999999999999999999999998643221 122222 566777
Q ss_pred hcCCCChhHHHHHHHHHHHhhh
Q 007842 522 ASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 522 ~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
+..++++.+|..+..++..+..
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 7778888888888888877653
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.90 E-value=4.9e-21 Score=198.13 Aligned_cols=530 Identities=10% Similarity=0.017 Sum_probs=360.4
Q ss_pred ccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhh
Q 007842 9 YPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (587)
Q Consensus 9 ~~~~~l~~~l~s~~--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 86 (587)
..+..|+..+++.. .++|....+.+.++...+... +...-...+.+.+.-.. .| .+. ..
T Consensus 10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~---------------~~~~k~~~l~kli~~~~--~G-~d~-~~ 70 (618)
T 1w63_A 10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREE---------------DNTYRCRNVAKLLYMHM--LG-YPA-HF 70 (618)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTT---------------CTTTHHHHHHHHHHHHH--TT-CCC-GG
T ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHH--cC-CCC-cc
Confidence 45889999999853 355555555555443332211 11122233333332211 23 222 23
Q ss_pred hHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHH
Q 007842 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (587)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (587)
+.....+++.+++...|+.+.-.+..++..- ++ ..-.....+.+-+.+++..+|..|+..++.+. .++....+.+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e-~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~ 145 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER-QD-VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG 145 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HH-HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cH-HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 3444445667888889988888888776542 22 22344555556667788889999999998886 3567788899
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhhhhchHHH
Q 007842 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPV 245 (587)
Q Consensus 167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~ 245 (587)
.+..++.|+++.||+.|+.+++.+.... +...+.+++.+..++.|.++.|+..|+.++..++..-+. ......+.|.
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~ 223 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ 223 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999999999999999864 334457788888899999999999999999998764322 1122344454
Q ss_pred HHHhcc---------------CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCChHHHHHHHHHhH
Q 007842 246 IVNFSQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKV 304 (587)
Q Consensus 246 l~~~~~---------------d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l 304 (587)
+.+.+. ..++..+...++.++.++.. .......+.+.+..++ ++.+..|...|++++
T Consensus 224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i 301 (618)
T 1w63_A 224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301 (618)
T ss_dssp HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 443332 24677888888888877642 1111234555555543 234567888888887
Q ss_pred HHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842 305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 305 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
..+.. .........+.+..++.++++.+|..++.+++.++...+. ......+.+..++.|++..||..+++.+..
T Consensus 302 ~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 302 MDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp HHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 76532 1222234667778888889999999999999998864322 234455678888999999999999999998
Q ss_pred hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (587)
Q Consensus 385 l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
++..-. .+.+++.+.+.+.+.+..+|..++..++.++..+.+. ....++.++.++.+....++..++..+..+.
T Consensus 377 l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 377 LVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred Hccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 876422 2456777777778889999999999999999876543 3456778888888877778888888888888
Q ss_pred HHhChHHHhhhhHHHHHhhccC--CchhHHHHHHHHHHHhhcccChH---------HHHhhHHHHHHhhcC--CCChhHH
Q 007842 465 EEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---------ITCSRLLPVVINASK--DRVPNIK 531 (587)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~~~~~~---------~~~~~il~~l~~~l~--d~~~~vR 531 (587)
..... .....++.+.+.+.+ ........+++++|..+..+... .....+.+.+..+++ ..++.+|
T Consensus 451 ~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 451 TNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp HHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred hcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 75442 234456666665553 23444557999999998643210 001223344444433 5689999
Q ss_pred HHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 532 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 532 ~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
..++.++.++....+.. .+.+...|..+..|.|.+||..|...+.-+.
T Consensus 529 ~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 529 GYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 99999999998876532 4566777777889999999999999887765
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=6.3e-21 Score=195.40 Aligned_cols=380 Identities=11% Similarity=0.075 Sum_probs=285.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc----hhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcCh---
Q 007842 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP--- 235 (587)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~--- 235 (587)
.++.+...+.++++.+|..++..+..++.....+ .....++|.+..++.++ ++.+|..|+.+|..++...+.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3556666677778888888888888886543222 12345678888888876 788999999999888764322
Q ss_pred hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 007842 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
.......+|.+..++.++++.+|..|+.+|+.++...+ ........+|.+..++.+.++.+|..++.+|..++..-+
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence 12234578888888888899999999999999875311 111223578999999999889999999999999986431
Q ss_pred ---HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch--hH-HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842 313 ---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 313 ---~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (587)
.......++|.+..++.+.++.+|..++.++..++...+. .. ....++|.+..++.+.++.+|..++.+|+.++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 1234467889999999999999999999999998864321 11 22367899999999999999999999999987
Q ss_pred hhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----hHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 387 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 387 ~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
...+. ......++|.+..++.++++.+|..++.+++.++... .+. +...++|.+..++.++++.+|..|+.+
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 53221 1223467899999999999999999999999887521 111 223467888888899999999999999
Q ss_pred HHHHHHHhCh--H----HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---------HH-----HhhHHHHH
Q 007842 460 LKRLAEEFGP--E----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVV 519 (587)
Q Consensus 460 l~~l~~~~~~--~----~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l 519 (587)
|+.++...+. + .....++|.+..++.++++.+|..++.++..+....... .+ ....++.+
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L 486 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHH
Confidence 9999876443 2 233568999999999999999999999999998643221 11 23357788
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 520 INASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 520 ~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
..+..++++.|+..+..+|..+...
T Consensus 487 ~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 487 FNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 8899999999999999999888754
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=8.5e-20 Score=191.18 Aligned_cols=498 Identities=12% Similarity=0.042 Sum_probs=336.4
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhh---hhhhhhhhhhcc-C-CcHHHHHHHHHHhccccccCCCcc--
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYVGGVE-- 82 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~l~~~~~~~~-- 82 (587)
-+..|+..++++++.+|..|+..|..++........ ....+|.+...+ + ++.+++..++..|..+...-.+..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 478899999999999999999999998864432211 124566666643 3 367888888888887764211000
Q ss_pred hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh---HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (587)
.....++.|..++.++++.+|..|+.+|.+++...+... .....+|.+..+..+++...+..++..+..+....++.
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 112356778888889999999999999999987653321 24567888888888876666666777776666433221
Q ss_pred ----HHHHHHHHHHHhcCCCC-hHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 007842 160 ----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (587)
Q Consensus 160 ----~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
.....++.|..++.+.+ ..++..++.++..++..-.. .......++.+..++.+.+..++..++.+|..++..
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 22345677777777654 56778888888887753211 112234678888888888899999999999999876
Q ss_pred cChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCC--hHHHHHHHHHhHHHH
Q 007842 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKF 307 (587)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l 307 (587)
.+.......++|.+.+++.++++.+|..++.+|+.++..-. ........++.++.++.+. .+.+|..++.+|+.+
T Consensus 255 ~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp CTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 55433445688999999999999999999999999875310 0111234788888888753 279999999999999
Q ss_pred HhhhCHH------HHHHhHhHHHHHhccCCc-HHHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCChHHHHHH
Q 007842 308 CRILNPE------LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNI 378 (587)
Q Consensus 308 ~~~~~~~------~~~~~i~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (587)
+...+.. ......+|.+.+++.+++ +.+|..++.++++++..-.. ......++|.+..++.+.+.++|..+
T Consensus 335 ~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a 414 (644)
T 2z6h_A 335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414 (644)
T ss_dssp TSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-
T ss_pred hcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHh
Confidence 7543321 122457888999988764 79999999999998754221 12234678889999988888888888
Q ss_pred HHhhhh--hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--hhhHHHHHHHHHHhcCCCchHHHH
Q 007842 379 ISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRD 454 (587)
Q Consensus 379 ~~~l~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~ 454 (587)
+.+++. +.... .+..++..++.++..++..... .......+|.+..++.+.+..+|.
T Consensus 415 ~~al~n~~~~~~~-------------------~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 475 (644)
T 2z6h_A 415 SMGGTQQQFVEGV-------------------RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 475 (644)
T ss_dssp ---------CCSS-------------------CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred hhccccchhcccc-------------------cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHH
Confidence 776664 22111 1233444555555544432110 001123578888899999999999
Q ss_pred HHHHHHHHHHHHh--ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC
Q 007842 455 AAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526 (587)
Q Consensus 455 ~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~ 526 (587)
.|+.+|+.+...- .........++.+.+++.+++..+|..|..+|+.+...-+..+.....+..+..++++.
T Consensus 476 ~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 476 VAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 9999999887421 11112244678888999999999999999999999886654322111355666666654
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.88 E-value=4.5e-20 Score=189.18 Aligned_cols=377 Identities=11% Similarity=0.081 Sum_probs=267.2
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhcC-h---hhhhhchHHHHHHhccCCc-HHHHHHHHHHHHHHHHHhCC---C
Q 007842 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---E 275 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~~~~~~~~---~ 275 (587)
+|.+..++.++++.+|..|+..+..+..... + ......++|.+..++.+++ +.+|..|+.+|+.++..... .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444444455556666666666666544322 1 1223456777777777665 77888888888777752110 1
Q ss_pred ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhc-cCCcHHHHHHHHHHHHccccccc
Q 007842 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG 351 (587)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~ 351 (587)
......+|.+..++.++++.+|..|+.+|+.++..... ......++|.+..++ .+.++.++..++.++..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 11235788888888888888888888888888753211 111234677788877 67788899999999888876532
Q ss_pred --hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007842 352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~ 426 (587)
.......++|.+..++.+.+++++..++.+|+.++...... .....++|.+..++.++++.+|..++.+++.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 22334667888888998888999999999998887543221 1223578888899999999999999999888875
Q ss_pred hhCh---hhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842 427 QLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRA 498 (587)
Q Consensus 427 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~~R~~a~~~ 498 (587)
.... ..+...++|.+..++.++ ++.+|..|+.+++.++.. ..+ .....++|.+..++.++++.+|..++.+
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 2211 112234678888888888 999999999999999852 222 1335788999999998999999999999
Q ss_pred HHHhhcccChHHH----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--------------HHHhhHHHHHHH
Q 007842 499 ISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVE 560 (587)
Q Consensus 499 l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~l~~ 560 (587)
+++++...+++.. ...+++.+..++.++++.++..++.+|..++...+.. ......++.+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 9999876443321 2467899999999999999999999999998654321 112334677888
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 007842 561 LTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 561 l~~d~d~~Vr~~a~~al~~l~ 581 (587)
+..+++.+|+..|...+.++.
T Consensus 475 L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 889999999999999888764
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=1.4e-19 Score=185.56 Aligned_cols=379 Identities=11% Similarity=0.088 Sum_probs=289.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc----hhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHHHhhhcCh---h
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP---Q 236 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~---~ 236 (587)
+|.+...+.++++.+|..++..+..++.....+ .....++|.+..++.+++ +.+|..|+.+|..++...+. .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 566666777888999999999999987754322 133456788888888776 89999999999998874322 1
Q ss_pred hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhC
Q 007842 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN 312 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
......+|.+..++.++++.+|..++.+|+.++..-+. .......++.++.++ .+.++.++..++.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 22335788999999999999999999999999853110 111235788888988 67789999999999999987532
Q ss_pred --HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842 313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 313 --~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (587)
.......++|.+..++.+.++.++..++.++..++...+.. .....++|.+..++.+.++.++..++.+|+.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 22344678899999999999999999999999998654321 1233578999999999999999999999999986
Q ss_pred hhchh---hHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh----hHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 388 VIGID---LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 388 ~~~~~---~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
..... .+...++|.+..++.++ ++.+|..++.+++.++.. ..+. +...++|.+..++.+.+..+|..|+.+
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 33211 12245789999999988 999999999999998753 1211 223467888999999999999999999
Q ss_pred HHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---------HH-----HhhHHHHHHh
Q 007842 460 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVVIN 521 (587)
Q Consensus 460 l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l~~ 521 (587)
|+.++....++. ....+++.+..++.++++.++..++.++..+....... .+ ....+..+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999987633432 23568999999999999999999999999998643220 01 2334677888
Q ss_pred hcCCCChhHHHHHHHHHHHhhhh
Q 007842 522 ASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 522 ~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
+.+++++.++..+...+..+...
T Consensus 475 L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHcCCCHHHHHHHHHHHHHHCCC
Confidence 88999999999999999988754
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.87 E-value=3.2e-19 Score=183.36 Aligned_cols=475 Identities=12% Similarity=0.037 Sum_probs=296.0
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHh-hh--hhhhhhhhhcc--CCcHHHHHHHHHHhccccccCCCcchHh
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER-TR--KELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~-~~--~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~ 85 (587)
+..|++.++++++.+|..|+..+..++....... .. ...+|.+.+.+ .++.+++..++..+.++... .+...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~~~ 95 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REGLL 95 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chhHH
Confidence 5666666666666666666666666553211000 00 02344444432 12344555555555544321 11111
Q ss_pred -----hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH-
Q 007842 86 -----VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI- 159 (587)
Q Consensus 86 -----~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~- 159 (587)
..+|.|..++.++++.++..|+.+|..++..-+... ..
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~------------------------------------~~i 139 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK------------------------------------MAV 139 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH------------------------------------HHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH------------------------------------HHH
Confidence 133444444444455555555555555443321100 01
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHHHhhhcCh
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~ 235 (587)
.....+|.+..++.++++.++..++.++..++..... .......++.+..++.+.+ ..++..+..++..++..-..
T Consensus 140 ~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc
Confidence 2345778888888888999999998888887753110 0122234556666665554 45666777888777742211
Q ss_pred --hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
.......++.+..++.++++.++..++.++..++...+........+|.+.+++.++++++|..++.+|..++..-..
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 122345788899999999999999999999999876544434457899999999999999999999999999764211
Q ss_pred --H-HHHHhHhHHHHHhccC--CcHHHHHHHHHHHHccccccchh------HHHHhHHHHHHHhhcCCC-hHHHHHHHHh
Q 007842 314 --E-LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISK 381 (587)
Q Consensus 314 --~-~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~ 381 (587)
. ......+|.+.+++.+ .++.+|..++.+++.++...+.. ......+|.+..++++.+ +.++..++.+
T Consensus 300 ~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHH
Confidence 1 1223467777777764 34899999999999997643321 122346899999999876 5999999999
Q ss_pred hhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842 382 LDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (587)
Q Consensus 382 l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
++.++..-... .....++|.+.+++.+.++.+|..++..+....-.-| -....++..++.+
T Consensus 380 l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~-----------------~~~~~i~~~~~~a 442 (529)
T 1jdh_A 380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGA 442 (529)
T ss_dssp HHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT-----------------BCHHHHHHHHHHH
T ss_pred HHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc-----------------ccHHHHHHHHHHH
Confidence 99988532211 1224578888888888888998887776654110001 1233455666666
Q ss_pred HHHHHHHhC--hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC--hHHHHhhHHHHHHhhcCCCChhHHHHHH
Q 007842 460 LKRLAEEFG--PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVPNIKFNVA 535 (587)
Q Consensus 460 l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~d~~~~vR~~~~ 535 (587)
+..++.... ........+|.+..++.+++..+|..+..+++++...-. ........++.+..+++++++.||..+.
T Consensus 443 l~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~ 522 (529)
T 1jdh_A 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHH
Confidence 666654211 112235678999999999999999999999999874211 0112345678899999999999999999
Q ss_pred HHHHHh
Q 007842 536 KVLQSL 541 (587)
Q Consensus 536 ~~l~~l 541 (587)
.+|..+
T Consensus 523 ~aL~~l 528 (529)
T 1jdh_A 523 AVLFRM 528 (529)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.85 E-value=3.6e-18 Score=175.85 Aligned_cols=540 Identities=12% Similarity=0.055 Sum_probs=353.9
Q ss_pred CCCcccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcc
Q 007842 5 DEPLYPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (587)
Q Consensus 5 ~~~~~~~~~l~~~l~s~~--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~ 82 (587)
..++--+..|+..+++.. .++|...-+.+.++...+.. +...+....+..+.+.+.-.. .| .+
T Consensus 7 ~~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~------------~~~~~~~~k~~~l~Kli~l~~--~G-~d 71 (621)
T 2vgl_A 7 GEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKG------------DKALDGYSKKKYVCKLLFIFL--LG-HD 71 (621)
T ss_dssp --CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHS------------SSCCCHHHHHHHHHHHHHHHH--HS-CC
T ss_pred CCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHHHHHH--cC-CC
Confidence 345666888898888764 34555555555554332210 000122233444444432211 23 22
Q ss_pred hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHH
Q 007842 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 162 (587)
. ..+.+...+++.+++...|+.+.-++..+++.-+ + ..-.....+..-+.+++...|..|+..++.+.. ++...
T Consensus 72 ~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e-~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~ 145 (621)
T 2vgl_A 72 I-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-E-LIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAE 145 (621)
T ss_dssp C-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-H-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHH
T ss_pred C-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-H-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHH
Confidence 2 2334444457788899999999888888775432 2 222334445555556777888888888887743 66888
Q ss_pred HHHHHHHHhc--CCCChHHHHHHHHhHHHHHHhhccchhhh--HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--
Q 007842 163 ELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-- 236 (587)
Q Consensus 163 ~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~--~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (587)
.+.+.+..++ .|.++.||+.|+.++..+....+ ...+ .+.+.+..++.|.++.|+.+|+..+..++..-+..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence 8999999999 99999999999999999998642 3333 67888889999999999999999998887653321
Q ss_pred hhhhchHHHHHHhccC-------------CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---CC-C-------
Q 007842 237 DCVAHILPVIVNFSQD-------------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---RD-N------- 292 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d-------------~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l---~d-~------- 292 (587)
...+.+...+.+++.+ +++..+...++.++.++.. ++......+.+.+...+ .+ +
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 1233344444444322 1566777777777655421 00111122333332222 11 1
Q ss_pred -h--HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-
Q 007842 293 -E--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK- 368 (587)
Q Consensus 293 -~--~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~- 368 (587)
+ ..|...|++++..+. +...........+..++.++++.+|..++.++..++...+.........+.+..+++
T Consensus 303 ~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~ 379 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKT 379 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhcc
Confidence 2 266666777666653 233444667788888888899999999999999998765432334556677888888
Q ss_pred CCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 448 (587)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 448 (587)
|++..||..++..+..++.. ...+.++..+.+.+.+.+...|..++..++.++..+.+. .+.++..+..++.+.
T Consensus 380 d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 380 ERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIA 453 (621)
T ss_dssp CCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhh
Confidence 99999999999998887743 223677778888888889999999999999998876543 344667777777665
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCch--hHHHHHHHHHHHhhcccChHH-H-HhhHHHHHHhhcC
Q 007842 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRAISLLAPVMGSEI-T-CSRLLPVVINASK 524 (587)
Q Consensus 449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--~~R~~a~~~l~~l~~~~~~~~-~-~~~il~~l~~~l~ 524 (587)
...+...++..+..++..... .....+..+.+.+.++.. .+-..+++.+|..+....... . ...++..+.+.+.
T Consensus 454 ~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~ 531 (621)
T 2vgl_A 454 GDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH 531 (621)
T ss_dssp GGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc
Confidence 555666666666666643321 234456667777777653 344566799999876433210 0 1234556666677
Q ss_pred CCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHH
Q 007842 525 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSID 581 (587)
Q Consensus 525 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~--d~d~~Vr~~a~~al~~l~ 581 (587)
+.++.||..++.++.++....+. ..+.+...+..... |.|.+||.+|..-+.-+.
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 88999999999999999876543 23456666666666 999999999998776654
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.83 E-value=1.6e-18 Score=179.29 Aligned_cols=506 Identities=11% Similarity=0.051 Sum_probs=236.6
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhh--hhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~--~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l 87 (587)
++..+-+.+++++...|..++..+-.+ ...|.+..+ .+++.++ .+++-+.++...-.+..+.+ .+++.....
T Consensus 35 e~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~~~~~~~vik~~---~s~~~~~Krl~Yl~~~~~~~--~~~e~~~l~ 108 (618)
T 1w63_A 35 ECAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPAHFGQLECLKLI---ASQKFTDKRIGYLGAMLLLD--ERQDVHLLM 108 (618)
T ss_dssp HHHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCCGGGHHHHHHHH---HSSSHHHHHHHHHHHHHHCC--CCHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCCcchHHHHHHHH---cCCchHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 345566666666666666666655543 334533211 1222222 13344444444444444433 122222334
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHH
Q 007842 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 167 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~ 167 (587)
.+.|.+-+.++++.+|-.|+++|+.+.. ..+.+.+.|.+..+..+.+..+|..|+..++.++... ++....+++.
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~ 183 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPA 183 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGG
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHH
Confidence 4445555556666666666666666541 1234455555555555555666666665555555433 2333355566
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHHhhcc-----chhhhHHHHHHHHhhh-----------CCchhHHHHHHHHHHHHhh
Q 007842 168 YTQLCQDDMPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQ-----------DDQDSVRLLAVEGCAALGK 231 (587)
Q Consensus 168 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~ 231 (587)
+..++.|.++.|+..++.++..++..-++ ....+.++..+..+.. ..++..+...++.++.++.
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 66666666666666666666665543211 1122233333333221 1244455556666666555
Q ss_pred hcChhhhhhchHHHHHHhc------cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007842 232 LLEPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (587)
Q Consensus 232 ~~~~~~~~~~l~~~l~~~~------~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (587)
.-+.. .+.+.+.+.+++ ++.+..|...+++++..+.. .........+.+..++.++++++|..++.++.
T Consensus 264 ~~~~~--~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~ 338 (618)
T 1w63_A 264 NDDDS--SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLL 338 (618)
T ss_dssp TCHHH--HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 43221 122333333321 23344555555555544311 11111234455555566666666666666666
Q ss_pred HHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 007842 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (587)
Q Consensus 306 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (587)
.++...+. ......+.+..++.|++..+|..+++.+..++..-. .+.+++.+...+.+.+.++|..++.+++.+
T Consensus 339 ~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 339 KTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLA 412 (618)
T ss_dssp HHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66554221 123334455555566666666666666666554221 123344444455555566666666666666
Q ss_pred hhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCC--CchHHHHHHHHHHHHH
Q 007842 386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRL 463 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l 463 (587)
+..+.... ...++.+.+++.+....++..++..+..+....+ +.... .++.+...+.+ ....+...++.++|++
T Consensus 413 a~k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~l~~~-~v~~L~~~l~~~~~~~~~~~~~~wilGEy 488 (618)
T 1w63_A 413 AEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV-EMHAY-TVQRLYKAILGDYSQQPLVQVAAWCIGEY 488 (618)
T ss_dssp HHSSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-STHHH-HHHHHHHHHHHCCSCSHHHHHHHHHHHHH
T ss_pred HHHhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh-hHHHH-HHHHHHHHHhcccccHHHHHHHHHHHhhh
Confidence 65543221 2344555554444433344434444444443321 11111 11122222221 1223333466666666
Q ss_pred HHHhCh---------HHHhhhhHHHHHhhcc--CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHH
Q 007842 464 AEEFGP---------EWAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF 532 (587)
Q Consensus 464 ~~~~~~---------~~~~~~l~~~l~~~l~--d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~ 532 (587)
...+.. ......+++.+..+++ ..+..+|..++.++.++....+.. .+.+...+.....|.+.+||.
T Consensus 489 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrd 566 (618)
T 1w63_A 489 GDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQ 566 (618)
T ss_dssp HHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHH
Confidence 654311 0001112222222222 345566666666666665544332 133334444455666666666
Q ss_pred HHHHHHHHhhh
Q 007842 533 NVAKVLQSLIP 543 (587)
Q Consensus 533 ~~~~~l~~l~~ 543 (587)
.|...+..+..
T Consensus 567 RA~~y~~ll~~ 577 (618)
T 1w63_A 567 RAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 66666655543
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=2.9e-17 Score=166.47 Aligned_cols=375 Identities=12% Similarity=0.105 Sum_probs=261.6
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHHHhhhc--Ch--hhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC---Cc
Q 007842 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLL--EP--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EP 276 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~---~~ 276 (587)
+-+...+++++..++..|...+..+...- ++ .....-++|.+.++++ ++++.++..|+.+|++++..-.+ ..
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33444555666666666666666654321 11 2233446788888775 44578888888888888742110 11
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 007842 277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP 348 (587)
Q Consensus 277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~ 348 (587)
.....+|.++.++++++..+|..|+.+|+.++..... .......++.+..++.+++ ..+++.++.++..++.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 2235789999999999999999999999998753211 1222346777777776543 3566777777777765
Q ss_pred ccc---hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007842 349 LLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (587)
Q Consensus 349 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~ 422 (587)
.-. .......++|.+..++.+.+++++..++.+|..++..-... .....++|.+.+++.++++.++..++.+++
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 321 22234578899999999999999999999999987543211 122457889999999999999999999998
Q ss_pred HHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHH
Q 007842 423 LLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL 496 (587)
Q Consensus 423 ~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~ 496 (587)
.++..-. ........++.+..++.+++..+|..|+.++++++..... ......++|.+..++.++++.+|..|+
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 8764211 0111223456677888999999999999999998742111 123456889999999999999999999
Q ss_pred HHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh---chH-HH-----HhhHHHHHHHhcC
Q 007842 497 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQS-MV-----EKTIRPCLVELTE 563 (587)
Q Consensus 497 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~~-~~-----~~~i~~~l~~l~~ 563 (587)
++|.+++.....+. ....+++.+.++++++++.++..++.+|.++.... +.. .+ ....+..+..|..
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence 99999987554432 23567899999999999999999999999987542 211 11 2235677888888
Q ss_pred CCCccHHHHHHHHHHH
Q 007842 564 DPDVDVRFFATQAIQS 579 (587)
Q Consensus 564 d~d~~Vr~~a~~al~~ 579 (587)
+++.+|+..|.+.+.+
T Consensus 460 ~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 460 HENESVYKASLNLIEK 475 (510)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999998887777654
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.80 E-value=7.3e-17 Score=164.54 Aligned_cols=375 Identities=12% Similarity=0.107 Sum_probs=260.0
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHHHhhhcC--h--hhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC---Cc
Q 007842 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EP 276 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~---~~ 276 (587)
+-+...++.+++..+..|+..+..+...-. + .....-++|.+.+++. ++++.++..|+.+|+.++..-.. ..
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333444455555555555555555432211 1 1233446777777764 45578888888888888743111 11
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 007842 277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP 348 (587)
Q Consensus 277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~ 348 (587)
.....+|.++.++.+++..+|..|+.+|+.++..-.. .......++.+..++.+++ ..+...++.++..++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 2235788999999999999999999999988753211 1222346777887776543 3566777777777765
Q ss_pred ccc---hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007842 349 LLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (587)
Q Consensus 349 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~ 422 (587)
.-. .......++|.+..++.+.+++++..++.+|..++..-... .....++|.+.+++.++++.++..++.+++
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 332 22234568899999999999999999999999887543211 123467889999999999999999999998
Q ss_pred HHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHH
Q 007842 423 LLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL 496 (587)
Q Consensus 423 ~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~ 496 (587)
.++..-. ........++.+..++.+++..+|..|+.+|+.++..... ......++|.+..++.+++..+|..|+
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence 8864211 1111223567788899999999999999999999752111 123456899999999999999999999
Q ss_pred HHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh---chH-HHH-----hhHHHHHHHhcC
Q 007842 497 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQS-MVE-----KTIRPCLVELTE 563 (587)
Q Consensus 497 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~~-~~~-----~~i~~~l~~l~~ 563 (587)
++|++++.....+. ....+++.+.++++++++.++..++.+|.++.... +.. .+. ...+..+..|..
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 478 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 478 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence 99999987544432 23557899999999999999999999999987532 211 221 224667788888
Q ss_pred CCCccHHHHHHHHHHH
Q 007842 564 DPDVDVRFFATQAIQS 579 (587)
Q Consensus 564 d~d~~Vr~~a~~al~~ 579 (587)
+++.+|+..|...+++
T Consensus 479 ~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 479 HENESVYKASLNLIEK 494 (529)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999877766654
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.79 E-value=5.9e-18 Score=158.03 Aligned_cols=255 Identities=19% Similarity=0.129 Sum_probs=182.8
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhH
Q 007842 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359 (587)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 359 (587)
.-++.+...++|+++.+|..|+.+|+.+.. +..++.+..++.|+++.+|..++.+++.+.... .....+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence 356777777888888888888888877652 345677777888888888888888887776321 112345
Q ss_pred HHHHH-HhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHH
Q 007842 360 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (587)
Q Consensus 360 ~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 438 (587)
++.+. .+++|+++.||..++.+|+.+....+ ...+.++|.+...++|+++.+|..++.+++.+.. +..+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 56555 35678888888888888888764321 1124567788888888888999888888876532 1246
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHH
Q 007842 439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 518 (587)
Q Consensus 439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~ 518 (587)
|.+...+.|+++.||..|+.+++.+.. .....++.+...++|+++.+|..++.+++.+.. +..+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHH
Confidence 677778888999999999988877621 023567788888888899999999999988863 456778
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007842 519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS 579 (587)
Q Consensus 519 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~d~~Vr~~a~~al~~ 579 (587)
+...++|++ ||..++.+|+.+.. ..++|.|.+++. +++++++..+..++++
T Consensus 228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 888887754 88889999888754 256777777654 4567788777777653
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.79 E-value=1.3e-16 Score=161.59 Aligned_cols=379 Identities=10% Similarity=0.072 Sum_probs=278.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhhhcCh---h
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP---Q 236 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~---~ 236 (587)
++-+...++++++.++..+...+.++.+.-..+. +..-.+|.|.++++. +++.++..|+.+|..++..-+. .
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3445566788889999999999998876543332 233468889888864 4578999999999999864332 1
Q ss_pred hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 007842 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFC 308 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~ 308 (587)
....-.+|.+..++.+++..+|..|+.+|+.++..-+ ........++.+..++.+.+ ..+...++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 2233478999999999999999999999999985311 11122356788888887654 235666777777776
Q ss_pred hhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 007842 309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (587)
Q Consensus 309 ~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (587)
..-.+ ......++|.+.+++.++++.++..++.++..++...... .....++|.+..++.+.+..++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 53321 1334678899999999999999999999999998643221 12234789999999999999999999999
Q ss_pred hhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHH
Q 007842 383 DQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAA 456 (587)
Q Consensus 383 ~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a 456 (587)
+.++..-... ......+|.+..++.+++..+|..++.++..++..-. .......++|.+..++.+.+..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9987532211 1224566777888899999999999999998864311 111223478899999999999999999
Q ss_pred HHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cChH-HH-----HhhHHHHHHhhc
Q 007842 457 ANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSE-IT-----CSRLLPVVINAS 523 (587)
Q Consensus 457 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~~~-~~-----~~~il~~l~~~l 523 (587)
+.+|++++.....+. .....++.+.+++.+++..++..++.+|.++.+. .+.. .+ ....+..+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999987544432 2356889999999999999999999999998753 2221 11 123466777788
Q ss_pred CCCChhHHHHHHHHHHHhhh
Q 007842 524 KDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 524 ~d~~~~vR~~~~~~l~~l~~ 543 (587)
.+++.+|+..+.+.|...+.
T Consensus 459 ~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp GCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHCC
Confidence 88999999999999887654
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.78 E-value=7.2e-16 Score=157.20 Aligned_cols=379 Identities=11% Similarity=0.081 Sum_probs=278.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcCh---h
Q 007842 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP---Q 236 (587)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~---~ 236 (587)
++-+...+.++++..+..++..+..+...-..+. ....++|.+..+++ ++++.++..|+.+|..++..-+. .
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455566778889999888888888765433322 33447888888885 45678999999999999865432 1
Q ss_pred hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 007842 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFC 308 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~ 308 (587)
....-.+|.+..++.+++..+|..|+.+|+.++..-+ ........++.++.++.+.+ ..+...++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 2334578999999999999999999999999985211 11122356888888887654 235666777777776
Q ss_pred hhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 007842 309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (587)
Q Consensus 309 ~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (587)
..-.+ ......++|.+..++.++++.++..+++++..++...... .....++|.+..++.+.+..++..++.++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 54322 2334678899999999999999999999999987643221 12235789999999999999999999999
Q ss_pred hhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHH
Q 007842 383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAA 456 (587)
Q Consensus 383 ~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a 456 (587)
+.++..-.. .......+|.+..++.+++..+|..++.+++.++..-. .......++|.+..++.+.+..+|..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 998753221 12234567888899999999999999999998875311 111223478899999999999999999
Q ss_pred HHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cCh-HHHH-----hhHHHHHHhhc
Q 007842 457 ANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EITC-----SRLLPVVINAS 523 (587)
Q Consensus 457 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~~-~~~~-----~~il~~l~~~l 523 (587)
+.+|++++..-..+. ....+++.|.+++..++..++..++.+|.++.+. .+. +.+. ...+..+..+.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 477 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 477 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence 999999987544432 2356799999999999999999999999998752 222 1121 22356677778
Q ss_pred CCCChhHHHHHHHHHHHhhh
Q 007842 524 KDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 524 ~d~~~~vR~~~~~~l~~l~~ 543 (587)
.+++..|+..|.+.|...+.
T Consensus 478 ~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 478 RHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp GCSSHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHHHHHCC
Confidence 88999999999988877654
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.78 E-value=2.3e-17 Score=154.00 Aligned_cols=255 Identities=15% Similarity=0.067 Sum_probs=199.4
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 320 (587)
..++.+...+.|+++.+|..++..|+.+. ....++.+..+++|+++.+|..++.+|+.+... .. ..+.+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~-~~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KK-CEDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TT-THHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cc-cchHH
Confidence 45677788889999999999999998875 245788899999999999999999999887532 11 12345
Q ss_pred hHHHH-HhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHH
Q 007842 321 LPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (587)
Q Consensus 321 ~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l 399 (587)
++.+. .++.|+++.||..++.+++.++...+ ...+.++|.+...++|+++.||..++.+++.+.. +..+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 66665 35688999999999999998864321 1234678889999999999999999999998754 3468
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 007842 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479 (587)
Q Consensus 400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 479 (587)
|.+..++.|+++.+|..++..++.+... .+..++.+...+.|+++.||..|+.+|+.+. ....+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence 8888899999999999999999876311 2346788888999999999999999998764 2457888
Q ss_pred HHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC-CChhHHHHHHHHHHH
Q 007842 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQS 540 (587)
Q Consensus 480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~ 540 (587)
+...++|++ +|..++.+++.+.. +..+|.+..++++ +++.++..++..+..
T Consensus 228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 888888865 89999999999865 4678888888764 577788777777653
No 38
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.76 E-value=1.9e-14 Score=157.72 Aligned_cols=563 Identities=11% Similarity=0.073 Sum_probs=330.2
Q ss_pred HHHHHhcC--ccHHHHHHHhhcHHHHHHh-h---------ChH---hhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc
Q 007842 13 VLIDELKN--DDIQLRLNSIRRLSTIARA-L---------GEE---RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY 77 (587)
Q Consensus 13 ~l~~~l~s--~~~~~R~~a~~~l~~~~~~-~---------~~~---~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~ 77 (587)
.|++-+.+ .+..+|..|+..++..... . .++ ..++.+++.+.. .+..+|..++.++..++..
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~ 115 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADS 115 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHh
Confidence 34444433 4678999999999865433 1 211 123344444433 3478899999998887653
Q ss_pred CCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-----hh-------HHhh---HHHHHHHH---hcCCCC
Q 007842 78 VGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-----SD-------LVDW---YIPLVKRL---AAGEWF 139 (587)
Q Consensus 78 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~~-------~~~~---l~~~l~~l---~~~~~~ 139 (587)
-. ++.++.+++.|.+.++++++..+..++.++..+++.... +. +... +++++..+ ..+...
T Consensus 116 d~-p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~ 194 (960)
T 1wa5_C 116 DF-PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN 194 (960)
T ss_dssp HS-TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred hC-ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22 245788999998888888889999999999999986542 11 1111 12222222 232211
Q ss_pred c---ch------hhHHhhhHhhc-CCCChH---HHHHHHHHHHHhcCCC-----------C----hHHHHHHHHhHHHHH
Q 007842 140 T---AR------VSACGLFHIAY-PSAPDI---LKTELRSIYTQLCQDD-----------M----PMVRRSAASNLGKFA 191 (587)
Q Consensus 140 ~---~r------~~a~~~l~~~~-~~~~~~---~~~~l~~~l~~l~~d~-----------~----~~vr~~~~~~l~~l~ 191 (587)
. .+ ..+++++..+. ...++. ....+.+.+...+... . ..+|+.+++.+..++
T Consensus 195 ~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~ 274 (960)
T 1wa5_C 195 NKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYT 274 (960)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHH
Confidence 1 12 22444444332 233332 2345556655544221 1 357888899998888
Q ss_pred Hhhccc--hhhhHHHHHHHHhhh-----CCchhHHHHHHHHHHHHhhhcCh-h-----hhhhchH-HHHHHhc-------
Q 007842 192 ATVEPA--HLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKLLEP-Q-----DCVAHIL-PVIVNFS------- 250 (587)
Q Consensus 192 ~~~~~~--~~~~~l~~~l~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~~l~-~~l~~~~------- 250 (587)
...++. .+.+.+++.+...+. ..++.++..+++.+..+++.-.. . .....++ +.+...+
T Consensus 275 ~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~ 354 (960)
T 1wa5_C 275 TRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDV 354 (960)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHH
Confidence 765331 233444444444443 34568888899988887643110 0 1222222 2222211
Q ss_pred ----------------cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC------CChHHHHHHHHHhHHHHH
Q 007842 251 ----------------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR------DNEAEVRIAAAGKVTKFC 308 (587)
Q Consensus 251 ----------------~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~ 308 (587)
.+..+..|.+|...+..++..++ +.....+++.+...+. +.+|..|.+|+.+++.++
T Consensus 355 e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia 433 (960)
T 1wa5_C 355 ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALA 433 (960)
T ss_dssp TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 12234689999999999998876 3223345566555555 677999999999999997
Q ss_pred hhh-----CHH------HHHHhHhHHHHHhccCC---cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHH
Q 007842 309 RIL-----NPE------LAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV 374 (587)
Q Consensus 309 ~~~-----~~~------~~~~~i~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 374 (587)
... +.. .+.+-+...+...+.|+ ++.+|..++++++.+++.+.+ .+...++|.+.+.+.|.+..|
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V 512 (960)
T 1wa5_C 434 INGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVV 512 (960)
T ss_dssp BSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHH
T ss_pred HHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhH
Confidence 642 111 11111122233334566 899999999999999988754 457788899999999999999
Q ss_pred HHHHHHhhhhhhhhhc----------hh---hHHhhHHHHHHHHhcCCC---h--HHHHHHHHHHHHHHHhhChhh--hH
Q 007842 375 RLNIISKLDQVNQVIG----------ID---LLSQSLLPAIVELAEDRH---W--RVRLAIIEYIPLLASQLGVGF--FD 434 (587)
Q Consensus 375 r~~a~~~l~~l~~~~~----------~~---~~~~~~l~~l~~~~~~~~---~--~vR~~~~~~l~~l~~~~~~~~--~~ 434 (587)
|..|+.++..++.... .+ .+.+.+++.+..+++... . .....+.++++.++...+.+. +.
T Consensus 513 ~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~ 592 (960)
T 1wa5_C 513 YTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF 592 (960)
T ss_dssp HHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH
T ss_pred HHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999887421 22 233455556666655531 1 123467777777777665322 33
Q ss_pred HHHHHHHHHhc----CC-CchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc
Q 007842 435 DKLGALCMQWL----QD-KVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (587)
Q Consensus 435 ~~l~~~l~~~l----~d-~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~ 506 (587)
+.+++.+...+ ++ .+...+..++.+++.++...+++. +.+.++|.+...+..........+...++.+....
T Consensus 593 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 44444444333 33 456778889999999998755432 45778888888776655566777777777776542
Q ss_pred C-hHHHHhhHHHHHH--hhcCCCChhHHHHHHHHHHHhhhhhchHHH-HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 507 G-SEITCSRLLPVVI--NASKDRVPNIKFNVAKVLQSLIPIVDQSMV-EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 507 ~-~~~~~~~il~~l~--~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
. ...+...++|.+. ..++.+. .+ ...+..+.......+.... .+.++..+.++..++.. +..+...++.+..
T Consensus 673 ~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~ 748 (960)
T 1wa5_C 673 ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIML 748 (960)
T ss_dssp SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHH
Confidence 1 1112345667666 5555432 22 2455555555443322111 13355555555555543 3667777777666
Q ss_pred hhc
Q 007842 583 VMM 585 (587)
Q Consensus 583 ~~~ 585 (587)
.++
T Consensus 749 ~~~ 751 (960)
T 1wa5_C 749 LID 751 (960)
T ss_dssp HSC
T ss_pred HCC
Confidence 544
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.76 E-value=2.8e-14 Score=156.38 Aligned_cols=555 Identities=13% Similarity=0.078 Sum_probs=324.3
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCC-cHHHHHHHHHHhccccccC----CCcc----
Q 007842 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD-DDEVLLAMAEELGVFIPYV----GGVE---- 82 (587)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~-~~~v~~~~~~~l~~l~~~~----~~~~---- 82 (587)
+.+++.+.+.+..+|......+..|+....| ..|++++|.+.+.+.+ +...+..+..++..+.+.. .+.+
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~ 166 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 4667777777899999999999999988777 5789999999886643 3334444444554443311 1111
Q ss_pred -------hHhhhHHHHhhh---hcchhh---HHH------HHHHHHHHHHHhhcChhhHH---hhHHHHHHHHhcCC---
Q 007842 83 -------HAHVLLPPLETL---CTVEET---CVR------DKAVESLCRIGSQMRESDLV---DWYIPLVKRLAAGE--- 137 (587)
Q Consensus 83 -------~~~~l~~~l~~l---~~~~~~---~vr------~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~l~~~~--- 137 (587)
+.+.+++++..+ +.++.. .+| ..+++++..+...--++.+. ..+.+.+..+....
T Consensus 167 l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 246 (960)
T 1wa5_C 167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPL 246 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 111122333222 333211 233 33444444433221122222 33445554443210
Q ss_pred ------------CCcchhhHHhhhHhhcCCCChH---HHHHHHHHHHHhcC-----CCChHHHHHHHHhHHHHHHhhc--
Q 007842 138 ------------WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFAATVE-- 195 (587)
Q Consensus 138 ------------~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~-----d~~~~vr~~~~~~l~~l~~~~~-- 195 (587)
++..|..++.++..+....++. +...+++.+...+. ..+..++..+++.+..+++.-.
T Consensus 247 ~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~ 326 (960)
T 1wa5_C 247 LEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYF 326 (960)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHH
T ss_pred ccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHH
Confidence 1234556666666555443332 34455555555443 3456788888888777664311
Q ss_pred ----cchhhhHHH-HHHHHhh-----------------------hCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHH
Q 007842 196 ----PAHLKTDIM-SIFEDLT-----------------------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247 (587)
Q Consensus 196 ----~~~~~~~l~-~~l~~l~-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 247 (587)
.+.+.+.++ +++...+ .++.++.|.+|...+..++...+ +...+.+++.+.
T Consensus 327 ~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~ 405 (960)
T 1wa5_C 327 EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMK 405 (960)
T ss_dssp GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHH
Confidence 112223333 2222221 01223689999999999998877 445666777766
Q ss_pred Hhcc------CCcHHHHHHHHHHHHHHHHHhC-CC-cccc-----chHHHH----HHhcCCC---hHHHHHHHHHhHHHH
Q 007842 248 NFSQ------DKSWRVRYMVANQLYELCEAVG-PE-PTRM-----DLVPAY----VRLLRDN---EAEVRIAAAGKVTKF 307 (587)
Q Consensus 248 ~~~~------d~~~~vR~~a~~~l~~~~~~~~-~~-~~~~-----~l~~~l----~~~l~d~---~~~vr~~a~~~l~~l 307 (587)
+.++ +++|+.|.+|+.+++.++.... .. .... .+.+.+ ...+.|+ .+.||..++.+++.+
T Consensus 406 ~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~ 485 (960)
T 1wa5_C 406 GFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF 485 (960)
T ss_dssp HHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH
Confidence 6555 6789999999999999975421 11 1111 444443 3345666 899999999999999
Q ss_pred HhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----------hh---HHHHhHHHHHHHhhcCCC---
Q 007842 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----------KD---ATIEQLLPIFLSLLKDEF--- 371 (587)
Q Consensus 308 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----------~~---~~~~~l~~~l~~~l~d~~--- 371 (587)
++.+.++ +...+++.+.+.+.|++..||..|+.++..+++... .+ .+.+.+++.+..+++...
T Consensus 486 ~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~ 564 (960)
T 1wa5_C 486 RNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP 564 (960)
T ss_dssp GGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH
T ss_pred HhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC
Confidence 9988654 568889999999999999999999999999876421 22 245566666667766531
Q ss_pred h--HHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHh----cC-CChHHHHHHHHHHHHHHHhhChhh---hHHHHHH
Q 007842 372 P--DVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA----ED-RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGA 439 (587)
Q Consensus 372 ~--~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~----~~-~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~ 439 (587)
. .....+.++++.++...+.+ .+...+++.+...+ ++ .+...+..++++++.++...+++. +.+.+.|
T Consensus 565 ~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p 644 (960)
T 1wa5_C 565 EKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMP 644 (960)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 1 12346677777777665532 12234444444332 33 466788788999999988755443 4567888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHH--hhccCCchhHHHHHHHHHHHhhcccChHHH-Hhh
Q 007842 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVL--EMINNPHYLYRMTILRAISLLAPVMGSEIT-CSR 514 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~--~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~-~~~ 514 (587)
.+...+..........+...++.+.... .. .....++|.+. ..+..+. .-...+.++..+....+.... ...
T Consensus 645 ~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~ 721 (960)
T 1wa5_C 645 TFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPDLVP 721 (960)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSCSHH
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHHHHHHHH
Confidence 8888887766677888888888887654 11 12245666666 5444432 223444555554432221100 133
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhc-CCCCccHHHHHH
Q 007842 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELT-EDPDVDVRFFAT 574 (587)
Q Consensus 515 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~d~~Vr~~a~ 574 (587)
++..+.+++.++.. +..++..++.++..++.. .+...+++.+...+ .+.....+....
T Consensus 722 ~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l 783 (960)
T 1wa5_C 722 VLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLT 783 (960)
T ss_dssp HHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHH
Confidence 45555555555543 478888888888877755 34555666665543 333344543333
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.75 E-value=6.5e-16 Score=159.09 Aligned_cols=471 Identities=10% Similarity=0.042 Sum_probs=215.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (587)
+...++.+.|++...|..+.-++..++.. .++. .--++..+.. ..+.++-+|..+..+++.+. .++....+.|
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~~e~-~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e~~~~l~~ 149 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNS-NSEL-IRLINNAIKNDLASRNPTFMGLALHCIANVG----SREMAEAFAG 149 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCC-CHHH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----CHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccC-CcHH-HHHHHHHHHHhcCCCCHHHHHHHHHHhhccC----CHHHHHHHHH
Confidence 44445555565555555444444332210 1111 1112233322 33445555555555555552 2455556666
Q ss_pred HHhhhh--cchhhHHHHHHHHHHHHHHhhcChhhHH-hhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH---HHHH
Q 007842 90 PLETLC--TVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTE 163 (587)
Q Consensus 90 ~l~~l~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~ 163 (587)
.+.+.+ .|+++.||+.|+.++.++.+. .++.+. ..+.+.+..+..|.+..++..|+.++..+...-+.. ....
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~ 228 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSL 228 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 666666 666666666666666666653 333222 145566666666555566666666655554432211 2223
Q ss_pred HHHHHHHhcCCC-------------ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhh---C---------C--ch
Q 007842 164 LRSIYTQLCQDD-------------MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ---D---------D--QD 216 (587)
Q Consensus 164 l~~~l~~l~~d~-------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~---d---------~--~~ 216 (587)
++..+..++.+. +++.+..+.+.++.+...- ++.....+.+.+..+++ + . ..
T Consensus 229 ~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~ 307 (621)
T 2vgl_A 229 AVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN 307 (621)
T ss_dssp HHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccchHH
Confidence 333333332211 4566666665555544210 11222222232222221 1 0 11
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHH
Q 007842 217 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAE 295 (587)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~ 295 (587)
.|...++.++..+. +.......+...+..++.++++.+|..++..+..++...+.........+.+..++. |++..
T Consensus 308 aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~ 384 (621)
T 2vgl_A 308 AVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVS 384 (621)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHh
Confidence 44444444444442 122233445555666666666677777777766665432211111233445555555 66666
Q ss_pred HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHH
Q 007842 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 375 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 375 (587)
+|..++..+..++.. . ....++..+...+.+.+...|..++.+++.++..+... .+..+..+.+++.+....+.
T Consensus 385 Ir~~aL~lL~~l~~~---~-Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~ 458 (621)
T 2vgl_A 385 VRQRAVDLLYAMCDR---S-NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVS 458 (621)
T ss_dssp HHHHHHHHHHHHCCH---H-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHcCh---h-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccch
Confidence 776666666655432 2 22445555555555566666666666666665544321 12334444444443333333
Q ss_pred HHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhChhh-h-HHHHHHHHHHhcCCCchH
Q 007842 376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF-F-DDKLGALCMQWLQDKVYS 451 (587)
Q Consensus 376 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~--~vR~~~~~~l~~l~~~~~~~~-~-~~~l~~~l~~~l~d~~~~ 451 (587)
..++..+..+..... ......+..+.+.+.++.. .+-..++..+|..+..+.... . ...++..+...+.+.+..
T Consensus 459 ~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~ 536 (621)
T 2vgl_A 459 EEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVP 536 (621)
T ss_dssp SHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHH
Confidence 333333333332211 1112333444444554432 122223355555444332110 0 112334444455566666
Q ss_pred HHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc--CCchhHHHHHHHHHHHh
Q 007842 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRAISLL 502 (587)
Q Consensus 452 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~~R~~a~~~l~~l 502 (587)
||..++.++.++....+. ..+.+...+..... |.+..+|..|.....-+
T Consensus 537 v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 537 TRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 666666666666543321 11112111211222 55566666665554443
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-13 Score=152.05 Aligned_cols=564 Identities=9% Similarity=0.035 Sum_probs=326.1
Q ss_pred cHHHHHHHhcCc------cHHHHHHHhhcHHHHHHhhCh-----------H---hhhhhhhhhhhhccC--Cc-------
Q 007842 10 PIAVLIDELKND------DIQLRLNSIRRLSTIARALGE-----------E---RTRKELIPFLSENND--DD------- 60 (587)
Q Consensus 10 ~~~~l~~~l~s~------~~~~R~~a~~~l~~~~~~~~~-----------~---~~~~~l~p~l~~~~~--~~------- 60 (587)
.+..+++.++++ ++..+..++..+..++..+.. + ...+.+++++.+.+. .+
T Consensus 123 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~ 202 (971)
T 2x1g_F 123 AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEA 202 (971)
T ss_dssp ---HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Confidence 356777777765 667788888888877642210 0 111244454544221 11
Q ss_pred HHHHHHHHHHhcccccc--CCCcchHhhhHHHHhhh----h-----------cchhhHHHHHHHHHHHHHHhhcChh---
Q 007842 61 DEVLLAMAEELGVFIPY--VGGVEHAHVLLPPLETL----C-----------TVEETCVRDKAVESLCRIGSQMRES--- 120 (587)
Q Consensus 61 ~~v~~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~l----~-----------~~~~~~vr~~a~~~l~~l~~~~~~~--- 120 (587)
.+++..+.++++.++.+ ++.. ....+++.+..+ + .++++.+|+.|+.++..+...-.++
T Consensus 203 ~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 203 YSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred hhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 16777778888765542 2222 344566655442 0 1367899999999999998742211
Q ss_pred hHHhhHHHHHHHHh-------cCCCC---cchhhHHhhhHhhcCCC-----------C---hHHHHHHHHHHHHhcCC--
Q 007842 121 DLVDWYIPLVKRLA-------AGEWF---TARVSACGLFHIAYPSA-----------P---DILKTELRSIYTQLCQD-- 174 (587)
Q Consensus 121 ~~~~~l~~~l~~l~-------~~~~~---~~r~~a~~~l~~~~~~~-----------~---~~~~~~l~~~l~~l~~d-- 174 (587)
.....++|.+..+. .+++. ......+.++..+.... . +.....+++.+..+...
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~ 361 (971)
T 2x1g_F 282 KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPG 361 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCC
Confidence 11222333332211 22221 33444455554433111 1 12344566666665533
Q ss_pred ---CChHHHHHHHHhHHHHHHhh-c------cch-------hhhHHHHHHHHhh---hCC-----c-------hhHHHHH
Q 007842 175 ---DMPMVRRSAASNLGKFAATV-E------PAH-------LKTDIMSIFEDLT---QDD-----Q-------DSVRLLA 222 (587)
Q Consensus 175 ---~~~~vr~~~~~~l~~l~~~~-~------~~~-------~~~~l~~~l~~l~---~d~-----~-------~~vr~~a 222 (587)
.+..|+..++..+..++... . .+. +...+++.+...+ .|+ + ...|..+
T Consensus 362 ~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~ 441 (971)
T 2x1g_F 362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDI 441 (971)
T ss_dssp CTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHH
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHH
Confidence 46788888888888777632 1 111 1122223222222 111 0 1467888
Q ss_pred HHHHHHHhhhcChhhhhhchHHHHHHhccC-----CcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc-CCChH
Q 007842 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL-RDNEA 294 (587)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l-~d~~~ 294 (587)
...+..++...+ +...+.+.+.+...++. .+|+.|.+++.+++.++..+.... ....+++.+..+. .|.++
T Consensus 442 ~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~ 520 (971)
T 2x1g_F 442 SDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNV 520 (971)
T ss_dssp HHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCH
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCH
Confidence 888888888776 33556666666665543 789999999999999987655432 1123455444443 25689
Q ss_pred HHHHHHHHhHHHHHhhhCHH-HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcC--
Q 007842 295 EVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKD-- 369 (587)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d-- 369 (587)
.||..++.+++.+++.+... .+.+.+++.+...+ | +.|+..++.++..+++.++.. .+.+.++..+..++..
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~ 597 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR 597 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence 99999999999999887643 45677888888777 4 789999999999998766543 2445566666666766
Q ss_pred CChHHHHHHHHhhhhhhhhhchhh---HHhh----HHHHHHHHhcCC--ChHHHHHHHHHHHHH---HHhhChh------
Q 007842 370 EFPDVRLNIISKLDQVNQVIGIDL---LSQS----LLPAIVELAEDR--HWRVRLAIIEYIPLL---ASQLGVG------ 431 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~---~~~~----~l~~l~~~~~~~--~~~vR~~~~~~l~~l---~~~~~~~------ 431 (587)
-....+..+.++++.++..++.+. +... ++..+....+.. +...+...+..++.+ ...++..
T Consensus 598 ~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~ 677 (971)
T 2x1g_F 598 MKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQAT 677 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccc
Confidence 357899999999999987665221 1122 233333333333 333444444444444 3433321
Q ss_pred ---------hhHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842 432 ---------FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRA 498 (587)
Q Consensus 432 ---------~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~ 498 (587)
.+.+.++|.+...+.+ .+..|.+.++.+++.++..+|.++ +.+.+++.+...++.... ..++..
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l 754 (971)
T 2x1g_F 678 DQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEI 754 (971)
T ss_dssp ------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHH
Confidence 1234567777766643 367899999999999998887653 345556666555554332 358888
Q ss_pred HHHhhcccChHH--------HHhhHHHHHHhhcCC-------CChhHHHHHHHHHHHhhhhhchHHH-----HhhHHHHH
Q 007842 499 ISLLAPVMGSEI--------TCSRLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRPCL 558 (587)
Q Consensus 499 l~~l~~~~~~~~--------~~~~il~~l~~~l~d-------~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l 558 (587)
++.+...+|.+. +...+...+..++.. ..++++......+..+..+.+...+ ...+++..
T Consensus 755 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~ 834 (971)
T 2x1g_F 755 SKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYA 834 (971)
T ss_dssp HHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHH
Confidence 888888777631 122223333333333 3788999999999988876554332 35555555
Q ss_pred HHhcCCCCccHHHHHHHHHHHHH
Q 007842 559 VELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 559 ~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
...+.-+++.....+...+..+-
T Consensus 835 ~~~l~~~~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 835 QRGMTLPESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 55445566666666666665543
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.71 E-value=1.3e-13 Score=151.78 Aligned_cols=535 Identities=11% Similarity=0.066 Sum_probs=320.5
Q ss_pred CccHHHHHHHhhcHHHHHHh----hCh---HhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHh
Q 007842 20 NDDIQLRLNSIRRLSTIARA----LGE---ERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92 (587)
Q Consensus 20 s~~~~~R~~a~~~l~~~~~~----~~~---~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 92 (587)
+.+..+|..|+..+....+. +.+ +..++.+++.+.+...+...+|..++.++..++..-.. .++.+++.+.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~ 128 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVI 128 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHH
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHH
Confidence 56889999999999865432 222 23355667777654344578999999999887764332 4666777766
Q ss_pred hhhcch------hhHHHHHHHHHHHHHHhhcCh-----------hhH---HhhHHHHHHHHhcCC-CC-------cchhh
Q 007842 93 TLCTVE------ETCVRDKAVESLCRIGSQMRE-----------SDL---VDWYIPLVKRLAAGE-WF-------TARVS 144 (587)
Q Consensus 93 ~l~~~~------~~~vr~~a~~~l~~l~~~~~~-----------~~~---~~~l~~~l~~l~~~~-~~-------~~r~~ 144 (587)
..++++ ++..+..++..|..+++.+.. +.+ ...+++++..+..+. .. ..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~ 208 (971)
T 2x1g_F 129 NTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNR 208 (971)
T ss_dssp HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHH
Confidence 666554 677889999999988864210 111 223455554444321 11 45666
Q ss_pred HHhhhHhhcC--CCChHHHHHHHHHHHHhc----------------CCCChHHHHHHHHhHHHHHHhhccc---hhhhHH
Q 007842 145 ACGLFHIAYP--SAPDILKTELRSIYTQLC----------------QDDMPMVRRSAASNLGKFAATVEPA---HLKTDI 203 (587)
Q Consensus 145 a~~~l~~~~~--~~~~~~~~~l~~~l~~l~----------------~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l 203 (587)
++..+..... ..+......+++.+.. + .++++.+|..+++++..+...-..+ .....+
T Consensus 209 al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 209 AVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 7666655433 3333345566776655 3 1246889999999999998752211 122223
Q ss_pred HHHHHH----h---hhCCc---hhHHHHHHHHHHHHhhhcCh-------------hhhhhchHHHHHHhccC-----CcH
Q 007842 204 MSIFED----L---TQDDQ---DSVRLLAVEGCAALGKLLEP-------------QDCVAHILPVIVNFSQD-----KSW 255 (587)
Q Consensus 204 ~~~l~~----l---~~d~~---~~vr~~a~~~l~~l~~~~~~-------------~~~~~~l~~~l~~~~~d-----~~~ 255 (587)
+|.+.. + ..+++ +......++.+..+++.... ......+++.+..+... .++
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 367 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE 367 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence 333222 1 13333 25666667777766643211 11233455555555432 467
Q ss_pred HHHHHHHHHHHHHHHHh-C-----C-Cccc-------cchHHHHHHhcC---CC-----h-------HHHHHHHHHhHHH
Q 007842 256 RVRYMVANQLYELCEAV-G-----P-EPTR-------MDLVPAYVRLLR---DN-----E-------AEVRIAAAGKVTK 306 (587)
Q Consensus 256 ~vR~~a~~~l~~~~~~~-~-----~-~~~~-------~~l~~~l~~~l~---d~-----~-------~~vr~~a~~~l~~ 306 (587)
.|+..++..+..++... . + .... ..+++.+...+. |. + ...|.++...+..
T Consensus 368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY 447 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence 78899999888887632 1 1 1111 123344433331 11 1 2478888888888
Q ss_pred HHhhhCHHHHHHhHhHHHHHhccC-----CcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhh-cCCChHHHHHH
Q 007842 307 FCRILNPELAIQHILPCVKELSSD-----SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLL-KDEFPDVRLNI 378 (587)
Q Consensus 307 l~~~~~~~~~~~~i~~~l~~~~~d-----~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l-~d~~~~vr~~a 378 (587)
++...+ +...+.+++.+...+.. .+|+.|.+++.+++.+++.+... ...+.+++.+..+. .|.++.||..+
T Consensus 448 ~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 448 CYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 888777 34456677777666544 78999999999999999877542 24455666444443 25689999999
Q ss_pred HHhhhhhhhhhchh-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hhHHHHHHHHHHhcCC--CchHHH
Q 007842 379 ISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQD--KVYSIR 453 (587)
Q Consensus 379 ~~~l~~l~~~~~~~-~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d--~~~~vr 453 (587)
+.+++.+...++.+ .+.+.++|.+...+ + ++++..++.++..+++..+.. .+.+.++..+...+.. .+...+
T Consensus 527 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~ 603 (971)
T 2x1g_F 527 LETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDS 603 (971)
T ss_dssp HHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHH
Confidence 99999999887633 44567788887777 3 789999999999998776432 1234455555566665 467899
Q ss_pred HHHHHHHHHHHHHhChHH---HhhhhHHHHH----hhccCC--chhHHHHHH---HHHHHhhcccCh-------------
Q 007842 454 DAAANNLKRLAEEFGPEW---AMQHITPQVL----EMINNP--HYLYRMTIL---RAISLLAPVMGS------------- 508 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~---~~~~l~~~l~----~~l~d~--~~~~R~~a~---~~l~~l~~~~~~------------- 508 (587)
..+.++++.++...+.+. +...+++.+. ...+.+ +...+...+ ..++.+...++.
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~ 683 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQ 683 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCC
Confidence 999999999998665221 1233333333 333332 332344444 444444443332
Q ss_pred --HHHHhhHHHHHHhhcCC--CChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHh
Q 007842 509 --EITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVEL 561 (587)
Q Consensus 509 --~~~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l 561 (587)
..+...++|.+...+.+ .+..+...++.+++.++..++.+ .+...+++.+...
T Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~ 742 (971)
T 2x1g_F 684 PVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVAS 742 (971)
T ss_dssp CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHH
Confidence 12456788887777643 36789999999999988877654 3445555665543
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.71 E-value=2e-12 Score=142.48 Aligned_cols=555 Identities=12% Similarity=0.072 Sum_probs=326.2
Q ss_pred ccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCC------cHHHHHHHHHHhcccc----cc-C--------CC-
Q 007842 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD------DDEVLLAMAEELGVFI----PY-V--------GG- 80 (587)
Q Consensus 21 ~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~------~~~v~~~~~~~l~~l~----~~-~--------~~- 80 (587)
+++.+|......+..+++...|+. |.++++.+.+.... ++..+..+...+..+. .. . ..
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~ 193 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS 193 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CC
T ss_pred CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHH
Confidence 468899999999999998877654 88888888775443 3222222222222111 10 0 00
Q ss_pred -cchHhhhHHHHhhhhcchh--hHHHHHHHHHHHHHHhhcChhh-HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCC
Q 007842 81 -VEHAHVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMRESD-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (587)
Q Consensus 81 -~~~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~ 156 (587)
..+.+.+++++..++.+.+ ..++..+++++..... ++... ....+++.+.+... ....|..++..+..+....
T Consensus 194 l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 194 LAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp SGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccc
Confidence 1245567777777665432 2488888888876554 33211 12456676666554 3456778888887776643
Q ss_pred C-h---HHHHHHHHHHHHh-------cCCCChHHHHHHHHhHHHHHHhhcc--------chhhhHHHHHHHHhhhC----
Q 007842 157 P-D---ILKTELRSIYTQL-------CQDDMPMVRRSAASNLGKFAATVEP--------AHLKTDIMSIFEDLTQD---- 213 (587)
Q Consensus 157 ~-~---~~~~~l~~~l~~l-------~~d~~~~vr~~~~~~l~~l~~~~~~--------~~~~~~l~~~l~~l~~d---- 213 (587)
. + .....+++.+... ..+.+.+.....++.+..++..... ......+++.+.....+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 350 (963)
T 2x19_B 271 DAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY 350 (963)
T ss_dssp TGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCT
T ss_pred ccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCC
Confidence 2 2 2333343333321 2334456666677777776643211 11223445555554443
Q ss_pred -CchhHHHHHHHHHHHHhhhcC-------h------hhhhhchHHHHHHhccCC--------------cH-HHHHHHHHH
Q 007842 214 -DQDSVRLLAVEGCAALGKLLE-------P------QDCVAHILPVIVNFSQDK--------------SW-RVRYMVANQ 264 (587)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~~~d~--------------~~-~vR~~a~~~ 264 (587)
.++.++..++..+..+++... + ......+++.+...+.-+ ++ ..|..+...
T Consensus 351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~ 430 (963)
T 2x19_B 351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT 430 (963)
T ss_dssp TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence 355677777777777766321 1 011222333333322110 11 347777888
Q ss_pred HHHHHHHhCCCccccchHHHHHHhc----CCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHH
Q 007842 265 LYELCEAVGPEPTRMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSA 338 (587)
Q Consensus 265 l~~~~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~ 338 (587)
+..++...+.. ....+.+.+...+ .+.+|..|.+++.+++.+++.+... .+.+.+++.+..+. ++++.+|..
T Consensus 431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~-~~~~~vr~~ 508 (963)
T 2x19_B 431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRIS-ISNVQLADT 508 (963)
T ss_dssp HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSC-CCSHHHHHH
T ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCC-CCcHHHHHH
Confidence 88877766532 2234555555555 6678999999999999999877542 34456666555444 358889999
Q ss_pred HHHHHHccccccch-hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcC--CChHH
Q 007842 339 LASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED--RHWRV 413 (587)
Q Consensus 339 a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~--~~~~v 413 (587)
++.+++.++..+.. ..+.+.+++.+...+.+ +.|+..|+.++..+++..+.. .+.+.++..+..++.. -+...
T Consensus 509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~ 586 (963)
T 2x19_B 509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQ 586 (963)
T ss_dssp HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHH
Confidence 99999999887653 25677888999988866 899999999999999766533 2335555666666654 35688
Q ss_pred HHHHHHHHHHHHHhhChhhhH---HHHHHHHHHhc----CC-CchHHHH---HHHHHHHHHHHHhChH------------
Q 007842 414 RLAIIEYIPLLASQLGVGFFD---DKLGALCMQWL----QD-KVYSIRD---AAANNLKRLAEEFGPE------------ 470 (587)
Q Consensus 414 R~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l----~d-~~~~vr~---~a~~~l~~l~~~~~~~------------ 470 (587)
|..++++++.++...+.+.+. +.+++.+...+ .. .+.+.+. ..+.+++.+.+.++..
T Consensus 587 ~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~ 666 (963)
T 2x19_B 587 CMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR 666 (963)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 999999999998776533322 33343333332 22 2344443 5566677777765520
Q ss_pred ------------HHhhhhHHHHHhhcc--CCchhHHHHHHHHHHHhhcccChHH--------------------------
Q 007842 471 ------------WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEI-------------------------- 510 (587)
Q Consensus 471 ------------~~~~~l~~~l~~~l~--d~~~~~R~~a~~~l~~l~~~~~~~~-------------------------- 510 (587)
.+.+.++|.+..++. ..+..+++.++.+++.+...+|...
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l 746 (963)
T 2x19_B 667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL 746 (963)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHH
Confidence 123455555554432 1245677777777776554333110
Q ss_pred ----------------H----HhhHHHHHHhhcC-C--CChhHHHHHHHHHHHhhhhhchHHH-----HhhHHHHHHHhc
Q 007842 511 ----------------T----CSRLLPVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRPCLVELT 562 (587)
Q Consensus 511 ----------------~----~~~il~~l~~~l~-d--~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~ 562 (587)
. ...++..+...++ + ..+.+|......+..+........+ ...+++.+...+
T Consensus 747 ~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 826 (963)
T 2x19_B 747 TRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLAL 826 (963)
T ss_dssp HHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc
Confidence 0 0111111111111 2 3577888888888877766544321 455666767767
Q ss_pred CCCCccHHHHHHHHHHHHHHh
Q 007842 563 EDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 563 ~d~d~~Vr~~a~~al~~l~~~ 583 (587)
...++++...+...+..+.+.
T Consensus 827 ~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 827 KFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 788888888888887776654
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.70 E-value=1.5e-12 Score=143.49 Aligned_cols=565 Identities=12% Similarity=0.081 Sum_probs=338.6
Q ss_pred CcccHHHHHHH-hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCc
Q 007842 7 PLYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV 81 (587)
Q Consensus 7 ~~~~~~~l~~~-l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~ 81 (587)
++..+..+++. ..+.|++.|.+|-..|..+-.. | ..+..+..++.. +.+.++|..++..+.+.+.. +...
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--P-QAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--T-THHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--H-HHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 33446677777 4468999999999888775432 1 222233333322 34678998888888765432 2211
Q ss_pred c---hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC-----CCCcchhhHHhhhHhhc
Q 007842 82 E---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-----EWFTARVSACGLFHIAY 153 (587)
Q Consensus 82 ~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~~~ 153 (587)
+ ....+++.+.+.. +..+.+|.....++..++....++. +..+++.+.....+ ++...+..++.++..+.
T Consensus 97 ~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 97 QYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp GHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 1 1223444443322 2358999999999999998866655 66777777777654 12224445555554433
Q ss_pred C----C-C--------C---hHHHHHHHHHHHHhcCCCC--hHHHHHHHHhHHHHHHhhccch-hhhHHHHHHHHhhhCC
Q 007842 154 P----S-A--------P---DILKTELRSIYTQLCQDDM--PMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDD 214 (587)
Q Consensus 154 ~----~-~--------~---~~~~~~l~~~l~~l~~d~~--~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~d~ 214 (587)
+ . . . ......+++++..++.+.+ ..++..+++++...+. ++... ....+++.+...+.
T Consensus 175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~-- 251 (963)
T 2x19_B 175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ-- 251 (963)
T ss_dssp HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--
Confidence 1 1 0 0 1245677777877776543 2488888888876665 33211 22556776666664
Q ss_pred chhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHH-------hccCCcHHHHHHHHHHHHHHHHHhCCC--------c
Q 007842 215 QDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPE--------P 276 (587)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~-------~~~d~~~~vR~~a~~~l~~~~~~~~~~--------~ 276 (587)
++.+|..+++++..+.....+. .....+++.+.. ...+.+.......++.+..++...... .
T Consensus 252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 331 (963)
T 2x19_B 252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ 331 (963)
T ss_dssp STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH
Confidence 4678999999999888643221 111222232221 122233344455567776665432110 1
Q ss_pred cccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHhhhC-------H------HHHHHhHhHHHHHhccCC-------
Q 007842 277 TRMDLVPAYVRLLRD-----NEAEVRIAAAGKVTKFCRILN-------P------ELAIQHILPCVKELSSDS------- 331 (587)
Q Consensus 277 ~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~i~~~l~~~~~d~------- 331 (587)
....+++.+.....+ .+++++..++..+..+++... + ..+...+++.+...+..+
T Consensus 332 ~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~ 411 (963)
T 2x19_B 332 SFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411 (963)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 112345555555553 355667777766666665221 1 122233444443333211
Q ss_pred -------cH-HHHHHHHHHHHccccccchhHHHHhHHHHHHHhh----cCCChHHHHHHHHhhhhhhhhhchh--hHHhh
Q 007842 332 -------SQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGID--LLSQS 397 (587)
Q Consensus 332 -------~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 397 (587)
++ ..|..+...+..++...+. ...+.+.+.+...+ .+.+...+.+++.+++.+++....+ .+...
T Consensus 412 ~~~de~~~~~~~r~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~ 490 (963)
T 2x19_B 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPG 490 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 11 3477777788777766664 34566677777776 5667889999999999998776532 22334
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh-hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--Hhh
Q 007842 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQ 474 (587)
Q Consensus 398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~ 474 (587)
+++.+..+ .++++.+|..++..++.+++.+.. ..+.+.+++.++..+.+ +.|+..|+.++..+++..+... +.+
T Consensus 491 l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~ 567 (963)
T 2x19_B 491 LIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAA 567 (963)
T ss_dssp HHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHH
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44433332 446889999999999999886642 23455677888888876 7899999999999998765432 345
Q ss_pred hhHHHHHhhccC--CchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhc----CC-CChhHHH---HHHHHHHHh
Q 007842 475 HITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINAS----KD-RVPNIKF---NVAKVLQSL 541 (587)
Q Consensus 475 ~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l----~d-~~~~vR~---~~~~~l~~l 541 (587)
.++..+..++.. -+...|...+++++.++...+.+. +...+++.+...+ +. .++..|. ..+.+++.+
T Consensus 568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i 647 (963)
T 2x19_B 568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNL 647 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 666666666654 356899999999999998776322 3455555554433 22 2455554 455556565
Q ss_pred hhhhch------------------------HHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHhhc
Q 007842 542 IPIVDQ------------------------SMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 542 ~~~~~~------------------------~~~~~~i~~~l~~l~~--d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
+..++. ..+...+.|.+.++++ -.+.++...++.+++.+...+|
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 648 FTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 555431 1244566777666432 2356899999999998876655
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.70 E-value=9.2e-16 Score=135.29 Aligned_cols=188 Identities=15% Similarity=0.221 Sum_probs=154.7
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHH
Q 007842 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 436 (587)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 436 (587)
....+.+++.+++.++.+|..++.+|+.+.. +..+|.+.+.+.|+++.+|..++..++.+.. . .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~----~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E----R 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----G
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H----H
Confidence 3556788889999999999999999987654 3457778888899999999999988877632 1 2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH
Q 007842 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 516 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il 516 (587)
.++.+...+.|+++.||..|+.+|+.+.. ...++.+...+.|+++.+|..++.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 45677788899999999999999987632 3467888888999999999999999999864 4577
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842 517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 517 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
+.+..+++|+++.||..++.+|+.+.. ...++.|..+++|+++.||..|..+|+++.+.+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 200 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc
Confidence 889999999999999999999999843 357888888889999999999999999987654
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.8e-15 Score=137.49 Aligned_cols=185 Identities=16% Similarity=0.215 Sum_probs=145.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHH-
Q 007842 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEW- 471 (587)
Q Consensus 397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~- 471 (587)
.+-|.+.+.+.+++|+.|..++..+..+....+ ...+ ..+.+.+...+. |++..||..|+.+++.++..+|..+
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344456677788899999998888888877632 1223 457788888884 8889999999999999988877653
Q ss_pred -HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--
Q 007842 472 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 548 (587)
Q Consensus 472 -~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-- 548 (587)
+...++|.+++.+.|++..+|.++..++..+....+. ..++|.+...++++++.+|..++.+++.+....+++
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 4567888888888888888999999999988876653 567888888888888999999999998877665432
Q ss_pred --HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 549 --MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 549 --~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
.+...++|.+..+++|++++||..|..+++.++..+|.
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 45567888888888999999999999999998887764
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.68 E-value=1.3e-15 Score=135.44 Aligned_cols=186 Identities=16% Similarity=0.223 Sum_probs=138.4
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHH
Q 007842 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (587)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 437 (587)
..++.+...++|+++.+|..++..|+.+.. +..+|.+.+.+.|+++.+|..++..++.+.. +..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA 82 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence 446777777888888888888888877653 3456777777888888888888887776532 123
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHH
Q 007842 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP 517 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~ 517 (587)
++.+...+.|+++.||..|+.+|+.+.. ...++.+.+++.|+++.+|..++.+++.+.. +..++
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 146 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 146 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence 5667777888888888888888876632 3457777788888888888888888888754 35677
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 518 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 518 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
.+..+++|+++.||..++.+|+.+.. ....+.|..+++|+++.||..|..+|+.+...
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 78888888888888888888888753 35677777777888888888888888877654
No 48
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=2e-15 Score=137.09 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=121.6
Q ss_pred hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCH
Q 007842 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP 313 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
...+.+.+.+.+.++|.+|..|..++..+..++...+. ......+++.+...+. |.+..||..++.+++.++..++.
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666777888899999999999888876432 1123467888888884 88888888888888888876665
Q ss_pred H--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch
Q 007842 314 E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (587)
Q Consensus 314 ~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (587)
. .+.+.++|.+...+.|++..||.++..++..+....+ .+.++|.+...+++.++.+|..++..++.+....++
T Consensus 91 ~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 91 RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 3 4456677777777777777777777777776665433 234555555566666666666666666665444332
Q ss_pred h----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 007842 392 D----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (587)
Q Consensus 392 ~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~ 430 (587)
+ .+.+.++|.+..+++|+++.+|..+.++++.++..+|.
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 1 12244555555555555555555555555555555554
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.66 E-value=4.4e-15 Score=132.02 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=114.6
Q ss_pred hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 398 (587)
..++.+...+.|+++.+|..++..++.+.. +..+|.+...+.|+++.+|..++.+|+.+.. +..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA 82 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence 345556666666666666666666665542 2345556666666666666666666666542 234
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 478 (587)
+|.+...+.|+++.+|..++..++.+.. . ..++.+..++.|+++.||..|+.+|+.+.. ...++
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 146 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD----E----RAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 146 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence 5556666666677777776666665421 1 134555666677777777777777766521 23566
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
.+..+++|+++.+|..++.+++.+.. +...+.+..+++|+++.||..+..+|..+....
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 66666777777777777777777643 455666666677777777777777777766543
No 50
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.9e-13 Score=136.35 Aligned_cols=478 Identities=9% Similarity=0.063 Sum_probs=304.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh----cCCCCcchhhHHhhhHhhcCCCChH-----HHHHHHH
Q 007842 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPDI-----LKTELRS 166 (587)
Q Consensus 96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~ 166 (587)
..+.+.||-.++-.+.++.+..+ +.+.+.+..++..+. .+-.......++..+..++|-.+.- ..+.+.+
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~ 258 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSK 258 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHH
T ss_pred ccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHH
Confidence 34567889888888888776655 556777777777555 2212344556777778888877542 1234456
Q ss_pred HHHHhc-CCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhhhhchH
Q 007842 167 IYTQLC-QDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHIL 243 (587)
Q Consensus 167 ~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~ 243 (587)
.+.... ...+..+..++.+.+...+..-.- +.+.+...+.+..++++ +.+|..|+-+|..+...-+. +.....+.
T Consensus 259 ~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La 336 (778)
T 3opb_A 259 LFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS 336 (778)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 666544 445667777777777665543111 23445567888888865 46788888888888765432 22234578
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHhC--CCc-cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 007842 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-TRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQH 319 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
+.+.+.+.+++...|..|++.|+.+...-. ... ....+++.++.++++ .+..+-.+++..+..+....+.......
T Consensus 337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 888888877666669999999987753100 001 123468888888885 5677888888888888875432100000
Q ss_pred HhHHHHHhccCC--------cHHHHHHHHHH--HHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh
Q 007842 320 ILPCVKELSSDS--------SQHVRSALASV--IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 320 i~~~l~~~~~d~--------~~~vr~~a~~~--l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (587)
=+..+.++.+.. +..-...-... ...+ ....++|.+..++++.++.+|..++++|..++..-
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l--------~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI--------LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp ------------------CCTHHHHHHHHHHHHHHHT--------TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG
T ss_pred hhhhhhhhccccCcccCcccccccchHHHHHHHHHHH--------HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 111222222110 10000000000 0011 11246888999999999999999999999998653
Q ss_pred chh--hHHhhHHHHHHHHhcCCChH---HHHHHHHHHHHHHHhhChhhhH-----HHHHHHHHHhcCC-Cch--------
Q 007842 390 GID--LLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD-KVY-------- 450 (587)
Q Consensus 390 ~~~--~~~~~~l~~l~~~~~~~~~~---vR~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------- 450 (587)
... ...+..+|.+..++.+.... .|..++.++..+.-...+.... ...+|.+..++.. +..
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 221 23356788888887765433 8999999999987543322210 1467778888872 221
Q ss_pred -----HHHHHHHHHHHHHHHHhCh---H----HHh-hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHH--
Q 007842 451 -----SIRDAAANNLKRLAEEFGP---E----WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITC-- 512 (587)
Q Consensus 451 -----~vr~~a~~~l~~l~~~~~~---~----~~~-~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~-- 512 (587)
--+..|+.+|.+++..-+. + .+. ...+|.+.+++.+.+..+|.+|++++.+++..-.. +++.
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 2277899999999875421 1 233 25889999999999999999999999999863321 2210
Q ss_pred ----hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHH-hhHHHHHHHhcCC--CCccHHHHHHHHHHHHHH
Q 007842 513 ----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVE-KTIRPCLVELTED--PDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 513 ----~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~-~~i~~~l~~l~~d--~d~~Vr~~a~~al~~l~~ 582 (587)
..-++.++.+++..+..+|.+|+.+|..+....+. .... ...++.+..++.+ ++.++|.++..++..+.+
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 11378899999999999999999999998643322 1222 2466677777777 899999999999999987
Q ss_pred hh
Q 007842 583 VM 584 (587)
Q Consensus 583 ~~ 584 (587)
+.
T Consensus 729 ~~ 730 (778)
T 3opb_A 729 VI 730 (778)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 51
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.64 E-value=1e-11 Score=134.24 Aligned_cols=523 Identities=12% Similarity=0.088 Sum_probs=314.8
Q ss_pred cHHHHHHHhhcHHHHHHhhChH-------hhhhhhhhhhhhcc--CCcHHHHHHHHHHhccccccCCCcchHhhhHHHHh
Q 007842 22 DIQLRLNSIRRLSTIARALGEE-------RTRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92 (587)
Q Consensus 22 ~~~~R~~a~~~l~~~~~~~~~~-------~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 92 (587)
+..+|..|+..+....+.++++ ..++.++.++.... .+..-+|..++.++..++.... +..++.+++.+.
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~-p~~Wp~~i~~l~ 134 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY-PSNWNDFFASLQ 134 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT-TTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC-cccCchHHHHHH
Confidence 7889999998888665555443 23446666666532 3455788888888877765322 244556666665
Q ss_pred hhhcchhh-HHHHHHHHHHHHHHhhcCh-----------------h--------hHHhhHHHHHHHHhcCCCCcchhhHH
Q 007842 93 TLCTVEET-CVRDKAVESLCRIGSQMRE-----------------S--------DLVDWYIPLVKRLAAGEWFTARVSAC 146 (587)
Q Consensus 93 ~l~~~~~~-~vr~~a~~~l~~l~~~~~~-----------------~--------~~~~~l~~~l~~l~~~~~~~~r~~a~ 146 (587)
.++..++. ..-...++.|..+.+.+.. + .+.+.+..++...........+..++
T Consensus 135 ~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L 214 (980)
T 3ibv_A 135 GVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCL 214 (980)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 55544333 3334445555544443311 0 01222333333333323444556677
Q ss_pred hhhHhhcCCCChH--HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHH------HHHhhh-CCchh
Q 007842 147 GLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI------FEDLTQ-DDQDS 217 (587)
Q Consensus 147 ~~l~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~------l~~l~~-d~~~~ 217 (587)
..++....-.+.. ....+++.+..++.+ +.+|..++++|..++..-.++.....++.. +..+.. +++.+
T Consensus 215 ~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d 292 (980)
T 3ibv_A 215 QVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN 292 (980)
T ss_dssp HHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHH
T ss_pred HHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHH
Confidence 7777777665544 336788888888876 799999999999998875442222222222 222222 34445
Q ss_pred HHHHHHHHHHHHhhh------cC----h------hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---C-Ccc
Q 007842 218 VRLLAVEGCAALGKL------LE----P------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---P-EPT 277 (587)
Q Consensus 218 vr~~a~~~l~~l~~~------~~----~------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~-~~~ 277 (587)
+++..++.+..++.. .+ . ......+++.+..+..++++.|-..+...+..+..... . ...
T Consensus 293 ~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~ 372 (980)
T 3ibv_A 293 FDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL 372 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 555444444333322 11 0 02345688999999999989888888887777765432 1 001
Q ss_pred cc-------chHHHHHHhcC-------CC----h-----HHHHHHHHHhHHHHHhhhCHHHHHH----hHhHHHHHhc--
Q 007842 278 RM-------DLVPAYVRLLR-------DN----E-----AEVRIAAAGKVTKFCRILNPELAIQ----HILPCVKELS-- 328 (587)
Q Consensus 278 ~~-------~l~~~l~~~l~-------d~----~-----~~vr~~a~~~l~~l~~~~~~~~~~~----~i~~~l~~~~-- 328 (587)
.. .+++.+.+-+. |. + .+.|+... .+......++++.+.+ .+.+.+.+.+
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 11 23333333221 11 1 24666666 6666677778877666 5666665555
Q ss_pred -cCCcHHHHHHHHHHHHccccccchh--------HHHHhHHHHHHHhhc-----CCChHHHHHHHHhhhhhhhhhchh-h
Q 007842 329 -SDSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID-L 393 (587)
Q Consensus 329 -~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~ 393 (587)
.+.+|+.+++++.+++.+++.+... ...+.+++.+..+++ +..+.||..+++.+++..+.+..+ .
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~ 531 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA 531 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence 3567999999999999998876421 123456777777765 788999999999999999887643 3
Q ss_pred HHhhHHHHHHH--HhcCCChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCC---C------------------
Q 007842 394 LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---K------------------ 448 (587)
Q Consensus 394 ~~~~~l~~l~~--~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---~------------------ 448 (587)
+.+.+++.+.. .+.+++.++|..+..++..+++..+... +.+.++..+..++.- +
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 611 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS 611 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence 34455555555 5567889999999999999998875422 223344444333431 0
Q ss_pred chHHHHHHHHHHHHHHHHhCh--H---HHhhhhHHHH----HhhccCC----chhHH-HHHHHHHHHhhcccCh------
Q 007842 449 VYSIRDAAANNLKRLAEEFGP--E---WAMQHITPQV----LEMINNP----HYLYR-MTILRAISLLAPVMGS------ 508 (587)
Q Consensus 449 ~~~vr~~a~~~l~~l~~~~~~--~---~~~~~l~~~l----~~~l~d~----~~~~R-~~a~~~l~~l~~~~~~------ 508 (587)
..+-+....+++|.++...+. + .+.+.+++.+ ...+... +...+ ...+.+++.+++.+..
T Consensus 612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~ 691 (980)
T 3ibv_A 612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEV 691 (980)
T ss_dssp THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCC
T ss_pred CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 123466788888988877652 2 1223333332 2223221 11122 2567788888876532
Q ss_pred --HHHHhhHHHHHHhhcC--CCChhHHHHHHHHHHHhhhhhchH
Q 007842 509 --EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 509 --~~~~~~il~~l~~~l~--d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
......+++.+...+. ..+..||.++..++.+++..+|.+
T Consensus 692 p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~ 735 (980)
T 3ibv_A 692 AWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD 735 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh
Confidence 1234456666655554 457899999999999999998876
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.64 E-value=1.8e-14 Score=126.88 Aligned_cols=183 Identities=21% Similarity=0.222 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccc
Q 007842 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD 280 (587)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ 280 (587)
+...+.+..+++|+++.+|..++..|+.+.. +...+.+.+.+.|+++.+|..++..++.+. ...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHH
Confidence 3344444445555555555555555544332 123444444445555555555555554432 123
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHH
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 360 (587)
.++.+..++.|+++.||..++.+|+.+.. +..++.+..++.|+++.||..++.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 44555555555555555555555544422 1234444444555555555555555554431 1234
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 007842 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (587)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~ 423 (587)
+.+..+++|.++.||..++.+|+.+.. +..++.+..+++|+++.+|..+.+.++.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444555555555555555555554421 2334444444445555555555444443
No 53
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.63 E-value=9.4e-13 Score=131.73 Aligned_cols=344 Identities=15% Similarity=0.155 Sum_probs=230.5
Q ss_pred hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-
Q 007842 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 314 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 314 (587)
.+.-+|.+.+++..+++.++..|+.+|..++..-. ........+|.++.++++.+..++..|+.+|..++..-+.+
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 34456777777777778888888888777764110 01122346788888888888888888888888887531121
Q ss_pred ---HHHHhHhHHHHHhccC-CcHHHHHHHHHHHHccccccc-hhHHHHhHHHHHHHhhc------------------CCC
Q 007842 315 ---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLK------------------DEF 371 (587)
Q Consensus 315 ---~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~------------------d~~ 371 (587)
......+|.+..++.+ .+..++..++.+|..++..-. +..+....+|.+.+++. ..+
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 2223467777777775 567788888888888775321 22233345666666541 124
Q ss_pred hHHHHHHHHhhhhhhhhhc--hhhHH--hhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHhh-------------
Q 007842 372 PDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQL------------- 428 (587)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~--~~~~~--~~~l~~l~~~~~------~~~~~vR~~~~~~l~~l~~~~------------- 428 (587)
.+|+..+..+|..++..-. ...+. ..+++.+..++. +.+.+....++.++..++...
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 6888888888888875321 11111 234445555443 345566676777666655331
Q ss_pred --------------Chhh-hHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCh---H---HH-hhhhHHHHHhhcc
Q 007842 429 --------------GVGF-FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---E---WA-MQHITPQVLEMIN 485 (587)
Q Consensus 429 --------------~~~~-~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~---~~-~~~l~~~l~~~l~ 485 (587)
|.+. +....++.++.++. ..+..++++|+.+|..++..-+. . .+ ....+|.|.+++.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1111 22345677788875 45799999999999999742111 1 11 2456999999999
Q ss_pred CCchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHhhcCCC--------ChhHHHHHHHHHHHhhhhhch---HHHHhh
Q 007842 486 NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQ---SMVEKT 553 (587)
Q Consensus 486 d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~--------~~~vR~~~~~~l~~l~~~~~~---~~~~~~ 553 (587)
+++..++..++.+|++++..... ..+....+|.++.+|.+. +..++..++.+|+++...-.. ......
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g 445 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ 445 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 99999999999999999875443 334677899999999876 357899999999998754222 234467
Q ss_pred HHHHHHHhcCCC--CccHHHHHHHHHHHHHH
Q 007842 554 IRPCLVELTEDP--DVDVRFFATQAIQSIDH 582 (587)
Q Consensus 554 i~~~l~~l~~d~--d~~Vr~~a~~al~~l~~ 582 (587)
.+|.|..++.+. .+.++..|+.+|..+..
T Consensus 446 ~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 446 GIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 889999988775 78899999999998864
No 54
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.62 E-value=6.8e-12 Score=130.00 Aligned_cols=330 Identities=14% Similarity=0.060 Sum_probs=226.4
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhcc---CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh
Q 007842 217 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE 293 (587)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~---d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~ 293 (587)
..+-.|..+++.|-..-. ...+..+.+.+. ..++.+|..|+.++|.+....+. ..+..+...+.+.+
T Consensus 373 ~~k~sA~aSLGlIh~g~~-----~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~ 442 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNL-----LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENS 442 (963)
T ss_dssp HHHHHHHHHHHHHTSSCT-----TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhccCch-----HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCcc
Confidence 346677777887754332 233555555554 56789999999999987654432 35566666565433
Q ss_pred --------HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHH
Q 007842 294 --------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 365 (587)
Q Consensus 294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 365 (587)
+.+|.+|+.+|+.+.-..+++ .+++.|...+.|.+..+|..++.+++.+.-.-|.....+.++..+
T Consensus 443 ~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~-- 516 (963)
T 4ady_A 443 GTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS-- 516 (963)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH--
Confidence 679999999999875544443 345666666666777788888888887744334444444444443
Q ss_pred hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
..+.+..+|..++.+|+.+. +|.+...+.+ +..+..+.+|.+|..++.+++......|.... +-.++..+.
T Consensus 517 -~e~~~e~vrR~aalgLGll~--~g~~e~~~~l---i~~L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~~ 587 (963)
T 4ady_A 517 -QETQHGNITRGLAVGLALIN--YGRQELADDL---ITKMLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVAV 587 (963)
T ss_dssp -HHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHHH
T ss_pred -hccCcHHHHHHHHHHHHhhh--CCChHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHhc
Confidence 35667899999999999763 3333222222 23345688999999998888765554554332 223444455
Q ss_pred CCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC
Q 007842 446 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK 524 (587)
Q Consensus 446 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~ 524 (587)
.|.+..||.+|+.+|+.+.- |. +...+.++. +..+.++.+|..+..++|.+...-+. ..++..|.++.+
T Consensus 588 ~d~~d~VRraAViaLGlI~~--g~----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~ 657 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLL--RD----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTK 657 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTS--SS----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHhhcc--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHcc
Confidence 78899999999999997752 22 235666666 45678999999999999999865554 467778889999
Q ss_pred CCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 007842 525 DRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSID 581 (587)
Q Consensus 525 d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d--~d~~Vr~~a~~al~~l~ 581 (587)
|++..||.+|+.+|+.+...-.+. .....++..|.....| .|+++|+.+.-|.|.+.
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 999999999999999998653332 1234555555565544 67889999999999875
No 55
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.61 E-value=9.5e-11 Score=121.57 Aligned_cols=272 Identities=13% Similarity=0.034 Sum_probs=189.1
Q ss_pred chHHHHHHhcC---CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCc--------HHHHHHHHHHHHcccc
Q 007842 280 DLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS--------QHVRSALASVIMGMAP 348 (587)
Q Consensus 280 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~ 348 (587)
..+..+.+.+. +.++.+|.+|+.+++.+....+.+ ++..|...+.+.+ +.+|..++-.|+.+.-
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 35666666665 567899999999999988766653 2344444444333 7899999999988765
Q ss_pred ccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 007842 349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (587)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~ 428 (587)
..+.+ .+.+.+...+.+.+..++..++.+++.+.---|.+...+.++..+ ..+.+..+|..++..++.+. +
T Consensus 467 GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~ 537 (963)
T 4ady_A 467 GSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--Y 537 (963)
T ss_dssp TCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--T
T ss_pred CCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--C
Confidence 44443 345556666677777888888888887744334443334444443 34667788888888888763 3
Q ss_pred ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh
Q 007842 429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 429 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
|.....+.++..+ ..+.++-+|..++.+++.-+...|.....+.++.. +.+|++..+|.+|+.+|+.+...-.
T Consensus 538 g~~e~~~~li~~L---~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 538 GRQELADDLITKM---LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp TCGGGGHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred CChHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCH-
Confidence 4443334343333 35789999999999998777666654333333333 3467788899999999998764321
Q ss_pred HHHHhhHHHHHHh-hcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 509 EITCSRLLPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 509 ~~~~~~il~~l~~-~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
+. .|.++. +.++.++.||..++.+++.++...+. ..++..|..++.|+|..||..|..||+.++
T Consensus 611 ----e~-v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 611 ----TT-VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp ----SS-HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred ----HH-HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 22 334444 55678999999999999999765443 357778899999999999999999999876
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.60 E-value=2.9e-13 Score=124.14 Aligned_cols=226 Identities=13% Similarity=0.088 Sum_probs=157.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh---Chhhh
Q 007842 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFF 433 (587)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~---~~~~~ 433 (587)
+|.+..++++.++++|..++.+|..++...... ......+|.+.+++.++++.+|..++.++..++..- .....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 455666666666666666666666665433211 112345666667777777777777777776665421 01111
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--
Q 007842 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-- 508 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~-- 508 (587)
....+|.+..++.+++..+|..|+.+|+.++... .........+|.+.+++.++++.+|..++.++++++.....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 2235777888888888999999999998887421 11123346788999999999999999999999999864322
Q ss_pred -HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842 509 -EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 509 -~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~ 584 (587)
......++|.+..+++++++.+|..++.+|++++...+. ......+++.|.+++.++++++|..|..+|..+...-
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 123456889999999999999999999999999863222 1234567899999999999999999999999998754
Q ss_pred c
Q 007842 585 M 585 (587)
Q Consensus 585 ~ 585 (587)
.
T Consensus 244 ~ 244 (252)
T 4hxt_A 244 W 244 (252)
T ss_dssp B
T ss_pred C
Confidence 3
No 57
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.59 E-value=1.8e-11 Score=135.27 Aligned_cols=490 Identities=9% Similarity=0.021 Sum_probs=296.8
Q ss_pred HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhh----cCCCChH
Q 007842 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YPSAPDI 159 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~----~~~~~~~ 159 (587)
...+...+..+. +++...|+.|-..|.++-+. + .....+..++. .+.+..+|..|+..+... +..++++
T Consensus 15 ~~~l~~~l~~~~-~p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 15 IALLDQVVSTFY-QGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHHHh-CCChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 334444454444 33344677777777766433 1 22333333332 234556676666655433 2345555
Q ss_pred HHH----HHHHHHHHhcCCC-----ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842 160 LKT----ELRSIYTQLCQDD-----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (587)
Q Consensus 160 ~~~----~l~~~l~~l~~d~-----~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
.+. .+++.+.....++ ++.+|..++.++..++..-.+ ..++.+++.+....+ .++..+..+..+|..+.
T Consensus 88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 444 4444444433232 478999999999999988544 345677777777775 44556777777887776
Q ss_pred hhcCh---------------h---hhhhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHH-hc
Q 007842 231 KLLEP---------------Q---DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVR-LL 289 (587)
Q Consensus 231 ~~~~~---------------~---~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~-~l 289 (587)
+.+.. . ...+.+++.+.+++++ .+..++..+++++..+....+... ....+++.+.+ ++
T Consensus 166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245 (1049)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC
Confidence 54321 0 0123344555555443 457789999999887765443221 22456676663 33
Q ss_pred CCChHHHHHHHHHhHHHHHhhh-CHH-----HHH----HhHhHHHHH--------------hccCCcHHHHHHHHHHHHc
Q 007842 290 RDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKE--------------LSSDSSQHVRSALASVIMG 345 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~----~~i~~~l~~--------------~~~d~~~~vr~~a~~~l~~ 345 (587)
. ++.+|..++.++..+...- ++. ... +.++..+.. ...+.++.+....++.+..
T Consensus 246 ~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 246 T--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp H--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred C--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence 3 6889999999999887652 221 111 112222211 1134456666666666655
Q ss_pred cccccc--------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh----c-hh---hHHhhHHHHHHHHhc--
Q 007842 346 MAPLLG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G-ID---LLSQSLLPAIVELAE-- 407 (587)
Q Consensus 346 l~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~-~~---~~~~~~l~~l~~~~~-- 407 (587)
++.... .......+++.+......++.+++..++..+..+.+.+ . .. .+...+++.+...+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ 403 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP 403 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 543211 12234556777777777778899999988888777632 1 11 222344444444321
Q ss_pred -CC-------------------ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Q 007842 408 -DR-------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAE 465 (587)
Q Consensus 408 -~~-------------------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~ 465 (587)
|. .|..|.++...+..++.. ++....+.+.+.+...+. ..+|..|++++.+++.+..
T Consensus 404 ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~ 482 (1049)
T 3m1i_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG 482 (1049)
T ss_dssp TTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTT
T ss_pred cceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 11 124566777777777754 344444556666666664 4789999999999998876
Q ss_pred HhChH---HHhhhhHHHHHhhcc-----CCchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHhhcCCCChhHHHHHHH
Q 007842 466 EFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAK 536 (587)
Q Consensus 466 ~~~~~---~~~~~l~~~l~~~l~-----d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~ 536 (587)
..+.. .+...+++.+..+.. ++.+.+|..++++++.+...+.. ..+...+++.+...+.|+++.||..|+.
T Consensus 483 ~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~ 562 (1049)
T 3m1i_C 483 TMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD 562 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 55443 234455555554322 34566776799999988764332 2356778888888999999999999999
Q ss_pred HHHHhhhhhchH----------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 537 VLQSLIPIVDQS----------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 537 ~l~~l~~~~~~~----------~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
++..++...+.. .+.+.++..+..+..+.+.+-.....+|++.+....+
T Consensus 563 al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 999999876643 3345666666666677666667777788887765543
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.58 E-value=4.8e-13 Score=133.27 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=109.4
Q ss_pred HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCh-------HHH-hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842 435 DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP-------EWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (587)
Q Consensus 435 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-------~~~-~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~ 505 (587)
...++.+..++.+ .+..++++|+.+|+.++...+. ..+ ....+|.+.+++.+++..+|..|+.++.+++..
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 4456667777654 4689999999999999753222 112 246889999999999999999999999999864
Q ss_pred cCh-HHHHhhHHHHHHhhcCCCCh------hHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCC-CccHHHHHH
Q 007842 506 MGS-EITCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDP-DVDVRFFAT 574 (587)
Q Consensus 506 ~~~-~~~~~~il~~l~~~l~d~~~------~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~-d~~Vr~~a~ 574 (587)
-.. ..+....+|.+++++.++++ .+...++.++.++...-... ......+|.|.+++... ..+++..|.
T Consensus 362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 322 22356789999999987644 57889999999987543222 22346788888888877 889999999
Q ss_pred HHHHHHH
Q 007842 575 QAIQSID 581 (587)
Q Consensus 575 ~al~~l~ 581 (587)
..|..+.
T Consensus 442 ~~L~~~~ 448 (457)
T 1xm9_A 442 LLLSDMW 448 (457)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 9887664
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.56 E-value=5.1e-11 Score=131.75 Aligned_cols=508 Identities=8% Similarity=0.037 Sum_probs=299.4
Q ss_pred cccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCcch
Q 007842 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVEH 83 (587)
Q Consensus 8 ~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~~~ 83 (587)
+..+..+++.+.+++...|.+|-..|..+ +. .| ..+..+...+.. +.+.++|..++..+.+.+.. +. .+.
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~-~~-~p-~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~-~~~ 88 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKF-QD-NP-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLP-NDH 88 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HH-ST-TGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSC-HHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHH-Hh-Cc-hHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCC-HHH
Confidence 34577888888888888999999888764 22 22 223333333332 34678888888888765531 22 122
Q ss_pred Hhhh----HHHHhhhhcch-----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcC
Q 007842 84 AHVL----LPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (587)
Q Consensus 84 ~~~l----~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (587)
...+ ++.+.....++ ++.+|.....++..++....++. +..+++.+.+.... ....+..++.++..+.
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-Wp~ll~~L~~~~~~-~~~~~~~~l~~L~~l~- 165 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSS-SVNVCENNMIVLKLLS- 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHTT-CHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHHcc-ChHHHHHHHHHHHHHH-
Confidence 2223 33332222222 37788888888888888766643 56666666655542 1112222222221111
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhhhc
Q 007842 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~ 233 (587)
+-+.....+....-|..-.+ ..+.. ..+.+++.+...+.+ .+..++..+++++.......
T Consensus 166 -----------eev~~~~~~~~~~~r~~~lk--~~l~~------~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi 226 (1049)
T 3m1i_C 166 -----------EEVFDFSAEQMTQAKALHLK--NSMSK------EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI 226 (1049)
T ss_dssp -----------HHHHTSCTTTSCHHHHHHHH--HHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred -----------HHHHHhcchhhhhHHHHHHH--HHHHH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence 11111101111111111100 01111 124455555555543 34678889999998877766
Q ss_pred Chh-hhhhchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHh-CCCc--cccc-------hHHHHHH--------------
Q 007842 234 EPQ-DCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAV-GPEP--TRMD-------LVPAYVR-------------- 287 (587)
Q Consensus 234 ~~~-~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~-~~~~--~~~~-------l~~~l~~-------------- 287 (587)
+.. ...+.+++.+.+ +.. ++.+|..+++++..++..- ++.. .... ++..+..
T Consensus 227 ~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~ 304 (1049)
T 3m1i_C 227 PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA 304 (1049)
T ss_dssp CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred CHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc
Confidence 643 233456666653 332 6789999999999888652 1110 0011 1221111
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhhC--------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc-----ch--
Q 007842 288 LLRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-----GK-- 352 (587)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-----~~-- 352 (587)
..+|.+.+.....++.+..+++... .......+++.+......++..++..+++.+..+++.. ..
T Consensus 305 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~ 384 (1049)
T 3m1i_C 305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHI 384 (1049)
T ss_dssp HTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGG
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 1134556666666666655544321 12234556777777777778889988888877776521 11
Q ss_pred -hHHHHhHHHHHHHhhcCC-------------------C---hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc--
Q 007842 353 -DATIEQLLPIFLSLLKDE-------------------F---PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-- 407 (587)
Q Consensus 353 -~~~~~~l~~~l~~~l~d~-------------------~---~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-- 407 (587)
..+...+++.+...+.-+ + .+.|..+...|..++... .....+.+.+.+.+.+.
T Consensus 385 ~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~ 463 (1049)
T 3m1i_C 385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGS 463 (1049)
T ss_dssp GHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCC
Confidence 234556666666554211 0 134556667777776443 34444666777777664
Q ss_pred CCChHHHHHHHHHHHHHHHhhChh---hhHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHH
Q 007842 408 DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITP 478 (587)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~ 478 (587)
..+|+.|.+++.+++.++..++.. .+.+.+++.+..+.. |+.+.||..++.+++.+.+.+... .+...+++
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 478999999999999988765433 234556666655432 355667767888888887654332 24567788
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcccChH----------HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSE----------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~----------~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
.+++.+.++++.+|..|+.++..++..++.. .+.+.++..+...+.+....-+..+.++++.++...+
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 8888889999999999999999999877654 2356666666677777666677888999999988776
No 60
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.56 E-value=1.8e-13 Score=125.51 Aligned_cols=223 Identities=16% Similarity=0.126 Sum_probs=166.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhh
Q 007842 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF 433 (587)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~ 433 (587)
.+.+...++++++++|..++.+|..+...-.. .......+|.+.+++.++++.+|..++.++..++.... ....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56677777788888888888888665543111 11224567888888888888888888888887764211 1112
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH-
Q 007842 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE- 509 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~- 509 (587)
....+|.+..++.++++.+|..|+.+|+.+...... .......+|.+.+++.++++.+|..++.++++++......
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 233688899999999999999999999998753222 1234568999999999999999999999999998643221
Q ss_pred --HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 510 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.....++|.+..+++++++.+|..++.+|++++...+. ......++|.|.+++.+.++++|..|..+|..+++
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12356789999999999999999999999999853222 12345688999999999999999999999998764
No 61
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.54 E-value=1.6e-11 Score=122.82 Aligned_cols=341 Identities=15% Similarity=0.116 Sum_probs=201.3
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC----Cc
Q 007842 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EP 276 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~----~~ 276 (587)
+|.+..++...++.++..|+..+..++..-.+ .....-.+|.+.+++.+++..++..|+.+|..++..-+. ..
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 34444444444444454444444444421111 111223455566666666666666666666665531000 11
Q ss_pred cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCH-HHHHHhHhHHHHHhc------------------cCCcHHHH
Q 007842 277 TRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELS------------------SDSSQHVR 336 (587)
Q Consensus 277 ~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~------------------~d~~~~vr 336 (587)
.....+|.++.++.+ .+.+++..++.+|..++..-.. ..+....+|.|.+++ ...+..|+
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 122356666666664 4566666666666666552211 122233445555443 11245777
Q ss_pred HHHHHHHHccccccc--hhHHH--HhHHHHHHHhhc------CCChHHHHHHHHhhhhhhhhh-----------------
Q 007842 337 SALASVIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVI----------------- 389 (587)
Q Consensus 337 ~~a~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~----------------- 389 (587)
..++.+|.+++..-. ..... .-+++.++.+++ +.+....+.++.+|..++...
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~ 289 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV 289 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccc
Confidence 777777777765321 11111 123344444443 234456666666665554321
Q ss_pred ----------chhh-HHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhCh-------hhhHHHHHHHHHHhcCCCch
Q 007842 390 ----------GIDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV-------GFFDDKLGALCMQWLQDKVY 450 (587)
Q Consensus 390 ----------~~~~-~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~-------~~~~~~l~~~l~~~l~d~~~ 450 (587)
|.+. +....++.+..++. ..++.++..++.++..++..-+. .......+|.+..++..++.
T Consensus 290 ~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~ 369 (584)
T 3l6x_A 290 ANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHE 369 (584)
T ss_dssp ------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCH
T ss_pred cccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 1111 11245667777774 56799999999999988643211 11124568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCh-HHHhhhhHHHHHhhccCC--------chhHHHHHHHHHHHhhcccCh---HHHHhhHHHH
Q 007842 451 SIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPVMGS---EITCSRLLPV 518 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~--------~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~ 518 (587)
.|+..|+.+|+++...-.. ..+....+|.+..++.++ +..++..++.+++++...-.. .......+|.
T Consensus 370 ~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~ 449 (584)
T 3l6x_A 370 RVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEK 449 (584)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Confidence 9999999999999874332 234567899999998776 356888999999988643111 1234668999
Q ss_pred HHhhcCCC--ChhHHHHHHHHHHHhhhh
Q 007842 519 VINASKDR--VPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 519 l~~~l~d~--~~~vR~~~~~~l~~l~~~ 544 (587)
+..++.+. .+.++..|+.+|..++.+
T Consensus 450 Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 450 LVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 99999886 889999999999999854
No 62
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.54 E-value=4e-11 Score=129.55 Aligned_cols=491 Identities=10% Similarity=0.121 Sum_probs=289.9
Q ss_pred hhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC--CCcchhhHHhhhHhhcCCCChH--
Q 007842 85 HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYPSAPDI-- 159 (587)
Q Consensus 85 ~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~~~~~-- 159 (587)
..+...+..... +.++..|+.|...|.++-+. ++ .+.....++ .++. +..+|..|+.++......++++
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~-aw~~~~~iL---~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--ST-GWKICHEIF---SEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TT-HHHHHHHHT---TCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hh-HHHHHHHHH---hCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 344444433332 33678888888888776543 21 233222222 1222 4567777777665443344433
Q ss_pred ------HHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCch-hHHHHHHHHHHHHhh
Q 007842 160 ------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGK 231 (587)
Q Consensus 160 ------~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~ 231 (587)
.++.+++.+..... +..+.+|...+.++..++....++ .++.+++-+..+.+..+. ..-...++++..+.+
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 44555555555221 345789999999999999886443 344555555555543322 233445555654444
Q ss_pred hcCh-------h----------h----hhhchHHH----HHHhccCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHH
Q 007842 232 LLEP-------Q----------D----CVAHILPV----IVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAY 285 (587)
Q Consensus 232 ~~~~-------~----------~----~~~~l~~~----l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l 285 (587)
.+.+ + . ..+.+.+. +....+..++.++..+.++++.+....+... ....+++.+
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l 238 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLL 238 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHH
Confidence 4321 0 0 01112333 3333333567888888888888776443221 224688888
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHh------HHHHHhcc-CCcHHHHHHHHHHHHcccccc------c-
Q 007842 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL------PCVKELSS-DSSQHVRSALASVIMGMAPLL------G- 351 (587)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~------~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~------~- 351 (587)
.+++.+ +.+|.+|+++|..+............++ +.+..+.. +.+.++....++.+..++..+ +
T Consensus 239 ~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~ 316 (980)
T 3ibv_A 239 YSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPS 316 (980)
T ss_dssp HHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 888876 7899999999999877543221111112 11222222 456666665655554443221 1
Q ss_pred ---h------hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--------h---hHHhhHHHHHHHHh---cC
Q 007842 352 ---K------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D---LLSQSLLPAIVELA---ED 408 (587)
Q Consensus 352 ---~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~~l~~l~~~~---~~ 408 (587)
. ......++|.++.++.+++.+|-..++..+..+...... + .+...+++.+..-+ .+
T Consensus 317 ~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d 396 (980)
T 3ibv_A 317 ELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDES 396 (980)
T ss_dssp --CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence 0 033557889999999999999988887777766543221 1 12233333333322 11
Q ss_pred CCh-------------HHHHHHHHHHHHHHHhhChhhhHH----HHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHhC
Q 007842 409 RHW-------------RVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQWLQ---DKVYSIRDAAANNLKRLAEEFG 468 (587)
Q Consensus 409 ~~~-------------~vR~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~ 468 (587)
.+| ..|.... .+-.....++++.+.+ .+.+.+.+.+. +.+|..+++++.+++.+.+...
T Consensus 397 ~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~ 475 (980)
T 3ibv_A 397 QEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR 475 (980)
T ss_dssp CCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred cccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcc
Confidence 112 3566655 5555566677777666 56666666553 4679999999999999887554
Q ss_pred hHH--------HhhhhHHHHHhhcc-----CCchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHh--hcCCCChhHHH
Q 007842 469 PEW--------AMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVIN--ASKDRVPNIKF 532 (587)
Q Consensus 469 ~~~--------~~~~l~~~l~~~l~-----d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~--~l~d~~~~vR~ 532 (587)
... ..+.+++.+..+++ ++.+.+|.+++++++.....+.. ..+.+.+++.+.. .+.++++.||.
T Consensus 476 ~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~ 555 (980)
T 3ibv_A 476 GPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRP 555 (980)
T ss_dssp SGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHH
T ss_pred ccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHH
Confidence 211 12345666666544 77899999999999999886543 2355677788888 88889999999
Q ss_pred HHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCC-------CC--------------ccHHHHHHHHHHHHHHhhc
Q 007842 533 NVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED-------PD--------------VDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 533 ~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d-------~d--------------~~Vr~~a~~al~~l~~~~~ 585 (587)
+++.++..+++..+.. .+.+.++..+..++.- .| .+-+.+..+|++.+....+
T Consensus 556 ~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 556 RAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp HHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 9999999999877653 3344555555554331 11 2246677777777776543
No 63
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.1e-11 Score=119.58 Aligned_cols=483 Identities=11% Similarity=0.099 Sum_probs=289.5
Q ss_pred HHHHHHH--hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-----C-CcHHH---HHHHHHHhccccccCC
Q 007842 11 IAVLIDE--LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-----D-DDDEV---LLAMAEELGVFIPYVG 79 (587)
Q Consensus 11 ~~~l~~~--l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-----~-~~~~v---~~~~~~~l~~l~~~~~ 79 (587)
++.|+.. ++...+++|-.++-.+..+-... ++.+.+.+.-++.... + ++++. ...++...+ +++-+.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfP-i~p~~~ 247 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYP-SLTTLC 247 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTT-TTHHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhc-CCHHHH
Confidence 4555555 45778889988887777654433 3455555555554322 1 12222 222222222 111111
Q ss_pred Ccch-HhhhHHHHhhhh-cchhhHHHHHHHHHHHHHHhhcC-hhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCC
Q 007842 80 GVEH-AHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (587)
Q Consensus 80 ~~~~-~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~ 156 (587)
..-+ ...+.+.+...+ +.++..+..++++.+...|..-. .+.+.+...|++.++.+++ ..|..|+..+..++...
T Consensus 248 s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~--~ir~lAavvL~KL~~~~ 325 (778)
T 3opb_A 248 SEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVE--DVQIYSALVLVKTWSFT 325 (778)
T ss_dssp HHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSG--GGHHHHHHHHHHHTGGG
T ss_pred HHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccH--HHHHHHHHHHHHHhcCC
Confidence 0000 012344444333 34556666777777776653211 2344566778888888663 56666666666655422
Q ss_pred --ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-ch--hhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHh
Q 007842 157 --PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH--LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALG 230 (587)
Q Consensus 157 --~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~--~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~ 230 (587)
.......+.+.+...+.+++...|+.+++.|..+...-.. +. ..+.+++.+..++++ ++..+-..++.++..+.
T Consensus 326 ~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 326 KLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS 405 (778)
T ss_dssp TCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 2234566888898888887666799999999988643211 11 123456667777774 56678888899999888
Q ss_pred hhcChhh----hhhchHHHHHHhc----cCCcHHHHHHHHHHHHH-HHHHhCCCccccchHHHHHHhcCCChHHHHHHHH
Q 007842 231 KLLEPQD----CVAHILPVIVNFS----QDKSWRVRYMVANQLYE-LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301 (587)
Q Consensus 231 ~~~~~~~----~~~~l~~~l~~~~----~d~~~~vR~~a~~~l~~-~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 301 (587)
...+... ...++.++...-. .++++. ..... +.. -...+ .....+|.+..++++.++.+|..++
T Consensus 406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~--~~~~~-v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~ 478 (778)
T 3opb_A 406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK--AAKED-ILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVV 478 (778)
T ss_dssp CCCCCCCCCCC------------------CCTHH--HHHHH-HHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhccccCcccCcccccc--cchHH-HHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHH
Confidence 7654311 1222222222110 001111 11111 111 11111 2346899999999999999999999
Q ss_pred HhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHH---HHHHHHHHHHccccccchhHHH-----HhHHHHHHHhhcC-C
Q 007842 302 GKVTKFCRILNPE--LAIQHILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-E 370 (587)
Q Consensus 302 ~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~---vr~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~ 370 (587)
+++..++..-... ......++.+..++.+.... +|..|+.+|.++.....+.... -..+|.+..+|.. .
T Consensus 479 ~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~ 558 (778)
T 3opb_A 479 RIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRST 558 (778)
T ss_dssp HHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSS
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCC
Confidence 9999998653222 23345678888887766544 8999999998887443322211 1567888899872 2
Q ss_pred Ch-------------HHHHHHHHhhhhhhhhhch------hhHHh--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 007842 371 FP-------------DVRLNIISKLDQVNQVIGI------DLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 371 ~~-------------~vr~~a~~~l~~l~~~~~~------~~~~~--~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~ 429 (587)
.. --+..|+.+|.+++..-+. ..+.. ..+|.+.+++.+++..+|.++++.+..++..-.
T Consensus 559 ~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 559 PVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp SCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred CcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence 11 1266788888888865421 22222 578999999999999999999999999886432
Q ss_pred ---hhhhH---HH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh--H-HHh-hhhHHHHHhhccC--CchhHHHH
Q 007842 430 ---VGFFD---DK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--E-WAM-QHITPQVLEMINN--PHYLYRMT 494 (587)
Q Consensus 430 ---~~~~~---~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~-~~l~~~l~~~l~d--~~~~~R~~ 494 (587)
..++. +. -++.++.++...+..+|.+|..+++.+...... . ... ...++.+..++.+ ++..+|..
T Consensus 639 ~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R 718 (778)
T 3opb_A 639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQR 718 (778)
T ss_dssp GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHH
Confidence 12221 11 267788889999999999999999988643221 1 112 2467777777777 78889999
Q ss_pred HHHHHHHhhc
Q 007842 495 ILRAISLLAP 504 (587)
Q Consensus 495 a~~~l~~l~~ 504 (587)
++.++.+++.
T Consensus 719 ~~~~l~NL~~ 728 (778)
T 3opb_A 719 LLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.52 E-value=2.1e-12 Score=118.32 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=116.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhh
Q 007842 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGF 432 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~ 432 (587)
.+|.+..++++.++++|..++.+|..++..-.. .......+|.+..++.++++.+|..++.++..++.... ...
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444444444444444444432100 01112344555555555555555555555555542110 011
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh-
Q 007842 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS- 508 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~- 508 (587)
.....+|.+..++.++++.+|..++.+++.++..... .......+|.+..++.++++.+|..++.++++++.....
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1223567777888888888888888888888752211 123356788999999999999999999999999863221
Q ss_pred --HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 509 --EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 509 --~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
......+++.+.++++++++.+|..++.+|.++....+
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 11245678999999999999999999999999987643
No 65
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.7e-13 Score=118.69 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=105.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhh-hhhhhch-h---hHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhC-hh
Q 007842 359 LLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGI-D---LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG-VG 431 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~-~---~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~-~~ 431 (587)
+-+-+...+.+.++.-|..++..+.. ++..... . .-...++..+...+ +|.+..+|..++.+++.++..++ +.
T Consensus 17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 33445555666666666666666665 5532211 0 01134455555555 56666666666666666666555 33
Q ss_pred h---hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842 432 F---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (587)
Q Consensus 432 ~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~ 505 (587)
+ |...++|.++..++|....||.++..++..++...++.. ..+.+++.+...+++++|.+|+.++.+++.+...
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2 233455666666666666666666666666666543211 1345566666666666666666666666666665
Q ss_pred cCh--H---HHH-hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 506 MGS--E---ITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 506 ~~~--~---~~~-~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
.+. . .+. +.++|.+.+++.|+++.||..+.++++.++..+|.+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 552 1 234 556666666666666666666666666666666554
No 66
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.52 E-value=6.7e-12 Score=124.98 Aligned_cols=148 Identities=12% Similarity=0.043 Sum_probs=108.1
Q ss_pred hHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChh-------hh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842 397 SLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-------FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (587)
Q Consensus 397 ~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~-------~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
..++.+..++. .+++.++..++.++..++..-+.. .+ ....+|.+..++.+++..+|..|+.+|.++...-
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 45666667665 456899999999998886432210 11 1245789999999999999999999999997632
Q ss_pred Ch-HHHhhhhHHHHHhhccCCch------hHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCC-ChhHHHHHHH
Q 007842 468 GP-EWAMQHITPQVLEMINNPHY------LYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDR-VPNIKFNVAK 536 (587)
Q Consensus 468 ~~-~~~~~~l~~~l~~~l~d~~~------~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~-~~~vR~~~~~ 536 (587)
.. ..+....+|.+.+++..++. .+...++.+++++...-.... .....++.+..+++++ +..++..|+.
T Consensus 363 ~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 21 12345688999999887643 577788899998875433211 1246789999999998 9999999999
Q ss_pred HHHHhhhh
Q 007842 537 VLQSLIPI 544 (587)
Q Consensus 537 ~l~~l~~~ 544 (587)
.|.+++.+
T Consensus 443 ~L~~~~~~ 450 (457)
T 1xm9_A 443 LLSDMWSS 450 (457)
T ss_dssp HHHTTSSS
T ss_pred HHHHHHcc
Confidence 99988753
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.50 E-value=1.9e-12 Score=118.54 Aligned_cols=225 Identities=14% Similarity=0.105 Sum_probs=152.1
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch--h
Q 007842 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D 353 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~ 353 (587)
..-.+.+...+.++++++|..++.++..+...-.+ ......++|.+.+++.++++.+|..++.++..++...+. .
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34578888888888899999999999765543111 122345788899999999999999999999998863221 1
Q ss_pred H-HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 007842 354 A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 354 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~ 429 (587)
. .....+|.+..+++++++.+|..++.+|+.++...... ......+|.+.+++.++++.+|..++.++..++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 1 22347889999999999999999999999987654322 1224577888888888888888888888887764211
Q ss_pred h---hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 430 V---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 430 ~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
. .......+|.+..++.+++..+|..|+.+|+.++..... .......++.+.+++.++++.+|..|+.+|++++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 0 111233566777777777777777777777777631100 1122335556666666666666666666665554
No 68
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=7.7e-13 Score=119.35 Aligned_cols=194 Identities=13% Similarity=0.237 Sum_probs=131.7
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHH-HHHHhCC----CccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhC-HH
Q 007842 242 ILPVIVNFSQDKSWRVRYMVANQLYE-LCEAVGP----EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN-PE 314 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~-~~~~~~~----~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~~ 314 (587)
+-+-+...+++++|..|..++..++. ++...+. ......++..+.+.+ +|.+..||..|+.+++.++..++ +.
T Consensus 17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 33344555677788888888888877 6644222 111235677777777 67788888888888888887776 32
Q ss_pred ---HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh
Q 007842 315 ---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 315 ---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (587)
.+...++|.+...++|+...||.++..++..++...++. .+.+.+++.+...+++.++.+|..++..+..+...
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 455667778888778888888888777777776655321 11445667777777777778888888887777766
Q ss_pred hch--h---hHH-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHH
Q 007842 389 IGI--D---LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 435 (587)
Q Consensus 389 ~~~--~---~~~-~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~ 435 (587)
.+. + .+. +.++|.+.+++.|.+..+|.++.++++.+.+.+|.+.+.+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p 229 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVK 229 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 552 1 234 6677777777777777777777777777777777655443
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.48 E-value=4.1e-11 Score=117.22 Aligned_cols=307 Identities=12% Similarity=0.071 Sum_probs=205.2
Q ss_pred hhchHHHHHHhccCC------------cHHHHHHHHHHHHHHHHHhCCCccc---cchH----------HHHHHhcCCCh
Q 007842 239 VAHILPVIVNFSQDK------------SWRVRYMVANQLYELCEAVGPEPTR---MDLV----------PAYVRLLRDNE 293 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~------------~~~vR~~a~~~l~~~~~~~~~~~~~---~~l~----------~~l~~~l~d~~ 293 (587)
..-++|.+.+++... ++.+|..|+.++++++..-++.... ..++ +.+.+++....
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 445677777766642 2688899999999888765443211 1122 33334343221
Q ss_pred --HH-----HHH-------HHHHhHHHHHhhhCHH--HHHHhHhHHHHHhcc-----------CCcHHHHHHHHHHHHcc
Q 007842 294 --AE-----VRI-------AAAGKVTKFCRILNPE--LAIQHILPCVKELSS-----------DSSQHVRSALASVIMGM 346 (587)
Q Consensus 294 --~~-----vr~-------~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~-----------d~~~~vr~~a~~~l~~l 346 (587)
.+ ++. .|+.+|..++..-... ......++.+..++. +.+..++..++++|.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 555 7888888875431111 112345666666663 23578999999999999
Q ss_pred ccccc--hhHH--HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hh-HHhhHHHHHHHH-hcCCChHHHHHH
Q 007842 347 APLLG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIVEL-AEDRHWRVRLAI 417 (587)
Q Consensus 347 ~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~~l~~l~~~-~~~~~~~vR~~~ 417 (587)
+..-. +..+ ..-.+|.+..++.+.+++++..++.+|..++..-+. .. .....+|.+.++ ..+.+..++..+
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 85432 1122 134589999999999999999999999998753111 11 223568888886 566788999988
Q ss_pred HHHHHHHHHhh-C-hhhh--HHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHH--hChHH----HhhhhHHHHHhh
Q 007842 418 IEYIPLLASQL-G-VGFF--DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPEW----AMQHITPQVLEM 483 (587)
Q Consensus 418 ~~~l~~l~~~~-~-~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~~----~~~~l~~~l~~~ 483 (587)
+.++..++... . ...+ ....+|.+..++.+... .++..|+.+|.++... -+.+. .....+|.+.++
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 88888887632 1 1112 23467888888876543 5899999999988852 12221 234578999999
Q ss_pred ccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 484 INNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 484 l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
+.+++..++..|+.+|.+++..... .......+|.+..+++++++.+|..++.+|.++...-
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999742111 1124567899999999999999999999999988653
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.47 E-value=5.3e-09 Score=113.22 Aligned_cols=556 Identities=12% Similarity=0.082 Sum_probs=311.2
Q ss_pred HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHH-------HHHHHHHHhccccc-cCCCc----------chH
Q 007842 23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE-------VLLAMAEELGVFIP-YVGGV----------EHA 84 (587)
Q Consensus 23 ~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~-------v~~~~~~~l~~l~~-~~~~~----------~~~ 84 (587)
+-.|......+..+++...|+ .|+.+++-+.+....++. +...+.+.+..+.. .++.. ...
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~ 192 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 445566777788888777654 478888888775554432 22233333332211 01100 123
Q ss_pred hhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhH-HhhHHHHHH-HHhcCCCCcchhhHHhhhHhhcC-CC-Ch-
Q 007842 85 HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDL-VDWYIPLVK-RLAAGEWFTARVSACGLFHIAYP-SA-PD- 158 (587)
Q Consensus 85 ~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~-~l~~~~~~~~r~~a~~~l~~~~~-~~-~~- 158 (587)
+.+++++..++. ..++.+...++++++.....++...+ ...+++.+. .+..++ ..|..|+..+..+.. .. ++
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~--~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSP--DTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSH--HHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCH--HHHHHHHHHHHHHHccccCCch
Confidence 455666655554 45678888999999998887776543 345777766 666543 467778888877665 32 22
Q ss_pred -HHHH-------HHHHHH-HHh-------------cCCCChHHHHHHHHhHHHHHHhhcc-----chhhhHH---HHHHH
Q 007842 159 -ILKT-------ELRSIY-TQL-------------CQDDMPMVRRSAASNLGKFAATVEP-----AHLKTDI---MSIFE 208 (587)
Q Consensus 159 -~~~~-------~l~~~l-~~l-------------~~d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l---~~~l~ 208 (587)
.+.+ .+++.+ ..+ ..+.+.+.-+..+..+..+++.... +...+.+ +..+.
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 1221 122212 100 1233456666666666666555332 1112222 23444
Q ss_pred HhhhCCchhHHHHHHHHHHHHhhhcChh--------hhhhchHHHHHHhcc----------C-CcH----------HHHH
Q 007842 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQ--------DCVAHILPVIVNFSQ----------D-KSW----------RVRY 259 (587)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~~~----------d-~~~----------~vR~ 259 (587)
.....++..+-..+.+.+..+.+.+-.+ .....+.+.+..-+. | .+| ....
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f 430 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence 4555667777777888877776643311 122234444443221 1 111 1111
Q ss_pred HHH-HHHHHHHHHhCCCccccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhcc----
Q 007842 260 MVA-NQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS---- 329 (587)
Q Consensus 260 ~a~-~~l~~~~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~---- 329 (587)
... .+|..+....+ ......+++.+.+.+.+ .+|..|++++.+++.+++...++ .+.+.++|.+..++.
T Consensus 431 ~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 431 KSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 111 44444433322 22233455555555543 57999999999999999987653 567888898888876
Q ss_pred -CCcHHHHHHHHHHHHccccccch-hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh----------HHhh
Q 007842 330 -DSSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQS 397 (587)
Q Consensus 330 -d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~ 397 (587)
|+...||..++..++++++.+.. ..+.+.+++.+...+.+.++.|...|+.++..+++..+..- +.+.
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 46678899999999999887642 34567788888888888889999999999999998765432 3455
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----hHHHHHHHHHHhc--------CCCc-----hHH--HHHHHH
Q 007842 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWL--------QDKV-----YSI--RDAAAN 458 (587)
Q Consensus 398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l--------~d~~-----~~v--r~~a~~ 458 (587)
++..+.....+-+..-+..++++++.++...+.+. +.+.+++.+...+ .+++ ..+ -...++
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~ 669 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIK 669 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHH
Confidence 55556666666677888899999999999887443 2223333322211 1211 112 233455
Q ss_pred HHHHHHHHhChHHH--hhhhHHHHHhhccC-----------------Cch------hHHHHHHHHHHHhhccc-ChHHHH
Q 007842 459 NLKRLAEEFGPEWA--MQHITPQVLEMINN-----------------PHY------LYRMTILRAISLLAPVM-GSEITC 512 (587)
Q Consensus 459 ~l~~l~~~~~~~~~--~~~l~~~l~~~l~d-----------------~~~------~~R~~a~~~l~~l~~~~-~~~~~~ 512 (587)
++..++...|..+. ...+++.+.++.+- ..+ .+|...++.+....... +.+.+.
T Consensus 670 ~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~ 749 (1023)
T 4hat_C 670 TNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVV 749 (1023)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 66667777776542 23445544443211 111 23333444444444322 233333
Q ss_pred hhHHHHHHh-h---cCCCChhHHH-HHHHHHHHhhhhhchH-------HHHhhHHHHHHHhcCC--CCccHHHHHHHHHH
Q 007842 513 SRLLPVVIN-A---SKDRVPNIKF-NVAKVLQSLIPIVDQS-------MVEKTIRPCLVELTED--PDVDVRFFATQAIQ 578 (587)
Q Consensus 513 ~~il~~l~~-~---l~d~~~~vR~-~~~~~l~~l~~~~~~~-------~~~~~i~~~l~~l~~d--~d~~Vr~~a~~al~ 578 (587)
..++|.++. . .....+..|. .++.....++.+++.. .+...+-|++.-+..| .-|+.|..-.+-+.
T Consensus 750 ~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~ 829 (1023)
T 4hat_C 750 KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLK 829 (1023)
T ss_dssp HHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 344444333 2 2223444443 3444445555555542 2223334444444443 34788888777777
Q ss_pred HHHH
Q 007842 579 SIDH 582 (587)
Q Consensus 579 ~l~~ 582 (587)
.+.+
T Consensus 830 ~~~~ 833 (1023)
T 4hat_C 830 VINE 833 (1023)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 71
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.43 E-value=1.9e-09 Score=116.75 Aligned_cols=508 Identities=8% Similarity=0.034 Sum_probs=294.9
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCcc---
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE--- 82 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~~--- 82 (587)
.++.+++.+.+++...|.+|-+.|..+ +. .| ..+......+.. ..++++|..++..+.+.+.. ++..+
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~-q~-sp-~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKF-QD-NP-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH-HH-CT-TGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHH-Hc-Cc-cHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 578899999888888999999888764 22 22 234444444432 34578888888888765542 22111
Q ss_pred hHhhhHHHHhhhhcch-----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCC
Q 007842 83 HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (587)
....+++.+.+...++ .+.+|.....++..++...-++. +..+++.+.+...+.. ......+.++..+
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~~-~~~~~~L~iL~~L----- 164 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSSV-NVCENNMIVLKLL----- 164 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTCH-HHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCCH-HHHHHHHHHHHHH-----
Confidence 1123444444433343 35677778888888887766654 5556666655554321 1111111111111
Q ss_pred hHHHHHHHHHHHHhcCCC-ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcCh
Q 007842 158 DILKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP 235 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.+-+.....+. ...-|...-..+..- .+.+++++...+. ...+.+...+++++....+.++.
T Consensus 165 -------~EEV~~~~~~~l~~~r~~~lk~~l~~~---------~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i 228 (1023)
T 4hat_C 165 -------SEEVFDFSAEQMTQAKALHLKNSMSKE---------FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY 228 (1023)
T ss_dssp -------HHHHHTSCTTTSCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT
T ss_pred -------HHHHHHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 11111111111 111122221222211 2344555544443 34567788899999988888775
Q ss_pred hh-hhhchHHHHH-HhccCCcHHHHHHHHHHHHHHHHH-h-CCC-ccccch-------HHHH-HHh-------------c
Q 007842 236 QD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE-PTRMDL-------VPAY-VRL-------------L 289 (587)
Q Consensus 236 ~~-~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~~~~~-~-~~~-~~~~~l-------~~~l-~~~-------------l 289 (587)
.. ..+.+++.+. .+++ ++..|..|++++..++.. . ++. .....+ ++.+ ..+ .
T Consensus 229 ~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~ 306 (1023)
T 4hat_C 229 RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANA 306 (1023)
T ss_dssp HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHT
T ss_pred HHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcc
Confidence 42 3455777777 7765 467999999999998752 2 121 111111 1111 100 1
Q ss_pred CCChHHHHHHHHHhHHHHHhhhCH--------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc-----h---h
Q 007842 290 RDNEAEVRIAAAGKVTKFCRILNP--------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-----K---D 353 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-----~---~ 353 (587)
.+.+.+.....+..+..+++.... .......+..+......+++++-..++..+..+.+..- . .
T Consensus 307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~ 386 (1023)
T 4hat_C 307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE 386 (1023)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 234455555555555555543211 11122223455566666777776666666555543221 1 1
Q ss_pred HHHHhHHHHHHHhhcCCC-------------------hH--HHH-HHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--C
Q 007842 354 ATIEQLLPIFLSLLKDEF-------------------PD--VRL-NIISKLDQVNQVIGIDLLSQSLLPAIVELAED--R 409 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~-------------------~~--vr~-~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--~ 409 (587)
.+...+++.+...+.-+. .+ ..- ..-.+|..+....+ ....+.+++.+.+.+.+ .
T Consensus 387 ~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~ 465 (1023)
T 4hat_C 387 EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEW 465 (1023)
T ss_dssp HHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCC
Confidence 234456666665554221 00 111 11133333333223 34445667777665543 6
Q ss_pred ChHHHHHHHHHHHHHHHhhChh---hhHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHH
Q 007842 410 HWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQV 480 (587)
Q Consensus 410 ~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l 480 (587)
+|+.|.+++-+++.++..+..+ .+.+.++|.++.+.. |+...||..++.++|...+.+... .+.+.+++.+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L 545 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8999999999999999876543 345567777777765 466678888889999888755321 2456777888
Q ss_pred HhhccCCchhHHHHHHHHHHHhhcccChHH----------HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 481 LEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 481 ~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
++.+.++++.+..+|+.++..+++.++... +.+.++..+.....+-.+.-+..+.++++.++...+..
T Consensus 546 ~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 888888899999999999999998777543 45666666667666778888899999999999987754
No 72
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.43 E-value=9.4e-12 Score=110.34 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=138.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---h
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---P 469 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~ 469 (587)
+...|.+..++.++++.+|..++..+..++..-. ........+|.+..++.++++.+|..|+.+|++++.... .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3445666666777777777777777776653211 111222467888888999999999999999998874211 1
Q ss_pred HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842 470 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 470 ~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 546 (587)
.......+|.+..++.+++..+|..++.++++++...... ......+|.+.++++++++.+|..++.+|.+++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1233567899999999999999999999999998632221 1245689999999999999999999999999986532
Q ss_pred hH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 547 QS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 547 ~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.. ......++.|.+++.+++++||..|..+|..+++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 3345688999999999999999999999998864
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.42 E-value=5.6e-11 Score=116.27 Aligned_cols=303 Identities=13% Similarity=0.048 Sum_probs=207.2
Q ss_pred chHHHHHHhcCCC------------hHHHHHHHHHhHHHHHhhhCHHH---HHHhHh----------HHHHHhccCCc--
Q 007842 280 DLVPAYVRLLRDN------------EAEVRIAAAGKVTKFCRILNPEL---AIQHIL----------PCVKELSSDSS-- 332 (587)
Q Consensus 280 ~l~~~l~~~l~d~------------~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~----------~~l~~~~~d~~-- 332 (587)
..+|.|+++++.. ++++|..|+.+|..++..-+... ....++ +.+.+++..+.
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 5788888888753 36999999999999987543211 111122 22223332221
Q ss_pred H-----HHHH-------HHHHHHHccccccc-hhHH-HHhHHHHHHHhhc-----------CCChHHHHHHHHhhhhhhh
Q 007842 333 Q-----HVRS-------ALASVIMGMAPLLG-KDAT-IEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 333 ~-----~vr~-------~a~~~l~~l~~~~~-~~~~-~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~~ 387 (587)
. .++. .++++|.+++..-. .+.+ ..-.++.+..++. +.++.++..|+.+|..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 1 1544 78888888864311 1111 2235677777763 1346789999999999985
Q ss_pred hhc-hh-hH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhh-HHHHHHHHHHh-cCCCchHHHHHHHH
Q 007842 388 VIG-ID-LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF-DDKLGALCMQW-LQDKVYSIRDAAAN 458 (587)
Q Consensus 388 ~~~-~~-~~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~ 458 (587)
.-. .. .+ ....+|.+..++.+++..++..++.++..++..-.. ..+ ....+|.++.+ +.+.+..++..|+.
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~ 309 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 309 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 432 11 12 245699999999999999999999999888642111 111 12356778886 56678899999999
Q ss_pred HHHHHHHHh---ChHHH-hhhhHHHHHhhccCCch----hHHHHHHHHHHHhhcc--cChHH----HHhhHHHHHHhhcC
Q 007842 459 NLKRLAEEF---GPEWA-MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI----TCSRLLPVVINASK 524 (587)
Q Consensus 459 ~l~~l~~~~---~~~~~-~~~l~~~l~~~l~d~~~----~~R~~a~~~l~~l~~~--~~~~~----~~~~il~~l~~~l~ 524 (587)
++.++.... ..... ....+|.+..++.+++. .++..++.+|.+++.. .+.+. .....+|.++.+++
T Consensus 310 aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred HHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence 999998632 12222 35678999998876643 4899999999998752 12221 23567899999999
Q ss_pred CCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 525 DRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 525 d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+++..++..++.+|.+++..-.. .......+|.|.+++...+..+|..|+.||..|..
T Consensus 390 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999843211 13345678999999999999999999999999875
No 74
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.39 E-value=5.5e-14 Score=124.45 Aligned_cols=187 Identities=22% Similarity=0.232 Sum_probs=111.2
Q ss_pred HHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH
Q 007842 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (587)
Q Consensus 169 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (587)
..+++|+++.||..++..+. . ..+..+.+|+++.||..++..+ +. +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence 35567777788777776531 1 1245567777777777776532 11 23556
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc
Q 007842 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (587)
Q Consensus 249 ~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~ 328 (587)
+++|++|.||..++..+ + . +.+..+++|+++.||.+++..+ +. +.+..++
T Consensus 106 ll~D~d~~VR~~aA~~l-------~-----~---~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------P-----L---EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------C-----T---GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------C-----H---HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 67777777777777642 1 1 1245556777777777776631 11 2345666
Q ss_pred cCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC
Q 007842 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (587)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~ 408 (587)
+|+++.||..++..+ +. +.+..+++|+++.||..++..+. . +.+..+++|
T Consensus 156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~-------~--------~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC-------H--------HHHHHHHcC
Confidence 777777777777651 11 23345667777777777776531 1 224445677
Q ss_pred CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (587)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
++|.||..++..++ .+.+..+ +|+++.||.++...|+
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 77777777766543 1334444 7777777777765543
No 75
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.36 E-value=1.7e-13 Score=121.37 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=114.4
Q ss_pred HhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHh
Q 007842 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 366 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (587)
.+++|+++.||..++..+ + ...+..+++|+++.||..++..+. . +.+..+
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHHH
Confidence 445777777777777753 1 123556677777777777776431 1 234566
Q ss_pred hcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC
Q 007842 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 446 (587)
++|+++.||..++..+. . +.+..+++|+++.||..++.. ++. +.+..+++
T Consensus 107 l~D~d~~VR~~aA~~l~-------~--------~~L~~L~~D~d~~VR~~aA~~-------l~~--------~~l~~l~~ 156 (244)
T 1lrv_A 107 MFDEDREVRITVADRLP-------L--------EQLEQMAADRDYLVRAYVVQR-------IPP--------GRLFRFMR 156 (244)
T ss_dssp TTCSCHHHHHHHHHHSC-------T--------GGGGGGTTCSSHHHHHHHHHH-------SCG--------GGGGGTTT
T ss_pred HcCCCHHHHHHHHHhCC-------H--------HHHHHHHcCCCHHHHHHHHHh-------cCH--------HHHHHHHc
Confidence 77777777777776541 0 113344677777777777652 122 12345667
Q ss_pred CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC
Q 007842 447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~ 526 (587)
|+++.||..++.. .+. +.+..+++|++|.||..++..+ +. +.+..+++|+
T Consensus 157 D~d~~VR~~aa~~-------l~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~ 206 (244)
T 1lrv_A 157 DEDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDP 206 (244)
T ss_dssp CSCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCS
T ss_pred CCCHHHHHHHHHc-------CCH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCC
Confidence 7778887777664 121 2233566777888887777642 11 3466667788
Q ss_pred ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842 527 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 578 (587)
Q Consensus 527 ~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~ 578 (587)
++.||..++..++ .+.+..| .|+++.||..|..+|+
T Consensus 207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 8888888777754 2455556 8888888887776654
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.35 E-value=1.7e-10 Score=121.29 Aligned_cols=281 Identities=14% Similarity=0.189 Sum_probs=215.3
Q ss_pred HHHHHHhHHHHHhhh-CHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----hhHHHHhHHHHHHHhhcCCC
Q 007842 297 RIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEF 371 (587)
Q Consensus 297 r~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~ 371 (587)
+..++..+..+...- +.......++..+.+.+.++... ..++.++..++...+ .+.+.-.++|.++..+.|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 455555565554421 11111125677788888877555 888888888886663 34454457899999999999
Q ss_pred hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh---hHHHHHHHHHHhcCC
Q 007842 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQD 447 (587)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d 447 (587)
..||.+|..+...+...+.+... ..++|.+...+.+. .|..+.+++..++.++... ++. ..+.++|.+-..+.|
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d 186 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWD 186 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhccc
Confidence 99999999999999999988776 78899999887654 6999999999999999765 333 346789999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHh--hcccChHHHHhhHHHHHHhhcCC
Q 007842 448 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL--APVMGSEITCSRLLPVVINASKD 525 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l--~~~~~~~~~~~~il~~l~~~l~d 525 (587)
..++|+.+|..++..++..+++.. .+.++|.+.+.+.+|+. + ..++..|+.. ...+.. .....+.|.|.+.+++
T Consensus 187 ~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~-~~l~~~~p~l~r~l~~ 262 (986)
T 2iw3_A 187 TKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTP-ATLSIMVPLLSRGLNE 262 (986)
T ss_dssp SSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCH-HHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecc-hhHHHHHHHHHhhhcc
Confidence 999999999999999998887653 45689999999999854 2 2223333332 122222 2467788999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhc
Q 007842 526 RVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 526 ~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~-l~~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
+...++..++-.+.+|+.-+... .|...++|.+.+ .-+-.||++|..+.+|+..+.+..+
T Consensus 263 ~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 263 RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999877554 677888899988 4567799999999999999987654
No 77
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.32 E-value=3.2e-09 Score=111.88 Aligned_cols=256 Identities=14% Similarity=0.183 Sum_probs=201.6
Q ss_pred hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH
Q 007842 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 315 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 315 (587)
..+...+.+...+.... ..|+..++.++...+... +.-.++|.+...+.|....||.+|..+...+...+++..
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 35778888888887555 888899999987665421 112467888888999999999999999999999998876
Q ss_pred HHHhHhHHHHHhccCC-cHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842 316 AIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 316 ~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (587)
. ..++|.+...+.+. .|+.+.+++..+..++...+.. ..++.++|.+...+.|.-++|..++..++..++..+++.
T Consensus 131 ~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 131 I-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred H-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence 5 78889888887655 6999999999999998765432 246789999999999999999999999999999999988
Q ss_pred hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-C---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007842 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-G---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (587)
Q Consensus 393 ~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 468 (587)
.+ ...+|.+.+.+.+++. .-++++.++... - .......+.|++...|.+....++..++-.+.++++...
T Consensus 210 d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 210 DI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp TT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred ch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 76 6789999999998853 234444443321 0 111235689999999999999999999999999998665
Q ss_pred hH----HHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhc
Q 007842 469 PE----WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAP 504 (587)
Q Consensus 469 ~~----~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~ 504 (587)
.. .|.+.++|.+..... -+++.+|..+-+++..+..
T Consensus 284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 43 366778888876543 4588999999999888854
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.30 E-value=1.4e-10 Score=102.76 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=110.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhh
Q 007842 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF 433 (587)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~ 433 (587)
.|.+..+++++++++|..++.+|..++..-.. .......+|.+.+++.++++.+|..++.+++.++..-. ....
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 34444445555555555555555544421110 01112344555555555555555555555555442110 0011
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH-
Q 007842 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE- 509 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~- 509 (587)
....+|.+..++.+++..+|..|+.++++++..... .......+|.+.+++.+++..+|..++.++++++......
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 122467777777888888888888888887642111 1123557888888888888888999999888887642211
Q ss_pred --HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842 510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 510 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
......++.+.++++++++.+|..++.+|..++.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 1234678888999999999999999999988753
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.27 E-value=7.9e-09 Score=82.92 Aligned_cols=215 Identities=17% Similarity=0.159 Sum_probs=147.2
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhhChhhhHH
Q 007842 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDD 435 (587)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~-~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~ 435 (587)
..++..+...+.|+-+.|+.+|+..+..+...... ..+.++..+..+ -+++.-...+.+...+|.++.. .++. ..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~-v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL-VK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-HH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-HH
Confidence 34556666667777677777777777766655431 123333333333 3455555666677777777664 3333 34
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhH
Q 007842 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL 515 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i 515 (587)
.++|.++.-..=.++.+|.....+|+.+...+.. ....+...+..++.++|..-|.+++.+++.++... .+ +..-+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~~-yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-FK-YVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HH-HHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-cc-ccCcc
Confidence 5778887777767888899888999988876433 33455666777888899888999999988887632 22 45667
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 516 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+|-+..++.|.+..||..++++|+.++...+. +...+...+.+ .+|+...|......+|+++.-
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk--lRkii~~kl~e-~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK--LRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--HHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--HHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999998876432 32333333333 488888999999999988764
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.23 E-value=2e-09 Score=101.99 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=156.3
Q ss_pred cHHHHHHHHHHHHccccccc--hhHH--HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hh-HHhhHHHHHH
Q 007842 332 SQHVRSALASVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIV 403 (587)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~~l~~l~ 403 (587)
++.+|..++.+|.+++..-. +..+ ..-.+|.+..++.+++++++..++.+|..++..-+. .. .....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46789999999998875432 1122 124589999999998999999999999988753111 11 1235678888
Q ss_pred HH-hcCCChHHHHHHHHHHHHHHHhh-C-hhhh--HHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHHh--ChHH-
Q 007842 404 EL-AEDRHWRVRLAIIEYIPLLASQL-G-VGFF--DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEW- 471 (587)
Q Consensus 404 ~~-~~~~~~~vR~~~~~~l~~l~~~~-~-~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~~- 471 (587)
++ ..+.+..++..++.++..++... + ...+ ....+|.+..++.+.+. .++..|+.+|..+.... +.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 85 56678888888888888887522 1 1112 23467888888876543 58999999999888621 2221
Q ss_pred ---HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 472 ---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 472 ---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
.....+|.+.+++.+++..++..|+.+|.+++..... .......+|.+.++++++++.+|..++.+|.++...-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 2245789999999999999999999999999842111 1124567999999999999999999999999998764
Q ss_pred ch
Q 007842 546 DQ 547 (587)
Q Consensus 546 ~~ 547 (587)
+.
T Consensus 337 ~~ 338 (354)
T 3nmw_A 337 PA 338 (354)
T ss_dssp CG
T ss_pred HH
Confidence 33
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.21 E-value=1.2e-09 Score=103.64 Aligned_cols=213 Identities=10% Similarity=-0.004 Sum_probs=158.5
Q ss_pred ChHHHHHHHHhhhhhhhhhc-hhh-H--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhh-HHHHHHHHH
Q 007842 371 FPDVRLNIISKLDQVNQVIG-IDL-L--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF-DDKLGALCM 442 (587)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~~~-~~~-~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~-~~~l~~~l~ 442 (587)
++.++..|+.+|..++..-. ... + ....+|.+..++.+++..++..++.++..++..-. ...+ ....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46799999999999985432 221 2 23569999999999999999999999999875311 1111 223577788
Q ss_pred Hh-cCCCchHHHHHHHHHHHHHHHHh---ChHHH-hhhhHHHHHhhccCCch----hHHHHHHHHHHHhhcc--cChHH-
Q 007842 443 QW-LQDKVYSIRDAAANNLKRLAEEF---GPEWA-MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI- 510 (587)
Q Consensus 443 ~~-l~d~~~~vr~~a~~~l~~l~~~~---~~~~~-~~~l~~~l~~~l~d~~~----~~R~~a~~~l~~l~~~--~~~~~- 510 (587)
.+ +.+.+..++..|+.++.++.... ..... ....+|.+.+++.+++. .++..++.+|.+++.. .+.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 46678899999999999987522 12222 35688999998876643 5899999999998752 12221
Q ss_pred ---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 511 ---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 511 ---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
.....+|.++.++++++..++..++.+|.+++..-.. .......+|.|.+++.+.+..+|..|+.||..|...
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2345799999999999999999999999999843211 133456799999999999999999999999998763
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.3e-10 Score=105.86 Aligned_cols=182 Identities=16% Similarity=0.161 Sum_probs=137.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---
Q 007842 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--- 471 (587)
Q Consensus 402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 471 (587)
+.+-+.+++|..|..+++.+..+......... ...+.+.+-..+.|.+..|...++.++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45678899999999999988877654322111 11234566778899999999999999999987655321
Q ss_pred -----HhhhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 472 -----AMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 472 -----~~~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
....++|.+++ .+.|+...+|..++.++..++...+.. ..+++.+...+++++|.+|..++.+|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 23567787776 478889999999999998887654432 456778888999999999999999999998877
Q ss_pred chH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 546 DQS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 546 ~~~-----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
|.. .....+++.+..+++|+|++||..|..++..+..++|.
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 653 33455677778888999999999999999999998874
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.18 E-value=1.1e-07 Score=105.63 Aligned_cols=487 Identities=13% Similarity=0.066 Sum_probs=270.7
Q ss_pred hHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh-cCCCCcchhhHHhhhHhh----cCCCChHH
Q 007842 87 LLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGEWFTARVSACGLFHIA----YPSAPDIL 160 (587)
Q Consensus 87 l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~~~~~~~r~~a~~~l~~~----~~~~~~~~ 160 (587)
+...+..... +.+..+|+.|...|.++-+.-+ .+......+. .+.+..+|..|...+... +..++++.
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~ 86 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLE 86 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 4444444333 2366788888888877644321 1222222233 334566777777666543 24456654
Q ss_pred HHHHHHHHHHhcC-------CCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842 161 KTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 161 ~~~l~~~l~~l~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
+..+...+..++. +..+.||..++.++..++..--+ ..++.+++.+.++++. ++..+..+..+|..+.+.+
T Consensus 87 k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 87 KVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV 164 (1204)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 4444444443321 14689999999999999988544 3457777777777765 4456778888888886542
Q ss_pred Ch------h----------hhhhchHHHHHHhccC-------------------CcHHHHHHHHHHHHHHHHHhCCCcc-
Q 007842 234 EP------Q----------DCVAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGPEPT- 277 (587)
Q Consensus 234 ~~------~----------~~~~~l~~~l~~~~~d-------------------~~~~vR~~a~~~l~~~~~~~~~~~~- 277 (587)
.. . ...+.+++.+.+.+++ .+..++..+.+++..+..-.+....
T Consensus 165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~ 244 (1204)
T 3a6p_A 165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHIT 244 (1204)
T ss_dssp HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHH
Confidence 11 0 0112344444444432 2234566666666544332221111
Q ss_pred --ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-HHHH---HHhH----hHHHHHhc--------cCCcHHHHHHH
Q 007842 278 --RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELA---IQHI----LPCVKELS--------SDSSQHVRSAL 339 (587)
Q Consensus 278 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~---~~~i----~~~l~~~~--------~d~~~~vr~~a 339 (587)
...+++.+..++.+ +.+|.+|+.+|..+..... ++.. ...+ +..+.... .+.+..++...
T Consensus 245 ~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 245 AENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred hccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 12478888877765 5789999999999987543 2211 1111 11222221 33356677777
Q ss_pred HHHHHccccccc----------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--h-h---hHHhhHHHHHH
Q 007842 340 ASVIMGMAPLLG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-D---LLSQSLLPAIV 403 (587)
Q Consensus 340 ~~~l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~~l~~l~ 403 (587)
++.+..++.... .......+++.+..+..+++..+-..++.....+.+... . + .+...+++.+.
T Consensus 323 ~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~ 402 (1204)
T 3a6p_A 323 CQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASM 402 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 777666553211 112345788999999998888888888776666655432 1 1 12233444442
Q ss_pred HHh------cCC---------------------ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCC---------
Q 007842 404 ELA------EDR---------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--------- 447 (587)
Q Consensus 404 ~~~------~~~---------------------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--------- 447 (587)
..+ .+. .+..|......+..++...+ ....+.+.+.+...+.+
T Consensus 403 ~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~ 481 (1204)
T 3a6p_A 403 TNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNS 481 (1204)
T ss_dssp HHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhccccccc
Confidence 101 100 13456666666666665432 22233344444333322
Q ss_pred ----------------CchHHHHHHHHHHHHHHHHh---C-hHHHhhhhHHHHHhhc---cCCchhHHHHHHHHHHHhhc
Q 007842 448 ----------------KVYSIRDAAANNLKRLAEEF---G-PEWAMQHITPQVLEMI---NNPHYLYRMTILRAISLLAP 504 (587)
Q Consensus 448 ----------------~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l---~d~~~~~R~~a~~~l~~l~~ 504 (587)
+.+...++....+..+.+.+ . .+.....+.|.++..+ +..++.+|...+.+++.+..
T Consensus 482 ~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~ 561 (1204)
T 3a6p_A 482 CSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFP 561 (1204)
T ss_dssp ---------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGG
T ss_pred ccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 23344555555555554433 1 0101112455555542 34578899999999999887
Q ss_pred ccCh-HHHHhhHHHHHHhhcCC------------CChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCC---CC
Q 007842 505 VMGS-EITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED---PD 566 (587)
Q Consensus 505 ~~~~-~~~~~~il~~l~~~l~d------------~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d---~d 566 (587)
.+.. ..+...++..++..+.+ .+.++|..++.++..++..++.. .+.+.+...+..+... -+
T Consensus 562 ~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~ 641 (1204)
T 3a6p_A 562 FVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLT 641 (1204)
T ss_dssp GGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSC
T ss_pred HHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccccc
Confidence 6542 12445566666655554 24489999999999999887654 3456666666664432 23
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 007842 567 VDVRFFATQAIQSIDHVM 584 (587)
Q Consensus 567 ~~Vr~~a~~al~~l~~~~ 584 (587)
..-+.....|+..++..+
T Consensus 642 ~~e~~~L~eal~~ia~~~ 659 (1204)
T 3a6p_A 642 QMEKCALMEALVLISNQF 659 (1204)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 455666677777765443
No 84
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.16 E-value=7.5e-07 Score=96.12 Aligned_cols=490 Identities=8% Similarity=0.033 Sum_probs=275.0
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCcc---
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE--- 82 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~~--- 82 (587)
.++.++..+.+++++.|.+|-+.|..+-. . ...+.....++.. ..++++|..++..+.+.+.. ++..+
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~--s-p~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE--H-PDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC--C-SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc--C-chHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 57889999999999999999988865421 1 2234334444432 34678888888888665442 22111
Q ss_pred hHhhhHHHHhhhhcc-----hhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCC--
Q 007842 83 HAHVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS-- 155 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~-- 155 (587)
....++..+.+...+ .++.++.....++..+++..-|+. +..+++-+.+...+. ...+...+.++..+.+.
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHH
Confidence 223455555444333 257788999999999988865554 444555444444321 12222233333332221
Q ss_pred ------CChH-----------HHHHHHHHHHHhc-CCCChHHHHHHHHhHHHHHHhhccch-hhhHHHHHH-HHhhhCCc
Q 007842 156 ------APDI-----------LKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIF-EDLTQDDQ 215 (587)
Q Consensus 156 ------~~~~-----------~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l-~~l~~d~~ 215 (587)
.+.. ....+++++...+ ...++.+...+.++++.+.+.++-.. ..+.+++.+ ..+++ +
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~ 259 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--V 259 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--S
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--C
Confidence 1110 1134555555544 34578888899999999999885433 234567765 35543 4
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhch---H----HHHHHhc-------------cCCcHHHHHHHHHHHHHHHHHhCC-
Q 007842 216 DSVRLLAVEGCAALGKLLEPQDCVAHI---L----PVIVNFS-------------QDKSWRVRYMVANQLYELCEAVGP- 274 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l---~----~~l~~~~-------------~d~~~~vR~~a~~~l~~~~~~~~~- 274 (587)
+..|..|+++|..+...-.++ +.+.+ + ..+...+ ++.+...=...++.+..+++....
T Consensus 260 ~~~r~aA~dcL~eIv~k~~~~-~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~l 338 (1073)
T 3gjx_A 260 PMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQL 338 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSGG-GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999987642211 11111 1 1111111 222222222334444444432211
Q ss_pred ---C-ccccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---------------------------HHHHhH
Q 007842 275 ---E-PTRMD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---------------------------LAIQHI 320 (587)
Q Consensus 275 ---~-~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---------------------------~~~~~i 320 (587)
. ..... .+..+..+..-++.++-+.++.....+...+-.+ .+...+
T Consensus 339 Ie~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L 418 (1073)
T 3gjx_A 339 LEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKV 418 (1073)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHH
T ss_pred HhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHH
Confidence 1 11111 2333455556667888888887776665533111 111222
Q ss_pred hHHHHHhcc---------------------CCcH-HHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcC--CChHHHH
Q 007842 321 LPCVKELSS---------------------DSSQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRL 376 (587)
Q Consensus 321 ~~~l~~~~~---------------------d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~ 376 (587)
...+...+. |.+. .++...-.++..+. .++.+.....+.+.+.+.+.. .+...+.
T Consensus 419 ~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~le 497 (1073)
T 3gjx_A 419 RLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLN 497 (1073)
T ss_dssp HHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHH
T ss_pred HHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHh
Confidence 222222221 1111 12223333333332 233445555666666655543 4588999
Q ss_pred HHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHhhC-hhhhHHHHHHHHHHhcCC
Q 007842 377 NIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQD 447 (587)
Q Consensus 377 ~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~-----~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d 447 (587)
+++.+++.++..... +.+.+.+++.+..+.+.+ ...++..++-.+|...+-+. ...+.+.++..++..+.+
T Consensus 498 a~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~ 577 (1073)
T 3gjx_A 498 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHE 577 (1073)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 999999999877663 245567777777776544 23455555556666554432 122345567777788899
Q ss_pred CchHHHHHHHHHHHHHHHHhChHH----------HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842 448 KVYSIRDAAANNLKRLAEEFGPEW----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~ 510 (587)
++..|+.+|+.++..+++..+..+ +.+.++..+.....+-..+-.....++++.++...+.+.
T Consensus 578 ~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 578 THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999877653 223334333344444466777888899999998888643
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.16 E-value=4e-09 Score=93.64 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=105.2
Q ss_pred HhcCCChHHHHHHHHHHHHHHHhhChhhhH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH------Hhhhh
Q 007842 405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW------AMQHI 476 (587)
Q Consensus 405 ~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l 476 (587)
.+-+++|+.|..+++.+.........+.+. +-+.+.+--.+.|++..|-..++..+..++..++... -...+
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 344556666666666665554432211111 1122222222346677777777777777665543321 12456
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHH-
Q 007842 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR- 555 (587)
Q Consensus 477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~- 555 (587)
+|.+.+-+.|+...+|..+-.++..+....++ ..+++.+.+.++++++.+|..++..++.+.+.+|... ...+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~ 207 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLS 207 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence 67777777777777777777776666654444 3455666666677777777777777777777666552 2345
Q ss_pred --HHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842 556 --PCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586 (587)
Q Consensus 556 --~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~ 586 (587)
|.+.++++|+|.+||..|..++..+..++|+
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 6677777777777777777777777766664
No 86
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.15 E-value=1.1e-06 Score=94.84 Aligned_cols=480 Identities=8% Similarity=-0.002 Sum_probs=267.5
Q ss_pred CCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhh----cChh---hHHhhHHHHH
Q 007842 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLV 130 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~----~~~~---~~~~~l~~~l 130 (587)
+.+++.|..+-+.|..+-. .++.+.....+| ..+.++.+|..|+..|...... ++++ .+++.++.++
T Consensus 39 ~p~~~~r~qA~~~L~q~q~---sp~aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l 112 (1073)
T 3gjx_A 39 HGEGAQQRMAQEVLTHLKE---HPDAWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI 112 (1073)
T ss_dssp CSSHHHHHHHHHHHHTSSC---CSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc---CchHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence 4456677777777877754 233333332222 2345889999999999987663 4543 3567788888
Q ss_pred HHHhcCC-----CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc--------
Q 007842 131 KRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-------- 197 (587)
Q Consensus 131 ~~l~~~~-----~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-------- 197 (587)
.+...++ ....+...+.++..++.+.-++....+++-+..+++. ++..+...+..|..+.+.+..-
T Consensus 113 ~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~ 191 (1073)
T 3gjx_A 113 IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQV 191 (1073)
T ss_dssp HHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHH
T ss_pred HHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 7765442 1223333333443333221111122233333333332 3455566666666666553210
Q ss_pred ----------hhhhHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcChhh-hhhchHHHH-HHhccCCcHHHHHHHHHH
Q 007842 198 ----------HLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVI-VNFSQDKSWRVRYMVANQ 264 (587)
Q Consensus 198 ----------~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l-~~~~~d~~~~vR~~a~~~ 264 (587)
...+.+++++...+. ..++.+...++++++...+.++-+. ..+.+++.+ ...++ ++..|..|+++
T Consensus 192 r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dc 269 (1073)
T 3gjx_A 192 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKC 269 (1073)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHH
Confidence 012445555555553 3466778889999999998887643 245577776 46664 46799999999
Q ss_pred HHHHHHHhCCCccccchHHHH-------HHhc-------------CCChHHHHHHHHHhHHHHHhhhCH------H--HH
Q 007842 265 LYELCEAVGPEPTRMDLVPAY-------VRLL-------------RDNEAEVRIAAAGKVTKFCRILNP------E--LA 316 (587)
Q Consensus 265 l~~~~~~~~~~~~~~~l~~~l-------~~~l-------------~d~~~~vr~~a~~~l~~l~~~~~~------~--~~ 316 (587)
+..++.. ..+.....+...+ ...+ .+.+.+.-...+..+..+++.... + ..
T Consensus 270 L~eIv~k-~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~ 348 (1073)
T 3gjx_A 270 LTEIAGV-SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREA 348 (1073)
T ss_dssp HHHHHHS-CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhc-cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 9998864 1111111111111 1111 223333333333344433332111 1 11
Q ss_pred HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---------------------------hHHHHhHHHHHHHhhcC
Q 007842 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---------------------------DATIEQLLPIFLSLLKD 369 (587)
Q Consensus 317 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---------------------------~~~~~~l~~~l~~~l~d 369 (587)
....+.++..+...++.++-..+...+..+...+-. ..+...+...+...+.-
T Consensus 349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~ 428 (1073)
T 3gjx_A 349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK 428 (1073)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 222344455566666777766666555444332210 01122333333333321
Q ss_pred C---------C-----------h--HHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 007842 370 E---------F-----------P--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLA 425 (587)
Q Consensus 370 ~---------~-----------~--~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~--~~~~~vR~~~~~~l~~l~ 425 (587)
+ + . +.+...-.++..+ ..++.+.....+++.+.+.+. ..+|..+.+++-+++.++
T Consensus 429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa 507 (1073)
T 3gjx_A 429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS 507 (1073)
T ss_dssp SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence 1 0 0 1111222222222 234444444556666665443 346999999999999998
Q ss_pred HhhChh---hhHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhccCCchhHHHHHH
Q 007842 426 SQLGVG---FFDDKLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTIL 496 (587)
Q Consensus 426 ~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~~R~~a~ 496 (587)
..+..+ .+.+.+++.+..+...+ ..-++...+-++|...+.+... .+.+.++..+++.+.+++..++.+|+
T Consensus 508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~ 587 (1073)
T 3gjx_A 508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMAC 587 (1073)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHH
T ss_pred CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766532 35566777777666433 2334554556777776654322 25577888888888999999999999
Q ss_pred HHHHHhhcccChHH----------HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 497 RAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 497 ~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
.++..++..++... +...++..+.....+=.+.-.....++++.++...+.+
T Consensus 588 ~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 588 DTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 99999998776542 34445555555555657777888999999998887764
No 87
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.14 E-value=4.4e-07 Score=100.96 Aligned_cols=508 Identities=10% Similarity=0.027 Sum_probs=279.1
Q ss_pred cccHHHHHHHhcCc--cHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCc
Q 007842 8 LYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV 81 (587)
Q Consensus 8 ~~~~~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~ 81 (587)
+..+..+++.+.++ +.+.|.+|-..|..+...- + .+..+.-.+. ..+.+.++|..++..+.+.+.. +. .
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~-~ 84 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS-R 84 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC-H
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC-H
Confidence 33477777777776 7788999998887753321 1 1212222222 1234668888888777665431 22 1
Q ss_pred chHh----hhHHHHhhhhc---chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcC
Q 007842 82 EHAH----VLLPPLETLCT---VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (587)
Q Consensus 82 ~~~~----~l~~~l~~l~~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (587)
+... .+++.+.+... +..+.+|.....++..+++..-++. +..+++.+.++..++ ...+..++.++..+.+
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-Wp~ll~~L~~~~~~~-~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-WPDMLIELDTLSKQG-ETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 2222 33333322211 1468999999999999998866643 566777777766553 2334445555544422
Q ss_pred C------CChHH-----------HHHHHHHHHHhcCC-------------------CChHHHHHHHHhHHHHHHhhccch
Q 007842 155 S------APDIL-----------KTELRSIYTQLCQD-------------------DMPMVRRSAASNLGKFAATVEPAH 198 (587)
Q Consensus 155 ~------~~~~~-----------~~~l~~~l~~l~~d-------------------~~~~vr~~~~~~l~~l~~~~~~~~ 198 (587)
. ..... ...+++.+...+++ .+..++..+.+++..+...++...
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 1 11111 12445555444432 234466677777766655543222
Q ss_pred hh---hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC-hhh---hhhch----H-HHHHHhc-------cCCcHHHHH
Q 007842 199 LK---TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQD---CVAHI----L-PVIVNFS-------QDKSWRVRY 259 (587)
Q Consensus 199 ~~---~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~l----~-~~l~~~~-------~d~~~~vR~ 259 (587)
.. ..+++.+..++.+ +.+|..|+++|..+...-. ++. ....+ + .++.... +|.+..+++
T Consensus 243 i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 21 2477777666654 5689999999999887542 221 11111 1 1222211 333556777
Q ss_pred HHHHHHHHHHHHhC----------CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--H-H---HHHHhHhHH
Q 007842 260 MVANQLYELCEAVG----------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--P-E---LAIQHILPC 323 (587)
Q Consensus 260 ~a~~~l~~~~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~i~~~ 323 (587)
..++.+..++..+. .......+++.+..++.+++..+-..++.....+.+... . + .+...+++.
T Consensus 321 ~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 321 RLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 77777666653221 112234688889999998888888888877776665431 1 1 234445555
Q ss_pred HHH---hccCC-----------------c-------HHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC------
Q 007842 324 VKE---LSSDS-----------------S-------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE------ 370 (587)
Q Consensus 324 l~~---~~~d~-----------------~-------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------ 370 (587)
+.. -+.-+ + +..|......+..++...+. .....+.+.+...+.+.
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~ 479 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSV 479 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhccccc
Confidence 411 11100 0 24566666666666654433 23445555554443321
Q ss_pred -----------------ChH--HHHHHHHhhhhhhhhh---c-hhhHHhhHHHHHHHH-h--cCCChHHHHHHHHHHHHH
Q 007842 371 -----------------FPD--VRLNIISKLDQVNQVI---G-IDLLSQSLLPAIVEL-A--EDRHWRVRLAIIEYIPLL 424 (587)
Q Consensus 371 -----------------~~~--vr~~a~~~l~~l~~~~---~-~~~~~~~~l~~l~~~-~--~~~~~~vR~~~~~~l~~l 424 (587)
++. ...+....+..+...+ . .+.....+.|.+.+. + +..++.+|...+..++.+
T Consensus 480 ~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l 559 (1204)
T 3a6p_A 480 NSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSAL 559 (1204)
T ss_dssp -----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 111 1222233333333222 1 111111234444443 2 346888999999999887
Q ss_pred HHhhC-hhhhHHHHHHHHHHhcCC------------CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCC--
Q 007842 425 ASQLG-VGFFDDKLGALCMQWLQD------------KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP-- 487 (587)
Q Consensus 425 ~~~~~-~~~~~~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~-- 487 (587)
...+. ...+.+.++..++..+.+ .+.+||.+|+.++..++..++... +.+.+...+..++...
T Consensus 560 ~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~ 639 (1204)
T 3a6p_A 560 FPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELL 639 (1204)
T ss_dssp GGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTT
T ss_pred HHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccc
Confidence 76653 223455566666666655 355899999999999998776543 2345555555555432
Q ss_pred -chhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCC
Q 007842 488 -HYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD 525 (587)
Q Consensus 488 -~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d 525 (587)
...-+.....+++.++..+++.. +...+++.+.....+
T Consensus 640 l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 640 LTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 35667777788888766554432 355566666666654
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.12 E-value=1.3e-08 Score=85.70 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=178.4
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhh
Q 007842 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF 432 (587)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~~~ 432 (587)
..+..+.+++.|.++.++..++.++..+.+..... ...+.++|.+..++.+++.++-..+++++..+....+ ++.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35677888999999999999999999999875321 2347789999999999999999999999999987754 444
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHH
Q 007842 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 512 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~ 512 (587)
| ..+...+...+++++.-.+..|+..++.+ +... ....+...+..++.++|.+++.+++.++.+++...+.....
T Consensus 113 y-~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 113 F-LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp H-HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred H-HHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 3 45788888899999999999999999988 2221 23567778888888999999999999999999887766667
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHhhc
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDHVMM 585 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~d~~Vr~~a~~al~~l~~~~~ 585 (587)
+.++..+-.+++++++.++..++.++..+...--.+ .-...+...+..+. -...|.+|..|...-+.+...++
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~~~ 264 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSVIS 264 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhc
Confidence 778888888999999999999999999998652222 22245566667776 78889999999988888776543
No 89
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.11 E-value=4.9e-09 Score=96.55 Aligned_cols=171 Identities=17% Similarity=0.142 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHhhC--hhhhHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhC---hHHHhhhhHHHHHhhcc-
Q 007842 413 VRLAIIEYIPLLASQLG--VGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMIN- 485 (587)
Q Consensus 413 vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~- 485 (587)
.|..++..+..++.... ..+.....+|.++. ++.+++..||..|+.+|+.++.... ........+|.|..++.
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 44455555555544321 11112224577777 8888899999999999998875321 11233467888888877
Q ss_pred CCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHH
Q 007842 486 NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLV 559 (587)
Q Consensus 486 d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~ 559 (587)
+++..+|..|+++|++++..... .+.....+|.+..+++++++.+|..++.+|..++..... ......++|.|.
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 45788999999999998764332 223356888899988888999999999999998765221 134456888888
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHh
Q 007842 560 ELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 560 ~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
.++.+++.+||..|..+|+.|.+.
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 888888999999999999888653
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.09 E-value=2.1e-09 Score=102.19 Aligned_cols=256 Identities=12% Similarity=0.057 Sum_probs=171.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchH
Q 007842 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (587)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (587)
+.+.+..-+-|+.|++|.+|+.+|..+....+...-.. -..+.+-.+|..++-++..+++..++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq------- 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR------- 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence 66667766778899999999999999998865311111 011123355666666665555544322
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHH
Q 007842 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 323 (587)
.-..||+.+++++|.+ .+++++ ..++..++..+..+.|+||.+++-.+..+...+.. .+.+++.
T Consensus 240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 2347999999999998 777765 34555555666778899999999988887444443 5778899
Q ss_pred HHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 401 (587)
+...+.|.+.+||..|+.++..++ .+ ...+.++..+...|.+.+ ..-..+.+..|+.++..-......+.++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 999999999999999999998888 11 224556666666655431 222333444555544322111112467888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (587)
Q Consensus 402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
+..++.+.-..||.++++++..+. . .+.+--++.+++-+++.+|+..+..++.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL---~----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS---E----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC---C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH---h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 888899999999999999886654 1 1223334566778899999999999885
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.09 E-value=1.9e-09 Score=100.69 Aligned_cols=286 Identities=12% Similarity=0.025 Sum_probs=145.7
Q ss_pred hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 007842 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 318 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 318 (587)
...+++-+.++++.++...|+.+.-.+..++.. .++ .. -..+.+.+-++|+++-+|-.|+++++.+.. ....+
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~ 138 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQ 138 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHH
Confidence 345667777888888888998888888776654 222 11 467777888888889999998888888754 23446
Q ss_pred hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 398 (587)
.+.+.+.+.+.|+++.||.+|+-+...+....+. ..+.+++.+..++.|.++.|...|+..+..+...- ... ...+
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a-~~kL 214 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RLA-VSKM 214 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HHH-HHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hHH-HHHH
Confidence 7788888899999999999988887776654322 34567888888888988888888888888776531 111 1223
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 478 (587)
++.+.+. .-.++......++.+..+...- .+...+.+.+.+..+++..+..|...|+.++-.+.. .+... .....+
T Consensus 215 v~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~-~~~a~~ 290 (355)
T 3tjz_B 215 ISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE-LAPAVS 290 (355)
T ss_dssp HHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCC
T ss_pred HHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH-HHHHHH
Confidence 3332211 0112222222333222222110 012345577777778888888888888888777654 22111 122334
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 541 (587)
.+..++.+++..+|..++..+..+....+. .....-..+..+++|++..++.-|+.+|...
T Consensus 291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp THHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 444456667777888888887777764332 2334555677777787777777777666543
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.08 E-value=4.4e-09 Score=98.26 Aligned_cols=291 Identities=13% Similarity=0.034 Sum_probs=167.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
++++......++.-+..++.+++...|+.+.-.+..+++. +++.. ...+.+.+-++++++.+|-.|+.+++.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 3444444456777778899999999999988888877776 23333 667788888899999999999999988754
Q ss_pred ChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (587)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
....+.+.+.+.+.+.|.++.||+.|+-+...+....+ +. ...+++.+..++.|.++.|...|+..+..+... +.
T Consensus 134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~ 208 (355)
T 3tjz_B 134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR 208 (355)
T ss_dssp --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence 22567889999999999999999999999887764322 22 235788888899999999998888888888753 22
Q ss_pred HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh
Q 007842 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (587)
Q Consensus 314 ~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (587)
. ...++++.+... .-.++......+..+..++..- .......+.+.+...+++.++.|...+++++..+.. .+...
T Consensus 209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~ 284 (355)
T 3tjz_B 209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE 284 (355)
T ss_dssp H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH
Confidence 1 223444444331 1124555555666665554321 012345788888999999999999999999988755 22222
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (587)
Q Consensus 394 ~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
.....+.+..++.++++.+|..++..+..+....+ +. ....-.-+..+++|++..++.-|+.+|-
T Consensus 285 -~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~-v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 285 -LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SA-VTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred -HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HH-HHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 13344556667788888999999999988876532 22 2234455677889999998888877654
No 93
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.07 E-value=2.6e-08 Score=88.46 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=130.5
Q ss_pred hhcCCChHHHHHHHHhhhhhhhhhchhhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh------hhHHHH
Q 007842 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------FFDDKL 437 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l 437 (587)
.+-+.+..-|..++..|....+....+.+ .+.+++-+.-.+.|.|..+-..+++.+..+...++.. .-...+
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33344556666666666554433221110 1112232222334778888888888888877655322 113568
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH-
Q 007842 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL- 516 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il- 516 (587)
+|.++.-++|+...||..+-..+..+...+++. .+++.+.+.+++.||++|..++..++.+.+..|.. ....+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~ 207 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLS 207 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cccccc
Confidence 899999999999999999999998888877654 46777878889999999999999999999988876 24567
Q ss_pred --HHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH
Q 007842 517 --PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 550 (587)
Q Consensus 517 --~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~ 550 (587)
|.+.+++.|++.+||.+|+.++..+....|+..+
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999988876533
No 94
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.06 E-value=2.5e-08 Score=91.82 Aligned_cols=172 Identities=10% Similarity=0.030 Sum_probs=131.2
Q ss_pred HHHHHHHHhhhhhhhhhchhh--HHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcC
Q 007842 373 DVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQ 446 (587)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~ 446 (587)
+-|..|+..|..++....... .....+|.+.. ++.+++..+|..++.+++.++..-. ........+|.++.++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 467777888888776554321 22356788888 9999999999999999999886321 11122346777888887
Q ss_pred -CCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHH
Q 007842 447 -DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVV 519 (587)
Q Consensus 447 -d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l 519 (587)
+++..+|..|+.+|+.++..... .+.....+|.+..++.+++..+|..++++|++++..... ......++|.+
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 46889999999999999864322 233456899999999999999999999999999865221 22356789999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 520 INASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 520 ~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
..++.++++.+|..++.+|+++...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999876
No 95
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.04 E-value=1.1e-07 Score=76.53 Aligned_cols=216 Identities=17% Similarity=0.176 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhh
Q 007842 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (587)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (587)
-++++.-+..++.|+-|.||+.+...+..+++..+ +.+.+.+-.++.-+-+++.-..-......++.++..-| + ...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e-~v~ 106 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-E-LVK 106 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-H-HHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-H-HHH
Confidence 35666777777888888888888888888877652 23333333333333455544444455666777665433 2 244
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 320 (587)
.++|.+..-..-.+++.|.....+++.++...+.- ...+..-+..++.|++..=|.+++..++.+++.- . .+....
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~-~yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-F-KYVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-H-HHHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-c-cccCcc
Confidence 56777766555557888888888888888752211 1234445566777877777777777776665531 1 233455
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (587)
+|.+..++.|.+.-||.++.++++.++..-++ ...++...++-++|.+..|.....++++.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 77777888888888888888888888765433 2333444455567888888777777777664
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.03 E-value=3.1e-11 Score=97.40 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~ 513 (587)
.+...+.+...++|+++.+|..|+.+|+.+. .. . ++.+.+.++|+++.+|..++.+++.+.. +
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~ 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----DE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS----ST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence 3445667788889999999998888877542 21 2 4788888889999999999999988764 3
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842 514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580 (587)
Q Consensus 514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l 580 (587)
..++.+...++|+++.||..++.+|+.+.. ...+|.|.++++|+++.||..|..+|++|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 457788888889999999999999998753 35678888888899999999999988753
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.95 E-value=2.4e-08 Score=95.10 Aligned_cols=256 Identities=13% Similarity=0.007 Sum_probs=165.4
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (587)
Q Consensus 10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (587)
=++.|+..|-++.|++|.+|+-.|.++.+..|.-..+. ...+.+--+|....-+|.+|.+++++.-
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV------- 240 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT------- 240 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee-------
Confidence 36889999999999999999999999988776432221 1112222445444556789988888532
Q ss_pred HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007842 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~ 169 (587)
-.-||+.++++|+.+ .+++++ ...+..++ .......|++|..++-.+..+.+.+.. ...+++.+.
T Consensus 241 ---------VAPVRETaAQtLGaL-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL 305 (800)
T 3oc3_A 241 ---------VAPVRDAAAYLLSRI-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLV 305 (800)
T ss_dssp ---------BCHHHHHHHHHHHHH-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHH
T ss_pred ---------eeehHHHHHHHHHHH-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHH
Confidence 223899999999999 888876 22222222 344556778888877666655333322 677888888
Q ss_pred HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCc--hhHHHHHHHHHHHHhhhcChhhhhhchHHHHH
Q 007842 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247 (587)
Q Consensus 170 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 247 (587)
..++|.+..||..++.+|..++ .+...+.++..+...+.+.+ ...-......|+.+...-......+.++|-+.
T Consensus 306 ~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~ 381 (800)
T 3oc3_A 306 SLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIF 381 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTG
T ss_pred hhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHH
Confidence 8999999999999999988888 22334445555444443322 22223344455555543322122346777777
Q ss_pred HhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007842 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (587)
Q Consensus 248 ~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (587)
.++.++-..||.++++++..+. ....+--++.+.+=+++.+++..+.+...
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 7888888899999998887655 11223334455666777888888777764
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.8e-08 Score=93.01 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=130.1
Q ss_pred HHHhccCCcHHHHHHHHHHHHccccccchh----HH---HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----
Q 007842 324 VKELSSDSSQHVRSALASVIMGMAPLLGKD----AT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---- 392 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---- 392 (587)
+...+.+++|..|..+++.+..+....... .. ...+.+.+...+.|.|..|...++.++..++...+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 556778899999999988877655433211 11 2234567778889999999999999998888765432
Q ss_pred ----hHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842 393 ----LLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (587)
Q Consensus 393 ----~~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
.....++|.+.+ .+.+....+|..+..++..++...+. ...+.+.+...++..++.+|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 223456776665 46888888998888888777665432 2335566777888999999999999999999888
Q ss_pred ChHH-----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH
Q 007842 468 GPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509 (587)
Q Consensus 468 ~~~~-----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~ 509 (587)
|... ..+.+++.+...+.|++..||.+|..+++.+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7642 23445666667788999999999999999998888854
No 99
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.93 E-value=1.5e-07 Score=79.31 Aligned_cols=184 Identities=12% Similarity=0.094 Sum_probs=150.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hh
Q 007842 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD 237 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~ 237 (587)
+..+..+..+++|.++.++..+..+++.+.+..+. ....+.+++-+..++.++++.|-..|++++..+....+. +.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34677888889999999999999999999988533 235567888888888999999999999999999887764 33
Q ss_pred hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH
Q 007842 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 317 (587)
....+...+.....+++.-.+..++..+|.+ ..-.....+...+.+++.+.+..++.+++.++-.++..-+.....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 5667888899999999999999999999987 212224568888899999999999999999999998877655555
Q ss_pred HhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (587)
Q Consensus 318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
+.++.-+..+++.+++.++.-+..++..+...
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 77778888888999999999999988887654
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.89 E-value=1.5e-08 Score=86.57 Aligned_cols=139 Identities=20% Similarity=0.226 Sum_probs=111.2
Q ss_pred hhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCCCccc
Q 007842 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (587)
Q Consensus 200 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~ 278 (587)
.+.++++...+.+++.+.||..|+..++.. . ....+++.+.. +..|++|.||..++..++.++...++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 467888999999999999999999988876 2 13568888887 88899999999999999999974443
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
+..++.+...++|++..||..|...+...+...........++|.+..+..|++..||.+.+..|..++..
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 34778889999999999999999886544432111222356789999999999999999999999988754
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.83 E-value=1.3e-09 Score=87.76 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=62.8
Q ss_pred hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 398 (587)
...+.+..+++|+++.+|..++..++.+... . +|.+...++|+++.||..++.+|+.+.. +..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a 74 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERA 74 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHH
Confidence 3345555666666666666666666555321 1 2555666666666666666666665542 233
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (587)
Q Consensus 399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
+|.+...+.|+++.+|..++.+++.+. .+..+|.+...++|+++.||..|+.+|+
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555555556666666666666665542 1223455555666666666666666554
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.74 E-value=1.4e-07 Score=80.65 Aligned_cols=136 Identities=10% Similarity=0.117 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 007842 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 476 (587)
Q Consensus 398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 476 (587)
+++....+.+++...+|..++..++.. . ..+..++.+.. +..|+.|.||+.+..+++.++...+++ ..
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~ 140 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KA 140 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TT
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HH
Confidence 334444444444445555554444333 1 01234444443 334455555555555555444322222 23
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
++.+.....|+|..+|..|+..+.-.+...........++|.+..+..|++.-||.++..+|-.+++.
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 44444444555555555554443221111111111234445555555555555555555555544443
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.74 E-value=7.2e-06 Score=87.91 Aligned_cols=564 Identities=8% Similarity=-0.028 Sum_probs=296.9
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-----CCcHHHHHHHHHHhc--cccccC-CCcc
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-----DDDDEVLLAMAEELG--VFIPYV-GGVE 82 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-----~~~~~v~~~~~~~l~--~l~~~~-~~~~ 82 (587)
+..|++.--|.=+++|..|=..+....+.+ ...+..++|.+.+.+ +.+.+....+...|. ++...+ .+..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~--~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~ 212 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQL--VGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK 212 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTB--TTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH
Confidence 466777777888999999988888766554 233456777666533 233445555555442 232222 3344
Q ss_pred hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh------------------h---------------h----HH--
Q 007842 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------------------S---------------D----LV-- 123 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------------------~---------------~----~~-- 123 (587)
+...+++.|......++|.|.+-+-.....+...... + . ..
T Consensus 213 ~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~ 292 (997)
T 1vsy_5 213 DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSL 292 (997)
T ss_dssp HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666677788877776665555542211 0 0 00
Q ss_pred -hhHHHHHHHHhcC-CC--CcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---
Q 007842 124 -DWYIPLVKRLAAG-EW--FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--- 196 (587)
Q Consensus 124 -~~l~~~l~~l~~~-~~--~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--- 196 (587)
..+...+.+.+++ .. +.....++..+..+..+.....-.+++.++.+.+.+++|.+|..+..++..+...+..
T Consensus 293 ~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~ 372 (997)
T 1vsy_5 293 LVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSD 372 (997)
T ss_dssp HHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1122222233323 35 6666666666444544444344567788888999999999999999888776665210
Q ss_pred ---------------c----------hhhhHHHHHHH-----H-hhhCC-c----------------------hhHHHHH
Q 007842 197 ---------------A----------HLKTDIMSIFE-----D-LTQDD-Q----------------------DSVRLLA 222 (587)
Q Consensus 197 ---------------~----------~~~~~l~~~l~-----~-l~~d~-~----------------------~~vr~~a 222 (587)
. .+.+.....+. . +.+.+ . ...-..+
T Consensus 373 ~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~i 452 (997)
T 1vsy_5 373 YEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELEV 452 (997)
T ss_dssp HTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHHH
T ss_pred CCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHHH
Confidence 0 11111111100 0 11000 0 0001111
Q ss_pred HHHH---------HHHhhh-----------------------------cChhhhhhchHHHHHHhccCCcHHHHHHHHHH
Q 007842 223 VEGC---------AALGKL-----------------------------LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQ 264 (587)
Q Consensus 223 ~~~l---------~~l~~~-----------------------------~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~ 264 (587)
.+.+ ..+... ++ ....+.+.+.+..+..|++..-.+.+++.
T Consensus 453 ~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~-~~~l~~l~~~~e~L~~~~dk~~qr~aaEi 531 (997)
T 1vsy_5 453 LKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFC-ELNMSDLFELCESYYNKDDKASMIMSVEI 531 (997)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTC-CCCGGGHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1111 111111 11 11345567777888888888888889999
Q ss_pred HHHHHHHhCCC------ccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHH-----------------------
Q 007842 265 LYELCEAVGPE------PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE----------------------- 314 (587)
Q Consensus 265 l~~~~~~~~~~------~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~----------------------- 314 (587)
++.+....... .....+.|.+.+.+. +-.++....-..++..+....++.
T Consensus 532 ~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ss 611 (997)
T 1vsy_5 532 VAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAA 611 (997)
T ss_dssp HHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCC
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcH
Confidence 88876543221 122357777777776 343333332222222222211110
Q ss_pred -------HH--------------HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----------------------
Q 007842 315 -------LA--------------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---------------------- 351 (587)
Q Consensus 315 -------~~--------------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---------------------- 351 (587)
.+ ...++..+. +.++...||......+..+....-
T Consensus 612 f~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 689 (997)
T 1vsy_5 612 THQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLG 689 (997)
T ss_dssp CCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSC
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhcccccccc
Confidence 00 012222222 567788999999888866543220
Q ss_pred ------hhHHHHhHHHHHHHhhc-------C--CChHHHHHHHHhhhhhh----hhhchh------hHHhh-HHHHHHHH
Q 007842 352 ------KDATIEQLLPIFLSLLK-------D--EFPDVRLNIISKLDQVN----QVIGID------LLSQS-LLPAIVEL 405 (587)
Q Consensus 352 ------~~~~~~~l~~~l~~~l~-------d--~~~~vr~~a~~~l~~l~----~~~~~~------~~~~~-~l~~l~~~ 405 (587)
...+.+.+...+ .-+. + .....+......+..+. ..++.. .+... ++|.+..+
T Consensus 690 ~~~~~~~~~~~~~i~~~f-~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l 768 (997)
T 1vsy_5 690 LPLKSVPEKVDAYIKKQF-EIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGL 768 (997)
T ss_dssp CCSSCCCHHHHHHHHHHH-HHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTT
T ss_pred CccccCcchHHHHHHHHH-HHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHH
Confidence 011111111111 1111 1 00001111111111111 111111 11111 44444444
Q ss_pred hcCCCh-HHHHH-HHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHh----ChHHHhhhhHH
Q 007842 406 AEDRHW-RVRLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEF----GPEWAMQHITP 478 (587)
Q Consensus 406 ~~~~~~-~vR~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~ 478 (587)
.+.++. ..... +..++..++...-+....+.++..+..... +++| +|.+++..+..+.-.. +.+ -...+..
T Consensus 769 ~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~ 846 (997)
T 1vsy_5 769 VKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILE 846 (997)
T ss_dssp SSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHH
T ss_pred hhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHH
Confidence 444432 32222 223343333322222223334444444344 5789 9999999988776421 222 1256788
Q ss_pred HHHhhccCCc-hhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC------------CChhHHHHHHHHHHHhhhhh
Q 007842 479 QVLEMINNPH-YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 479 ~l~~~l~d~~-~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d------------~~~~vR~~~~~~l~~l~~~~ 545 (587)
.+..++.|+. .+||+.|..+|+.+....+.......++..+.+.+.. ++...|-+++-+|+.++..+
T Consensus 847 ~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~ 926 (997)
T 1vsy_5 847 FVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF 926 (997)
T ss_dssp HHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC
Confidence 8888999999 9999999999999987652311222344444444421 11257888999999998877
Q ss_pred chH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842 546 DQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 546 ~~~----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~ 583 (587)
+.+ .+...++..|....+|+.+ |+..+.++++.+.++
T Consensus 927 Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 927 PYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp SCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 654 4667777777777788666 999999999998764
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.71 E-value=1.3e-06 Score=93.53 Aligned_cols=387 Identities=10% Similarity=0.019 Sum_probs=216.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc------chhhhHHHHHHHHhhh-CCchhHHHHHHHHHH
Q 007842 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCA 227 (587)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~ 227 (587)
..++...+.+.+.+..+..+.+..-.+.+++.++.+...... +...+.+.|++...+. +-.++....-..++.
T Consensus 500 n~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~ 579 (997)
T 1vsy_5 500 GFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAW 579 (997)
T ss_dssp TTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 344456778888899999999888999999999998776443 2456678888888887 455555544444454
Q ss_pred HHhhhcChhhhhhchHHHHHHh-----ccCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHH
Q 007842 228 ALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAA 301 (587)
Q Consensus 228 ~l~~~~~~~~~~~~l~~~l~~~-----~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~ 301 (587)
.+.....+. ....++..+..+ .+..+......-+..+..+....+-.. ....++..+. +..+...||+...
T Consensus 580 ~~~~~~Dpr-R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig 656 (997)
T 1vsy_5 580 WLPAVVDLR-RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVA 656 (997)
T ss_dssp HHHHHSCGG-GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHH
T ss_pred HHhcCCChh-hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHH
Confidence 444443332 223344444221 111111111222333333333333110 1233444444 5667788888888
Q ss_pred HhHHHHHhhhC----------------------------HHHHHHhH---hHHHHHhcc---C--C-----cH--HHHHH
Q 007842 302 GKVTKFCRILN----------------------------PELAIQHI---LPCVKELSS---D--S-----SQ--HVRSA 338 (587)
Q Consensus 302 ~~l~~l~~~~~----------------------------~~~~~~~i---~~~l~~~~~---d--~-----~~--~vr~~ 338 (587)
..|..+....- +..+.+.+ +..+..... + + +. ..-..
T Consensus 657 ~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kT 736 (997)
T 1vsy_5 657 KLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTST 736 (997)
T ss_dssp HHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHH
Confidence 88876655431 00111111 111111111 0 1 11 11122
Q ss_pred HHHHHHccccccch---hHHHHh-HHHHHHHhhcCCCh-HHHHH-HHHhhhhhhhhhchhhHHhhHHHHHHHHhc-CCCh
Q 007842 339 LASVIMGMAPLLGK---DATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHW 411 (587)
Q Consensus 339 a~~~l~~l~~~~~~---~~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~ 411 (587)
++..+......... ..+... ++|.++++.+..+. ++... +..++..+....-.....+.++..+.+... +++|
T Consensus 737 vl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW 816 (997)
T 1vsy_5 737 IFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN 816 (997)
T ss_dssp HHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS
T ss_pred HHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH
Confidence 23222222111101 111222 56666666555543 44443 334444443332223333455555555555 6799
Q ss_pred HHHHHHHHHHHHHHHh----hChhhhHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC
Q 007842 412 RVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486 (587)
Q Consensus 412 ~vR~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 486 (587)
.|..++..+..+.-. ++.+. ...+...+..+|.|+. .+||+.|..+|+-++...+.......++..+.+.+..
T Consensus 817 -~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~ 894 (997)
T 1vsy_5 817 -QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV 894 (997)
T ss_dssp -SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT
T ss_pred -HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 999999988776532 13322 3567888889999999 9999999999999987542312223455555444322
Q ss_pred ------------CchhHHHHHHHHHHHhhcccChH----HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842 487 ------------PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 487 ------------~~~~~R~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 547 (587)
.+...|.+++-.|+.+...++-. .+.+.++..|.+...|+.+ |+.++-++++.+-.....
T Consensus 895 ~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 895 NKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp TSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 12268899999999998865432 2456777888888888666 999999999998765443
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.28 E-value=0.00024 Score=67.40 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=129.1
Q ss_pred ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcH
Q 007842 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW 255 (587)
Q Consensus 176 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~ 255 (587)
++..++.+++.+..+.+.+ +...+.-+..+..++.|++..||..|+..|..++.. ...+.+..+|.++++.+++
T Consensus 41 ~~k~K~LaaQ~I~kffk~F--P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHF--PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGC--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 4667777777777777665 344455566666677777777777777766666654 2456667777777776666
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HHHHhHhHHHHHhccC
Q 007842 256 RVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSD 330 (587)
Q Consensus 256 ~vR~~a~~~l~~~~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d 330 (587)
..+..+-++|..+... .+.. +-..+..... .++.+|.-+++-|..-...++.+ .....+...+.+.++|
T Consensus 115 ~E~~~V~~sL~sllk~-----Dpk~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKM-----DAKGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED 188 (507)
T ss_dssp HHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc
Confidence 6555555555555543 1111 2222222222 34567766666665444433322 2223455555666666
Q ss_pred CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh------cCCChHHHHHHHHhh----hhhhhhhchhhHH----h
Q 007842 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKL----DQVNQVIGIDLLS----Q 396 (587)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l----~~l~~~~~~~~~~----~ 396 (587)
-...-=..+...+..+--. +...-.+.+++++.... .-.+.+.-...+.++ .-+........+. .
T Consensus 189 VT~~EF~L~m~lL~~lkl~-~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 189 VTGEEFVLFMKILSGLKSL-QTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp CCHHHHHHHHHHHHTSGGG-SSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcccc-cCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 5443223333333322111 11111234555554432 112333333333333 3333333333332 3
Q ss_pred hHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842 397 SLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 397 ~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
.++|.+..+... +....+...++.+..++...|........++.++..|
T Consensus 268 kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 268 QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 344443333221 1223666788888888888773333444555555444
No 106
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.24 E-value=0.00056 Score=68.17 Aligned_cols=326 Identities=13% Similarity=0.144 Sum_probs=179.9
Q ss_pred HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhccchhhhH-HHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcChh
Q 007842 160 LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD-IMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ 236 (587)
Q Consensus 160 ~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
...+.++.|. .+.+..-.+-|+.|+..|..+++..+. .+... +-+++..+-+|. +.++-+.++++|..+...-..+
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4444444444 455556677788888888877765532 23333 333333444442 3344445555554443211111
Q ss_pred hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH-
Q 007842 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL- 315 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~- 315 (587)
.. ... ........+.+.-..+.. ..+-++.++.++++.+..+|..+++.|..++...+...
T Consensus 97 ~~-~~~----------~~~~~~~~~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q 158 (651)
T 3grl_A 97 EV-EEN----------STRQSEDLGSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ 158 (651)
T ss_dssp ----------------------CHHHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cc-ccc----------ccccchHHHHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH
Confidence 00 000 000000111111111211 34678889999999999999999999999998765421
Q ss_pred --H--HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCCh----HHHHHHHHhhhh
Q 007842 316 --A--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQ 384 (587)
Q Consensus 316 --~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~ 384 (587)
+ .+.-++.+..+++|+...+|..++-.+..+...-.. -...+..++.++.++..+.. .|.+.++..+..
T Consensus 159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 1 135678899999999999999999999988764321 11233456777777765543 677777778888
Q ss_pred hhhhhchh--hHH-hhHHHHHHHHhcC----CChHHHH--H---HHHHHHHHHHhhCh---------hhhHHHHHHHHHH
Q 007842 385 VNQVIGID--LLS-QSLLPAIVELAED----RHWRVRL--A---IIEYIPLLASQLGV---------GFFDDKLGALCMQ 443 (587)
Q Consensus 385 l~~~~~~~--~~~-~~~l~~l~~~~~~----~~~~vR~--~---~~~~l~~l~~~~~~---------~~~~~~l~~~l~~ 443 (587)
+.+.-... .+. ...+|.+..+++. ..|.-+. . ++..+..+...-++ ..+...+++.+..
T Consensus 239 LLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ 318 (651)
T 3grl_A 239 LLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT 318 (651)
T ss_dssp HHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence 77653211 111 1234444444432 2354221 1 22333333221111 1122234555556
Q ss_pred hcCCC--chHHHHHHHHHHHHHHHHhCh--HHHh----------hhhHHHHHhhccCC-chhHHHHHHHHHHHhhc
Q 007842 444 WLQDK--VYSIRDAAANNLKRLAEEFGP--EWAM----------QHITPQVLEMINNP-HYLYRMTILRAISLLAP 504 (587)
Q Consensus 444 ~l~d~--~~~vr~~a~~~l~~l~~~~~~--~~~~----------~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~ 504 (587)
++..+ ...+|..|+.+++.+++.... +.+. ..++..+..++++. ...+|.+++.++..+..
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 55433 578999999999998863322 1221 22444455555554 57899999999998864
No 107
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.17 E-value=0.0004 Score=65.92 Aligned_cols=255 Identities=15% Similarity=0.098 Sum_probs=153.0
Q ss_pred CcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhH
Q 007842 139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSV 218 (587)
Q Consensus 139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~v 218 (587)
...+..|+..++.+++++ |+..+..+..+..+|+|++..||..+...|..++.. .+.+.+..+|.++++.+++.-
T Consensus 42 ~k~K~LaaQ~I~kffk~F-P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHF-PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHHHHHHHGGGC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHH
Confidence 445666777777888777 556777888888999999999999998888888875 557888888888888877766
Q ss_pred HHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCChH
Q 007842 219 RLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEA 294 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~d~~~ 294 (587)
+...-++|..+...-+.. .+..++.++.+ .+..+|..+++.|..-...++.+.. ...+...+.+.++|-..
T Consensus 117 ~~~V~~sL~sllk~Dpk~----tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 117 FNLVNNALLSIFKMDAKG----TLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHHHHHCHHH----HHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHHHHhcChHH----HHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 666666666665533222 22333333333 3578888888887766665555432 23466667777777543
Q ss_pred HHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc-----C-Cc----HHHHHHHHHHHHccccccchhHHHHhHHHHHH
Q 007842 295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-----D-SS----QHVRSALASVIMGMAPLLGKDATIEQLLPIFL 364 (587)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-----d-~~----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 364 (587)
+-=...+..|..+- ..+.-....++++.+..... + .+ .+....+-.++..+........+..++...++
T Consensus 192 ~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIl 270 (507)
T 3u0r_A 192 EEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVL 270 (507)
T ss_dssp HHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhc
Confidence 32222333332211 11111223455666655421 1 22 24445555566666655554444444444444
Q ss_pred HhhcCC-----ChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHH
Q 007842 365 SLLKDE-----FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (587)
Q Consensus 365 ~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~ 404 (587)
..+.+- .++.+...++.++.++...|........++.+.+
T Consensus 271 P~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~ 315 (507)
T 3u0r_A 271 PNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFD 315 (507)
T ss_dssp GGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred cchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHH
Confidence 344332 2347889999999999988832222344444444
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.05 E-value=0.00013 Score=63.99 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=97.4
Q ss_pred HHHHHHhcCCCch--HHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---H
Q 007842 438 GALCMQWLQDKVY--SIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E 509 (587)
Q Consensus 438 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~ 509 (587)
+|.+..++.+++. .++..|+.++..++..... .....-.+|.+.+++.+++..+|..|+.+|.+++..... .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5667777777776 7887888888777753211 122345678888888888888999999999988753211 1
Q ss_pred HHHhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhch-HHHHhhHHHHHHHhcC-------C---------CCccHHH
Q 007842 510 ITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTE-------D---------PDVDVRF 571 (587)
Q Consensus 510 ~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-------d---------~d~~Vr~ 571 (587)
......+|.++++++ .++..+|..++.+|.+++..-.. ..+.+..+|.|..++. | .+.+|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 124557888888887 46888999998888888754322 2233345666665331 1 2568888
Q ss_pred HHHHHHHHHH
Q 007842 572 FATQAIQSID 581 (587)
Q Consensus 572 ~a~~al~~l~ 581 (587)
+|..+|..+.
T Consensus 170 na~~~L~nLs 179 (233)
T 3tt9_A 170 NVTGCLRNMS 179 (233)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888887774
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.02 E-value=0.00055 Score=60.00 Aligned_cols=185 Identities=16% Similarity=0.084 Sum_probs=108.5
Q ss_pred HHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---hH
Q 007842 399 LPAIVELAEDRHW--RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PE 470 (587)
Q Consensus 399 l~~l~~~~~~~~~--~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~ 470 (587)
+|.+.+++.++++ .++..++..+..++..-. ........+|.+..+|.+++..+|..|+.+|..+..... ..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555554 555555555554443210 111122346777777777788888888888887764211 11
Q ss_pred HHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccC-hHHHHhhHHHHHHhhcC----------------CCChhHHH
Q 007842 471 WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASK----------------DRVPNIKF 532 (587)
Q Consensus 471 ~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~----------------d~~~~vR~ 532 (587)
....-.+|.+.+++. .++..+|+.+..+|-+++..-. ...+....+|.+..++. ..++.|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 123446777777776 4677788888877777764322 22233445666666442 12668999
Q ss_pred HHHHHHHHhhhhh-c-hHHHH--hhHHHHHHHhc------CCCCccHHHHHHHHHHHHHHh
Q 007842 533 NVAKVLQSLIPIV-D-QSMVE--KTIRPCLVELT------EDPDVDVRFFATQAIQSIDHV 583 (587)
Q Consensus 533 ~~~~~l~~l~~~~-~-~~~~~--~~i~~~l~~l~------~d~d~~Vr~~a~~al~~l~~~ 583 (587)
++..+|.+++..- . ...+. ..+++.|..++ .+.+...+.++..+|..|..-
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999987532 1 11121 23555555543 344667889999999887643
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.97 E-value=0.0049 Score=61.54 Aligned_cols=224 Identities=12% Similarity=0.082 Sum_probs=140.3
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--
Q 007842 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-- 430 (587)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-- 430 (587)
.-++.++.+++..+..+|..+++.|..++..-+.. .+ .+.-+|.+..++.|+...+|..++..+..+.+.-..
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 34788899999999999999999999998665432 11 134678899999999999999999999888764210
Q ss_pred -hhhHHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHHhC--hHHHh-hhhHHHHHhhccCC----chh--HHH---
Q 007842 431 -GFFDDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEFG--PEWAM-QHITPQVLEMINNP----HYL--YRM--- 493 (587)
Q Consensus 431 -~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~~--~~~~~-~~l~~~l~~~l~d~----~~~--~R~--- 493 (587)
-...+...+.++.++..+.. .|-.-++..+..+.+... ..+|. ...+|.+..++..+ .|. .-.
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~ 281 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH 281 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence 00112234556666654433 566667777777776432 23343 45677776666532 232 111
Q ss_pred HHHHHHHHhhcccCh---------HHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchH--HHH---------
Q 007842 494 TILRAISLLAPVMGS---------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--MVE--------- 551 (587)
Q Consensus 494 ~a~~~l~~l~~~~~~---------~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~--~~~--------- 551 (587)
.++.++.-+....+. ......+++.+++++..+ ...+|..++.+++.++...... .+.
T Consensus 282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~ 361 (651)
T 3grl_A 282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP 361 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence 244455555443221 113455777788876654 5679999999999987643221 111
Q ss_pred -hhHHHHHHHhcCCCC-ccHHHHHHHHHHHHH
Q 007842 552 -KTIRPCLVELTEDPD-VDVRFFATQAIQSID 581 (587)
Q Consensus 552 -~~i~~~l~~l~~d~d-~~Vr~~a~~al~~l~ 581 (587)
..++..+..+.++.. .++|..|+.+++...
T Consensus 362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 224444444455544 689999999887654
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.82 E-value=0.046 Score=57.01 Aligned_cols=190 Identities=9% Similarity=0.045 Sum_probs=106.6
Q ss_pred HhhHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHhhC--------hhhhHHHHHHHHHH--------h--cCCCchH
Q 007842 395 SQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLG--------VGFFDDKLGALCMQ--------W--LQDKVYS 451 (587)
Q Consensus 395 ~~~~l~~l~~~~~~~-----~~~vR~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~--------~--l~d~~~~ 451 (587)
.+..+|.+.+....+ ...+|..++.++..++-.+. .........+.... . -...+..
T Consensus 418 l~~~~P~l~~~~~~~~~~~~~~~l~~rAl~aLnNl~~~~~~~~~~~~~~~~~~~~w~~~~~~lw~~~~~~~~~~~~~d~~ 497 (684)
T 4gmo_A 418 IQTAVPQLIRLSNLPIDSDESLTIQSHALSALNNISWTISCLEFANGENANIHNAWYPTAKKIWRKTILPILEADSADLK 497 (684)
T ss_dssp HHTHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHHHHHHTHHHHHSSCCCCHH
T ss_pred HHHhhhhHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhhhccccccHH
Confidence 345566666654322 34678888888888764321 11111111111111 1 1345678
Q ss_pred HHHHHHHHHHHHHHHhChHHH-----hhhhHHHHHhhc-------------cCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842 452 IRDAAANNLKRLAEEFGPEWA-----MQHITPQVLEMI-------------NNPHYLYRMTILRAISLLAPVMGSEITCS 513 (587)
Q Consensus 452 vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l-------------~d~~~~~R~~a~~~l~~l~~~~~~~~~~~ 513 (587)
+...+..++..+.+.++.... ...++..+.... .++...+|..++.+||.++..-+.-....
T Consensus 498 l~~~~~s~lwa~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lrv~~ig~Lg~LA~~~~~~~~n~ 577 (684)
T 4gmo_A 498 LATQVTSLAWAVARVLHGETPTDGNPHRKFISLYHSSKQQAGGNSNSIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNR 577 (684)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCCTTCHHHHHHHHHHHHTTC-------------CTTSHHHHHHHHHHHHTSTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHHHHHHHhcCCCCcHHHHH
Confidence 888888888888887654310 111222111111 12234589999999999998776655555
Q ss_pred hHHHHHHhhc---CCCChhHHHHHHHHHHHhhhh--hch--H--------HHHhhHHHHHHHhc-C-CC--CccHHHHHH
Q 007842 514 RLLPVVINAS---KDRVPNIKFNVAKVLQSLIPI--VDQ--S--------MVEKTIRPCLVELT-E-DP--DVDVRFFAT 574 (587)
Q Consensus 514 ~il~~l~~~l---~d~~~~vR~~~~~~l~~l~~~--~~~--~--------~~~~~i~~~l~~l~-~-d~--d~~Vr~~a~ 574 (587)
.|-.+++..+ .++.+++-..++.++--+..- ++. . .....++|.++... . |+ +++.|..+-
T Consensus 578 ~Ig~fLl~~l~~~~~~~~~v~~EalnaifDIyaD~~~~yD~~Vf~~~~~l~~L~~~vp~~k~~~K~idK~k~~elr~r~~ 657 (684)
T 4gmo_A 578 EVGVFLVTLLRQSNNVPPAEIVEALNQLFDIYGDEELACDKEVFWKDGFLKHLEEFLPKMRTLTKGIDKRTQPELRTRAD 657 (684)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHSCCTTSHHHHHTTTTTTHHHHHHHHHHHHHHHHHTSCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCccccHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5555666543 456677755555555555431 111 1 22356778887743 2 44 568899999
Q ss_pred HHHHHHHHhh
Q 007842 575 QAIQSIDHVM 584 (587)
Q Consensus 575 ~al~~l~~~~ 584 (587)
.++..|...+
T Consensus 658 e~~~NL~rFI 667 (684)
T 4gmo_A 658 EALLNLGRFV 667 (684)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887765
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.31 E-value=0.033 Score=61.07 Aligned_cols=158 Identities=9% Similarity=0.012 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhCC--Cccc----cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHH
Q 007842 253 KSWRVRYMVANQLYELCEAVGP--EPTR----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE 326 (587)
Q Consensus 253 ~~~~vR~~a~~~l~~~~~~~~~--~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 326 (587)
.++.+|..++-++|.++..... .... ..+...+.+.+...+.+-+..++++|+.++. +..++.+.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~ 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence 4678999999999999875421 1112 2344445555566667778888999988865 233455555
Q ss_pred hcc-------CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh--cCCChHHHHHHHHhhhhhhhhhchhhHHhh
Q 007842 327 LSS-------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 327 ~~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (587)
++. +...++|.+|+.+|..++...+ ..+-+++.+.. ...++++|.+|+..|-.-.+. ..
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~-------~~ 546 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPS-------VA 546 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC-------HH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC-------HH
Confidence 542 2346899999999999874322 23445556665 456799999999888654332 12
Q ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhCh
Q 007842 398 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV 430 (587)
Q Consensus 398 ~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~ 430 (587)
++..+...+ .+++..|+..+...+..+++.-.+
T Consensus 547 ~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 344444433 567888888888877777765433
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.29 E-value=0.012 Score=64.47 Aligned_cols=160 Identities=11% Similarity=0.014 Sum_probs=102.9
Q ss_pred hhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhC------hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007842 396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (587)
Q Consensus 396 ~~~l~~l~~~~~~----~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
..++..+..++++ .++.+|..++-.++.++.... +....+.+...+...+...+..-+..++.+||++..
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3456666666655 467889988888888886542 222345566666677777778888899999998763
Q ss_pred HhChHHHhhhhHHHHHhhccC-------CchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhc--CCCChhHHHHHHH
Q 007842 466 EFGPEWAMQHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS--KDRVPNIKFNVAK 536 (587)
Q Consensus 466 ~~~~~~~~~~l~~~l~~~l~d-------~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l--~d~~~~vR~~~~~ 536 (587)
...++.+..++.. ...++|.+|+.++..+.... + ..+-+.+.+.. ...++++|.+|+.
T Consensus 470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p----~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-P----RKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-H----HHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-h----HHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 2345666665532 23578899999999998532 2 23444555555 4568999999999
Q ss_pred HHHHhhhhh-------------chHHHHhhHHHHHHHhcCCCCcc
Q 007842 537 VLQSLIPIV-------------DQSMVEKTIRPCLVELTEDPDVD 568 (587)
Q Consensus 537 ~l~~l~~~~-------------~~~~~~~~i~~~l~~l~~d~d~~ 568 (587)
.|-...+.. ....+.+.+...|..+.+..+|.
T Consensus 537 ~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 537 VFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 887543321 11234455566666665555553
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.19 E-value=0.16 Score=47.78 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc----
Q 007842 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL---- 233 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---- 233 (587)
+....++++.+..+..|++.+||+.++..++..+.. ..++....++.+..++.|+++.|.+.++.+...+....
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888888888888887764 45566778888888888888888887777776655321
Q ss_pred ---Ch-----hhhhhc---hHHHHHHhccCCcHHHHHHHHHHHHHHHHHh
Q 007842 234 ---EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (587)
Q Consensus 234 ---~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~ 272 (587)
+. +..|+. +...+....+..+..||..+++.+..++-..
T Consensus 136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 10 123333 3344555667778999999999999988644
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.94 E-value=0.19 Score=44.44 Aligned_cols=128 Identities=14% Similarity=0.215 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHH
Q 007842 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 452 (587)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 452 (587)
+.+...+.....++-.-.+ .+.+.+++.+.++..+++..+|..++++++..+.. ...+...+++.+..++.|+++.|
T Consensus 30 ~~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 4555555555554333222 24466677777777777788888888877776643 23455667777777778888888
Q ss_pred HHHHHHHHHHHHHHh-------Ch-------HH-HhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842 453 RDAAANNLKRLAEEF-------GP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (587)
Q Consensus 453 r~~a~~~l~~l~~~~-------~~-------~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~ 503 (587)
...++.+.+.+++.. +. .| ....+-..+..+..+.+..+|..+++++..+.
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 888877777776532 11 11 11233344555566678888999888888876
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.88 E-value=0.3 Score=45.89 Aligned_cols=183 Identities=12% Similarity=0.110 Sum_probs=113.0
Q ss_pred HHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHH
Q 007842 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 453 (587)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 453 (587)
.+...+..+..++-.-.+ .+.+.++|.+.++..|++..+|..++++++..+.. .. .+...+++.+..++.|++..|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~-el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DI-ELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CG-GGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHcCCCHHHH
Confidence 455556555554332222 24467788888888888888888888888877653 22 2346677778888888888888
Q ss_pred HHHHHHHHHHHHHh--------C------hHH-HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----------
Q 007842 454 DAAANNLKRLAEEF--------G------PEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------- 508 (587)
Q Consensus 454 ~~a~~~l~~l~~~~--------~------~~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---------- 508 (587)
..++.+.+.++... + ..| ....+-..+..+..+.+..+|..+++++..+......
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~ 197 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRR 197 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 88888877776421 1 112 1133444455556677888999999888887631100
Q ss_pred ----------------------HHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHh
Q 007842 509 ----------------------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 561 (587)
Q Consensus 509 ----------------------~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l 561 (587)
+.-...++..+++.+.++ ++..=.+++.+|+.++..= ..+...|++++..+
T Consensus 198 ~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R--P~~~~rIl~aL~~l 272 (386)
T 3o2t_A 198 QEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR--PMFMSEVIQAYETL 272 (386)
T ss_dssp GTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHH
T ss_pred cCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHhh
Confidence 011345667777777653 3334455667777666541 23446777777664
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.81 E-value=0.24 Score=43.74 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc---
Q 007842 157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL--- 233 (587)
Q Consensus 157 ~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--- 233 (587)
++....++++.+..+..|++.++|+.++..+...+.. .+.+....++.+..++.|+++.|.+.++.+...+....
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888889999999999999888754 46677888889999999999999888888777665431
Q ss_pred ----Ch-----hhhhhc---hHHHHHHhccCCcHHHHHHHHHHHHHHHHHh
Q 007842 234 ----EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (587)
Q Consensus 234 ----~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~ 272 (587)
+. +..|+. +...+....+..+..||..+++.+..+.-..
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 11 223333 3444556667778899999999999887543
No 118
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.66 E-value=0.0089 Score=62.37 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=53.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhccCC--------------c-------hhHHHH
Q 007842 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNP--------------H-------YLYRMT 494 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~--------------~-------~~~R~~ 494 (587)
++..++.|++.+||.+|+.+|++++...|.+. +...+++.+..+++.. . +.+-..
T Consensus 80 ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (684)
T 4gmo_A 80 VLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGS 159 (684)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 33445566666666666666666655444332 2233444443333210 0 122233
Q ss_pred HHHHHHHhhcccChH---HHHhhHHHHHHhhcCC---CChhHHHHHHHHHHHhhhhh
Q 007842 495 ILRAISLLAPVMGSE---ITCSRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 495 a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d---~~~~vR~~~~~~l~~l~~~~ 545 (587)
++.++..++...+.. ......+|.++..+.+ ....++..++.+|..+....
T Consensus 160 ~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 160 LLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 445555555432221 1223455666665532 24679999999999887653
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.97 E-value=0.44 Score=39.80 Aligned_cols=140 Identities=12% Similarity=0.125 Sum_probs=88.3
Q ss_pred HHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC------CChHHHHHHHHHHHHHHHh--hChhhhHHHHHHHHHHh
Q 007842 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 444 (587)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~------~~~~vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~ 444 (587)
..|..|+..+.. .-|. ..++|.+..++.+ .++..=...++....+... +.-+.+...++|.++.+
T Consensus 23 ~~r~~aL~sL~~---D~gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEK---ESGL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHH---CSSC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCh----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 346666666554 3333 3455655554322 3555444455555555543 33455667788888776
Q ss_pred cCC---CchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHHHHhhHHH
Q 007842 445 LQD---KVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP 517 (587)
Q Consensus 445 l~d---~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~il~ 517 (587)
+-. ....+|..|+..++.+++.++.. .....+...+.+.+.|+ +...+..|+..+..++. +.+...++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~----~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK----NVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH----HHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH----HHHHHhhhc
Confidence 521 12289999999999999998874 35567777777777775 56788888888877654 445555667
Q ss_pred HHHhhc
Q 007842 518 VVINAS 523 (587)
Q Consensus 518 ~l~~~l 523 (587)
.+-...
T Consensus 172 ~l~~~~ 177 (196)
T 4atg_A 172 HAEEYK 177 (196)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 665554
No 120
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.43 E-value=0.33 Score=38.36 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=43.4
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
+..+.+-+++.++.+...|+..+..+.+++|..+. ...++..+.++++..++.||..++..+..+...++.+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33444444555555666666666666666665432 2334444555554567888888888888887766544
No 121
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.39 E-value=4.6 Score=36.83 Aligned_cols=126 Identities=14% Similarity=0.235 Sum_probs=90.1
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHh---ChHHHh---hhhHHHHHhhccCCchhHHHHHHHHHHHhhccc-ChHHH-
Q 007842 440 LCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAM---QHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEIT- 511 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~---~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~-~~~~~- 511 (587)
.++.+++.++.+|-.-|..++..+.... -.+++. +.++.....++.++|+-+|..+++.||.+.-.- ....+
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~ 247 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 247 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence 3556788899999988888888886531 123322 456777777899999999999999999997421 11111
Q ss_pred ----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc-hH-------HHHhhHHHHHHHhcCCC
Q 007842 512 ----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-QS-------MVEKTIRPCLVELTEDP 565 (587)
Q Consensus 512 ----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~-~~-------~~~~~i~~~l~~l~~d~ 565 (587)
.+.-+..+..+++|++.+++..|...+..++..-. +. .-.+.++..+..+..|+
T Consensus 248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 24457788889999999999999999887764321 11 12356778888888877
No 122
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.41 E-value=1 Score=35.86 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhhchH
Q 007842 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
+..-++++|+.+...|+..+..+.+++|..+. ...++..+.+++.+ .++.||..++..+..+...++..
T Consensus 53 l~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 53 LAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33334455555555555555555555554432 23445555555543 46678888888888777666443
No 123
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.39 E-value=3.2 Score=33.03 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=52.2
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhh
Q 007842 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~ 545 (587)
.+..+..-++++|+.+...|+..+..+.+++|..+. ...++..+.+++.+ .++.||..++..+..+...+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344455556677788888888888888888776542 35577777777654 36789999998888888777
Q ss_pred chH
Q 007842 546 DQS 548 (587)
Q Consensus 546 ~~~ 548 (587)
+..
T Consensus 119 ~~~ 121 (148)
T 1mhq_A 119 PED 121 (148)
T ss_dssp TTC
T ss_pred CCC
Confidence 544
No 124
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=92.27 E-value=2.1 Score=37.00 Aligned_cols=131 Identities=6% Similarity=-0.032 Sum_probs=86.0
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 007842 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~ 283 (587)
..+..+...+..+.|..++..+......+.+ ..++.+...+. .++|.+-...+.+++.+... .+..+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence 4555556666777888888877765443332 22344444443 46788777766667776653 2344677
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
.+.....|++.-+|..++.++-..... .....+++.+..++.|++..||.+...+|..++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKEK----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGGG----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 788888888877777777655322221 12245577777788999999999999999888754
No 125
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=92.02 E-value=5.7 Score=34.54 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=92.8
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc-cCCcHHHHHHH-HHHHHHHHHHhCCCccccchH
Q 007842 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRMDLV 282 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~a-~~~l~~~~~~~~~~~~~~~l~ 282 (587)
..+..+..++..+.|..|+..+......+.++ .++.+...+ ..++|.+-... ...++.+... .+....
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----~p~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----HPELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----CGGGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----CHHHHH
Confidence 45555666677778888887776544433332 122222222 35678875555 3566776654 123355
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHH
Q 007842 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 362 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 362 (587)
+.+.....|++.-+|..++..+-........ ..+.+.+...+.|++..||.+...+|..++...+ +.+.++
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~----~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p-----~~v~~f 204 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQKMDE----ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP-----DVVWEY 204 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH-----HHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhCCCH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH-----HHHHHH
Confidence 6677777888777777766654222211111 3456667778899999999999999998876532 234444
Q ss_pred HHHhhcCCChHHHHHHHHhhh
Q 007842 363 FLSLLKDEFPDVRLNIISKLD 383 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~ 383 (587)
+.+. .-++-++..|++.|.
T Consensus 205 l~~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 205 VQNN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHS--CCCHHHHHHHTTTTH
T ss_pred HHHC--CCCHHHHHHHHHhcc
Confidence 4443 233445555555443
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.85 E-value=7.4 Score=35.48 Aligned_cols=184 Identities=9% Similarity=0.046 Sum_probs=114.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hChhh-----h--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-
Q 007842 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGF-----F--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE- 466 (587)
Q Consensus 396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~-~~~~~-----~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~- 466 (587)
..++..+...+..=++..|..+...+..+.+. .|... + .+.++..+.....+++... .+-..|...++.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl--~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh--HHHHHHHHHHHhH
Confidence 34555566666666777777777766666542 12110 1 1345666666666555332 122222222211
Q ss_pred -hChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HH---HHhhHHHHHHhhcCCCChhHHHHHHHHHH
Q 007842 467 -FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EI---TCSRLLPVVINASKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 467 -~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~ 539 (587)
+..-.+....+-.+.+....++..+-.-|...+..+...... ++ ..+.++....+++.++++..|..+++.|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 000011223344666788889999988888888887643221 11 13567777888999999999999999999
Q ss_pred HhhhhhchH----HH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 540 SLIPIVDQS----MV--EKTIRPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 540 ~l~~~~~~~----~~--~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
.+...-... .+ ...-+..+..++.|+..+++.-|-..++-+.
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 987542222 11 1345788888999999999999998887653
No 127
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=90.44 E-value=3.7 Score=35.41 Aligned_cols=132 Identities=8% Similarity=-0.010 Sum_probs=86.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (587)
Q Consensus 400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 478 (587)
..+..+..++....|..++..++...+.+ .+..++.+..++. -++|.+-...+.+++.++.... +.+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~-----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHH
Confidence 55566667777778888777776543222 2344666666664 4567777766666666654322 33567
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
.+.....+++..+|..++.+.-.... +.....+++.+...+.|+..-||.++..+|..++...
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 77788888887777777664422221 1123556777777889999999999999999988763
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.24 E-value=4 Score=33.41 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=63.9
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhh
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~ 543 (587)
...+..+.+-++++|+.+...|+..+..+.+++|..+. ...++..+.+++.. .+..||..++..+..+..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556666777889999999999999999999887653 35567777777652 468999999999999998
Q ss_pred hhchHHHHhhHHHHHHH
Q 007842 544 IVDQSMVEKTIRPCLVE 560 (587)
Q Consensus 544 ~~~~~~~~~~i~~~l~~ 560 (587)
.++...........|..
T Consensus 129 ~f~~~~~i~~~y~~Lk~ 145 (171)
T 1juq_A 129 ALPEEAKIKDAYHMLKR 145 (171)
T ss_dssp HCTTCHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHH
Confidence 87665433334444443
No 129
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=90.15 E-value=3.3 Score=36.09 Aligned_cols=60 Identities=10% Similarity=-0.012 Sum_probs=28.5
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 007842 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~ 269 (587)
.+.....+++.-+|+.|+..+-. .. .......+.+.+.....|++..||.+..-.|..++
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~---~~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLK---YK-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYA 194 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTT---CG-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCchHHHHHHHHHHHH---HH-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443211 11 11112234455555566666666666666555544
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.02 E-value=1.3 Score=36.04 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhhhchH
Q 007842 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
+.+-++++++.+...|+..+..+.+++|..+. ...++..+.++++. .++.||..++..+..+...++..
T Consensus 57 l~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 57 IMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33334445555555555555555555554332 13344444444433 46688888888888777766543
No 131
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.69 E-value=8.1 Score=32.25 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH--hChHHHhhhhHHHHHhhccCC-
Q 007842 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNP- 487 (587)
Q Consensus 413 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~- 487 (587)
.|..+++. +...-|-....++++..+..... -.+...-...+.....+... +.-+.+...++|.++..+-..
T Consensus 24 ~r~~aL~s---L~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 24 MKDIAIEC---LEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp THHHHHHH---HHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH---HhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 35555443 34444544443433333322221 12444444455555555542 122345567788776653221
Q ss_pred --chhHHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHh
Q 007842 488 --HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 561 (587)
Q Consensus 488 --~~~~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l 561 (587)
...+|.-|...++.++..+|.. ...+++...+.+.+.|+ +...+..|+..|..+. ++.+...++|.+..+
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP~l~~~ 176 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIREHAEEY 176 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhcCHHHH
Confidence 2279999999999999988763 35678888888888775 5567777887777664 455556677888776
Q ss_pred cC
Q 007842 562 TE 563 (587)
Q Consensus 562 ~~ 563 (587)
.+
T Consensus 177 ~~ 178 (196)
T 4atg_A 177 KR 178 (196)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=88.14 E-value=2.6 Score=36.43 Aligned_cols=73 Identities=8% Similarity=0.111 Sum_probs=44.8
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhchH
Q 007842 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
.+..+.+-++++|+.+...|+..+..+.++.|..+. ...++..+.++++ .+++.||..++..+..+...+..+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 344455555666667777777777777766665432 2334444444332 346788888888888887776544
No 133
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=87.78 E-value=4.6 Score=32.52 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=54.9
Q ss_pred hhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHH----HhhHHHH-HHhhcC---CCChhHHHHHHHHHHHhhhh
Q 007842 474 QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASK---DRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 474 ~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~---d~~~~vR~~~~~~l~~l~~~ 544 (587)
...+..+.+-++ ++|+.+...|+..+..+.+++|..+. ...++.. +.+.+. ++...||..++..+..+...
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 344556666666 57899999999999999999998653 2446665 566553 34568999999999999877
Q ss_pred hch
Q 007842 545 VDQ 547 (587)
Q Consensus 545 ~~~ 547 (587)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 653
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.97 E-value=10 Score=30.12 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=66.7
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (587)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~ 482 (587)
.+++|..-..++..+.. .+ .-....+..+.+.+.+.++.+...|+..|..+++..|..|. ...++..+..
T Consensus 25 ~~~dw~~ileicD~I~~-----~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k 98 (149)
T 3g2s_A 25 KELDWASINGFCEQLNE-----DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK 98 (149)
T ss_dssp SSCCHHHHHHHHHHGGG-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHC-----CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 45677654444333321 11 11334566777788899999999999999999999988763 3567777777
Q ss_pred hccC------CchhHHHHHHHHHHHhhcccCh
Q 007842 483 MINN------PHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 483 ~l~d------~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
++.+ .+..||...+..+..-...++.
T Consensus 99 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 99 VVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 7654 4678999999988888776654
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.58 E-value=10 Score=29.76 Aligned_cols=74 Identities=9% Similarity=-0.020 Sum_probs=47.3
Q ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh----hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007842 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (587)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~ 276 (587)
.+..+..-++..++.+...|+..+..+...+++... ...++.-+..+++..++.||..+...+...+..++.+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 444455555666777777788888888877776321 22234444444445677888888888888877776543
No 136
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=86.35 E-value=3.9 Score=31.46 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=12.2
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHH
Q 007842 476 ITPQVLEMINNPHYLYRMTILRAISL 501 (587)
Q Consensus 476 l~~~l~~~l~d~~~~~R~~a~~~l~~ 501 (587)
++|.|+..++|.||.+....+..+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~ 57 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVL 57 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 44444445555555544444444433
No 137
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=85.40 E-value=27 Score=33.55 Aligned_cols=250 Identities=11% Similarity=0.105 Sum_probs=124.8
Q ss_pred cCCcHHHHHHHHHHHHHHHHH--hCC----CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh-CHHHH-HHhHhH
Q 007842 251 QDKSWRVRYMVANQLYELCEA--VGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPELA-IQHILP 322 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-~~~i~~ 322 (587)
.|++|.--..+.+.+-.+... +.. ......++--++.++.++|+.-|......|..+-..+ +...+ ...+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888877653 222 1223357777888899999999998888887776543 22222 122222
Q ss_pred HHHHhccCCc-HHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCCh-HHHHHHHHhhhhhhhhhchhhHHhh
Q 007842 323 CVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 323 ~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (587)
.+.+.+.... ..=-..+.+.++.+...+. ++.....+...+..+.+...- .-......++..+.+.- ..+...
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~ 284 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP 284 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHH
Confidence 2223221111 0001123333333333221 223333333334444443321 11122223333332210 111123
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHH---HHHhcCCCchHHHHHHHHHHHHH--HHHhChHHH
Q 007842 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWA 472 (587)
Q Consensus 398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~ 472 (587)
++..+...---.+..-....+..++.+...+++..|.....|+ +-.++.+++..|-+.|+..+.+= ...+.. .
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n 362 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--N 362 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--T
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--c
Confidence 3333333322234444455677777788777777776554444 44567888999988888665321 111110 1
Q ss_pred hhhhHHHHHhhc----cCC-chhHHHHHHHHHHHhhc
Q 007842 473 MQHITPQVLEMI----NNP-HYLYRMTILRAISLLAP 504 (587)
Q Consensus 473 ~~~l~~~l~~~l----~d~-~~~~R~~a~~~l~~l~~ 504 (587)
...++|.+...+ +.. +..+|..+..++..+.+
T Consensus 363 ~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 363 AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 233445444322 222 55678888777776554
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.17 E-value=14 Score=29.27 Aligned_cols=96 Identities=7% Similarity=-0.006 Sum_probs=66.7
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (587)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~ 482 (587)
.+++|..-..++..+..= + .-....+..+...+++.++.+...|+..|..+++..|..|. ...++..+..
T Consensus 15 ~~~dw~~~leicD~I~~~-----~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k 88 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTD-----P-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK 88 (148)
T ss_dssp SSCCHHHHHHHHHHHHHS-----S-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 457786644444433221 1 11234556677778899999999999999999999998753 3567777777
Q ss_pred hccC------CchhHHHHHHHHHHHhhcccCh
Q 007842 483 MINN------PHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 483 ~l~d------~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
++.+ .+..||..++..+..-+..++.
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7654 3678999999888887766543
No 139
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=83.74 E-value=21 Score=31.04 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=87.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHH
Q 007842 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (587)
Q Consensus 11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (587)
+..++..|.++ +.|..|+..|++-. ....++-|.++.....-.-..+++...-+.+.+ +. +
T Consensus 5 i~qli~~L~~p--~~Re~AL~eLsk~R------e~~~~La~~LW~S~Gtia~LLQEIisiYp~lsp----p~----L--- 65 (268)
T 2fv2_A 5 IYQWINELSSP--ETRENALLELSKKR------ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINP----PT----L--- 65 (268)
T ss_dssp HHHHHHHTSST--TTHHHHHHHHHHHT------TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTT----BC----C---
T ss_pred HHHHHHHhcCc--hhHHHHHHHHHHhh------hccccHHHHHHhccCHHHHHHHHHHHHcccCCC----cc----c---
Confidence 45566666644 46999998886532 234577888887544222333333333333321 11 0
Q ss_pred HhhhhcchhhHHHH-HHHHHHHHHHhhcCh------hhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHH-
Q 007842 91 LETLCTVEETCVRD-KAVESLCRIGSQMRE------SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK- 161 (587)
Q Consensus 91 l~~l~~~~~~~vr~-~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~- 161 (587)
.....-|- .|+.-+..++.+-.. .++--++.|++....++. .+..|.++.+.+|.+.+.-+++..
T Consensus 66 ------t~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~ 139 (268)
T 2fv2_A 66 ------TAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVIN 139 (268)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHH
T ss_pred ------CHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHH
Confidence 01111121 222222333332211 123445777776444433 355688888888888876655532
Q ss_pred ----HHHHHHHHHhcCCCChHHHHHHHHhHHHHHH
Q 007842 162 ----TELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (587)
Q Consensus 162 ----~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~ 192 (587)
.+++|++...++.++..-|..|.-.+.++..
T Consensus 140 fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 140 FLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 4678888888888888878777777777654
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.70 E-value=16 Score=29.53 Aligned_cols=75 Identities=11% Similarity=-0.025 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh----hhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCC
Q 007842 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE 275 (587)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~ 275 (587)
...+..+..-++..++.+...|+..|..+...+++... ...++.-+.+++.. .++.||..+...+......++..
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33445555556667778888888888888888776321 12233333343333 56788888888888877777654
No 141
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.60 E-value=31 Score=31.47 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHHHHHHH---HhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc-ChHHH--HhhHHHHHHh
Q 007842 448 KVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEIT--CSRLLPVVIN 521 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~-~~~~~--~~~il~~l~~ 521 (587)
.+...+..++..|..+.+ .+-.+|....-+..+..+..+.+..+..-++.+++.+..+. |-.-+ .+.++..+..
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys 209 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT 209 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH
Confidence 444445555555555332 23334444455566666666666666666666666666531 11111 2334455555
Q ss_pred hcCCCChhHHHHHHHHHHHhhhh
Q 007842 522 ASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 522 ~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
++......|-..+++.|..++..
T Consensus 210 lv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 210 LCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHcc
Confidence 55556666666666666666544
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=80.87 E-value=21 Score=29.04 Aligned_cols=73 Identities=5% Similarity=-0.017 Sum_probs=49.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh----HHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHH
Q 007842 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQD------KVYSIRDAAANNLKRLAEE 466 (587)
Q Consensus 397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~ 466 (587)
..+..+...+++.++.+...++..+..+.+..|..+. ...++.-+..++.. ....||..++..+..+...
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556666667778888888888888888877665432 13345555555542 3577888888888888776
Q ss_pred hCh
Q 007842 467 FGP 469 (587)
Q Consensus 467 ~~~ 469 (587)
++.
T Consensus 130 f~~ 132 (171)
T 1juq_A 130 LPE 132 (171)
T ss_dssp CTT
T ss_pred cCC
Confidence 654
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.72 E-value=18 Score=31.10 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=64.5
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (587)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~ 482 (587)
.+++|..-..++..+. . +. .-....+..+..-++..++.|...|+..|..+++..|..+. ...++..|..
T Consensus 22 ~~~dw~~ileicD~I~---~--~~-~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 22 LETDWESILQICDLIR---Q--GD-TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp SSCCHHHHHHHHHHHH---T--TS-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh---C--CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 4567876444444432 1 11 11344566777888899999999999999999999888653 2455555555
Q ss_pred hcc-CCchhHHHHHHHHHHHhhcccCh
Q 007842 483 MIN-NPHYLYRMTILRAISLLAPVMGS 508 (587)
Q Consensus 483 ~l~-d~~~~~R~~a~~~l~~l~~~~~~ 508 (587)
+++ ..+..||..++..+..-+..+..
T Consensus 96 l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 543 34678888888888887765543
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=78.58 E-value=40 Score=30.81 Aligned_cols=111 Identities=6% Similarity=-0.021 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHH-hChHHH--hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH--HHH
Q 007842 438 GALCMQWLQDKVYSIRDAAANNLKRLAEE-FGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITC 512 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~--~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~--~~~ 512 (587)
+..++....+.+.+....++.+++.+... .|.+.+ ...++..+..++.+.+..+-+.|+..|..+....... .+.
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 45566667777888888888888888653 233222 2456777777777777778888888888877654211 111
Q ss_pred hh-----------HHHHHHhhcC---CCChhHHHHHHHHHHHhhhhhchH
Q 007842 513 SR-----------LLPVVINASK---DRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 513 ~~-----------il~~l~~~l~---d~~~~vR~~~~~~l~~l~~~~~~~ 548 (587)
.. -++.+...++ ..+.++...++..+-.+....+.+
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCCh
Confidence 11 1446666675 568888888888887777766543
No 145
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=76.92 E-value=13 Score=28.94 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=46.3
Q ss_pred HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHH---HHHHHhc-----CCC----C--ccHHHHHHHHH
Q 007842 512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR---PCLVELT-----EDP----D--VDVRFFATQAI 577 (587)
Q Consensus 512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~---~~l~~l~-----~d~----d--~~Vr~~a~~al 577 (587)
...+++.|.+.+++++++++..+++.|..++.+-. +.|...+. ..+..+. -|+ | .+||..|..++
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 47889999999999999999999999999886543 33222221 2233332 121 1 46888888887
Q ss_pred HHHH
Q 007842 578 QSID 581 (587)
Q Consensus 578 ~~l~ 581 (587)
+-|.
T Consensus 126 ~ll~ 129 (140)
T 1vdy_A 126 SAIF 129 (140)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7664
No 146
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=72.48 E-value=66 Score=30.36 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHHhhcccChHHHH---hhHHHHHHhhcCCCChhHHHHHHHHHHH-----hhhhhchHHHHhhHHHHHH
Q 007842 488 HYLYRMTILRAISLLAPVMGSEITC---SRLLPVVINASKDRVPNIKFNVAKVLQS-----LIPIVDQSMVEKTIRPCLV 559 (587)
Q Consensus 488 ~~~~R~~a~~~l~~l~~~~~~~~~~---~~il~~l~~~l~d~~~~vR~~~~~~l~~-----l~~~~~~~~~~~~i~~~l~ 559 (587)
+..-....+.-+..+....++..+. ..++..+.+++++++..|-..|+....+ ++.. ........+.|.|.
T Consensus 264 ns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~-n~~~IlPii~p~L~ 342 (403)
T 3fga_B 264 HSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD-NAAKILPIMFPSLY 342 (403)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 4445555666666777766665542 3344555566777777777766654421 1111 11123344555555
Q ss_pred Hh-cCCCCccHHHHHHHHHHHHHH
Q 007842 560 EL-TEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 560 ~l-~~d~d~~Vr~~a~~al~~l~~ 582 (587)
+. .+.=...||..+..+++.+.+
T Consensus 343 ~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 343 RNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHHHH
Confidence 53 334466788888888777654
No 147
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=71.80 E-value=58 Score=29.46 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=70.8
Q ss_pred hHHHHHhhccC-CchhHHHHHHHHHHHhhccc-ChHHH---HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---
Q 007842 476 ITPQVLEMINN-PHYLYRMTILRAISLLAPVM-GSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--- 547 (587)
Q Consensus 476 l~~~l~~~l~d-~~~~~R~~a~~~l~~l~~~~-~~~~~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--- 547 (587)
++..+...+.+ .++..+..+++++.++...- |..++ ...+++.+...+.+++.++|.+++..+-+++-..-.
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~ 227 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN 227 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence 33344444432 34556899999999987632 33322 345677777777788999999999999988764321
Q ss_pred HHHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHHHH
Q 007842 548 SMVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 548 ~~~~~~i~~~l~~l~-~d~d~~Vr~~a~~al~~l~~ 582 (587)
..-...+...+.+.. ...|.+..+++.-||+.+..
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 122334555555533 45688999999999998874
No 148
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=70.76 E-value=21 Score=27.47 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=51.3
Q ss_pred HhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhh
Q 007842 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (587)
..++|.+...++|.||-+...++..|..+. +.++|.+...+++++..-+...+..+. ..+..+ ....
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~ywil~~lv---~~~~~~-~~~~ 96 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYWVIKLMI---PYLIYP-NKQL 96 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHHHHHHHG---GGCCHH-HHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHHHHHHHH---HcCCHH-HHHH
Confidence 556788888889999988888887776542 356777777777777766665554433 222222 2345
Q ss_pred HHHHHHHHhcCC
Q 007842 398 LLPAIVELAEDR 409 (587)
Q Consensus 398 ~l~~l~~~~~~~ 409 (587)
+.|.+..++..+
T Consensus 97 l~~eL~rl~~~p 108 (134)
T 3ut4_A 97 VKSELERLSSLE 108 (134)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC
Confidence 666666666553
No 149
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=70.10 E-value=40 Score=29.35 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=72.2
Q ss_pred HHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc-ccChH-
Q 007842 437 LGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSE- 509 (587)
Q Consensus 437 l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~-~~~~~- 509 (587)
+.|++....++ +..-+|.+++.++|.+++.-..+. ...+++|.+...++.++.--+..|...+.++.. ..|-.
T Consensus 102 LyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~Y 181 (268)
T 2fv2_A 102 LYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAY 181 (268)
T ss_dssp THHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred hhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHH
Confidence 44544332222 335689999999999887655442 246789999998888888888999988888763 22221
Q ss_pred ------HH--HhhHH-HHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 510 ------IT--CSRLL-PVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 510 ------~~--~~~il-~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
.+ ...++ ..+..+.+++++.+-..++++...++.+.
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 11 12233 34444567788888888888888887653
No 150
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=68.98 E-value=68 Score=29.14 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhhC-hhhhHHHHHHHHH-HhcCC---CchHHHH-HHHHHHHHHHHHhChHH------HhhhhHHHH
Q 007842 413 VRLAIIEYIPLLASQLG-VGFFDDKLGALCM-QWLQD---KVYSIRD-AAANNLKRLAEEFGPEW------AMQHITPQV 480 (587)
Q Consensus 413 vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~-~~l~d---~~~~vr~-~a~~~l~~l~~~~~~~~------~~~~l~~~l 480 (587)
+|...++.+........ .+...+.++|.++ ..+.| ..+..|. ..+.++..++..++... +.+.++..-
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~T 124 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECT 124 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44555555555553321 2222333444443 33333 3333343 23445555555555321 223334344
Q ss_pred HhhccC---CchhHHHHHHHHHHHhhcccChH------HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch----
Q 007842 481 LEMINN---PHYLYRMTILRAISLLAPVMGSE------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---- 547 (587)
Q Consensus 481 ~~~l~d---~~~~~R~~a~~~l~~l~~~~~~~------~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---- 547 (587)
++|+++ ..+..|..-...+..+...+=.. ...+.++..+.-..+++.++|-..++..+..+...+..
T Consensus 125 L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~ 204 (321)
T 1w9c_A 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAA 204 (321)
T ss_dssp HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHH
Confidence 455553 46899999999999887643221 12355667777779999999999999999988877642
Q ss_pred --HHHHhhHHHHHHH---hcCCCCc
Q 007842 548 --SMVEKTIRPCLVE---LTEDPDV 567 (587)
Q Consensus 548 --~~~~~~i~~~l~~---l~~d~d~ 567 (587)
+.+....++.+.. .++|++.
T Consensus 205 ~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 205 AQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchh
Confidence 1344445555555 3566654
No 151
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=68.49 E-value=23 Score=28.15 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=52.9
Q ss_pred hhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHH----HhhHHHH-HHhhcCCC---ChhHHHHHHHHHHHhhhh
Q 007842 474 QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASKDR---VPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 474 ~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~d~---~~~vR~~~~~~l~~l~~~ 544 (587)
...+..+..-++ .++..+...|+..+..+.+++|..+. ...++.. +.++++++ ...||..++..+..+...
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 344555655555 35777777899999999999998653 2345553 56666543 347999999999999887
Q ss_pred hchH
Q 007842 545 VDQS 548 (587)
Q Consensus 545 ~~~~ 548 (587)
++.+
T Consensus 132 F~~~ 135 (152)
T 3rru_A 132 FPGG 135 (152)
T ss_dssp CSSS
T ss_pred hCCC
Confidence 7553
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=67.89 E-value=88 Score=30.03 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=13.7
Q ss_pred HhHHHHHhccCCcHHHHHHHHHHHHcc
Q 007842 320 ILPCVKELSSDSSQHVRSALASVIMGM 346 (587)
Q Consensus 320 i~~~l~~~~~d~~~~vr~~a~~~l~~l 346 (587)
++-.+..+++.++++-|...-..+..+
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrI 189 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRI 189 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 444444555555555555555554444
No 153
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.61 E-value=39 Score=26.33 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=43.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007842 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (587)
Q Consensus 402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
+.+...+.+|..-...+.-|..+...... .+...+++.+...|+++.+.++..|+..|..++..
T Consensus 16 V~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 16 IDAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 34455666665544454544444333221 23467889999999999999999999999998864
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.33 E-value=58 Score=27.75 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=36.0
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHH----hhHHHHHHhhcCC-CChhHHHHHHHHHHHhh
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC----SRLLPVVINASKD-RVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~ 542 (587)
...+..+.+-++++|+.+...|+..+..+.++.|..+.. ..++..+.+++++ ++..||..++..+..+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344444555555566666666666666666666654431 2345555554432 34455555555555444
No 155
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=67.13 E-value=74 Score=29.16 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=2.8
Q ss_pred HhhcCCC
Q 007842 520 INASKDR 526 (587)
Q Consensus 520 ~~~l~d~ 526 (587)
..+..|+
T Consensus 276 ~~L~~d~ 282 (333)
T 3bwt_A 276 QSLLNDS 282 (333)
T ss_dssp HHHHTST
T ss_pred HHHHcCC
Confidence 3344443
No 156
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=64.31 E-value=91 Score=28.87 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=22.0
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhc
Q 007842 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT 562 (587)
Q Consensus 513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~ 562 (587)
++++..++... ++..|...+..+......+....+...++..+.++.
T Consensus 297 nyViq~~L~~~---~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 297 NYVVQKMIDMA---EPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp HHHHHHHHHHC---CHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 44444444442 344455555555444443333344455555555543
No 157
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=60.60 E-value=1.7e+02 Score=30.76 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=59.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhHhHHHHHhccC---CcHHHHHHHHHHHHccccccch-hH
Q 007842 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSD---SSQHVRSALASVIMGMAPLLGK-DA 354 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~-~~ 354 (587)
+.|.+...+.+.+..+...+..++..++-.-+ ++.+.+.++..+...+.. .++.--.++++++..++..+-. ..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~ 419 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKL 419 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTT
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcc
Confidence 56666667778888888888888888876433 155556666666555555 3444455666777766644321 12
Q ss_pred HHHhHHHHHHHhh---cCCChHHHHHHHHhhhhhh
Q 007842 355 TIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 355 ~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~ 386 (587)
+..++.|.+..++ .-+++.=-..+++.+..+.
T Consensus 420 yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 420 YRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp GGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 3334444444333 3333333334444444443
No 158
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=58.51 E-value=1.4e+02 Score=28.96 Aligned_cols=144 Identities=10% Similarity=0.110 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhcCC------ChHHHHHHHHHHHHHHHhhChhhhHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007842 396 QSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLGVGFFDDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (587)
Q Consensus 396 ~~~l~~l~~~~~~~------~~~vR~~~~~~l~~l~~~~~~~~~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 468 (587)
+.++|.+.+++.++ +|.. .++.+..+......+...+.+ +..+...+...+..+...+++.+. +...
T Consensus 72 ~~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~p 145 (500)
T 3vld_A 72 KPLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQP 145 (500)
T ss_dssp HHHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSS
T ss_pred HHHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCc
Confidence 57888888877332 3333 778888887776654433321 344667778888888888888776 3334
Q ss_pred hHHHh-hhhHHHHHhhccCCchh---HHHHHHHHHHHhhcc-cChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842 469 PEWAM-QHITPQVLEMINNPHYL---YRMTILRAISLLAPV-MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 469 ~~~~~-~~l~~~l~~~l~d~~~~---~R~~a~~~l~~l~~~-~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 543 (587)
.+.+. ..++..+++.+.|++.. +-.+.=.+++.+... +-........+|.+...-++.++.+-...+..+..+.+
T Consensus 146 k~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 146 KGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp GGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred hhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHhc
Confidence 44443 56788888888777544 333333344444211 00012234456777666665666666666776666655
Q ss_pred hh
Q 007842 544 IV 545 (587)
Q Consensus 544 ~~ 545 (587)
..
T Consensus 226 ~i 227 (500)
T 3vld_A 226 FI 227 (500)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 159
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=54.76 E-value=1.6e+02 Score=28.55 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=14.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842 439 ALCMQWLQDKVYSIRDAAANNLKRLA 464 (587)
Q Consensus 439 ~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
..++.++.+++++||..|+.+++.+.
T Consensus 450 ~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 450 ADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33455555555556655555555544
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=52.17 E-value=88 Score=24.90 Aligned_cols=74 Identities=12% Similarity=0.003 Sum_probs=46.7
Q ss_pred HHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcChhhh----hhchHHH-HHHhcc---CCcHHHHHHHHHHHHHHHHHh
Q 007842 202 DIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPV-IVNFSQ---DKSWRVRYMVANQLYELCEAV 272 (587)
Q Consensus 202 ~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~-l~~~~~---d~~~~vR~~a~~~l~~~~~~~ 272 (587)
.....+..-++ ..++.+...|+..+..+...+++... ...++.- +.+.+. ++...||..+.+.+......+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 34444555554 46777888888888888888876321 2223333 344432 345688888888888888777
Q ss_pred CCC
Q 007842 273 GPE 275 (587)
Q Consensus 273 ~~~ 275 (587)
+..
T Consensus 133 ~~~ 135 (157)
T 1elk_A 133 RSS 135 (157)
T ss_dssp TTC
T ss_pred CCC
Confidence 643
No 161
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=51.93 E-value=38 Score=29.33 Aligned_cols=71 Identities=13% Similarity=-0.033 Sum_probs=47.8
Q ss_pred hhhHHHHHhhccCCchhHHHHHHH----HHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 474 QHITPQVLEMINNPHYLYRMTILR----AISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~----~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
+...+.+.....+++..+|..++. .+..+......+.....++..+...+.|+..-||.+...+|..++..
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 455666677777887777777776 44442211112345677777777788888888888888888877765
No 162
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=51.76 E-value=44 Score=28.92 Aligned_cols=70 Identities=7% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHH----hHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842 164 LRSIYTQLCQDDMPMVRRSAAS----NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (587)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~~~~----~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
..+.+...+.|++..+|+.+.. .+..+.....++...+.++..+...+.|+.+.|+.+....|..++...
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 4556777888888888888877 444421111123456777888888888888999998888888777653
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.75 E-value=1.1e+02 Score=25.96 Aligned_cols=74 Identities=7% Similarity=-0.022 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh----hhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCC
Q 007842 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 275 (587)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~ 275 (587)
..+..+..-++..++.+...|+..|..+...+++.. ....++..+..+.. ..+..||..+.+.+...+..++..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 344455555666777888888888888777765421 11223333333332 456788888888888888776643
No 164
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=47.43 E-value=18 Score=33.53 Aligned_cols=98 Identities=8% Similarity=0.069 Sum_probs=57.0
Q ss_pred cCCchhHHHHHHHHHHHhhcccC--hHHH-----HhhHHHHHHhhc----CCCChhHHHHHHHHHHHhhhhhchH----H
Q 007842 485 NNPHYLYRMTILRAISLLAPVMG--SEIT-----CSRLLPVVINAS----KDRVPNIKFNVAKVLQSLIPIVDQS----M 549 (587)
Q Consensus 485 ~d~~~~~R~~a~~~l~~l~~~~~--~~~~-----~~~il~~l~~~l----~d~~~~vR~~~~~~l~~l~~~~~~~----~ 549 (587)
.+..+..++.+++++.++...-. ...+ ...++..+...+ ..++.++|.+++..+-+++-..-.. .
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~e 288 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 288 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTT
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHH
Confidence 35567888888888888875332 2222 122333332222 1236788988888888876543221 1
Q ss_pred HHhhHHHHHHHhc--C---CCCccHHHHHHHHHHHHHH
Q 007842 550 VEKTIRPCLVELT--E---DPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 550 ~~~~i~~~l~~l~--~---d~d~~Vr~~a~~al~~l~~ 582 (587)
....+..++.... . ..|.+..+++.-|||.+..
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1223333333211 1 2488899999999999874
No 165
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=46.90 E-value=92 Score=29.09 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHhcCCCc
Q 007842 430 VGFFDDKLGALCMQWLQDKV 449 (587)
Q Consensus 430 ~~~~~~~l~~~l~~~l~d~~ 449 (587)
.+.+..+++..++..-.+..
T Consensus 218 ~d~~GnyViQ~~l~~~~~~~ 237 (369)
T 3k49_A 218 QDQYGNYVIQYVLQQDQFTN 237 (369)
T ss_dssp HSTTHHHHHHHHHTCCTTSC
T ss_pred cCCcHHHHHHHHHhcCCchh
Confidence 33445555555555444433
No 166
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=45.77 E-value=1.1e+02 Score=24.00 Aligned_cols=71 Identities=8% Similarity=0.019 Sum_probs=49.2
Q ss_pred hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 544 (587)
+.+...+.+.+....+..+..++..+..+.+..|.++ +...+.+.+.......++.+|....+.+..+-..
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 4455555555555667788888888888888877653 3444555555555556788999998888887644
No 167
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=44.12 E-value=1.9e+02 Score=26.32 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHHHHhh-------ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007842 408 DRHWRVRLAIIEYIPLLASQL-------GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (587)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~-------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 468 (587)
++.|..|....+.+..+.... +++.+ ..++..+...++.+..+|-..++..+..+...+.
T Consensus 133 ~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 133 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 368999999999999988653 33333 3467788899999999999999999988887663
No 168
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=42.93 E-value=2.2e+02 Score=26.76 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhchHHHHhhHHHHHH---HhcCCCCccHHHHHH
Q 007842 531 KFNVAKVLQSLIPIVDQSMVEKTIRPCLV---ELTEDPDVDVRFFAT 574 (587)
Q Consensus 531 R~~~~~~l~~l~~~~~~~~~~~~i~~~l~---~l~~d~d~~Vr~~a~ 574 (587)
....+.-+..+...+++..+.....|.+. ++.+.+...|-.+|.
T Consensus 313 evlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL 359 (392)
T 2jak_A 313 EVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL 359 (392)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34555566666666666655544444433 345555555555544
No 169
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=40.53 E-value=64 Score=28.24 Aligned_cols=97 Identities=9% Similarity=0.099 Sum_probs=57.4
Q ss_pred CCchhHHHHHHHHHHHhhccc--ChHHH-----HhhHHHHHHhhcCC----CChhHHHHHHHHHHHhhhhhchH----HH
Q 007842 486 NPHYLYRMTILRAISLLAPVM--GSEIT-----CSRLLPVVINASKD----RVPNIKFNVAKVLQSLIPIVDQS----MV 550 (587)
Q Consensus 486 d~~~~~R~~a~~~l~~l~~~~--~~~~~-----~~~il~~l~~~l~d----~~~~vR~~~~~~l~~l~~~~~~~----~~ 550 (587)
++++..++.+++++.++...- |...+ ...++..+...+.| ++.++|.+++..+-+++-..... ..
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 456678888888888886543 22222 22233333332333 37789999988888876543221 12
Q ss_pred HhhHHHHHHHhcC-----CCCccHHHHHHHHHHHHHH
Q 007842 551 EKTIRPCLVELTE-----DPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 551 ~~~i~~~l~~l~~-----d~d~~Vr~~a~~al~~l~~ 582 (587)
...+...+.+... ..|.+..+++.-|+|.+..
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 2334444443211 2377899999999998874
No 170
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=39.11 E-value=2.5e+02 Score=26.44 Aligned_cols=208 Identities=10% Similarity=0.083 Sum_probs=99.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhC------CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-HHH-HHhHhH
Q 007842 251 QDKSWRVRYMVANQLYELCEAVG------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-ELA-IQHILP 322 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~~~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~-~~~i~~ 322 (587)
.|++|.--..+.+.+..+...-. +......++--++.++.++|+.-|......+..+-..+.. ..+ ...+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46788888888888887766421 1222334677788899999999999888888776554322 211 111222
Q ss_pred HHHHhccCCc-HHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCCh-HHHHHHHHhhhhhhhhhchhhHHhh
Q 007842 323 CVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 323 ~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (587)
.+.+.+-... ..=-....+.++.+...+. ++.....+...+..+.+...- .-......++..+.+.- ..+...
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD--p~L~~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC--chhHHH
Confidence 2222221111 0001122333333322221 122222233333333333221 11122222332222110 011122
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHH---HHHhcCCCchHHHHHHHHHH
Q 007842 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNL 460 (587)
Q Consensus 398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l 460 (587)
++..+...---.+..-....+.-++.+...++++.|.....|+ +-..+.+++..|-+.|+..+
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 2333332222234444445666677777777777665544444 34456778888888777655
No 171
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=38.93 E-value=28 Score=26.32 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=37.6
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842 518 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 518 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~ 582 (587)
.|..+++++++.||..++...-.+.+ ....+.|..+...+.....+.|..+|..+.+
T Consensus 61 aLl~Ll~H~n~~VRl~AA~~~L~~~p--------~~A~~vLe~ia~~~~~~~~f~A~m~L~~we~ 117 (123)
T 2i9c_A 61 ALLSLFEYPNMQVRLQAAKLTLAVAP--------VKAREQLEAIVSSKWFPQAGDAGMCLDLLDD 117 (123)
T ss_dssp GGGGGGGSSCHHHHHHHHHTTTTTCH--------HHHHHHHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHhhCh--------HHHHHHHHHHHhCCCCCccccHHHHHHHHHc
Confidence 36677888888888887755444332 2455666666555556677778888777654
No 172
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=36.10 E-value=1.7e+02 Score=27.74 Aligned_cols=98 Identities=8% Similarity=0.085 Sum_probs=56.4
Q ss_pred cCCchhHHHHHHHHHHHhhcccC--hHHHH-hhHHHHHHhhc--------CCCChhHHHHHHHHHHHhhhhhchH----H
Q 007842 485 NNPHYLYRMTILRAISLLAPVMG--SEITC-SRLLPVVINAS--------KDRVPNIKFNVAKVLQSLIPIVDQS----M 549 (587)
Q Consensus 485 ~d~~~~~R~~a~~~l~~l~~~~~--~~~~~-~~il~~l~~~l--------~d~~~~vR~~~~~~l~~l~~~~~~~----~ 549 (587)
.+..+..++.+++++.++...-. ...+. ..+...+...+ ...+.++|.+++..+-+++-..-.. .
T Consensus 272 ~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~e 351 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 351 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTT
T ss_pred CCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHH
Confidence 34567788888888888865322 22221 11223333322 1236789999888888876543221 1
Q ss_pred HHhhHHHHHHHhcC-----CCCccHHHHHHHHHHHHHH
Q 007842 550 VEKTIRPCLVELTE-----DPDVDVRFFATQAIQSIDH 582 (587)
Q Consensus 550 ~~~~i~~~l~~l~~-----d~d~~Vr~~a~~al~~l~~ 582 (587)
....+..++..... ..|.+..+++.-|||.+..
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 22233344432111 2488999999999999874
No 173
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=36.01 E-value=1.4e+02 Score=22.67 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---HHHhh---H
Q 007842 442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSR---L 515 (587)
Q Consensus 442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---~~~~~---i 515 (587)
+.-++.....++..+.-++... . ..+.++..+.+.+.......|...+..+..+.+..+.. .+... +
T Consensus 14 L~~L~~s~~sI~~~s~w~l~h~-----~--~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~ 86 (132)
T 4flb_A 14 FQSVTNTMESIQGLSSWCIENK-----K--HHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADV 86 (132)
T ss_dssp HHHCCSSHHHHHHHHHHHHHTG-----G--GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTT
T ss_pred HHHCcccHHHHHHHHHHHHHhH-----H--HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 3445555555554443333221 1 23445556655566666778888888888888765331 23333 3
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842 516 LPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 516 l~~l~~~l~d~~~~vR~~~~~~l~~l~ 542 (587)
+|.+..... ++..|....+.+..+-
T Consensus 87 l~~~~~~~~--~~~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 87 LPEAAALVK--DPSVSKSVERIFKIWE 111 (132)
T ss_dssp HHHHHHTTC--STTTHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CHHHHHHHHHHHHHhc
Confidence 333333333 4566777766666554
No 174
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=34.44 E-value=3.3e+02 Score=26.37 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=13.4
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842 555 RPCLVELTEDPDVDVRFFATQAIQSID 581 (587)
Q Consensus 555 ~~~l~~l~~d~d~~Vr~~a~~al~~l~ 581 (587)
...+.+|++++|++||..|..|++++.
T Consensus 449 K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 449 KADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344444455555555555555555443
No 175
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=29.80 E-value=3.4e+02 Score=25.12 Aligned_cols=14 Identities=36% Similarity=0.273 Sum_probs=7.2
Q ss_pred HhHhHHHHHhccCC
Q 007842 318 QHILPCVKELSSDS 331 (587)
Q Consensus 318 ~~i~~~l~~~~~d~ 331 (587)
.++.+.+..+..|.
T Consensus 63 ~el~~~~~~L~~d~ 76 (369)
T 3k49_A 63 NEIRDDAIELSNDV 76 (369)
T ss_dssp HHHGGGHHHHHHST
T ss_pred HHHHHHHHHHhhCc
Confidence 44455555555554
No 176
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=25.92 E-value=2.3e+02 Score=22.00 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=39.2
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007842 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (587)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~ 425 (587)
..++..+.+.+....++-+..++..+..+++..|.+ .+...+.+.+.......+..+|..+.+.+...-
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 445555555555566777777777777777666543 222334444444444455566666655555554
No 177
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=25.48 E-value=4.2e+02 Score=24.82 Aligned_cols=175 Identities=11% Similarity=0.056 Sum_probs=89.4
Q ss_pred HHHhhhhcchhhHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCC----ChHHH
Q 007842 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSA----PDILK 161 (587)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~----~~~~~ 161 (587)
--|..+..++|+.-|+.....+..+...+.. ..+.+.+...+.++..+. ....-...+.+++.+..+. .++++
T Consensus 177 ~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk 256 (392)
T 2jak_A 177 LQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHK 256 (392)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHH
Confidence 3344566789999999988888877654432 224444555555555443 3444445666666655544 45666
Q ss_pred HHHHHHHHHhcCCCChH-HHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhh
Q 007842 162 TELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (587)
Q Consensus 162 ~~l~~~l~~l~~d~~~~-vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (587)
..+...+..+...+... --.....++..+.+. ++.....++..+.+.=--.+..-....+.-+..+.+.++++....
T Consensus 257 ~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~ 334 (392)
T 2jak_A 257 IFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 334 (392)
T ss_dssp HHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 66777777776654322 122333444444433 122222222222111111111112234555666666666654443
Q ss_pred c---hHHHHHHhccCCcHHHHHHHHHHH
Q 007842 241 H---ILPVIVNFSQDKSWRVRYMVANQL 265 (587)
Q Consensus 241 ~---l~~~l~~~~~d~~~~vR~~a~~~l 265 (587)
. ++..+.++++.++.+|-..|...+
T Consensus 335 i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 335 IMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 3 344455566677777766665433
No 178
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.63 E-value=2.6e+02 Score=22.04 Aligned_cols=73 Identities=5% Similarity=-0.019 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhccch----hhhHHHH-HHHHhhhCC---chhHHHHHHHHHHHHhhh
Q 007842 162 TELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH----LKTDIMS-IFEDLTQDD---QDSVRLLAVEGCAALGKL 232 (587)
Q Consensus 162 ~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~-~l~~l~~d~---~~~vr~~a~~~l~~l~~~ 232 (587)
++.+..|..-+. .+++.+...++..|..++++.|... ....++. .+..++++. ...||...++.+..-+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 334444444333 3566666667777777777766421 1122332 233333332 124666666666655555
Q ss_pred cC
Q 007842 233 LE 234 (587)
Q Consensus 233 ~~ 234 (587)
++
T Consensus 132 F~ 133 (152)
T 3rru_A 132 FP 133 (152)
T ss_dssp CS
T ss_pred hC
Confidence 44
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=24.18 E-value=4.4e+02 Score=24.59 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHhhccc-ChHHH--HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842 488 HYLYRMTILRAISLLAPVM-GSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 488 ~~~~R~~a~~~l~~l~~~~-~~~~~--~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 545 (587)
+......++.|+..+...- |-+.+ .+..+..+...+..+.+.+|..+++.|..++..-
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 4467778888888887632 33322 2456778888888899999999999998887654
No 180
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=23.22 E-value=1.3e+02 Score=23.01 Aligned_cols=125 Identities=11% Similarity=0.000 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----
Q 007842 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---- 508 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---- 508 (587)
|.+..+.-.+.-|+.....+...+.-++...- ..+.+...+.+.+.......|...+..+..+.+....
T Consensus 4 f~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~-------~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~ 76 (135)
T 4fu3_A 4 FSESALEKKLSELSNSQQSVQTLSLWLIHHRK-------HAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPE 76 (135)
T ss_dssp CCHHHHHHHHHHCCSSTTHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSH
T ss_pred CCHHHHHHHHHHccccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHH
Q ss_pred --HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCc
Q 007842 509 --EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 567 (587)
Q Consensus 509 --~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~ 567 (587)
..+.+.+.+.+.......++..|....+.+..+-.. ..|...++..|...+.+..+
T Consensus 77 y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r---~vf~~~~i~~L~~~l~~~~~ 134 (135)
T 4fu3_A 77 FTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQER---SVYGGEFIQQLKLSMEDSKS 134 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHT---TSSCHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CCcCHHHHHHHHHHHhCCCC
No 181
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.61 E-value=2.5e+02 Score=21.22 Aligned_cols=95 Identities=9% Similarity=0.003 Sum_probs=56.4
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhh
Q 007842 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKT 553 (587)
Q Consensus 477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~ 553 (587)
+...++-++.....+...+..++.+.-. .+.+...+.+.+....++-|...+..+-.++..... ..+...
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~~~-------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~ 82 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENKKH-------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRES 82 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTGGG-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 3444445666667777777777776432 355666666667777888899999888888766432 234444
Q ss_pred HHHHHHHhc-CCCCccHHHHHHHHHH
Q 007842 554 IRPCLVELT-EDPDVDVRFFATQAIQ 578 (587)
Q Consensus 554 i~~~l~~l~-~d~d~~Vr~~a~~al~ 578 (587)
+.+.+.... .-.+++.|....+.+.
T Consensus 83 f~~~l~~~~~~~~~~~~~~kl~~ll~ 108 (132)
T 4flb_A 83 FADVLPEAAALVKDPSVSKSVERIFK 108 (132)
T ss_dssp HHTTHHHHHHTTCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444422 1124555655555544
No 182
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.30 E-value=6.9e+02 Score=26.18 Aligned_cols=114 Identities=10% Similarity=0.036 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhC---CchhHHHHHHHHHHHHhhhcC
Q 007842 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD---DQDSVRLLAVEGCAALGKLLE 234 (587)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~ 234 (587)
..+.+.|.+...+.+.+..+...+..++..++..-+. +.+.+.++.-+-..+.. .++.-..++++++..++..+-
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 4466777777888999999999999999998875431 34444444443333333 344444567778877776554
Q ss_pred h-hhhhhchHHHHH---HhccCCcHHHHHHHHHHHHHHHHHhC
Q 007842 235 P-QDCVAHILPVIV---NFSQDKSWRVRYMVANQLYELCEAVG 273 (587)
Q Consensus 235 ~-~~~~~~l~~~l~---~~~~d~~~~vR~~a~~~l~~~~~~~~ 273 (587)
. ..+..++.+++. ..++-.++.--..+.+.+..++..++
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 3 234455555554 44555566666778888888888665
No 183
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.59 E-value=4.7e+02 Score=23.92 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=3.9
Q ss_pred hHHHHHHHHh
Q 007842 372 PDVRLNIISK 381 (587)
Q Consensus 372 ~~vr~~a~~~ 381 (587)
+..|...+..
T Consensus 230 ~~~~~~i~~~ 239 (351)
T 3gvo_A 230 PEDKSKIVSE 239 (351)
T ss_dssp HHHHHHHHHT
T ss_pred hhhHHHHHHH
Confidence 3344433333
Done!