Query 007844
Match_columns 587
No_of_seqs 252 out of 1980
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:54:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 3.1E-25 1.1E-29 211.6 12.3 161 22-202 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 2.7E-24 9.2E-29 202.2 15.5 154 24-201 2-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 2.7E-24 9.1E-29 201.6 13.5 155 23-200 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 3.4E-24 1.2E-28 203.7 12.6 159 23-198 1-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 4.9E-24 1.7E-28 200.4 10.2 154 25-200 2-160 (164)
6 3krm_A Insulin-like growth fac 99.9 3.3E-23 1.1E-27 194.8 14.9 154 274-441 3-157 (163)
7 2anr_A Neuro-oncological ventr 99.9 1.4E-23 4.7E-28 200.2 12.0 162 271-441 3-176 (178)
8 2jzx_A Poly(RC)-binding protei 99.9 2.2E-23 7.6E-28 195.3 12.4 156 272-440 3-159 (160)
9 1j4w_A FUSE binding protein; s 99.9 1.1E-22 3.8E-27 193.2 12.8 157 274-438 3-174 (174)
10 2jvz_A KH type-splicing, FAR u 99.9 2.2E-22 7.5E-27 189.1 13.8 156 274-441 2-161 (164)
11 3n89_A Defective in GERM LINE 99.9 6.1E-22 2.1E-26 206.4 17.5 225 126-439 27-260 (376)
12 3n89_A Defective in GERM LINE 99.8 1.4E-19 4.8E-24 188.6 15.8 297 17-436 22-337 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 2.7E-17 9.3E-22 151.0 10.1 137 273-440 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 5.1E-17 1.7E-21 149.3 9.7 136 24-200 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 7.9E-15 2.7E-19 143.2 10.4 147 25-201 34-192 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.5 2.7E-14 9.1E-19 139.5 9.8 146 275-440 35-191 (219)
17 2axy_A Poly(RC)-binding protei 99.5 5.1E-14 1.8E-18 114.0 6.2 71 363-440 2-72 (73)
18 1zzk_A Heterogeneous nuclear r 99.5 1.4E-13 4.8E-18 114.0 8.3 74 363-441 4-77 (82)
19 2axy_A Poly(RC)-binding protei 99.4 8.4E-14 2.9E-18 112.7 6.6 70 127-200 3-72 (73)
20 1dtj_A RNA-binding neurooncolo 99.4 1.1E-13 3.9E-18 112.8 7.3 74 365-440 2-75 (76)
21 2p2r_A Poly(RC)-binding protei 99.4 7.6E-14 2.6E-18 113.9 6.2 72 364-440 3-74 (76)
22 1wvn_A Poly(RC)-binding protei 99.4 1.3E-13 4.4E-18 114.2 6.7 73 364-441 4-76 (82)
23 2dgr_A Ring finger and KH doma 99.4 1.4E-13 4.8E-18 114.0 5.7 70 363-440 7-76 (83)
24 2p2r_A Poly(RC)-binding protei 99.4 2.3E-13 7.8E-18 111.0 6.7 71 128-200 4-74 (76)
25 1zzk_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 111.1 8.4 72 127-200 5-76 (82)
26 1wvn_A Poly(RC)-binding protei 99.4 3.2E-13 1.1E-17 111.8 7.5 73 127-201 4-76 (82)
27 1dtj_A RNA-binding neurooncolo 99.4 3.3E-13 1.1E-17 110.0 7.3 73 128-200 2-75 (76)
28 1x4n_A FAR upstream element bi 99.4 5.1E-13 1.7E-17 113.1 8.6 74 363-441 12-85 (92)
29 1ec6_A RNA-binding protein NOV 99.4 3.1E-13 1.1E-17 113.2 6.3 74 366-441 3-76 (87)
30 1j5k_A Heterogeneous nuclear r 99.4 2.9E-13 1E-17 113.8 5.8 74 363-441 11-84 (89)
31 1j5k_A Heterogeneous nuclear r 99.4 6E-13 2E-17 111.9 6.6 73 126-200 11-83 (89)
32 2hh2_A KH-type splicing regula 99.4 1E-12 3.5E-17 114.3 7.8 74 367-442 8-81 (107)
33 1tua_A Hypothetical protein AP 99.4 1.5E-12 5E-17 124.2 9.3 145 26-200 5-160 (191)
34 2opv_A KHSRP protein; KH domai 99.4 1.7E-12 5.7E-17 108.3 8.6 74 364-440 12-85 (85)
35 1x4m_A FAR upstream element bi 99.3 1.6E-12 5.4E-17 110.5 8.0 76 363-441 12-87 (94)
36 1ec6_A RNA-binding protein NOV 99.3 8.6E-13 2.9E-17 110.5 6.1 74 128-201 2-76 (87)
37 2hh3_A KH-type splicing regula 99.3 1.5E-12 5E-17 112.9 7.1 73 365-442 10-82 (106)
38 2opv_A KHSRP protein; KH domai 99.3 2.7E-12 9.4E-17 106.9 8.3 75 126-200 11-85 (85)
39 1x4n_A FAR upstream element bi 99.3 1.6E-12 5.6E-17 109.9 6.9 74 126-201 12-85 (92)
40 2hh2_A KH-type splicing regula 99.3 1.5E-12 5.2E-17 113.2 6.6 72 130-201 8-80 (107)
41 1x4m_A FAR upstream element bi 99.3 2.1E-12 7.1E-17 109.7 6.3 77 125-201 11-87 (94)
42 2ctm_A Vigilin; K homology typ 99.3 3.9E-12 1.3E-16 108.2 7.9 76 363-444 14-89 (95)
43 1we8_A Tudor and KH domain con 99.3 3.1E-12 1.1E-16 110.7 7.3 77 363-442 12-88 (104)
44 1tua_A Hypothetical protein AP 99.3 4.4E-12 1.5E-16 120.8 8.8 145 276-440 6-160 (191)
45 2ctl_A Vigilin; K homology typ 99.3 6.5E-12 2.2E-16 107.2 8.5 73 364-440 15-87 (97)
46 1vig_A Vigilin; RNA-binding pr 99.3 4.1E-12 1.4E-16 102.1 6.2 67 364-437 3-69 (71)
47 2dgr_A Ring finger and KH doma 99.3 3.5E-12 1.2E-16 105.6 5.1 70 126-200 7-76 (83)
48 2hh3_A KH-type splicing regula 99.3 4.9E-12 1.7E-16 109.6 6.2 72 128-201 10-81 (106)
49 2cte_A Vigilin; K homology typ 99.3 6.5E-12 2.2E-16 106.6 6.6 72 363-441 14-85 (94)
50 1we8_A Tudor and KH domain con 99.2 8.5E-12 2.9E-16 108.0 7.3 75 127-201 13-87 (104)
51 2ctk_A Vigilin; K homology typ 99.2 2.8E-11 9.5E-16 104.6 6.6 72 364-442 15-86 (104)
52 2ctl_A Vigilin; K homology typ 99.1 5.6E-11 1.9E-15 101.4 7.2 72 128-200 16-87 (97)
53 1vig_A Vigilin; RNA-binding pr 99.1 3.8E-11 1.3E-15 96.4 5.7 67 128-198 4-70 (71)
54 2cte_A Vigilin; K homology typ 99.1 4.2E-11 1.4E-15 101.6 5.9 72 126-201 14-85 (94)
55 2ctm_A Vigilin; K homology typ 99.1 9.7E-11 3.3E-15 99.5 6.7 73 126-201 14-86 (95)
56 2ctj_A Vigilin; K homology typ 99.1 1.3E-10 4.6E-15 98.5 6.4 72 363-441 14-86 (95)
57 2ctk_A Vigilin; K homology typ 99.0 3.4E-10 1.2E-14 97.7 6.3 69 128-200 16-84 (104)
58 2ctf_A Vigilin; K homology typ 99.0 5.5E-10 1.9E-14 96.0 7.5 68 364-441 25-93 (102)
59 2ctf_A Vigilin; K homology typ 99.0 6.1E-10 2.1E-14 95.7 6.9 67 128-201 26-93 (102)
60 2ctj_A Vigilin; K homology typ 98.9 1.9E-09 6.5E-14 91.4 6.0 72 125-200 13-85 (95)
61 2cpq_A FragIle X mental retard 98.7 4E-09 1.4E-13 88.0 3.1 73 363-445 12-86 (91)
62 2cpq_A FragIle X mental retard 98.5 7.5E-08 2.6E-12 80.3 4.7 67 126-199 12-80 (91)
63 1k1g_A SF1-BO isoform; splicin 98.4 3.7E-07 1.3E-11 81.7 7.9 79 364-442 5-101 (131)
64 1k1g_A SF1-BO isoform; splicin 98.4 6.9E-07 2.4E-11 80.0 7.3 73 128-200 6-99 (131)
65 2yqr_A KIAA0907 protein; struc 98.3 2.8E-06 9.7E-11 74.6 9.3 77 364-440 10-99 (119)
66 2yqr_A KIAA0907 protein; struc 98.2 1.6E-06 5.6E-11 76.1 6.8 73 128-200 11-99 (119)
67 2bl5_A MGC83862 protein, quaki 97.9 8.8E-06 3E-10 73.3 5.3 74 366-439 2-100 (140)
68 2bl5_A MGC83862 protein, quaki 97.9 8.1E-06 2.8E-10 73.5 4.4 72 129-200 2-101 (140)
69 3u1k_A Polyribonucleotide nucl 97.7 4.2E-05 1.4E-09 85.4 7.1 92 99-198 537-629 (630)
70 3u1k_A Polyribonucleotide nucl 97.6 5.3E-05 1.8E-09 84.6 6.7 65 363-438 564-629 (630)
71 3v69_A Protein filia; RNA-bind 97.6 0.00013 4.5E-09 64.5 7.4 67 367-439 57-123 (140)
72 2cxc_A NUSA; transcription ter 97.5 4E-05 1.4E-09 69.4 3.5 103 25-165 36-139 (144)
73 3v69_A Protein filia; RNA-bind 97.0 0.0011 3.7E-08 58.6 6.4 68 130-200 57-124 (140)
74 4aid_A Polyribonucleotide nucl 96.9 0.00047 1.6E-08 77.9 3.9 94 99-200 540-634 (726)
75 2cxc_A NUSA; transcription ter 96.9 0.00066 2.3E-08 61.4 4.0 103 274-403 36-140 (144)
76 4aid_A Polyribonucleotide nucl 96.9 0.0006 2E-08 77.0 4.5 97 335-444 541-638 (726)
77 2asb_A Transcription elongatio 95.9 0.004 1.4E-07 61.1 3.7 95 34-167 126-222 (251)
78 1k0r_A NUSA; two component arr 95.8 0.0051 1.7E-07 63.7 3.9 95 34-167 249-345 (366)
79 2asb_A Transcription elongatio 94.7 0.037 1.3E-06 54.3 5.8 96 283-406 126-224 (251)
80 1hh2_P NUSA, N utilization sub 94.2 0.031 1.1E-06 57.7 4.2 94 34-166 245-340 (344)
81 1k0r_A NUSA; two component arr 94.1 0.054 1.8E-06 56.1 5.9 96 283-406 249-347 (366)
82 3cdi_A Polynucleotide phosphor 93.6 0.022 7.4E-07 64.6 2.0 93 99-199 530-623 (723)
83 1e3p_A Guanosine pentaphosphat 92.6 0.018 6E-07 65.6 -0.7 91 99-198 569-660 (757)
84 1e3p_A Guanosine pentaphosphat 91.6 0.025 8.6E-07 64.3 -1.1 64 364-438 596-660 (757)
85 3cdi_A Polynucleotide phosphor 91.3 0.063 2.2E-06 60.8 1.8 66 364-440 558-624 (723)
86 1hh2_P NUSA, N utilization sub 91.0 0.24 8.2E-06 51.0 5.7 94 283-404 245-341 (344)
87 1wh9_A 40S ribosomal protein S 64.0 2.9 9.8E-05 34.5 1.8 29 26-54 36-64 (92)
88 2pt7_G HP1451, hypothetical pr 62.0 3.8 0.00013 37.0 2.4 31 27-57 35-65 (152)
89 2pt7_G HP1451, hypothetical pr 53.5 4.6 0.00016 36.5 1.5 65 130-200 34-98 (152)
90 1wh9_A 40S ribosomal protein S 51.6 4.5 0.00016 33.3 1.0 28 130-157 36-63 (92)
91 3u5c_D RP13, YS3, 40S ribosoma 33.0 16 0.00056 35.3 1.8 29 27-55 46-74 (240)
92 3j20_C 30S ribosomal protein S 32.6 19 0.00064 34.2 2.1 28 27-54 42-69 (210)
93 4hhu_A OR280; engineered prote 31.7 2.4E+02 0.0081 23.9 13.0 28 414-441 122-149 (170)
94 2xzm_C KH domain containing pr 30.9 22 0.00076 34.5 2.3 30 26-55 48-77 (243)
95 3iz6_B 40S ribosomal protein S 29.1 17 0.00058 34.9 1.2 30 26-55 45-74 (227)
96 3gku_A Probable RNA-binding pr 25.8 20 0.00069 34.4 1.0 32 28-59 95-126 (225)
97 3r8n_C 30S ribosomal protein S 25.3 19 0.00064 34.1 0.7 28 27-54 63-90 (206)
98 2kl8_A OR15; structural genomi 25.2 91 0.0031 23.6 4.3 28 413-440 39-66 (85)
99 3iev_A GTP-binding protein ERA 25.1 28 0.00096 34.6 2.0 37 365-401 239-284 (308)
100 3iev_A GTP-binding protein ERA 25.0 23 0.0008 35.2 1.4 37 128-164 239-284 (308)
101 2zkq_c 40S ribosomal protein S 24.0 21 0.0007 34.7 0.7 30 26-55 45-74 (243)
102 2ba0_A Archeal exosome RNA bin 23.5 1.1E+02 0.0038 29.1 5.8 56 368-434 138-193 (229)
103 3i1m_C 30S ribosomal protein S 23.1 21 0.00073 34.4 0.6 28 27-54 64-91 (233)
104 3gku_A Probable RNA-binding pr 22.1 21 0.0007 34.3 0.3 67 130-200 93-159 (225)
105 2vqe_C 30S ribosomal protein S 21.2 31 0.0011 33.3 1.4 27 28-54 65-91 (239)
106 3u5c_D RP13, YS3, 40S ribosoma 21.0 26 0.00089 33.9 0.7 27 131-157 46-72 (240)
107 3j20_C 30S ribosomal protein S 20.9 26 0.00089 33.2 0.7 26 131-156 42-67 (210)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=3.1e-25 Score=211.64 Aligned_cols=161 Identities=19% Similarity=0.373 Sum_probs=126.4
Q ss_pred CCcEEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCC---CCCCCceEEEEecCCchhhhhhhccccccccCCCc
Q 007844 22 DDVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG---FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEV 98 (587)
Q Consensus 22 ~~~v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~---~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~ 98 (587)
++.++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+.+++.+|..
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~------------ 70 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHG------------ 70 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHH------------
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHH------------
Confidence 678999999999999999999999999999999999999753 46788999999998877544322
Q ss_pred cHHHHHHHHHHHHHHhhhhc-----------cCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCC
Q 007844 99 SSTQEAVIRVFERMWEVEAE-----------VEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (587)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~-----------~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~ 167 (587)
.+.+.+.+.... .......+...+++|+||.+++|+||||+|++|++|+++|||+|+|.+.
T Consensus 71 --------~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 71 --------FIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp --------HHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred --------HHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 222222111000 0000012235789999999999999999999999999999999999875
Q ss_pred CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCC
Q 007844 168 PACAAIDDQLIQITGATLAVKKALVAVTTCLQHLS 202 (587)
Q Consensus 168 p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~~ 202 (587)
+.++...+++|+|+|+.++|.+|+.+|.++|++++
T Consensus 143 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 143 PDGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp C----CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 44556788999999999999999999999998854
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=202.18 Aligned_cols=154 Identities=19% Similarity=0.304 Sum_probs=126.0
Q ss_pred cEEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCC-CCCCCceEEEEecCCchhhhhhhccccccccCCCccHHH
Q 007844 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG-FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (587)
Q Consensus 24 ~v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~-~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (587)
.-+++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+.++ +.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~--------------------v~ 61 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA--------------------QF 61 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH--------------------HH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH--------------------HH
Confidence 3579999999999999999999999999999999999875 57889999999998766 33
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCC-CcEEEEe
Q 007844 103 EAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAID-DQLIQIT 181 (587)
Q Consensus 103 ~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~-dr~V~I~ 181 (587)
.|...++..+.+.... .......++++|+||.+++|+||||+|++|++|+++|||+|.|..+ ..+... ++.|+|+
T Consensus 62 ~A~~~I~~~~~e~~~~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~~~~~~~v~I~ 137 (163)
T 3krm_A 62 KAQGRIYGKLKEENFF---GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPDENDQVIVKII 137 (163)
T ss_dssp HHHHHHHHHHHHTTSS---CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCCTTSEEEEEEE
T ss_pred HHHHHHHHHHhccccc---ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCCCCCceEEEEE
Confidence 4455555554433111 1123346788999999999999999999999999999999999875 223334 4589999
Q ss_pred ecHHHHHHHHHHHHHHHhcC
Q 007844 182 GATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 182 G~~e~V~~A~~~I~~~L~e~ 201 (587)
|++++|.+|..+|.+++++.
T Consensus 138 G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 138 GHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp ECHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=201.60 Aligned_cols=155 Identities=18% Similarity=0.344 Sum_probs=126.1
Q ss_pred CcEEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCCCCCCCceEEEEecCCchhhhhhhccccccccCCCccHHH
Q 007844 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (587)
Q Consensus 23 ~~v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (587)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+.+++.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~-------------------- 60 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIF-------------------- 60 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHH--------------------
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHH--------------------
Confidence 46899999999999999999999999999999999999875 56899999999876632
Q ss_pred HHHHHHHHHHHhhhhcc-C-CCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEE
Q 007844 103 EAVIRVFERMWEVEAEV-E-GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQI 180 (587)
Q Consensus 103 ~Al~~i~~~i~~~~~~~-~-~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I 180 (587)
.|...+.+.+.+..... . +.......++++|+||.+++|+||||+|++|++|+++|||+|+|.++ ..+...++.|+|
T Consensus 61 ~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~~~~~~v~I 139 (160)
T 2jzx_A 61 KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPNSTERAITI 139 (160)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTTCCEEEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCCCCceEEEE
Confidence 33333443333321110 0 00112336899999999999999999999999999999999999874 456678999999
Q ss_pred eecHHHHHHHHHHHHHHHhc
Q 007844 181 TGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 181 ~G~~e~V~~A~~~I~~~L~e 200 (587)
+|++++|.+|+.+|.+++.+
T Consensus 140 ~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 140 AGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999876
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=3.4e-24 Score=203.72 Aligned_cols=159 Identities=21% Similarity=0.325 Sum_probs=123.3
Q ss_pred CcEEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCCCCCCCceEEEEecCCchhhhhhhccccccccCCCccHHH
Q 007844 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (587)
Q Consensus 23 ~~v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (587)
+..+++|+||.+++|.||||+|++|++|+++|||+|+|.+..++..||+|+|+|+.+++.+ |.
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~-----------------A~ 63 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQH-----------------AA 63 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHH-----------------HH
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHH-----------------HH
Confidence 4578999999999999999999999999999999999987666788999999999877543 33
Q ss_pred HHHHHHHHHHHhhhhccC--------------CCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCC-
Q 007844 103 EAVIRVFERMWEVEAEVE--------------GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP- 167 (587)
Q Consensus 103 ~Al~~i~~~i~~~~~~~~--------------~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~- 167 (587)
+.+..++........... ........++++|+||.+++|+||||+|++|++|+++|||+|+|.+.
T Consensus 64 ~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~ 143 (174)
T 1j4w_A 64 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP 143 (174)
T ss_dssp HHHHHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC
T ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC
Confidence 333333322210000000 00001224689999999999999999999999999999999999885
Q ss_pred CCCCCCCCcEEEEeecHHHHHHHHHHHHHHH
Q 007844 168 PACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (587)
Q Consensus 168 p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L 198 (587)
+.+....+++|+|+|+.++|.+|+.+|.++|
T Consensus 144 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 144 PPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp TTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 4455678899999999999999999998874
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=200.43 Aligned_cols=154 Identities=14% Similarity=0.215 Sum_probs=121.3
Q ss_pred EEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCC--CCCCCceEEEEecCCchhhhhhhccccccccCCCccHHH
Q 007844 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG--FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (587)
Q Consensus 25 v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~--~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (587)
++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .++..+|+|+|+|+.+++.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~-------------------- 61 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQ-------------------- 61 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHH--------------------
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHH--------------------
Confidence 689999999999999999999999999999999999653 3467799999999876632
Q ss_pred HHHHHHHHHHHhhhhcc-C--CCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEE
Q 007844 103 EAVIRVFERMWEVEAEV-E--GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQ 179 (587)
Q Consensus 103 ~Al~~i~~~i~~~~~~~-~--~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~ 179 (587)
.|...+...+.+..... . .+......++++|+||..++|+||||+|++|++|+++|||+|.|.+. .+...++.|+
T Consensus 62 ~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~--~~~~~~~~v~ 139 (164)
T 2jvz_A 62 QACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAH 139 (164)
T ss_dssp HHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC--CTTSSEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCC--CCCCCcEEEE
Confidence 33333433333221100 0 00011113568899999999999999999999999999999999873 3445689999
Q ss_pred EeecHHHHHHHHHHHHHHHhc
Q 007844 180 ITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 180 I~G~~e~V~~A~~~I~~~L~e 200 (587)
|+|+.++|.+|+.+|.+++++
T Consensus 140 I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 140 IMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp EESCHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999976
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=194.76 Aligned_cols=154 Identities=21% Similarity=0.314 Sum_probs=128.2
Q ss_pred eEEEEEeecccccccccccchhhHhhhhhcCceEEeeCC-CCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhcccc
Q 007844 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP-LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (587)
Q Consensus 274 ~~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~-~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~~ 352 (587)
.+++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. ..+..|..++...+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~------e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP------EAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH------HHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999975 567899999999973 4566777777777655421
Q ss_pred cCCCCCCCCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHH
Q 007844 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALS 432 (587)
Q Consensus 353 ~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~ 432 (587)
. +.......+.+|.||.+++|+|||++|++|++|++.|||+|+|++.. .|. ..+++.|+|+|++++|++|+.
T Consensus 77 ~-----~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~-~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 77 F-----GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp S-----CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC-CCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred c-----ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC-CCC--CCCceEEEEEeCHHHHHHHHH
Confidence 1 11123467889999999999999999999999999999999997643 232 344568999999999999999
Q ss_pred HHHHHHhhc
Q 007844 433 EVVGRLRHN 441 (587)
Q Consensus 433 ~I~~~Lr~~ 441 (587)
+|.+.|++.
T Consensus 149 ~I~~~i~~~ 157 (163)
T 3krm_A 149 KIRDILAQV 157 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999863
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.90 E-value=1.4e-23 Score=200.21 Aligned_cols=162 Identities=21% Similarity=0.338 Sum_probs=128.2
Q ss_pred CcceEEEEEeecccccccccccchhhHhhhhhcCceEEeeCC---CCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhh
Q 007844 271 KQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARS 347 (587)
Q Consensus 271 ~~~~~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~---~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v 347 (587)
..+++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. ..+.+|..+|.+.+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~------~~v~~A~~~I~~~~ 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI------EALNAVHGFIAEKI 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH------HHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH------HHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999853 356789999999984 44566776776666
Q ss_pred hcccccCC-------CCC--CCCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEE
Q 007844 348 VEVEGQQG-------FSS--GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVI 418 (587)
Q Consensus 348 ~e~~~~~g-------~~~--g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V 418 (587)
.+...... +.+ ........+.+|.||.+++|+||||+|++|++|++.|||+|+|.+..+. ....++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~---~~~~~~~v 153 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG---INLQNRVV 153 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC---CCCCceEE
Confidence 44311000 000 0011235789999999999999999999999999999999999875432 24578999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhc
Q 007844 419 QISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 419 ~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
+|+|++++|++|+.+|.++|++.
T Consensus 154 ~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 154 TVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSC
T ss_pred EEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999874
No 8
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=195.32 Aligned_cols=156 Identities=21% Similarity=0.402 Sum_probs=127.6
Q ss_pred cceEEEEEeecccccccccccchhhHhhhhhcCceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhccc
Q 007844 272 QEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (587)
Q Consensus 272 ~~~~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~ 351 (587)
..++++|+||.+++|.||||+|.+|++|+++|||+|+|.+. +..+|.|+|+|+. ..+.+|...+.+.+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~------~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT------NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH------HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH------HHHHHHHHHHHHHHHhhc
Confidence 35689999999999999999999999999999999999965 4678999999983 455677777776665432
Q ss_pred ccCCCCCC-CCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHH
Q 007844 352 GQQGFSSG-ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNA 430 (587)
Q Consensus 352 ~~~g~~~g-~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A 430 (587)
. ...... .......+.+|.||.+++|+|||++|++|++|++.|||+|+|.+. ..| ..+++.|+|+|++++|++|
T Consensus 75 ~-~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~~~v~~A 149 (160)
T 2jzx_A 75 S-SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIPQSIIEC 149 (160)
T ss_dssp T-SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECHHHHHHH
T ss_pred c-ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCHHHHHHH
Confidence 1 111110 112346899999999999999999999999999999999999763 233 4678999999999999999
Q ss_pred HHHHHHHHhh
Q 007844 431 LSEVVGRLRH 440 (587)
Q Consensus 431 ~~~I~~~Lr~ 440 (587)
+.+|.+.|.+
T Consensus 150 ~~~I~~~i~e 159 (160)
T 2jzx_A 150 VKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998876
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=1.1e-22 Score=193.24 Aligned_cols=157 Identities=19% Similarity=0.306 Sum_probs=122.7
Q ss_pred eEEEEEeecccccccccccchhhHhhhhhcCceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhccccc
Q 007844 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQ 353 (587)
Q Consensus 274 ~~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~~~ 353 (587)
.+++|+||.+++|.||||+|++|++|+++|||+|+|.+...+..+|.|+|+|+. ..+..|..+|.+.+.+....
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP------DRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH------HHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH------HHHHHHHHHHHHHHHhcccC
Confidence 578999999999999999999999999999999999876667789999999984 44556666665555432100
Q ss_pred C-C--------CCCC---C---CCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEE
Q 007844 354 Q-G--------FSSG---E---NKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVI 418 (587)
Q Consensus 354 ~-g--------~~~g---~---~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V 418 (587)
. + ...+ + ......+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. +.+...+++.|
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~v 154 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKLF 154 (174)
T ss_dssp ---------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceEE
Confidence 0 0 0000 0 011346889999999999999999999999999999999998743 22345678999
Q ss_pred EEcCCHHHHHHHHHHHHHHH
Q 007844 419 QISGEYKNVQNALSEVVGRL 438 (587)
Q Consensus 419 ~I~G~~~~V~~A~~~I~~~L 438 (587)
+|+|++++|++|+.+|.++|
T Consensus 155 ~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 155 TIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEECCHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHHhC
Confidence 99999999999999999865
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=189.12 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=125.3
Q ss_pred eEEEEEeecccccccccccchhhHhhhhhcCceEEeeCC--CCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhccc
Q 007844 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP--LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (587)
Q Consensus 274 ~~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~--~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~ 351 (587)
++++|+||.+++|.||||+|++||+|+++|||+|++.+. .++..+|.|+|+|+. ..+..|...|...+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP------YKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH------HHHHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHHhcc
Confidence 478899999999999999999999999999999999754 345678999999973 455677777777765432
Q ss_pred ccCCCCCCC--CCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHH
Q 007844 352 GQQGFSSGE--NKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQN 429 (587)
Q Consensus 352 ~~~g~~~g~--~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~ 429 (587)
. .++.+.. ......+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..+ ...++.|+|+|++++|+.
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~~~~v~~ 149 (164)
T 2jvz_A 76 Q-GGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEH 149 (164)
T ss_dssp S-CCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESCHHHHHH
T ss_pred C-CCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcCHHHHHH
Confidence 1 1111110 0011356889999999999999999999999999999999987542 345799999999999999
Q ss_pred HHHHHHHHHhhc
Q 007844 430 ALSEVVGRLRHN 441 (587)
Q Consensus 430 A~~~I~~~Lr~~ 441 (587)
|+.+|.+.|++.
T Consensus 150 A~~~I~~~i~~~ 161 (164)
T 2jvz_A 150 AARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999998864
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=6.1e-22 Score=206.36 Aligned_cols=225 Identities=17% Similarity=0.104 Sum_probs=160.1
Q ss_pred CCceEEEEEeecceeeeeeecCc--hHHHHHHhhhCCeEEecCCC---CCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGG--RNVTRMRIESGAKIVMLPPP---ACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG--~~Ik~I~~etGa~I~I~~~p---~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
...+|+.+-||..+++.||||+| ++|++|+++|||+|+|.... ..+......|+|+|..++|++|..+|.+++-
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P- 105 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH- 105 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE-
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC-
Confidence 45899999999999999999999 99999999999999997631 1122456789999999999999999887431
Q ss_pred CCCCCCCCcccCCCccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCcceEEEEEe
Q 007844 201 LSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLF 280 (587)
Q Consensus 201 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~p~~~~~P~~~~~~~~y~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~V 280 (587)
.++.+.+
T Consensus 106 -------------------------------------------------------------------------l~i~~el 112 (376)
T 3n89_A 106 -------------------------------------------------------------------------FTVFMAL 112 (376)
T ss_dssp -------------------------------------------------------------------------EEEEEEC
T ss_pred -------------------------------------------------------------------------ceEEEEc
Confidence 1222233
Q ss_pred ecccccccccccchhhHhhhhhcCceEEeeCCCC--CCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhcccccCCCCC
Q 007844 281 SGWTASGIIGKRGAIVRSLQNASGALISFAAPLT--KSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSS 358 (587)
Q Consensus 281 P~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~~~--~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~~~~g~~~ 358 (587)
|...++. ..-+..|.+ ++.++++|.|..... +.....|+|+|.+ .....+.+|+..+.+.+.+...
T Consensus 113 p~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~---~nv~~akeA~~~Ll~~l~~~e~------ 180 (376)
T 3n89_A 113 SKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITARE---KNQHELIEAAKRLNEILFRESP------ 180 (376)
T ss_dssp TTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEG---GGHHHHHHHHHHHHHHHCC--C------
T ss_pred cccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcCh---hhHHHHHHHHHHHHHHHHhhhc------
Confidence 3322221 111234444 577999999864311 1235679999984 2233556777777777644210
Q ss_pred CCCCCCceEEEEEeCcccccccccCCC--chhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHH
Q 007844 359 GENKGDAVAVSILVGADFVGCLTGSGS--SAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVG 436 (587)
Q Consensus 359 g~~~~~~~t~~l~VP~~~vG~IIGkgG--~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~ 436 (587)
.....++.+|.|+.++|..|||++| ..|++|+++|||+|.+++.++... ...+...|+|+|+.++|++|++.|.+
T Consensus 181 --~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d-~~~~~~~ItItGs~e~V~~Ark~I~~ 257 (376)
T 3n89_A 181 --APENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE-TRGNIYEIKVVGNIDNVLKARRYIMD 257 (376)
T ss_dssp --CCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHH
T ss_pred --ccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc-ccCCceEEEEEeCHHHHHHHHHHHHh
Confidence 1134689999999999999999999 566999999999999987543110 11346799999999999999999999
Q ss_pred HHh
Q 007844 437 RLR 439 (587)
Q Consensus 437 ~Lr 439 (587)
.|=
T Consensus 258 lLP 260 (376)
T 3n89_A 258 LLP 260 (376)
T ss_dssp TSE
T ss_pred hCC
Confidence 776
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.81 E-value=1.4e-19 Score=188.62 Aligned_cols=297 Identities=10% Similarity=0.096 Sum_probs=188.0
Q ss_pred CCCCCCCcEEEEEEeccCccceeccCCC--hHHHHHHhHhCceEEEeCCC-----CCCCceEEEEecCCchhhhhhhccc
Q 007844 17 PLNLPDDVVSFRLVCPTPVVGGLIGRSG--SIISSIRRDTKCRIHCEGGF-----PGSDHRVILVVGSGSIDRRIMFCEN 89 (587)
Q Consensus 17 ~~~~~~~~v~~riLvP~~~vG~IIGk~G--~~Ik~IreeTga~I~V~~~~-----~~~~eRvI~I~G~~e~~~~a~~~~~ 89 (587)
........+++.+-||..+++.||||+| ++|++|+++|||+|+|++.. +......|+|+|..++|++
T Consensus 22 ~le~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~------ 95 (376)
T 3n89_A 22 MIEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDR------ 95 (376)
T ss_dssp CCCCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHH------
T ss_pred EEEecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHH------
Confidence 3445577899999999999999999999 99999999999999998764 1134578999999998654
Q ss_pred cccccCCCccHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCC
Q 007844 90 DVVVEGGEVSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPA 169 (587)
Q Consensus 90 ~~~~e~~~~~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~ 169 (587)
|..+|.. + .++++.+-+|...++. ..-+..|.+ ++..+++|.+...+.
T Consensus 96 -----------AR~~I~~----l--------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~ 143 (376)
T 3n89_A 96 -----------ARMLMRR----N--------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPE 143 (376)
T ss_dssp -----------HHHHHHH----S--------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-
T ss_pred -----------HHHHHHh----c--------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccc
Confidence 3333332 1 1455555555543222 111335555 567999999865321
Q ss_pred CCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 007844 170 CAAIDDQLIQITGATLAVKKALVAVTTCLQHLSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNAS 249 (587)
Q Consensus 170 ~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~p~~~~~P~~~~~~~~y~~ 249 (587)
........|+|+|...+|.+|..++..+++......
T Consensus 144 ~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e-------------------------------------------- 179 (376)
T 3n89_A 144 KNGIVTTYLRITAREKNQHELIEAAKRLNEILFRES-------------------------------------------- 179 (376)
T ss_dssp ----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC----------------------------------------------
T ss_pred ccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhh--------------------------------------------
Confidence 111125679999999877776666655554321000
Q ss_pred ccCCCCCCCCCCCCCCCccCCCcceEEEEEeecccccccccccc--hhhHhhhhhcCceEEeeCCCC----CCCccEEEE
Q 007844 250 EFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRG--AIVRSLQNASGALISFAAPLT----KSGERVVTI 323 (587)
Q Consensus 250 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vG~IIGk~G--~~Ik~I~~~tga~I~i~~~~~----~~~er~V~I 323 (587)
......++..|.|+..+|..|||++| ..|++|+++||++|.|++... ......|+|
T Consensus 180 ------------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItI 241 (376)
T 3n89_A 180 ------------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKV 241 (376)
T ss_dssp ------------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEE
T ss_pred ------------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEE
Confidence 00123468889999999999999998 566999999999999985421 123568999
Q ss_pred EecCCcCCCCChHHHHHHHHHhhhhcccccCCCCCCCCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcC
Q 007844 324 SALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVG 403 (587)
Q Consensus 324 sG~~~p~~~~~~a~~Av~~i~~~v~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~ 403 (587)
+|+. ..+.+|...|.+.+ .+...+.++.+..-.-...--..|-.+.++.++-|.|.+
T Consensus 242 tGs~------e~V~~Ark~I~~lL-----------------Pv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 298 (376)
T 3n89_A 242 VGNI------DNVLKARRYIMDLL-----------------PISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTP 298 (376)
T ss_dssp ESCH------HHHHHHHHHHHHTS-----------------EEEEEEEEEGGGBC--------CBEEEECTTSCEEEEEE
T ss_pred EeCH------HHHHHHHHHHHhhC-----------------CEEEEEecCCcccccccccchhHHHHHHHhcCeEEEEee
Confidence 9995 45556665555543 456667766654433334444456667889999999976
Q ss_pred CCcccccCCCC---CcEEEEcC---CHHHHHHHHHHHHH
Q 007844 404 GEQVLGCAAQN---DVVIQISG---EYKNVQNALSEVVG 436 (587)
Q Consensus 404 ~~~~p~~~~~~---~r~V~I~G---~~~~V~~A~~~I~~ 436 (587)
..--|..-.++ -..|.|++ +..++..|...++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~s~e~n~~~~y~~~~~~l~ 337 (376)
T 3n89_A 299 SVYEPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLS 337 (376)
T ss_dssp EEECCSSSSCCCEEEEEEEEEEEGGGHHHHHHHHHHHBC
T ss_pred cCCCchhhcccccccceEEEEEEeccHHHHHHHHHHHhC
Confidence 43222100111 13455554 45566666655544
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.70 E-value=2.7e-17 Score=151.04 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=101.5
Q ss_pred ceEEEEEeecccccccccccchhhHhhhhhcCceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhcccc
Q 007844 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (587)
Q Consensus 273 ~~~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~~ 352 (587)
.++.+++||.+.+|.+||++|++|+.|++++| |.+..... +...+++.|. +|+ ++..+.. +.+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~--~~~~~i~~~~-------~p~--~v~~~~~-~l~--- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE--DTCTFHIYGE-------DQD--AVKKARS-FLE--- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET--TTTEEEEEES-------SHH--HHHHHHH-HHC---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC--CchheeeccC-------CHH--HHHHHHH-hhh---
Confidence 45788999999999999999999999999999 44432211 1234666665 222 2222211 111
Q ss_pred cCCCCCCCCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCC-eEEEcCCCcccccCCCCC--cEEEEcCCHHHHHH
Q 007844 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGT-DIKLVGGEQVLGCAAQND--VVIQISGEYKNVQN 429 (587)
Q Consensus 353 ~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa-~I~i~~~~~~p~~~~~~~--r~V~I~G~~~~V~~ 429 (587)
....++.||.+++|++|||+|++|+.|++.||| +|+|.+.++.. ...++ +.|+|+|++++|+.
T Consensus 66 ------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~--~~~~~~~~~vtI~G~~~~v~~ 131 (144)
T 2qnd_A 66 ------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN--VPQEEGMVPFVFVGTKDSIAN 131 (144)
T ss_dssp ------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC--CCCCTTEEEEEEEEEHHHHHH
T ss_pred ------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC--ccccCCeeEEEEEeCHHHHHH
Confidence 124789999999999999999999999999997 99998755421 11233 35899999999999
Q ss_pred HHHHHHHHHhh
Q 007844 430 ALSEVVGRLRH 440 (587)
Q Consensus 430 A~~~I~~~Lr~ 440 (587)
|+.+|..+|..
T Consensus 132 Ak~li~~~l~~ 142 (144)
T 2qnd_A 132 ATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.69 E-value=5.1e-17 Score=149.26 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=100.1
Q ss_pred cEEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCCCCCCCceEEEEecCCchhhhhhhccccccccCCCccHHHH
Q 007844 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQE 103 (587)
Q Consensus 24 ~v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~~ 103 (587)
.++.+++||.+.+|++||++|++|++|++++| |++-... ..+++.+...+.++.+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~v---------------------- 57 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDAV---------------------- 57 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHHH----------------------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHHH----------------------
Confidence 35789999999999999999999999999999 5443221 2244544444444332
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCC-eEEecCCC-CCCCCCCc--EEE
Q 007844 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGA-KIVMLPPP-ACAAIDDQ--LIQ 179 (587)
Q Consensus 104 Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa-~I~I~~~p-~~~~~~dr--~V~ 179 (587)
..+.. +.. ...+++.||.+++|++|||+|++|+.|++.||| +|.|.+.. ......++ .|+
T Consensus 58 --~~~~~-~l~-------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vt 121 (144)
T 2qnd_A 58 --KKARS-FLE-------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFV 121 (144)
T ss_dssp --HHHHH-HHC-------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEE
T ss_pred --HHHHH-hhh-------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEE
Confidence 11111 111 113789999999999999999999999999997 99998741 11122344 489
Q ss_pred EeecHHHHHHHHHHHHHHHhc
Q 007844 180 ITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 180 I~G~~e~V~~A~~~I~~~L~e 200 (587)
|+|+.++|++|..+|.++|..
T Consensus 122 I~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 122 FVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999965
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.56 E-value=7.9e-15 Score=143.22 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=99.6
Q ss_pred EEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCCCCCCCceEEEEecCCchhhhhhhccccccccCCCccHHHHH
Q 007844 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEA 104 (587)
Q Consensus 25 v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~~A 104 (587)
-+.++.||.+++|.|||++|++|+.|+++|||+|+++. .++.|.|.++....+ ...++.|
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d---------------~~~i~kA 93 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETED---------------PLAVWKA 93 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCS---------------HHHHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCC---------------HHHHHHH
Confidence 35689999999999999999999999999999999963 246788987652100 0112222
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCceEEE-EEe-----ec------ceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCC
Q 007844 105 VIRVFERMWEVEAEVEGDGDGDDVAYCG-LLA-----NT------TKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAA 172 (587)
Q Consensus 105 l~~i~~~i~~~~~~~~~~~~~~~~vt~r-llV-----p~------~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~ 172 (587)
...|..-......+.... --.+...+. +-+ +. ..+|+||||+|++|+.|++.|||+|.|.
T Consensus 94 ~~~I~~i~rg~~~e~g~~-ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------- 165 (219)
T 2e3u_A 94 RDIVLAIGRGFSPERAFR-LLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------- 165 (219)
T ss_dssp HHHHHHHHTTCCHHHHGG-GGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-------
T ss_pred HHHHHHHhccCCccccce-eccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-------
Confidence 222222110000000000 000112222 222 22 2689999999999999999999999994
Q ss_pred CCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 173 IDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 173 ~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
++.|.|.|+.++|+.|..+|.+++.+.
T Consensus 166 --~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 166 --GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp --TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred --CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999999663
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.51 E-value=2.7e-14 Score=139.49 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=104.9
Q ss_pred EEEEEeecccccccccccchhhHhhhhhcCceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhcccccC
Q 007844 275 ALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQ 354 (587)
Q Consensus 275 ~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~~~~ 354 (587)
...+.||.+.+|.|||++|.+|+.|+++||++|+++.. ++.|+|.++..-.+ ...++.|...|...+.....+.
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d-~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETED-PLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCS-HHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCC-HHHHHHHHHHHHHHhccCCccc
Confidence 56799999999999999999999999999999999832 46799998731111 1345566665555431111000
Q ss_pred CCCCCCCCCCceEEEEEeC-----------cccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCC
Q 007844 355 GFSSGENKGDAVAVSILVG-----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE 423 (587)
Q Consensus 355 g~~~g~~~~~~~t~~l~VP-----------~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~ 423 (587)
+... . ........+.++ ...+|+||||+|++|+.|++.|||+|.|.. +.|+|.|+
T Consensus 109 g~~l-l-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i~G~ 174 (219)
T 2e3u_A 109 AFRL-L-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAIIGN 174 (219)
T ss_dssp HGGG-G-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEEEEC
T ss_pred ccee-c-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEEEeC
Confidence 0000 0 011122223333 237999999999999999999999999953 56999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007844 424 YKNVQNALSEVVGRLRH 440 (587)
Q Consensus 424 ~~~V~~A~~~I~~~Lr~ 440 (587)
+++++.|+.+|...|..
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999865
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.46 E-value=5.1e-14 Score=113.95 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=65.3
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (587)
...++.+|+||.+++|+|||++|++|++|+++|||+|+|.+. +..+|.|+|+|+++++.+|+.+|..+|++
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999863 24689999999999999999999999986
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.45 E-value=1.4e-13 Score=113.99 Aligned_cols=74 Identities=20% Similarity=0.414 Sum_probs=66.4
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. .+.+++.|+|+|++++|++|+.+|.+++++.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-----EGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT-----SCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCC-----CCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999997632 2467899999999999999999999999863
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.45 E-value=8.4e-14 Score=112.71 Aligned_cols=70 Identities=30% Similarity=0.458 Sum_probs=65.4
Q ss_pred CceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. +..+|+|+|+|++++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999873 45789999999999999999999999976
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.45 E-value=1.1e-13 Score=112.81 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=65.0
Q ss_pred ceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007844 365 AVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 365 ~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (587)
..+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..+.. .+..++.|+|+|+++++++|+.+|.++|++
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 36889999999999999999999999999999999998754321 246789999999999999999999998764
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.45 E-value=7.6e-14 Score=113.86 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=65.7
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (587)
..++.+|.||.+++|+|||++|++|++|++.|||+|+|.+.. .+..++.|+|+|+++++++|+.+|.++|++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-----EGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCC-----CCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 568899999999999999999999999999999999998631 356799999999999999999999999875
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=1.3e-13 Score=114.20 Aligned_cols=73 Identities=16% Similarity=0.387 Sum_probs=65.3
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
..++.+|.||.+++|+|||++|++|++|++.|||+|+|.+.. .+..++.|+|+|+++++++|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~-----~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-----EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCC-----CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 568999999999999999999999999999999999998632 2567999999999999999999999988753
No 23
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=113.99 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=63.6
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (587)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ +++.|+|+|+++++++|+++|.++++.
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999998632 368999999999999999999997664
No 24
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=111.04 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=66.8
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
.++.+|+||.+++|+||||+|++|++|+++|||+|+|.+ .++...+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN--PVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC--CCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC--CCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999999999987 35677899999999999999999999999975
No 25
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.41 E-value=4.2e-13 Score=111.10 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=66.9
Q ss_pred CceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+ .++...+|+|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999987 34567889999999999999999999999976
No 26
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=3.2e-13 Score=111.85 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=66.6
Q ss_pred CceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
..++.+|+||.+.+|+||||+|++|++|+++|||+|+|.+ .+++..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~--~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN--PVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECC--CCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEec--CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999987 356678999999999999999999999999774
No 27
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.41 E-value=3.3e-13 Score=109.99 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=65.8
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCC-CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~-p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
.++++|+||.+.+|+||||+|++|++|+++|||+|+|.+. ..+++..+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999875 234567889999999999999999999998864
No 28
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.40 E-value=5.1e-13 Score=113.07 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=67.1
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+ ...++.|+|+|++++|++|+.+|.++|++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999987432 456899999999999999999999998874
No 29
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=3.1e-13 Score=113.17 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=66.1
Q ss_pred eEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 366 VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 366 ~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
.+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..+.. .+..++.|+|+|++++++.|+.+|.++|.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999998754321 2467899999999999999999999998864
No 30
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.38 E-value=2.9e-13 Score=113.84 Aligned_cols=74 Identities=20% Similarity=0.414 Sum_probs=67.0
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. ...+++.|+|+|++++|++|+.+|.+++++.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-----EGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC-----SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCC-----CCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999997632 2467899999999999999999999999874
No 31
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.37 E-value=6e-13 Score=111.93 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=67.7
Q ss_pred CCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
...++++|+||.+.+|.||||+|++|++|+++|||+|+|.+ .++...+|+|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~--~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS--CCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC--CCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999987 34567899999999999999999999999987
No 32
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=114.34 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=65.3
Q ss_pred EEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007844 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (587)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (587)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+ |. .+..++.|+|+|++++|++|+.+|.++|++..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~~-~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-PN-GDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-TT-CCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-CC-CCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999999999987533 21 24568999999999999999999999988743
No 33
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.35 E-value=1.5e-12 Score=124.16 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=100.1
Q ss_pred EEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCCCCCCCceEEEEecCCchhhhhhhccccccccCCCccHHHHHH
Q 007844 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAV 105 (587)
Q Consensus 26 ~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~~~~eRvI~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~~Al 105 (587)
.++++||.+.+|.|||++|++++.|++++|++|+++. .++.+.|..+....+. ..+..|.+.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp------------~~i~KA~dlI 67 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPP------------VNLMKAAEVV 67 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCH------------HHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCH------------HHHHHHHHHH
Confidence 3699999999999999999999999999999999963 4677888733221000 0012233333
Q ss_pred HHHHHHHHhhhhccCCCCCCCCceEEEEE-ee----------cceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCC
Q 007844 106 IRVFERMWEVEAEVEGDGDGDDVAYCGLL-AN----------TTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAID 174 (587)
Q Consensus 106 ~~i~~~i~~~~~~~~~~~~~~~~vt~rll-Vp----------~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~ 174 (587)
..+..-. + .+... .-.++++.+.++ ++ ....|+||||+|.+|+.|+..|||+|.|.
T Consensus 68 ~ai~rgf-~--~e~A~-~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~--------- 134 (191)
T 1tua_A 68 KAISLGF-P--PEKAF-RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG--------- 134 (191)
T ss_dssp HHHHHTC-C--HHHHG-GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC---------
T ss_pred HHHHcCC-C--HHHhh-hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc---------
Confidence 2221100 0 00000 000013444433 33 23689999999999999999999999994
Q ss_pred CcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 175 DQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 175 dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
++.|.|.|+++++..|...|.+++..
T Consensus 135 ~~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 135 EYEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp SSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999965
No 34
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=108.25 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=65.4
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (587)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.... ....+|.|+|+|+++++++|+.+|.+.+++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999999999999874331 246789999999999999999999998764
No 35
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.34 E-value=1.6e-12 Score=110.46 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=67.6
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
+..++.+|.||.+++|+||||+|++||+|+++|||+|+|.+.... ....+|.|+|+|++++|++|+.+|.++|++.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999999999999999999999999864331 1346899999999999999999999998864
No 36
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=8.6e-13 Score=110.49 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=67.0
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCC-CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~-p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
.++++|+||.+.+|+||||+|++|++|+++|||+|.|.+. ...++..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999874 2345678899999999999999999999999763
No 37
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=112.94 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=64.3
Q ss_pred ceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007844 365 AVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (587)
Q Consensus 365 ~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (587)
..+.+|.||.+++++||||+|++||+|+++|||+|+|.+... ...+|.|+|+|+++++++|+.+|.+.+++..
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 347899999999999999999999999999999999986432 3568999999999999999999999998744
No 38
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=106.92 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=66.7
Q ss_pred CCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
....+.+|.||.+.+|.||||+|++|++|+++|||+|.|..+.......+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 446789999999999999999999999999999999999885222456899999999999999999999998864
No 39
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.32 E-value=1.6e-12 Score=109.93 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=67.5
Q ss_pred CCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
...++.+|+||.+.+|+||||+|++|++|+++|||+|+|... .+...+|.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~--~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD--SGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSC--CTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCC--CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999999999999874 34567899999999999999999999999873
No 40
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=113.25 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=65.0
Q ss_pred EEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCC-CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 130 t~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~-p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
+++|+||.+++|+||||+|++||+|+++|||+|+|.+. .......+|+|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999885 2233457899999999999999999999999874
No 41
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.30 E-value=2.1e-12 Score=109.71 Aligned_cols=77 Identities=26% Similarity=0.430 Sum_probs=68.0
Q ss_pred CCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 125 ~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
....++.+|+||.+.+|+||||+|++|++|+++|||+|.|.++.......+|+|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34578999999999999999999999999999999999998751112447899999999999999999999999773
No 42
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.9e-12 Score=108.16 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=67.9
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (587)
...++.+|.||.++++.|||++|++|++|+++|||+|+|++..+ .+++.|+|+|+++++++|+++|...++++.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999976432 347899999999999999999999988866
Q ss_pred cC
Q 007844 443 KS 444 (587)
Q Consensus 443 ~~ 444 (587)
-+
T Consensus 88 ~~ 89 (95)
T 2ctm_A 88 AD 89 (95)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 43
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.30 E-value=3.1e-12 Score=110.70 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (587)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+. ...+++.|+|+|+.+++++|+.+|.+++++..
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG---TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 467899999999999999999999999999999999999875431 12358999999999999999999999997643
No 44
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.29 E-value=4.4e-12 Score=120.85 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=103.2
Q ss_pred EEEEeecccccccccccchhhHhhhhhcCceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHHhhhhcccccCC
Q 007844 276 LRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQG 355 (587)
Q Consensus 276 ~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~~~v~e~~~~~g 355 (587)
+++.||.+.+|.|||++|++++.|++.+|++|+++. .++.|+|..+..- ......+.|...+..-......+..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t-~dp~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEG-IPPVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTT-SCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCC-CCHHHHHHHHHHHHHHHcCCCHHHh
Confidence 578999999999999999999999999999999983 3678888854211 1113455665555333221110000
Q ss_pred CCCCCCCCCceEEEEEeC----------cccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHH
Q 007844 356 FSSGENKGDAVAVSILVG----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYK 425 (587)
Q Consensus 356 ~~~g~~~~~~~t~~l~VP----------~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~ 425 (587)
. ..-.+...-..+.++ ....|+|||++|.+|+.|++.|||+|.|.. ..|.|.|+++
T Consensus 80 ~--~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------------~~v~i~G~~~ 145 (191)
T 1tua_A 80 F--RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------------YEVAIIGDYE 145 (191)
T ss_dssp G--GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------------SEEEEEEEHH
T ss_pred h--hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------------CEEEEEeChH
Confidence 0 000112222334444 246899999999999999999999999953 4899999999
Q ss_pred HHHHHHHHHHHHHhh
Q 007844 426 NVQNALSEVVGRLRH 440 (587)
Q Consensus 426 ~V~~A~~~I~~~Lr~ 440 (587)
+++.|...|...+..
T Consensus 146 ~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 146 RAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998864
No 45
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=6.5e-12 Score=107.19 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=65.2
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (587)
...+.+|.||.++++.|||++|++|++|+++|||+|+|++..+ ....++.|+|+|+.+++++|+.+|...+++
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~----~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD----GNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT----CSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999987543 134679999999999999999999998875
No 46
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.27 E-value=4.1e-12 Score=102.11 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=60.7
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGR 437 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~ 437 (587)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. ..++.|+|+|+.+++++|+.+|...
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999998632 3568999999999999999999874
No 47
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=3.5e-12 Score=105.57 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
...++++|.||.+++|+||||+|++||+|+++|||+|+|.+. .++++|+|+|+.++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-----~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-----DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-----SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-----CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999762 2478999999999999999999998764
No 48
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=4.9e-12 Score=109.62 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=64.2
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
..+++|+||.+.+++||||+|++||+|+++|||+|+|.++ .....+|+|+|+|+.++|.+|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~--~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSS--CSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3468899999999999999999999999999999999873 34557899999999999999999999999873
No 49
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=6.5e-12 Score=106.63 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=64.7
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
...++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ ..++.|+|+|+++++++|+.+|...+++.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4568999999999999999999999999999999999998632 23579999999999999999999988764
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.25 E-value=8.5e-12 Score=107.97 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=66.2
Q ss_pred CceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
.+++.+|+||.+.+|+||||+|++|++|+++|||+|.|.+........++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 478899999999999999999999999999999999998741111236899999999999999999999999764
No 51
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=2.8e-11 Score=104.60 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=64.2
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (587)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. ...+.|+|+|+.+++++|+.+|...+++..
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 458999999999999999999999999999999999998633 235699999999999999999999887643
No 52
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=5.6e-11 Score=101.39 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=64.9
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
..++.|.||...++.||||+|++|++|+++|||+|.|.++ ..+...++.|+|+|..++|.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~-g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDK-DDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCT-TTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCC-CCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999874 22334678999999999999999999999876
No 53
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.14 E-value=3.8e-11 Score=96.41 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=60.6
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHH
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L 198 (587)
..+..|.||..++|.|||++|++|++|+++|||+|.|.++ +..+|.|+|+|..++|.+|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD----SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC----CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC----CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999773 236789999999999999999998764
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=4.2e-11 Score=101.62 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=64.8
Q ss_pred CCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
+..++.+|.||...+|.|||++|++|++|+++|||+|+|.+. ...++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~----~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP----DDPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT----TSSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC----CCCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 347899999999999999999999999999999999999762 224689999999999999999999999774
No 55
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.10 E-value=9.7e-11 Score=99.49 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=65.3
Q ss_pred CCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
...++..|.||..+++.|||++|++|++|+++|||+|+|..+ ....++.|+|+|..++|.+|+.+|..++.+.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~---g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS---GAPDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT---TCSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCC---CCCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999763 2235789999999999999999999999773
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1.3e-10 Score=98.50 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhh-CCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVT-GTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~T-Ga~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
.+.++.+|.||.++++.|||++|++|++|+++| ||+|.|++. +...+.|+|+|+.++|++|+.+|...+.+.
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 567899999999999999999999999999999 999999763 345679999999999999999999988763
No 57
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.01 E-value=3.4e-10 Score=97.75 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=62.6
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
+++..|.||...++.|||++|++|++|+++|||+|.|.+. +...+.|+|+|..++|.+|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~----g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP----ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT----TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999999773 22456999999999999999999999876
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.00 E-value=5.5e-10 Score=96.00 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=61.3
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHh-hCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDV-TGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~-TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
..++.+|.||.++|++|||++|++|++|+++ ++++|+|++ +++.|+|+|+++.|.+|+.+|...+++.
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999999999999996 599999975 2578999999999999999999988763
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=6.1e-10 Score=95.73 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=61.2
Q ss_pred ceEEEEEeecceeeeeeecCchHHHHHHhh-hCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Q 007844 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIE-SGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (587)
Q Consensus 128 ~vt~rllVp~~~vG~IIGkgG~~Ik~I~~e-tGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (587)
.++.+|.||..++++|||++|++|++|+++ ++++|.|+. .++.|+|+|+.+.|.+|..+|..++.+.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 599999854 4679999999999999999999999763
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.88 E-value=1.9e-09 Score=91.39 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=64.9
Q ss_pred CCCceEEEEEeecceeeeeeecCchHHHHHHhhh-CCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIES-GAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 125 ~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~et-Ga~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
.++.++..|.||..+++.|||++|++|++|+++| ||+|.|... +...+.|+|+|..++|.+|+.+|.+++.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE----GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT----TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999999999 999999762 34567899999999999999999999976
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.73 E-value=4e-09 Score=88.03 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=62.3
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCe-EEEcCCCcccccCCCCCcEEEEcC-CHHHHHHHHHHHHHHHhh
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTD-IKLVGGEQVLGCAAQNDVVIQISG-EYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~-I~i~~~~~~p~~~~~~~r~V~I~G-~~~~V~~A~~~I~~~Lr~ 440 (587)
...+..+|.||.+++|.+||++|++|++|++.|||+ |.|.+ ++..|+|.| +.+++++|+.+|...-..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 356889999999999999999999999999999998 99953 358999999 899999999999875444
Q ss_pred cccCc
Q 007844 441 NLKSG 445 (587)
Q Consensus 441 ~~~~~ 445 (587)
+.++.
T Consensus 82 ~~vp~ 86 (91)
T 2cpq_A 82 IQVPS 86 (91)
T ss_dssp CCCCS
T ss_pred EecCh
Confidence 44443
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.51 E-value=7.5e-08 Score=80.33 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCceEEEEEeecceeeeeeecCchHHHHHHhhhCCe-EEecCCCCCCCCCCcEEEEee-cHHHHHHHHHHHHHHHh
Q 007844 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAK-IVMLPPPACAAIDDQLIQITG-ATLAVKKALVAVTTCLQ 199 (587)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~-I~I~~~p~~~~~~dr~V~I~G-~~e~V~~A~~~I~~~L~ 199 (587)
...+...|.||.+.+|.+||++|++|++|+++|||+ |.|.. ++..|+|.| +.+++.+|+.+|..+-.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-------ddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-------DTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-------CCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 346888999999999999999999999999999998 99964 458999999 69999999988765443
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.44 E-value=3.7e-07 Score=81.75 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=63.0
Q ss_pred CceEEEEEeCcc------cccccccCCCchhHHHHHhhCCeEEEcCCCcc-----------cccCCCCCcEEEEcC-CHH
Q 007844 364 DAVAVSILVGAD------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV-----------LGCAAQNDVVIQISG-EYK 425 (587)
Q Consensus 364 ~~~t~~l~VP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~-----------p~~~~~~~r~V~I~G-~~~ 425 (587)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.-. +.....++-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999988 88999999999999999999999999763210 000123467888888 578
Q ss_pred HHHHHHHHHHHHHhhcc
Q 007844 426 NVQNALSEVVGRLRHNL 442 (587)
Q Consensus 426 ~V~~A~~~I~~~Lr~~~ 442 (587)
.+++|+.+|...|..++
T Consensus 85 ~~~~A~~~I~~ll~~~~ 101 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGI 101 (131)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999987744
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.35 E-value=6.9e-07 Score=80.02 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=61.7
Q ss_pred ceEEEEEeecc------eeeeeeecCchHHHHHHhhhCCeEEecCCC--------------CCCCCCCcEEEEeec-HHH
Q 007844 128 VAYCGLLANTT------KIGVVVGKGGRNVTRMRIESGAKIVMLPPP--------------ACAAIDDQLIQITGA-TLA 186 (587)
Q Consensus 128 ~vt~rllVp~~------~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p--------------~~~~~~dr~V~I~G~-~e~ 186 (587)
.++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|.... ......+-.|.|++. .++
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 68899999988 888999999999999999999999997530 001234668889996 999
Q ss_pred HHHHHHHHHHHHhc
Q 007844 187 VKKALVAVTTCLQH 200 (587)
Q Consensus 187 V~~A~~~I~~~L~e 200 (587)
+.+|+.+|..+|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 65
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=2.8e-06 Score=74.59 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=58.2
Q ss_pred CceEEEEEeCcc-------cccccccCCCchhHHHHHhhCCeEEEcCCCc-----ccccCCCCCcEEEEc-CCHHHHHHH
Q 007844 364 DAVAVSILVGAD-------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ-----VLGCAAQNDVVIQIS-GEYKNVQNA 430 (587)
Q Consensus 364 ~~~t~~l~VP~~-------~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~-----~p~~~~~~~r~V~I~-G~~~~V~~A 430 (587)
...+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+.- ...-...++-.|.|+ .+.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 357788888764 8999999999999999999999999964311 000011234567776 568899999
Q ss_pred HHHHHHHHhh
Q 007844 431 LSEVVGRLRH 440 (587)
Q Consensus 431 ~~~I~~~Lr~ 440 (587)
+.+|...|..
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999998885
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=1.6e-06 Score=76.13 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred ceEEEEEeecc-------eeeeeeecCchHHHHHHhhhCCeEEecCCC--------CCCCCCCcEEEEeec-HHHHHHHH
Q 007844 128 VAYCGLLANTT-------KIGVVVGKGGRNVTRMRIESGAKIVMLPPP--------ACAAIDDQLIQITGA-TLAVKKAL 191 (587)
Q Consensus 128 ~vt~rllVp~~-------~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p--------~~~~~~dr~V~I~G~-~e~V~~A~ 191 (587)
.++.+|.||-. .+|.|||++|.+||+|+++|||+|.|..+. ......+-.|.|.+. .+++.+|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 57788988875 788999999999999999999999997320 001123456778766 99999999
Q ss_pred HHHHHHHhc
Q 007844 192 VAVTTCLQH 200 (587)
Q Consensus 192 ~~I~~~L~e 200 (587)
.+|.++|.+
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999975
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.92 E-value=8.8e-06 Score=73.29 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=55.2
Q ss_pred eEEEEEeCcc------cccccccCCCchhHHHHHhhCCeEEEcCCCcc------------cccC-CCCCcEEEEcCC-HH
Q 007844 366 VAVSILVGAD------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV------------LGCA-AQNDVVIQISGE-YK 425 (587)
Q Consensus 366 ~t~~l~VP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~------------p~~~-~~~~r~V~I~G~-~~ 425 (587)
++.+|.||-+ ++|.|||++|.++|+|+++|||+|.|-.+.-. |.+. ..+.--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4667888854 59999999999999999999999999865410 1111 223347778874 32
Q ss_pred -----HHHHHHHHHHHHHh
Q 007844 426 -----NVQNALSEVVGRLR 439 (587)
Q Consensus 426 -----~V~~A~~~I~~~Lr 439 (587)
.+++|+.+|...|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78999999988776
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.88 E-value=8.1e-06 Score=73.54 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=56.1
Q ss_pred eEEEEEeecce------eeeeeecCchHHHHHHhhhCCeEEecCCCCC----------------CCCCCcEEEEeec-HH
Q 007844 129 AYCGLLANTTK------IGVVVGKGGRNVTRMRIESGAKIVMLPPPAC----------------AAIDDQLIQITGA-TL 185 (587)
Q Consensus 129 vt~rllVp~~~------vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~----------------~~~~dr~V~I~G~-~e 185 (587)
++.++.||.+. +|.|||++|.++|+|+++|||+|.|..+-.. ....+=-|.|++. .+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788999765 8999999999999999999999999864100 0112237889985 32
Q ss_pred -----HHHHHHHHHHHHHhc
Q 007844 186 -----AVKKALVAVTTCLQH 200 (587)
Q Consensus 186 -----~V~~A~~~I~~~L~e 200 (587)
.+.+|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 799999999999864
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.69 E-value=4.2e-05 Score=85.41 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEE
Q 007844 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (587)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V 178 (587)
..|.++..+++..+.+...+...+...-.+....|-||.+.++.|||+||++||+|+++|||+|.|.. +..|
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------~G~V 608 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------EETF 608 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS--------SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC--------CcEE
Confidence 44666666666665544332211122233667888999999999999999999999999999999954 5789
Q ss_pred EEeec-HHHHHHHHHHHHHHH
Q 007844 179 QITGA-TLAVKKALVAVTTCL 198 (587)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L 198 (587)
.|.|. .+++.+|+.+|..++
T Consensus 609 ~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 609 SVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEESSHHHHHHHHHHTTC--
T ss_pred EEEeCCHHHHHHHHHHHHHHh
Confidence 99998 789999999987654
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.62 E-value=5.3e-05 Score=84.58 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=55.6
Q ss_pred CCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCC-HHHHHHHHHHHHHHH
Q 007844 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE-YKNVQNALSEVVGRL 438 (587)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~-~~~V~~A~~~I~~~L 438 (587)
......++.||.++++.|||+||++||+|+++|||+|.|.+ +-.|.|.|+ .+.+++|+++|.+.+
T Consensus 564 ~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 564 NGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-----------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp TCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred cCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999999999999953 578999987 578999999987654
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.59 E-value=0.00013 Score=64.49 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=59.7
Q ss_pred EEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHh
Q 007844 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLR 439 (587)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I~~~Lr 439 (587)
...+.|.++.++.|+|++|+.|+.|+..|+|.|+|..-+ .++.-.|+|.|++..-..|+.+|.....
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999998753 2468999999999999999999987655
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.54 E-value=4e-05 Score=69.41 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=72.1
Q ss_pred EEEEEEeccCccceeccCCChHHHHHHhHhCceEEEeCCCCCCCceEEEEecCCch-hhhhhhccccccccCCCccHHHH
Q 007844 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQE 103 (587)
Q Consensus 25 v~~riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~~~~eRvI~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~ 103 (587)
-.+.++|+...+|+.||++|++|+.|+++.|-+|+|-....+ ++. +.++ ++||.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~~~fI~na-------------LsPA~- 90 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------LERIVKNL-------------FPGVK- 90 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------HHHHHHHH-------------STTSC-
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------HHHHHHHh-------------cCCce-
Confidence 356789999999999999999999999999999998543211 110 0000 11110
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEec
Q 007844 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVML 165 (587)
Q Consensus 104 Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~ 165 (587)
+....... . +....+.+.||..+.+..|||+|.+++-..+-||.+|.|.
T Consensus 91 --------V~~V~i~~----~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 91 --------IESINVRE----R-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp --------EEEEEEEE----E-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred --------EEEEEEee----c-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00000000 0 1256788999999999999999999999999999887764
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.00 E-value=0.0011 Score=58.64 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=59.6
Q ss_pred EEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 130 t~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
.+.+.|.+..++.|+|++|+.|+.|+..|+|.|++... . .+..--|+|.|++..=.+|+.+|..+..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~--~-s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW--G-PERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC--C-TTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc--C-CCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999884 2 23567799999999999999999988754
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.88 E-value=0.00047 Score=77.89 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEE
Q 007844 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (587)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V 178 (587)
..|.++..+++..+.+.....-.+-....+....|-||.+.++.|||+||.+||+|.++||++|.|.. |..|
T Consensus 540 ~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------dG~v 611 (726)
T 4aid_A 540 AQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------DGVV 611 (726)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC--------CceE
Confidence 44666666666665543322211111223456678899999999999999999999999999999954 4567
Q ss_pred EEeec-HHHHHHHHHHHHHHHhc
Q 007844 179 QITGA-TLAVKKALVAVTTCLQH 200 (587)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L~e 200 (587)
.|.+. .+++.+|+.+|..++.+
T Consensus 612 ~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 612 KVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --CCSCHHHHHHHHHC-------
T ss_pred EEEeCCHHHHHHHHHHHHHHhhh
Confidence 77776 89999999999988864
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.86 E-value=0.00066 Score=61.41 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=72.7
Q ss_pred eEEEEEeecccccccccccchhhHhhhhhcCceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHH--hhhhccc
Q 007844 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVE 351 (587)
Q Consensus 274 ~~~~i~VP~~~vG~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~--~~v~e~~ 351 (587)
..+.++|+...+|..||++|.+|+.|.++.|-+|.|-.-..+ +. .-+...+ .++....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-------------------~~-~fI~naLsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-------------------LE-RIVKNLFPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-------------------HH-HHHHHHSTTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-------------------HH-HHHHHhcCCceEEEEE
Confidence 366788999999999999999999999999999877643211 00 0010000 0111100
Q ss_pred ccCCCCCCCCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcC
Q 007844 352 GQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVG 403 (587)
Q Consensus 352 ~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~ 403 (587)
.. ..+......+.||.++.+..|||+|.+++-..+.||.+|.|.+
T Consensus 96 i~-------~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 96 VR-------ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EE-------EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred Ee-------ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 00 0023467889999999999999999999999999999887743
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.86 E-value=0.0006 Score=77.04 Aligned_cols=97 Identities=12% Similarity=0.154 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhhhhcccccCCCCCCCCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCC
Q 007844 335 PVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQN 414 (587)
Q Consensus 335 ~a~~Av~~i~~~v~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~ 414 (587)
.+.++...|++.+.+..... .. ..........++.||.++++.|||+||.+||+|+++|||+|.|.+
T Consensus 541 ~A~~g~~~I~~~m~~al~~~-r~-~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d----------- 607 (726)
T 4aid_A 541 QAKEGRAHILGEMNKAMDAP-RA-DVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND----------- 607 (726)
T ss_dssp HHHHHHHHHHHHHHTTCSSC-CS-SCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhh-hh-hhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------
Confidence 34445555665554432111 00 011233456788999999999999999999999999999998843
Q ss_pred CcEEEEcCC-HHHHHHHHHHHHHHHhhcccC
Q 007844 415 DVVIQISGE-YKNVQNALSEVVGRLRHNLKS 444 (587)
Q Consensus 415 ~r~V~I~G~-~~~V~~A~~~I~~~Lr~~~~~ 444 (587)
+..|.|.+. .+++++|+.+|...+.+..+.
T Consensus 608 dG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG 638 (726)
T 4aid_A 608 DGVVKVSASDGAKIKAAIDWIKSITDEAEVG 638 (726)
T ss_dssp ------CCSCHHHHHHHHHC-----------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 455677666 778999999999887765433
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.94 E-value=0.004 Score=61.15 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=63.4
Q ss_pred CccceeccCCChHHHHH-HhHhCceEEEeCCCCCCCceEEEEecCCch-hhhhhhccccccccCCCccHHHHHHHHHHHH
Q 007844 34 PVVGGLIGRSGSIISSI-RRDTKCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQEAVIRVFER 111 (587)
Q Consensus 34 ~~vG~IIGk~G~~Ik~I-reeTga~I~V~~~~~~~~eRvI~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~Al~~i~~~ 111 (587)
+-+|+.||++|++|+.| ++-.|-+|+|-....+ ++. +.+| ++||.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~~fi~na-------------lsPA~--------- 172 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PARFVANA-------------LSPAK--------- 172 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HHHHHHHH-------------TTTSC---------
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-----------HHHHHHhc-------------cCCcc---------
Confidence 55899999999999999 6666888887543211 100 0000 11110
Q ss_pred HHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCC
Q 007844 112 MWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (587)
Q Consensus 112 i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~ 167 (587)
+......+ ...-.+.+.||..+.+.-|||+|.+++.-..-||.+|.|...
T Consensus 173 V~~V~i~~------~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 173 VVSVSVID------QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp CSEEEEEE------TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred eEEEEEEc------CCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 00000000 012468899999999999999999999999999999999763
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.81 E-value=0.0051 Score=63.74 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=65.0
Q ss_pred CccceeccCCChHHHHHHhHh-CceEEEeCCCCCCCceEEEEecCCch-hhhhhhccccccccCCCccHHHHHHHHHHHH
Q 007844 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQEAVIRVFER 111 (587)
Q Consensus 34 ~~vG~IIGk~G~~Ik~IreeT-ga~I~V~~~~~~~~eRvI~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~Al~~i~~~ 111 (587)
+-+|+.||++|++|+.|.++. |-+|+|-....+ ++. +.+| ++||.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~~fi~na-------------lsPA~--------- 295 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PARFVANA-------------LSPAK--------- 295 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HHHHHHHH-------------TTTSC---------
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-----------HHHHHHHh-------------cCCcc---------
Confidence 568999999999999999999 888887543211 000 0000 11110
Q ss_pred HHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCC
Q 007844 112 MWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (587)
Q Consensus 112 i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~ 167 (587)
+..... . ......+.+.||..+.+..|||+|.+++....-||.+|.|...
T Consensus 296 V~~V~~-~-----~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 296 VVSVSV-I-----DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp CSEEEE-E-----ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred eeEEEE-E-----cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 000000 0 0114468899999999999999999999999999999999763
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.69 E-value=0.037 Score=54.32 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=65.3
Q ss_pred ccccccccccchhhHhh-hhhcCceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHH--hhhhcccccCCCCCC
Q 007844 283 WTASGIIGKRGAIVRSL-QNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEGQQGFSSG 359 (587)
Q Consensus 283 ~~vG~IIGk~G~~Ik~I-~~~tga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~--~~v~e~~~~~g~~~g 359 (587)
+-+|.-||++|.+|+.| ++-.|-+|.|-.-..+ ++ .-+...+ .++.....
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------------p~-~fi~nalsPA~V~~V~i------- 178 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------------PA-RFVANALSPAKVVSVSV------- 178 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------------HH-HHHHHHTTTSCCSEEEE-------
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-------------------HH-HHHHhccCCcceEEEEE-------
Confidence 56899999999999999 6667888877643211 11 0111100 00100000
Q ss_pred CCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCc
Q 007844 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (587)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~ 406 (587)
......++.+.||.++.+.-|||+|.+++.-.+.||.+|.|...++
T Consensus 179 -~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 179 -IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp -EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred -EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 0012347889999999999999999999999999999999987554
No 80
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.15 E-value=0.031 Score=57.65 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=63.3
Q ss_pred CccceeccCCChHHHHHHhHh-CceEEEeCCCCCCCceEEEEecCCch-hhhhhhccccccccCCCccHHHHHHHHHHHH
Q 007844 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQEAVIRVFER 111 (587)
Q Consensus 34 ~~vG~IIGk~G~~Ik~IreeT-ga~I~V~~~~~~~~eRvI~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~Al~~i~~~ 111 (587)
+-+|+.||.+|+.|+.+.++. |-+|+|-....+ ++. +.+| ++|| +
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-----------~~~fi~na-------------l~Pa-----~---- 291 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-----------PKQLIANA-------------LAPA-----T---- 291 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-----------HHHHHHHH-------------TCSS-----C----
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-----------HHHHHHHh-------------cCcc-----E----
Confidence 568999999999999999999 667776433111 000 0000 0111 0
Q ss_pred HHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecC
Q 007844 112 MWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLP 166 (587)
Q Consensus 112 i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~ 166 (587)
+...... ....-.+.+.||..+.+.-|||+|.+++.-..-||.+|.|..
T Consensus 292 v~~v~~~------d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 292 VIEVEIL------DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp CSEEEEE------ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEEE------cCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 0000000 011446889999999999999999999999999999999965
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.12 E-value=0.054 Score=56.12 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=66.4
Q ss_pred ccccccccccchhhHhhhhhc-CceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHH--hhhhcccccCCCCCC
Q 007844 283 WTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEGQQGFSSG 359 (587)
Q Consensus 283 ~~vG~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~--~~v~e~~~~~g~~~g 359 (587)
+-+|..||++|.+|+.|.++. |-+|.|-.-..+ ++ .-+...+ .++.....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------------p~-~fi~nalsPA~V~~V~~------- 301 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------------PA-RFVANALSPAKVVSVSV------- 301 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------------HH-HHHHHHTTTSCCSEEEE-------
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-------------------HH-HHHHHhcCCcceeEEEE-------
Confidence 568999999999999999998 877776532111 11 0111100 01100000
Q ss_pred CCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCc
Q 007844 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (587)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~ 406 (587)
..+....+.+.||..+.+..|||+|.+++-..+.||.+|.|....+
T Consensus 302 -~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 302 -IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp -EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred -EcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 0012457899999999999999999999999999999999987554
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.62 E-value=0.022 Score=64.59 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEE
Q 007844 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (587)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V 178 (587)
..|.++...++..+..........-..-.+....+-||.+.++.+||++|.+|+.|.+++|+.|.|.. +..|
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------dg~v 601 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------DGTV 601 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC--------CccE
Confidence 34555666666555443322211111122455667889999999999999999999999999998843 4567
Q ss_pred EEeec-HHHHHHHHHHHHHHHh
Q 007844 179 QITGA-TLAVKKALVAVTTCLQ 199 (587)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L~ 199 (587)
.|.+. .+.+.+|..+|..++.
T Consensus 602 ~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 602 KIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------
T ss_pred EEecCCHHHHHHHHHHHHHHhh
Confidence 77665 6777888777776654
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.60 E-value=0.018 Score=65.61 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEE
Q 007844 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (587)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V 178 (587)
..|.++..+++..+....... ..-..-.+....+-||.+.++.+||++|.+|++|.+++|+.|.|.. +..|
T Consensus 569 ~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------dG~v 639 (757)
T 1e3p_A 569 KQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------DGTI 639 (757)
T ss_dssp HHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC--------CceE
Confidence 446666666666655433322 2111122344457799999999999999999999999999998843 4667
Q ss_pred EEeec-HHHHHHHHHHHHHHH
Q 007844 179 QITGA-TLAVKKALVAVTTCL 198 (587)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L 198 (587)
.|+.. .+...+|...|..+.
T Consensus 640 ~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 640 YIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCBSSHHHHCC---------
T ss_pred EEecCCHHHHHHHHHHHHHhc
Confidence 77766 677777776666544
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=91.57 E-value=0.025 Score=64.35 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=21.3
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCC-HHHHHHHHHHHHHHH
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE-YKNVQNALSEVVGRL 438 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~-~~~V~~A~~~I~~~L 438 (587)
......+.||.++++.+||++|.+||+|++.||+.|.|.. +..|.|+.. .+..++|+.+|....
T Consensus 596 ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 596 APRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp SCBCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred CceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3445568899999999999999999999999999998853 355666654 456666766665543
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.29 E-value=0.063 Score=60.83 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred CceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCC-HHHHHHHHHHHHHHHhh
Q 007844 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE-YKNVQNALSEVVGRLRH 440 (587)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~-~~~V~~A~~~I~~~Lr~ 440 (587)
......+.||.++++.+||++|.+|++|.++||+.|.|.. +..|.|.+. .+.+++|+.+|...+.+
T Consensus 558 ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 558 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 4456778999999999999999999999999999997743 355666654 45677787777665544
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.04 E-value=0.24 Score=51.02 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=63.7
Q ss_pred ccccccccccchhhHhhhhhc-CceEEeeCCCCCCCccEEEEEecCCcCCCCChHHHHHHHHH--hhhhcccccCCCCCC
Q 007844 283 WTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEGQQGFSSG 359 (587)
Q Consensus 283 ~~vG~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~er~V~IsG~~~p~~~~~~a~~Av~~i~--~~v~e~~~~~g~~~g 359 (587)
+-+|..||.+|.+|+.|.++. |-+|.+-.-.. .++ .-+...+ .++.....
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~-------------------d~~-~fi~nal~Pa~v~~v~~------- 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSD-------------------DPK-QLIANALAPATVIEVEI------- 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS-------------------SHH-HHHHHHTCSSCCSEEEE-------
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCC-------------------CHH-HHHHHhcCccEEEEEEE-------
Confidence 568999999999999999998 66666543211 111 0111000 01100000
Q ss_pred CCCCCceEEEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCC
Q 007844 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGG 404 (587)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~ 404 (587)
..+...++.+.||..+.+.-|||+|.+++.-.+.||.+|.|...
T Consensus 298 -~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 298 -LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp -EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred -EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 00234578899999999999999999999999999999999753
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=64.05 E-value=2.9 Score=34.51 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=24.8
Q ss_pred EEEEEeccCccceeccCCChHHHHHHhHh
Q 007844 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (587)
Q Consensus 26 ~~riLvP~~~vG~IIGk~G~~Ik~IreeT 54 (587)
-.+|.+...+-|.|||++|+.|++|+++.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 35678888999999999999999988764
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=62.01 E-value=3.8 Score=37.01 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=25.5
Q ss_pred EEEEeccCccceeccCCChHHHHHHhHhCce
Q 007844 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTKCR 57 (587)
Q Consensus 27 ~riLvP~~~vG~IIGk~G~~Ik~IreeTga~ 57 (587)
+.+-+-.+..|.+|||.|.|++.||--+..-
T Consensus 35 i~i~i~ged~glLIGK~G~TL~ALQyL~~~~ 65 (152)
T 2pt7_G 35 LLIDIDGEDSALLIGEKGYRYKALSYLLFNW 65 (152)
T ss_dssp EEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH
T ss_pred EEEEEecCCcceEECCCCcchHHHHHHHHHH
Confidence 4455578899999999999999999887543
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=53.52 E-value=4.6 Score=36.48 Aligned_cols=65 Identities=8% Similarity=-0.027 Sum_probs=41.7
Q ss_pred EEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 130 t~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
++.+-+.....|.||||.|.+++.|+--+. ..+.+. . ...-.+-|.|-.+.-++.+..+...+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~--~~vn~~--~--~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF--NWIHPT--Y--GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH--HHHHHH--H--SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH--HHhhhc--C--CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 455667788999999999999999985442 111110 0 0112334556677777777777777755
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=51.63 E-value=4.5 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=23.5
Q ss_pred EEEEEeecceeeeeeecCchHHHHHHhh
Q 007844 130 YCGLLANTTKIGVVVGKGGRNVTRMRIE 157 (587)
Q Consensus 130 t~rllVp~~~vG~IIGkgG~~Ik~I~~e 157 (587)
.+++.|....-|.|||++|+.|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 3667888888899999999999888754
No 91
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=32.97 E-value=16 Score=35.26 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=25.0
Q ss_pred EEEEeccCccceeccCCChHHHHHHhHhC
Q 007844 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (587)
Q Consensus 27 ~riLvP~~~vG~IIGk~G~~Ik~IreeTg 55 (587)
.+|.+...+-|.|||++|+.|++|+.+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l~ 74 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLVQ 74 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 56778889999999999999999887654
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.57 E-value=19 Score=34.22 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.7
Q ss_pred EEEEeccCccceeccCCChHHHHHHhHh
Q 007844 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (587)
Q Consensus 27 ~riLvP~~~vG~IIGk~G~~Ik~IreeT 54 (587)
.+|.+....-|.|||++|+.|++|+.+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4677778889999999999999987754
No 93
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=31.74 E-value=2.4e+02 Score=23.94 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007844 414 NDVVIQISGEYKNVQNALSEVVGRLRHN 441 (587)
Q Consensus 414 ~~r~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (587)
++-.|.|+|-|++|.+-+..=.++|..-
T Consensus 122 n~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 122 NRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp SEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 3567889999999999888888888753
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=30.85 E-value=22 Score=34.46 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=25.5
Q ss_pred EEEEEeccCccceeccCCChHHHHHHhHhC
Q 007844 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (587)
Q Consensus 26 ~~riLvP~~~vG~IIGk~G~~Ik~IreeTg 55 (587)
-.+|.+....-|.|||++|+.|++|+++..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHHH
Confidence 457778889999999999999999988653
No 95
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.15 E-value=17 Score=34.90 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=25.5
Q ss_pred EEEEEeccCccceeccCCChHHHHHHhHhC
Q 007844 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (587)
Q Consensus 26 ~~riLvP~~~vG~IIGk~G~~Ik~IreeTg 55 (587)
-.+|.+...+-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 356788889999999999999999887654
No 96
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=25.77 E-value=20 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.0
Q ss_pred EEEeccCccceeccCCChHHHHHHhHhCceEE
Q 007844 28 RLVCPTPVVGGLIGRSGSIISSIRRDTKCRIH 59 (587)
Q Consensus 28 riLvP~~~vG~IIGk~G~~Ik~IreeTga~I~ 59 (587)
.|-+.....|.+|||.|.+++.||.-++.-+.
T Consensus 95 ~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 95 NVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 34456778999999999999999999885543
No 97
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=25.26 E-value=19 Score=34.11 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=22.8
Q ss_pred EEEEeccCccceeccCCChHHHHHHhHh
Q 007844 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (587)
Q Consensus 27 ~riLvP~~~vG~IIGk~G~~Ik~IreeT 54 (587)
.+|.+....-|.|||++|+.|++|+++-
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l 90 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4566677888999999999999988654
No 98
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=25.24 E-value=91 Score=23.55 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007844 413 QNDVVIQISGEYKNVQNALSEVVGRLRH 440 (587)
Q Consensus 413 ~~~r~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (587)
.++-.|.|+|-|++|.+-+..=.++|.+
T Consensus 39 gndleiritgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 39 GNDLEIRITGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp SSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEecChHHHHHHHHHHHHHHHH
Confidence 4567899999999999988887888875
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.12 E-value=28 Score=34.59 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=28.8
Q ss_pred ceEEEEEeCc-ccccccccCCCchhHHHHHh--------hCCeEEE
Q 007844 365 AVAVSILVGA-DFVGCLTGSGSSAVSEMEDV--------TGTDIKL 401 (587)
Q Consensus 365 ~~t~~l~VP~-~~vG~IIGkgG~~Ik~I~~~--------TGa~I~i 401 (587)
.+...+.|.. ++-+.|||++|+.||+|... .|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4777888888 68899999999999987544 4666654
No 100
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=24.99 E-value=23 Score=35.22 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=27.3
Q ss_pred ceEEEEEeec-ceeeeeeecCchHHHHHHh--------hhCCeEEe
Q 007844 128 VAYCGLLANT-TKIGVVVGKGGRNVTRMRI--------ESGAKIVM 164 (587)
Q Consensus 128 ~vt~rllVp~-~~vG~IIGkgG~~Ik~I~~--------etGa~I~I 164 (587)
.+...++|.. ++.+.||||+|+.||+|.. -.|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 3566677776 4788999999999998753 35666554
No 101
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.96 E-value=21 Score=34.69 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=25.4
Q ss_pred EEEEEeccCccceeccCCChHHHHHHhHhC
Q 007844 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (587)
Q Consensus 26 ~~riLvP~~~vG~IIGk~G~~Ik~IreeTg 55 (587)
-.+|.+...+-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 456777888999999999999999988754
No 102
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=23.48 E-value=1.1e+02 Score=29.14 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=43.3
Q ss_pred EEEEeCcccccccccCCCchhHHHHHhhCCeEEEcCCCcccccCCCCCcEEEEcCCHHHHHHHHHHH
Q 007844 368 VSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434 (587)
Q Consensus 368 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~V~~A~~~I 434 (587)
.-+.++...+.+++|+++..++.|.+.+++.|-+-. +-.|=|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHH
Confidence 345799999999999999999999999999998843 34566888876554444444
No 103
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=23.11 E-value=21 Score=34.36 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.0
Q ss_pred EEEEeccCccceeccCCChHHHHHHhHh
Q 007844 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (587)
Q Consensus 27 ~riLvP~~~vG~IIGk~G~~Ik~IreeT 54 (587)
.+|.+....-|.|||++|+.|++|+.+.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L 91 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVV 91 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4566677888999999999999987654
No 104
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=22.05 E-value=21 Score=34.32 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=41.2
Q ss_pred EEEEEeecceeeeeeecCchHHHHHHhhhCCeEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007844 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (587)
Q Consensus 130 t~rllVp~~~vG~IIGkgG~~Ik~I~~etGa~I~I~~~p~~~~~~dr~V~I~G~~e~V~~A~~~I~~~L~e 200 (587)
++.+-+.....|.||||.|.+++.||--+..-++-.. .....-++-|.|-.+.-++.+..+...+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~----~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSS----SDYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTC----SSCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcC----CCceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 3455567788999999999999999977653332211 011112344455566666666666555543
No 105
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=21.17 E-value=31 Score=33.35 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=22.5
Q ss_pred EEEeccCccceeccCCChHHHHHHhHh
Q 007844 28 RLVCPTPVVGGLIGRSGSIISSIRRDT 54 (587)
Q Consensus 28 riLvP~~~vG~IIGk~G~~Ik~IreeT 54 (587)
+|.+....-|.|||++|+.|++|+++.
T Consensus 65 ~I~I~tarPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 65 AVTVHVAKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp CCEEEESCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEeCCCcceecCCchHHHHHHHHH
Confidence 356667888999999999999998764
No 106
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=20.96 E-value=26 Score=33.86 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=23.0
Q ss_pred EEEEeecceeeeeeecCchHHHHHHhh
Q 007844 131 CGLLANTTKIGVVVGKGGRNVTRMRIE 157 (587)
Q Consensus 131 ~rllVp~~~vG~IIGkgG~~Ik~I~~e 157 (587)
+++.|....-|.|||++|+.|++|+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 567788888899999999999988744
No 107
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.92 E-value=26 Score=33.22 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=21.9
Q ss_pred EEEEeecceeeeeeecCchHHHHHHh
Q 007844 131 CGLLANTTKIGVVVGKGGRNVTRMRI 156 (587)
Q Consensus 131 ~rllVp~~~vG~IIGkgG~~Ik~I~~ 156 (587)
+++.|....-|.|||++|+.|++|+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHH
Confidence 46777778889999999999998764
Done!