BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007845
         (587 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9PG57|SYP_XYLFA Proline--tRNA ligase OS=Xylella fastidiosa (strain 9a5c) GN=proS
           PE=3 SV=2
          Length = 564

 Score = 38.5 bits (88), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 13/106 (12%)

Query: 430 ERALTNGVLSIQRGTEPGVMIYMLPLGRGDS---KAKSYHGWGTRFSSFWCCYGTGIESF 486
           +RA+  G + I RG E G   ++  LGR  +   KA     +G   +    CYG G+   
Sbjct: 391 DRAVDGGKICIARGIEVG---HVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRI 447

Query: 487 SKLGDSIYFEEEGNVPGLYIIQYISSSLDWKSGNIVLNQKVDPVVS 532
                +   E+  +V G   I + +S   W+    V+N K DPV++
Sbjct: 448 V----AAAIEQNHDVAG---IIWPASIAPWQVAVCVINPKKDPVIT 486


>sp|B2V3Z2|GPDA_CLOBA Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Clostridium
           botulinum (strain Alaska E43 / Type E3) GN=gpsA PE=3
           SV=1
          Length = 330

 Score = 37.4 bits (85), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 173 LSASAHMWASTHNVTLKEKMTAVVS-----ALSECQNKMGSGYLSAFPSEQFDRFEALKP 227
           LS  +H       V LK   T VVS     A SE QN   + +   + +E     E    
Sbjct: 131 LSGPSH----AEEVVLKLPTTLVVSSENMNAASEAQNLFMTSFFRVYTNEDLVGVE---- 182

Query: 228 VWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVE 263
           V      I  + AG+LD   + DNT+A  MT+ M E
Sbjct: 183 VGGAVKNIIALAAGILDGLGYGDNTKAALMTRGMKE 218


>sp|Q22830|OSM1_CAEEL Intraflagellar transport protein osm-1 OS=Caenorhabditis elegans
            GN=osm-1 PE=2 SV=4
          Length = 1737

 Score = 35.4 bits (80), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 68/189 (35%), Gaps = 30/189 (15%)

Query: 384  EFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVL--SIQ 441
            E WSD  R+A T G EN E           + LF W K +      +    +G+L   I 
Sbjct: 1064 EMWSDAYRIAKTEGGENME----------KQVLFMWAKSIGGDAAVKLLNKHGMLMEGID 1113

Query: 442  RGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGIESFSKLGDSIYFEEEGNV 501
               E G       L R  +K         R  +      T +E   +L D+     EGN 
Sbjct: 1114 FACETGAFDLAFDLARIGAK--------DRMGTVHVRLATQLEEEGRLEDASKHYVEGNK 1165

Query: 502  PGLYIIQYISSSLDWKSGNIVLNQKVDPVVSWDPYLRMT--------HTFSSKQVLSAFT 553
            P L +  +I  + DW     V     + ++  D Y            H  +   +L A  
Sbjct: 1166 PELAVEMFIRDN-DWADAERVAKDHCESLLP-DVYTGQARRAIEEGDHLRAETFLLRANK 1223

Query: 554  PESILQYLV 562
            P+ IL+Y +
Sbjct: 1224 PDIILRYFI 1232


>sp|P32812|YGL1_GEOSE Uncharacterized protein in gldA 5'region (Fragment) OS=Geobacillus
           stearothermophilus PE=4 SV=1
          Length = 97

 Score = 33.1 bits (74), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 247 TFADNTQALKMTKWMVEYFYNRVQNVITKYSVE-----RHWNSLNEETGGMNDVLYRL 299
           TFA+  + LK   W+ +  ++RV N+I    +E     + +   N+E  G+++ L RL
Sbjct: 22  TFAEYLEILKEKPWIAQSAHSRVYNMIKDAGIEEINGRKRYKFFNQEIFGLDEALERL 79


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,546,842
Number of Sequences: 539616
Number of extensions: 10048880
Number of successful extensions: 19555
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19554
Number of HSP's gapped (non-prelim): 6
length of query: 587
length of database: 191,569,459
effective HSP length: 123
effective length of query: 464
effective length of database: 125,196,691
effective search space: 58091264624
effective search space used: 58091264624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)