Query 007845
Match_columns 587
No_of_seqs 204 out of 743
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 16:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3533 Uncharacterized protei 100.0 3E-104 6E-109 835.2 29.0 430 102-569 9-444 (589)
2 PF07944 DUF1680: Putative gly 100.0 1E-100 2E-105 850.6 38.0 438 109-568 1-458 (520)
3 cd00249 AGE AGE domain; N-acyl 99.0 4.7E-08 1E-12 104.5 24.4 271 169-454 55-352 (384)
4 cd00249 AGE AGE domain; N-acyl 98.6 1.9E-06 4.2E-11 92.1 18.0 248 192-454 16-289 (384)
5 PF03663 Glyco_hydro_76: Glyco 98.2 1.5E-05 3.3E-10 86.0 14.2 186 169-372 38-256 (370)
6 PF03663 Glyco_hydro_76: Glyco 98.1 1.9E-05 4.1E-10 85.2 12.7 194 233-436 36-253 (370)
7 COG1331 Highly conserved prote 98.1 0.0002 4.4E-09 81.2 19.5 259 170-442 276-575 (667)
8 PF07944 DUF1680: Putative gly 98.0 0.00012 2.6E-09 82.4 15.9 189 234-437 61-267 (520)
9 cd04791 LanC_SerThrkinase Lant 98.0 0.00038 8.1E-09 72.7 17.6 174 238-442 88-278 (321)
10 COG3533 Uncharacterized protei 97.9 3.4E-05 7.3E-10 84.2 8.7 170 166-366 127-323 (589)
11 cd04791 LanC_SerThrkinase Lant 97.8 0.00046 9.9E-09 72.0 15.4 186 172-373 88-277 (321)
12 PF07470 Glyco_hydro_88: Glyco 97.6 0.0033 7.1E-08 66.7 18.8 241 169-446 27-293 (336)
13 PF07221 GlcNAc_2-epim: N-acyl 97.4 0.0029 6.4E-08 67.2 14.4 192 170-373 84-311 (346)
14 PF07221 GlcNAc_2-epim: N-acyl 97.3 0.0039 8.5E-08 66.2 14.4 232 169-455 23-263 (346)
15 cd04434 LanC_like LanC-like pr 97.0 0.064 1.4E-06 55.7 18.9 219 177-439 60-300 (343)
16 COG1331 Highly conserved prote 96.8 0.031 6.7E-07 64.0 15.4 136 170-317 414-565 (667)
17 cd04792 LanM-like LanM-like pr 96.7 0.081 1.8E-06 62.9 19.5 214 177-435 551-778 (825)
18 PF06662 C5-epim_C: D-glucuron 96.6 0.012 2.6E-07 58.0 9.8 131 294-431 37-186 (189)
19 COG4225 Predicted unsaturated 96.6 0.007 1.5E-07 63.9 8.5 128 227-370 32-168 (357)
20 PTZ00470 glycoside hydrolase f 96.2 0.061 1.3E-06 60.8 13.7 79 237-316 159-251 (522)
21 cd04792 LanM-like LanM-like pr 96.2 0.25 5.5E-06 58.8 19.5 226 169-436 489-734 (825)
22 cd04434 LanC_like LanC-like pr 96.2 0.49 1.1E-05 49.1 19.2 227 177-438 12-253 (343)
23 PF07470 Glyco_hydro_88: Glyco 96.1 0.029 6.2E-07 59.5 9.9 136 292-448 30-167 (336)
24 cd04794 euk_LANCL eukaryotic L 95.6 0.34 7.4E-06 51.6 15.4 197 169-372 103-305 (343)
25 COG4403 LcnDR2 Lantibiotic mod 95.4 0.1 2.2E-06 61.2 11.2 119 169-315 698-821 (963)
26 PF00759 Glyco_hydro_9: Glycos 95.0 0.5 1.1E-05 52.0 14.7 127 185-318 93-246 (444)
27 COG4225 Predicted unsaturated 94.9 0.081 1.8E-06 56.1 7.7 140 289-451 38-180 (357)
28 PF01532 Glyco_hydro_47: Glyco 94.8 0.25 5.3E-06 55.0 11.8 205 237-443 81-324 (452)
29 PTZ00470 glycoside hydrolase f 94.8 1.4 3E-05 50.1 17.6 260 168-439 156-455 (522)
30 cd04793 LanC LanC is the cycla 94.6 1.7 3.6E-05 46.9 17.2 185 184-372 120-328 (382)
31 PF01532 Glyco_hydro_47: Glyco 94.4 0.19 4.1E-06 56.0 9.6 264 168-439 78-389 (452)
32 COG2942 N-acyl-D-glucosamine 2 94.2 1 2.3E-05 48.8 14.3 183 187-380 138-347 (388)
33 PF06662 C5-epim_C: D-glucuron 94.0 0.39 8.5E-06 47.4 9.8 139 156-316 25-188 (189)
34 cd04794 euk_LANCL eukaryotic L 94.0 0.64 1.4E-05 49.5 12.3 125 178-317 176-300 (343)
35 KOG2787 Lanthionine synthetase 92.0 0.85 1.9E-05 48.2 9.3 127 169-317 220-356 (403)
36 KOG2244 Highly conserved prote 91.7 0.95 2.1E-05 50.8 9.6 140 170-316 508-672 (786)
37 PF06917 Pectate_lyase_2: Peri 89.9 0.57 1.2E-05 52.1 6.0 73 236-315 387-465 (557)
38 PLN02266 endoglucanase 89.7 4.7 0.0001 45.7 13.2 126 184-315 128-280 (510)
39 COG4403 LcnDR2 Lantibiotic mod 89.2 6.1 0.00013 47.0 13.8 160 178-366 658-822 (963)
40 PLN02175 endoglucanase 89.0 16 0.00035 41.3 16.6 169 187-371 109-309 (484)
41 PLN02909 Endoglucanase 88.7 6.5 0.00014 44.4 13.3 121 184-314 118-264 (486)
42 cd04793 LanC LanC is the cycla 87.3 4.4 9.5E-05 43.7 10.7 146 167-317 172-323 (382)
43 PLN02345 endoglucanase 86.6 5.3 0.00012 44.8 11.0 122 185-313 81-228 (469)
44 PLN00119 endoglucanase 86.0 9.9 0.00021 43.0 12.8 123 185-315 116-265 (489)
45 PLN02308 endoglucanase 85.8 5.6 0.00012 44.9 10.8 123 186-314 112-261 (492)
46 PLN02613 endoglucanase 85.4 5.8 0.00013 44.9 10.6 121 184-315 110-257 (498)
47 PLN03009 cellulase 85.1 8 0.00017 43.8 11.6 128 184-314 111-264 (495)
48 PLN02340 endoglucanase 84.7 8.7 0.00019 44.6 11.8 125 184-315 114-264 (614)
49 PF05147 LANC_like: Lanthionin 83.3 2.2 4.7E-05 44.8 5.9 180 182-372 121-309 (355)
50 PLN02420 endoglucanase 82.3 12 0.00026 42.7 11.5 163 140-315 68-276 (525)
51 PLN02171 endoglucanase 82.2 16 0.00034 42.7 12.6 125 185-315 115-265 (629)
52 PF05147 LANC_like: Lanthionin 81.1 5 0.00011 42.0 7.7 134 169-316 165-303 (355)
53 PF13243 Prenyltrans_1: Prenyl 78.2 2.5 5.4E-05 36.8 3.6 78 172-268 28-105 (109)
54 COG2942 N-acyl-D-glucosamine 2 77.7 1.2E+02 0.0025 33.5 21.7 262 139-455 21-290 (388)
55 KOG2244 Highly conserved prote 77.2 1.4E+02 0.0031 34.2 18.0 243 103-370 386-676 (786)
56 TIGR02474 pec_lyase pectate ly 75.3 23 0.00049 37.5 10.2 127 295-433 52-212 (290)
57 PF09492 Pec_lyase: Pectic aci 73.7 6.6 0.00014 41.4 5.8 130 295-433 47-207 (289)
58 TIGR02474 pec_lyase pectate ly 73.2 24 0.00051 37.3 9.8 89 169-268 46-149 (290)
59 PF05592 Bac_rhamnosid: Bacter 69.8 47 0.001 37.2 12.0 129 182-323 164-321 (509)
60 KOG2787 Lanthionine synthetase 69.3 22 0.00048 38.0 8.4 114 253-373 242-362 (403)
61 PF09492 Pec_lyase: Pectic aci 66.7 31 0.00067 36.5 8.9 90 169-268 41-144 (289)
62 KOG2204 Mannosyl-oligosacchari 64.6 94 0.002 35.6 12.5 184 181-382 344-571 (625)
63 KOG2431 1, 2-alpha-mannosidase 64.5 9.7 0.00021 41.9 4.8 79 237-316 179-270 (546)
64 PF06917 Pectate_lyase_2: Peri 61.1 15 0.00032 41.3 5.6 85 295-380 392-479 (557)
65 cd02889 SQCY Squalene cyclase 58.3 69 0.0015 33.6 10.1 98 169-268 94-203 (348)
66 PF00759 Glyco_hydro_9: Glycos 55.8 79 0.0017 34.8 10.4 188 170-378 157-371 (444)
67 KOG2430 Glycosyl hydrolase, fa 53.5 1.3E+02 0.0028 32.6 10.7 182 233-435 185-390 (587)
68 KOG2430 Glycosyl hydrolase, fa 53.4 85 0.0018 33.9 9.4 95 170-270 188-285 (587)
69 PF08139 LPAM_1: Prokaryotic m 52.0 7.2 0.00016 26.1 0.8 19 1-19 7-25 (25)
70 KOG2429 Glycosyl hydrolase, fa 49.9 1.6E+02 0.0035 33.8 11.3 158 138-317 228-401 (622)
71 PF05426 Alginate_lyase: Algin 49.0 47 0.001 33.8 6.7 45 336-380 165-210 (272)
72 PF02011 Glyco_hydro_48: Glyco 48.2 46 0.001 38.0 6.8 93 173-269 413-524 (619)
73 PF13249 Prenyltrans_2: Prenyl 46.9 70 0.0015 27.5 6.7 60 192-267 42-103 (113)
74 cd02892 SQCY_1 Squalene cyclas 45.5 1.4E+02 0.0029 35.0 10.6 57 153-215 358-423 (634)
75 TIGR01787 squalene_cyclas squa 43.3 1.5E+02 0.0032 34.7 10.3 81 184-268 382-472 (621)
76 PF13243 Prenyltrans_1: Prenyl 42.8 6 0.00013 34.4 -0.9 59 192-269 1-59 (109)
77 TIGR01577 oligosac_amyl oligos 41.0 2.5E+02 0.0055 32.6 11.8 125 181-316 308-450 (616)
78 PLN00119 endoglucanase 39.6 1E+02 0.0022 35.0 8.0 77 343-432 183-265 (489)
79 KOG0602 Neutral trehalase [Car 39.0 64 0.0014 37.3 6.3 104 154-270 406-517 (600)
80 TIGR01507 hopene_cyclase squal 36.6 1.6E+02 0.0035 34.6 9.3 109 153-268 364-483 (635)
81 PLN02266 endoglucanase 36.1 1.3E+02 0.0029 34.3 8.2 66 356-432 215-280 (510)
82 PLN02345 endoglucanase 36.0 1.3E+02 0.0029 34.0 8.1 62 356-430 167-228 (469)
83 TIGR01535 glucan_glucosid gluc 35.2 5E+02 0.011 30.7 12.9 89 170-268 294-385 (648)
84 PRK11443 lipoprotein; Provisio 34.1 25 0.00055 32.5 1.8 18 1-19 1-18 (124)
85 PF06291 Lambda_Bor: Bor prote 33.6 26 0.00057 31.0 1.7 26 1-26 1-26 (97)
86 PRK10449 heat-inducible protei 32.1 28 0.00061 32.5 1.8 23 1-23 1-23 (140)
87 TIGR03463 osq_cycl 2,3-oxidosq 31.9 5.1E+02 0.011 30.4 12.4 114 153-268 357-489 (634)
88 KOG2431 1, 2-alpha-mannosidase 31.9 1E+02 0.0022 34.3 6.0 111 340-455 178-292 (546)
89 PLN02171 endoglucanase 29.7 2E+02 0.0044 33.8 8.5 79 342-432 181-265 (629)
90 PLN02340 endoglucanase 28.1 2.1E+02 0.0046 33.5 8.3 64 356-432 201-264 (614)
91 PF03750 DUF310: Protein of un 25.4 1.3E+02 0.0029 27.3 4.9 18 235-252 101-118 (119)
92 KOG2429 Glycosyl hydrolase, fa 25.1 2.1E+02 0.0046 33.0 7.2 197 237-434 124-401 (622)
93 cd02894 GGTase-II Geranylgeran 23.7 3.4E+02 0.0073 28.2 8.3 27 186-214 96-122 (287)
94 cd02892 SQCY_1 Squalene cyclas 23.6 2.7E+02 0.0058 32.6 8.2 82 169-268 453-537 (634)
95 PLN02909 Endoglucanase 23.3 2.6E+02 0.0057 31.8 7.7 60 356-431 205-264 (486)
96 TIGR03463 osq_cycl 2,3-oxidosq 22.8 3.5E+02 0.0075 31.8 8.9 82 169-268 453-537 (634)
97 PF13249 Prenyltrans_2: Prenyl 22.2 82 0.0018 27.1 2.9 40 169-211 72-111 (113)
98 TIGR03515 GldC gliding motilit 21.7 1.9E+02 0.0041 26.1 4.9 34 236-269 70-104 (108)
99 PLN02613 endoglucanase 21.7 2.9E+02 0.0063 31.5 7.7 75 342-432 177-257 (498)
100 TIGR01507 hopene_cyclase squal 21.1 3.2E+02 0.0068 32.1 8.1 77 169-268 454-531 (635)
101 PLN03012 Camelliol C synthase 20.5 1.4E+03 0.03 27.7 13.1 98 169-268 488-602 (759)
No 1
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=2.9e-104 Score=835.18 Aligned_cols=430 Identities=25% Similarity=0.377 Sum_probs=398.0
Q ss_pred ccccCCCCeEeCCCccchHHHHHHHHHHHhcCcchhhHhHHHhcCCCCCCCCCCCccCCCcCcccccchhHHHHHHHHHH
Q 007845 102 LKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWA 181 (587)
Q Consensus 102 l~~~~l~~V~l~~~~~~~~~~~~~~~~ll~~~~drll~nFr~~AGl~~~g~~~ggWe~~d~~lrGh~~gkwLeA~a~~~a 181 (587)
++|+++++|.+. +|| ..++++++++++|+|+++|-.+++++.+...++||+.. .++||++||||||+|++++
T Consensus 9 ~r~v~v~~~~~~--~~q----g~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q--~f~dsdlgkwlea~A~~l~ 80 (589)
T COG3533 9 LRPVTVKDVIFG--QFQ----GKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQ--MFWDSDLGKWLEAAAYSLA 80 (589)
T ss_pred cccCCcCchhcc--ccc----cccceeEEecCHHHHHhHhhhccCCCccCcccccceee--eeccccHHHHHHHHHHHHh
Confidence 777777777764 454 55667799999999999999999999888889999954 4889999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhhccCCCcccccC-----CchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHH
Q 007845 182 STHNVTLKEKMTAVVSALSECQNKMGSGYLSAF-----PSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALK 256 (587)
Q Consensus 182 ~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~-----p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~ 256 (587)
.++|++|++++|++|+.++++|+ +|||||++ |+++|++++.. +++||.|||++|+||+|++||++++|+
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~----HelY~aghLieg~va~~qaTGkr~lld 154 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPN----HELYCAGHLIEGGVAAHQATGKRRLLD 154 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccc----hHHHHhHHHHhhhhHHHHhhCcchHHH
Confidence 99999999999999999999999 99999997 78899999765 589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccccccchhhhhcCCCCCCCcc
Q 007845 257 MTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHA 336 (587)
Q Consensus 257 va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~~d~l~~~HA 336 (587)
|++|+|||+.+.|++..+ +....++||+|+++|++||++|||+|||+||++|.+.+..+|++.+.+.+.++||
T Consensus 155 V~~rlADhi~tvfgp~~~-------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHA 227 (589)
T COG3533 155 VVCRLADHIATVFGPEED-------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHA 227 (589)
T ss_pred HHHHHHHhhhhhcCcccc-------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhH
Confidence 999999999999998532 2345689999999999999999999999999999999999999988888889999
Q ss_pred cchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccCCC-CCCCCCCCcccccCCCCcccchhhhHHHHHHHH
Q 007845 337 NTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSA-GEFWSDPKRLASTLGTENEESCTTYNMLKVSRH 415 (587)
Q Consensus 337 n~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~-~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~ 415 (587)
|++||+++|+|++|+++||+.+++++++||++|+++|+|||||+|+ +|+|+++|+||+. +.|+|||||||||||++|
T Consensus 228 vr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn~--~~yAEtCas~~l~~~a~R 305 (589)
T COG3533 228 VRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPNR--TAYAETCASYNLLKLARR 305 (589)
T ss_pred HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCccc--chHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 6999999999875 589999999999999999
Q ss_pred HHhccCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCCCCCCcccccCCCCCCccCccccCCCcccchhhhhccceee
Q 007845 416 LFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGIESFSKLGDSIYF 495 (587)
Q Consensus 416 Lf~~tgd~~YaD~~EraLYN~iLa~~s~~d~g~~~Y~nPL~~g~~k~~~~~~~~~~~~~~~CC~gn~~r~~akl~~~iY~ 495 (587)
||.+.+|++|||+|||+|||++|++|++ |+|+|||||||+.++.+ .+++|++|||||||++|+++|+++|||.
T Consensus 306 ml~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~grh------~r~~w~~c~CCppn~ar~~as~g~yiY~ 378 (589)
T COG3533 306 MLGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGRH------SRQKWFSCWCCPPNGARSVASIGDYIYT 378 (589)
T ss_pred HhccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCCc------cccccccCCCCCCcHhhhhhhccceEEc
Confidence 9999999999999999999999999999 99999999999876532 2678999999999999999999999999
Q ss_pred eecCCCCcEEEEEeeCcEEEeeeccEEEEEEeCCCCCCCCceeEEEEEecCCcccccCchhhhhhhhccceEEE
Q 007845 496 EEEGNVPGLYIIQYISSSLDWKSGNIVLNQKVDPVVSWDPYLRMTHTFSSKQVLSAFTPESILQYLVLDKYYLI 569 (587)
Q Consensus 496 ~~~d~~~gLyVnLYipStl~~~~~~V~I~q~T~YP~~~d~~~~V~itv~~~~~~~~F~l~~~~~~~~~~~~~~~ 569 (587)
..+ ++||||||+.|+++.+..+|.|+|+|+|||+| +|+|||.+. .+..|+|-.++++|.-+.++.|
T Consensus 379 ~~~---d~lyvnLy~~S~~~l~~~~v~irqet~yPw~g----~v~ltv~~~-~p~~~tlaLRlP~W~a~~tl~v 444 (589)
T COG3533 379 RAD---DALYVNLYIASTADLPGDDVQIRQETNYPWSG----QVKLTVERA-QPVLFTLALRLPAWCAAPTLRV 444 (589)
T ss_pred cCC---CEEEEEEeecccccccccceEEEeccCCCCcC----eeEEEEecC-CCceEEEEEecccccCCcEEEE
Confidence 987 69999999999999998889999999999999 999999997 9999999999999998666544
No 2
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1e-100 Score=850.64 Aligned_cols=438 Identities=37% Similarity=0.583 Sum_probs=402.1
Q ss_pred CeEeCCCccchHHHHHHHHHHHhcCcchhhHhHHHhcCCCCCCCCCCCcc--CCCcCcccccchhHHHHHHHHHHhcCCh
Q 007845 109 DVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWE--DPTCELRGHFVGHYLSASAHMWASTHNV 186 (587)
Q Consensus 109 ~V~l~~~~~~~~~~~~~~~~ll~~~~drll~nFr~~AGl~~~g~~~ggWe--~~d~~lrGh~~gkwLeA~a~~~a~t~D~ 186 (587)
+|+|+| +||+++|++++++++++++|+|+++||..||+++++.++|||+ +++..++||++||||||+|++++.++|+
T Consensus 1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 699996 8999999999999999999999999999999999888999999 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcc----cchHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007845 187 TLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAP----YYTIHKILAGLLDQYTFADNTQALKMTKWMV 262 (587)
Q Consensus 187 ~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p----~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~a 262 (587)
+|+++++++|+.|++||+ +||||++|++.. ....++.|.| +||+||||+||+|+|++|||+++|++++|+|
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998754 1135567887 9999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccccccchh--hhhcCCCCCCCcccchh
Q 007845 263 EYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGL--LAVQADDISGFHANTHI 340 (587)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~p--la~~~d~l~~~HAn~~i 340 (587)
||+.++...+ +.+....++.+|||||+++|++||++|||++||+||++|++.++++| +..++|.+++.|+|+++
T Consensus 155 d~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 9996555442 23344445667999999999999999999999999999999999898 88999999999988888
Q ss_pred hHHH-------HHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccCCCC---CCCCCCCcccccCCCCcccchhhhHHH
Q 007845 341 PVVI-------GSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAG---EFWSDPKRLASTLGTENEESCTTYNML 410 (587)
Q Consensus 341 p~~~-------G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~~---E~f~~~~~L~~~l~~~~~ETCas~~~~ 410 (587)
|.++ |++++|++|||++|++|++++|++|+++|||+|||+|+. |+|++++.+|+. ..++|||++||||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~--~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNR--LAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcC--CCCccccHHHHHH
Confidence 8776 999999999999999999999999999999999999998 999999998765 4569999999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCCCCCCcccccCCCCCCccCccccCCCcccchhhhhc
Q 007845 411 KVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGIESFSKLG 490 (587)
Q Consensus 411 ~l~~~Lf~~tgd~~YaD~~EraLYN~iLa~~s~~d~g~~~Y~nPL~~g~~k~~~~~~~~~~~~~~~CC~gn~~r~~akl~ 490 (587)
+|+++||++|||++|||+|||++||++||++++ |+++|+|+|||+++..+... ..+++++++||||+||++|++|+|+
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~ 386 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP 386 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999999 89999999999877654321 3577899999999999999999999
Q ss_pred cceeeeecCCCCcEEEEEeeCcEEEeeecc--EEEEEEeCCCCCCCCceeEEEEEecCCcccccCchhhhhhhhccceEE
Q 007845 491 DSIYFEEEGNVPGLYIIQYISSSLDWKSGN--IVLNQKVDPVVSWDPYLRMTHTFSSKQVLSAFTPESILQYLVLDKYYL 568 (587)
Q Consensus 491 ~~iY~~~~d~~~gLyVnLYipStl~~~~~~--V~I~q~T~YP~~~d~~~~V~itv~~~~~~~~F~l~~~~~~~~~~~~~~ 568 (587)
++||++++ ++||||||+||+++|+.++ |+|+|+|+|||++ +|+|+|++. ++.+|+|..++|+|..+..+-
T Consensus 387 ~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~yP~~~----~v~i~v~~~-~~~~f~l~lRIP~Wa~~~~i~ 458 (520)
T PF07944_consen 387 DYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETDYPFEG----TVRITVSPD-KPVPFTLRLRIPSWAKGATIR 458 (520)
T ss_pred hhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecCCCCCC----CEEEEEEcC-CCccEEEEEEccCCCCCcEEE
Confidence 99999997 6999999999999999876 9999999999999 899999987 899999999999998775443
No 3
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.04 E-value=4.7e-08 Score=104.50 Aligned_cols=271 Identities=13% Similarity=0.057 Sum_probs=169.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCC-CcccccCCchhhhhhhhcCCCCcc-cchHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMG-SGYLSAFPSEQFDRFEALKPVWAP-YYTIHKILAGLLDQY 246 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~-DGYL~t~p~~~~~~l~~~~~~W~p-~Y~~hkl~~Glv~~y 246 (587)
.+..|-+.|.++..++|++..+.++..++.|.+.-.... .||+..++.+ +.-. .. .+ +|....++.|+.++|
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~-g~~~-~~----~~~l~~~a~~l~ala~~~ 128 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQD-GRPV-DA----TKDLYSHAFALLAAAQAA 128 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCC-CCCc-cc----ccchHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999998543112 4788776421 1000 01 13 788889999999999
Q ss_pred HHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhh---hccccc--ccCChHHHHHHHHHhcCChHHHHHhhhccc---c
Q 007845 247 TFADNTQALKMTKWMVEYFYNRVQNVITKYSVERH---WNSLNE--ETGGMNDVLYRLYTITQDPKHLLLAHLFDK---P 318 (587)
Q Consensus 247 ~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~---~~~l~~--e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~---~ 318 (587)
++||+++.|+.|++.++++.++|-+..+.. .... +..+.. .+.=+.++|.+||++|||++|++.|+.+.+ .
T Consensus 129 ~at~d~~~l~~A~~~~~~l~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~ 207 (384)
T cd00249 129 KVGGDPEARALAEETIDLLERRFWEDHPGA-FDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILD 207 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhccCCCcc-cCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873100100 0000 111111 010012689999999999999999976532 1
Q ss_pred ccchh----hhhc--CC--CCC---CCcccc--hhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCcee-eccCCCCC
Q 007845 319 CFLGL----LAVQ--AD--DIS---GFHANT--HIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYA-TGGTSAGE 384 (587)
Q Consensus 319 ~~~~p----la~~--~d--~l~---~~HAn~--~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~-TGG~g~~E 384 (587)
.|.++ +... .+ .++ +...+- +.-.+.++..+++++||+.|++.++++|+.+.++-.=. +||+ .+
T Consensus 208 ~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~--~~ 285 (384)
T cd00249 208 RFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGL--YY 285 (384)
T ss_pred HhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCE--EE
Confidence 12111 1000 00 010 111100 12344566788999999999999999999988654212 2332 12
Q ss_pred CCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHH---HhhhhhccCCCCCCCeEEEecC
Q 007845 385 FWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA---LTNGVLSIQRGTEPGVMIYMLP 454 (587)
Q Consensus 385 ~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~Era---LYN~iLa~~s~~d~g~~~Y~nP 454 (587)
.+.++...+ ...+.-.....++++..-.|.++|||.+|.+.++++ +++..+ ++..|+-+.+.++
T Consensus 286 ~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~---d~~~G~w~~~~~~ 352 (384)
T cd00249 286 SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFI---DPEYGLWFGYLDA 352 (384)
T ss_pred eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC---CCCCCcceeeECC
Confidence 111111111 123444455677888888899999999999999887 444444 4422445555554
No 4
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.59 E-value=1.9e-06 Score=92.11 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhh-ccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhh
Q 007845 192 MTAVVSALSECQ-NKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQ 270 (587)
Q Consensus 192 ~d~~Vd~l~~~Q-~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~ 270 (587)
++.+++.+.... .....||+.....+ ..-.... -..|...-++-++..+|+++|+++.++.|++.++++.+.+.
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~-g~~~~~~----k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~ 90 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRD-GQPFDTD----RRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGR 90 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCC-CCCCCCC----CeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCc
Confidence 456666666532 11135676654221 0000011 23667777888999999999999999999999999998764
Q ss_pred hhcccchhhhhhcccc-c-----------ccCChHHHHHHHHHhcCChHHHHHhhhccc---cccc-------hhhhhcC
Q 007845 271 NVITKYSVERHWNSLN-E-----------ETGGMNDVLYRLYTITQDPKHLLLAHLFDK---PCFL-------GLLAVQA 328 (587)
Q Consensus 271 ~~~~~~~~~~~~~~l~-~-----------e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~---~~~~-------~pla~~~ 328 (587)
... ...+...+. . ++.=+..+|.++|++|||++||++|+...+ ..|. .......
T Consensus 91 d~~----~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~ 166 (384)
T cd00249 91 DPD----HGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT 166 (384)
T ss_pred CCC----CCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC
Confidence 311 011111111 0 000111588999999999999999966522 2221 1111111
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCc-eeeccCCCCCCCCCCCcccccCCCCcccchhhh
Q 007845 329 DDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHG-YATGGTSAGEFWSDPKRLASTLGTENEESCTTY 407 (587)
Q Consensus 329 d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~-y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~ 407 (587)
...++ .|.+.-.+.++..++++|||+.|++.++.+++.+.++-. ...|++ .|.+..+..+.........+.-...
T Consensus 167 ~~~~~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~--~e~~~~~~~~~~~~~~~~~~Pgh~~ 242 (384)
T cd00249 167 PPYRG--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVV--REHFDEDWNPYNGDKGRHQEPGHQF 242 (384)
T ss_pred CCCCC--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeE--EEEECCCCCCCcCcCCCcCCCchHH
Confidence 22233 466666788899999999999999999999999886543 234554 2665433221110011112222234
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHhhhhhc-cCCCCCCCeEEE-ecC
Q 007845 408 NMLKVSRHLFRWTKEMVYADYYERALTNGVLS-IQRGTEPGVMIY-MLP 454 (587)
Q Consensus 408 ~~~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa-~~s~~d~g~~~Y-~nP 454 (587)
+++++.-+|.+++||.+|.+..++. ++.+.. +.++ +.|.++| +.+
T Consensus 243 e~a~~ll~l~~~~~~~~~~~~a~~~-~~~~~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 243 EWAWLLLRIASRSGQAWLIEKARRL-FDLALALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH-HHHHHHhCcCc-cCCCEEEeeEC
Confidence 4666777888899999999999775 566665 5566 5666666 554
No 5
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=98.24 E-value=1.5e-05 Score=85.96 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=108.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCC-ch-hhhhhhhcCCCCcccchHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFP-SE-QFDRFEALKPVWAPYYTIHKILAGLLDQY 246 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p-~~-~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y 246 (587)
.|+.+++++..+..++|++..+.+...+.....-.. +-|..... .. ..+ .+..+..++++.|
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~D-------------D~aw~~la~l~ay 101 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNY---DSYNPSNGSGDRYYD-------------DNAWWALALLRAY 101 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSS--S------BHH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccc---cccccccccccCccC-------------hHHHHHHHHHHHH
Confidence 588899999999999998888888777766554331 11332210 00 112 2344667899999
Q ss_pred HHcCCc-----hHHHHHHHHHHHHHHHhhhhcccchhhhhhcccc----------cccCChHHHHHHHHHhcCChHHHHH
Q 007845 247 TFADNT-----QALKMTKWMVEYFYNRVQNVITKYSVERHWNSLN----------EETGGMNDVLYRLYTITQDPKHLLL 311 (587)
Q Consensus 247 ~~tG~~-----kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~----------~e~GG~~eaL~~LY~~TGd~ryL~l 311 (587)
++||++ +-|+.|++..+++........ .+..-+|..-. +.-|..-....+||++|||++||+.
T Consensus 102 e~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~--cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~ 179 (370)
T PF03663_consen 102 ELTGDQPSDNPKYLDLAKEIFDFLISGWDDTS--CGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDW 179 (370)
T ss_dssp HHH--H-----HHHHHHHHHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HhhCCCcchHHHHHHHHHHHHHHHHHhcCCcc--CCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHH
Confidence 999999 999999999999996654421 11111233100 0111122578899999999999999
Q ss_pred hhhccc---c-ccchhh----hhcCC-------CCCCCcccchhhHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHhc
Q 007845 312 AHLFDK---P-CFLGLL----AVQAD-------DISGFHANTHIPVVIGSQMRYEVTGDP-LYKVTGTFFMDIVNAS 372 (587)
Q Consensus 312 A~~F~~---~-~~~~pl----a~~~d-------~l~~~HAn~~ip~~~G~a~~y~~TGD~-~yl~A~~~~w~~v~~~ 372 (587)
|++..+ . .++++- ..+.+ .-.....+.+--++.|++.+|+.|+|+ .|++.++++-+-+.++
T Consensus 180 A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 180 AKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 988732 1 233221 11110 001112223344568888999999887 9999999999998866
No 6
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=98.15 E-value=1.9e-05 Score=85.18 Aligned_cols=194 Identities=18% Similarity=0.070 Sum_probs=107.1
Q ss_pred chHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhh-hcccchhhhhhcccccccCChHHHHHHHHHhcCCh-----
Q 007845 233 YTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN-VITKYSVERHWNSLNEETGGMNDVLYRLYTITQDP----- 306 (587)
Q Consensus 233 Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~-~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~----- 306 (587)
+..++++.+++++++.+|+++..+++.+........... ..+..... + ......+-.-.+++++|++||++
T Consensus 36 W~~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~DD~aw~~la~l~aye~t~~~~~~~~ 112 (370)
T PF03663_consen 36 WWQAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSG--D-RYYDDNAWWALALLRAYELTGDQPSDNP 112 (370)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S---------BHHHHHHHHHHHHHHHHHH--H-----
T ss_pred ChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccc--c-CccChHHHHHHHHHHHHHhhCCCcchHH
Confidence 467889999999999999999998888776666543211 11100000 0 00000000113899999999999
Q ss_pred HHHHHhhhcccc--ccchhhh--hc----C----CCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCc
Q 007845 307 KHLLLAHLFDKP--CFLGLLA--VQ----A----DDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHG 374 (587)
Q Consensus 307 ryL~lA~~F~~~--~~~~pla--~~----~----d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~ 374 (587)
+||++|+...+. ..++.-. .| . .......+.+.-|.+..++++|++|||+.|++.|++.|+.+.+.++
T Consensus 113 ~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L 192 (370)
T PF03663_consen 113 KYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGL 192 (370)
T ss_dssp HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccee
Confidence 999999887331 1111111 11 0 0001123445677788889999999999999999999999997555
Q ss_pred e-e-eccCCCCCCCCCCCcccccCCCCcccchhhhH---HHHHHHHHHhccCCC-chHHHHHHHHhhh
Q 007845 375 Y-A-TGGTSAGEFWSDPKRLASTLGTENEESCTTYN---MLKVSRHLFRWTKEM-VYADYYERALTNG 436 (587)
Q Consensus 375 y-~-TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~---~~~l~~~Lf~~tgd~-~YaD~~EraLYN~ 436 (587)
+ . +|-+- ........= ....++-=||| +|.-+-.|+++|++. .|.|..++++--.
T Consensus 193 ~d~~~g~v~--Dg~~~~~~c-----~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~ 253 (370)
T PF03663_consen 193 IDPSTGLVY--DGINIDGNC-----TNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAA 253 (370)
T ss_dssp B--TTS-B----EE-TTSSS------B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHH
T ss_pred EECCCcEEE--eCCccCCCC-----CcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 5 1 12221 111100000 01223333444 567788899999776 9999998876444
No 7
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0002 Score=81.24 Aligned_cols=259 Identities=17% Similarity=0.109 Sum_probs=144.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcc---cchHHHHHHHHHHHH
Q 007845 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAP---YYTIHKILAGLLDQY 246 (587)
Q Consensus 170 gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p---~Y~~hkl~~Glv~~y 246 (587)
..-|.+.+.+|..++|+..+..+..+++.|.+-=...+.||.++-..+.+. -+.....|.+ ...+|....-++.+|
T Consensus 276 A~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g-~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f 354 (667)
T COG1331 276 ALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDG-EEGKYYTWSVEELKEVLGEDAELACKYF 354 (667)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcc-cCCCeeecCHHHHHHHhcccHHHHHHHc
Confidence 456788899999999999999999999999877654233444443221111 1111223431 122333333455555
Q ss_pred HHcCCch-----HH----------HHHHHHHHHHH--------HHhhhhcccchhhhhhcccccccCChHHHHHHHHHhc
Q 007845 247 TFADNTQ-----AL----------KMTKWMVEYFY--------NRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTIT 303 (587)
Q Consensus 247 ~~tG~~k-----aL----------~va~r~ad~~~--------~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~T 303 (587)
..+..-. +| +-+.+..+-+. +|..|. -+++ ++..==|=|..+|.+.++++
T Consensus 355 ~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~----~Ddk---vlt~wNglmi~aLa~a~~~~ 427 (667)
T COG1331 355 DVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPS----RDDK---VLTDWNGLMIAALAEAGRVL 427 (667)
T ss_pred ccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCC----CCcc---eeeccHHHHHHHHHHHHHHc
Confidence 5543211 11 11111111111 111110 0111 12211134568999999999
Q ss_pred CChHHHHHhhhccc---cccchh-h----hhcCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCce
Q 007845 304 QDPKHLLLAHLFDK---PCFLGL-L----AVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGY 375 (587)
Q Consensus 304 Gd~ryL~lA~~F~~---~~~~~p-l----a~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y 375 (587)
||++|+++|++-.+ ..++.. + ..|.-...+ -.-.+..++.|+.++|++|+|.+|++.|..+++.++..--=
T Consensus 428 ~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g-~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d 506 (667)
T COG1331 428 GDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAG-LLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWD 506 (667)
T ss_pred CChHHHHHHHHHHHHHHHhhcccchheeeecCcccccc-cchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcC
Confidence 99999999987532 222111 1 111111011 11123457789999999999999999999999999866544
Q ss_pred eeccC----CCCCCCC-CCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHHH--hhhhhccCC
Q 007845 376 ATGGT----SAGEFWS-DPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERAL--TNGVLSIQR 442 (587)
Q Consensus 376 ~TGG~----g~~E~f~-~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraL--YN~iLa~~s 442 (587)
.+||+ +.+|... .+.+. ...-.++=+++... -.-+|-++|||.+|.|..|++| +=+.++...
T Consensus 507 ~~gGf~~t~~~~~~l~ir~~~~----~D~a~~S~na~~~~-~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~~p 575 (667)
T COG1331 507 DEGGFYDTPSDSEDLLIRPKEP----TDGATPSGNAVAAQ-ALLRLSLLTGDARYLEAAEDILQAFAGLAERAP 575 (667)
T ss_pred CCCCcccCCCcccccccCCCCC----CCCCCCCHHHHHHH-HHHHHHhhcCchhHHHHHHHHHHHHHHHHHhCC
Confidence 55552 1223221 11111 11223444444433 4456889999999999999999 766666543
No 8
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.00 E-value=0.00012 Score=82.43 Aligned_cols=189 Identities=17% Similarity=0.145 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhh------hcccc--hhhhhhccccccc---CChHHHHHHHHHh
Q 007845 234 TIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN------VITKY--SVERHWNSLNEET---GGMNDVLYRLYTI 302 (587)
Q Consensus 234 ~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~------~~~~~--~~~~~~~~l~~e~---GG~~eaL~~LY~~ 302 (587)
..+|.++|+...|..++|+++.+.+.++.|.+.+.=.+ ..... .....|..-..|. |-+.++|+.-|+.
T Consensus 61 ~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~ 140 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEA 140 (520)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHH
Confidence 57899999999999999999999999999988865221 10000 1111222200011 1234799999999
Q ss_pred cCChHHHHHhhhccccc-----cchhhhhcCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceee
Q 007845 303 TQDPKHLLLAHLFDKPC-----FLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYAT 377 (587)
Q Consensus 303 TGd~ryL~lA~~F~~~~-----~~~pla~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~T 377 (587)
||+++.|+.|.++.+-- -+++.. .+......| --+..++.++|++|||++|++.|+.|.+.-...-
T Consensus 141 tG~~~~L~v~~k~ad~~~~~~~~~~~~~-~~~~~~~~~----~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~---- 211 (520)
T PF07944_consen 141 TGNERALDVATKLADWVYRRLSRLGPEP-GQKMGYPEH----GGINEALVRLYEITGDERYLDLAEYFVDQRGFDP---- 211 (520)
T ss_pred HCcHHHHHHHHHHHHHHHHHhccCCHHH-hhccccccc----chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----
Confidence 99999999998885421 112211 112222233 2344889999999999999999999988432111
Q ss_pred ccCCCCCCCCCCCcccccCCCCcccchhh--hHHHHHHHHHHhccCCCchHHHHHHHHhhhh
Q 007845 378 GGTSAGEFWSDPKRLASTLGTENEESCTT--YNMLKVSRHLFRWTKEMVYADYYERALTNGV 437 (587)
Q Consensus 378 GG~g~~E~f~~~~~L~~~l~~~~~ETCas--~~~~~l~~~Lf~~tgd~~YaD~~EraLYN~i 437 (587)
.+ .+...+ .++.. .....+..+. .-+..-.-++++.|||.+|.+..|+..-|-+
T Consensus 212 --~~-~~~~~d--~~~~~-~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 212 --YD-LAYGQD--HLPGR-HANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred --Cc-hhhcCc--cCCCc-cccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11 111111 11111 0112223332 2344455688999999999999998876643
No 9
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.96 E-value=0.00038 Score=72.66 Aligned_cols=174 Identities=15% Similarity=0.025 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhh-------cccccccCChHHHHHHHHHhcCChHHHH
Q 007845 238 ILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHW-------NSLNEETGGMNDVLYRLYTITQDPKHLL 310 (587)
Q Consensus 238 l~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~-------~~l~~e~GG~~eaL~~LY~~TGd~ryL~ 310 (587)
++.+++..|+. |+++.++++.+.++++.+...+. +.. ..| .-+.....|+..+|.+||+.|||++|++
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~ 162 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERG--DPA--LLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLE 162 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc--ccc--cccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHH
Confidence 44567788888 99999999999999998764321 000 011 0112244577789999999999999999
Q ss_pred Hhhhcccc---ccchh------hhhc-CCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccC
Q 007845 311 LAHLFDKP---CFLGL------LAVQ-ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGT 380 (587)
Q Consensus 311 lA~~F~~~---~~~~p------la~~-~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~ 380 (587)
.|+...+. .+... .... .......|.+.- +......+++.++|+++++.++...+.+.+..
T Consensus 163 ~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aG--i~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~------- 233 (321)
T cd04791 163 LAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAG--LGLLMLRLEAITGDKRWRDEADGIAHAALSSC------- 233 (321)
T ss_pred HHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh-------
Confidence 99876431 11100 0000 111124455433 23444578999999999999999998887441
Q ss_pred CCCCCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHHHhhhhhccCC
Q 007845 381 SAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQR 442 (587)
Q Consensus 381 g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa~~s 442 (587)
+ ...+=.|.+.+.+.....+.+.++|.+|.+..++.. ..++..-.
T Consensus 234 -----~-----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (321)
T cd04791 234 -----Y-----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIATAD 278 (321)
T ss_pred -----c-----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhccccC
Confidence 0 112345667778888888999999999999998865 66665543
No 10
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=3.4e-05 Score=84.22 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=109.7
Q ss_pred ccc---chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHH-HHHH
Q 007845 166 GHF---VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHK-ILAG 241 (587)
Q Consensus 166 Gh~---~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hk-l~~G 241 (587)
+|+ .||-++|+.-.+..|+-..|...+.++.|.|...=.. ... . .+.||-|- |-.+
T Consensus 127 ~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfgp----------~~~------q----~~g~~gH~eielA 186 (589)
T COG3533 127 NHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFGP----------EED------Q----VPGYCGHPEIELA 186 (589)
T ss_pred chHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCc----------ccc------c----cccccCCCchhHH
Confidence 555 5899999999999999999999999999999765431 100 0 13455433 5568
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH-------HHHHHHHHhcCChHHHHHhhh
Q 007845 242 LLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN-------DVLYRLYTITQDPKHLLLAHL 314 (587)
Q Consensus 242 lv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~-------eaL~~LY~~TGd~ryL~lA~~ 314 (587)
|+.-|+.||++|-|++|++|.++--. .|+ .+-..++ + +||. -.+.+||++|||+.+...+.+
T Consensus 187 l~~Ly~~Tg~~rYL~LA~~Fi~~rg~--~P~-~~rg~e~-------~-~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~ 255 (589)
T COG3533 187 LAELYRLTGDQRYLDLARRFIHQRGV--EPL-AQRGDEL-------E-GGHAVRQIYLYIGAADLAEETGDDSLRQAAEF 255 (589)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhcc--Chh-hcCchhh-------h-hhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999998875432 232 1111111 1 5554 278899999999999999999
Q ss_pred cccc------ccchhh-hhc-----CCCCCCCcccc----hhhHHHHHHHHHHHhCChhHHHHHHHHH
Q 007845 315 FDKP------CFLGLL-AVQ-----ADDISGFHANT----HIPVVIGSQMRYEVTGDPLYKVTGTFFM 366 (587)
Q Consensus 315 F~~~------~~~~pl-a~~-----~d~l~~~HAn~----~ip~~~G~a~~y~~TGD~~yl~A~~~~w 366 (587)
|-+. .+.+-. +.+ .+.+++.-+.. .++++.=..++...++|..|.+.-++.-
T Consensus 256 lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn~~~yAEtCas~~l~~~a~Rml~~~~d~~yaDvmErAL 323 (589)
T COG3533 256 LWQNVTTRQSYITGGNGSSNEHFGPDYDLPNRTAYAETCASYNLLKLARRMLGWGPDSQYADVMERAL 323 (589)
T ss_pred HHHHhhhhheEEecccCCccccCCccccCcccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 8321 111111 110 12333322221 2333333345677889999988777643
No 11
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.82 E-value=0.00046 Score=72.02 Aligned_cols=186 Identities=15% Similarity=0.064 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCC
Q 007845 172 YLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADN 251 (587)
Q Consensus 172 wLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~ 251 (587)
.+-++..++.. +|+++.+.+.++++.|.+.+.. .+.+. .++.. ......|. .-..-++.+|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~-~~~~~-~~~~~-----~~~~~G~~--hG~aGi~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALER-GDPAL-LWPDF-----DRVDHGLL--HGWAGIALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhc-ccccc-ccccC-----CCCCCccc--cCcHHHHHHHHHHHHHHCC
Confidence 44455555666 8999999999999999876542 11111 11100 00000111 1112366788999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhhcccch----hhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccccccchhhhhc
Q 007845 252 TQALKMTKWMVEYFYNRVQNVITKYS----VERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ 327 (587)
Q Consensus 252 ~kaL~va~r~ad~~~~~~~~~~~~~~----~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~ 327 (587)
++.++.+.+..+++.+.+.+...... ..+....+.....|+-.++.+||++|+|++|++.|+...+... ...
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~----~~~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAAL----SSC 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----hhh
Confidence 99999999999999887743111100 0000011223445787899999999999999999988754321 001
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcC
Q 007845 328 ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASH 373 (587)
Q Consensus 328 ~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~ 373 (587)
.....-.|...- +..-+..+++.++|+.+++.+.++-+.+..+.
T Consensus 234 ~~~~~lchG~~G--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (321)
T cd04791 234 YANPGLFSGTAG--LGAHLNDLAAEGDNALYKAAAERLALYLIATA 277 (321)
T ss_pred ccCccccCCcHh--HHHHHHhhcccccChHHHHHHHHHHHHhcccc
Confidence 111123455321 22333466789999999999999998888553
No 12
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.64 E-value=0.0033 Score=66.65 Aligned_cols=241 Identities=13% Similarity=0.012 Sum_probs=140.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~ 248 (587)
-|-++.|+..++..|+|+++.+.+.++++.+...+. . .+. ....+.|.++ +..|+.
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~--------------~d~~~~g~~~---~~~y~~ 82 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DYN--------------LDDHDIGFLL---LDLYER 82 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TTS--------------CCGTTHHHHH---HHHHHH
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----ccC--------------CchhhhHHHH---HHHHHH
Confidence 477788888888999999999999999998887776 2 100 0112444444 778999
Q ss_pred cCCchHHHHHHHHHHHHHHHhhhh-cccchh---hhhhcccccccCChH-HHHHHHHHhcCChHHHHHhhhccc---ccc
Q 007845 249 ADNTQALKMTKWMVEYFYNRVQNV-ITKYSV---ERHWNSLNEETGGMN-DVLYRLYTITQDPKHLLLAHLFDK---PCF 320 (587)
Q Consensus 249 tG~~kaL~va~r~ad~~~~~~~~~-~~~~~~---~~~~~~l~~e~GG~~-eaL~~LY~~TGd~ryL~lA~~F~~---~~~ 320 (587)
||+++.++++.+.++++.+...+. .+.... ...+ ++. ..-.|+ ..|++++..|||++|++.|..-.. ...
T Consensus 83 t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~-~wi-D~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~ 160 (336)
T PF07470_consen 83 TGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQ-VWI-DGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYL 160 (336)
T ss_dssp H-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTE-EET-THHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCc-eee-ccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhc
Confidence 999999999999999888765431 111100 0000 111 111234 689999999999999999955421 112
Q ss_pred chhhh----hcCCC-----C-CCCcccchhhHHHHHHHHHHHhCC-----hhHHHHHHHHHHHHHhcCceeeccCCCCCC
Q 007845 321 LGLLA----VQADD-----I-SGFHANTHIPVVIGSQMRYEVTGD-----PLYKVTGTFFMDIVNASHGYATGGTSAGEF 385 (587)
Q Consensus 321 ~~pla----~~~d~-----l-~~~HAn~~ip~~~G~a~~y~~TGD-----~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~ 385 (587)
++|.. .+.+. - ....+=.+--.+.|++++|+...+ +.+++.++++.+.+.+.+- .+|..-. -
T Consensus 161 ~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~~--~ 237 (336)
T PF07470_consen 161 YDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLWYQ--D 237 (336)
T ss_dssp B-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEBS--B
T ss_pred cCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCcce--e
Confidence 23210 01000 0 001222234467899999988744 6777777777777776544 4443321 1
Q ss_pred CCCCCcccccCCCCcccchhhhHHHHHHHH-H-HhccCCCchHHHHHHHHhhhhhcc-CCCCCC
Q 007845 386 WSDPKRLASTLGTENEESCTTYNMLKVSRH-L-FRWTKEMVYADYYERALTNGVLSI-QRGTEP 446 (587)
Q Consensus 386 f~~~~~L~~~l~~~~~ETCas~~~~~l~~~-L-f~~tgd~~YaD~~EraLYN~iLa~-~s~~d~ 446 (587)
|..|. +..+.||.+|.-...-.-+ + ..+..+.+|.+..||+ +++++.. +++ ||
T Consensus 238 ~~~~~------~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a-~~~l~~~~~~~-dG 293 (336)
T PF07470_consen 238 LDDPD------PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKA-LEALLSNAIDP-DG 293 (336)
T ss_dssp TTTTT------TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHH-HHHHHHCEB-T-TS
T ss_pred cCCCC------CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHHHHhCccCC-CC
Confidence 11111 2367788887533322212 2 2334467899999886 5777777 666 44
No 13
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.39 E-value=0.0029 Score=67.19 Aligned_cols=192 Identities=20% Similarity=0.217 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcc-CCCcccccCCchhhhhhhhcCCCCcc--cchHH-HHHHHHHHH
Q 007845 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNK-MGSGYLSAFPSEQFDRFEALKPVWAP--YYTIH-KILAGLLDQ 245 (587)
Q Consensus 170 gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~-~~DGYL~t~p~~~~~~l~~~~~~W~p--~Y~~h-kl~~Glv~~ 245 (587)
.-.|-|+|. +..++|++..+.+.++++.|.+.-.. ...||...++. .|.+ ..+.| |+++++++.
T Consensus 84 af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-----------~~~~~r~~n~~mhl~eA~l~l 151 (346)
T PF07221_consen 84 AFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDP-----------DWSPPRGQNPHMHLLEAFLAL 151 (346)
T ss_dssp HHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETT-----------TSSCBEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCC-----------ccccCCCCChhHHHHHHHHHH
Confidence 345777777 67889999999999999999877532 12355544332 1222 23443 789999999
Q ss_pred HHHcCCchHHHHHHHHHHHHHHHhhhhcccchhh---hhhccccc-----------ccCChH-HH---HHHHH--HhcCC
Q 007845 246 YTFADNTQALKMTKWMVEYFYNRVQNVITKYSVE---RHWNSLNE-----------ETGGMN-DV---LYRLY--TITQD 305 (587)
Q Consensus 246 y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~---~~~~~l~~-----------e~GG~~-ea---L~~LY--~~TGd 305 (587)
|+++|+++.++.+.++++.+.+.|-........+ .-|..+.. -.+||+ |. |.++. ...++
T Consensus 152 ~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~ 231 (346)
T PF07221_consen 152 YEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGD 231 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999997764311110011 11222110 123665 53 44444 34578
Q ss_pred hHHHHHhhhcccccc---chhhhh------cCCCCCCCcccc---hhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcC
Q 007845 306 PKHLLLAHLFDKPCF---LGLLAV------QADDISGFHANT---HIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASH 373 (587)
Q Consensus 306 ~ryL~lA~~F~~~~~---~~pla~------~~d~l~~~HAn~---~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~ 373 (587)
+++++.|..+....+ +++... ..+..+....-. |.-.+.++..+|+.|||+.|++.+++.|+.+.++-
T Consensus 232 ~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~ 311 (346)
T PF07221_consen 232 PDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHF 311 (346)
T ss_dssp HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhC
Confidence 999998866633211 111000 000000001111 23345677889999999999999999999887554
No 14
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.32 E-value=0.0039 Score=66.21 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=141.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccC-CCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~ 247 (587)
.+..|=..|.++. +++++..+.++.-++.|.+.-... ..||+....+.. -+.. =...|...-++.|+-. +.
T Consensus 23 q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~~~----~~~~Y~~af~l~ala~-~~ 94 (346)
T PF07221_consen 23 QARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PLDP----QKDLYDQAFALLALAE-AR 94 (346)
T ss_dssp HHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EEE------EEHHHHHHHHHHHHH-HH
T ss_pred eHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CCcc----ccchHHHHHHHHHHHH-HH
Confidence 4666777777777 889999999999999999877421 356765542211 0100 0246766666777767 78
Q ss_pred HcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccccccchhhhhc
Q 007845 248 FADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ 327 (587)
Q Consensus 248 ~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~ 327 (587)
+||++++++.|.+..+.+.+++... +.||..+ + +..
T Consensus 95 ~tg~~~~~~~A~~~~~~l~~~~~d~---------------~~g~~~~--------~-----------~~~---------- 130 (346)
T PF07221_consen 95 ATGDPEALELAEQTLEFLERRFWDP---------------EGGGYRE--------S-----------FDP---------- 130 (346)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHTEET---------------TTTEE----------E-----------ETT----------
T ss_pred HhCChhHHHHHHHHHHHHHHHhccc---------------ccCccee--------c-----------cCC----------
Confidence 9999999999999999998876431 1122100 0 000
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcc-ccc-----CCCCcc
Q 007845 328 ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRL-AST-----LGTENE 401 (587)
Q Consensus 328 ~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L-~~~-----l~~~~~ 401 (587)
+..+....|.|+-++.++..+|++|||+.+++.++.+.+.+.++..-...|. ..|+|..+-.. ++. +.....
T Consensus 131 -~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~-~~E~f~~dw~~~~~~~~~d~~~~~~~ 208 (346)
T PF07221_consen 131 -DWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRFADPESGA-LPEFFDRDWNPLPDGSGDDTFRGRIV 208 (346)
T ss_dssp -TSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTE-ETSEEETTSEBETTTTTTHSTTTSSB
T ss_pred -ccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccCe-eeeeeccccccccccccccccccCcc
Confidence 0000013577788888889999999999999999999999997665544444 36877664331 110 000112
Q ss_pred cchhhhHHHHHHHHHH--hccCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCC
Q 007845 402 ESCTTYNMLKVSRHLF--RWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPL 455 (587)
Q Consensus 402 ETCas~~~~~l~~~Lf--~~tgd~~YaD~~EraLYN~iLa~~s~~d~g~~~Y~nPL 455 (587)
|.==.++++.+.-++- ...+++.+.+..++..--++--|.+. ++|.++|..+.
T Consensus 209 ~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~-~~gG~~~~~d~ 263 (346)
T PF07221_consen 209 EPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDR-EGGGLFYSVDR 263 (346)
T ss_dssp -HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBST-TTSSB-SEEET
T ss_pred CCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEec-CCCeEEEEEeC
Confidence 2222344444444434 34467778766655555555557888 77777777654
No 15
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.95 E-value=0.064 Score=55.68 Aligned_cols=219 Identities=16% Similarity=0.084 Sum_probs=134.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhcc----CCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCc
Q 007845 177 AHMWASTHNVTLKEKMTAVVSALSECQNK----MGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNT 252 (587)
Q Consensus 177 a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~----~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~ 252 (587)
..++..++|+++.+.++++++.+.+.-.. ...+++.. ..| ++..|+..|+.++++
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G--------------------~aG-~~~~ll~~~~~~~~~ 118 (343)
T cd04434 60 AALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSG--------------------LAG-LLLALLLLYKTFGEE 118 (343)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeec--------------------hHH-HHHHHHHHHHhcCCc
Confidence 34444579999999999998887764220 01122221 122 345677888889999
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccch-----hhhhh-cccccccCChHHHHHHHHHhcCChHHHHHhhhcccc---c----
Q 007845 253 QALKMTKWMVEYFYNRVQNVITKYS-----VERHW-NSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKP---C---- 319 (587)
Q Consensus 253 kaL~va~r~ad~~~~~~~~~~~~~~-----~~~~~-~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~---~---- 319 (587)
..++.+.+.++++.+...+...... ..... .-+.....|+--+|.++|..+.++.+.++++..... .
T Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (343)
T cd04434 119 IFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDS 198 (343)
T ss_pred CHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCC
Confidence 9999999999999876543211100 00000 001123336778999999999888888877555321 1
Q ss_pred --cchh-hhhc--CCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccc
Q 007845 320 --FLGL-LAVQ--ADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLAS 394 (587)
Q Consensus 320 --~~~p-la~~--~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~ 394 (587)
.+.+ .... .....+.|.. .=++.....+++.++|+.+.+.++...+.+.++....
T Consensus 199 ~~~~~~~~~~~~~~~~~~wChG~--~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 258 (343)
T cd04434 199 GGFWWPSRSNGGNRFLVAWCHGA--PGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLE------------------ 258 (343)
T ss_pred CCCCCCCCCCCCccccceecCCC--hhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc------------------
Confidence 1111 0000 1112244553 2244556678999999999999998888776543211
Q ss_pred cCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHHHhhhhhc
Q 007845 395 TLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS 439 (587)
Q Consensus 395 ~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa 439 (587)
....+=.|...+.+....+|.+.+++.+|.+..++.. +.++.
T Consensus 259 --~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~ 300 (343)
T cd04434 259 --LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLIS 300 (343)
T ss_pred --CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHH
Confidence 0233456677888888899999999999888775554 44443
No 16
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.031 Score=64.03 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccc-cCCchhhhhhhhcCCCCc--ccchHHHHHHHHHHHH
Q 007845 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLS-AFPSEQFDRFEALKPVWA--PYYTIHKILAGLLDQY 246 (587)
Q Consensus 170 gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~-t~p~~~~~~l~~~~~~W~--p~Y~~hkl~~Glv~~y 246 (587)
|-.|+|+|+++..++|++..+.++...+.|.+.+. .| .|. .+- +.....++ +-|- -++.|+++.|
T Consensus 414 glmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~--~~-rl~~~~~-------~G~a~~~g~leDYA--~~i~gll~ly 481 (667)
T COG1331 414 GLMIAALAEAGRVLGDPEYLEAAERAADFILDNLY--VD-RLLRRYR-------GGEAAVAGLLEDYA--FLILGLLALY 481 (667)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc--cc-chheeee-------cCcccccccchhHH--HHHHHHHHHH
Confidence 78899999999999999999999999999999888 44 221 110 00011122 3343 3788999999
Q ss_pred HHcCCchHHHHHHHHHHHHHHHhhhhcccc-h-hhhh-------hccccccc----CChHHHHHHHHHhcCChHHHHHhh
Q 007845 247 TFADNTQALKMTKWMVEYFYNRVQNVITKY-S-VERH-------WNSLNEET----GGMNDVLYRLYTITQDPKHLLLAH 313 (587)
Q Consensus 247 ~~tG~~kaL~va~r~ad~~~~~~~~~~~~~-~-~~~~-------~~~l~~e~----GG~~eaL~~LY~~TGd~ryL~lA~ 313 (587)
++|++.+-|+.|++++|=+...|...-+.. . ...- ......+. +-+..+|++|-.+|||.+|++.|.
T Consensus 482 e~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~ 561 (667)
T COG1331 482 EATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAE 561 (667)
T ss_pred HhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHH
Confidence 999999999999999998887775421110 0 0000 00111111 123369999999999999999998
Q ss_pred hccc
Q 007845 314 LFDK 317 (587)
Q Consensus 314 ~F~~ 317 (587)
....
T Consensus 562 ~~L~ 565 (667)
T COG1331 562 DILQ 565 (667)
T ss_pred HHHH
Confidence 7754
No 17
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.72 E-value=0.081 Score=62.90 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=130.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhccC-CCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHH
Q 007845 177 AHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQAL 255 (587)
Q Consensus 177 a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL 255 (587)
..++..++|+++++.+.++++.+.+..... ..++++. ..| ++.+|+..|+.+++++.+
T Consensus 551 ~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G--------------------~aG-ii~~Ll~l~~~~~~~~~l 609 (825)
T cd04792 551 THLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISG--------------------AAG-LILVLLSLYELFLSERFL 609 (825)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeee--------------------cHH-HHHHHHHHHhccCChHHH
Confidence 344456889999999999999887654310 1122222 122 334678889999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccch-hhh-hhcccccccCChHHHHHHHHHhcCChHHHHHhhhcccc--ccc------hhhh
Q 007845 256 KMTKWMVEYFYNRVQNVITKYS-VER-HWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKP--CFL------GLLA 325 (587)
Q Consensus 256 ~va~r~ad~~~~~~~~~~~~~~-~~~-~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~--~~~------~pla 325 (587)
+++.+.++++.+.......... .+. ...-+..+..|+..+|.+||+.|+|++|++.|+...+. ..+ +|..
T Consensus 610 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~ 689 (825)
T cd04792 610 DLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRK 689 (825)
T ss_pred HHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCc
Confidence 9999999998764322100000 000 00012223347778999999999999999999776431 111 1100
Q ss_pred hc-CCCCCCCcccchhhHHHHHHHHHHH--hCChhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCccc
Q 007845 326 VQ-ADDISGFHANTHIPVVIGSQMRYEV--TGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEE 402 (587)
Q Consensus 326 ~~-~d~l~~~HAn~~ip~~~G~a~~y~~--TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~E 402 (587)
.. .....+.|...- +..+...+++. .+|+.+.+.++..-+.+.+.. +.. ..+=
T Consensus 690 ~~~~~~~~WChG~~G--I~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~------------~~~----------~~sl 745 (825)
T cd04792 690 DGNSFSAAWCHGAPG--ILLARLELLKFNDLDDEELKEEIEIALKTTLKEG------------FGN----------NHSL 745 (825)
T ss_pred CcCCCCCcccCCcHH--HHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhc------------CCC----------CCee
Confidence 00 111235565322 33445567777 688888888877766654321 111 1234
Q ss_pred chhhhHHHHHHHHHHhccCCCchHHHHHHHHhh
Q 007845 403 SCTTYNMLKVSRHLFRWTKEMVYADYYERALTN 435 (587)
Q Consensus 403 TCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN 435 (587)
.|...+.+.....+.+.++|.+|.+.+++.+-+
T Consensus 746 CHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~ 778 (825)
T cd04792 746 CHGDLGNLEILLYAAKAFGDEKLQELANSLAIK 778 (825)
T ss_pred cCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566677777888888999999988887766443
No 18
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=96.64 E-value=0.012 Score=57.97 Aligned_cols=131 Identities=21% Similarity=0.130 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCChHHHHHhhhccccccchhhhhcC------C---------CCCCCc-ccchhhHHHHHHHHHHHhCChh
Q 007845 294 DVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQA------D---------DISGFH-ANTHIPVVIGSQMRYEVTGDPL 357 (587)
Q Consensus 294 eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~~------d---------~l~~~H-An~~ip~~~G~a~~y~~TGD~~ 357 (587)
.+|+|.|++|||++||+.|++..+.-. -|..+|. + ..+..| -|.+|..+.|+-+.+..|++++
T Consensus 37 s~l~RAy~~t~d~~Yl~aA~~al~~f~-~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~~ 115 (189)
T PF06662_consen 37 SVLARAYQLTGDEKYLDAAKKALNSFK-VPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDEE 115 (189)
T ss_pred HHHHHHHHhHCCHHHHHHHHHHHHHhc-ChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCHH
Confidence 599999999999999999988643211 1111110 0 011112 3678999999999999999998
Q ss_pred HHHHHHHHHHHHHhc-CceeeccCCCC--CCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHH
Q 007845 358 YKVTGTFFMDIVNAS-HGYATGGTSAG--EFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYER 431 (587)
Q Consensus 358 yl~A~~~~w~~v~~~-~~y~TGG~g~~--E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~Er 431 (587)
..+.-++..+.+-+. ..|-||+.+.. =|+... ..|+.-+-.|.. .-+ .....|..+|+|+.+.+++||
T Consensus 116 A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~-~~~~~a~~~YH~--lHi---~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 116 AKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLG-NAPNIARWDYHR--LHI---QQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhccccccc-cCcCcCcchHHH--HHH---HHHHHHHHhcCCHHHHHHHHH
Confidence 888888877776554 47788877752 233321 111110012322 223 444669999999999999987
No 19
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.63 E-value=0.007 Score=63.93 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=76.3
Q ss_pred CCCcccchHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCCh
Q 007845 227 PVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDP 306 (587)
Q Consensus 227 ~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ 306 (587)
+.|. |..|-.+.|...+|++||+++.|+.+++.+|+...+=|. +....+. +. .|. .|.-||+.|||+
T Consensus 32 ~~Wd--we~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~--~~~~id~----i~---~g~--~L~~L~e~T~~~ 98 (357)
T COG4225 32 DRWD--WEQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEGGL--PPRNIDH----IA---AGL--TLLPLYEQTGDP 98 (357)
T ss_pred cccc--ccccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCC--Cccchhh----hc---cCc--eeeehhhhhCCH
Confidence 3453 344556778899999999999999999999887765321 1111111 11 122 788899999999
Q ss_pred HHHHHhhhccccccchhhhhcCCCCCCCcccc---hh---hHHHH---HHHHHHHhCChhHHHHHHHHHHHHH
Q 007845 307 KHLLLAHLFDKPCFLGLLAVQADDISGFHANT---HI---PVVIG---SQMRYEVTGDPLYKVTGTFFMDIVN 370 (587)
Q Consensus 307 ryL~lA~~F~~~~~~~pla~~~d~l~~~HAn~---~i---p~~~G---~a~~y~~TGD~~yl~A~~~~w~~v~ 370 (587)
+||++|....+--.-.| .-.+..+ .|-+. ++ -+++| ++++-.++|+++|.+-+...+...+
T Consensus 99 ~Yl~~a~~~a~~l~~~~-Rt~eG~f--~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~ 168 (357)
T COG4225 99 RYLEAAIKLASWLVHEP-RTKEGGF--QHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHE 168 (357)
T ss_pred HHHHHHHHHHHHHhhCc-ccCCCcc--ccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999987743211111 0000000 12211 00 02233 2567789999999887765444433
No 20
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.25 E-value=0.061 Score=60.76 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchh-----------hhhh---cccccccCChHHHHHHHHHh
Q 007845 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSV-----------ERHW---NSLNEETGGMNDVLYRLYTI 302 (587)
Q Consensus 237 kl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~-----------~~~~---~~l~~e~GG~~eaL~~LY~~ 302 (587)
.++-||+.+|.+||++.+|+.|..+||-+...|... ..++. ...| .....|.|.+.--+..|.++
T Consensus 159 R~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTp-tgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~l 237 (522)
T PTZ00470 159 RVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNED-TGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEI 237 (522)
T ss_pred hhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHh
Confidence 467899999999999999999999999999888431 11111 1111 11223667676668889999
Q ss_pred cCChHHHHHhhhcc
Q 007845 303 TQDPKHLLLAHLFD 316 (587)
Q Consensus 303 TGd~ryL~lA~~F~ 316 (587)
|||++|.+.|++..
T Consensus 238 TGd~kY~~~a~~i~ 251 (522)
T PTZ00470 238 TGDPKYAEYVDKVM 251 (522)
T ss_pred hCCHHHHHHHHHHH
Confidence 99999999998773
No 21
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.22 E-value=0.25 Score=58.79 Aligned_cols=226 Identities=16% Similarity=0.175 Sum_probs=129.8
Q ss_pred chhHHHHHHHHHH----hcCChHHHHHHHHHHHHHHHhhccC-----CCcccccCCchhhhhhhhcCCCCcccchHHHHH
Q 007845 169 VGHYLSASAHMWA----STHNVTLKEKMTAVVSALSECQNKM-----GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKIL 239 (587)
Q Consensus 169 ~gkwLeA~a~~~a----~t~D~~L~~k~d~~Vd~l~~~Q~~~-----~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~ 239 (587)
++.=+.|++.+++ .++|+..++.+.++++.+.+.-+.. +.|.++.. .| ++
T Consensus 489 LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~--------------------aG-i~ 547 (825)
T cd04792 489 LYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGL--------------------GG-IL 547 (825)
T ss_pred ccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEech--------------------hH-HH
Confidence 3333556665544 5788889888888888776543310 11222110 11 33
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccccc
Q 007845 240 AGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPC 319 (587)
Q Consensus 240 ~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~ 319 (587)
..+...|+.+++++.++.+.+.++.+.+...+ ......+ .+..|..-+|..||+.|++++++++|....+.-
T Consensus 548 ~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~-------~~~~D~~-~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l 619 (825)
T cd04792 548 YALTHLGKLLKDDRLLNLAKEILDLIDELIEK-------DEKLDFI-SGAAGLILVLLSLYELFLSERFLDLALKCGDHL 619 (825)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-------ccCCCEe-eecHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 35567788899999999999988877653211 0111122 244566678999999999999999997764421
Q ss_pred cchhhhh--------cCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCc
Q 007845 320 FLGLLAV--------QADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKR 391 (587)
Q Consensus 320 ~~~pla~--------~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~ 391 (587)
.-..... ........|...- ++..+..+|+.|+|+.+++++..+++.... + +..++. .|..+..
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~G~aHG~sG--i~~aL~~l~~~~~d~~~~~~a~~~l~~~~~-~-~~~~~~----~w~~~~~ 691 (825)
T cd04792 620 LENASNEDGGIGPAEQPNLTGFAHGASG--IAWALLRLYKVTGDSRYLKLAHKALKYERR-L-FSEEGW----NWPRKDG 691 (825)
T ss_pred HHhhhhccCCcccccccccccccccHHH--HHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-h-cCHhhc----CCCCcCc
Confidence 1000000 0011123465322 344566789999999999999999985432 2 221111 1111110
Q ss_pred ccccCCCCcccchhh-hHHHHHHHHHHhc--cCCCchHHHHHHHHhhh
Q 007845 392 LASTLGTENEESCTT-YNMLKVSRHLFRW--TKEMVYADYYERALTNG 436 (587)
Q Consensus 392 L~~~l~~~~~ETCas-~~~~~l~~~Lf~~--tgd~~YaD~~EraLYN~ 436 (587)
.....--|-. .+.+...-++.+. ..|..+.+.+++++-..
T Consensus 692 -----~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~ 734 (825)
T cd04792 692 -----NSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTT 734 (825)
T ss_pred -----CCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 0112234443 4555455566677 57888888888876443
No 22
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.16 E-value=0.49 Score=49.09 Aligned_cols=227 Identities=11% Similarity=0.053 Sum_probs=132.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhccCC---CcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCch
Q 007845 177 AHMWASTHNVTLKEKMTAVVSALSECQNKMG---SGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQ 253 (587)
Q Consensus 177 a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~---DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~k 253 (587)
+..+..++|+.....+..+++.+...-...+ .|.+.. ..=+...+...|+.+++++
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G---------------------~~Gi~~~l~~l~~~~~~~~ 70 (343)
T cd04434 12 LELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSG---------------------LAGIAYALAALSKGLGDQE 70 (343)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecc---------------------hHHHHHHHHHHHHHcCCHH
Confidence 3445567899999999999888876644211 122211 1113345677788899999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhcccccc----------chh
Q 007845 254 ALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCF----------LGL 323 (587)
Q Consensus 254 aL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~----------~~p 323 (587)
.++.+.+.++.+.+..... .+ ......+ ....|+--+|..+|+.|+++.+++++..+.+.-. .++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~---~~~~d~~-~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 145 (343)
T cd04434 71 LLKELLELLLLLVELILED-LK---DLNYDLL-SGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWP 145 (343)
T ss_pred HHHHHHHHHHHhhhhhhcc-cC---CCCccee-echHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCcee
Confidence 9999999988777653210 00 0011112 2334666799999999999999999877643210 000
Q ss_pred hhh--cCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcc
Q 007845 324 LAV--QADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENE 401 (587)
Q Consensus 324 la~--~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ 401 (587)
... +.......|... =++..+..+++.+.|+.+.++++.......+.. ...++. |.+...- ........
T Consensus 146 ~~~~~~~~~~g~~HG~~--Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~-~~~~~~~~ 216 (343)
T cd04434 146 MYFPEGRVNLGLAHGLA--GILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGF-----WWPSRSN-GGNRFLVA 216 (343)
T ss_pred eeccCCccccchhhhhH--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCC-----CCCCCCC-CCccccce
Confidence 000 001111235422 234455678888889999998888887655432 222221 1100000 00011223
Q ss_pred cchhhhHHHHHHHHHHhccCCCchHHHHHHHHhhhhh
Q 007845 402 ESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVL 438 (587)
Q Consensus 402 ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN~iL 438 (587)
=...+.+.+....++.+.++|.++.+..++++-+.+-
T Consensus 217 wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (343)
T cd04434 217 WCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWK 253 (343)
T ss_pred ecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 3334577777778899999999999999988765543
No 23
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.13 E-value=0.029 Score=59.54 Aligned_cols=136 Identities=18% Similarity=0.054 Sum_probs=80.2
Q ss_pred hHHHHHHHHHhcCChHHHHHhhhccccccchhhhhcCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 007845 292 MNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNA 371 (587)
Q Consensus 292 ~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~ 371 (587)
+-.+|..+|+.|||++|++.|+.+.+........ ..+.+. +.....+...|+.|||++|++++.+..+.+..
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~-------~~~~d~-~~~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGS-------DYNLDD-HDIGFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT-------TTSCCG-TTHHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCC-------ccCCch-hhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4457889999999999999998875543211111 112222 23344446799999999999999999995553
Q ss_pred -cCceeeccCCCCCCCCCCCcccccCCCCcccchhhhH-HHHHHHHHHhccCCCchHHHHHHHHhhhhhccCCCCCCCe
Q 007845 372 -SHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYN-MLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGV 448 (587)
Q Consensus 372 -~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~-~~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa~~s~~d~g~ 448 (587)
..--..||+...+. + ...-=|.++- .+-+.-++-..|||++|.|.+.+-+-...=-..++ +.|.
T Consensus 102 ~~~~~~~G~~~~~~~----~--------~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~-~tGl 167 (336)
T PF07470_consen 102 RRPRTSDGGFWHNRP----Y--------PNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP-ETGL 167 (336)
T ss_dssp TSCBECTGCBECTTT----S--------TTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T-TTSS
T ss_pred hCCCCCCCccccCCC----C--------CCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC-CCCc
Confidence 33335677644110 0 1111133221 22344556789999999998877655554445555 4443
No 24
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.60 E-value=0.34 Score=51.56 Aligned_cols=197 Identities=15% Similarity=0.071 Sum_probs=113.4
Q ss_pred chhHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHN-VTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D-~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~ 247 (587)
..=++-++..++..+++ +.+.+.++++++.+.+.-+...+......|. .|..-....--|+- =..| |+..|+..++
T Consensus 103 ~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~~~~~~~~~G~aH-G~aG-I~~~L~~~~~ 179 (343)
T cd04794 103 RAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MYEWHGKEYLGAAH-GLAG-ILYILLQTPL 179 (343)
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cccccCceecchhh-hHHH-HHHHHHhhhh
Confidence 34456667777777763 4567788888887665522112222111111 11000000000110 0112 4456788888
Q ss_pred HcCCchHHHHHHHHHHHHHHHhhh---hcccchhh-h-hhcccccccCChHHHHHHHHHhcCChHHHHHhhhccccccch
Q 007845 248 FADNTQALKMTKWMVEYFYNRVQN---VITKYSVE-R-HWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLG 322 (587)
Q Consensus 248 ~tG~~kaL~va~r~ad~~~~~~~~---~~~~~~~~-~-~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~ 322 (587)
.+++++.++.+.+..+|+.+...+ ++...+.. . ..........|+-..+.++|++++|+++++.|+.-.+..+..
T Consensus 180 ~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (343)
T cd04794 180 FLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKR 259 (343)
T ss_pred hcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876321 11100100 0 000122344588889999999999999999887764422100
Q ss_pred hhhhcCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhc
Q 007845 323 LLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (587)
Q Consensus 323 pla~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~ 372 (587)
.+. .....-.|...- ...++..+|+.|+|+++++.|..+.+.+.++
T Consensus 260 g~~--~~~~~lCHG~~G--~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 260 GLL--KKGPGLCHGIAG--NAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred CCc--cCCCccccCccc--hHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 000 011223566432 3456678899999999999999999998876
No 25
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=95.45 E-value=0.1 Score=61.22 Aligned_cols=119 Identities=15% Similarity=0.236 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccC-CCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~ 247 (587)
.+-++=|+...+..++|..|++.+...|..|..+-++. .-+|++.- + -++.-|+..|+
T Consensus 698 ~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl--------------------~-g~i~~L~~iYk 756 (963)
T COG4403 698 LSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGL--------------------A-GVICVLVSIYK 756 (963)
T ss_pred cchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhcc--------------------H-HHHHHHHHHHh
Confidence 45567788888889999999999999999888775532 23444431 1 13456799999
Q ss_pred HcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhc-c-cccccC--ChHHHHHHHHHhcCChHHHHHhhhc
Q 007845 248 FADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWN-S-LNEETG--GMNDVLYRLYTITQDPKHLLLAHLF 315 (587)
Q Consensus 248 ~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~-~-l~~e~G--G~~eaL~~LY~~TGd~ryL~lA~~F 315 (587)
.+..++.|++|...++++++..-.. + + |+ + +.-.|| |+.-+|.+||+.|||++++..++..
T Consensus 757 ~~~epk~l~~ais~~~~l~~~~v~~-d----~--s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 757 LTDEPKFLELAISLGRILMEKIVGN-D----S--SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred hccchHHHHHHHHHHHHHHHHhhcc-c----c--ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999998654221 1 1 11 2 222444 6778999999999999999999654
No 26
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=94.98 E-value=0.5 Score=52.03 Aligned_cols=127 Identities=16% Similarity=0.015 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCcccccC------Cchhhhhhhh-cCCCCcccch--------HHHHHHHHHHHHHHc
Q 007845 185 NVTLKEKMTAVVSALSECQNKMGSGYLSAF------PSEQFDRFEA-LKPVWAPYYT--------IHKILAGLLDQYTFA 249 (587)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~------p~~~~~~l~~-~~~~W~p~Y~--------~hkl~~Glv~~y~~t 249 (587)
-+.|.+.+..-+|.|.++|. ++|.|-.. ....|.+.+. ..+.-...|. .+.+.++|-.++++-
T Consensus 93 ~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999 55443221 0112322211 0001111111 234445555566655
Q ss_pred CC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccC---C---hHHHHHHHHHhcCChHHHHHhhhccc
Q 007845 250 DN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETG---G---MNDVLYRLYTITQDPKHLLLAHLFDK 317 (587)
Q Consensus 250 G~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~G---G---~~eaL~~LY~~TGd~ryL~lA~~F~~ 317 (587)
.+ ++.|+.|++.-+|..+..+....... ......++ - +..+-++||+.|||++|++.|+.+..
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQ-----PNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTST-----CTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcc-----cccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 54 57999999999998876443211100 00011111 1 11377899999999999999988865
Q ss_pred c
Q 007845 318 P 318 (587)
Q Consensus 318 ~ 318 (587)
.
T Consensus 246 ~ 246 (444)
T PF00759_consen 246 D 246 (444)
T ss_dssp T
T ss_pred h
Confidence 3
No 27
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=94.90 E-value=0.081 Score=56.13 Aligned_cols=140 Identities=19% Similarity=0.056 Sum_probs=83.7
Q ss_pred cCChHHHHHHHHHhcCChHHHHHhhhccccccchh--hhhcCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHH
Q 007845 289 TGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGL--LAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFM 366 (587)
Q Consensus 289 ~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~p--la~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w 366 (587)
.|-.--.+.++|+.|||++||+..+...+..+..+ -....|.+..+|. ...+|+.|||++|++++.++=
T Consensus 38 ~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~~~~~id~i~~g~~---------L~~L~e~T~~~~Yl~~a~~~a 108 (357)
T COG4225 38 QGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEGGLPPRNIDHIAAGLT---------LLPLYEQTGDPRYLEAAIKLA 108 (357)
T ss_pred ccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCccchhhhccCce---------eeehhhhhCCHHHHHHHHHHH
Confidence 34334578999999999999999977755444332 1222333333332 235899999999999999999
Q ss_pred HHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHH-HHHHHHHHhccCCCchHHHHHHHHhhhhhccCCCCC
Q 007845 367 DIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNM-LKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTE 445 (587)
Q Consensus 367 ~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~-~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa~~s~~d 445 (587)
+.+++.-=.--||. |.-.. ..+.==|.+--| .-+.-++=+.+++++|.|.+=+.+-=+.-=-++| +
T Consensus 109 ~~l~~~~Rt~eG~f-----~H~~~-------~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp-~ 175 (357)
T COG4225 109 SWLVHEPRTKEGGF-----QHKVK-------YPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDP-E 175 (357)
T ss_pred HHHhhCcccCCCcc-----ccccC-------chhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCC-C
Confidence 88885543333333 11110 011112222111 1233456678899999998877766665555555 4
Q ss_pred CCeEEE
Q 007845 446 PGVMIY 451 (587)
Q Consensus 446 ~g~~~Y 451 (587)
.| .+|
T Consensus 176 TG-L~Y 180 (357)
T COG4225 176 TG-LYY 180 (357)
T ss_pred cC-ceE
Confidence 44 344
No 28
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.82 E-value=0.25 Score=55.04 Aligned_cols=205 Identities=18% Similarity=0.135 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHhhhhcccchhh----------hhhc--ccccccCChHHHHHHHHHh
Q 007845 237 KILAGLLDQYTFA--DNTQALKMTKWMVEYFYNRVQNVITKYSVE----------RHWN--SLNEETGGMNDVLYRLYTI 302 (587)
Q Consensus 237 kl~~Glv~~y~~t--G~~kaL~va~r~ad~~~~~~~~~~~~~~~~----------~~~~--~l~~e~GG~~eaL~~LY~~ 302 (587)
.++-||+.+|+++ |++.+|+.|+.+||.+...|.. +.+++.. ++.. ....|.|.+.--+.+|.++
T Consensus 81 R~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~l 159 (452)
T PF01532_consen 81 RVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQL 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHH
Confidence 4778999999999 9999999999999999988853 1111111 1110 1113566666678899999
Q ss_pred cCChHHHHHhhhcccc------c--cchhhhhcCCCCCCCcccc-------hhhHHHHHHHHHHHhC--ChhHHHHHHHH
Q 007845 303 TQDPKHLLLAHLFDKP------C--FLGLLAVQADDISGFHANT-------HIPVVIGSQMRYEVTG--DPLYKVTGTFF 365 (587)
Q Consensus 303 TGd~ryL~lA~~F~~~------~--~~~pla~~~d~l~~~HAn~-------~ip~~~G~a~~y~~TG--D~~yl~A~~~~ 365 (587)
|||++|.+.|++..+. . +.+-+....|...+.--.. .=..+.-+.+.|.++| |+.|++.-...
T Consensus 160 Tgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a 239 (452)
T PF01532_consen 160 TGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEA 239 (452)
T ss_dssp HS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHH
Confidence 9999999999887321 1 1111111111111100000 1123455678899999 88888888888
Q ss_pred HHHHHhcCceeeccCCCCC--CCCCCCc--ccc-cCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHH---Hhhhh
Q 007845 366 MDIVNASHGYATGGTSAGE--FWSDPKR--LAS-TLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA---LTNGV 437 (587)
Q Consensus 366 w~~v~~~~~y~TGG~g~~E--~f~~~~~--L~~-~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~Era---LYN~i 437 (587)
.+.|.++ +...-..-..+ .|-.... ... ..+....=+|-.-+|+.+..+++.-.++-+.|+.+=++ +|+..
T Consensus 240 ~~~i~~~-Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~~~y~~~ 318 (452)
T PF01532_consen 240 VDAIKKH-LLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCYWLYKST 318 (452)
T ss_dssp HHHHHHH-TEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH-hhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHHHHHHhc
Confidence 8777644 32221111101 1111100 000 01134678999999999999988443333333333332 45555
Q ss_pred hccCCC
Q 007845 438 LSIQRG 443 (587)
Q Consensus 438 La~~s~ 443 (587)
+.++.|
T Consensus 319 ~tGl~P 324 (452)
T PF01532_consen 319 PTGLGP 324 (452)
T ss_dssp SSSS--
T ss_pred ccCCCc
Confidence 666766
No 29
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=94.78 E-value=1.4 Score=50.10 Aligned_cols=260 Identities=12% Similarity=0.094 Sum_probs=136.7
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCc-c---cchHHHHHHHHH
Q 007845 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWA-P---YYTIHKILAGLL 243 (587)
Q Consensus 168 ~~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~-p---~Y~~hkl~~Glv 243 (587)
+.-.+|.|+--+|..++|+.|.+|+.++.|.|..+=+. +.|-- ++.-.+..-......|. + .=.+|-+..-..
T Consensus 156 ttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgiP--~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~ 232 (522)
T PTZ00470 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGFP--ASEINLATGRKSYPGWAGGCSILSEVGTLQLEFN 232 (522)
T ss_pred eehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCCC--cceeecccCCCCCcccCCCccchhhhhhHHHHHH
Confidence 36778888888888899999999999999999988652 55531 11101100001122332 1 112334444456
Q ss_pred HHHHHcCCchHHHHHHHHHHHHHHHhhhhccc----chhh-hhhcccccccCChH----HHHHHHHHhcC--ChHHHHHh
Q 007845 244 DQYTFADNTQALKMTKWMVEYFYNRVQNVITK----YSVE-RHWNSLNEETGGMN----DVLYRLYTITQ--DPKHLLLA 312 (587)
Q Consensus 244 ~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~----~~~~-~~~~~l~~e~GG~~----eaL~~LY~~TG--d~ryL~lA 312 (587)
.-.++|||++..+.+.|..+.+.+.-.+..+= ++.. ..|..-....|++- |-|.+.|-.+| |+.|+++-
T Consensus 233 ~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~~~ 312 (522)
T PTZ00470 233 YLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYRRLF 312 (522)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHHHH
Confidence 66788999999999999999887642210110 0000 01111111344443 78999999996 77777654
Q ss_pred hhccc----cccchh---hh--hcCCCCCCCcccchhhHHHHH-HHHHH-------HhCChhHHHHHHHHHHHHH-hcCc
Q 007845 313 HLFDK----PCFLGL---LA--VQADDISGFHANTHIPVVIGS-QMRYE-------VTGDPLYKVTGTFFMDIVN-ASHG 374 (587)
Q Consensus 313 ~~F~~----~~~~~p---la--~~~d~l~~~HAn~~ip~~~G~-a~~y~-------~TGD~~yl~A~~~~w~~v~-~~~~ 374 (587)
....+ .-+..+ +. ...+.-.-.|-..|+-++.|- ..+.. ...++++++.++.+.+... .++.
T Consensus 313 ~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~ 392 (522)
T PTZ00470 313 VESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYAT 392 (522)
T ss_pred HHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 43311 000000 00 000000112445566666443 22221 1134577888877766633 2345
Q ss_pred eeeccCCCCCCCCCC---CcccccC-CCC---cccchhhhHHHHHHHHHHhccCCCchHHHHHHHHhhhhhc
Q 007845 375 YATGGTSAGEFWSDP---KRLASTL-GTE---NEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS 439 (587)
Q Consensus 375 y~TGG~g~~E~f~~~---~~L~~~l-~~~---~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa 439 (587)
..||-. + |.|.-. .++.-.. ... -.|+ +-+...|+++|||++|-|+-.++ |.+|-.
T Consensus 393 ~~tGl~-P-E~~~~~~~~~~~~~~~~d~~Y~LRPE~------iES~fylyR~TgD~~yre~gW~~-f~ai~k 455 (522)
T PTZ00470 393 SPTGLG-P-EIFHFDPNSGDISPNVHDSHYILRPET------VESIFILYRLTGDPKYREWAWKI-FQAIEK 455 (522)
T ss_pred cccCCC-C-ceEEeccCccccccccCCCCCCCChhH------HHHHHHHHHHhCCHHHHHHHHHH-HHHHHH
Confidence 566543 2 443211 0000000 011 2343 33445689999999999998764 444433
No 30
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.57 E-value=1.7 Score=46.94 Aligned_cols=185 Identities=12% Similarity=-0.009 Sum_probs=103.2
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCcccccCCc-hhhhhhhhcCCCCcccchHHH----HHHHHHHHHHHc-CCchHHHH
Q 007845 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPS-EQFDRFEALKPVWAPYYTIHK----ILAGLLDQYTFA-DNTQALKM 257 (587)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~-~~~~~l~~~~~~W~p~Y~~hk----l~~Glv~~y~~t-G~~kaL~v 257 (587)
.+++....+..+++.+.+.+.....+|....+. ...... ......+.--+.| ++..|...|+.+ ++++.+++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~ 197 (382)
T cd04793 120 PDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESK--EFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEA 197 (382)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccc--cCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHH
Confidence 567777788888888877643222333322111 000000 0000000101112 445567778878 89999999
Q ss_pred HHHHHHHHHHHhhhhcc-cchhhh----------------hhcccccccCChHHHHHHHHHhcCChHHHHHhhhcccccc
Q 007845 258 TKWMVEYFYNRVQNVIT-KYSVER----------------HWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCF 320 (587)
Q Consensus 258 a~r~ad~~~~~~~~~~~-~~~~~~----------------~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~ 320 (587)
+.+..+|+.+.+-+... .+.+.+ ..........|+-.++..+++.++|+++++.|....+...
T Consensus 198 i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 277 (382)
T cd04793 198 IQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAAL 277 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99998887766522100 000000 0001112233677899999999999999999887754321
Q ss_pred chhhhh-cCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhc
Q 007845 321 LGLLAV-QADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (587)
Q Consensus 321 ~~pla~-~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~ 372 (587)
-..... +.....-.|...- +...+..+|+.|+|++++++++++.+.+...
T Consensus 278 ~~~~~~~~~~~~~lChG~~G--~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~ 328 (382)
T cd04793 278 KDKKQLSKLISPTLCHGLAG--LLFIFYLLYKDTNTNEFKSALEYLLNQIISS 328 (382)
T ss_pred hChhhhccCCCCCcCccHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 110000 0122234565322 2344567899999999999999999988754
No 31
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.40 E-value=0.19 Score=55.97 Aligned_cols=264 Identities=9% Similarity=0.047 Sum_probs=137.6
Q ss_pred cchhHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCccc-chH---HHHHHH
Q 007845 168 FVGHYLSASAHMWAST--HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPY-YTI---HKILAG 241 (587)
Q Consensus 168 ~~gkwLeA~a~~~a~t--~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~-Y~~---hkl~~G 241 (587)
+.-.+|-|+--+|..+ +|+.|.+|+.++.|.|..+-+. ++|.- ++.-.+.. .....|.+. =++ |-+..-
T Consensus 78 t~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P--~~~~n~~~--~~~~~~~~~~~~la~~gs~~lE 152 (452)
T PF01532_consen 78 TTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIP--YPRVNLRT--GGKNRWPGGESSLAEAGSLQLE 152 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS-----SEEETTT--CEEETTCCGEEEHHHHCSSHHH
T ss_pred hhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccc--cceeeecc--cCCCCCCCCcccccccccceec
Confidence 3577888886666777 9999999999999999988863 66642 22211110 011122210 122 223333
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHh-----hhhccc-chhh-hhhcccccccCChH----HHHHHHHHhcC--ChHH
Q 007845 242 LLDQYTFADNTQALKMTKWMVEYFYNRV-----QNVITK-YSVE-RHWNSLNEETGGMN----DVLYRLYTITQ--DPKH 308 (587)
Q Consensus 242 lv~~y~~tG~~kaL~va~r~ad~~~~~~-----~~~~~~-~~~~-~~~~~l~~e~GG~~----eaL~~LY~~TG--d~ry 308 (587)
...-.++|||++-.+.+.|..+.+.+.- ..+.+. .+.. ..|..-....|+.. |-|.+.|-.+| |+.|
T Consensus 153 f~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~ 232 (452)
T PF01532_consen 153 FTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQY 232 (452)
T ss_dssp HHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHH
T ss_pred hhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHH
Confidence 4556778999999999999999998721 111111 1110 01111112355554 79999999999 8888
Q ss_pred HHHhhhccc---cc-cchhhhhc---------CC---CCCCCcccchhhHHHHH-HHH-HHHhCChhHHHHHHHHHHHHH
Q 007845 309 LLLAHLFDK---PC-FLGLLAVQ---------AD---DISGFHANTHIPVVIGS-QMR-YEVTGDPLYKVTGTFFMDIVN 370 (587)
Q Consensus 309 L~lA~~F~~---~~-~~~pla~~---------~d---~l~~~HAn~~ip~~~G~-a~~-y~~TGD~~yl~A~~~~w~~v~ 370 (587)
+++=+...+ .. ...|...+ .. ...-.|...|+-++.|- ..+ ...-+++.+++.|+.+.+.-.
T Consensus 233 ~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 233 RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHH
Confidence 776544321 11 11111000 00 01111334455555443 222 234477899999998888743
Q ss_pred -hcCceeeccCCCCCCCCCCCccc----------ccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHHHhhhhhc
Q 007845 371 -ASHGYATGGTSAGEFWSDPKRLA----------STLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS 439 (587)
Q Consensus 371 -~~~~y~TGG~g~~E~f~~~~~L~----------~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa 439 (587)
-.+.++||.. + |.|.-+.... ..+........-.-+.+-+..+|+++|||++|-|+-..+ |+++-.
T Consensus 313 ~~y~~~~tGl~-P-E~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~i-f~ai~k 389 (452)
T PF01532_consen 313 WLYKSTPTGLG-P-EIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDI-FQAIEK 389 (452)
T ss_dssp HHHHTSSSSS----SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHH-HHHHHH
T ss_pred HHHHhcccCCC-c-eEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHH-HHHHHH
Confidence 3455666654 2 3322111000 000000011111235666778899999999999988765 444443
No 32
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=94.23 E-value=1 Score=48.85 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 007845 187 TLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFY 266 (587)
Q Consensus 187 ~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~ 266 (587)
++++.+-.+++....-++.---||.-+.|... ....+ | +| ||++++++.|+++|.+..++.|.+.|+-+.
T Consensus 138 ~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~---pl~sN----p--~M-Hl~EA~LA~~e~~~~~~~~~~A~~ia~l~~ 207 (388)
T COG2942 138 ELLDEALDVLERRFWREEHPLGGFEEDNPGSA---PLGSN----P--HM-HLLEAMLAAYEATGEKTWLDRADRIADLII 207 (388)
T ss_pred HHHHHHHHHHHHHHhhhcCCcccccccCCCCC---ccCCC----c--ch-HHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 56666666777766666532235555443321 11111 2 33 689999999999999999999999999999
Q ss_pred HHhhhhccc----chhhhhhccccc-----ccCChH-H---HHHHHHHhcCChHHHHHhhhcccccc---chhhhh----
Q 007845 267 NRVQNVITK----YSVERHWNSLNE-----ETGGMN-D---VLYRLYTITQDPKHLLLAHLFDKPCF---LGLLAV---- 326 (587)
Q Consensus 267 ~~~~~~~~~----~~~~~~~~~l~~-----e~GG~~-e---aL~~LY~~TGd~ryL~lA~~F~~~~~---~~pla~---- 326 (587)
.+|-..... .-+.+ |..... -.+||. | -|+++-+.-|+...+..|+++.+... .++...
T Consensus 208 ~rf~d~~~g~v~E~fd~d-W~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~ 286 (388)
T COG2942 208 SRFADAESGLVREHFDHD-WNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRAWLIEAARRLFDIAVADGWDPERGGAYY 286 (388)
T ss_pred HHhhhcccCcHhhhcccc-CCcCCCcccCCCCCchHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEE
Confidence 998541110 11111 211111 124665 3 77888999999999999988754321 111100
Q ss_pred --cCCCCCCCcccchhhHH---HHHHHHHHHhC-ChhHHHHHHHHHHHHHhcC-ceeeccC
Q 007845 327 --QADDISGFHANTHIPVV---IGSQMRYEVTG-DPLYKVTGTFFMDIVNASH-GYATGGT 380 (587)
Q Consensus 327 --~~d~l~~~HAn~~ip~~---~G~a~~y~~TG-D~~yl~A~~~~w~~v~~~~-~y~TGG~ 380 (587)
..|..+..-....-|+. ..+..++..|| ++.|.+...++|+-...+- ..+.|..
T Consensus 287 sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~~~~hl~d~~~G~W 347 (388)
T COG2942 287 SLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDYLWWHLDDPEYGLW 347 (388)
T ss_pred EecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcCCCcCCcc
Confidence 01111100012223333 33345778899 9999999999999877553 3355544
No 33
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=93.96 E-value=0.39 Score=47.41 Aligned_cols=139 Identities=21% Similarity=0.334 Sum_probs=89.5
Q ss_pred CccCCCcCcccccchhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCc-----
Q 007845 156 GWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWA----- 230 (587)
Q Consensus 156 gWe~~d~~lrGh~~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~----- 230 (587)
||.+.=+ -|+=|+.++++|..|+|++..+.+++.++-...--+ ..|-+..+... ..|-
T Consensus 25 gW~Sama------QG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~---------~~wyeEYp~ 87 (189)
T PF06662_consen 25 GWYSAMA------QGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNK---------YPWYEEYPT 87 (189)
T ss_pred CcHhHHH------HHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCC---------cEeEeecCC
Confidence 6776432 489999999999999999999999999888765555 45555442210 1222
Q ss_pred --ccchH-HHHH--HHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcc--c-----------c--cccC
Q 007845 231 --PYYTI-HKIL--AGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNS--L-----------N--EETG 290 (587)
Q Consensus 231 --p~Y~~-hkl~--~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~--l-----------~--~e~G 290 (587)
+.|++ |+|+ .||-|++..+++++|.++..+=.+=+.+.+.. .... .|.. + . .-|.
T Consensus 88 ~p~s~VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~----yD~G-~wS~Ydl~h~~~~~~~~~a~~~YH~ 162 (189)
T PF06662_consen 88 TPPSYVLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPL----YDTG-SWSRYDLRHFTLGNAPNIARWDYHR 162 (189)
T ss_pred CCCCEEeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh----hhcC-CCchhhccccccccCcCcCcchHHH
Confidence 23343 5544 48889999999988877665555444433211 1111 1110 1 0 0122
Q ss_pred ChHHHHHHHHHhcCChHHHHHhhhcc
Q 007845 291 GMNDVLYRLYTITQDPKHLLLAHLFD 316 (587)
Q Consensus 291 G~~eaL~~LY~~TGd~ryL~lA~~F~ 316 (587)
.|..=|..||.+|||+.+.+.|+++.
T Consensus 163 lHi~qL~~L~~it~d~~f~~~a~rW~ 188 (189)
T PF06662_consen 163 LHIQQLKWLYSITGDPIFKEYAERWK 188 (189)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 34467889999999999999999874
No 34
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=93.95 E-value=0.64 Score=49.46 Aligned_cols=125 Identities=19% Similarity=0.106 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHHH
Q 007845 178 HMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKM 257 (587)
Q Consensus 178 ~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~v 257 (587)
.++..++|+++++.+...|+.+.+.+. ++|.+...... +-......|- .=..| ++..++..++.+++++.++.
T Consensus 176 ~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~g~w~~~~~~---~~~~~~~~wC-hG~~G-i~~~l~~~~~~~~~~~~~~~ 248 (343)
T cd04794 176 QTPLFLLKPSLAPLIKRSLDYLLSLQF--PSGNFPSSLGN---RKRDRLVQWC-HGAPG-IVYLLAKAYLVFKEEQYLEA 248 (343)
T ss_pred hhhhhcCCccHHHHHHHHHHHHHHhhc--cCCCCCCccCC---CCCCcccccc-CCCch-HHHHHHHHHHHhCCHHHHHH
Confidence 334456889999999999999998877 67754221110 0000001131 00112 45577899999999999999
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccc
Q 007845 258 TKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (587)
Q Consensus 258 a~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~ 317 (587)
+.+.++.+.++ +.. . . ...+-.+.-|.-++|.++|+.|++++|++.|..+..
T Consensus 249 ~~~~~~~~~~~-g~~-~----~--~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 249 AIKCGELIWKR-GLL-K----K--GPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred HHHHHHHHHHh-CCc-c----C--CCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99988866532 110 0 0 012333445777899999999999999999988754
No 35
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=92.04 E-value=0.85 Score=48.23 Aligned_cols=127 Identities=21% Similarity=0.314 Sum_probs=83.2
Q ss_pred chhHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHhhccCCCcccccCCch---hhhhhhhcCCCCc---ccchHHHH
Q 007845 169 VGHYLSASAHMWAST----HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QFDRFEALKPVWA---PYYTIHKI 238 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t----~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~---~~~~l~~~~~~W~---p~Y~~hkl 238 (587)
..|=|-|+-+++... .++++.+-+..-||.+.+-|- |+|- ||.. .-++|- .|. |= +
T Consensus 220 AAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rf--psGN---yP~s~~~~~drLV----hWcHGApG-----v 285 (403)
T KOG2787|consen 220 AAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRF--PSGN---YPSSEGNKRDRLV----HWCHGAPG-----V 285 (403)
T ss_pred hhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccC--CCCC---CCcccCCCcceee----eeccCCch-----H
Confidence 345555665555432 456788889999999988888 8774 4432 111221 232 21 2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccc
Q 007845 239 LAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (587)
Q Consensus 239 ~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~ 317 (587)
+--|+.+|+..+-++.|+.+.+-+|=+.++ | ++.| +. -|....-|..-++.-||+.|||.+||-=|++|-+
T Consensus 286 ~~~L~kAy~VF~Eekyl~aa~ecadvVW~r-G-lLkk-g~-----GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 286 AYTLAKAYQVFKEEKYLEAAMECADVVWKR-G-LLKK-GV-----GICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHh-h-hhhc-CC-----cccccccCchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 224578899999999999999999988865 1 1111 00 0222223444689999999999999999999954
No 36
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=91.69 E-value=0.95 Score=50.80 Aligned_cols=140 Identities=24% Similarity=0.201 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhccC-------CCcccccCCchhhhhhh-hcCCCCcc----cchHH
Q 007845 170 GHYLSASAHMWASTH-NVTLKEKMTAVVSALSECQNKM-------GSGYLSAFPSEQFDRFE-ALKPVWAP----YYTIH 236 (587)
Q Consensus 170 gkwLeA~a~~~a~t~-D~~L~~k~d~~Vd~l~~~Q~~~-------~DGYL~t~p~~~~~~l~-~~~~~W~p----~Y~~h 236 (587)
|--|+++|.+...++ ++++.+.+...++.+.+---.. +.=|.++-.+ ++ ..+..|+| -|-
T Consensus 508 GLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~-----ve~~n~~~~~~~FldDYA-- 580 (786)
T KOG2244|consen 508 GLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGR-----VEHSNRPSKAPAFLDDYA-- 580 (786)
T ss_pred chhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcc-----eeccCCccccchhhhhHH--
Confidence 566999999988765 5588888888888776543211 2333333211 11 12245553 343
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhh----hcccchhhhhhcccccccCChH--------HHHHHHHHhcC
Q 007845 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN----VITKYSVERHWNSLNEETGGMN--------DVLYRLYTITQ 304 (587)
Q Consensus 237 kl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~----~~~~~~~~~~~~~l~~e~GG~~--------eaL~~LY~~TG 304 (587)
-++.||+|+|+++|+-..|+-|.++-|=.++-|=. .+.+...+..--.+...+.|.. -.|++||.+++
T Consensus 581 FlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~ 660 (786)
T KOG2244|consen 581 FLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVA 660 (786)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhh
Confidence 48999999999999999999999998877765421 0000011110001222222221 37999999999
Q ss_pred ChHHHHHhhhcc
Q 007845 305 DPKHLLLAHLFD 316 (587)
Q Consensus 305 d~ryL~lA~~F~ 316 (587)
.+.||+-|.++.
T Consensus 661 ~e~yl~ka~~ll 672 (786)
T KOG2244|consen 661 AESYLNKAHRLL 672 (786)
T ss_pred HHHHHHHHHHHH
Confidence 999999997764
No 37
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=89.92 E-value=0.57 Score=52.08 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH------HHHHHHHHhcCChHHH
Q 007845 236 HKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN------DVLYRLYTITQDPKHL 309 (587)
Q Consensus 236 hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~------eaL~~LY~~TGd~ryL 309 (587)
.+.+-.++-.|+.++++.+.++++.|++.+- . +.++...-.+. ..+.--.+ -+|.+||+.|++++||
T Consensus 387 ~~yll~~vra~~~s~D~~Lw~~~~~m~~~~g--L----Gdig~~~~~~~-~~~~~~~~~sp~~L~allEL~~atq~~~~l 459 (557)
T PF06917_consen 387 PDYLLPYVRAYRLSRDPELWDLARTMAHHFG--L----GDIGNAAGKEP-RVNMQTDNASPYLLFALLELYQATQDARYL 459 (557)
T ss_dssp HHHHHHHHHHHHHS--HHHHHHHHHHHHHTT-------EE-TTBTTBS--EE-TT-----HHHHHHHHHHHHHH--HHHH
T ss_pred hhHhHHHHHHHHcCCCHHHHHHHHHHHhhcC--c----ccccCcccccc-ccccCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4456688999999999999999999997332 1 22211110000 00000011 3899999999999999
Q ss_pred HHhhhc
Q 007845 310 LLAHLF 315 (587)
Q Consensus 310 ~lA~~F 315 (587)
++|...
T Consensus 460 ~lA~~~ 465 (557)
T PF06917_consen 460 ELADQV 465 (557)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 38
>PLN02266 endoglucanase
Probab=89.74 E-value=4.7 Score=45.74 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCccccc-C-----CchhhhhhhhcC-CCCcccch----------HHHHHHHHHHHH
Q 007845 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALK-PVWAPYYT----------IHKILAGLLDQY 246 (587)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t-~-----p~~~~~~l~~~~-~~W~p~Y~----------~hkl~~Glv~~y 246 (587)
.-+.+++.+..-+|.+.+||. +||-+-. . ....|..-++.. .+ |.|. .+..-++|-+.+
T Consensus 128 ~~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R--~~y~i~~~~pgsd~a~e~AAALAaas 203 (510)
T PLN02266 128 ELQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDTPR--SVFKVDKNTPGSDVAAETAAALAAAS 203 (510)
T ss_pred ccHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCCCC--eeEEeCCCCCchHHHHHHHHHHHHHH
Confidence 357888999999999999997 4443321 1 111232222111 11 2232 344556666666
Q ss_pred HHcCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhhc
Q 007845 247 TFADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (587)
Q Consensus 247 ~~tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~F 315 (587)
++-.+ ++.|+.|+++-+|..+.-+.... +........-...+|.. .+-+|||+.|||++||+.++..
T Consensus 204 ~vfk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y~~--~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 204 LVFRKSDPTYSKLLVRRAIRVFQFADKYRGAYSN--GLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHhCCCCccC--CCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 65554 46899999999998864222100 00000000111223333 3778999999999999987654
No 39
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=89.20 E-value=6.1 Score=47.02 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=94.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHHH
Q 007845 178 HMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKM 257 (587)
Q Consensus 178 ~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~v 257 (587)
++...|+-...++.+.+++..+.+.=+..-.+ .+.. -|+.+ =...| ||.--+.++++..+..-
T Consensus 658 yL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~-~~ig---a~~G~------~g~~y-------al~~I~~~~~~~~l~~~ 720 (963)
T COG4403 658 YLALVTGKDYYKEIAIKALQDSRKSVNNNLNP-INIG---AFTGL------SGYFY-------ALWKIYSVTRDNYLIQS 720 (963)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHhhhhccCC-cccc---ccccc------chhhh-------hhHHHHHhcccHHHHHH
Confidence 33446888889888888777766553311112 1110 01111 12334 55666788999999988
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccccccchhhhhcCC----CCC-
Q 007845 258 TKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQAD----DIS- 332 (587)
Q Consensus 258 a~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~~d----~l~- 332 (587)
+.+.+.++...+.. ++-...++ +-.|..-+|+.+|+.|.+||.|++|.-..+...-.. .+.| .+-
T Consensus 721 ~~~~i~~le~~v~~-------~~~~d~i~-Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~--v~~d~s~~~l~g 790 (963)
T COG4403 721 AENSIRHLEILVQK-------SKDPDFIN-GLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKI--VGNDSSETVLLG 790 (963)
T ss_pred HHHHHHHHHHHHhh-------ccCcchhh-ccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHh--hccccccceecc
Confidence 88888866654332 11111121 222444699999999999999999976643221110 0111 222
Q ss_pred CCcccchhhHHHHHHHHHHHhCChhHHHHHHHHH
Q 007845 333 GFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFM 366 (587)
Q Consensus 333 ~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w 366 (587)
-.|.+.. ++..++.+|+.|||+.++++.+.+.
T Consensus 791 fshg~sg--i~~tL~~ly~~T~e~~l~~~i~e~~ 822 (963)
T COG4403 791 FSHGASG--IILTLLKLYEATGEESLLKKIKELL 822 (963)
T ss_pred cccchHH--HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2365443 3455678999999999998887543
No 40
>PLN02175 endoglucanase
Probab=88.98 E-value=16 Score=41.27 Aligned_cols=169 Identities=14% Similarity=0.052 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccccC-----CchhhhhhhhcCCCCcccc----------hHHHHHHHHHHHHHHcCC
Q 007845 187 TLKEKMTAVVSALSECQNKMGSGYLSAF-----PSEQFDRFEALKPVWAPYY----------TIHKILAGLLDQYTFADN 251 (587)
Q Consensus 187 ~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~-----p~~~~~~l~~~~~~W~p~Y----------~~hkl~~Glv~~y~~tG~ 251 (587)
.++..++.-.|.+.+||...+++...-. +...|.+-|+... =-|.| ..+.+-++|-+.+.+-.+
T Consensus 109 ~~l~~lkw~~Dyllk~~~~~~g~vy~qVG~~~~Dh~~W~~PE~~~~-~R~~~~is~~~PGSd~aae~AAALAaaS~vfk~ 187 (484)
T PLN02175 109 NARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKCWERPEDMDT-PRTVYSVSPSNPGSDVAAETAAALAAASMVFRK 187 (484)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCeEEEEeCCCCCCcccCCChhHccC-ccceEecCCCCCccHHHHHHHHHHHHHHHHhcc
Confidence 3445556677889999963223332111 1112332222110 00222 223455556666665554
Q ss_pred ------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhhccccccc
Q 007845 252 ------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLFDKPCFL 321 (587)
Q Consensus 252 ------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~F~~~~~~ 321 (587)
++.|+.|+++-+|..+.-+........ .....-...+|.. .+-.|||+.|||++||+.++.+....
T Consensus 188 ~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~--~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~~~~~~~~~-- 263 (484)
T PLN02175 188 VDSKYSRLLLATAKKVMQFAIQYRGAYSDSLSS--SVCPFYCSYSGYKDELMWGASWLLRATNDPYYANFIKSLGGGD-- 263 (484)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCCcccCccc--cccCccccCCCccHHHHHHHHHHHHHhCCHHHHHHHHHcCCCC--
Confidence 368999999999998753321110000 0000111223433 37789999999999998776643211
Q ss_pred hhhhhcCCCCCCCcccchhhHHHHHHH-HHH------HhCChhHHHHHHHHHHHHHh
Q 007845 322 GLLAVQADDISGFHANTHIPVVIGSQM-RYE------VTGDPLYKVTGTFFMDIVNA 371 (587)
Q Consensus 322 ~pla~~~d~l~~~HAn~~ip~~~G~a~-~y~------~TGD~~yl~A~~~~w~~v~~ 371 (587)
....+.+ .+ +..|+.. +++ .++.+.|++.+++++.....
T Consensus 264 -----~~~~~~W--d~----k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~ 309 (484)
T PLN02175 264 -----QPDIFSW--DN----KYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILP 309 (484)
T ss_pred -----CCCccCC--cC----HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccC
Confidence 0011111 11 2233322 222 23446889999998887654
No 41
>PLN02909 Endoglucanase
Probab=88.67 E-value=6.5 Score=44.36 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=71.9
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCcccccC------CchhhhhhhhcCCCCcccch----------HHHHHHHHHHHHH
Q 007845 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAF------PSEQFDRFEALKPVWAPYYT----------IHKILAGLLDQYT 247 (587)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~------p~~~~~~l~~~~~~W~p~Y~----------~hkl~~Glv~~y~ 247 (587)
+-+.++..+..-+|.|.+||. ++|-+-.- +...|..-++... --|.|. .+..-++|-+.++
T Consensus 118 ~~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~-~R~~~~i~~~~pgtd~a~~~AAAlA~as~ 194 (486)
T PLN02909 118 ELENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKT-PRTVLEIDEKTPGTEIAAETAAAMAASSM 194 (486)
T ss_pred ChHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccC-CceeEecCCCCCCcHHHHHHHHHHHHHHH
Confidence 347888999999999999998 55533211 1112322221110 012333 5666667767676
Q ss_pred HcCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhh
Q 007845 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHL 314 (587)
Q Consensus 248 ~tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~ 314 (587)
+-.+ ++.|+.|+++.+|..+.-+.. +.. ...-...+|-. .+-.|||+.|||++||+.++.
T Consensus 195 vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y----~~~---~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 195 VFRHVDHKYSRRLLNKAKLLFKFAKAHKGTY----DGE---CPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHhCCCCc----CCC---CCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 6654 468999999999888752211 100 00111223322 377799999999999997654
No 42
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=87.31 E-value=4.4 Score=43.71 Aligned_cols=146 Identities=12% Similarity=0.026 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhccCCCccccc--CCch-hhhhhhhcCCCCcccchHHH--HHH
Q 007845 167 HFVGHYLSASAHMWAST-HNVTLKEKMTAVVSALSECQNKMGSGYLSA--FPSE-QFDRFEALKPVWAPYYTIHK--ILA 240 (587)
Q Consensus 167 h~~gkwLeA~a~~~a~t-~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t--~p~~-~~~~l~~~~~~W~p~Y~~hk--l~~ 240 (587)
|-+.=.+.+++.++..+ .++..++.+.+.++.+.+.+.....|-..+ ++.. .+.........-.+..|.|- +..
T Consensus 172 HG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~ 251 (382)
T cd04793 172 HGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIAR 251 (382)
T ss_pred hcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHH
Confidence 33444556666666666 899999999999998888775322331111 1110 01000000000011223322 555
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhccc
Q 007845 241 GLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (587)
Q Consensus 241 Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~ 317 (587)
+++..++.+++++.++.+.+...-+..+.... . ......+..+.-|+-+.|.++|+.|+++++++.|+++.+
T Consensus 252 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~ 323 (382)
T cd04793 252 ALQLAGKALDDQKLQEAAEKILKAALKDKKQL-S----KLISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLN 323 (382)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh-c----cCCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 77788899999999999888876655432110 0 000011333344777899999999999999999987743
No 43
>PLN02345 endoglucanase
Probab=86.57 E-value=5.3 Score=44.85 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCccccc-C-----CchhhhhhhhcCCCCcccc----------hHHHHHHHHHHHHHH
Q 007845 185 NVTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALKPVWAPYY----------TIHKILAGLLDQYTF 248 (587)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t-~-----p~~~~~~l~~~~~~W~p~Y----------~~hkl~~Glv~~y~~ 248 (587)
-+.++..+..-.|.|.+||. +||-+-. . ....|..-++.. .--|.| ..+.+-++|-+.+.+
T Consensus 81 ~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~v 157 (469)
T PLN02345 81 LDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASLV 157 (469)
T ss_pred hHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46788889999999999998 5553321 1 111232222111 011233 224555566666666
Q ss_pred cCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhh
Q 007845 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAH 313 (587)
Q Consensus 249 tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~ 313 (587)
-.+ .++|+.|+++-+|..+.-+......+... . .-.+ +|.. .+-+|||+.|||++||+.+.
T Consensus 158 fk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~--~-~Y~s-~~~~DEl~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 158 FKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQ--D-YYNS-TGYGDELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccC--C-CCCC-cccccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 655 46899999999998875322100000000 0 0011 1222 47889999999999999874
No 44
>PLN00119 endoglucanase
Probab=85.99 E-value=9.9 Score=42.96 Aligned_cols=123 Identities=11% Similarity=-0.023 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCccccc-C-----CchhhhhhhhcC-CCCcccc----------hHHHHHHHHHHHHH
Q 007845 185 NVTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALK-PVWAPYY----------TIHKILAGLLDQYT 247 (587)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t-~-----p~~~~~~l~~~~-~~W~p~Y----------~~hkl~~Glv~~y~ 247 (587)
-+.+++.+..-.|.+.+||. .+|.|-. . ....|.+-++.. .+ |.| ..+.+-++|-+.+.
T Consensus 116 ~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R--~~y~i~~~~pgSd~a~~~AAAlA~as~ 191 (489)
T PLN00119 116 LGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPR--TSYRIDAQHPGSDLAGETAAAMAAASI 191 (489)
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcC--ceeecCCCCCchHHHHHHHHHHHHHHH
Confidence 35678888889999999997 4443321 1 112343222211 11 112 24666666666666
Q ss_pred HcCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCCh----HHHHHHHHHhcCChHHHHHhhhc
Q 007845 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGM----NDVLYRLYTITQDPKHLLLAHLF 315 (587)
Q Consensus 248 ~tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~----~eaL~~LY~~TGd~ryL~lA~~F 315 (587)
.-.+ +++|+.|++..+|..+.-+......+... . .-.. .+. ..+=+|||+.|||+.|++.++..
T Consensus 192 vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~--g-~Y~s-s~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 192 AFAPSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAG--G-FYAS-SGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCC--C-CCCC-CchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 6654 46899999998988874221100000000 0 0001 122 23778999999999999977644
No 45
>PLN02308 endoglucanase
Probab=85.83 E-value=5.6 Score=44.93 Aligned_cols=123 Identities=7% Similarity=-0.069 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCcccccC-C-----chhhhhhhhcC-CCCcccc----------hHHHHHHHHHHHHHH
Q 007845 186 VTLKEKMTAVVSALSECQNKMGSGYLSAF-P-----SEQFDRFEALK-PVWAPYY----------TIHKILAGLLDQYTF 248 (587)
Q Consensus 186 ~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~-p-----~~~~~~l~~~~-~~W~p~Y----------~~hkl~~Glv~~y~~ 248 (587)
+.+++.+..-.|.+.+||. +||-+-.- . ...|..-++.. .+ +.| ..+...++|-+.+++
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R--~~y~~~~~~pgSd~a~~~AAAlA~as~v 187 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLR--TVYKIDPSHPGSDVAGETAAALAAASIV 187 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcc--eEEecCCCCCcchHHHHHHHHHHHHHHh
Confidence 4566777788999999998 56554211 0 11232222211 11 122 245666677777777
Q ss_pred cCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhh
Q 007845 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHL 314 (587)
Q Consensus 249 tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~ 314 (587)
-.+ ++.|+.|+++-+|..+.-+....... ..... .-+...|.. .+-.|||+.|||++||+.+..
T Consensus 188 f~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~-~~~~~-~Y~~~s~~~DEl~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 188 FRKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLH-AAVCP-FYCDFNGYQDELLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCC-cccCC-CcCCCCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 653 46899999999998875332110000 00000 000111222 377899999999999997654
No 46
>PLN02613 endoglucanase
Probab=85.42 E-value=5.8 Score=44.88 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=69.1
Q ss_pred CChHHHHHHHHHHHHHHHhhcc-------CCCcccccCCchhhhhhhhcCCCCcccch----------HHHHHHHHHHHH
Q 007845 184 HNVTLKEKMTAVVSALSECQNK-------MGSGYLSAFPSEQFDRFEALKPVWAPYYT----------IHKILAGLLDQY 246 (587)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~-------~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~----------~hkl~~Glv~~y 246 (587)
+.+.++..+..-.|++.+||.. .+||-.. ...|..-++.. .=-+.|. .+..-++|-+.+
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~d---H~~W~~Pe~~~-~~R~~~~~t~~~pgTd~a~~~AAALAaas 185 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNAD---HQCWERPEDMD-TPRTLYKITSSSPGSEAAGEAAAALAAAS 185 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcc---ccccCCccccC-CCCeeEecCCCCCccHHHHHHHHHHHHHH
Confidence 4578889999999999999862 0333210 11232211110 0012232 344556666666
Q ss_pred HHcCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhhc
Q 007845 247 TFADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (587)
Q Consensus 247 ~~tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~F 315 (587)
++-.+ ++.|+.|+++-+|..+.-+.. ... ...-...+|.. .+-+|||+.|||++||+.++..
T Consensus 186 ~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~y----~~~---~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 186 LVFKDVDSSYSSKLLNHARSLFEFADKYRGSY----QAS---CPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHhCCCCc----CCC---CCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 66654 468999999989888652221 100 00011122232 3778999999999999977654
No 47
>PLN03009 cellulase
Probab=85.05 E-value=8 Score=43.79 Aligned_cols=128 Identities=9% Similarity=-0.061 Sum_probs=70.3
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCccccc-C-----CchhhhhhhhcCCCCcccch----------HHHHHHHHHHHHH
Q 007845 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSA-F-----PSEQFDRFEALKPVWAPYYT----------IHKILAGLLDQYT 247 (587)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t-~-----p~~~~~~l~~~~~~W~p~Y~----------~hkl~~Glv~~y~ 247 (587)
+-+.++..+..-+|+|.++|. .+|-+-. . +...|..-++.. .=-+.|. .+..-++|-+.++
T Consensus 111 ~~~diLdeikw~~D~llkm~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~is~~~p~sd~a~~~AAalA~as~ 187 (495)
T PLN03009 111 ELRNSLVAIRWATDYLLKTVS--QPNRIFVQVGDPIADHNCWERPEDMD-TPRTVYAVNAPNPASDVAGETAAALAASSM 187 (495)
T ss_pred ccHHHHHHHHHHHHHHHHccc--CcCeEEEEeCCCCCCcccCcChhhcC-CCCeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 346788888889999999987 4443321 1 111232222111 0013342 4667667777777
Q ss_pred HcCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhh
Q 007845 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHL 314 (587)
Q Consensus 248 ~tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~ 314 (587)
+-.+ ++.|+.|+++-+|..+.-+..........-....-....|.. .+-.|||+.|||++||+-++.
T Consensus 188 vfk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 188 AFRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6654 368999999999888653221000000000000000111222 377899999999999998754
No 48
>PLN02340 endoglucanase
Probab=84.72 E-value=8.7 Score=44.61 Aligned_cols=125 Identities=11% Similarity=-0.048 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCccccc------CCchhhhhhhhcCCCCcccc----------hHHHHHHHHHHHHH
Q 007845 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSA------FPSEQFDRFEALKPVWAPYY----------TIHKILAGLLDQYT 247 (587)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t------~p~~~~~~l~~~~~~W~p~Y----------~~hkl~~Glv~~y~ 247 (587)
+-+.+++.+..-.|.+.+||. +++-|-. .....|..-++.... -+.| ..+.+-++|-+.++
T Consensus 114 ~~~~~ldeirw~~Dyllk~~~--~~~~~~~qVGdg~~DH~~W~~PE~~~~~-R~~y~i~~~~pgSd~a~e~AAAlAaas~ 190 (614)
T PLN02340 114 QMQRTLWAIRWGTDYFIKAHT--QPNVLWGQVGDGDSDHYCWERAEDMTTP-RTAYKLDQNHPGSDLAGETAAALAAASK 190 (614)
T ss_pred ChHHHHHHHHHHHHHHHHhcC--CCCeEEEEeCCCCcccccCCChhhcCCc-CceeecCCCCCccHHHHHHHHHHHHHHH
Confidence 347788889999999999987 3332211 011233322221100 0112 23455566666666
Q ss_pred HcCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhhc
Q 007845 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (587)
Q Consensus 248 ~tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~F 315 (587)
+-.+ ++.|+.|+++.+|..+.-+......+... .... . .|.. .+=.|||+.|||++||+.+...
T Consensus 191 vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~--~~Y~-s-s~~~DEl~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 191 AFKPYNSSYSDLLLVHAKQLFSFADKFRGLYDDSIQNAK--KFYT-S-SGYSDELLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCccc--cCCC-C-CCcchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5554 46899999999999875332110000000 0000 1 2222 3778999999999999988754
No 49
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=83.32 E-value=2.2 Score=44.80 Aligned_cols=180 Identities=16% Similarity=0.121 Sum_probs=98.5
Q ss_pred hcCChHHHHHHHHHHHHHHHhhccCCCcccccCC-chhhh-hhhhcCCCCcccchHHHHHHHHHHHH-HHcCCchHHHHH
Q 007845 182 STHNVTLKEKMTAVVSALSECQNKMGSGYLSAFP-SEQFD-RFEALKPVWAPYYTIHKILAGLLDQY-TFADNTQALKMT 258 (587)
Q Consensus 182 ~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p-~~~~~-~l~~~~~~W~p~Y~~hkl~~Glv~~y-~~tG~~kaL~va 258 (587)
.++++++.+.+..+++.|.+.... .. ....+ -..|. ...... . ..=..| ++.+|...| +.+++++.++++
T Consensus 121 ~~~~~~~l~~i~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~G--~-aHG~~G-i~~~L~~~~~~~~~~~~~~~~i 193 (355)
T PF05147_consen 121 KTKDPKYLDIIEKILEKLLESIIN--DD-PSENQIGSEWKEGFINLG--F-AHGIAG-ILYALLRLYKKGTKDPEYLKLI 193 (355)
T ss_dssp HHCCHHS-HHHHHHHHHCCCHHCC--CH-TCCGSSSHHCHTTBEE-S--T-TTSHHH-HHHHHCHCCHHT--HHHHHHCH
T ss_pred hccchHHHHHHHHHHHHHHHHHhh--cc-cccCCCccccCCCCccCC--c-cccHHH-HHHHHHHhhhcccCchhHHHHH
Confidence 447888888888888888877762 11 00000 00110 000000 0 000223 444666777 689999999999
Q ss_pred HHHHHHHHHHhhhhcccc----hhhhh--hcccccccCChHHHHHHHHHhcCChHHHHHhhhccccccchhhhhcCCCCC
Q 007845 259 KWMVEYFYNRVQNVITKY----SVERH--WNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDIS 332 (587)
Q Consensus 259 ~r~ad~~~~~~~~~~~~~----~~~~~--~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~~d~l~ 332 (587)
.+..++..+.+......+ ..+.. ......+..|+--++.++++.++++.+.+.+..+......... ......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 271 (355)
T PF05147_consen 194 EQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGL--FLNNPS 271 (355)
T ss_dssp HHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T--CTTSS-
T ss_pred HHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc--cCCCCc
Confidence 999999998764311111 11100 0011122336767999999999999999998876543221100 112222
Q ss_pred CCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhc
Q 007845 333 GFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (587)
Q Consensus 333 ~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~ 372 (587)
-.|...- .+.-+..+|+.++++.+++.++.+++.+++.
T Consensus 272 lCHG~aG--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T PF05147_consen 272 LCHGTAG--ILEILLDLYKYTGDEEYKELANKLIQKLLSY 309 (355)
T ss_dssp STTSHHH--HHHHHHHHHHHH--HCCHHHHHHHHHHHCTT
T ss_pred eeCchHH--hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3466432 2333567899999999999999999998855
No 50
>PLN02420 endoglucanase
Probab=82.27 E-value=12 Score=42.67 Aligned_cols=163 Identities=10% Similarity=0.010 Sum_probs=85.3
Q ss_pred hHHHhcCCCCCC----CCCCCccCCCcCcccccchhHHHHHHHHHHh---------------cCChHHHHHHHHHHHHHH
Q 007845 140 SFQKTAGSPTAG----KAYEGWEDPTCELRGHFVGHYLSASAHMWAS---------------THNVTLKEKMTAVVSALS 200 (587)
Q Consensus 140 nFr~~AGl~~~g----~~~ggWe~~d~~lrGh~~gkwLeA~a~~~a~---------------t~D~~L~~k~d~~Vd~l~ 200 (587)
++|..++++... .-.|||.+-+ | -+||.--.|++... .+-+.++..++.-+|.+.
T Consensus 68 ~Wr~~s~~~Dg~~~~~DlsGGwyDAG-D-----~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~ll 141 (525)
T PLN02420 68 TWRDHSGLTDGLEQGVDLVGGYHDAG-D-----HVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFI 141 (525)
T ss_pred cccccCcCcCCCcCcccCCCcceecC-c-----cceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHH
Confidence 366666665411 2457898764 1 34444333332221 245788999999999999
Q ss_pred HhhccCCCcccc-cC-----CchhhhhhhhcC-CCCcccc----------hHHHHHHHHHHHHHHcCC------chHHHH
Q 007845 201 ECQNKMGSGYLS-AF-----PSEQFDRFEALK-PVWAPYY----------TIHKILAGLLDQYTFADN------TQALKM 257 (587)
Q Consensus 201 ~~Q~~~~DGYL~-t~-----p~~~~~~l~~~~-~~W~p~Y----------~~hkl~~Glv~~y~~tG~------~kaL~v 257 (587)
+||. .++-+- -. ....|..-++.. .+ |.| ..+..-++|-..++.-.+ ++.|+.
T Consensus 142 k~~~--~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R--~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~ 217 (525)
T PLN02420 142 KAHT--SPNVLWAEVGDGDTDHYCWQRPEDMTTSR--RAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHH 217 (525)
T ss_pred HhCc--CCCceEEeeCCCCcccccccChhhccccC--ceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 9997 332221 00 001122111110 01 122 134455555556665554 368999
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhhcccccccCCh----HHHHHHHHHhcCChHHHHHhhhc
Q 007845 258 TKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGM----NDVLYRLYTITQDPKHLLLAHLF 315 (587)
Q Consensus 258 a~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~----~eaL~~LY~~TGd~ryL~lA~~F 315 (587)
|+++.+|..+.-+.... +......... ...|. ..+-.|||+.|||++||+.+...
T Consensus 218 Ak~ly~fA~~~~g~y~~--~~~~~~g~Y~-s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 218 AQQLFEFGDKYRGKYDE--SLKVVKSYYA-SVSGYMDELLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred HHHHHHHHHhcCCccCC--CCcccCCCCC-CcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99988888864222100 0000000001 11112 23778999999999999988654
No 51
>PLN02171 endoglucanase
Probab=82.18 E-value=16 Score=42.66 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCccccc-CC-----chhhhhhhhcCCCCcccc----------hHHHHHHHHHHHHHH
Q 007845 185 NVTLKEKMTAVVSALSECQNKMGSGYLSA-FP-----SEQFDRFEALKPVWAPYY----------TIHKILAGLLDQYTF 248 (587)
Q Consensus 185 D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t-~p-----~~~~~~l~~~~~~W~p~Y----------~~hkl~~Glv~~y~~ 248 (587)
-+.+++.+..-.|.+.+||. ++|-|-. .- ...|..-++.... -+.| ..+..-++|-+.+++
T Consensus 115 ~~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~-R~~y~i~~~~pgSd~a~e~AAAlAaaS~v 191 (629)
T PLN02171 115 LGHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTD-RQAYRIDPQNPGSDLAGETAAAMAAASIV 191 (629)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHcccc-ceeEEecCCCCchHHHHHHHHHHHHHHHh
Confidence 35677888889999999997 3332211 00 0113222211100 1233 246666667677776
Q ss_pred cCC------chHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChH----HHHHHHHHhcCChHHHHHhhhc
Q 007845 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMN----DVLYRLYTITQDPKHLLLAHLF 315 (587)
Q Consensus 249 tG~------~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~----eaL~~LY~~TGd~ryL~lA~~F 315 (587)
-.+ +++|+.|+++.+|..+.-+.... +......... ...|.. .+-.|||+.|||++||+.+...
T Consensus 192 fk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~--~~~~~~~~Y~-s~s~y~DEl~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 192 FRRSNPGYANELLTHAKQLFDFADKYRGKYDS--SITVAQKYYR-SVSGYGDELLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHhCCCcccC--CCcccCCccC-CCCCccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 654 46899999999998875321100 0000000111 112222 3778999999999999987654
No 52
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=81.07 E-value=5 Score=42.02 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHH-----hcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHH
Q 007845 169 VGHYLSASAHMWA-----STHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLL 243 (587)
Q Consensus 169 ~gkwLeA~a~~~a-----~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv 243 (587)
+.|=+.|++.+++ .+++++.++.+..+++.+.+.+....++|........ ... ...|. |-.-=+..++.
T Consensus 165 ~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~WC--~G~~Gi~~~~~ 238 (355)
T PF05147_consen 165 FAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSN---YKS-RPSWC--YGSPGILLALL 238 (355)
T ss_dssp TTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHH---HHC---SSS--SSHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccc---ccc-ccccc--cCcHHHHHHHH
Confidence 3444555555544 5668999999999999999988643456443322211 100 22342 22212445677
Q ss_pred HHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcCChHHHHHhhhcc
Q 007845 244 DQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFD 316 (587)
Q Consensus 244 ~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~ 316 (587)
..++..+++...+.+.+.+..+.+.-.. ..-..+..+.-|.-+.+..+|+.|++++|.+.|+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (355)
T PF05147_consen 239 KAYKILDDEEYDEEAEQALESILQKGLF--------LNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLI 303 (355)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHHH-TC--------TTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcccc--------CCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8899999999999998888776653100 0001233344577789999999999999999998883
No 53
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=78.19 E-value=2.5 Score=36.77 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCC
Q 007845 172 YLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADN 251 (587)
Q Consensus 172 wLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~ 251 (587)
..-+++.++...+++...+.+++.++.|.++|. +||-++..+.+ ..++.-..+..| .+++.
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~~~~-------------~~~~t~~~~~~l----~~~~~ 88 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYSGGE-------------YVSMTAAAIAAL----ALAGV 88 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH-----TTS--S-TS---------------HHHHHHHHHHHH----HHHHT
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCcCCC-------------CHHHHHHHHHHH----HHhCC
Confidence 344455556666788999999999999999999 89866543221 111111122222 23333
Q ss_pred chHHHHHHHHHHHHHHH
Q 007845 252 TQALKMTKWMVEYFYNR 268 (587)
Q Consensus 252 ~kaL~va~r~ad~~~~~ 268 (587)
..-.+.+.|-.+||.+.
T Consensus 89 ~~~~~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 89 YPDDEAVERGLEWILSH 105 (109)
T ss_dssp T--HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 33556677888888865
No 54
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=77.70 E-value=1.2e+02 Score=33.46 Aligned_cols=262 Identities=15% Similarity=0.093 Sum_probs=154.6
Q ss_pred HhHHHhcCCCCCCCCCCCccCCCc------CcccccchhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccC-CCccc
Q 007845 139 WSFQKTAGSPTAGKAYEGWEDPTC------ELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYL 211 (587)
Q Consensus 139 ~nFr~~AGl~~~g~~~ggWe~~d~------~lrGh~~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~DGYL 211 (587)
-+|-..+|+++++..+-.+-+.|. +=|....-.-+=..|.+......+..++.++-=|+.+.+.-..- +.||.
T Consensus 21 lp~w~~~g~d~~~GGffe~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~ 100 (388)
T COG2942 21 LPFWLNAGVDTEGGGFFEALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYF 100 (388)
T ss_pred hhhhcccCcCCCCCCceeeeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEE
Confidence 378888999875421112222221 11122223333334443344446668888887777777553321 33443
Q ss_pred ccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCC
Q 007845 212 SAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGG 291 (587)
Q Consensus 212 ~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG 291 (587)
-.-....- +..+ --.|+--=.+.+ .+++-.+|++++.++....-+.+.++|-.. ++ ..+|
T Consensus 101 ~~~~dg~~--~Dat----~d~Y~haFallA-~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~-------~~------pl~~ 160 (388)
T COG2942 101 ALDNDGGP--VDAT----KDLYGHAFALLA-AAHAATAGPPRADELLDEALDVLERRFWRE-------EH------PLGG 160 (388)
T ss_pred EecCCCCc--cccc----HhHHHHHHHHHH-HHHHHhcCChhHHHHHHHHHHHHHHHHhhh-------cC------Cccc
Confidence 32111000 0000 123432222222 344557899999988888877777776441 10 0011
Q ss_pred hHHHHHHHHHhcCChHHHHHhhhccccccchhhhhcCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 007845 292 MNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNA 371 (587)
Q Consensus 292 ~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~ 371 (587)
|+.| .+ +-.| +-.|.|+-++..+...|+.||++.|++-+..+-+.|.+
T Consensus 161 --------~e~~-------------~~-~~~p----------l~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~ 208 (388)
T COG2942 161 --------FEED-------------NP-GSAP----------LGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIIS 208 (388)
T ss_pred --------cccc-------------CC-CCCc----------cCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 1111 00 0011 13466777899999999999999999999999999886
Q ss_pred cCceeeccCCC-CCCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHHHhhhhhccCCCCCCCeEE
Q 007845 372 SHGYATGGTSA-GEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMI 450 (587)
Q Consensus 372 ~~~y~TGG~g~-~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN~iLa~~s~~d~g~~~ 450 (587)
+. +-+..|. .|+|..+-.-.........|-==-.++++|..++-+..++..-.+..=|+.-|++--|.++ +.|.++
T Consensus 209 rf--~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~A~~lf~~a~~~g~d~-~~gg~~ 285 (388)
T COG2942 209 RF--ADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRAWLIEAARRLFDIAVADGWDP-ERGGAY 285 (388)
T ss_pred Hh--hhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhccCc-ccCeEE
Confidence 64 3444443 7888765421111112466777778999999999999999888888888999999999999 788777
Q ss_pred EecCC
Q 007845 451 YMLPL 455 (587)
Q Consensus 451 Y~nPL 455 (587)
|-.-.
T Consensus 286 ~sl~~ 290 (388)
T COG2942 286 YSLDD 290 (388)
T ss_pred EEecC
Confidence 65433
No 55
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=77.19 E-value=1.4e+02 Score=34.24 Aligned_cols=243 Identities=14% Similarity=0.140 Sum_probs=126.8
Q ss_pred cccCCCC--eEeCCCccchHHHHHHHHHHH---hcCcchhhHhHHHhcCCCCCCCCCCCccCCCcCcccccchhH-----
Q 007845 103 KEVSLHD--VKLDPSSLHWRAQQTNLEYLL---MLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHY----- 172 (587)
Q Consensus 103 ~~~~l~~--V~l~~~~~~~~~~~~~~~~ll---~~~~drll~nFr~~AGl~~~g~~~ggWe~~d~~lrGh~~gkw----- 172 (587)
..+|.+. ++.. |.|+.=--+. +..++ .+.|.++.+-|..--|+..+|. . .+.+|=.||+.||=
T Consensus 386 DSlp~h~~k~k~E-GAfyaWt~dE-Iqqll~e~~i~p~~~fdl~a~hygvk~sGn-v----s~ssDPhgel~gkNVL~vr 458 (786)
T KOG2244|consen 386 DSLPFHGAKRKKE-GAFYAWTSDE-IQQLLGENAIGPASLFDLFAEHYGVKKSGN-V----SSSSDPHGELAGKNVLIVR 458 (786)
T ss_pred CCCcccccccccc-cceEEeeHHH-HHHHhCCCCCCcchHHHHHHHHcCCCCCCC-C----CCCCCCcccccCceEEEEe
Confidence 3445433 4554 5665322222 22344 3456666666766678876553 1 22223446665552
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcC
Q 007845 173 --LSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFAD 250 (587)
Q Consensus 173 --LeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG 250 (587)
.|+.|-- -...-+++++-+++--+.|-.+..+-|-=-|.+ +. =-.|. |-++.|++-.+.+++
T Consensus 459 ~s~e~taan-f~lsve~~kkll~e~~e~L~~aR~kRPkPHLDs---Ki-------i~sWn-----GLviSgl~kag~~~~ 522 (786)
T KOG2244|consen 459 NSTEATAAN-FSLSVEKYKKLLGECREKLFDARLKRPKPHLDS---KI-------IVSWN-----GLVISGLAKAGKILK 522 (786)
T ss_pred cchHhhHhh-ccccHHHHHHHHHHHHHHHHHHhhcCCCCCccc---hh-------eeecc-----chhhHHHHHHHHHhh
Confidence 2333221 123456777777777776665544212222211 00 01243 336788888888888
Q ss_pred Cc-hHHHHHHHHHHHHHHHhhhhcccchhhh-hh-cc-cccccC-------ChH-------HHHHHHHHhcCChHHHHHh
Q 007845 251 NT-QALKMTKWMVEYFYNRVQNVITKYSVER-HW-NS-LNEETG-------GMN-------DVLYRLYTITQDPKHLLLA 312 (587)
Q Consensus 251 ~~-kaL~va~r~ad~~~~~~~~~~~~~~~~~-~~-~~-l~~e~G-------G~~-------eaL~~LY~~TGd~ryL~lA 312 (587)
-+ +.++-+...++++-+.+-....++-..+ .. .. -..|++ |.- .+|.+||+.+|+-.||+.|
T Consensus 523 a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA 602 (786)
T KOG2244|consen 523 AEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWA 602 (786)
T ss_pred cCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHHHHHH
Confidence 76 8999999999988765432111100000 00 00 000111 222 3899999999999999999
Q ss_pred hhcccc---ccchh------hhhcCCCC-------CC--CcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 007845 313 HLFDKP---CFLGL------LAVQADDI-------SG--FHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVN 370 (587)
Q Consensus 313 ~~F~~~---~~~~p------la~~~d~l-------~~--~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~ 370 (587)
.++.+. -|++. ...+.|.. .| .-+|+. .+.-+.++|-+++.+.|++.|.++..-..
T Consensus 603 ~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSV--sahNLvrL~~~~~~e~yl~ka~~ll~~fs 676 (786)
T KOG2244|consen 603 IKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSV--SAHNLVRLASIVAAESYLNKAHRLLAVFS 676 (786)
T ss_pred HHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccch--hhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 888442 22221 11111111 01 112220 11234578888999999999998877544
No 56
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=75.35 E-value=23 Score=37.46 Aligned_cols=127 Identities=12% Similarity=-0.058 Sum_probs=75.2
Q ss_pred HHHHHHHhcCChHHHHHhhhccc-------cccchhhhhcCCCCCCCcccc--------hhhHHHHHHHHHHHhCC----
Q 007845 295 VLYRLYTITQDPKHLLLAHLFDK-------PCFLGLLAVQADDISGFHANT--------HIPVVIGSQMRYEVTGD---- 355 (587)
Q Consensus 295 aL~~LY~~TGd~ryL~lA~~F~~-------~~~~~pla~~~d~l~~~HAn~--------~ip~~~G~a~~y~~TGD---- 355 (587)
-|.++|+.|+|++|.+.+.+=.+ +..-+|- .+.+.+ +-.. .+.++.-+.++++-.++
T Consensus 52 fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQ---f~p~~~-~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~ 127 (290)
T TIGR02474 52 YLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQ---FYPLKG-GYSDAITYNDNAMVNVLTLLDDIANGKDPFDVF 127 (290)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCc---ccCCcC-CcccccccCcHHHHHHHHHHHHHHhccCCcccc
Confidence 79999999999999998866422 1111110 011111 1122 34455555566654432
Q ss_pred -----hhHHHHHHHHHHHHHhcCceeeccCC---C--CC-CCCC----CCcccccCCCCcccchhhhHHHHHHHHHHhcc
Q 007845 356 -----PLYKVTGTFFMDIVNASHGYATGGTS---A--GE-FWSD----PKRLASTLGTENEESCTTYNMLKVSRHLFRWT 420 (587)
Q Consensus 356 -----~~yl~A~~~~w~~v~~~~~y~TGG~g---~--~E-~f~~----~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~t 420 (587)
++...|+++..+.|.+.+.-..|=.+ . +| -+.| .|++|. -.+.||+..+..|+ -.-.
T Consensus 128 ~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pS---ls~~ES~~iv~~LM-----~~~~ 199 (290)
T TIGR02474 128 PDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPS---LSSSESVGILLFLM-----TQPN 199 (290)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcc---cccccHHHHHHHHh-----cCCC
Confidence 68899999999999988866544333 3 34 2333 344332 25778877765542 2234
Q ss_pred CCCchHHHHHHHH
Q 007845 421 KEMVYADYYERAL 433 (587)
Q Consensus 421 gd~~YaD~~EraL 433 (587)
+++++.+-+|-++
T Consensus 200 ps~~i~~ai~~A~ 212 (290)
T TIGR02474 200 PSAEIKEAIRAGV 212 (290)
T ss_pred CCHHHHHHHHHHH
Confidence 7788888777665
No 57
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=73.68 E-value=6.6 Score=41.38 Aligned_cols=130 Identities=18% Similarity=0.052 Sum_probs=70.8
Q ss_pred HHHHHHHhcCChHHHHHhhhccc-------ccc----chhhhhcCCCCCCCcccchhhHHHHHHHHHHHhCCh-------
Q 007845 295 VLYRLYTITQDPKHLLLAHLFDK-------PCF----LGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDP------- 356 (587)
Q Consensus 295 aL~~LY~~TGd~ryL~lA~~F~~-------~~~----~~pla~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~------- 356 (587)
-|.++|+.|+|++|++.+.+=.+ +.- +.|+..+--..-..--+..+.++.=+.+++.-.++-
T Consensus 47 fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~ 126 (289)
T PF09492_consen 47 FLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESL 126 (289)
T ss_dssp HHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHH
Confidence 79999999999999998865322 111 112211100000000122344444455677777777
Q ss_pred --hHHHHHHHHHHHHHhcCceeeccCCC-----CCC-CCC----CCcccccCCCCcccchhhhHHHHHHHHHHhcc-CCC
Q 007845 357 --LYKVTGTFFMDIVNASHGYATGGTSA-----GEF-WSD----PKRLASTLGTENEESCTTYNMLKVSRHLFRWT-KEM 423 (587)
Q Consensus 357 --~yl~A~~~~w~~v~~~~~y~TGG~g~-----~E~-f~~----~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~t-gd~ 423 (587)
++++|+++..+.|.+.++-+.|=... +|. +.+ .+++|. -.+.||...+..| ..+. +.+
T Consensus 127 ~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pS---ls~~ES~~iv~~L------M~~~~ps~ 197 (289)
T PF09492_consen 127 RARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPS---LSGSESVGIVRFL------MSLPNPSP 197 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SS---EECCCHHHHHHHH------CTSSS--H
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcc---cccccHHHHHHHH------hcCCCCCH
Confidence 89999999999999999987654443 343 332 344433 2577877666554 3333 557
Q ss_pred chHHHHHHHH
Q 007845 424 VYADYYERAL 433 (587)
Q Consensus 424 ~YaD~~EraL 433 (587)
++..-+|-++
T Consensus 198 ~v~~aI~~Av 207 (289)
T PF09492_consen 198 EVLAAIEAAV 207 (289)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776664
No 58
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=73.25 E-value=24 Score=37.30 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCc-ccccCCchhhhhhhhcCCCCcccc-----hHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSG-YLSAFPSEQFDRFEALKPVWAPYY-----TIHKILAGL 242 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DG-YL~t~p~~~~~~l~~~~~~W~p~Y-----~~hkl~~Gl 242 (587)
..-=|.-++.+|..++|+..++.+.+-|+.|+++|- ++| |=.-||.. +.++... .+-++|+.|
T Consensus 46 T~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~~---------~~Y~~~ITfND~am~~vl~lL 114 (290)
T TIGR02474 46 TVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPLK---------GGYSDAITYNDNAMVNVLTLL 114 (290)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCCc---------CCcccccccCcHHHHHHHHHH
Confidence 455577788889999999999999999999999999 564 33222321 1111111 155788888
Q ss_pred HHHHHHcCC---------chHHHHHHHHHHHHHHH
Q 007845 243 LDQYTFADN---------TQALKMTKWMVEYFYNR 268 (587)
Q Consensus 243 v~~y~~tG~---------~kaL~va~r~ad~~~~~ 268 (587)
.+.++.-+. +++..++.|-.+||.+.
T Consensus 115 ~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 115 DDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred HHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 877764442 68888999999999864
No 59
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=69.80 E-value=47 Score=37.25 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=71.4
Q ss_pred hcCChHHHHHHHHHHHHHHHhhccCCCccccc-CCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHH----H
Q 007845 182 STHNVTLKEKMTAVVSALSECQNKMGSGYLSA-FPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQAL----K 256 (587)
Q Consensus 182 ~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t-~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL----~ 256 (587)
..+|.+ -+.+.|+.+...|. ++|.+.. +|.... .. .-.|-|.++ .+..+-++|+++||.+++ +
T Consensus 164 ~~~~~~---l~~~~l~~~~~~q~--~~G~~p~~~P~~~~-~~-----~~~~~w~l~-~i~~~~~~y~~tGD~~~l~~~~~ 231 (509)
T PF05592_consen 164 SFGDAA---LYRKWLRDFADSQR--PDGLLPSVAPSYGG-GG-----FGIPDWSLA-WIIIPWDYYLYTGDREFLEEYYP 231 (509)
T ss_dssp CT--HH---HHHHHHHHHHGGTT--TSTT-SSBSS---S-SG-----GGBHHHHHH-HHHHHHHHHHHHT-HHHHHHHHH
T ss_pred hCCcHH---HHHHHHHHHHHhhc--ccCCceEEecccCC-CC-----CCCccHHHH-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 345554 46778889999999 8998875 354210 00 112445543 456889999999998765 5
Q ss_pred HHHHHHHHHHHHhhhh---cccchhhhhhc----ccccccCC----------hHHHHHHHHHhcCCh----HHHHHhhhc
Q 007845 257 MTKWMVEYFYNRVQNV---ITKYSVERHWN----SLNEETGG----------MNDVLYRLYTITQDP----KHLLLAHLF 315 (587)
Q Consensus 257 va~r~ad~~~~~~~~~---~~~~~~~~~~~----~l~~e~GG----------~~eaL~~LY~~TGd~----ryL~lA~~F 315 (587)
.++++.||+.....+. ........ |. ......++ .-+.+.+|.+..|++ +|.++|+.+
T Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~D-W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~l 310 (509)
T PF05592_consen 232 AMKRYLDYLERRVDDGLDGLPGWGFGD-WLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERL 310 (509)
T ss_dssp HHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccCCCCCceee-cCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888765540 01111111 11 00001111 114688899999974 899999887
Q ss_pred cc---cccchh
Q 007845 316 DK---PCFLGL 323 (587)
Q Consensus 316 ~~---~~~~~p 323 (587)
.. ..|+++
T Consensus 311 k~a~~~~~~d~ 321 (509)
T PF05592_consen 311 KAAINRHFWDP 321 (509)
T ss_dssp HHHHHHHCEET
T ss_pred HHHHHHhccCc
Confidence 43 345544
No 60
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=69.33 E-value=22 Score=38.00 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHH-h--hhhcccchhhhhhccc---ccccCChHHHHHHHHHhcCChHHHHHhhhccccccc-hhhh
Q 007845 253 QALKMTKWMVEYFYNR-V--QNVITKYSVERHWNSL---NEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFL-GLLA 325 (587)
Q Consensus 253 kaL~va~r~ad~~~~~-~--~~~~~~~~~~~~~~~l---~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~~~~~-~pla 325 (587)
.+++.+++-.||+.+. | |+.+...+..+ ..| ...-+|+.-.|++.|++-+|++||+-|..--+--+. +-+.
T Consensus 242 ~~~~dVK~sldym~~~rfpsGNyP~s~~~~~--drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLk 319 (403)
T KOG2787|consen 242 ALLKDVKGSLDYMIQNRFPSGNYPSSEGNKR--DRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLK 319 (403)
T ss_pred hHHHhhhhHHHHHHHccCCCCCCCcccCCCc--ceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 4678888889999754 4 22222211111 111 123458888999999999999999988665432111 1222
Q ss_pred hcCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcC
Q 007845 326 VQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASH 373 (587)
Q Consensus 326 ~~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~ 373 (587)
++...-.+.-.|.. .+..+|+.|||.+|+-.|..|-+.+.++-
T Consensus 320 kg~GichGvaGNaY-----vFLsLyRLT~d~kYlyRA~kFae~lld~~ 362 (403)
T KOG2787|consen 320 KGVGICHGVAGNAY-----VFLSLYRLTGDMKYLYRAKKFAEWLLDYG 362 (403)
T ss_pred cCCcccccccCchh-----hhHhHHHHcCcHHHHHHHHHHHHHHHhhh
Confidence 22211111112221 23459999999999999999999988654
No 61
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=66.67 E-value=31 Score=36.45 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=63.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccc-----hHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYY-----TIHKILAGLL 243 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y-----~~hkl~~Glv 243 (587)
...=|.-+|.+|..++|++.++-+.+-|+.|+++|-. ..||=.-||... ..+... .|-.+|.=|.
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQyp-nGGWPQ~yP~~~---------~Y~~~ITfNDdam~~vl~lL~ 110 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYP-NGGWPQFYPLRG---------GYHDHITFNDDAMVNVLELLR 110 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-T-TS--BSECS--S---------GGGGSEE-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC-CCCCCccCCCCC---------CCCCceEEccHHHHHHHHHHH
Confidence 5556788999999999999999999999999999994 346666666421 011111 2455666778
Q ss_pred HHHHHcCCc---------hHHHHHHHHHHHHHHH
Q 007845 244 DQYTFADNT---------QALKMTKWMVEYFYNR 268 (587)
Q Consensus 244 ~~y~~tG~~---------kaL~va~r~ad~~~~~ 268 (587)
+.++..++- ++.+.+.|-.|+|.+.
T Consensus 111 ~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~t 144 (289)
T PF09492_consen 111 DVAEGKGDFAFVDESLRARARAAVDKGIDCILKT 144 (289)
T ss_dssp HHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877 8999999999999865
No 62
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=64.63 E-value=94 Score=35.64 Aligned_cols=184 Identities=21% Similarity=0.210 Sum_probs=97.9
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhccCCCcccccC--CchhhhhhhhcCCCCcccch-HHH----HHHHHHHHHHHcCCch
Q 007845 181 ASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAF--PSEQFDRFEALKPVWAPYYT-IHK----ILAGLLDQYTFADNTQ 253 (587)
Q Consensus 181 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~--p~~~~~~l~~~~~~W~p~Y~-~hk----l~~Glv~~y~~tG~~k 253 (587)
..++||.+.+|+..+.+.+.+.-. |+|-..-| |.. ..|...-+ +|- +++=|+-.+..+|++.
T Consensus 344 ~ltg~P~~~ekv~~IRk~l~k~ek--P~GLypnYinP~s---------g~wgq~~tslg~lgDSfyeyllK~wl~s~kTd 412 (625)
T KOG2204|consen 344 KLTGNPTFAEKVVKIRKVLNKSEK--PHGLYPNYINPSS---------GEWGQHHTSLGALGDSFYEYLLKAWLQSDKTD 412 (625)
T ss_pred hccCCchHHHHHHHHHHHHHhhcC--CCCCCcccccCCC---------CchhhHHhHHhhhhhhHHHHHHHHHhhcCCcc
Confidence 458999999999999999999888 88754444 221 13332222 111 3344667777788776
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhh-hhh------------c--ccccccCChHHHHHHHHHhcCC-----hHHHHHhh
Q 007845 254 ALKMTKWMVEYFYNRVQNVITKYSVE-RHW------------N--SLNEETGGMNDVLYRLYTITQD-----PKHLLLAH 313 (587)
Q Consensus 254 aL~va~r~ad~~~~~~~~~~~~~~~~-~~~------------~--~l~~e~GG~~eaL~~LY~~TGd-----~ryL~lA~ 313 (587)
.-+.+|.+=.....+..+-+.++. ..+ . -+.|--|| |..|=.++++ ++|++|+.
T Consensus 413 --~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gG----m~algA~~~~~~~~~~~y~el~~ 486 (625)
T KOG2204|consen 413 --CEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGG----MFALGAIKGDTVGSSKHYLELGG 486 (625)
T ss_pred --hHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhccccc----ceeeccccCCCcchhHHHHHHhH
Confidence 334444332222222100000111 000 0 12222344 4446666664 58999998
Q ss_pred hccccc---c------chhhhhcCCCCCCCcccc--------hhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCcee
Q 007845 314 LFDKPC---F------LGLLAVQADDISGFHANT--------HIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYA 376 (587)
Q Consensus 314 ~F~~~~---~------~~pla~~~d~l~~~HAn~--------~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~ 376 (587)
-+...+ | ++|.+..-+.-...-+++ .-.++.+.--+|++|||+.|++-.......+. ++--+
T Consensus 487 eia~TchesY~rt~T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~wgweavqale-k~cr~ 565 (625)
T KOG2204|consen 487 EIATTCHESYTRTTTKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSWGWEAVQALE-KYCRV 565 (625)
T ss_pred HHHHHHHHHHhccccccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-Hhccc
Confidence 774432 1 233222111111111111 12356778889999999999997666665555 44445
Q ss_pred eccCCC
Q 007845 377 TGGTSA 382 (587)
Q Consensus 377 TGG~g~ 382 (587)
.+|.+.
T Consensus 566 ~~G~~g 571 (625)
T KOG2204|consen 566 AKGYSG 571 (625)
T ss_pred ccchhh
Confidence 666654
No 63
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=64.50 E-value=9.7 Score=41.88 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhh-----------hhhc--ccccccCChHHHHHHHHHhc
Q 007845 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVE-----------RHWN--SLNEETGGMNDVLYRLYTIT 303 (587)
Q Consensus 237 kl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~-----------~~~~--~l~~e~GG~~eaL~~LY~~T 303 (587)
.++-||+.+|..+|++-.|+.|+.++|-+...|.. +..++.. ..|. ....|.-.+..-+-.|-++|
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~s-ps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~lt 257 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSS-PSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLT 257 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcC-CCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhc
Confidence 47789999999999999999999999999988843 1111110 0110 01112222222456688999
Q ss_pred CChHHHHHhhhcc
Q 007845 304 QDPKHLLLAHLFD 316 (587)
Q Consensus 304 Gd~ryL~lA~~F~ 316 (587)
||++|-++|.+..
T Consensus 258 gd~kY~~~a~kv~ 270 (546)
T KOG2431|consen 258 GDPKYEELAEKVT 270 (546)
T ss_pred CCchHHHHHHHHH
Confidence 9999999998863
No 64
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=61.06 E-value=15 Score=41.31 Aligned_cols=85 Identities=18% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHhcCChHHHHHhhhccccccchhhhh---cCCCCCCCcccchhhHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 007845 295 VLYRLYTITQDPKHLLLAHLFDKPCFLGLLAV---QADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNA 371 (587)
Q Consensus 295 aL~~LY~~TGd~ryL~lA~~F~~~~~~~pla~---~~d~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~ 371 (587)
++++-|++++|+...+++..+-+.--++.+-. ..-.+...+.+..-..+.++.++|+.|++++|++.|+.+=+++++
T Consensus 392 ~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~l~~ 471 (557)
T PF06917_consen 392 PYVRAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGENLFE 471 (557)
T ss_dssp HHHHHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999988866433332211 111112233455566778999999999999999999999999996
Q ss_pred cCceeeccC
Q 007845 372 SHGYATGGT 380 (587)
Q Consensus 372 ~~~y~TGG~ 380 (587)
+|. .-|=+
T Consensus 472 ~~~-~~GlF 479 (557)
T PF06917_consen 472 QHF-HRGLF 479 (557)
T ss_dssp HHE-ETTEE
T ss_pred HHc-cCcee
Confidence 653 34444
No 65
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=58.31 E-value=69 Score=33.63 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhhccCCCcccccCCch---hhhhhh---hcCCCC--cccchHHHH
Q 007845 169 VGHYLSASAHMWAST--HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QFDRFE---ALKPVW--APYYTIHKI 238 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t--~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~---~~~~l~---~~~~~W--~p~Y~~hkl 238 (587)
.+.-+.+++.+.... +++...+.++..++.|.++|+ +||-+..+... .|.+.. ..+..+ ....+.++.
T Consensus 94 Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~--~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~ 171 (348)
T cd02889 94 TAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQN--SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSV 171 (348)
T ss_pred hHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhcc--CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHH
Confidence 456666666544443 246778899999999999999 89888766321 121000 000011 112345666
Q ss_pred HHHHHHHHHHcCC--chHHHHHHHHHHHHHHH
Q 007845 239 LAGLLDQYTFADN--TQALKMTKWMVEYFYNR 268 (587)
Q Consensus 239 ~~Glv~~y~~tG~--~kaL~va~r~ad~~~~~ 268 (587)
+.+|...-....+ ++..+.+.|..+|+.+.
T Consensus 172 l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~ 203 (348)
T cd02889 172 LEALGLFGKLYPEHRREIDPAIRRAVKYLERE 203 (348)
T ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHh
Confidence 6777654432221 12445677777887653
No 66
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=55.81 E-value=79 Score=34.75 Aligned_cols=188 Identities=12% Similarity=0.100 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccch----HHHHHHHHH
Q 007845 170 GHYLSASAHMWAS--THNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYT----IHKILAGLL 243 (587)
Q Consensus 170 gkwLeA~a~~~a~--t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~----~hkl~~Glv 243 (587)
+..--|+|.++.. .-|+++.++.-+-...+-+.-++.++-|....+. .....|+ ...++-|++
T Consensus 157 ~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~-----------~~~~~Y~~~~~~De~~wAA~ 225 (444)
T PF00759_consen 157 AEFAAALAAASRVFKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQP-----------NGGGFYNSSGYEDELAWAAA 225 (444)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTC-----------TTTTTSHCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCccc-----------ccCCcccCCCcccHHHHHHH
Confidence 4444444444433 2377766665555444444433334444332211 0111222 233566889
Q ss_pred HHHHHcCCchHHHHHHHHHHHHHHHhhhhcccchhhhhhcccccccCChHHHHHHHHHhcC--------ChHHHHHhhhc
Q 007845 244 DQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQ--------DPKHLLLAHLF 315 (587)
Q Consensus 244 ~~y~~tG~~kaL~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG~~eaL~~LY~~TG--------d~ryL~lA~~F 315 (587)
..|++||+++-++.+.+..+-+...... . ...-.|.. . ...+.+-|...+- .++++..++.+
T Consensus 226 ~Ly~aTg~~~Y~~~a~~~~~~~~~~~~~--~--~~~~~W~~---~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~ 295 (444)
T PF00759_consen 226 ELYRATGDESYLDYAKEYYDDLEASQWS--N--EWSFSWDN---K---AAGAQLLLAKLTNDDPSRDAAREQYKSAADKF 295 (444)
T ss_dssp HHHHHHT-HHHHHHHHHHCCTSSBSTTS--S--SSSSCTTB---S---HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhHHhhcccccc--c--ccccchhh---h---hhhhhHHHHhcccchhhhHHHHHHHHHHHHHH
Confidence 9999999988887776664322110000 0 00000110 0 1124444555541 24555555555
Q ss_pred cccccchh---hhhcCCCC---CCCcccchhhHHHHHHHHHH---HhCChhHHHHHHHHHHHHHhcC----ceeec
Q 007845 316 DKPCFLGL---LAVQADDI---SGFHANTHIPVVIGSQMRYE---VTGDPLYKVTGTFFMDIVNASH----GYATG 378 (587)
Q Consensus 316 ~~~~~~~p---la~~~d~l---~~~HAn~~ip~~~G~a~~y~---~TGD~~yl~A~~~~w~~v~~~~----~y~TG 378 (587)
.+...-.+ .......+ ...-.+++.....-++.+|. .+++++|++.+....+-|.... +|+||
T Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~WGs~~~~~~~a~l~~~~~~~~~~~~~~y~~~a~~qldyiLG~Np~~~SyV~G 371 (444)
T PF00759_consen 296 LNKWLNDGYGSVPYTPGGLAWIYEWGSNRYAANAAFLALAYAKYDLTGDQEYRDFAQSQLDYILGRNPFGQSYVTG 371 (444)
T ss_dssp HHHHHHSTTTBSEBCTTSSBESESTTHHHHHHHHHHHHHHHHHTCHCHHHHHHHHHHHHHHHHHTTSTT--BSBTT
T ss_pred HHHHhhccCCCcccCccccccccCCCccHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhhhhcCcCCCCceeeec
Confidence 32111000 00000000 11112333444455566777 9999999999999999998764 77776
No 67
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=53.50 E-value=1.3e+02 Score=32.57 Aligned_cols=182 Identities=13% Similarity=0.226 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhh---hcccchhhhh---hcccccccC-ChH---HHHHHHHHh
Q 007845 233 YTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN---VITKYSVERH---WNSLNEETG-GMN---DVLYRLYTI 302 (587)
Q Consensus 233 Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~~~---~~~~~~~~~~---~~~l~~e~G-G~~---eaL~~LY~~ 302 (587)
-|.|-++.-..+.-+.||.+-.-+-|+|..|++.+.-.+ +.+- ...-| |..-..+.| |+. |-+.+.|-+
T Consensus 185 ac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~-~inihsgdw~rkdsgigagidsyyey~lkayil 263 (587)
T KOG2430|consen 185 ACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGT-TINIHSGDWTRKDSGIGAGIDSYYEYLLKAYIL 263 (587)
T ss_pred hccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccce-eEEeccCcceecccCcCcchHHHHHHHHHHhhe
Confidence 366777777777788999999999999999999864322 1110 00101 111011222 444 788999999
Q ss_pred cCChHHHHHhhhccccccchhhh---hcCCCCCCCcccchhhHH--HHHHHH--------HHHhCCh-hHHHHHHHHHHH
Q 007845 303 TQDPKHLLLAHLFDKPCFLGLLA---VQADDISGFHANTHIPVV--IGSQMR--------YEVTGDP-LYKVTGTFFMDI 368 (587)
Q Consensus 303 TGd~ryL~lA~~F~~~~~~~pla---~~~d~l~~~HAn~~ip~~--~G~a~~--------y~~TGD~-~yl~A~~~~w~~ 368 (587)
-||+.||+ +|.... +.+. .+...+-..|- |-|++ -|+.+. -.+.||- .-.+.-+-+++.
T Consensus 264 lgddsfld---rfn~hy--dai~ryi~k~pi~ldvhi--hkp~l~ar~~mdallaf~pglqvlkgdik~aie~heml~qv 336 (587)
T KOG2430|consen 264 LGDDSFLD---RFNKHY--DAIKRYINKGPIFLDVHI--HKPMLAARGFMDALLAFFPGLQVLKGDIKEAIEMHEMLFQV 336 (587)
T ss_pred eccHHHHH---HHHHHH--HHHHHHhcCCCeEEEEec--ccchhhHhhHHHHHHHhCcchhhhccccHHHHHHHHHHHHH
Confidence 99999986 332211 1100 00001111232 22332 333331 2345663 223344456665
Q ss_pred HHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHHHhh
Q 007845 369 VNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTN 435 (587)
Q Consensus 369 v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~EraLYN 435 (587)
|-+++.. -|+|+.+... ..+|.=---+..-++.-|++.|||+.|..+--+.+=|
T Consensus 337 ikkh~fl-------peaft~df~v------hwaehpirpefaestyflykat~dp~yl~v~k~iidn 390 (587)
T KOG2430|consen 337 IKKHKFL-------PEAFTHDFQV------HWAEHPIRPEFAESTYFLYKATGDPHYLEVAKQIIDN 390 (587)
T ss_pred HHHcccC-------hHhhccccee------ecccCCCChhhhhhheeeecccCCchHHHHHHHHHHH
Confidence 5544433 3666665431 2222222233334455689999999999887766544
No 68
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=53.44 E-value=85 Score=33.87 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccC---CchhhhhhhhcCCCCcccchHHHHHHHHHHHH
Q 007845 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAF---PSEQFDRFEALKPVWAPYYTIHKILAGLLDQY 246 (587)
Q Consensus 170 gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~---p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y 246 (587)
|-.|=-.|-.-..|+++-+++++.+.+|.+-+-.+. ..--.|+. ....|++-+.+ +=+ -+.-.++=++-+|
T Consensus 188 gtlilefaals~~tg~~ifee~arkaldflwekr~r-ss~l~g~~inihsgdw~rkdsg--iga---gidsyyey~lkay 261 (587)
T KOG2430|consen 188 GTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHR-SSDLMGTTINIHSGDWTRKDSG--IGA---GIDSYYEYLLKAY 261 (587)
T ss_pred chhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcc-cccccceeEEeccCcceecccC--cCc---chHHHHHHHHHHh
Confidence 444433444456799999999999999987654331 33333332 22234332211 001 1111235567888
Q ss_pred HHcCCchHHHHHHHHHHHHHHHhh
Q 007845 247 TFADNTQALKMTKWMVEYFYNRVQ 270 (587)
Q Consensus 247 ~~tG~~kaL~va~r~ad~~~~~~~ 270 (587)
-.-|++..|+-.-+..|-|.+.+.
T Consensus 262 illgddsfldrfn~hydai~ryi~ 285 (587)
T KOG2430|consen 262 ILLGDDSFLDRFNKHYDAIKRYIN 285 (587)
T ss_pred heeccHHHHHHHHHHHHHHHHHhc
Confidence 889999999988888888877654
No 69
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=51.97 E-value=7.2 Score=26.08 Aligned_cols=19 Identities=32% Similarity=0.537 Sum_probs=14.5
Q ss_pred CcchhhHHHHHHHHhhccc
Q 007845 1 MKNFVFKVLVLFLSCWVAL 19 (587)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (587)
||+.++-++++++|.||+.
T Consensus 7 mKkil~~l~a~~~LagCss 25 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 3777776777888999973
No 70
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=49.89 E-value=1.6e+02 Score=33.81 Aligned_cols=158 Identities=20% Similarity=0.315 Sum_probs=84.5
Q ss_pred hHhHHHhcCCCCCC--CCCCCccCCCcCcccccchhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCC
Q 007845 138 VWSFQKTAGSPTAG--KAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFP 215 (587)
Q Consensus 138 l~nFr~~AGl~~~g--~~~ggWe~~d~~lrGh~~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p 215 (587)
||+.|-.-||-... ..-|-|-.+++-+ |--+=-+-|-+...|..-+|+++.+.-.+.-..|..--+. ++=|.+-.-
T Consensus 228 lW~~RS~igLlGn~idV~tG~W~~~~sGI-GAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r~-~~wY~~V~m 305 (622)
T KOG2429|consen 228 LWSLRSGIGLLGNHIDVQTGEWTAPDSGI-GAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTRK-GPWYVNVNM 305 (622)
T ss_pred HHhhcCCCCcccceeeccccceecccccc-ccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhhc-CCeEEEEec
Confidence 67777766764211 1224487776553 2234466777788888899999988877776666554442 222222110
Q ss_pred ------chhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhhhhcccchhh-------hh
Q 007845 216 ------SEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADN-TQALKMTKWMVEYFYNRVQNVITKYSVE-------RH 281 (587)
Q Consensus 216 ------~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~-~kaL~va~r~ad~~~~~~~~~~~~~~~~-------~~ 281 (587)
-..|+.|+. -|. |++ -.+|+ +.|......+ =-+.++||-+++..... +-
T Consensus 306 ~~G~v~~p~~dSLqA---fwp----------Glq---vLaGDvd~A~~~h~~y-~~vwkkyG~lPEryN~~~~~~~~~~~ 368 (622)
T KOG2429|consen 306 DSGSVSLPWFDSLQA---FWP----------GLQ---VLAGDVDDAIRTHLMY-FSVWKKYGFLPERYNLATQEPPPKRE 368 (622)
T ss_pred CCCceehHHHhhHHh---hcc----------chh---hhhcchHHHHHHHHHH-HHHHHHcCCCcccccccCCCCCCCcc
Confidence 011222221 111 221 12344 1222222222 12456677654433221 11
Q ss_pred hcccccccCChHHHHHHHHHhcCChHHHHHhhhccc
Q 007845 282 WNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (587)
Q Consensus 282 ~~~l~~e~GG~~eaL~~LY~~TGd~ryL~lA~~F~~ 317 (587)
+-.|++ .+.|+.+.||+.|+|+.||++...+.+
T Consensus 369 ~YPLRP---ElvEStyyLYrATkdp~yL~vG~~~l~ 401 (622)
T KOG2429|consen 369 GYPLRP---ELVESTYYLYRATKDPFYLHVGEDMLK 401 (622)
T ss_pred cCCCCH---HHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 112443 345899999999999999999988744
No 71
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=49.00 E-value=47 Score=33.79 Aligned_cols=45 Identities=9% Similarity=-0.152 Sum_probs=30.4
Q ss_pred ccchhhHHHHHHHHHHHhCChhHHHHHHH-HHHHHHhcCceeeccC
Q 007845 336 ANTHIPVVIGSQMRYEVTGDPLYKVTGTF-FMDIVNASHGYATGGT 380 (587)
Q Consensus 336 An~~ip~~~G~a~~y~~TGD~~yl~A~~~-~w~~v~~~~~y~TGG~ 380 (587)
.|..+-...+++.+..+++|+++.+.+.+ +++.+...++...|..
T Consensus 165 nNh~~~~~~~~~~~ai~l~d~~~~~~a~~~~~~~~~~~qi~~dG~~ 210 (272)
T PF05426_consen 165 NNHGTWANAAVMAIAIFLDDDELYDRAVNRFKKGIINKQIDPDGSQ 210 (272)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHCHHCCC-TTS-B
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhcccccccc
Confidence 45556667788888899999877666655 5777777777777733
No 72
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=48.18 E-value=46 Score=38.03 Aligned_cols=93 Identities=13% Similarity=0.137 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCch-hhhhhhhcCCCCc------------------ccc
Q 007845 173 LSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE-QFDRFEALKPVWA------------------PYY 233 (587)
Q Consensus 173 LeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~-~~~~l~~~~~~W~------------------p~Y 233 (587)
++=+|..|+.++|++.++.+|++|.++...-...+||=+. +|.. .|+..- +.|. ..=
T Consensus 413 m~R~AeyYy~tGd~~ak~ildKWv~W~~~~~~~~~dG~f~-IPs~L~WSGqP---DtW~~s~t~N~nLHV~V~~yg~DvG 488 (619)
T PF02011_consen 413 MERVAEYYYETGDARAKAILDKWVAWALSNTTVNSDGTFE-IPSTLEWSGQP---DTWTGSPTGNPNLHVTVTDYGQDVG 488 (619)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHTT-EE-TTS-EE-EEEEEEEES--------TTS----TTEEEEEEEEE--HH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhceeCCCCcEe-cCCCCcccCCC---CCccCCCCCCCceEEEEecCCCchh
Confidence 7789999999999999999999999999876655676222 2432 122110 1111 122
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh
Q 007845 234 TIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRV 269 (587)
Q Consensus 234 ~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~ 269 (587)
+++-+...|+-|.-.+|++++.++|+++-|-+.+..
T Consensus 489 va~S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~~ 524 (619)
T PF02011_consen 489 VAGSYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNNY 524 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhC
Confidence 455566677777778999999999999999887643
No 73
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=46.89 E-value=70 Score=27.48 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=35.5
Q ss_pred HHHH--HHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 007845 192 MTAV--VSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYN 267 (587)
Q Consensus 192 ~d~~--Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~ 267 (587)
.+++ ++.|.++|. +||-++..|...- ...|. .+.++... ...|.+...+.+.|..+|+..
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~~----------~~~~~---t~~~l~~l-~~~~~~~~~~~~~~a~~~l~~ 103 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGGP----------PDVYT---TYVALAAL-ELLGRPDDEEAVRKAVDWLLS 103 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-----------BSHHH---HHHHHHHH-HHHT-GGCHTTHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCCC----------ccHHH---HHHHHHHH-HHcCCCcccHHHHHHHHHHHH
Confidence 5556 999999999 8998887653110 01121 22333333 445555557777888888886
No 74
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=45.54 E-value=1.4e+02 Score=34.97 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=39.2
Q ss_pred CCCCccCCC-------cCcccccchhHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhccCCCcccccCC
Q 007845 153 AYEGWEDPT-------CELRGHFVGHYLSASAHMWASTH--NVTLKEKMTAVVSALSECQNKMGSGYLSAFP 215 (587)
Q Consensus 153 ~~ggWe~~d-------~~lrGh~~gkwLeA~a~~~a~t~--D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p 215 (587)
+.|||.+++ ++ ..+.-|.|+..+....+ ++.-.+.+++.|+.|..+|. +||-+.+|.
T Consensus 358 ~~GGW~fs~~~~~~pd~d----~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn--~dGgf~~y~ 423 (634)
T cd02892 358 RKGGWAFSTANQGYPDSD----DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQN--SNGGFAAFE 423 (634)
T ss_pred CCCCCCCCCCCCCCCCcC----chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccC--CCCCEeeec
Confidence 457887642 22 25666666655443332 45667899999999999999 898888763
No 75
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=43.30 E-value=1.5e+02 Score=34.70 Aligned_cols=81 Identities=11% Similarity=0.260 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCcccccCCch---hh-hhhhh---cCCC-Ccccc--hHHHHHHHHHHHHHHcCCch
Q 007845 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QF-DRFEA---LKPV-WAPYY--TIHKILAGLLDQYTFADNTQ 253 (587)
Q Consensus 184 ~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~---~~-~~l~~---~~~~-W~p~Y--~~hkl~~Glv~~y~~tG~~k 253 (587)
+++...+.+++.|+.|.+.|. +||-.++|... .| ..+.. -.+. .-+-| +.+..+++|..+- . ..+.
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~-~-r~~~ 457 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG-H-RADE 457 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc-C-ccHh
Confidence 456677889999999999999 89988887421 11 11100 0011 11223 5677888876542 1 1134
Q ss_pred HHHHHHHHHHHHHHH
Q 007845 254 ALKMTKWMVEYFYNR 268 (587)
Q Consensus 254 aL~va~r~ad~~~~~ 268 (587)
..+.+.|..+|+.+.
T Consensus 458 ~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 458 IRNVLERALEYLRRE 472 (621)
T ss_pred HHHHHHHHHHHHHHh
Confidence 557888888998864
No 76
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=42.76 E-value=6 Score=34.37 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh
Q 007845 192 MTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRV 269 (587)
Q Consensus 192 ~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~~ 269 (587)
|+..|+.|.+.|. +||..+. + +.. ..+ ...+++.++...|+.+..+.+.|.++|+.+.-
T Consensus 1 i~~~~~~l~~~Q~--~dG~W~~-~---~~~---------~~~----~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 1 IKRAAEWLLSQQN--PDGSWGY-N---WGS---------DVF----VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp -----------------------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred Ccccccccccccc--ccccccc-c---ccc---------ccc----ccccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 4678999999999 8987742 2 110 111 12334555556678888888899999999763
No 77
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=41.03 E-value=2.5e+02 Score=32.60 Aligned_cols=125 Identities=9% Similarity=0.116 Sum_probs=68.2
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCC--CCcccch-HHHHHHHHHHHHHHcCCchH---
Q 007845 181 ASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKP--VWAPYYT-IHKILAGLLDQYTFADNTQA--- 254 (587)
Q Consensus 181 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~--~W~p~Y~-~hkl~~Glv~~y~~tG~~ka--- 254 (587)
...+++ +.+.+.++.+.+.|. +||++-. ..+ +..... .|..--. .+.++-++..|++.||+..+
T Consensus 308 ~~~G~~---~~a~~~l~~l~~~q~--~~G~~~~---~~~--~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~ 377 (616)
T TIGR01577 308 DRAGYH---DRVDRFFRWAMQTQS--RDGSWQQ---RYY--LNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEE 377 (616)
T ss_pred HHCCCH---HHHHHHHHHHHHhhC--cCCCcce---EEe--cCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHH
Confidence 344454 456667999999999 8887521 111 100001 1111111 23355577788899998754
Q ss_pred -HHHHHHHHHHHHHHhhhhcccchhhhhhcccccc---cCChH----HHHHHHHHhcCCh----HHHHHhhhcc
Q 007845 255 -LKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEE---TGGMN----DVLYRLYTITQDP----KHLLLAHLFD 316 (587)
Q Consensus 255 -L~va~r~ad~~~~~~~~~~~~~~~~~~~~~l~~e---~GG~~----eaL~~LY~~TGd~----ryL~lA~~F~ 316 (587)
.+.+++.++|+.+..++-.+ .+....|+.-.+. .-.+. ....+|.+..|++ +|.+.|+.+.
T Consensus 378 ~~~~v~~a~~fl~~~~~~~l~-~~~~~lWEer~G~~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik 450 (616)
T TIGR01577 378 IWESVQKAAQYLILFIDPETP-LPCRDLWEEREGVFTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAAEFIK 450 (616)
T ss_pred HHHHHHHHHHHHHHhccCCCC-CCCCccceecCCccCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 56788999999886532111 1122344421101 11111 3566788888874 6777777764
No 78
>PLN00119 endoglucanase
Probab=39.58 E-value=1e+02 Score=35.02 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhC--C----hhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHHH
Q 007845 343 VIGSQMRYEVTG--D----PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHL 416 (587)
Q Consensus 343 ~~G~a~~y~~TG--D----~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~L 416 (587)
+..+|..+++-. | ++++++|+.+|+...+++..-.......+. .|+.+.-.=+++.-+-.|
T Consensus 183 AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g-------------~Y~ss~~~DEl~WAAawL 249 (489)
T PLN00119 183 AAAMAAASIAFAPSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGG-------------FYASSGYEDELLWAAAWL 249 (489)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCC-------------CCCCCchhhHHHHHHHHH
Confidence 344445555433 4 457999999999988776331111111111 233333344677777889
Q ss_pred HhccCCCchHHHHHHH
Q 007845 417 FRWTKEMVYADYYERA 432 (587)
Q Consensus 417 f~~tgd~~YaD~~Era 432 (587)
++.|||.+|.++++..
T Consensus 250 Y~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 250 HRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHhCCHHHHHHHHhc
Confidence 9999999999998754
No 79
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=39.05 E-value=64 Score=37.34 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCCccCCCcCcccccchhHHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhhccCCCcccccC------CchhhhhhhhcC
Q 007845 154 YEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKE-KMTAVVSALSECQNKMGSGYLSAF------PSEQFDRFEALK 226 (587)
Q Consensus 154 ~ggWe~~d~~lrGh~~gkwLeA~a~~~a~t~D~~L~~-k~d~~Vd~l~~~Q~~~~DGYL~t~------p~~~~~~l~~~~ 226 (587)
.|-|.+=|+.+..|..+-+.+.++.+++..-++.=.+ .++.+++.+.+.=. ..|-+.. +.++|+ ..
T Consensus 406 ~g~w~DYd~~~~~~~~~~~~sn~~Pl~~~~~~~~~~~~~~~~v~~~le~~g~---~~~p~giP~Sl~~s~eQWD----~P 478 (600)
T KOG0602|consen 406 DGAWFDYDLELKKHNTYFYASNFAPLWAGCYPAPDDDKSVDKVLDYLEKSGA---LTFPGGIPTSLSNSGEQWD----FP 478 (600)
T ss_pred CCcceeccccccccCCCcCchhhhhhhccCCCcccccchHHHHHHHHHHcCC---cCCCCCCcccCCCchhhcc----CC
Confidence 4669988999999999999999999998765533232 45555555554331 1222222 345664 34
Q ss_pred CCCcccchHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHhh
Q 007845 227 PVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMV-EYFYNRVQ 270 (587)
Q Consensus 227 ~~W~p~Y~~hkl~~Glv~~y~~tG~~kaL~va~r~a-d~~~~~~~ 270 (587)
+.|+|.= |-+++||. .+|++.+.++|.|+| .|+...|.
T Consensus 479 n~WaP~q--~m~~~gl~----~~~~~~~~~~A~kla~~wl~~~~~ 517 (600)
T KOG0602|consen 479 NGWAPNQ--HMAIEGLR----RAGNQELQEVALKLAQRWLETNFA 517 (600)
T ss_pred CCCCcce--ehhhhhhh----hcCCHHHHHHHHHHHHHHHHHhhh
Confidence 5899864 34777874 679999999999998 67776654
No 80
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=36.57 E-value=1.6e+02 Score=34.55 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCCCccCCCcCc---ccccchhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcccccCCchh-hhhhhhcC--
Q 007845 153 AYEGWEDPTCEL---RGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQ-FDRFEALK-- 226 (587)
Q Consensus 153 ~~ggWe~~d~~l---rGh~~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~-~~~l~~~~-- 226 (587)
+.|||-++...- .=-....-|.|+..+ ....++...+.+++-|+.|...|. +||..++|.... ..-++..+
T Consensus 364 ~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~~~~~~~~l~~~~f~ 440 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFDVDNTSDLLNHIPFC 440 (635)
T ss_pred CCCccCCCCCCCCCCCchhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEecccCCcchhHHhcCCcc
Confidence 457887652110 000256677777654 222456677899999999999999 899998873211 00011000
Q ss_pred C--CC-cccc--hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 007845 227 P--VW-APYY--TIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNR 268 (587)
Q Consensus 227 ~--~W-~p~Y--~~hkl~~Glv~~y~~tG~~kaL~va~r~ad~~~~~ 268 (587)
+ .- -|-+ +.++++++|.. .|.++.-+.+.|-.+|+.+.
T Consensus 441 d~~~~~D~~~~d~Ta~~l~al~~----~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 441 DFGAVTDPPTADVTARVLECLGS----FGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred ccccccCCCCccHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHc
Confidence 0 00 0111 23455555543 34444356777778888754
No 81
>PLN02266 endoglucanase
Probab=36.05 E-value=1.3e+02 Score=34.32 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHH
Q 007845 356 PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA 432 (587)
Q Consensus 356 ~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~Era 432 (587)
+++|++|+.+|+...+++.-...++.+.. .+.+. ..+.-.=+++.-+-.|++.|||.+|.|.++..
T Consensus 215 ~~~L~~Ak~ly~fa~~~~g~y~~~~~~~~--~~~y~---------s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 215 KLLVRRAIRVFQFADKYRGAYSNGLKPDV--CPFYC---------SYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCccc--CCCcc---------cCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46799999999999877642222221110 11110 11112235555667899999999999999763
No 82
>PLN02345 endoglucanase
Probab=36.02 E-value=1.3e+02 Score=33.95 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHH
Q 007845 356 PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYE 430 (587)
Q Consensus 356 ~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~E 430 (587)
.+++++|+.+|+...+++.--...+.....|- +++--.=+++.-+-.|++.|||.+|.+++.
T Consensus 167 ~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y-------------~s~~~~DEl~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 167 DTLLKHAKQLFNFADKYRGSYSESIPEVQDYY-------------NSTGYGDELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCCccCCCC-------------CCcccccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46799999999998887632111122212221 111112346666677999999999999984
No 83
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=35.21 E-value=5e+02 Score=30.68 Aligned_cols=89 Identities=11% Similarity=0.027 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCccc-ccCCchhhhhhhhcCCCCcc--cchHHHHHHHHHHHH
Q 007845 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYL-SAFPSEQFDRFEALKPVWAP--YYTIHKILAGLLDQY 246 (587)
Q Consensus 170 gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL-~t~p~~~~~~l~~~~~~W~p--~Y~~hkl~~Glv~~y 246 (587)
+=|+.=++++....-..-..+.+.++.+.|.+.|+ ++|++ ..| + + ++...|.+ +=..+.++.++-.++
T Consensus 294 yvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~--~~G~~lq~y----~--v-dG~~~~~~iQlD~~g~~i~~~~~l~ 364 (648)
T TIGR01535 294 LVWPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQ--DNGMFPQNS----W--V-DGKPYWTGIQLDETAFPILLAYRLH 364 (648)
T ss_pred EEehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhc--cCCCcCcee----c--c-CCCCCCCCccccHHHHHHHHHHHHH
Confidence 44665555554443333345667788888999999 78875 222 1 1 12233332 111234444443444
Q ss_pred HHcCCchHHHHHHHHHHHHHHH
Q 007845 247 TFADNTQALKMTKWMVEYFYNR 268 (587)
Q Consensus 247 ~~tG~~kaL~va~r~ad~~~~~ 268 (587)
+ .|.....+++++.|||+.+.
T Consensus 365 ~-~~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 365 R-YDHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred H-cCcHHHHHHHHHHHHHHHHc
Confidence 4 34445667888999999875
No 84
>PRK11443 lipoprotein; Provisional
Probab=34.07 E-value=25 Score=32.45 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=13.6
Q ss_pred CcchhhHHHHHHHHhhccc
Q 007845 1 MKNFVFKVLVLFLSCWVAL 19 (587)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (587)
||.+++ ++++++|.||+.
T Consensus 1 Mk~~~~-~~~~~lLsgCa~ 18 (124)
T PRK11443 1 MKKFIA-PLLALLLSGCQI 18 (124)
T ss_pred ChHHHH-HHHHHHHHhccC
Confidence 887776 566678999885
No 85
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=33.60 E-value=26 Score=31.05 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.6
Q ss_pred CcchhhHHHHHHHHhhccccCcccCC
Q 007845 1 MKNFVFKVLVLFLSCWVALCKECTNS 26 (587)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (587)
||++++..+++++|.||+...-+.+.
T Consensus 1 mKk~ll~~~lallLtgCatqt~~~~~ 26 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQTFTVGN 26 (97)
T ss_pred CcHHHHHHHHHHHHcccceeEEEeCC
Confidence 99999988999999999988887653
No 86
>PRK10449 heat-inducible protein; Provisional
Probab=32.13 E-value=28 Score=32.54 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=18.5
Q ss_pred CcchhhHHHHHHHHhhccccCcc
Q 007845 1 MKNFVFKVLVLFLSCWVALCKEC 23 (587)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (587)
||.++..++++++|.+|+.....
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~~~ 23 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGKI 23 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCC
Confidence 88888778888889999886543
No 87
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=31.87 E-value=5.1e+02 Score=30.45 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=63.2
Q ss_pred CCCCccCCCcC--c-ccccchhHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHhhccCCCcccccCCc---hhhhh-h
Q 007845 153 AYEGWEDPTCE--L-RGHFVGHYLSASAHMWASTH---NVTLKEKMTAVVSALSECQNKMGSGYLSAFPS---EQFDR-F 222 (587)
Q Consensus 153 ~~ggWe~~d~~--l-rGh~~gkwLeA~a~~~a~t~---D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~---~~~~~-l 222 (587)
..|||-+++.+ . .--..+.-|+|+..+-.... ++.-.+++.+.|+.|..+|. +||=.++|.. ..|-+ +
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn--~dGGw~~y~~~~~~~~l~~~ 434 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQN--EDGGFGTYERQRGPRVLELL 434 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcC--CCCCEeccCCCCcHHHHhcC
Confidence 45778765311 0 00125677777655422111 11234789999999999999 7887777742 12200 0
Q ss_pred ------hhcCCCCcccchHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHH
Q 007845 223 ------EALKPVWAPYYTIHKILAGLLDQYTFAD---NTQALKMTKWMVEYFYNR 268 (587)
Q Consensus 223 ------~~~~~~W~p~Y~~hkl~~Glv~~y~~tG---~~kaL~va~r~ad~~~~~ 268 (587)
...--...--+|-++.+++|..+..... ++++-+.+.|..+|+.+.
T Consensus 435 ~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 435 NPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred ChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 0000011124566788888876643322 234456677888888764
No 88
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=31.85 E-value=1e+02 Score=34.35 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCC-CcccchhhhHHHHH-HHHHH
Q 007845 340 IPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGT-ENEESCTTYNMLKV-SRHLF 417 (587)
Q Consensus 340 ip~~~G~a~~y~~TGD~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~-~~~ETCas~~~~~l-~~~Lf 417 (587)
|-++-|+...|-++|++-|+..|..+=|.+.....-+++--=++=..+... +..+. ...-+-|-+..+++ -+.|-
T Consensus 178 IRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~---A~~p~~~~~SStaEvttiQlEfr~Ls 254 (546)
T KOG2431|consen 178 IRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGT---AHPPRWTGDSSTAEVTTIQLEFRYLS 254 (546)
T ss_pred HHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCc---ccCCCCCCccchhhheeeeeeHHHHH
Confidence 778889999999999999999999998887766555554332211111100 00111 12223333444444 36688
Q ss_pred hccCCCchHHHHHHHHhhhhhc--cCCCCCCCeEEEecCC
Q 007845 418 RWTKEMVYADYYERALTNGVLS--IQRGTEPGVMIYMLPL 455 (587)
Q Consensus 418 ~~tgd~~YaD~~EraLYN~iLa--~~s~~d~g~~~Y~nPL 455 (587)
++|||++|-+..|++.= +|.. .-.. ||=+-+|.||-
T Consensus 255 ~ltgd~kY~~~a~kv~e-hih~~~~~~~-dGLvPi~in~~ 292 (546)
T KOG2431|consen 255 RLTGDPKYEELAEKVTE-HIHGLGKKKH-DGLVPIFINPN 292 (546)
T ss_pred hhcCCchHHHHHHHHHH-HHhccCcccc-CCeeeEEEcCC
Confidence 99999999999999752 2222 2222 45567888884
No 89
>PLN02171 endoglucanase
Probab=29.67 E-value=2e+02 Score=33.78 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhC--C----hhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHH
Q 007845 342 VVIGSQMRYEVTG--D----PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRH 415 (587)
Q Consensus 342 ~~~G~a~~y~~TG--D----~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~ 415 (587)
.++.+|..+++-. | .+++++|+.+|+...+++..-..++.....|-.+. +.+ .=+++.-+-.
T Consensus 181 ~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~-------s~y-----~DEl~WAAaw 248 (629)
T PLN02171 181 TAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSV-------SGY-----GDELLWAAAW 248 (629)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCC-------CCc-----cHHHHHHHHH
Confidence 3344454444433 4 45799999999999887743222222222221110 111 2456666778
Q ss_pred HHhccCCCchHHHHHHH
Q 007845 416 LFRWTKEMVYADYYERA 432 (587)
Q Consensus 416 Lf~~tgd~~YaD~~Era 432 (587)
|++.|||.+|.|+++..
T Consensus 249 Ly~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 249 LYQATNNQYYLDYLGNN 265 (629)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 99999999999998763
No 90
>PLN02340 endoglucanase
Probab=28.13 E-value=2.1e+02 Score=33.51 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHHH
Q 007845 356 PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA 432 (587)
Q Consensus 356 ~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~Era 432 (587)
+++|++|+.+|+...+++..-..++...+.| |+.+--.=++..=+-.|++.|||.+|.++++..
T Consensus 201 ~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~~~-------------Y~ss~~~DEl~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 201 DLLLVHAKQLFSFADKFRGLYDDSIQNAKKF-------------YTSSGYSDELLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCccccC-------------CCCCCcchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3569999999999988774222222111211 333333356666677899999999999998764
No 91
>PF03750 DUF310: Protein of unknown function (DUF310); InterPro: IPR010149 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the C-terminal domain of a minor family of CRISPR-associated proteins. These proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.
Probab=25.45 E-value=1.3e+02 Score=27.32 Aligned_cols=18 Identities=6% Similarity=0.194 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 007845 235 IHKILAGLLDQYTFADNT 252 (587)
Q Consensus 235 ~hkl~~Glv~~y~~tG~~ 252 (587)
..++|+|+|+||.+-|.+
T Consensus 101 F~~~fEAiVAYhK~yggk 118 (119)
T PF03750_consen 101 FCKFFEAIVAYHKYYGGK 118 (119)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 456899999999987754
No 92
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=25.13 E-value=2.1e+02 Score=32.96 Aligned_cols=197 Identities=19% Similarity=0.175 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCC------------chHHHHHHHHHHHHHHHhhhhcccchhhh---hhcccccccC-----ChH---
Q 007845 237 KILAGLLDQYTFADN------------TQALKMTKWMVEYFYNRVQNVITKYSVER---HWNSLNEETG-----GMN--- 293 (587)
Q Consensus 237 kl~~Glv~~y~~tG~------------~kaL~va~r~ad~~~~~~~~~~~~~~~~~---~~~~l~~e~G-----G~~--- 293 (587)
.++-||+.+|.++.+ -.+|.+|..+|+-+.-.|... ..++..+ ...+...|+. |+-
T Consensus 124 RVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLLPAF~T~-TGiPy~~vNLk~GV~~~Et~~tctAg~gsll 202 (622)
T KOG2429|consen 124 RVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLLPAFETP-TGIPYGRVNLKYGVDKGETTETCTAGAGSLL 202 (622)
T ss_pred hhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhcccccCC-CCCCcceeehhcCCCCCCCcceeccccccee
Confidence 366788888888822 258899999988776555431 1111111 0000001100 110
Q ss_pred HHHHHHHHhcCChHHHHHhhhccccc-----cchhhhhcCCCCCCCcccchhhHHHH-------HHHHHHHhCChhHHHH
Q 007845 294 DVLYRLYTITQDPKHLLLAHLFDKPC-----FLGLLAVQADDISGFHANTHIPVVIG-------SQMRYEVTGDPLYKVT 361 (587)
Q Consensus 294 eaL~~LY~~TGd~ryL~lA~~F~~~~-----~~~pla~~~d~l~~~HAn~~ip~~~G-------~a~~y~~TGD~~yl~A 361 (587)
--+--|=++|||++|=+.|++-.+.- -.+-+-...|+..+......--+-+| +.+-|-.-||++|++.
T Consensus 203 lEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lem 282 (622)
T KOG2429|consen 203 LEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEM 282 (622)
T ss_pred eehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHH
Confidence 01122667799999999998764421 11222222233222211000001122 2345666799999876
Q ss_pred HHHHHHHH----HhcCce-----eeccCCC-----CCCCCCC-----Ccccc----------------cCCCC-------
Q 007845 362 GTFFMDIV----NASHGY-----ATGGTSA-----GEFWSDP-----KRLAS----------------TLGTE------- 399 (587)
Q Consensus 362 ~~~~w~~v----~~~~~y-----~TGG~g~-----~E~f~~~-----~~L~~----------------~l~~~------- 399 (587)
-......+ .+..-| .+|.++. .|+|-+. +++.+ .+|..
T Consensus 283 f~ea~~ai~~y~r~~~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~~vwkkyG~lPEryN~~~~~ 362 (622)
T KOG2429|consen 283 FNEAYEAIQKYTRKGPWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGFLPERYNLATQE 362 (622)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCceehHHHhhHHhhccchhhhhcchHHHHHHHHHHHHHHHHcCCCcccccccCCC
Confidence 55555444 333444 3455541 2333221 01000 11111
Q ss_pred cccchhh----hHHHHHHHHHHhccCCCchHHHHHHHHh
Q 007845 400 NEESCTT----YNMLKVSRHLFRWTKEMVYADYYERALT 434 (587)
Q Consensus 400 ~~ETCas----~~~~~l~~~Lf~~tgd~~YaD~~EraLY 434 (587)
-.+.=.. -+++-++-.|++.|+|+.|.++=|..+=
T Consensus 363 ~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~ 401 (622)
T KOG2429|consen 363 PPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLK 401 (622)
T ss_pred CCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1122222 3678888999999999999998776653
No 93
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=23.67 E-value=3.4e+02 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCcccccC
Q 007845 186 VTLKEKMTAVVSALSECQNKMGSGYLSAF 214 (587)
Q Consensus 186 ~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~ 214 (587)
+.+.+..+++|+.|.+||. +||.++.-
T Consensus 96 ~~i~~~~~~~~~~i~~~q~--~dGgf~~~ 122 (287)
T cd02894 96 NKIDENKEKIAKFIKGLQN--EDGSFSGD 122 (287)
T ss_pred hhccHHHHHHHHHHHHHcC--CCCCeecC
Confidence 3444457889999999999 88877653
No 94
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=23.57 E-value=2.7e+02 Score=32.57 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHN--VTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQY 246 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D--~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y 246 (587)
.+.-|+|++......++ .++++.+++.|+.|.++|+ +||-... .|...|+.+.. .++.+..
T Consensus 453 Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~--~DGsW~g--------------~wg~~~~Y~T~-~al~AL~ 515 (634)
T cd02892 453 TGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQE--PDGSWYG--------------RWGVCYIYGTW-FALEALA 515 (634)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccC--CCCCccc--------------cCCCccHHHHH-HHHHHHH
Confidence 46667777654333222 2567889999999999999 6762211 23333333322 1222222
Q ss_pred HHcCCc-hHHHHHHHHHHHHHHH
Q 007845 247 TFADNT-QALKMTKWMVEYFYNR 268 (587)
Q Consensus 247 ~~tG~~-kaL~va~r~ad~~~~~ 268 (587)
.+|.. .--+.+.|.++|+.+.
T Consensus 516 -~~G~~~~~~~~i~~a~~~L~s~ 537 (634)
T cd02892 516 -AAGEDYENSPYIRKACDFLLSK 537 (634)
T ss_pred -HhCCcccCcHHHHHHHHHHHhc
Confidence 34654 3345677788888864
No 95
>PLN02909 Endoglucanase
Probab=23.29 E-value=2.6e+02 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHHHHhccCCCchHHHHHH
Q 007845 356 PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYER 431 (587)
Q Consensus 356 ~~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~Lf~~tgd~~YaD~~Er 431 (587)
.++|++|+.+|+...+++....+. +.|-... ..| .=+++.-+-.|++.|||.+|.|++..
T Consensus 205 ~~lL~~Ak~~y~fA~~~~g~y~~~----~~~y~s~-------s~y-----~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 205 RRLLNKAKLLFKFAKAHKGTYDGE----CPFYCSY-------SGY-----NDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCC----CCccccC-------CCc-----chHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 357999999999998877532221 1121100 122 13566666779999999999998875
No 96
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=22.80 E-value=3.5e+02 Score=31.79 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHhhccCCCcccccCCchhhhhhhhcCCCCcccchHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTH---NVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQ 245 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~---D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~ 245 (587)
.++-|+|++......+ .+++.+.+++.|+.|.+.|. +||-... .|.. ...|.....++||.+
T Consensus 453 Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~--~dGsW~g----~Wg~--------~~~Y~T~~al~aL~~- 517 (634)
T TIGR03463 453 TSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQR--EDGSFPG----SWGV--------CFTYGTFHGVMGLRA- 517 (634)
T ss_pred HHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcC--CCCCccc----cCCC--------CCcHHHHHHHHHHHH-
Confidence 5777888777654333 25677889999999999999 7764422 1210 123444555556643
Q ss_pred HHHcCCchHHHHHHHHHHHHHHH
Q 007845 246 YTFADNTQALKMTKWMVEYFYNR 268 (587)
Q Consensus 246 y~~tG~~kaL~va~r~ad~~~~~ 268 (587)
.|.+.--+.+.|.++|+.+.
T Consensus 518 ---~G~~~~~~~i~rA~~~Ll~~ 537 (634)
T TIGR03463 518 ---AGASPDDMALQRAAAWLRSY 537 (634)
T ss_pred ---cCCCcCcHHHHHHHHHHHHc
Confidence 45543347778888998864
No 97
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=22.21 E-value=82 Score=27.05 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCccc
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYL 211 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGYL 211 (587)
+.....+++.+.....++. .+.+++.|+.|..+|. +||=+
T Consensus 72 ~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~--~dGg~ 111 (113)
T PF13249_consen 72 VYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQN--PDGGW 111 (113)
T ss_dssp HHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB---TTSSB
T ss_pred HHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcC--CCCCC
Confidence 5555555554444444333 7778889999999999 78743
No 98
>TIGR03515 GldC gliding motility-associated protein GldC. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldC do not abolish the gliding phenotype but do impair it. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.73 E-value=1.9e+02 Score=26.12 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHHh
Q 007845 236 HKILAGLLD-QYTFADNTQALKMTKWMVEYFYNRV 269 (587)
Q Consensus 236 hkl~~Glv~-~y~~tG~~kaL~va~r~ad~~~~~~ 269 (587)
|..+.|+-| +.++||+++.-+-++.+|||+.+.+
T Consensus 70 ~qtl~~maDT~~rAT~d~kma~~m~dfcd~faekl 104 (108)
T TIGR03515 70 IETLGGMADTFLNATGDEKMAEDIKDLCDRLAQKL 104 (108)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 556667665 4569999999999999999998764
No 99
>PLN02613 endoglucanase
Probab=21.73 E-value=2.9e+02 Score=31.54 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhC--Ch----hHHHHHHHHHHHHHhcCceeeccCCCCCCCCCCCcccccCCCCcccchhhhHHHHHHHH
Q 007845 342 VVIGSQMRYEVTG--DP----LYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRH 415 (587)
Q Consensus 342 ~~~G~a~~y~~TG--D~----~yl~A~~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCas~~~~~l~~~ 415 (587)
.++.+|..+++-. |+ ++|++|+.+|+...+++.. .+....|-... ..+ .=+++.-+-.
T Consensus 177 ~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~----y~~~~~~y~s~-------s~~-----~DEl~WAAaw 240 (498)
T PLN02613 177 AAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKYRGS----YQASCPFYCSY-------SGY-----QDELLWAAAW 240 (498)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCCCCccccc-------Ccc-----chHHHHHHHH
Confidence 4445555554433 43 5699999999998876521 11111110000 111 1245555677
Q ss_pred HHhccCCCchHHHHHHH
Q 007845 416 LFRWTKEMVYADYYERA 432 (587)
Q Consensus 416 Lf~~tgd~~YaD~~Era 432 (587)
|++.|||.+|.++++..
T Consensus 241 Ly~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 241 LYKATGEKKYLNYVISN 257 (498)
T ss_pred HHHHhCCHHHHHHHHhc
Confidence 99999999999999764
No 100
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=21.07 E-value=3.2e+02 Score=32.15 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=48.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccCCCcc-cccCCchhhhhhhhcCCCCcccchHHHHHHHHHHHHH
Q 007845 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGY-LSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~DGY-L~t~p~~~~~~l~~~~~~W~p~Y~~hkl~~Glv~~y~ 247 (587)
.++-|+|++.. ++..-...+++-|+.|.+.|+ +||. ++.+.. ...|.....+.||.+
T Consensus 454 Ta~~l~al~~~----g~~~~~~~i~rav~~L~~~Q~--~dG~W~g~wg~-------------~~~Y~T~~al~aL~~--- 511 (635)
T TIGR01507 454 TARVLECLGSF----GYDDAWPVIERAVEYLKREQE--PDGSWFGRWGV-------------NYLYGTGAVLSALKA--- 511 (635)
T ss_pred HHHHHHHHHHh----CCCchhHHHHHHHHHHHHccC--CCCCCccCCCC-------------ccccHHHHHHHHHHH---
Confidence 45666666543 222227789999999999999 7875 343210 134566666677753
Q ss_pred HcCCchHHHHHHHHHHHHHHH
Q 007845 248 FADNTQALKMTKWMVEYFYNR 268 (587)
Q Consensus 248 ~tG~~kaL~va~r~ad~~~~~ 268 (587)
.|-+..-+.+.|-.+|+.+.
T Consensus 512 -~g~~~~~~~i~rAv~wL~~~ 531 (635)
T TIGR01507 512 -VGIDTREPYIQKALAWLESH 531 (635)
T ss_pred -cCCCcccHHHHHHHHHHHHh
Confidence 45444456777888888764
No 101
>PLN03012 Camelliol C synthase
Probab=20.48 E-value=1.4e+03 Score=27.74 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHhhccCCCcccccCCch---hhhhhhhcCC---CC--cccc--h
Q 007845 169 VGHYLSASAHMWASTH----NVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QFDRFEALKP---VW--APYY--T 234 (587)
Q Consensus 169 ~gkwLeA~a~~~a~t~----D~~L~~k~d~~Vd~l~~~Q~~~~DGYL~t~p~~---~~~~l~~~~~---~W--~p~Y--~ 234 (587)
.+.=|.|+..+..... ++.-.+++.+-|+.|+.-|. .||=+++|-.. .|-+.-.... .+ -+-| |
T Consensus 488 TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn--~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dc 565 (759)
T PLN03012 488 TAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQS--KNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNEC 565 (759)
T ss_pred cHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccC--CCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccH
Confidence 4556665433332222 34456899999999999999 78877777321 1211000000 00 0222 4
Q ss_pred HHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHH
Q 007845 235 IHKILAGLLDQYTFADN---TQALKMTKWMVEYFYNR 268 (587)
Q Consensus 235 ~hkl~~Glv~~y~~tG~---~kaL~va~r~ad~~~~~ 268 (587)
.+..+++|...-..-.+ ++.-+.+.|..+|+.+.
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~ 602 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENI 602 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHh
Confidence 67777777654332222 23445667777888754
Done!