Query 007846
Match_columns 587
No_of_seqs 273 out of 2044
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk6_A 23S rRNA methyltransfer 100.0 1.9E-53 6.4E-58 430.1 20.2 255 258-572 12-268 (277)
2 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 8.6E-53 2.9E-57 424.4 22.9 261 258-576 5-266 (274)
3 1gz0_A Hypothetical tRNA/RRNA 100.0 7.1E-52 2.4E-56 413.0 22.0 239 293-571 14-252 (253)
4 1x7o_A Avirb, rRNA methyltrans 100.0 1.6E-51 5.4E-56 417.6 22.0 257 258-572 17-279 (287)
5 2i6d_A RNA methyltransferase, 100.0 3.3E-51 1.1E-55 409.0 15.9 252 257-571 3-257 (257)
6 3e5y_A TRMH family RNA methylt 100.0 2.5E-39 8.4E-44 302.4 11.2 153 394-575 4-158 (160)
7 3n4j_A RNA methyltransferase; 100.0 1.1E-38 3.7E-43 299.6 13.2 153 395-576 4-161 (165)
8 3l8u_A SMU.1707C, putative rRN 100.0 1.1E-37 3.9E-42 297.8 14.8 151 392-574 14-168 (182)
9 1v2x_A TRNA (GM18) methyltrans 100.0 4.7E-38 1.6E-42 301.9 10.0 151 393-573 20-170 (194)
10 2ha8_A TAR (HIV-1) RNA loop bi 100.0 1.1E-37 3.9E-42 297.1 12.3 154 393-576 24-180 (184)
11 1zjr_A TRNA (guanosine-2'-O-)- 100.0 2.7E-36 9.1E-41 293.7 13.4 151 394-573 24-174 (211)
12 3kty_A Probable methyltransfer 100.0 4.2E-35 1.5E-39 276.0 10.0 146 394-571 9-172 (173)
13 3ilk_A Uncharacterized tRNA/RR 100.0 2.3E-31 8E-36 265.1 10.2 143 395-571 7-160 (244)
14 3onp_A TRNA/RRNA methyltransfe 100.0 3.6E-31 1.2E-35 264.2 11.3 144 395-572 4-163 (249)
15 3ic6_A Putative methylase fami 100.0 9.7E-31 3.3E-35 258.0 9.2 147 394-572 16-195 (223)
16 3dcm_X AdoMet, uncharacterized 99.4 1.7E-13 5.8E-18 132.8 9.4 149 395-573 4-189 (192)
17 2o3a_A UPF0106 protein AF_0751 94.9 0.03 1E-06 53.5 5.6 97 412-519 24-126 (178)
18 2yy8_A ATRM56, UPF0106 protein 94.3 0.05 1.7E-06 52.8 5.6 97 412-519 21-129 (201)
19 1w41_A 50S ribosomal protein L 87.7 2.9 9.9E-05 35.6 9.1 71 292-374 16-88 (101)
20 3cpq_A 50S ribosomal protein L 87.7 3.4 0.00012 36.0 9.7 70 293-374 22-93 (110)
21 3v7e_A Ribosome-associated pro 86.4 4.3 0.00015 33.6 9.2 68 292-371 11-79 (82)
22 4a18_G RPL30; ribosome, eukary 86.0 3.8 0.00013 35.2 9.0 71 292-374 22-94 (104)
23 3j21_Z 50S ribosomal protein L 85.7 2.8 9.6E-05 35.7 7.9 71 292-374 15-87 (99)
24 3on1_A BH2414 protein; structu 85.4 4.8 0.00016 34.3 9.3 68 293-373 19-87 (101)
25 3u5e_c L32, RP73, YL38, 60S ri 83.9 4.5 0.00016 34.9 8.5 71 292-374 22-94 (105)
26 3v7q_A Probable ribosomal prot 82.7 7.8 0.00027 33.1 9.4 68 293-373 20-88 (101)
27 3iz5_f 60S ribosomal protein L 79.7 5.6 0.00019 35.0 7.7 71 292-374 26-98 (112)
28 2lbw_A H/ACA ribonucleoprotein 79.7 8.4 0.00029 34.1 8.9 71 293-374 21-92 (121)
29 2aif_A Ribosomal protein L7A; 79.1 13 0.00045 33.5 10.1 71 293-374 42-113 (135)
30 3kw2_A Probable R-RNA methyltr 78.1 21 0.00072 35.5 12.1 117 394-511 77-211 (257)
31 1vhk_A Hypothetical protein YQ 76.8 17 0.00057 36.3 11.1 113 395-510 82-218 (268)
32 1xbi_A 50S ribosomal protein L 76.4 7.9 0.00027 34.2 7.7 72 292-374 29-101 (120)
33 2fc3_A 50S ribosomal protein L 76.1 10 0.00035 33.6 8.3 71 293-374 29-100 (124)
34 1vq8_F 50S ribosomal protein L 76.0 9.3 0.00032 33.6 8.0 71 293-374 30-101 (120)
35 1rlg_A 50S ribosomal protein L 75.5 9.6 0.00033 33.4 7.9 71 293-374 28-99 (119)
36 3o85_A Ribosomal protein L7AE; 74.8 13 0.00043 33.1 8.6 72 293-375 32-104 (122)
37 2ale_A SNU13, NHP2/L7AE family 72.6 15 0.00052 33.2 8.7 70 293-373 33-103 (134)
38 2qmm_A UPF0217 protein AF_1056 69.1 14 0.00046 35.9 8.0 80 455-570 112-195 (197)
39 3aia_A UPF0217 protein MJ1640; 64.2 32 0.0011 33.7 9.5 83 455-573 123-209 (211)
40 1vhy_A Hypothetical protein HI 63.1 30 0.001 34.3 9.3 111 395-510 81-209 (257)
41 2qi2_A Pelota, cell division p 62.2 8.2 0.00028 40.1 5.3 65 293-374 266-335 (347)
42 3obw_A Protein pelota homolog; 61.9 12 0.00042 39.1 6.6 69 293-373 286-359 (364)
43 2vgn_A DOM34; translation term 61.3 21 0.00072 37.5 8.3 71 293-374 298-373 (386)
44 3mca_B Protein DOM34, elongati 61.3 17 0.00058 38.3 7.6 71 293-374 292-367 (390)
45 1x52_A Pelota homolog, CGI-17; 60.7 11 0.00038 33.7 5.2 74 293-374 39-114 (124)
46 4e8b_A Ribosomal RNA small sub 58.8 23 0.0008 34.9 7.7 110 397-511 80-207 (251)
47 3vi6_A 60S ribosomal protein L 57.0 52 0.0018 29.3 8.9 72 292-375 27-100 (125)
48 3ir9_A Peptide chain release f 53.5 25 0.00084 32.9 6.5 77 293-373 47-160 (166)
49 3oby_A Protein pelota homolog; 51.6 20 0.00069 37.3 6.1 69 293-374 266-339 (352)
50 3j15_A Protein pelota; ribosom 51.0 13 0.00045 38.6 4.6 67 293-373 281-352 (357)
51 3agk_A Peptide chain release f 49.8 24 0.00082 36.5 6.4 49 293-355 300-348 (373)
52 2qwv_A UPF0217 protein VC_A105 47.2 67 0.0023 31.5 8.6 112 405-569 86-203 (208)
53 2xzm_U Ribosomal protein L7AE 46.0 55 0.0019 29.2 7.3 61 292-363 24-85 (126)
54 2jnb_A NHP2-like protein 1; sp 44.3 15 0.00051 33.8 3.4 71 293-374 51-122 (144)
55 2zkr_f 60S ribosomal protein L 42.1 99 0.0034 31.4 9.2 64 290-364 133-197 (266)
56 3agj_B Protein pelota homolog; 40.2 27 0.00091 36.2 4.9 74 293-374 273-348 (358)
57 2egv_A UPF0088 protein AQ_165; 36.5 29 0.00099 33.8 4.2 108 396-510 73-197 (229)
58 3jyw_G 60S ribosomal protein L 35.5 40 0.0014 29.9 4.5 62 293-365 26-88 (113)
59 1dt9_A ERF1, protein (eukaryot 31.0 47 0.0016 35.1 5.1 74 293-374 301-414 (437)
60 1z85_A Hypothetical protein TM 30.8 28 0.00094 34.2 3.0 114 395-519 86-207 (234)
61 1v6z_A Hypothetical protein TT 30.1 76 0.0026 30.8 6.0 109 395-511 72-194 (228)
62 3izc_H 60S ribosomal protein R 27.4 1.7E+02 0.0057 29.6 8.0 61 293-364 132-193 (256)
63 4a17_F RPL7A, 60S ribosomal pr 23.8 3.7E+02 0.013 27.1 9.7 62 293-365 125-187 (255)
64 3j1r_A Archaeal adhesion filam 21.8 56 0.0019 22.2 2.2 13 556-568 13-25 (26)
65 3iz5_H 60S ribosomal protein L 21.7 3.5E+02 0.012 27.3 9.0 62 293-365 128-190 (258)
66 2kg4_A Growth arrest and DNA-d 21.4 1.5E+02 0.0052 28.0 6.1 66 293-364 36-105 (165)
No 1
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=1.9e-53 Score=430.08 Aligned_cols=255 Identities=20% Similarity=0.245 Sum_probs=217.8
Q ss_pred cCCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHH
Q 007846 258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK 337 (587)
Q Consensus 258 s~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~ 337 (587)
|.+||+++.|.+|. + +.| ++.+.| +|||.|+|.+||+++. .+..||++++.. +. .+
T Consensus 12 S~~n~~iK~~~~L~-~-k~R-~~~g~f--------lveG~~~V~eaL~~~~-~i~~l~~~~~~~---------~~---~~ 67 (277)
T 3nk6_A 12 NASDPAVQRIIDVT-K-HSR-ASIKTT--------LIEDTEPLMECIRAGV-QFIEVYGSSGTP---------LD---PA 67 (277)
T ss_dssp BCSSCSHHHHHHHH-H-TC-----CEE--------EEESHHHHHHHHHTTC-CEEEEEEETTSC---------CC---HH
T ss_pred CCCChHHHHHHHHh-h-hhH-hhcCCE--------EEEeHHHHHHHHhCCC-CeEEEEEeCCcc---------Cc---HH
Confidence 78999999999987 3 333 566777 5999999999999987 599999988642 11 45
Q ss_pred HHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHH
Q 007846 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAY 417 (587)
Q Consensus 338 Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~ 417 (587)
+++.+++.+++++.+++++|++|+++.+||||+|++.+++..++.++.. ...+ +||||+|+||+|+|+|+|||+
T Consensus 68 l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~l~~~~~-----~~~~-~lvLd~v~dP~NlGaI~Rta~ 141 (277)
T 3nk6_A 68 LLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAE-----RGGD-VVVLDGVKIVGNIGAIVRTSL 141 (277)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCCCHHHHHH-----HCSC-EEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCCCHHHHhc-----cCCC-EEEEEcCCCcchHHHHHHHHH
Confidence 7777888999999999999999999999999999998764444443321 1346 999999999999999999999
Q ss_pred HhCCCeEEEcc-CCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCccCCC-CCCCCCEEEE
Q 007846 418 FFGASGVVLCA-KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE-IPPGQPTILV 495 (587)
Q Consensus 418 AFGa~gVIL~~-~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~e-v~~~~p~aLV 495 (587)
+||+++||+++ +++++++|+++|+|+||+|++|++.+ |+.++++.+++.||+|||++.. +..++++ +++++|++||
T Consensus 142 a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l~~lk~~g~~v~~~~~~-~~~~~~~~~~~~~~~alv 219 (277)
T 3nk6_A 142 ALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTD-GDLGVKDLGDRADRMALV 219 (277)
T ss_dssp HTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHHHHHHHTTCCEEEECTT-CSEEGGGGGGCCSCCEEE
T ss_pred HcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHHHHHHhcCCeEEEEecC-CCcchhhhhccCCCEEEE
Confidence 99999999999 78899999999999999999999999 9999999999999999999875 4678999 9999999999
Q ss_pred EcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCcc
Q 007846 496 LGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 496 LGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~ 572 (587)
||||+.||++++++.||+.|+|||. |.++|||||||+||+|||+.||+.
T Consensus 220 ~GnE~~Gls~~~~~~~d~~v~IPm~----------------------------g~~~SLNvsvAaaI~lye~~rq~~ 268 (277)
T 3nk6_A 220 FGSEKGGPSGLFQEASAGTVSIPML----------------------------SSTESLNVSVSVGIALHERSARNF 268 (277)
T ss_dssp EEBTTTBSCHHHHHHCSCEEECCCS----------------------------STTCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCCCCCCHHHHHhCCeEEEECCC----------------------------CCCCCchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999995 379999999999999999999975
No 2
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=8.6e-53 Score=424.44 Aligned_cols=261 Identities=22% Similarity=0.232 Sum_probs=220.9
Q ss_pred cCCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHH
Q 007846 258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK 337 (587)
Q Consensus 258 s~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~ 337 (587)
+.+||+++.|.+|.+. +.| ++.+.| +|||.|+|.+||+++. .+..||++++.. + ..+.+
T Consensus 5 S~~n~~ik~~~~L~~k-k~R-~~~g~f--------~veG~~~v~eal~~~~-~i~~l~~~~~~~---------~-~~~~~ 63 (274)
T 1ipa_A 5 STANPRIKELARLLER-KHR-DSQRRF--------LIEGAREIERALQAGI-ELEQALVWEGGL---------N-PEEQQ 63 (274)
T ss_dssp CTTSHHHHHHHGGGSH-HHH-HHHTEE--------EEESHHHHHHHHHTTC-CEEEEEEETTCC---------C-HHHHH
T ss_pred CCCCHHHHHHHHHhcc-ccc-cccCeE--------EEEeHHHHHHHHhCCC-CeEEEEEEcCcc---------c-chHHH
Confidence 6789999999998653 222 566777 5999999999999986 599999987632 1 12456
Q ss_pred HHHHHHhcC-CcEEEcCHHHHhhhhCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHH
Q 007846 338 VLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSA 416 (587)
Q Consensus 338 Il~la~e~g-i~V~~Vs~~~Ld~Lsg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA 416 (587)
+++.+++.+ ++++.+++++|++|+++.+||||+|++.++. ..+.++. ....+++|+||+|+||+|+|+|+|||
T Consensus 64 l~~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~-~~l~~~~-----~~~~~~~lvLd~i~dp~NlGaI~Rta 137 (274)
T 1ipa_A 64 VYAALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPE-RTLEEYR-----PSPDALILVAVGLEKPGNLGAVLRSA 137 (274)
T ss_dssp HHHCC-----CEEEEECHHHHHHHCCSSSCCSEEEEEECCC-CCCCCCC-----CCTTCEEEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccEEEeCHHHHHHHhCCCCCCeEEEEEeCCC-CCHHHHh-----ccCCCeEEEEeCCCCcchHHHHHHHH
Confidence 666666778 9999999999999999999999999998654 3333321 12356999999999999999999999
Q ss_pred HHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEE
Q 007846 417 YFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVL 496 (587)
Q Consensus 417 ~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVL 496 (587)
++||+++|+++++ +++++|+++|+|+|++|++|++. .|+.++++.++++||+|||++.. +..++.++++++|++|||
T Consensus 138 ~a~G~~~vil~~~-~~~~~~~v~ras~Ga~~~l~~~~-~~l~~~l~~l~~~g~~i~~~~~~-~~~~~~~~~~~~~~alv~ 214 (274)
T 1ipa_A 138 DAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA-ASESEVLDWIKQHNLPLVATTPH-AEALYWEANLRPPVAIAV 214 (274)
T ss_dssp HHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE-ECHHHHHHHHHHTTCCEEEECTT-CSSBGGGSCCCSSEEEEE
T ss_pred HhhccCEEEEeCC-cCcCCHHHHHHcCChhhcceeEe-CCHHHHHHHHHHcCCEEEEEeCC-CCcchhhcCCCCCEEEEE
Confidence 9999999999998 99999999999999999999998 99999999999999999999875 456888999999999999
Q ss_pred cCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCccCCCC
Q 007846 497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNS 576 (587)
Q Consensus 497 GnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~~~~~ 576 (587)
|||+.||++++++.||+.|+|||. |.++|||||||+||+|||+.||+.....
T Consensus 215 G~E~~Gls~~~~~~~d~~v~IPm~----------------------------g~~~SLNvsvAaaI~lye~~rq~~~~~~ 266 (274)
T 1ipa_A 215 GPEHEGLRAAWLEAAQTQVRIPMQ----------------------------GQADSLNVSVSAALLLYEALRQRLLRDR 266 (274)
T ss_dssp CCTTSCCCHHHHHHCSEEEBCCCC----------------------------SSCCCCCHHHHHHHHHHHHHHHHTC---
T ss_pred CCCCcCCCHHHHHhCCeEEEECCC----------------------------CCCCceeHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999995 3799999999999999999998765443
No 3
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=7.1e-52 Score=413.01 Aligned_cols=239 Identities=28% Similarity=0.408 Sum_probs=209.8
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~ 372 (587)
+|||.|+|.+||+++++.+..||++++.. .+.+.+|++++++.+++++.+++++|++|+++.+||||+|+
T Consensus 14 ~veG~~~V~eal~~~~~~i~~l~~~~~~~----------~~~~~~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~ 83 (253)
T 1gz0_A 14 MIYGIHAVQALLERAPERFQEVFILKGRE----------DKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIAR 83 (253)
T ss_dssp EEESHHHHHHHHHSCGGGEEEEEEESSCC----------CTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEE
T ss_pred EEEEHHHHHHHHhcCCCCeEEEEEECCcc----------chhHHHHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEE
Confidence 69999999999999865699999987632 11245677788888999999999999999999999999999
Q ss_pred ecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEE
Q 007846 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR 452 (587)
Q Consensus 373 a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~ 452 (587)
+.++++.++.++..... ....+++|+||+|+||+|+|+|+|||++||+++||++.+++++++|+++|+|+|++|++|+.
T Consensus 84 ~~~~~~~~~~~l~~~~~-~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~ 162 (253)
T 1gz0_A 84 VKPGRQYQENDLPDLIA-SLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLI 162 (253)
T ss_dssp ECCCCCCCGGGHHHHHH-TCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEE
T ss_pred EeccccCcHHHHHHHHh-ccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhcchheEEEEE
Confidence 98766543333322111 11257999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccc
Q 007846 453 YCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532 (587)
Q Consensus 453 ~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~ 532 (587)
.+.|+.++++.+++.|++|+|++.. +..++.++++++|++||||||+.||++++++.||++|+|||.
T Consensus 163 ~~~~~~~~l~~l~~~g~~i~~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~------------ 229 (253)
T 1gz0_A 163 RVTNLARTMRMLQEENIWIVGTAGE-ADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMA------------ 229 (253)
T ss_dssp EESCHHHHHHHHHHTTCEEEEECTT-CSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCS------------
T ss_pred EeCCHHHHHHHHHHCCCEEEEEECC-CCcchhhccCCCCEEEEECCCCcCcCHHHHHhCCEEEEECCC------------
Confidence 9999999999999999999998854 567899999999999999999999999999999999999995
Q ss_pred cccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCc
Q 007846 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 533 ~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
|.++|||||||+||+|||+.||+
T Consensus 230 ----------------g~~~SLNvsvAaaI~lye~~rq~ 252 (253)
T 1gz0_A 230 ----------------GSVSSLNVSVATGICLFEAVRQR 252 (253)
T ss_dssp ----------------SSSCCCCHHHHHHHHHHHHHHHT
T ss_pred ----------------CCCCceeHHHHHHHHHHHHHHhh
Confidence 37999999999999999999986
No 4
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=1.6e-51 Score=417.63 Aligned_cols=257 Identities=20% Similarity=0.225 Sum_probs=220.4
Q ss_pred cCCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHH
Q 007846 258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK 337 (587)
Q Consensus 258 s~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~ 337 (587)
+ +||+++.|.+|.+.++.| ++.+.| +|||.|+|.+||+++. .+..||++++.. +++.+.+
T Consensus 17 S-~n~~ik~~~~L~~~~k~R-~~~g~f--------~veG~~~V~eal~~~~-~i~~l~~~~~~~---------~~~~~~~ 76 (287)
T 1x7o_A 17 S-RNARFQQWQALLGNRNKR-TRAGEF--------LVMGVRPISLAVEHGW-PVRTLLYDGQRE---------LSKWARE 76 (287)
T ss_dssp --CCHHHHHHHHTTSCHHHH-HHHTEE--------EEESHHHHHHHHHTTC-CEEEEEEESSCC---------CCHHHHH
T ss_pred C-CCHHHHHHHHHhhchhhH-hhcCcE--------EEEeHHHHHHHHhCCC-CeEEEEEecCcc---------cchhHHH
Confidence 6 999999999986431223 566777 5999999999999984 599999987632 1122344
Q ss_pred HHHHHHhcCCcEEEcCHHHHhhhhCCC-CCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHH
Q 007846 338 VLKMAENMGISIKETSKHDLNMVVGNR-PHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSA 416 (587)
Q Consensus 338 Il~la~e~gi~V~~Vs~~~Ld~Lsg~~-~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA 416 (587)
|++ ..+++++.+++++|++|+++. +||||+|++.++. ..+.++. ....+++|+||+|+||+|+|+|+|||
T Consensus 77 l~~---~~~~~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~-~~l~~~~-----~~~~~l~lvLd~i~dP~NlGaIiRta 147 (287)
T 1x7o_A 77 LLR---TVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPA-DDLDRIP-----VREDFLGVLFDRPTSPGNIGSIIRSA 147 (287)
T ss_dssp HHH---HSCSEEEEECHHHHTTSSCSSSCCCSEEEEEECCC-CCGGGSC-----CCTTCEEEEEESCSCHHHHHHHHHHH
T ss_pred HHH---HcCCcEEEeCHHHHHHHhCCCCCCCcEEEEEecCC-CCHHHHh-----cccCCEEEEEeCCCCcchHHHHHHHh
Confidence 433 345899999999999999999 9999999998654 3333321 11257899999999999999999999
Q ss_pred HHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHh---hhcCcE--EEEEecCCCCccCCCCCCCCC
Q 007846 417 YFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS---AENGWR--VLGGSVSSKAVPLNEIPPGQP 491 (587)
Q Consensus 417 ~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~L---ke~G~~--Vvgts~~~~a~~L~ev~~~~p 491 (587)
++||+++||++.+++++++++++|+|+|++|++|++.+.|+.++++.+ ++.||+ |||++.. +..+++++++++|
T Consensus 148 ~a~G~~~vil~~~~~d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l~~l~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~ 226 (287)
T 1x7o_A 148 DALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEH-GDCDVFDFDFTQP 226 (287)
T ss_dssp HHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESSHHHHHHHHHHHHHHTCCCEEEEECTT-CSEEGGGSCTTSC
T ss_pred HhcccCEEEEECCCcCccCHHHHhhhcCcceeeeEEEeCCHHHHHHHHHHHHhcCCceEEEEEECC-CCccHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999 999999 9999875 5678999999999
Q ss_pred EEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCc
Q 007846 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 492 ~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
++||||||+.||++++++.||++|+|||. |.++|||||||+||+|||+.+|+
T Consensus 227 ~alV~GnE~~Gls~~~~~~~d~~v~IPm~----------------------------g~~~SLNvavAaaI~lye~~rq~ 278 (287)
T 1x7o_A 227 TLLLIGNETAGLSNAWRTLCDYTVSIPMA----------------------------GSASSLNAANAATAILYEAVRQR 278 (287)
T ss_dssp EEEEECBTTTBSCHHHHHHCSEEEECCCS----------------------------SSSCCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHhCCeEEEECCC----------------------------CCCCceEHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999995 37999999999999999999988
Q ss_pred c
Q 007846 572 V 572 (587)
Q Consensus 572 ~ 572 (587)
.
T Consensus 279 ~ 279 (287)
T 1x7o_A 279 I 279 (287)
T ss_dssp S
T ss_pred c
Confidence 6
No 5
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.3e-51 Score=409.01 Aligned_cols=252 Identities=23% Similarity=0.212 Sum_probs=211.7
Q ss_pred ccCCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHH
Q 007846 257 ARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYE 336 (587)
Q Consensus 257 ~s~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~ 336 (587)
.+.+||+++.|.+|.+. |..++.+.| +|||.|+|.+||++ . .+..||++++.. .
T Consensus 3 ~s~~n~~ik~~~~L~~~--k~R~~~g~f--------~veG~~~v~eal~~-~-~i~~l~~~~~~~--------------~ 56 (257)
T 2i6d_A 3 AMLSANQIKFLRSLRER--KYRLREQAF--------AVEGPKLVGEMLPF-Y-RCRMLVGTAAML--------------R 56 (257)
T ss_dssp CCCCHHHHHHHHHTTSH--HHHHHHTEE--------EEESHHHHHHHGGG-S-CEEEEEEEHHHH--------------H
T ss_pred CCcCCHHHHHHHHHhcc--cchhhcCcE--------EEEcHHHHHHHHhc-C-CcCEEEEEcCch--------------H
Confidence 36889999999998643 222566777 59999999999998 4 599999986421 1
Q ss_pred HHHHHHHhcCCcEEEcCH-HHHhhhhCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHH
Q 007846 337 KVLKMAENMGISIKETSK-HDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415 (587)
Q Consensus 337 ~Il~la~e~gi~V~~Vs~-~~Ld~Lsg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRS 415 (587)
++++ +.+++++.+++ ++|++|+++.+||||+|++.++. ..+.++ .+++|+||+|+||+|+|+|+||
T Consensus 57 ~l~~---~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~-~~l~~~---------~~~~lvLd~v~dp~NlGaI~Rt 123 (257)
T 2i6d_A 57 AVST---PHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPA-EPEPVV---------EGLTLLLDGVQDPGNVGTILRT 123 (257)
T ss_dssp TSCC---CTTCEEEEECTTCCGGGTCCSSSCCSEEEEEECCC-CCCCCC---------CSEEEEEESCCCHHHHHHHHHH
T ss_pred HHHH---hcCCCEEEeChHHHHHHHhcCCCCCeEEEEEECCC-CChHHh---------CCeEEEEECCCCcchHHHHHHH
Confidence 1222 45789999999 99999999999999999987643 222221 2689999999999999999999
Q ss_pred HHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCccCCCC--CCCCCEE
Q 007846 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEI--PPGQPTI 493 (587)
Q Consensus 416 A~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev--~~~~p~a 493 (587)
|++||+++|+++.+++++++|+++|+|+|++|++|++...|+.++++.++++||+|||++.. +..++.++ ++++|++
T Consensus 124 a~a~G~~~vil~~~~~~~~~~~v~ras~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~~~~~-~~~~~~~~~~~~~~~~a 202 (257)
T 2i6d_A 124 ADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLD-GQSLYEAPLPNFTEPAI 202 (257)
T ss_dssp HHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHHHHHHTTCCEEEEEEE-EEETTTSCCCCTTSCEE
T ss_pred HHHhCCCEEEEcCCCCCcCCHHHheecCCcceeeeEEEeCCHHHHHHHHHHCCCEEEEEECC-CCccHHHhhhCcCCCEE
Confidence 99999999999999999999999999999999999985599999999999999999999875 45678888 8999999
Q ss_pred EEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCc
Q 007846 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 494 LVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
||||||+.||++++++.||+.|+|||..+ .| .|.++|||||||+||+|||+.||+
T Consensus 203 lv~GnE~~Gls~~~~~~~d~~v~IPm~~~----~~-------------------~g~~~SLNvsvAaaI~lye~~rq~ 257 (257)
T 2i6d_A 203 LVLGSEGRGISPEVAAEITDRLTIPASGL----SV-------------------KGHTESLNVAIATAILCSEWRRRS 257 (257)
T ss_dssp EEEEBTTTBSCHHHHTTCSEEEECCCCSS----CC-----------------------CCCCHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCCCHHHHHhCCeEEEECCCcC----CC-------------------CCCCCChhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999400 00 037999999999999999999874
No 6
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=100.00 E-value=2.5e-39 Score=302.39 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=142.3
Q ss_pred CcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEE
Q 007846 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 394 ~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvg 473 (587)
++++||||+|+||+|+|+|+|||++||++.||+.+.+.+++++++.|+|+|+++++|+..++|+.++++.++++||+||+
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~g~~i~~ 83 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFA 83 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEEEECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhCCCEEEE
Confidence 35899999999999999999999999999999888777888999999999999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHh--CCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCC
Q 007846 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS--CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551 (587)
Q Consensus 474 ts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~--cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~V 551 (587)
++.. +..++.++++++|++||||||++||++++++. ||++|+|||. +.+
T Consensus 84 ~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~----------------------------g~~ 134 (160)
T 3e5y_A 84 FTTR-GSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMR----------------------------PGN 134 (160)
T ss_dssp ECST-TCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCC----------------------------SSS
T ss_pred EecC-CCccccccCCCCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCC----------------------------CCC
Confidence 9875 56789999999999999999999999999999 9999999995 379
Q ss_pred CcccHHHHHHHHHHHHHcCccCCC
Q 007846 552 ESLNVSVAAGVLLHHLVGHQVSNN 575 (587)
Q Consensus 552 eSLNVSVAAgIlLYEl~rqr~~~~ 575 (587)
+|||||||++|+|||+.||+..+.
T Consensus 135 ~SLNvsvAaaI~lye~~rq~~~~~ 158 (160)
T 3e5y_A 135 RSLNLSNTVAVVVFEAWRQAGFEG 158 (160)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTTT
T ss_pred CeehHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999987653
No 7
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=1.1e-38 Score=299.64 Aligned_cols=153 Identities=19% Similarity=0.166 Sum_probs=142.6
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhh---cCcEE
Q 007846 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE---NGWRV 471 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke---~G~~V 471 (587)
+++||||+|+||+|+|+|+|||++||++.||+.+.+.+++++++.|+|+|+++++|+..++|+.++++.+++ .|++|
T Consensus 4 ~~~vvL~~~~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~~i 83 (165)
T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARL 83 (165)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTTE
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCeEEEECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccCCCEE
Confidence 689999999999999999999999999999988877788889999999999999999999999999999998 89999
Q ss_pred EEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHh--CCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCC
Q 007846 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS--CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549 (587)
Q Consensus 472 vgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~--cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g 549 (587)
+|++.. +..++.++++++|++||||||+.||++++++. ||++|+|||. +
T Consensus 84 ~~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~----------------------------g 134 (165)
T 3n4j_A 84 FALTTK-GTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQ----------------------------A 134 (165)
T ss_dssp EEECTT-CSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCC----------------------------T
T ss_pred EEEEcC-CCcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCC----------------------------C
Confidence 999864 56789999999999999999999999999999 8999999995 3
Q ss_pred CCCcccHHHHHHHHHHHHHcCccCCCC
Q 007846 550 AVESLNVSVAAGVLLHHLVGHQVSNNS 576 (587)
Q Consensus 550 ~VeSLNVSVAAgIlLYEl~rqr~~~~~ 576 (587)
.++|||||||++|+|||+.||+....+
T Consensus 135 ~~~SLNvavAaaI~lye~~rq~~~~~~ 161 (165)
T 3n4j_A 135 DSRSMNLSNAVSVVVYEAWRQLGYPGA 161 (165)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCceeeHHHHHHHHHHHHHHhcccccc
Confidence 799999999999999999999876644
No 8
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=100.00 E-value=1.1e-37 Score=297.80 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=132.0
Q ss_pred cCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEE
Q 007846 392 DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471 (587)
Q Consensus 392 ~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~V 471 (587)
.+.+++||||+|+||+|+|+|+|||++||++.||+.+.+.+++++++.|+|+|+++++|+..++|+.++++.+ |+++
T Consensus 14 ~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l~~l---g~~i 90 (182)
T 3l8u_A 14 TLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNIC---SGKL 90 (182)
T ss_dssp -CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCTTTC------CCC-CCEEEESSHHHHHHHC---CSEE
T ss_pred CCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHHHHC---CCEE
Confidence 4578999999999999999999999999999999988777888999999999999999999999999999888 8999
Q ss_pred EEEecCCCCccCCCCCCCC--CEEEEEcCCCCCccHHHHH-hCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccC
Q 007846 472 LGGSVSSKAVPLNEIPPGQ--PTILVLGSEGTGLRPLVER-SCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548 (587)
Q Consensus 472 vgts~~~~a~~L~ev~~~~--p~aLVLGnEg~GLS~~vl~-~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~ 548 (587)
++++.. +..++.+++++. |++||||||+.||++++++ .||.+|+|||.
T Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~---------------------------- 141 (182)
T 3l8u_A 91 HLITKF-ANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVN---------------------------- 141 (182)
T ss_dssp EEECSS-CSSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCC----------------------------
T ss_pred EEEEcC-CCccccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCC----------------------------
Confidence 998864 567899999988 9999999999999999996 99999999995
Q ss_pred C-CCCcccHHHHHHHHHHHHHcCccCC
Q 007846 549 M-AVESLNVSVAAGVLLHHLVGHQVSN 574 (587)
Q Consensus 549 g-~VeSLNVSVAAgIlLYEl~rqr~~~ 574 (587)
+ .++|||||||+||+|||+.||+..+
T Consensus 142 g~~~~SLNVsvAaaI~lyE~~rq~~~~ 168 (182)
T 3l8u_A 142 DQHVRSLNLSNTVCMIVYEALRQQDFI 168 (182)
T ss_dssp TTTCSCCCHHHHHHHHHHHHHHHTTTG
T ss_pred CCCCCCEeHHHHHHHHHHHHHHhcccc
Confidence 3 7999999999999999999998755
No 9
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=4.7e-38 Score=301.95 Aligned_cols=151 Identities=26% Similarity=0.332 Sum_probs=139.1
Q ss_pred CCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEE
Q 007846 393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472 (587)
Q Consensus 393 ~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vv 472 (587)
..+++||||+|+||+|+|+|+|||++||+++|+++.++.+. +++.|+|+|+.+++|+..+.|+.++++.++++|++|+
T Consensus 20 ~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~--~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~ 97 (194)
T 1v2x_A 20 QPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGV--PTFNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVY 97 (194)
T ss_dssp BTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGS--CCCCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCc--hhhHHHCCCChheeeeEecCCHHHHHHHHHHCCCEEE
Confidence 45799999999999999999999999999999998765443 7889999999999999999999999999999999999
Q ss_pred EEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCC
Q 007846 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552 (587)
Q Consensus 473 gts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~Ve 552 (587)
|++...+..++.++++++|++||||||+.||++++++.||++|+|||. +.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~~v~IPm~----------------------------g~~~ 149 (194)
T 1v2x_A 98 ATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPML----------------------------GMVQ 149 (194)
T ss_dssp EECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCC----------------------------SSCS
T ss_pred EEecCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCeEEEECCC----------------------------CCCC
Confidence 998766678899999999999999999999999999999999999995 3799
Q ss_pred cccHHHHHHHHHHHHHcCccC
Q 007846 553 SLNVSVAAGVLLHHLVGHQVS 573 (587)
Q Consensus 553 SLNVSVAAgIlLYEl~rqr~~ 573 (587)
|||||||+||+|||+.+|+..
T Consensus 150 SLNvs~AaaI~lye~~rq~~~ 170 (194)
T 1v2x_A 150 SLNVSVAAAVILFEAQRQRLK 170 (194)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998753
No 10
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=297.06 Aligned_cols=154 Identities=23% Similarity=0.349 Sum_probs=139.3
Q ss_pred CCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHH-HhccCceeEEeEEEe--cCHHHHHHHhhhcCc
Q 007846 393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVS-KASSGSLELMELRYC--NNMMQFLVSSAENGW 469 (587)
Q Consensus 393 ~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvv-RASaGAle~lpv~~~--~nl~~~L~~Lke~G~ 469 (587)
..+++|+||+|+||+|+|+|+|||++||+++||+.+ .++++++++ |+|+|+.+++|+..+ .++.++++.++++||
T Consensus 24 ~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~--~~~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~~g~ 101 (184)
T 2ha8_A 24 ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGS--LQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGY 101 (184)
T ss_dssp CCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESC--GGGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECC--CCCCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHHCCC
Confidence 457899999999999999999999999999999875 455788887 889999999999986 799999999999999
Q ss_pred EEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCC
Q 007846 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549 (587)
Q Consensus 470 ~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g 549 (587)
+|+|++...+..++.++++++|++||||||+.||++++++.||++|+|||. +
T Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~~v~IPm~----------------------------g 153 (184)
T 2ha8_A 102 TIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQ----------------------------G 153 (184)
T ss_dssp EEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCC----------------------------S
T ss_pred EEEEEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCcEEEECCC----------------------------C
Confidence 999998766677899999999999999999999999999999999999995 3
Q ss_pred CCCcccHHHHHHHHHHHHHcCccCCCC
Q 007846 550 AVESLNVSVAAGVLLHHLVGHQVSNNS 576 (587)
Q Consensus 550 ~VeSLNVSVAAgIlLYEl~rqr~~~~~ 576 (587)
.++|||||+|++|+|||+.||+....+
T Consensus 154 ~~~SLNvavAaaI~lye~~rq~~~~~~ 180 (184)
T 2ha8_A 154 IIRSLNVHVSGALLIWEYTRQQLLSHG 180 (184)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCcchHHHHHHHHHHHHHHHhhcccC
Confidence 799999999999999999999865543
No 11
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=2.7e-36 Score=293.68 Aligned_cols=151 Identities=25% Similarity=0.343 Sum_probs=138.0
Q ss_pred CcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEE
Q 007846 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 394 ~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvg 473 (587)
.+++||||+|+||+|+|+|+|||++||+++|+++.+..++ ...+.|+|+|+.+++|+..+.|+.++++.++++|++|+|
T Consensus 24 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~-~~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~ 102 (211)
T 1zjr_A 24 KDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVA 102 (211)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCc-hHHHHHHcCCCcccceeEecCCHHHHHHHHHHCCCEEEE
Confidence 4689999999999999999999999999999998765553 335669999999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCc
Q 007846 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553 (587)
Q Consensus 474 ts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeS 553 (587)
++...+..++.+++++.|++||||||+.||++++++.||.+|+|||. +.++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~~v~IPm~----------------------------g~~~S 154 (211)
T 1zjr_A 103 TWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMY----------------------------GMAQS 154 (211)
T ss_dssp EBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCC----------------------------SSCSS
T ss_pred EecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCcEEEeCCC----------------------------CCCCe
Confidence 98766678899999999999999999999999999999999999995 37999
Q ss_pred ccHHHHHHHHHHHHHcCccC
Q 007846 554 LNVSVAAGVLLHHLVGHQVS 573 (587)
Q Consensus 554 LNVSVAAgIlLYEl~rqr~~ 573 (587)
||||||+||+|||+.+|+..
T Consensus 155 LNvsvAaaI~lye~~rq~~~ 174 (211)
T 1zjr_A 155 LNVSVATGIILYEAQRQREE 174 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998743
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=4.2e-35 Score=276.05 Aligned_cols=146 Identities=21% Similarity=0.244 Sum_probs=125.1
Q ss_pred CcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCC-C-CchhHHHhccCceeEEeEE-EecCHHHHHHHhhhcCcE
Q 007846 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA-P-LSGVVSKASSGSLELMELR-YCNNMMQFLVSSAENGWR 470 (587)
Q Consensus 394 ~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~-p-~spkvvRASaGAle~lpv~-~~~nl~~~L~~Lke~G~~ 470 (587)
.+++||||+|+||+|+|+|+|||++||+++|+++.+.+. + ++++++|+|+|+.+++|++ .++++.++++.++ +
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~~~----~ 84 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT----L 84 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS----E
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHhCC----e
Confidence 358999999999999999999999999999998776654 4 4999999999999999964 5579999987775 6
Q ss_pred EEEEecCCC------------CccCC---CCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCccccccc
Q 007846 471 VLGGSVSSK------------AVPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535 (587)
Q Consensus 471 Vvgts~~~~------------a~~L~---ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~ 535 (587)
++|++.... +.++. ++++++|++||||||+.||++++++.||.+|+|||.
T Consensus 85 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~--------------- 149 (173)
T 3kty_A 85 AFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPAN--------------- 149 (173)
T ss_dssp EEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCC---------------
T ss_pred EEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCC---------------
Confidence 888876432 23455 677889999999999999999999999999999995
Q ss_pred CCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCc
Q 007846 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 536 ~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
+.++|||||+|++|+|||+.||-
T Consensus 150 -------------g~~~SLNvs~AaaI~lye~~r~~ 172 (173)
T 3kty_A 150 -------------PQYSSLNVAQALQLAAWELRYAL 172 (173)
T ss_dssp -------------STTCCCCHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCeEeHHHHHHHHHHHHHHHh
Confidence 37999999999999999999873
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=99.97 E-value=2.3e-31 Score=265.08 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=122.9
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEE-EecCHHHHHHHhhhcCcEEEE
Q 007846 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR-YCNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~-~~~nl~~~L~~Lke~G~~Vvg 473 (587)
.+.||||+|+||+|+|+|+|||++||+++|+|+.++ +++++++|+|+||.+++|.. .++++.++++.+ + +|||
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~--~~~~~a~r~A~GA~~~l~~~~~~~~l~eal~~~---~-~vva 80 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDC---S-LVIG 80 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTC---S-EEEE
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC--CCCHHHHHHcCChhheeceeEEeCCHHHHHHhC---C-eEEE
Confidence 589999999999999999999999999999998876 88999999999999999844 468999988655 3 7888
Q ss_pred EecCCCCccCCC----------CCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCcc
Q 007846 474 GSVSSKAVPLNE----------IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAE 543 (587)
Q Consensus 474 ts~~~~a~~L~e----------v~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~ 543 (587)
++.......... +++++|++||||||+.||++++++.||.+|+|||.
T Consensus 81 tt~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~----------------------- 137 (244)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPAN----------------------- 137 (244)
T ss_dssp ECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCC-----------------------
T ss_pred EccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCeEEEecCC-----------------------
Confidence 876443222211 23478999999999999999999999999999995
Q ss_pred ccccCCCCCcccHHHHHHHHHHHHHcCc
Q 007846 544 QFQSFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 544 ~f~~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
+.++|||||+|++|+|||+.+|.
T Consensus 138 -----~~~~SLNva~A~aI~lyE~~rq~ 160 (244)
T 3ilk_A 138 -----PDYSSLNLAMAVQLVSYELRMAF 160 (244)
T ss_dssp -----TTSCCCCHHHHHHHHHHHHHHHH
T ss_pred -----CCCCeeeHHHHHHHHHHHHHHHh
Confidence 37899999999999999999985
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=99.97 E-value=3.6e-31 Score=264.20 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=123.7
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEE-ecCHHHHHHHhhhcCcEEEE
Q 007846 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY-CNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~-~~nl~~~L~~Lke~G~~Vvg 473 (587)
++.||||+|+||+|+|+|+|||++||++.|+|+.++++.++++++|+|+||.++++... ++++.++++.+ ..|+|
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~~~~l~eal~~~----~~v~a 79 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDC----DYVFA 79 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTC----SEEEE
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEEeCCHHHHHHhC----CeEEE
Confidence 57899999999999999999999999999999888767779999999999999887654 58999998655 36888
Q ss_pred EecCCCCccCCCCCC---------------CCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCC
Q 007846 474 GSVSSKAVPLNEIPP---------------GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538 (587)
Q Consensus 474 ts~~~~a~~L~ev~~---------------~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~ 538 (587)
++... .++....+ ++|++||||||+.||++++++.||.+|+|||.
T Consensus 80 tt~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~------------------ 139 (249)
T 3onp_A 80 TTARG--RELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVN------------------ 139 (249)
T ss_dssp EESSC--CCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCC------------------
T ss_pred EcCCC--CCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEEEEcCC------------------
Confidence 87643 34544433 35999999999999999999999999999996
Q ss_pred CCCccccccCCCCCcccHHHHHHHHHHHHHcCcc
Q 007846 539 HGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 539 ~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~ 572 (587)
+.++|||||+|++|+|||+.+|+.
T Consensus 140 ----------~~~~SLNva~A~aI~lYE~~rq~~ 163 (249)
T 3onp_A 140 ----------PEFFSLNLAQCVLLLAYEWRRQHD 163 (249)
T ss_dssp ----------TTCCCCCHHHHHHHHHHHHHHC--
T ss_pred ----------CCCCceeHHHHHHHHHHHHHHhhc
Confidence 378999999999999999999975
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=99.96 E-value=9.7e-31 Score=258.01 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=122.8
Q ss_pred CcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCC-------------------CchhHHHhccCceeEEeEE-E
Q 007846 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP-------------------LSGVVSKASSGSLELMELR-Y 453 (587)
Q Consensus 394 ~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p-------------------~spkvvRASaGAle~lpv~-~ 453 (587)
..++||||+|+||+|+|+|+|||++||+++|+|+.++.++ +++++.|+|+|+.++++.. .
T Consensus 16 ~~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v 95 (223)
T 3ic6_A 16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEI 95 (223)
T ss_dssp GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEE
T ss_pred CCEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEE
Confidence 4689999999999999999999999999999998766654 4579999999999988754 4
Q ss_pred ecCHHHHHHHhhhcCcEEEEEecCCCCccC------------CCC-CCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCC
Q 007846 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPL------------NEI-PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520 (587)
Q Consensus 454 ~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L------------~ev-~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~ 520 (587)
++++.++++.+ ++|||++........ .+. ++..|++||||+|+.||++++++.||++|+|||.
T Consensus 96 ~~~l~eal~~~----~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~IPm~ 171 (223)
T 3ic6_A 96 VATLDEALADT----TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGN 171 (223)
T ss_dssp ESCHHHHHTTE----EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCC
T ss_pred eCCHHHHHHhC----CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCceEEEecCC
Confidence 57998888654 579998865433211 111 2358999999999999999999999999999995
Q ss_pred CCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCcc
Q 007846 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 521 ~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~ 572 (587)
+.++|||||+|++|+|||+.+|+.
T Consensus 172 ----------------------------~~~~SLNva~A~aI~lye~~rq~~ 195 (223)
T 3ic6_A 172 ----------------------------PDYFSLNLAQAVQVVCYEIFSQTD 195 (223)
T ss_dssp ----------------------------TTCCCCCHHHHHHHHHHHHHHTTT
T ss_pred ----------------------------CCCCeeEHHHHHHHHHHHHHHhhc
Confidence 379999999999999999999983
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.44 E-value=1.7e-13 Score=132.75 Aligned_cols=149 Identities=20% Similarity=0.305 Sum_probs=107.6
Q ss_pred cEEEEEeC-CCCcCc------------HHHHHHHHHHhCCCeEEEccCCCCCCchhHHH------hccCc------eeEE
Q 007846 395 SLWVALDE-VTDPQN------------LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSK------ASSGS------LELM 449 (587)
Q Consensus 395 ~l~LvLD~-V~DPgN------------LGAIIRSA~AFGa~gVIL~~~~s~p~spkvvR------ASaGA------le~l 449 (587)
.+.|+|-+ +--.+| ||.|.|+|..||++.++|+.+..++. ..+.+ .+.|+ .+.+
T Consensus 4 ~~~v~LvhyPv~~~~~~~~~t~vtn~dihdiARamkt~Gl~~l~LV~P~~~~~-~~a~~~~~~w~~~~Ga~~np~r~d~L 82 (192)
T 3dcm_X 4 KVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQ-DMVSKMLKFWREGFGSRYNPSRAESL 82 (192)
T ss_dssp SEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHHH-HHHHHHHHHHHTSGGGGTCSSSHHHH
T ss_pred ceEEEEecccccCCCCCEeeeecccccHHHHHHHHHhcCCceEEEECCccccH-HHHHHHHHhhhcccCcccCcCHHHHh
Confidence 35666665 555566 99999999999999999987654321 11222 14565 2222
Q ss_pred e-EEEecCHHHHHHHhhh---cCcEEEEEecCCC--CccCCCC-----CCCCCEEEEEcCCCCCccHHHHHhCCcEE-EE
Q 007846 450 E-LRYCNNMMQFLVSSAE---NGWRVLGGSVSSK--AVPLNEI-----PPGQPTILVLGSEGTGLRPLVERSCTHLV-RI 517 (587)
Q Consensus 450 p-v~~~~nl~~~L~~Lke---~G~~Vvgts~~~~--a~~L~ev-----~~~~p~aLVLGnEg~GLS~~vl~~cD~~V-~I 517 (587)
. +..++++.++++.+.+ .+..|+||+.... .++..++ ...+|++||||. +.||+++.++.||.++ .|
T Consensus 83 ~~a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~~l~~I 161 (192)
T 3dcm_X 83 KLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDYVLEPI 161 (192)
T ss_dssp TTEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSEEBCCT
T ss_pred ccCeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCEEEccC
Confidence 2 3346789999998864 4578999875432 2222222 246899999999 6999999999999999 79
Q ss_pred cCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCccC
Q 007846 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573 (587)
Q Consensus 518 Pm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~~ 573 (587)
|.+ +...||||+.|++|+||+++...+.
T Consensus 162 p~~----------------------------~eY~~Lnl~~AVaIiLdrl~g~~~~ 189 (192)
T 3dcm_X 162 RAQ----------------------------SDFNHLSVRAAAAIIIDRLIGENYA 189 (192)
T ss_dssp TTT----------------------------SSCCCCCHHHHHHHHHHHHTTTCC-
T ss_pred CCC----------------------------CCCCccCHHHHHHHHHHHHcCchhh
Confidence 975 2678999999999999999887653
No 17
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=94.91 E-value=0.03 Score=53.47 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=62.8
Q ss_pred HHHHHHHhCCCeEEEccCCCCCC-c---hhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCc--cCCC
Q 007846 412 IIRSAYFFGASGVVLCAKNSAPL-S---GVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV--PLNE 485 (587)
Q Consensus 412 IIRSA~AFGa~gVIL~~~~s~p~-s---pkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~--~L~e 485 (587)
+.-||-||||++|+++.. |+- - .+++ ..-|.-|.+. ..++...+..+ |..|+-+++-+-.+ -+.+
T Consensus 24 V~LtARAfGA~~iil~~~--D~~v~esv~dV~-~rwGG~F~ve---~~~w~~~i~~w---~G~VVHLTMYG~~i~dvi~~ 94 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTE--DKSVFESVRDVV-ERWGGDFFIK---AVSWKKLLREF---DGLKVHLTMYGIPLPQKLEE 94 (178)
T ss_dssp HHHHHHHTTCSEEEESSC--CHHHHHHHHHHH-HHHCSCCEEE---ECCHHHHHHHC---CSEEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHhCCCeeEEeCC--CHHHHHHHHHHH-HhcCCceEEE---ecCHHHHHHHc---CCEEEEEecCCCchHHHHHH
Confidence 456899999999999864 321 0 1111 2346667776 47899888777 66777766532111 1122
Q ss_pred CCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcC
Q 007846 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519 (587)
Q Consensus 486 v~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm 519 (587)
+.-..++++|+|.| =++.++-+.||+.|.|-.
T Consensus 95 Ir~~~~iLvVVGae--KVP~evYelADyNVaVgn 126 (178)
T 2o3a_A 95 IKRADKVLVVVGAE--KVPPEVYELCDLNISIGT 126 (178)
T ss_dssp HHTCSEEEEEEC------CTTHHHHSSEEEESSS
T ss_pred hhcCCCEEEEECCC--cCCHHHHhhcCcceeeCC
Confidence 22267999999999 589999999999999853
No 18
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.05 Score=52.84 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=65.6
Q ss_pred HHHHHHHhCCCeEEEccCCCCC-Cc---hhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCccCC---
Q 007846 412 IIRSAYFFGASGVVLCAKNSAP-LS---GVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN--- 484 (587)
Q Consensus 412 IIRSA~AFGa~gVIL~~~~s~p-~s---pkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~--- 484 (587)
+.-||-||||++|||+... |+ .- .+++. .=|.-|.+.+ ..++...+..+ |..|+-+++-+ .++.
T Consensus 21 V~LtARAfGA~~iil~~~~-D~~v~esv~dV~~-rWGG~F~ve~--~~~wk~~ik~w---gG~VVHLTMYG--~~i~dvi 91 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEE-DEKVKESVEDVVK-RWGGPFFIEF--NRNWRKVMKEF---TGVKVHLTMYG--LHVDDVI 91 (201)
T ss_dssp HHHHHHHTTCSEEEESSSC-CHHHHHHHHHHHH-HHCSCCBCCB--CSCHHHHHHHC---CSEEEEEEEEE--EEHHHHH
T ss_pred HHHHHHHhcCCeEEEcCCc-ChhHHHHHHHHHH-hcCCceEEEE--CCCHHHHHHhc---CCEEEEEecCC--CchHHHH
Confidence 4568999999999998642 22 11 11111 2466666555 47888888776 66777766532 2222
Q ss_pred -CCC----CCCCEEEEEcCCCCCccHHHHHhCCcEEEEcC
Q 007846 485 -EIP----PGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519 (587)
Q Consensus 485 -ev~----~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm 519 (587)
++. -..++++|+|.| =++.++-+.||+.|.|-.
T Consensus 92 ~eIr~~~~~~~~iLVVVGae--KVP~evYelADyNVaVgn 129 (201)
T 2yy8_A 92 EELKEKLKKGEDFMIIVGAE--KVPREVYELADYNVAIGN 129 (201)
T ss_dssp HHHHHHHHTTCCEEEEECSS--CCCHHHHHHCSEEEESSS
T ss_pred HHHHhhcccCCCEEEEECCC--cCCHHHHhhcCcceeeCC
Confidence 222 257999999999 589999999999999853
No 19
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=87.72 E-value=2.9 Score=35.64 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=52.1
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE--cCHHHHhhhhCCCCCceE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE--TSKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~--Vs~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.|..+++.+. ..-+++..+.. ......|..+|++.+||++. -++.+|...++....-.+
T Consensus 16 kl~~G~~~v~kai~~gk--a~lViiA~D~~----------~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~ 83 (101)
T 1w41_A 16 KIVMGARKSIQYAKMGG--AKLIIVARNAR----------PDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSA 83 (101)
T ss_dssp EEEESHHHHHHHHHHTC--CSEEEEETTSC----------HHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCE
T ss_pred CEeECHHHHHHHHHcCC--CcEEEEeCCCC----------HHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEE
Confidence 36999999999999986 45667765521 12345677889999999765 599999999987655455
Q ss_pred EEEec
Q 007846 370 VLDAS 374 (587)
Q Consensus 370 Va~a~ 374 (587)
+++..
T Consensus 84 vai~d 88 (101)
T 1w41_A 84 LAVVD 88 (101)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 55543
No 20
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=87.68 E-value=3.4 Score=35.95 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=51.2
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc--CHHHHhhhhCCCCCceEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET--SKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V--s~~~Ld~Lsg~~~HQGVV 370 (587)
++.|.+.|..+|+.+. ..-+++..+.. ......|..+|++.+||++.+ +..+|...++....-.++
T Consensus 22 l~~G~~~v~kai~~gk--a~lViiA~D~~----------~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~v 89 (110)
T 3cpq_A 22 VILGSKRTIKFVKHGE--GKLVVLAGNIP----------KDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAAL 89 (110)
T ss_dssp EEESHHHHHHHHHTTC--CSEEEECTTCB----------HHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEE
T ss_pred eeeCHHHHHHHHHcCC--ceEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEE
Confidence 6999999999999986 45677765532 123456778899999997654 899999998875444455
Q ss_pred EEec
Q 007846 371 LDAS 374 (587)
Q Consensus 371 a~a~ 374 (587)
++..
T Consensus 90 aI~d 93 (110)
T 3cpq_A 90 LVLD 93 (110)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5443
No 21
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=86.42 E-value=4.3 Score=33.57 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=50.7
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCCCceEE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~HQGVV 370 (587)
.++.|.+.+..+++.+. ..-+++..+.+ ..-...|..+|++.+||++.+ ++.+|-..++....-.++
T Consensus 11 k~~~G~~~v~kai~~gk--aklViiA~D~~----------~~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ 78 (82)
T 3v7e_A 11 SIIIGTKQTVKALKRGS--VKEVVVAKDAD----------PILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAV 78 (82)
T ss_dssp EEEESHHHHHHHHTTTC--EEEEEEETTSC----------HHHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEE
T ss_pred CeeEcHHHHHHHHHcCC--eeEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEE
Confidence 36999999999999986 56677776643 123456788899999998764 778899988876555544
Q ss_pred E
Q 007846 371 L 371 (587)
Q Consensus 371 a 371 (587)
+
T Consensus 79 a 79 (82)
T 3v7e_A 79 A 79 (82)
T ss_dssp E
T ss_pred E
Confidence 4
No 22
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=86.01 E-value=3.8 Score=35.24 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=52.9
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE--cCHHHHhhhhCCCCCceE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE--TSKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~--Vs~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.|..+|+.+. ..-+++..+.. .....+|..+|+..+||++. -+..+|...++....-.+
T Consensus 22 klv~G~~~v~kai~~gk--aklViiA~D~~----------~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~ 89 (104)
T 4a18_G 22 KATLGYKSTIKAIRNGT--AKLVFISNNCP----------TVRKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCST 89 (104)
T ss_dssp EEEESHHHHHHHHHHTC--CCEEEECTTSC----------HHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSE
T ss_pred CEeECHHHHHHHHHcCC--ceEEEEeCCCC----------HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEE
Confidence 36999999999999986 55677766542 11245667788899999973 789999999987665566
Q ss_pred EEEec
Q 007846 370 VLDAS 374 (587)
Q Consensus 370 Va~a~ 374 (587)
+++..
T Consensus 90 vaI~D 94 (104)
T 4a18_G 90 MAILD 94 (104)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66554
No 23
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.71 E-value=2.8 Score=35.69 Aligned_cols=71 Identities=10% Similarity=0.066 Sum_probs=52.0
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcE-EE-cCHHHHhhhhCCCCCceE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI-KE-TSKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V-~~-Vs~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.|..+|+.+. ..-+++..+.. .....+|..+|++.++|+ .. -+..+|...++....-.+
T Consensus 15 k~v~G~~~v~kai~~gk--a~lViiA~D~~----------~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~ 82 (99)
T 3j21_Z 15 KVVLGSNETIRLAKTGG--AKLIIVAKNAP----------KEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVAS 82 (99)
T ss_dssp CEEESHHHHHHHHHHTC--CSEEEEECCCC----------HHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEE
T ss_pred CEeECHHHHHHHHHcCC--ccEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEE
Confidence 36999999999999986 55677766532 123456778899999996 44 688899888887655566
Q ss_pred EEEec
Q 007846 370 VLDAS 374 (587)
Q Consensus 370 Va~a~ 374 (587)
+++..
T Consensus 83 vaI~d 87 (99)
T 3j21_Z 83 LAIVD 87 (99)
T ss_dssp EEESS
T ss_pred EEEEc
Confidence 66543
No 24
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=85.36 E-value=4.8 Score=34.32 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=49.9
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+|+.+. ..-+++..+.. ......|..+|+..++|++. -+..+|...++.. +..+++
T Consensus 19 ~v~G~~~v~kai~~gk--a~lViiA~D~~----------~~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~-~~~~va 85 (101)
T 3on1_A 19 LLTGEEQVVKAVQNGQ--VTLVILSSDAG----------IHTKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKH-ERVVIG 85 (101)
T ss_dssp EEESHHHHHHHHHTTC--CSEEEEETTSC----------HHHHHHHHHHHHHHTCCEEEESCHHHHHHHTTSS-CCSEEE
T ss_pred EeECHHHHHHHHHcCC--CcEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCc-CeEEEE
Confidence 5999999999999986 55677776542 11345677889999999854 6888999988865 344555
Q ss_pred Ee
Q 007846 372 DA 373 (587)
Q Consensus 372 ~a 373 (587)
+.
T Consensus 86 i~ 87 (101)
T 3on1_A 86 VK 87 (101)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 25
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=83.89 E-value=4.5 Score=34.89 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=53.0
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE--cCHHHHhhhhCCCCCceE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE--TSKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~--Vs~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.|..+|+.+. ..-+++..+.. .....+|..+|+..+||++. -+..+|...+|....-.+
T Consensus 22 k~v~G~~~v~kai~~gk--aklVilA~D~~----------~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~ 89 (105)
T 3u5e_c 22 KYTLGYKSTVKSLRQGK--SKLIIIAANTP----------VLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGV 89 (105)
T ss_dssp EEEESHHHHHHHHHTTC--CSEEEECTTSC----------HHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSE
T ss_pred CeeECHHHHHHHHHcCC--ceEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEE
Confidence 36999999999999986 55677766542 11345677889999999983 689999999987655555
Q ss_pred EEEec
Q 007846 370 VLDAS 374 (587)
Q Consensus 370 Va~a~ 374 (587)
+++..
T Consensus 90 vaI~D 94 (105)
T 3u5e_c 90 VSILE 94 (105)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66554
No 26
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=82.70 E-value=7.8 Score=33.13 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=49.5
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+++.+. ..-+++..+.. .....+|..+|+..++|++. .+..+|...++..+ ..+++
T Consensus 20 ~v~G~~~v~kai~~gk--a~lViiA~D~~----------~~~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~-~~~~a 86 (101)
T 3v7q_A 20 VVSGEDLVIKEIRNAR--AKLVLLTEDAS----------SNTAKKVTDKCNYYKVPYKKVESRAVLGRSIGKEA-RVVVA 86 (101)
T ss_dssp EEESHHHHHHHHHTTC--CSEEEEETTSC----------HHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTSSC-CSEEE
T ss_pred cccchhhhHHHHhcCc--eeEEEEecccc----------ccchhhhcccccccCCCeeeechHHHHHhhhCccc-eEEEE
Confidence 5999999999999986 55677776542 12345677889999999755 68889999888653 23455
Q ss_pred Ee
Q 007846 372 DA 373 (587)
Q Consensus 372 ~a 373 (587)
+.
T Consensus 87 i~ 88 (101)
T 3v7q_A 87 VT 88 (101)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 27
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=79.72 E-value=5.6 Score=35.03 Aligned_cols=71 Identities=14% Similarity=0.041 Sum_probs=52.5
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc--CHHHHhhhhCCCCCceE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET--SKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V--s~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.+..+|+.+. ..-+++..+.. .....+|..+|+..++|++.+ +..+|...+|....-.+
T Consensus 26 k~~~G~~~t~kai~~gk--akLVilA~D~~----------~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~ 93 (112)
T 3iz5_f 26 KYTLGYKTVLKTLRSSL--GKLIILANNCP----------PLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCC 93 (112)
T ss_dssp EEEESHHHHHHHHHTTC--CSEEEECSCCC----------HHHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCE
T ss_pred CeeECHHHHHHHHHcCC--ceEEEEeCCCC----------HHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEE
Confidence 36999999999999986 55677766542 112356778899999999877 78899998887544455
Q ss_pred EEEec
Q 007846 370 VLDAS 374 (587)
Q Consensus 370 Va~a~ 374 (587)
+++..
T Consensus 94 vaI~D 98 (112)
T 3iz5_f 94 LSILD 98 (112)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55544
No 28
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=79.71 E-value=8.4 Score=34.07 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=52.4
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+|+.+. ..-+++..+.+- ..-...|..+|++.+||+..+ ++.+|...++....-.+++
T Consensus 21 l~~G~~~v~kai~~gk--akLViiA~D~~~---------~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~ 89 (121)
T 2lbw_A 21 VKRGVKEVVKALRKGE--KGLVVIAGDIWP---------ADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVF 89 (121)
T ss_dssp EEESHHHHHHHHHHSC--CCEEEECTTCSC---------TTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEE
T ss_pred ccccHHHHHHHHHcCC--ceEEEEeCCCCH---------HHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEE
Confidence 6999999999999986 556777665430 012456778999999998654 7889999888666666666
Q ss_pred Eec
Q 007846 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 90 I~d 92 (121)
T 2lbw_A 90 IVP 92 (121)
T ss_dssp ECC
T ss_pred EEc
Confidence 543
No 29
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=79.11 E-value=13 Score=33.48 Aligned_cols=71 Identities=13% Similarity=-0.062 Sum_probs=50.6
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+|+.+. ..-+++..+.. .......|..+|++.+||++. -++.+|...++....--.++
T Consensus 42 lv~G~~~v~kal~~gk--aklViiA~D~~---------~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~va 110 (135)
T 2aif_A 42 LRKGANEATKALNRGI--AEIVLLAADAE---------PLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAA 110 (135)
T ss_dssp EEESHHHHHHHHHTTC--EEEEEEETTCS---------CHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEE
T ss_pred cccCHHHHHHHHHcCC--CeEEEEecCCC---------hHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEE
Confidence 5999999999999986 55667766542 011236778899999999865 58899999998763332354
Q ss_pred Eec
Q 007846 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 111 I~d 113 (135)
T 2aif_A 111 ITS 113 (135)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 30
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=78.06 E-value=21 Score=35.50 Aligned_cols=117 Identities=13% Similarity=0.177 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEcc-CCCCCCc------hhHHHhc---cCceeEEeEEEecCHHHHHHH
Q 007846 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA-KNSAPLS------GVVSKAS---SGSLELMELRYCNNMMQFLVS 463 (587)
Q Consensus 394 ~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~-~~s~p~s------pkvvRAS---aGAle~lpv~~~~nl~~~L~~ 463 (587)
.++.|++--+....-+=-|++-|--+||+.|+... ..+.... .++++.+ +|-.....+....++.++++.
T Consensus 77 ~~i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~~~k~eRw~~I~~eAaeQs~R~~~P~v~~~~~~~~~l~~ 156 (257)
T 3kw2_A 77 DRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIAD 156 (257)
T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHH
T ss_pred CceEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhhhhhHHHHHHHHHHHHHHcCCCcCCEecCcCCHHHHHhh
Confidence 34566553222234467789999999999997532 2222211 1222222 222222334455678888877
Q ss_pred hhhcCcEEEEEecCC------CCccCCCC-C-CCCCEEEEEcCCCCCccHHHHHhC
Q 007846 464 SAENGWRVLGGSVSS------KAVPLNEI-P-PGQPTILVLGSEGTGLRPLVERSC 511 (587)
Q Consensus 464 Lke~G~~Vvgts~~~------~a~~L~ev-~-~~~p~aLVLGnEg~GLS~~vl~~c 511 (587)
+...+..+++..... ...++.+. . ...+++|++|.|| |++++-++.+
T Consensus 157 ~~~~~~~li~~~~e~~~~~~~~~~~l~~~~~~~~~~v~l~IGPEG-Gfs~~Ei~~~ 211 (257)
T 3kw2_A 157 TPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESA 211 (257)
T ss_dssp SCTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHH
T ss_pred ccccCCEEEEEcccccccccccccchhHhhccCCCcEEEEECCCC-CCCHHHHHHH
Confidence 555555556531111 12233222 1 2578999999998 9998665543
No 31
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=76.80 E-value=17 Score=36.33 Aligned_cols=113 Identities=21% Similarity=0.265 Sum_probs=64.7
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEc--cCCCCCCch-----------hHHHhc---cCceeEEe-EEEecCH
Q 007846 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC--AKNSAPLSG-----------VVSKAS---SGSLELME-LRYCNNM 457 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~--~~~s~p~sp-----------kvvRAS---aGAle~lp-v~~~~nl 457 (587)
.+.|+ -.+-.+..+=-|++-|--+||+.|+.. .++...++. ++++.+ +|-. ++| |....++
T Consensus 82 ~v~L~-~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~-~iP~v~~~~~~ 159 (268)
T 1vhk_A 82 KVYIA-SGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRN-EVPRVMDVHSF 159 (268)
T ss_dssp EEEEE-EECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCS-SCCEECCCBCH
T ss_pred cEEEE-EeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCC-CCcEEecCCCH
Confidence 34444 488888999999999999999999653 333333321 111111 1111 344 3345688
Q ss_pred HHHHHHhhhcCcEEEEEecCCC-CccC------CCCCCCCCEEEEEcCCCCCccHHHHHh
Q 007846 458 MQFLVSSAENGWRVLGGSVSSK-AVPL------NEIPPGQPTILVLGSEGTGLRPLVERS 510 (587)
Q Consensus 458 ~~~L~~Lke~G~~Vvgts~~~~-a~~L------~ev~~~~p~aLVLGnEg~GLS~~vl~~ 510 (587)
.++++.....+..++.-..... ..++ ..+....+++|++|.|| |++++-++.
T Consensus 160 ~~~l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~ 218 (268)
T 1vhk_A 160 QQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVER 218 (268)
T ss_dssp HHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHH
T ss_pred HHHHhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCC-CCCHHHHHH
Confidence 8998866444555555221111 1123 33322347999999999 999865443
No 32
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=76.43 E-value=7.9 Score=34.21 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=52.1
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVV 370 (587)
.++.|.+.|..+|+.+. ..-+++..+.+- ..-...|..+|++.+||+.. -++.+|...++...+-.++
T Consensus 29 kl~~G~~~v~kai~~gk--a~lViiA~D~~p---------~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~v 97 (120)
T 1xbi_A 29 KIKKGANEVTKAVERGI--AKLVIIAEDVKP---------EEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSV 97 (120)
T ss_dssp EEEESHHHHHHHHHHTC--CSEEEEESCCSS---------GGGTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEE
T ss_pred CccccHHHHHHHHHcCC--ceEEEEcCCCCh---------HHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEE
Confidence 46999999999999986 456777665421 01124567889999999765 5889999999876566666
Q ss_pred EEec
Q 007846 371 LDAS 374 (587)
Q Consensus 371 a~a~ 374 (587)
++..
T Consensus 98 aI~d 101 (120)
T 1xbi_A 98 AIIN 101 (120)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6543
No 33
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=76.09 E-value=10 Score=33.56 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=51.7
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+|+.+. ..-+++..+.+- . .-...|..+|++.+||+.. .++.+|...++...+-.+++
T Consensus 29 l~~G~~~v~kal~~gk--a~lViiA~D~~~--~-------~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~va 97 (124)
T 2fc3_A 29 IKKGTNETTKAVERGL--AKLVVIAEDVDP--P-------EIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVA 97 (124)
T ss_dssp EEESHHHHHHHHHTTC--CSEEEEETTCSS--G-------GGTTTHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEE
T ss_pred ccCCHHHHHHHHHcCC--ceEEEEcCCCCh--H-------HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEE
Confidence 6999999999999986 556777765421 0 1124567789999999754 58899999998765666666
Q ss_pred Eec
Q 007846 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 98 I~d 100 (124)
T 2fc3_A 98 IIE 100 (124)
T ss_dssp EEE
T ss_pred EEC
Confidence 554
No 34
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=75.99 E-value=9.3 Score=33.59 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=51.5
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+-|..+|+.+. ..-+++..+..- . .-...|..+|++.+||+.. .++.+|...++...+-.+++
T Consensus 30 l~~G~~~v~kal~~gk--a~lViiA~D~~~--~-------~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~va 98 (120)
T 1vq8_F 30 VKKGTNETTKSIERGS--AELVFVAEDVQP--E-------EIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAA 98 (120)
T ss_dssp EEESHHHHHHHHHHTC--CSEEEEESCCSS--G-------GGTTTHHHHHHTTCCCEEEESCHHHHHHHTTCSSCCSEEE
T ss_pred EeECHHHHHHHHHcCC--ceEEEEeCCCCh--H-------HHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEE
Confidence 6999999999999986 456777665421 0 1124567789999999754 58899999998765666666
Q ss_pred Eec
Q 007846 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 99 I~d 101 (120)
T 1vq8_F 99 VTD 101 (120)
T ss_dssp ESS
T ss_pred Eec
Confidence 543
No 35
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=75.51 E-value=9.6 Score=33.44 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=51.6
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+|+.+. ..-+++..+.+- . .-...|..+|++.+||+.. .++.+|...++...+-.+++
T Consensus 28 l~~G~~~v~kal~~gk--a~lViiA~D~~~--~-------~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~va 96 (119)
T 1rlg_A 28 VKKGTNETTKAVERGL--AKLVYIAEDVDP--P-------EIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAA 96 (119)
T ss_dssp EEESHHHHHHHHTTTC--CSEEEEESCCSC--S-------TTTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEE
T ss_pred eeECHHHHHHHHHcCC--CcEEEEeCCCCh--H-------HHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEE
Confidence 6999999999999986 556777765421 0 0124577789999999755 58899999998765666666
Q ss_pred Eec
Q 007846 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 97 I~d 99 (119)
T 1rlg_A 97 IIN 99 (119)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
No 36
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=74.82 E-value=13 Score=33.12 Aligned_cols=72 Identities=10% Similarity=-0.054 Sum_probs=52.2
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+++.+. ..-+++..+..- . .-...|..+|++.+||+.. -++.+|...+|....-.+++
T Consensus 32 lv~G~~~v~kai~~gk--a~lViiA~D~~p--~-------~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~~~vs~va 100 (122)
T 3o85_A 32 IKRGANEALKQVNRGK--AELVIIAADADP--I-------EIVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVAS 100 (122)
T ss_dssp EEESHHHHHHHHHTTC--CSEEEEETTCSS--G-------GGGTTHHHHHHTTTCCEEEESCHHHHHHHTTCSSCCSEEE
T ss_pred EeEcHHHHHHHHHcCC--ceEEEEeCCCCh--H-------HHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCCEEEEE
Confidence 5999999999999986 556777765420 0 0124567789999999655 67889999998766666666
Q ss_pred Eecc
Q 007846 372 DASP 375 (587)
Q Consensus 372 ~a~p 375 (587)
+..+
T Consensus 101 I~d~ 104 (122)
T 3o85_A 101 IGKH 104 (122)
T ss_dssp ECCC
T ss_pred EEcc
Confidence 5543
No 37
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=72.64 E-value=15 Score=33.22 Aligned_cols=70 Identities=9% Similarity=-0.072 Sum_probs=50.1
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEE-EcCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-ETSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~-~Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+++.+. ..-+++..+.+- ..-...|..+|++.+||+. .-++.+|...++....-.+++
T Consensus 33 l~~G~~~v~kai~~gk--akLViiA~D~~p---------~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~va 101 (134)
T 2ale_A 33 LKKGANEATKTLNRGI--SEFIIMAADCEP---------IEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAAS 101 (134)
T ss_dssp EEESHHHHHHHHHHTC--EEEEEEETTCSS---------GGGGTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEE
T ss_pred cccCchHHHHHHHhCC--CeEEEEeCCCCH---------HHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEE
Confidence 6999999999999986 556777765430 0113457788999999964 458899999998765434555
Q ss_pred Ee
Q 007846 372 DA 373 (587)
Q Consensus 372 ~a 373 (587)
+.
T Consensus 102 I~ 103 (134)
T 2ale_A 102 IT 103 (134)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 38
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=69.06 E-value=14 Score=35.92 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=60.8
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHH----HHHhCCcEEEEcCCCCCCCcCCcc
Q 007846 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL----VERSCTHLVRIPGNIPVDVTAGEI 530 (587)
Q Consensus 455 ~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~----vl~~cD~~V~IPm~~~~~~~~G~~ 530 (587)
.++.+.++++++.| .+|-++.. ..++....+..+.++|+|- ..|++++ +.+.++..++|-
T Consensus 112 ~sle~ll~e~~~~~-~v~~L~E~--G~~i~~~~~~~~~~fvlGd-H~~f~~e~~~~l~~~~~~~iSig------------ 175 (197)
T 2qmm_A 112 KGLEELIEELSEKY-SIIYLKED--GVDISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAALKLSLS------------ 175 (197)
T ss_dssp CCHHHHHHHHHHHS-EEEEEEEE--EEEGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSEEEECC------------
T ss_pred CCHHHHHHHhhcCC-cEEEEcCC--CCCCchhhcCCCCEEEEeC-CCCCCHHHHHHHHHhcCeEEEEC------------
Confidence 57889998887555 47766643 4556666666788999998 7799999 778888888872
Q ss_pred cccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcC
Q 007846 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGH 570 (587)
Q Consensus 531 ~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rq 570 (587)
-.+|=++.++.++-|++-+.
T Consensus 176 --------------------p~~L~A~~vi~~vh~~ld~~ 195 (197)
T 2qmm_A 176 --------------------PLSLLAEQCVVIAHHHLDRL 195 (197)
T ss_dssp --------------------SSCCCHHHHHHHHHHHHHHH
T ss_pred --------------------CchhHHHHHHHHHHHHHhhc
Confidence 14888999999999998543
No 39
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=64.21 E-value=32 Score=33.72 Aligned_cols=83 Identities=7% Similarity=0.169 Sum_probs=61.3
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHH---H-HHhCCcEEEEcCCCCCCCcCCcc
Q 007846 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL---V-ERSCTHLVRIPGNIPVDVTAGEI 530 (587)
Q Consensus 455 ~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~---v-l~~cD~~V~IPm~~~~~~~~G~~ 530 (587)
.++.+.|+++.+.+..+|-++.. ..++.+..+ .+.++|+|- ..|++++ + .+.++..++|-
T Consensus 123 ~sle~ll~e~~~~~~~v~~L~E~--G~~i~~~~~-~~~~fvlGd-H~~f~~e~~~~L~~~~~~~iSig------------ 186 (211)
T 3aia_A 123 LGFRNLVLEKLEEGKNIYYLHMN--GEDVENVDI-ENPVFIIGD-HIGIGEEDERFLDEIKAKRISLS------------ 186 (211)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEE--EEEGGGCCC-CSEEEEEEC-SSCSCHHHHHHHHHTTCEEEECC------------
T ss_pred CCHHHHHHHHhhcCCcEEEEcCC--CCCCccccc-CCcEEEEEC-CCCCCHHHHHHHHhhCCeEEEEC------------
Confidence 47888999887777678876654 345566666 678999998 6699998 5 56677888772
Q ss_pred cccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCccC
Q 007846 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573 (587)
Q Consensus 531 ~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~~ 573 (587)
-.+|=++.++.++-|++-+...|
T Consensus 187 --------------------p~~L~A~hvi~~vh~~LD~~~~~ 209 (211)
T 3aia_A 187 --------------------PLELHANHCITIIHNVLDKKRIC 209 (211)
T ss_dssp --------------------SSCCCHHHHHHHHHHHHHHC---
T ss_pred --------------------CcchHHHHHHHHHHHHhcccccc
Confidence 14888999999999999776554
No 40
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=63.13 E-value=30 Score=34.32 Aligned_cols=111 Identities=12% Similarity=0.176 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEE--ccCCCCCCch-hHH-------HhccCcee-----EEeEE-EecCHH
Q 007846 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVL--CAKNSAPLSG-VVS-------KASSGSLE-----LMELR-YCNNMM 458 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL--~~~~s~p~sp-kvv-------RASaGAle-----~lpv~-~~~nl~ 458 (587)
.++|++ .+-.+..+=-|++-|--+||+.|+. +.++...++. +.. |...-|.+ ++|-+ ...++.
T Consensus 81 ~l~L~~-al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~ 159 (257)
T 1vhy_A 81 KIHLGQ-VISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQ 159 (257)
T ss_dssp CEEEEE-EC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHH
T ss_pred eEEEEE-ecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCHH
Confidence 344444 7778899999999999999999865 4444444432 111 11111111 24433 345677
Q ss_pred HHHHHhhhcCcEEEEEecCCCCccCCCC--CCCCCEEEEEcCCCCCccHHHHHh
Q 007846 459 QFLVSSAENGWRVLGGSVSSKAVPLNEI--PPGQPTILVLGSEGTGLRPLVERS 510 (587)
Q Consensus 459 ~~L~~Lke~G~~Vvgts~~~~a~~L~ev--~~~~p~aLVLGnEg~GLS~~vl~~ 510 (587)
++++.. ..+..++. ... ...++..+ ....+++|++|.|| |++++-++.
T Consensus 160 ~~l~~~-~~~~~l~~-~~~-~~~~l~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~ 209 (257)
T 1vhy_A 160 DWCAEN-DGALKLNL-HPR-AHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQ 209 (257)
T ss_dssp HHHTCC-SSCEEEEE-CTT-CCCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHH
T ss_pred HHHhcC-CCCcEEEE-cCC-CccchhhhhccCCCeEEEEEcCCC-CCCHHHHHH
Confidence 777532 22444444 322 22233333 22357999999999 999865444
No 41
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=62.17 E-value=8.2 Score=40.09 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=52.0
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHH-----HHhhhhCCCCCc
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH-----DLNMVVGNRPHQ 367 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~-----~Ld~Lsg~~~HQ 367 (587)
++||...|..|++.|. +..|++.+++.. . ..+..|++.+++.|.+|..+|.. .|+. ..
T Consensus 266 ~~YG~~eV~~Ale~GA--VetLlV~d~l~r--------r-~~~~~L~e~~~~~G~~V~ivs~~~e~G~qL~~------lG 328 (347)
T 2qi2_A 266 GVYGRDQTESALQMGA--LSDLIITDEMFR--------T-EDGRRSLSIAQTVGTRIHIVSVSNDPGQIVKK------FG 328 (347)
T ss_dssp EEESHHHHHHHHHTTC--EEEEEEEHHHHT--------S-HHHHHHHHHHHHHTCEEEEECTTSHHHHHHHH------TT
T ss_pred EEEcHHHHHHHHHcCC--CeEEEEeccccc--------c-hhHHHHHHHHHHcCCEEEEECCCCcchHHHHh------cC
Confidence 5999999999999996 899999987531 1 23788999999999999999876 5544 35
Q ss_pred eEEEEec
Q 007846 368 GLVLDAS 374 (587)
Q Consensus 368 GVVa~a~ 374 (587)
||.|+..
T Consensus 329 GIAaiLR 335 (347)
T 2qi2_A 329 GFAGILR 335 (347)
T ss_dssp SEEEEEC
T ss_pred CEEEEEe
Confidence 7877654
No 42
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=61.89 E-value=12 Score=39.07 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=51.5
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHH-----HHhhhhCCCCCc
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH-----DLNMVVGNRPHQ 367 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~-----~Ld~Lsg~~~HQ 367 (587)
.+||...|..|++.|. |..|++.+++..+. +. ..+.+..+++.+++.|..|+.++.. .|+.+ .
T Consensus 286 a~yG~~eV~~Ale~GA--VetLLV~d~l~r~~---d~-~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL~~l------G 353 (364)
T 3obw_A 286 VTYGLEQVKNAIEMGA--VETVLVIEDLLSSD---EQ-ERLTIERMLEDIENKRGEVILVPKESPIYFELKNL------T 353 (364)
T ss_dssp EEESHHHHHHHHHHTC--EEEEEEEGGGGSSC---HH-HHHHHHHHHHHHHTTTCEEEEECTTSTTHHHHHHT------T
T ss_pred EEECHHHHHHHHHhCC--CcEEEEeccCcccc---cc-hHHHHHHHHHHHHhcCCEEEEECCCCCCchhhhcC------C
Confidence 5999999999999996 89999999865321 11 1235778889999999999999853 35444 4
Q ss_pred eEEEEe
Q 007846 368 GLVLDA 373 (587)
Q Consensus 368 GVVa~a 373 (587)
||.|+.
T Consensus 354 GIAAiL 359 (364)
T 3obw_A 354 GILAIL 359 (364)
T ss_dssp TEEEEE
T ss_pred cEEEEE
Confidence 676654
No 43
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=61.32 E-value=21 Score=37.47 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=52.4
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHH-----HHhhhhCCCCCc
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH-----DLNMVVGNRPHQ 367 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~-----~Ld~Lsg~~~HQ 367 (587)
..||..-|..|++.|. |..|++.+++..+... .....+..|++.+++.|..|..++.. .|+. ..
T Consensus 298 a~yG~~eV~~Ale~GA--VetLLV~d~l~r~~d~---~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL~~------lg 366 (386)
T 2vgn_A 298 AWYGEKEVVKAAEYGA--ISYLLLTDKVLHSDNI---AQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQ------LT 366 (386)
T ss_dssp EEESHHHHHHHHHTTC--EEEEEEETTGGGSSCH---HHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHHHH------TT
T ss_pred EEeCHHHHHHHHHcCC--cEEEEEechhhcCCCc---hhhhHHHHHHHHHHHcCCEEEEECCCCcchhhHhc------cC
Confidence 5999999999999996 8999999986421110 01123778899999999999999865 4433 46
Q ss_pred eEEEEec
Q 007846 368 GLVLDAS 374 (587)
Q Consensus 368 GVVa~a~ 374 (587)
||.|+..
T Consensus 367 GIAAiLR 373 (386)
T 2vgn_A 367 GIACILK 373 (386)
T ss_dssp TEEEEES
T ss_pred cEEEEEe
Confidence 7888664
No 44
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=61.31 E-value=17 Score=38.28 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=51.3
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHH-----HHhhhhCCCCCc
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH-----DLNMVVGNRPHQ 367 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~-----~Ld~Lsg~~~HQ 367 (587)
.+||...|..|++.|. |..|++.+++..+... .....+..|++.+++.|..|+.++.. .|+.+ .
T Consensus 292 a~YG~~eV~~Ale~GA--VetLLI~d~l~r~~d~---~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL~~l------g 360 (390)
T 3mca_B 292 AWYGPNHVLKAFELGA--IGELLISDSLFRSSDI---ATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLL------S 360 (390)
T ss_dssp EEESHHHHHHHHHTTC--BSSCEEEETTCCCSCH---HHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHHHHT------T
T ss_pred EEECHHHHHHHHHcCC--CeEEEEecccccCCCh---hHHHHHHHHHHHHHhcCCEEEEECCCCCchhhhhcC------C
Confidence 5999999999999996 8899999886422110 01123446888899999999999863 55544 4
Q ss_pred eEEEEec
Q 007846 368 GLVLDAS 374 (587)
Q Consensus 368 GVVa~a~ 374 (587)
||.|+..
T Consensus 361 GiaAiLR 367 (390)
T 3mca_B 361 GIAAILT 367 (390)
T ss_dssp SEEEEBS
T ss_pred cEEEEEe
Confidence 7777654
No 45
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=60.66 E-value=11 Score=33.67 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=50.4
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHh--hhhCCCCCceEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN--MVVGNRPHQGLV 370 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld--~Lsg~~~HQGVV 370 (587)
.+||..-|..|++.|. |..|++.+++..+.. ......+.+|++.+++.|..|+.++..... +|. .-.||.
T Consensus 39 ~~yG~~eV~~Ale~GA--VetLLI~d~l~r~~d---~~~~~~~~el~e~~~~~G~~V~ivs~~~~~G~qL~---~~gGIa 110 (124)
T 1x52_A 39 AFYGLKQVEKANEAMA--IDTLLISDELFRHQD---VATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLS---QLTGVA 110 (124)
T ss_dssp EEESHHHHHHHHHTTC--EEEEEEEHHHHTCSS---HHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHHH---TTTTEE
T ss_pred EEECHHHHHHHHHcCC--ccEEEechhhhcCCC---hHHHHHHHHHHHHHHHcCCEEEEECCCCccHHHHh---cCCCEE
Confidence 5999999999999996 899999987531110 001223444788899999999999864221 231 246788
Q ss_pred EEec
Q 007846 371 LDAS 374 (587)
Q Consensus 371 a~a~ 374 (587)
|+..
T Consensus 111 AiLR 114 (124)
T 1x52_A 111 AILR 114 (124)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7654
No 46
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=58.83 E-value=23 Score=34.88 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=66.1
Q ss_pred EEEEeCCCCcCcHHHHHHHHHHhCCCeEEE--ccCCCCCCchh-----------HHHhc---cCceeEEe-EEEecCHHH
Q 007846 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVL--CAKNSAPLSGV-----------VSKAS---SGSLELME-LRYCNNMMQ 459 (587)
Q Consensus 397 ~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL--~~~~s~p~spk-----------vvRAS---aGAle~lp-v~~~~nl~~ 459 (587)
+.++-.+-.+..+=-|++-|.=+||+.|+. +.++...++.+ +++.+ +|-. ++| +....++.+
T Consensus 80 v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~-~iP~v~~~~~~~~ 158 (251)
T 4e8b_A 80 IHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRN-RVPEIRPAMDLEA 158 (251)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCBCCCEEHHH
T ss_pred EEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCC-cCcEECCcCCHHH
Confidence 444457888899999999999999999964 45554455421 11211 1111 233 333446777
Q ss_pred HHHHhhhcCcEEEEEecCCCCccCCCCCC-CCCEEEEEcCCCCCccHHHHHhC
Q 007846 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPP-GQPTILVLGSEGTGLRPLVERSC 511 (587)
Q Consensus 460 ~L~~Lke~G~~Vvgts~~~~a~~L~ev~~-~~p~aLVLGnEg~GLS~~vl~~c 511 (587)
++.... .+..++. ... ...++..++. .++++|++|.|| |++++-++.+
T Consensus 159 ~l~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~ 207 (251)
T 4e8b_A 159 WCAEQD-EGLKLNL-HPR-ASNSINTLPLPVERVRLLIGPEG-GLSADEIAMT 207 (251)
T ss_dssp HHHCCC-SSEEEEE-CTT-CSCBGGGSCSCCCEEEEEECCTT-CCCHHHHHHH
T ss_pred HHhhcC-cCceEee-chh-hhCchhhccccCCcEEEEECCCC-CCCHHHHHHH
Confidence 775432 3444444 322 2334444443 467899999998 9998655543
No 47
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=56.96 E-value=52 Score=29.32 Aligned_cols=72 Identities=8% Similarity=-0.010 Sum_probs=49.6
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCc--EEEcCHHHHhhhhCCCCCceE
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS--IKETSKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~--V~~Vs~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.|..+|+.+. ..-+++..+.. .....+|..++...+++ ++.-+..+|...++....-.+
T Consensus 27 klv~G~~~v~kaIr~gk--akLVIiA~Das----------~~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~v~~ 94 (125)
T 3vi6_A 27 KYVLGYKQTLKMIRQGK--AKLVILANNCP----------ALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCT 94 (125)
T ss_dssp EEEESHHHHHHHHHTTC--CSEEEECTTSC----------HHHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSCCCE
T ss_pred CeeeCHHHHHHHHHcCC--ceEEEEeCCCC----------HHHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcccEEE
Confidence 36999999999999986 56677776542 11223455455555554 456789999999998666666
Q ss_pred EEEecc
Q 007846 370 VLDASP 375 (587)
Q Consensus 370 Va~a~p 375 (587)
+++..+
T Consensus 95 vaI~D~ 100 (125)
T 3vi6_A 95 LAIIDP 100 (125)
T ss_dssp EEEEEC
T ss_pred EEEeCc
Confidence 776553
No 48
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=53.47 E-value=25 Score=32.88 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=51.0
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCcccc---------c-------cccc------------------c-chhHHHH
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSS---------N-------NRKK------------------K-DKKGYEK 337 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~---------~-------~rk~------------------~-d~~~~~~ 337 (587)
++||...|..||+.|. |..|++.+++..++ + .... . ..+-++.
T Consensus 47 ~~yG~~ev~~Ale~GA--VetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~ 124 (166)
T 3ir9_A 47 VAYGESQVRANLEINS--VDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDE 124 (166)
T ss_dssp EEESHHHHHHHHTTTC--EEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHHH
T ss_pred EEEcHHHHHHHHHhCC--ceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHHHHH
Confidence 5999999999999996 88999999875431 0 0000 0 0123678
Q ss_pred HHHHHHhcCCcEEEcCHHHH--hhhhCCCCCceEEEEe
Q 007846 338 VLKMAENMGISIKETSKHDL--NMVVGNRPHQGLVLDA 373 (587)
Q Consensus 338 Il~la~e~gi~V~~Vs~~~L--d~Lsg~~~HQGVVa~a 373 (587)
|++.+++.|..+.+++..-- .+|. +...||.|+.
T Consensus 125 L~e~~~~~G~~v~ivs~~~eeG~ql~--~~fGGIaaiL 160 (166)
T 3ir9_A 125 FSELADKSNAKVVFVSTDFDEGSQLM--NAFGGIAAIL 160 (166)
T ss_dssp HHHHHHHTTCEEEEECSCSHHHHHHH--HTSTTEEEEE
T ss_pred HHHHHHhcCCEEEEECCCChhHHHHH--HcCCCEEEEE
Confidence 89999999999999876421 1121 1235777654
No 49
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=51.59 E-value=20 Score=37.33 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=52.1
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCH-----HHHhhhhCCCCCc
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSK-----HDLNMVVGNRPHQ 367 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~-----~~Ld~Lsg~~~HQ 367 (587)
.+||...|..||+.|. |..|++++++..+ .|+ ...+..|++.+++.|..|+.+|. +.|+.+ .
T Consensus 266 a~YG~~eV~~Ale~GA--VetLLIsd~l~r~--~r~---~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL~~l------G 332 (352)
T 3oby_A 266 VAYGLDEVREAHNYRA--IEVLLVADEFLLE--ERE---KWDVDGLLREVEESGGKVVIMSTEFEPGKRLMSL------G 332 (352)
T ss_dssp EEESHHHHHHHHTTTC--EEEEEEEHHHHHH--HTT---TSCHHHHHHHHHHTTCEEEEECTTSHHHHHHHHT------T
T ss_pred EEECHHHHHHHHHcCC--ceEEEEeccchhc--ccc---hHHHHHHHHHHHHcCCEEEEEcCCCcchhHHhcC------C
Confidence 5999999999999996 8999999875421 111 12478899999999999999986 356555 4
Q ss_pred eEEEEec
Q 007846 368 GLVLDAS 374 (587)
Q Consensus 368 GVVa~a~ 374 (587)
||.|+..
T Consensus 333 GIaAiLR 339 (352)
T 3oby_A 333 GIAALLR 339 (352)
T ss_dssp SEEEEES
T ss_pred CEEEEEe
Confidence 6777653
No 50
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=51.04 E-value=13 Score=38.58 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=51.0
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHH-----HHhhhhCCCCCc
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH-----DLNMVVGNRPHQ 367 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~-----~Ld~Lsg~~~HQ 367 (587)
.+||...|..||+.|. |..|++.+++.. +. ..+.+..+++.+++.|..|+.++.. .|+.+ .
T Consensus 281 a~yG~~eV~~Ale~GA--VetLLV~d~l~r--~~----~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL~~l------g 346 (357)
T 3j15_A 281 VAYGLKEVEEAVNYGA--VETLLVLDELLK--GE----LREKVEELMDAVRYSRGEVVVVSSEHEGGEKLKAL------G 346 (357)
T ss_dssp EEESTHHHHHHHHHTC--EEEEEEEHHHHT--SS----CCHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHH------C
T ss_pred EEeCHHHHHHHHHhCC--CcEEEEeccccc--cc----chHHHHHHHHHHHHcCCEEEEECCCCCcchhhhcC------C
Confidence 5999999999999996 899999987532 00 1235788999999999999999843 56554 4
Q ss_pred eEEEEe
Q 007846 368 GLVLDA 373 (587)
Q Consensus 368 GVVa~a 373 (587)
||.|+.
T Consensus 347 GiaAiL 352 (357)
T 3j15_A 347 GLAALL 352 (357)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 676654
No 51
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=49.84 E-value=24 Score=36.47 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=42.0
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHH
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~ 355 (587)
.+||...|..|++.|. |..|+|.++ | ..+..|++.+...|..|+.++..
T Consensus 300 a~yG~~eV~~Al~~Ga--VetLlv~d~-------r-----d~~~~L~e~a~~~G~~V~ivs~~ 348 (373)
T 3agk_A 300 IVYGEKDVEAALEMGA--VKTLLIHES-------R-----EDLEEWVEKAKSSGAQVIVVPES 348 (373)
T ss_dssp EEESHHHHHHHHHTTC--EEEEEEETT-------C-----TTHHHHHHHHTTTTCEEEEECTT
T ss_pred EeeCHHHHHHHHHhCC--ccEEEEeCC-------h-----hHHHHHHHHHHHcCCEEEEECCC
Confidence 5999999999999996 899999875 1 24678899999999999999876
No 52
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=47.16 E-value=67 Score=31.51 Aligned_cols=112 Identities=12% Similarity=0.023 Sum_probs=67.8
Q ss_pred CcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEE--EecCHHHHHHHhhhcCcEEEEEecCCCCcc
Q 007846 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR--YCNNMMQFLVSSAENGWRVLGGSVSSKAVP 482 (587)
Q Consensus 405 DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~--~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~ 482 (587)
|=.|++++||-|.--+... .. ..-.+..|=+ .-.++.+.|..+++.| ++|-++. ...+
T Consensus 86 DErs~a~lI~kAL~~~~~~------~~-----------~~~~~~~pGi~v~~~~fe~ll~e~~~~~-~ly~L~e--~G~d 145 (208)
T 2qwv_A 86 HEAALIALLVKALDASVGM------GK-----------EQTRVVQPGLTVRTISFEALLGELAEHH-SLYMMDK--KGDS 145 (208)
T ss_dssp SHHHHHHHHHHHHHHTTTC------CT-----------TCEEEEETTEEEECCCHHHHHHHHHTTS-EEEEEEE--EEEE
T ss_pred chHHHHHHHHHHHHhcccc------cc-----------ccccccCCCEEEecCCHHHHHHHHHhcC-cEEEEeC--CCcC
Confidence 5667888888887665410 00 0112222322 2257889999988775 4776654 4578
Q ss_pred CCCCCCCCCEEEEEcCCCCCccHHHHHhC----CcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHH
Q 007846 483 LNEIPPGQPTILVLGSEGTGLRPLVERSC----THLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSV 558 (587)
Q Consensus 483 L~ev~~~~p~aLVLGnEg~GLS~~vl~~c----D~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSV 558 (587)
+.++.++.+.++||| ...|++++-.+.- +..|+|- -.+|=++.
T Consensus 146 i~~~~~~~~~~FvLg-DH~g~~~eee~~L~~~~~~~iSlG--------------------------------P~~l~A~h 192 (208)
T 2qwv_A 146 IRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISLG--------------------------------PKMLFASQ 192 (208)
T ss_dssp TTTSCCCSSEEEEEC-C----------CTTTTTCEEEECC--------------------------------SSCCCHHH
T ss_pred HhhccCCCCCEEEEc-CCCCCCHHHHHHHHhcCCeEEEeC--------------------------------chHHHHHH
Confidence 888888889999999 7889998765443 3455551 24788999
Q ss_pred HHHHHHHHHHc
Q 007846 559 AAGVLLHHLVG 569 (587)
Q Consensus 559 AAgIlLYEl~r 569 (587)
+..|+-|+|=+
T Consensus 193 cI~~vhn~LD~ 203 (208)
T 2qwv_A 193 CVTLIHNEIDH 203 (208)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999854
No 53
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=46.00 E-value=55 Score=29.24 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=44.9
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCC
Q 007846 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGN 363 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~ 363 (587)
.++.|.+.+..+|+.+. ..-+++..+.+- ..-...|..+|++.+||++.+ +..+|.+.++.
T Consensus 24 kl~~G~~~v~Kai~~gk--a~LViiA~D~~p---------~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~ 85 (126)
T 2xzm_U 24 AISKGLHEVLRTIEAKQ--ALFVCVAEDCDQ---------GNYVKLVKALCAKNEIKYVSVPKRASLGEYLGH 85 (126)
T ss_dssp CEEESHHHHHHHHHHTC--CSEEEEESSCCS---------TTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTC
T ss_pred CEeecHHHHHHHHHcCC--ceEEEEeCCCCh---------HHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCC
Confidence 36999999999999886 556777665420 012345778899999998765 66889888874
No 54
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=44.28 E-value=15 Score=33.83 Aligned_cols=71 Identities=10% Similarity=-0.072 Sum_probs=49.7
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcE-EEcCHHHHhhhhCCCCCceEEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI-KETSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V-~~Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+|+.+. ..-+++..+.+- ..-...|..+|++.+||+ +.-++.+|...++....-.+++
T Consensus 51 l~~G~kev~KaI~~gk--akLVIIA~D~~p---------~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~~~vs~va 119 (144)
T 2jnb_A 51 LRKGANEATKTLNRGI--SEFIVMAADAEP---------LEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACS 119 (144)
T ss_dssp CCBCHHHHHHHHHHTC--EEEEEEETTCSC---------HHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCSSCCSEEE
T ss_pred ccccHHHHHHHHHhCC--CeEEEEeCCCCH---------HHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCceEEEE
Confidence 4899999999999986 556777665420 001233556789999995 4558889999999765545566
Q ss_pred Eec
Q 007846 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 120 I~~ 122 (144)
T 2jnb_A 120 VTI 122 (144)
T ss_dssp EEC
T ss_pred EEe
Confidence 553
No 55
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.12 E-value=99 Score=31.37 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=46.2
Q ss_pred ccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCC
Q 007846 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNR 364 (587)
Q Consensus 290 ~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~ 364 (587)
.+.++.|.+.|..+|+.+. ..-+++..+.+- . .-...|..+|++.+|++++ -+..+|...++..
T Consensus 133 ~~~L~~G~keV~KaIekgk--AkLVIIA~DasP--~-------ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk 197 (266)
T 2zkr_f 133 PPVLRAGVNTVTTLVENKK--AQLVVIAHDVDP--I-------ELVVFLPALCRKMGVPYCIIKGKARLGHLVHRK 197 (266)
T ss_dssp CCCCCBSHHHHHHHHHTTC--CSEEEEESCCSS--S-------TTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSS
T ss_pred CCeeeeChHHHHHHHHhCC--ceEEEEecCCCH--H-------HHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC
Confidence 3557999999999999986 556777766421 0 1122356889999999654 5788898888764
No 56
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=40.22 E-value=27 Score=36.24 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=51.8
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHh--hhhCCCCCceEE
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN--MVVGNRPHQGLV 370 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld--~Lsg~~~HQGVV 370 (587)
.+||...|..|++.|. |..|++.+++..+. +......+..|++.+++.|..|+.++..... +| ..-.||.
T Consensus 273 a~yG~~eV~~Al~~GA--VetLLV~d~l~r~~---d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL---~~~gGIa 344 (358)
T 3agj_B 273 VAYTPGEVLAVARMGA--VDTVLLVDTLLHSP---DDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL---VSFGGVI 344 (358)
T ss_dssp EEESHHHHHHHHHHTC--EEEEEEEHHHHTCS---SHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH---GGGTTEE
T ss_pred EEECHHHHHHHHHhCC--ceEEEEecccccCC---ChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh---hcCCcEE
Confidence 5999999999999996 89999998754211 0001234678889999999999999864221 22 2245787
Q ss_pred EEec
Q 007846 371 LDAS 374 (587)
Q Consensus 371 a~a~ 374 (587)
|+..
T Consensus 345 AiLR 348 (358)
T 3agj_B 345 ALLR 348 (358)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7654
No 57
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=36.53 E-value=29 Score=33.75 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=58.4
Q ss_pred EEEEEeCC-CCcCcHHHHHHHHHHhCCCeEEEc--cCCCCCCchhH-------HHhccCcee-----EEeEE-EecCHHH
Q 007846 396 LWVALDEV-TDPQNLGAIIRSAYFFGASGVVLC--AKNSAPLSGVV-------SKASSGSLE-----LMELR-YCNNMMQ 459 (587)
Q Consensus 396 l~LvLD~V-~DPgNLGAIIRSA~AFGa~gVIL~--~~~s~p~spkv-------vRASaGAle-----~lpv~-~~~nl~~ 459 (587)
+.|++ .+ -.+..+=-|++-|--+||+.|+.. .++...| .+. -|...-|.+ ++|-+ ...++.+
T Consensus 73 i~L~~-al~~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~-~~~~~k~~Rw~~i~~eAaeQs~r~~iP~v~~~~~~~~ 150 (229)
T 2egv_A 73 ITLYQ-SVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE-EAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSD 150 (229)
T ss_dssp EEEEE-ECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCH-HHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGG
T ss_pred EEEEE-ecccCHHHHHHHHHHHHHhCcCEEEEEEeEEeeecc-cchhhHHHHHHHHHHHHHHHcCCCcCcEEcccCCHHH
Confidence 55555 76 888999999999999999998653 3433333 111 011111111 23332 2234444
Q ss_pred HHHHhhhcCcEEEEEecCCCCccCCCCCCCC-CEEEEEcCCCCCccHHHHHh
Q 007846 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVERS 510 (587)
Q Consensus 460 ~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~-p~aLVLGnEg~GLS~~vl~~ 510 (587)
+++.. .+..+++ +.. ...++.++.... +++|++|.|| |++++-.+.
T Consensus 151 ~l~~~--~~~~li~-~~~-~~~~l~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~ 197 (229)
T 2egv_A 151 LIPES--EENIILD-NFY-EGVKPKDVNLEAKTYSVVVGPEG-GFSKRESQI 197 (229)
T ss_dssp CCCCS--SEEEEEC-TTS-CCBCGGGSCTTCSEEEEEECCTT-CCCHHHHHH
T ss_pred HHhhC--CCCEEEE-cCC-ccchhhhhccCCCcEEEEEcCCC-CCCHHHHHH
Confidence 44321 1233333 222 223333332234 7899999999 999865443
No 58
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=35.49 E-value=40 Score=29.86 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=45.0
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCC
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRP 365 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~ 365 (587)
+..|.+.|..+++.+. ..-+++..+.+- ..-...|..+|++.+||+.++ ++.+|...++...
T Consensus 26 l~~G~~~v~kaI~~gk--a~LVvIA~D~~p---------~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~ 88 (113)
T 3jyw_G 26 VKYGLNHVVALIENKK--AKLVLIANDVDP---------IELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT 88 (113)
T ss_dssp EEESHHHHHHTTTTTC--CSEEEECSCCSS---------HHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSS
T ss_pred hhchHHHHHHHHHcCC--ceEEEEeCCCCH---------HHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCC
Confidence 6899999999999986 556777765420 111234678899999998775 6677888887653
No 59
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=31.01 E-value=47 Score=35.12 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=50.6
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccc----c-----------------ccc-c------------chhHHHHH
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSN----N-----------------RKK-K------------DKKGYEKV 338 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~----~-----------------rk~-~------------d~~~~~~I 338 (587)
.+||...|..||+.|. |..|++.+++...++ . |+. . ...-++.|
T Consensus 301 a~yG~~eV~~Al~~Ga--VetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L 378 (437)
T 1dt9_A 301 YCFGVEDTLKALEMGA--VEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWF 378 (437)
T ss_dssp EEESHHHHHHHHHSSC--CSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHHHHH
T ss_pred EEecHHHHHHHHHhCC--ccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHH
Confidence 6999999999999996 889999998652211 0 000 0 00114457
Q ss_pred HHHHHhcCCcEEEcCHH-----H-HhhhhCCCCCceEEEEec
Q 007846 339 LKMAENMGISIKETSKH-----D-LNMVVGNRPHQGLVLDAS 374 (587)
Q Consensus 339 l~la~e~gi~V~~Vs~~-----~-Ld~Lsg~~~HQGVVa~a~ 374 (587)
++.+++.|..|.+++.. . |+. ..||.|+..
T Consensus 379 ~e~~~~~G~~V~ivs~~~e~G~q~l~~------~gGIaAiLR 414 (437)
T 1dt9_A 379 ANNYKKFGATLEIVTDKSQEGSQFVKG------FGGIGGILR 414 (437)
T ss_dssp HHTCTTTTSCEEEECSSSHHHHHHHHT------TTTEEEECS
T ss_pred HHHHHHcCCEEEEECCCChhHHHHHHh------CCCEEEEEe
Confidence 77788899999999875 3 433 467888765
No 60
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=30.80 E-value=28 Score=34.24 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=60.3
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCc---hhHHHhccCcee-----EEeEEEecCHHHHHHHhhh
Q 007846 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLS---GVVSKASSGSLE-----LMELRYCNNMMQFLVSSAE 466 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~s---pkvvRASaGAle-----~lpv~~~~nl~~~L~~Lke 466 (587)
++.|++ .+-.+..+=-|++-|.-+||+.|+.....+..-. .+.-|...-|.+ ++|-+...++.++++..
T Consensus 86 ~i~L~~-al~K~~r~e~ilqkatELGV~~I~p~~s~s~~~~~k~eRw~~i~~eAaeQs~R~~~P~v~~~~~~~~l~~~-- 162 (234)
T 1z85_A 86 KLSVVV-PIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNV-- 162 (234)
T ss_dssp CEEEEE-ECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEEEECCSCCCCSEE--
T ss_pred eEEEEE-eccchHHHHHHHHHHHHhCCCEEEEEEEEEEechhhHHHHHHHHHHHHHHcCCCccceEEeccHHHHHhhC--
Confidence 455554 8888999999999999999999976532221100 111111111111 23332244555554321
Q ss_pred cCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcC
Q 007846 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519 (587)
Q Consensus 467 ~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm 519 (587)
.+. ++ .... .. +..+. +.+++|++|.|| |++++-++..... ..|.
T Consensus 163 ~~~-lv--~e~~-~~-l~~~~-~~~i~l~IGPEG-Gfs~~Ei~~~~~~-f~~v 207 (234)
T 1z85_A 163 ITL-DL--DASQ-NL-LDANL-EGSITVVVGPEG-GFSEKERELLRSS-TTIV 207 (234)
T ss_dssp EEE-CC-----C-CC-SSSCC-CSSEEEEECCTT-CCCHHHHHHHHHH-SEEC
T ss_pred CCe-EE--ECCc-ch-hhhcc-CCCEEEEEcCCC-CCCHHHHHHHHhh-CeEc
Confidence 122 22 1111 11 33332 357999999999 9998655544333 4454
No 61
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=30.05 E-value=76 Score=30.76 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=60.3
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEc--cCCCCCCc--hh---HHHhccCcee-----EEeEE-EecCHHHHH
Q 007846 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC--AKNSAPLS--GV---VSKASSGSLE-----LMELR-YCNNMMQFL 461 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~--~~~s~p~s--pk---vvRASaGAle-----~lpv~-~~~nl~~~L 461 (587)
++.|++ .+-.+..+=-|++-|--+|++.|+.. .++...+. .+ .-|...-|.+ ++|-+ ...++.+++
T Consensus 72 ~v~L~~-al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~~~~~~~~l 150 (228)
T 1v6z_A 72 EVVLYV-ALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVP 150 (228)
T ss_dssp CEEEEE-ECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCC
T ss_pred cEEEEE-EecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeeccccchHHHHHHHHHHHHHHcCCCcCcEEecCCCHHHHh
Confidence 455554 88888999999999999999999653 44333321 11 1111111111 23332 223444554
Q ss_pred HHhhhcCcEEEEEecCCCCccCCCCCC-CCCEEEEEcCCCCCccHHHHHhC
Q 007846 462 VSSAENGWRVLGGSVSSKAVPLNEIPP-GQPTILVLGSEGTGLRPLVERSC 511 (587)
Q Consensus 462 ~~Lke~G~~Vvgts~~~~a~~L~ev~~-~~p~aLVLGnEg~GLS~~vl~~c 511 (587)
+ . +..++. .... ..++.++.. ..+++|++|.|| |++++-++.+
T Consensus 151 ~---~-~~~l~~-~~~~-~~~l~~~~~~~~~~~l~IGPEG-Gfs~~Ei~~~ 194 (228)
T 1v6z_A 151 Q---V-AQGLVA-HVGA-TARVREVLDPEKPLALAVGPEG-GFAEEEVALL 194 (228)
T ss_dssp C---C-SSEEEE-CTTC-CCCHHHHCCTTSCEEEEECCTT-CCCHHHHHHH
T ss_pred h---C-CCEEEE-eCCC-ccchhhhccCCCcEEEEEcCCC-CCCHHHHHHH
Confidence 3 2 455555 3221 122222211 358999999999 9998655443
No 62
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=27.36 E-value=1.7e+02 Score=29.59 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=44.8
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEE-EcCHHHHhhhhCCC
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-ETSKHDLNMVVGNR 364 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~-~Vs~~~Ld~Lsg~~ 364 (587)
+..|.+.|..+|+.+. ..-+++..+.+- ..-..-|..+|++.+|+++ .-+..+|...++..
T Consensus 132 lk~G~keV~KaIekgK--AkLVVIA~DadP---------~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk 193 (256)
T 3izc_H 132 VKYGLNHVVALIENKK--AKLVLIANDVDP---------IELVVFLPALCKKMGVPYAIVKGKARLGTLVNQK 193 (256)
T ss_dssp EEESHHHHHHHHHHTC--CSEEEEESCCSS---------GGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCS
T ss_pred hhccHHHHHHHHHhCc--ceEEEEeCCCCh---------HHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC
Confidence 5899999999999986 556777766431 0112235788999999974 45888999888764
No 63
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=23.77 E-value=3.7e+02 Score=27.08 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=44.5
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCC
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRP 365 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~ 365 (587)
+..|++.|.-+++.+.- .-+++..+.+- ..-+..|..+|++.+|++..+ ++.+|..+++..+
T Consensus 125 lk~GvneVtKaIekgKA--qLVVIA~DvdP---------ielv~~LPaLCee~~VPY~~V~sK~~LG~avGrKt 187 (255)
T 4a17_F 125 LKYGLNHITTLIENKQA--KLVVIAHDVDP---------IELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKT 187 (255)
T ss_dssp EEECHHHHHHHHHTSCC--SEEEEESCCSS---------THHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSSC
T ss_pred eecchHHHHHHHHcCCc--eEEEEeCCCCh---------HHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCc
Confidence 58999999999999863 44556555421 112334568899999998665 7788998888654
No 64
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=21.82 E-value=56 Score=22.24 Aligned_cols=13 Identities=54% Similarity=0.629 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 007846 556 VSVAAGVLLHHLV 568 (587)
Q Consensus 556 VSVAAgIlLYEl~ 568 (587)
++||+++++|-++
T Consensus 13 iav~aaVllylW~ 25 (26)
T 3j1r_A 13 IAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6899999999875
No 65
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=21.71 E-value=3.5e+02 Score=27.35 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=44.2
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCC
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRP 365 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~ 365 (587)
+-+|+|.|.-+++.+.- .-+++..+.+- ..-+.-|..+|++.||++.+| ++..|..+++..+
T Consensus 128 lk~GvneVTklVE~kKA--qLVVIA~DVdP---------iElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrKt 190 (258)
T 3iz5_H 128 VKYGLNHVTYLIEQSKA--QLVVIAHDVDP---------IELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKT 190 (258)
T ss_dssp EEESHHHHHHHHHTTCE--EEEEEESCCSS---------THHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCSS
T ss_pred eecccHHHHHHHHcCcc--eEEEEeCCCCh---------HHHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCcc
Confidence 57999999999999863 34555555431 112334568899999998665 7778988888655
No 66
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=21.43 E-value=1.5e+02 Score=27.97 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=43.2
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccc---hhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCC
Q 007846 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKD---KKGYEKVLKMAENMGISIKET-SKHDLNMVVGNR 364 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d---~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~ 364 (587)
++-|.+-+.-||+..+....-+++.++.+- ..+ +-.+.-|..+|.+.+|++..| +..+|.+.++..
T Consensus 36 l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~------~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi~ 105 (165)
T 2kg4_A 36 ITVGVYEAAKLLNVDPDNVVLCLLAADEDD------DRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLE 105 (165)
T ss_dssp EEECGGGHHHHHHHCTTTEEEEEEECCTGG------GGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHT
T ss_pred eeecHHHHHHHHhcCCCcEEEEEEeCCCCc------cchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCCc
Confidence 588999999999444445667777665320 001 000223568899999998776 667888887743
Done!