Your job contains 1 sequence.
>007847
MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRS
LGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDE
RSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAK
RLEKVTTTNIGRSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVS
DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV
LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV
VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFG
ASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKA
VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHG
SAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTATVD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007847
(587 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2051910 - symbol:AT2G19870 species:3702 "Arabi... 1217 6.2e-129 2
ZFIN|ZDB-GENE-060526-229 - symbol:mrm1 "mitochondrial rRN... 351 3.7e-37 2
UNIPROTKB|F1NX84 - symbol:MRM1 "Uncharacterized protein" ... 334 3.8e-35 2
DICTYBASE|DDB_G0277479 - symbol:DDB_G0277479 "rRNA methyl... 284 9.3e-34 4
UNIPROTKB|E2RN23 - symbol:MRM1 "Uncharacterized protein" ... 347 3.0e-31 1
UNIPROTKB|A7MBD2 - symbol:MRM1 "MRM1 protein" species:991... 342 1.1e-30 1
UNIPROTKB|F1S1B8 - symbol:MRM1 "Uncharacterized protein" ... 342 1.1e-30 1
RGD|1566232 - symbol:Mrm1 "mitochondrial rRNA methyltrans... 341 1.4e-30 1
MGI|MGI:2443470 - symbol:Mrm1 "mitochondrial rRNA methylt... 338 3.1e-30 1
UNIPROTKB|Q6IN84 - symbol:MRM1 "rRNA methyltransferase 1,... 336 5.3e-30 1
UNIPROTKB|P96861 - symbol:MT3685 "Uncharacterized tRNA/rR... 266 1.0e-27 3
POMBASE|SPBC1347.13c - symbol:SPBC1347.13c "ribose methyl... 263 1.3e-26 2
TIGR_CMR|GSU_1462 - symbol:GSU_1462 "RNA methyltransferas... 271 4.0e-26 2
UNIPROTKB|Q9KNY2 - symbol:rlmB "23S rRNA (guanosine-2'-O-... 254 1.1e-24 2
TIGR_CMR|VC_2598 - symbol:VC_2598 "RNA methyltransferase,... 254 1.1e-24 2
TIGR_CMR|CBU_0986 - symbol:CBU_0986 "RNA methyltransferas... 244 2.3e-23 2
TIGR_CMR|ECH_0404 - symbol:ECH_0404 "RNA methyltransferas... 243 6.8e-22 2
TIGR_CMR|APH_0275 - symbol:APH_0275 "RNA methyltransferas... 241 2.3e-21 2
TIGR_CMR|BA_0091 - symbol:BA_0091 "RNA methyltransferase,... 235 4.0e-21 2
UNIPROTKB|Q4KJ63 - symbol:rlmB "23S rRNA (guanosine-2'-O-... 230 4.3e-21 2
TIGR_CMR|SO_3934 - symbol:SO_3934 "RNA methyltransferase,... 227 7.2e-21 2
UNIPROTKB|Q3A9P4 - symbol:CHY_2335 "RNA methyltransferase... 231 1.1e-20 2
TIGR_CMR|CHY_2335 - symbol:CHY_2335 "RNA methyltransferas... 231 1.1e-20 2
SGD|S000005727 - symbol:MRM1 "Ribose methyltransferase th... 223 1.8e-19 3
WB|WBGene00012864 - symbol:Y45F3A.9 species:6239 "Caenorh... 240 1.8e-19 1
UNIPROTKB|P63177 - symbol:rlmB "23S rRNA 2'-O-ribose G225... 208 8.4e-19 2
ASPGD|ASPL0000044188 - symbol:AN1957 species:162425 "Emer... 181 1.2e-18 2
TIGR_CMR|SPO_1150 - symbol:SPO_1150 "RNA methyltransferas... 208 1.5e-17 2
UNIPROTKB|Q47VA9 - symbol:rlmB "23S rRNA (guanosine-2'-O-... 209 4.2e-16 1
TIGR_CMR|CPS_4616 - symbol:CPS_4616 "RNA methyltransferas... 209 4.2e-16 1
UNIPROTKB|G4NEV6 - symbol:MGG_00735 "Uncharacterized prot... 222 5.2e-15 1
TIGR_CMR|NSE_0262 - symbol:NSE_0262 "RNA methyltransferas... 186 1.3e-13 1
GENEDB_PFALCIPARUM|PFB0855c - symbol:PFB0855c "hypothetic... 195 1.5e-12 2
UNIPROTKB|O96263 - symbol:PFB0855c "Apicoplast RNA methyl... 195 1.5e-12 2
TIGR_CMR|CJE_0149 - symbol:CJE_0149 "RNA methyltransferas... 143 1.8e-07 1
UNIPROTKB|K7EJT9 - symbol:MRM1 "rRNA methyltransferase 1,... 103 7.0e-07 2
TIGR_CMR|BA_4805 - symbol:BA_4805 "RNA methyltransferase,... 117 6.2e-06 2
TAIR|locus:2130310 - symbol:AT4G15520 species:3702 "Arabi... 101 0.00015 2
TAIR|locus:2121075 - symbol:AT4G38020 species:3702 "Arabi... 113 0.00017 2
UNIPROTKB|Q9F5K6 - symbol:aviRb "23S rRNA (uridine(2479)-... 122 0.00026 2
UNIPROTKB|Q9KTT5 - symbol:VC_0803 "RNA methyltransferase,... 108 0.00030 2
TIGR_CMR|VC_0803 - symbol:VC_0803 "RNA methyltransferase,... 108 0.00030 2
UNIPROTKB|P0AGJ5 - symbol:yfiF "predicted methyltransfera... 114 0.00051 2
UNIPROTKB|P0AGJ2 - symbol:trmH species:83333 "Escherichia... 103 0.00083 2
DICTYBASE|DDB_G0275919 - symbol:DDB_G0275919 "tRNA/rRNA m... 106 0.00095 3
>TAIR|locus:2051910 [details] [associations]
symbol:AT2G19870 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0008173
"RNA methyltransferase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0009507 EMBL:CP002685 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 TIGRFAMs:TIGR00186
HSSP:P39290 EMBL:AY062730 EMBL:AF499436 IPI:IPI00523741
RefSeq:NP_849992.1 UniGene:At.27254 ProteinModelPortal:Q8W497
PRIDE:Q8W497 EnsemblPlants:AT2G19870.1 GeneID:816506
KEGG:ath:AT2G19870 TAIR:At2g19870 HOGENOM:HOG000238264
InParanoid:Q8W497 OMA:WQEATES PhylomeDB:Q8W497
ProtClustDB:CLSN2720885 Genevestigator:Q8W497 Uniprot:Q8W497
Length = 589
Score = 1217 (433.5 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 237/335 (70%), Positives = 284/335 (84%)
Query: 241 DSKWNKRRNSFRR-DVKAR-TEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVG 298
+++W++ +N F R DV+ + + Y+ WNRQE+ GR TW+EA S+VP++ GE +YGV
Sbjct: 261 NTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVS 320
Query: 299 PVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
PVLAALS REFYALYVQEGL LSSNNRKKKDKKG+E+VLK++E +G++IKETSKHDLN
Sbjct: 321 PVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN 380
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
MV NRPHQGLVLDASPLE+VK+KELDPIS++E++ SLWVALDEVTDPQNLGAIIRSAYF
Sbjct: 381 MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYF 440
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
FGA+GVV+CAKNSAPLS VVSKAS+GSLE+MELRYC NMMQFL +SAENGWRV+GGSVS
Sbjct: 441 FGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSP 500
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
KAV LNE+ PG PTILVLG+EGTGLRPLVERSCT LVRI GN+P +V E DD + +G
Sbjct: 501 KAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEG- 559
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
F+SF+AVESLNVSVAAG+ LHHL+G++ S
Sbjct: 560 ------FRSFLAVESLNVSVAAGLFLHHLIGNKAS 588
Score = 69 (29.3 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 1 MYSNLTSSQALSLATRISSEPTRFFKYI-YTKSQSLPMGSVSKRPLNPSFISFS 53
MY NLT SQ +A R+S + T + ++KS LP+ K LNP +F+
Sbjct: 1 MYCNLTRSQGFPMAIRVSLQQTTIKSCLQFSKSSYLPV----KFHLNPKGSTFA 50
>ZFIN|ZDB-GENE-060526-229 [details] [associations]
symbol:mrm1 "mitochondrial rRNA methyltransferase 1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
InterPro:IPR001537 InterPro:IPR004441 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 ZFIN:ZDB-GENE-060526-229
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
TIGRFAMs:TIGR00186 GeneTree:ENSGT00390000018761 EMBL:CR753838
EMBL:CR753837 IPI:IPI00612311 Ensembl:ENSDART00000083137
ArrayExpress:F1QG96 Bgee:F1QG96 Uniprot:F1QG96
Length = 291
Score = 351 (128.6 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 90/272 (33%), Positives = 145/272 (53%)
Query: 255 VKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYAL 314
+ + +K ++ + E+S + K++ P+ + E ++GV P L AL+ R L
Sbjct: 1 LSSELQKLRFEDLSESESS--SIRKDSQPNQDKEF--EIVFGVAPCLLALTRGRRSASCL 56
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDAS 374
+V+ G + ++ +V + A G+ IK +K L + + HQGL L AS
Sbjct: 57 FVKSG--------EGPERDAILRVCQEAIRRGVQIKRVNKQTLEKMCDGKVHQGLCLQAS 108
Query: 375 PLEMVKIKELDPISADE--DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
L IKE PI++ E +Q LW+ LD V DP NLGAI+RSAY+ G +V NS
Sbjct: 109 CLGF--IKEERPITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYYLGVDRIVSSINNSC 166
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG------GSVSSKAVPLNEI 486
PL+ VSKAS+G +E+M++ C+N+ + + E GW+V+G GS S + ++
Sbjct: 167 PLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLEEGSSQSNVLSCSDF 226
Query: 487 PPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+PT+L++G EG GL + + C L+ IP
Sbjct: 227 KMSRPTLLLMGGEGDGLSSELRQLCDVLITIP 258
Score = 71 (30.1 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 551 VESLNVSVAAGVLLHHLVGHQVSN 574
VESLNVSVA G+LLH L+ + N
Sbjct: 267 VESLNVSVATGILLHSLLSTRKGN 290
>UNIPROTKB|F1NX84 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00390000018761
OMA:LCRYQVH EMBL:AADN02025757 EMBL:AADN02025758 IPI:IPI00812536
Ensembl:ENSGALT00000008680 Uniprot:F1NX84
Length = 317
Score = 334 (122.6 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 88/261 (33%), Positives = 141/261 (54%)
Query: 269 RQENSGRTTWKEAAPSTVPKMVG-EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNR 327
R+ + GR E + + G E L+GV P ALS R+ + L+++ S +
Sbjct: 32 REASKGRRR-PEGRALPIERTRGSEILFGVAPCSMALSQARRDLFRLFLKR----SGGPQ 86
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD-P 386
+ E VL+ A G+ + + +L+ + G R HQG+ L+A+PL +++E + P
Sbjct: 87 RLVTS---EFVLQAAAR-GVPVLHVGRRELDTLCGGRVHQGVCLEATPLRFKRLEEAEEP 142
Query: 387 ISADEDQAS---LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
D + + LW+AL+++ DP NLGA++RSAYF G VV +NS PL+ VSKASS
Sbjct: 143 GLGDGESPNRQLLWLALEQIQDPMNLGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASS 202
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV---PLN---EIPPGQPTILVLG 497
G++E+ ++ +++ FL + A GW V+G S+ V P+ E +P ILV+G
Sbjct: 203 GAMEVFDVYSTDDLRSFLKAKAAEGWEVVGTVSQSETVENVPVISCLEFRWNKPIILVIG 262
Query: 498 SEGTGLRPLVERSCTHLVRIP 518
SEG GL + C ++ IP
Sbjct: 263 SEGDGLSLETQLLCHQMLVIP 283
Score = 71 (30.1 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 551 VESLNVSVAAGVLLHHLVGHQVSNN 575
+ESLNVSVA G+LLH + ++ N+
Sbjct: 292 IESLNVSVATGILLHSICSQKLRNS 316
>DICTYBASE|DDB_G0277479 [details] [associations]
symbol:DDB_G0277479 "rRNA methyltransferase,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0008173
"RNA methyltransferase activity" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
dictyBase:DDB_G0277479 GO:GO:0005739 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000020 GO:GO:0008173
GO:GO:0001510 KO:K15507 RefSeq:XP_642670.1
ProteinModelPortal:Q76NT0 EnsemblProtists:DDB0169271 GeneID:8621087
KEGG:ddi:DDB_G0277479 eggNOG:COG0566 Uniprot:Q76NT0
Length = 531
Score = 284 (105.0 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 60/141 (42%), Positives = 87/141 (61%)
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ D+ LW+ LDE+ DPQN+GAIIR+ FF GVV+ KNS+P++ SK+SSG+ E
Sbjct: 368 NNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESF 427
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSV-----SSKAVPLNEIPPGQPTILVLGSEGTGLR 504
+ ++ FL SS NGW V+G S+ + + +N+I QPTIL+LG+EG GL+
Sbjct: 428 VINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGNEGFGLK 487
Query: 505 PLVERSCTHLVRIPG-NIPVD 524
P V C ++I G N +D
Sbjct: 488 PSVLEICNKTIKIVGGNYKID 508
Score = 97 (39.2 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
+K+ ++++K + + I ++ +K L+ RPHQG++LDASPL ++ I L+
Sbjct: 284 RKNLVALKEIVKNSFKLKIPVRSVNKGTLDSFSKGRPHQGIILDASPLTLLNIDFLEKFD 343
Query: 389 ADE 391
+E
Sbjct: 344 INE 346
Score = 68 (29.0 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAAL 304
N N+FR + + EY + N ++S + K + + + +YG+ PV AL
Sbjct: 123 NSNDNNFRNN-NNNNRRTEYYK-NDFDSSKYISNKPEI--RIFDLHEQAVYGINPVWVAL 178
Query: 305 SAKTREFYALYV 316
S+ R F ALYV
Sbjct: 179 SSGNRTFNALYV 190
Score = 58 (25.5 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 551 VESLNVSVAAGVLLHHLV 568
++SLNVSV +G+L+H L+
Sbjct: 507 IDSLNVSVTSGILIHTLL 524
>UNIPROTKB|E2RN23 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0005739 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
GeneTree:ENSGT00390000018761 OMA:LIGFHAV EMBL:AAEX03006610
Ensembl:ENSCAFT00000028320 Uniprot:E2RN23
Length = 346
Score = 347 (127.2 bits), Expect = 3.0e-31, P = 3.0e-31
Identities = 105/309 (33%), Positives = 158/309 (51%)
Query: 269 RQENSGRTTWKEAAP-STVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNR 327
R E R + AP S P+ + E L+G+ P L AL A R L +Q G S R
Sbjct: 29 RGEELSRLLLDDLAPTSRSPRGL-ELLFGLAPCLLALRAARRRVARLLLQAGRSGLQGER 87
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
+ +L+ AE I + + L+ + ++ HQG+ ++ SPL+ E++
Sbjct: 88 AE--------LLREAEARDIPVLRPRRQKLDALCRHQVHQGVCMEVSPLKPRPWTEVEEA 139
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+D LW+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E
Sbjct: 140 RPGDDPRRLWLVLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAME 199
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLG--GSVS---SKAVPLN---EIPPGQPTILVLGSE 499
+M++ +++ FL + A GW V G G S +P+ E QPT+LVLG+E
Sbjct: 200 VMDVFSTDDLAGFLQAKARQGWLVAGTVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNE 259
Query: 500 GTGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSV 558
G+GL V+ SC L+ I PG + G +ESLNVSV
Sbjct: 260 GSGLSQAVQASCQLLLTILPGR---QLPPG----------------------LESLNVSV 294
Query: 559 AAGVLLHHL 567
AAG+LLH +
Sbjct: 295 AAGILLHSI 303
>UNIPROTKB|A7MBD2 [details] [associations]
symbol:MRM1 "MRM1 protein" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 CTD:79922
HOGENOM:HOG000004826 HOVERGEN:HBG081986
GeneTree:ENSGT00390000018761 OMA:LCRYQVH EMBL:DAAA02048419
EMBL:BC151494 IPI:IPI00717416 RefSeq:NP_001094596.1
UniGene:Bt.32975 STRING:A7MBD2 Ensembl:ENSBTAT00000013616
GeneID:526282 KEGG:bta:526282 InParanoid:A7MBD2 NextBio:20874335
Uniprot:A7MBD2
Length = 360
Score = 342 (125.4 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 106/319 (33%), Positives = 164/319 (51%)
Query: 265 QRWNRQ--ENSGRTTWKEAAPSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGL 320
+RW R E GR + A ++P+ G E L+G+ P L AL A R L +Q
Sbjct: 28 RRWGRPGGEELGRLPLDDLA--SMPRSAGGPELLFGLSPCLLALRAARRRVARLLLQACR 85
Query: 321 SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVK 380
S R + +L+ AE I + + +L+++ ++ HQG+ ++ SPL
Sbjct: 86 SGLQGQRAE--------LLRAAEERAIPVLRPRRRELDVLCRHQVHQGVCMEVSPLRPRP 137
Query: 381 IKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSK 440
E + +D LW+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSK
Sbjct: 138 WAEAEVARPGDDPQQLWLVLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSK 197
Query: 441 ASSGSLELMELRYCNNMMQFLVSSAENGWRVLG--G------SVSSKAVPLNEIPP---G 489
AS+G++E+M++ +++ FL + A GW V G G ++SSK +P+
Sbjct: 198 ASAGAMEVMDVFSTDDLAGFLQARARQGWLVAGTVGCPGPEIALSSK-IPVTRCLDFLWD 256
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
+PT+LVLG+EG+GL V+ SC L+ I PG + G
Sbjct: 257 RPTLLVLGNEGSGLSRAVQASCQLLLTILPGR---QLPPG-------------------- 293
Query: 549 MAVESLNVSVAAGVLLHHL 567
+ESLNVSVAAG+LLH +
Sbjct: 294 --LESLNVSVAAGILLHSI 310
>UNIPROTKB|F1S1B8 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 CTD:79922
GeneTree:ENSGT00390000018761 OMA:LCRYQVH EMBL:CU694881
RefSeq:NP_001231751.1 UniGene:Ssc.42962 Ensembl:ENSSSCT00000019255
GeneID:100513493 KEGG:ssc:100513493 Uniprot:F1S1B8
Length = 361
Score = 342 (125.4 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 101/294 (34%), Positives = 150/294 (51%)
Query: 287 PKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN 344
P+ G E L+G+ P L AL A R L +Q G S R + +L++AE
Sbjct: 50 PRSAGGLELLFGLSPCLLALRAARRRVARLLLQAGRSGLQGERAE--------LLRVAEA 101
Query: 345 MGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVT 404
I + + L+++ + HQG+ ++ SPL E +D LW+ L+ +
Sbjct: 102 RDIPVLRPRRRKLDVLCRYQVHQGVCMEVSPLRPQPWAEAGESRPGDDPQQLWLVLEGLQ 161
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DP+NLGA++RSA+F G V+ KNS PL+ VVSKAS+G++E+M++ +++ FL +
Sbjct: 162 DPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAK 221
Query: 465 AENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHL 514
A GW V G G + P +E+P QPT+LVLG+EG+GL V+ SC L
Sbjct: 222 ARQGWLVAGTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSREVQASCQLL 281
Query: 515 VRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ I PG + G +ESLNVSVAAG+LLH +
Sbjct: 282 LTILPGR---QLPPG----------------------LESLNVSVAAGILLHSI 310
>RGD|1566232 [details] [associations]
symbol:Mrm1 "mitochondrial rRNA methyltransferase 1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 RGD:1566232 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
EMBL:CH473948 GO:GO:0008173 GO:GO:0001510 KO:K15507 CTD:79922
OrthoDB:EOG45QHDH GeneTree:ENSGT00390000018761 IPI:IPI00368083
RefSeq:NP_001102302.1 UniGene:Rn.43486 Ensembl:ENSRNOT00000030885
GeneID:363661 KEGG:rno:363661 NextBio:683925 Uniprot:D3ZK81
Length = 320
Score = 341 (125.1 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 102/287 (35%), Positives = 150/287 (52%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+GV P L AL A R L +Q G + R + +L++AE GI +
Sbjct: 48 ERLFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAE--------LLRVAEARGIPVLR 99
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + G + HQG+ ++ S L E S+ +D LW+ L+ + DP+NLGA
Sbjct: 100 PRRQKLDALCGYQVHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGA 159
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSAYF G V+ +NS PL+ VVSKAS+G++E+M++ ++ FL + A+ GW V
Sbjct: 160 VMRSAYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLV 219
Query: 472 LG--G------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
+G G S SSK VP+ E +PT+LVLG+EG+GL V +C L+ I
Sbjct: 220 VGTVGCPGPEISQSSK-VPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTI--- 275
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+P G H +ESLNVSVA G+LLH +
Sbjct: 276 LP--------------GRHLPP-------GLESLNVSVATGILLHSI 301
>MGI|MGI:2443470 [details] [associations]
symbol:Mrm1 "mitochondrial rRNA methyltransferase 1 homolog
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008168 "methyltransferase activity" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 MGI:MGI:2443470
GO:GO:0005739 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AL596083 KO:K15507 eggNOG:COG0566 CTD:79922
HOGENOM:HOG000004826 HOVERGEN:HBG081986 OrthoDB:EOG45QHDH
EMBL:AK156416 EMBL:AK164059 EMBL:AK163986 EMBL:BC005625
IPI:IPI00653261 RefSeq:NP_663408.2 UniGene:Mm.280825
ProteinModelPortal:Q99J25 SMR:Q99J25 STRING:Q99J25
PhosphoSite:Q99J25 PRIDE:Q99J25 Ensembl:ENSMUST00000018549
GeneID:217038 KEGG:mmu:217038 UCSC:uc007kqr.1
GeneTree:ENSGT00390000018761 InParanoid:Q99J25 OMA:LIGFHAV
ChiTaRS:MRM1 NextBio:375526 Bgee:Q99J25 Genevestigator:Q99J25
Uniprot:Q99J25
Length = 320
Score = 338 (124.0 bits), Expect = 3.1e-30, P = 3.1e-30
Identities = 102/287 (35%), Positives = 150/287 (52%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+G+ P L AL A R L +Q G + R + +L++AE GI +
Sbjct: 48 ERLFGLSPCLLALRAARRRVARLLLQAGKAGLQGERAE--------LLRVAEARGIPVLR 99
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + G + HQG+ ++ SPL E S+ +D LW+ L+ + DP+NLGA
Sbjct: 100 PRRQKLDALCGYQVHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGA 159
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ ++ FL + A+ GW V
Sbjct: 160 VMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAQQGWLV 219
Query: 472 LG--G------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
+G G S SSK VP+ E +PT+LVLGSEG+GL V SC L+ I
Sbjct: 220 VGTVGCPGPEISQSSK-VPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTI--- 275
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+P H +ESLNVSVA G+LLH +
Sbjct: 276 LP--------------RRHLPP-------GLESLNVSVATGILLHSI 301
>UNIPROTKB|Q6IN84 [details] [associations]
symbol:MRM1 "rRNA methyltransferase 1, mitochondrial"
species:9606 "Homo sapiens" [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0005739 EMBL:CH471199 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 eggNOG:COG0566 EMBL:AK026231
EMBL:AK292307 EMBL:CR457357 EMBL:BC009416 EMBL:BC072411
IPI:IPI00784477 IPI:IPI00827737 RefSeq:NP_079140.2
UniGene:Hs.194864 HSSP:P63177 ProteinModelPortal:Q6IN84 SMR:Q6IN84
STRING:Q6IN84 PhosphoSite:Q6IN84 DMDM:74736506 PRIDE:Q6IN84
DNASU:79922 Ensembl:ENST00000250156 GeneID:79922 KEGG:hsa:79922
UCSC:uc002hne.3 UCSC:uc002hnf.3 CTD:79922 GeneCards:GC17P034958
H-InvDB:HIX0202428 HGNC:HGNC:26202 HPA:HPA021598 neXtProt:NX_Q6IN84
PharmGKB:PA142671338 HOGENOM:HOG000004826 HOVERGEN:HBG081986
InParanoid:Q6IN84 OMA:IMGAEGK OrthoDB:EOG45QHDH GenomeRNAi:79922
NextBio:69826 Bgee:Q6IN84 CleanEx:HS_MRM1 Genevestigator:Q6IN84
TIGRFAMs:TIGR00186 Uniprot:Q6IN84
Length = 353
Score = 336 (123.3 bits), Expect = 5.3e-30, P = 5.3e-30
Identities = 99/292 (33%), Positives = 151/292 (51%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S++ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
I +P + Q +ESLNVSVAAG+LLH +
Sbjct: 276 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSI 303
>UNIPROTKB|P96861 [details] [associations]
symbol:MT3685 "Uncharacterized tRNA/rRNA methyltransferase
Rv3579c/MT3685" species:1773 "Mycobacterium tuberculosis"
[GO:0040007 "growth" evidence=IMP] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842583 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 HSSP:P63177
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218 PIR:A70607
RefSeq:NP_218096.1 RefSeq:NP_338229.1 RefSeq:YP_006517069.1
ProteinModelPortal:P96861 SMR:P96861 PRIDE:P96861
EnsemblBacteria:EBMYCT00000001979 EnsemblBacteria:EBMYCT00000069688
GeneID:13317188 GeneID:888317 GeneID:926535 KEGG:mtc:MT3685
KEGG:mtu:Rv3579c KEGG:mtv:RVBD_3579c PATRIC:18129859
TubercuList:Rv3579c OMA:NITDPRN ProtClustDB:CLSK792577
Uniprot:P96861
Length = 322
Score = 266 (98.7 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 75/227 (33%), Positives = 117/227 (51%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGVPAT-ALYVALGT--------EADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL-VALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGG-GTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP 282
Score = 50 (22.7 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 552 ESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 288 ESLNASVAAGVVL 300
Score = 40 (19.1 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 117 RVDERSPVLRAGRPLASLKSNKVKEAKRLG 146
R R PV RA L N V E R G
Sbjct: 54 RAQPRRPVKRADETETVLGRNPVLECLRAG 83
>POMBASE|SPBC1347.13c [details] [associations]
symbol:SPBC1347.13c "ribose methyltransferase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0008989 "rRNA
(guanine-N1-)-methyltransferase activity" evidence=ISS]
InterPro:IPR001537 InterPro:IPR004441 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 PomBase:SPBC1347.13c
GO:GO:0005783 GO:GO:0005739 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 GO:GO:0008989 KO:K15507 eggNOG:COG0566 HSSP:P63177
TIGRFAMs:TIGR00186 PIR:T39401 RefSeq:NP_596705.1
ProteinModelPortal:O94631 STRING:O94631 EnsemblFungi:SPBC1347.13c.1
GeneID:2539800 KEGG:spo:SPBC1347.13c HOGENOM:HOG000218798
OMA:SESCTIT OrthoDB:EOG4W6S4P NextBio:20800949 Uniprot:O94631
Length = 301
Score = 263 (97.6 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 87/252 (34%), Positives = 127/252 (50%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS-IK 350
E ++G V AL+ + RE ALYVQ + S + +K Y+ +K ++ I
Sbjct: 32 EFVFGTHSVKNALATRKRECRALYVQNA-DIHSEFEEFLNKLQYKIPIKSVNKEHLNQIT 90
Query: 351 ETSKHD---LNMVVGNRPH-QGLVLDASPLEMVKIKELDP--------ISADEDQASLWV 398
H+ L N P L+ A K + P S+ ++ L+V
Sbjct: 91 ACRPHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPHNDLNEGKSSSSDNYPPLYV 150
Query: 399 ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMM 458
+D +TDPQN+GA+IRSAY GA G++L K++ LS VVSKAS+G+LE+ + + N M
Sbjct: 151 YVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEVFNISHVKNPM 210
Query: 459 QFLVSSAENGWRVLGGSVSSKAVPLNE---IPP--------GQPTILVLGSEGTGLRPLV 507
FL +S GW+V+G + A+P N+ P +P ILVLGSE GLR +
Sbjct: 211 VFLRNSVLKGWKVIG---TKPALPDNKDQIYTPHKIKTELMNEPKILVLGSE-KGLRTNI 266
Query: 508 ERSCTHLVRIPG 519
C+H V IPG
Sbjct: 267 LTQCSHYVSIPG 278
Score = 66 (28.3 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 551 VESLNVSVAAGVLLHHLV 568
V+SLNVSVAAG+LL+ LV
Sbjct: 283 VDSLNVSVAAGILLYSLV 300
>TIGR_CMR|GSU_1462 [details] [associations]
symbol:GSU_1462 "RNA methyltransferase, TrmH family, group
3" species:243231 "Geobacter sulfurreducens PCA" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
KO:K03218 OMA:NITDPRN RefSeq:NP_952513.1 ProteinModelPortal:Q74D57
GeneID:2686213 KEGG:gsu:GSU1462 PATRIC:22025767
ProtClustDB:CLSK828365 BioCyc:GSUL243231:GH27-1441-MONOMER
Uniprot:Q74D57
Length = 245
Score = 271 (100.5 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 72/230 (31%), Positives = 115/230 (50%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E LYG+ V+ AL R F L+V +R+ D++ EK+L A G+
Sbjct: 1 MKEEILYGINSVMEALRGSRRAF-ELFV---------SRETHDRRT-EKLLAFAAERGVP 49
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
++ K DL + G HQG+ L ++++ + L + LD + DP N
Sbjct: 50 VRTRDKRDLARLCGTDHHQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA+IRSA GA GV++ +A ++ V K S+G+ E + + N++Q L + E G
Sbjct: 110 LGALIRSAACAGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEG 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G + S+ + + G ++V+G EG G+RPLV + C LV IP
Sbjct: 170 FWAFGTADSAASSLYSHDLTGN-VVIVIGGEGEGVRPLVRKKCDFLVAIP 218
Score = 53 (23.7 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 551 VESLNVSVAAGVLLHHLVGHQVS 573
V SLN SVA GV+L +V ++S
Sbjct: 223 VSSLNASVAGGVVLFEVVRQRLS 245
>UNIPROTKB|Q9KNY2 [details] [associations]
symbol:rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase
RlmB" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01887
InterPro:IPR001537 InterPro:IPR004441 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218
InterPro:IPR024915 ProtClustDB:PRK11181 PIR:B82055
RefSeq:NP_232226.1 ProteinModelPortal:Q9KNY2 SMR:Q9KNY2
DNASU:2615615 GeneID:2615615 KEGG:vch:VC2598 PATRIC:20084222
OMA:SARDTHY Uniprot:Q9KNY2
Length = 247
Score = 254 (94.5 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 73/231 (31%), Positives = 111/231 (48%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++ D+ VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG--------RQDDR--LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
W V G+ + + +V+G+EG G+R L +C L++IP
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP 218
Score = 57 (25.1 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 550 AVESLNVSVAAGVLLHHLVGHQVSN 574
+V SLNVSVA GV L V +++N
Sbjct: 222 SVSSLNVSVACGVCLFEAVRQRMAN 246
>TIGR_CMR|VC_2598 [details] [associations]
symbol:VC_2598 "RNA methyltransferase, TrmH family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009451 "RNA
modification" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218 InterPro:IPR024915
ProtClustDB:PRK11181 PIR:B82055 RefSeq:NP_232226.1
ProteinModelPortal:Q9KNY2 SMR:Q9KNY2 DNASU:2615615 GeneID:2615615
KEGG:vch:VC2598 PATRIC:20084222 OMA:SARDTHY Uniprot:Q9KNY2
Length = 247
Score = 254 (94.5 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 73/231 (31%), Positives = 111/231 (48%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++ D+ VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG--------RQDDR--LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
W V G+ + + +V+G+EG G+R L +C L++IP
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP 218
Score = 57 (25.1 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 550 AVESLNVSVAAGVLLHHLVGHQVSN 574
+V SLNVSVA GV L V +++N
Sbjct: 222 SVSSLNVSVACGVCLFEAVRQRMAN 246
>TIGR_CMR|CBU_0986 [details] [associations]
symbol:CBU_0986 "RNA methyltransferase, TrmH family, group
3" species:227377 "Coxiella burnetii RSA 493" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
RefSeq:NP_819993.2 ProteinModelPortal:Q83CW6 SMR:Q83CW6
GeneID:1208881 KEGG:cbu:CBU_0986 PATRIC:17930695 KO:K03218
ProtClustDB:CLSK914460 BioCyc:CBUR227377:GJ7S-979-MONOMER
InterPro:IPR024915 Uniprot:Q83CW6
Length = 250
Score = 244 (91.0 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 67/227 (29%), Positives = 112/227 (49%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
+ +YG+ V L A + LYVQE NR D + + +++ A+ +G+ +
Sbjct: 5 KSIYGIHAVSGVLDAAPQRIVKLYVQE-------NR---DDQRLQSLVEKAKALGVKVIL 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA
Sbjct: 55 LSRTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA FG V+ + ++ VV K + G+ E+ N+ + + + G +
Sbjct: 114 CLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWI 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G +V ++ + + EI +VLGSEG GLR L + C L +IP
Sbjct: 174 VGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP 219
Score = 55 (24.4 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 550 AVESLNVSVAAGVLLHHL 567
+VESLNVSVA G+ L+ +
Sbjct: 223 SVESLNVSVACGICLYEV 240
>TIGR_CMR|ECH_0404 [details] [associations]
symbol:ECH_0404 "RNA methyltransferase, TrmH family, group
3" species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0008173
"RNA methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 TIGRFAMs:TIGR00186
OMA:LIGFHAV KO:K03218 HOGENOM:HOG000218801 RefSeq:YP_507224.1
ProteinModelPortal:Q2GH59 STRING:Q2GH59 GeneID:3927516
KEGG:ech:ECH_0404 PATRIC:20576285 ProtClustDB:CLSK749570
BioCyc:ECHA205920:GJNR-405-MONOMER Uniprot:Q2GH59
Length = 252
Score = 243 (90.6 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 63/232 (27%), Positives = 123/232 (53%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG P AAL K R+ + L V E + +NN K+L++ + I++K+ +
Sbjct: 8 IYGKHPCTAALQNKNRKCHELLVTENF-MKNNNE-------ISKILRLCKQKNINLKQVN 59
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ +N V+ N HQG+ L AS ++ ++E+ ++ ++ +++ + LD+VTD N+G+I
Sbjct: 60 PNYINSVLPHNSNHQGIALKASVIDSTTVEEV--LNTSKESSTI-ILLDQVTDIHNVGSI 116
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IRSA F ++L NS + +SK SSG+++++ + Y N++ + + G+
Sbjct: 117 IRSAVCFNVDAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCY 176
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
G L++ +++ GSE G+R L + +C L++I + +D
Sbjct: 177 GFDAKEGEF-LHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKID 227
Score = 42 (19.8 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 551 VESLNVSVAAGVLLHHL 567
++SLNVS AA V L+ +
Sbjct: 226 IDSLNVSNAAAVALYSI 242
>TIGR_CMR|APH_0275 [details] [associations]
symbol:APH_0275 "RNA methyltransferase, TrmH family, group
3" species:212042 "Anaplasma phagocytophilum HZ" [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0003723 GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 TIGRFAMs:TIGR00186
KO:K03218 HOGENOM:HOG000218801 ProtClustDB:CLSK749570
RefSeq:YP_504889.1 ProteinModelPortal:Q2GL62 STRING:Q2GL62
GeneID:3930837 KEGG:aph:APH_0275 PATRIC:20949124 OMA:MITIPMM
BioCyc:APHA212042:GHPM-307-MONOMER Uniprot:Q2GL62
Length = 258
Score = 241 (89.9 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 61/190 (32%), Positives = 108/190 (56%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLDASPL---EMVKIKELDPISADE 391
+ V+K+A+N I I++ ++ +VG++ HQG++L PL + ++ I A
Sbjct: 43 DPVIKLAKNRKIGIRDVEIAKIDSLVGSKAIHQGMLLKVLPLFGRNASSLIRIEDIVAQT 102
Query: 392 DQA--SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ A S + LDEVTD N+GA++R+A F VVL NS S ++KASSG+++++
Sbjct: 103 EAAPTSTILVLDEVTDVHNVGAVLRTAACFNVDAVVLTEHNSPSESCGMAKASSGAIDIV 162
Query: 450 ELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ L +N W G +S L+++ + +++LG+EG G+R L +
Sbjct: 163 PVVCIGNLVKTLEYLKQKNYWCY--GFDASGGTCLHQVEFSERRVVILGAEGKGMRHLTK 220
Query: 509 RSCTHLVRIP 518
+ C HLV+IP
Sbjct: 221 KHCDHLVKIP 230
Score = 39 (18.8 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 551 VESLNVSVAAGVLLH 565
+ESLNVS AA + ++
Sbjct: 235 MESLNVSNAAAIAMY 249
>TIGR_CMR|BA_0091 [details] [associations]
symbol:BA_0091 "RNA methyltransferase, TrmH family, group
3" species:198094 "Bacillus anthracis str. Ames" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186
HOGENOM:HOG000218798 KO:K03218 OMA:NITDPRN HSSP:P39290
RefSeq:NP_842659.1 RefSeq:YP_016695.1 RefSeq:YP_026377.1
ProteinModelPortal:Q81VU9 IntAct:Q81VU9 DNASU:1088222
EnsemblBacteria:EBBACT00000010027 EnsemblBacteria:EBBACT00000017271
EnsemblBacteria:EBBACT00000021093 GeneID:1088222 GeneID:2814905
GeneID:2851380 KEGG:ban:BA_0091 KEGG:bar:GBAA_0091 KEGG:bat:BAS0091
ProtClustDB:CLSK872622 BioCyc:BANT260799:GJAJ-102-MONOMER
BioCyc:BANT261594:GJ7F-104-MONOMER Uniprot:Q81VU9
Length = 247
Score = 235 (87.8 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 62/231 (26%), Positives = 118/231 (51%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E + G PV+ AL + R+ +++ EG + K + VL +A+ I
Sbjct: 1 MSSEYIIGRNPVIEALRSG-RDINKIWIAEGAA----------KGQVQIVLALAKENKII 49
Query: 349 IKETSKHDLNMVV-GNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
++ K L+ +V GN HQG++ + + ++++L ++ ++ ++ LDE+ DP
Sbjct: 50 LQHAPKKKLDQLVEGN--HQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPH 107
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLG+I+R+A GA G+++ + + L+ V+KAS+G++E + + N+ + + E
Sbjct: 108 NLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKER 167
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G + G K N + P LV+GSEG G+ ++ C L+ +P
Sbjct: 168 GLWIAGTDAKGKTDYRN-LDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLP 217
Score = 43 (20.2 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 551 VESLNVSVAAGVLLHHL 567
V SLN SVAA +L++ +
Sbjct: 222 VTSLNASVAASLLMYEV 238
>UNIPROTKB|Q4KJ63 [details] [associations]
symbol:rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase
RlmB" species:220664 "Pseudomonas protegens Pf-5" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0000451 "rRNA 2'-O-methylation"
evidence=ISS] [GO:0070039 "rRNA (guanosine-2'-O-)-methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:CP000076
GenomeReviews:CP000076_GR eggNOG:COG0566 OMA:IMGAEGK
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 GO:GO:0070039 RefSeq:YP_257720.1
ProteinModelPortal:Q4KJ63 SMR:Q4KJ63 STRING:Q4KJ63 GeneID:3481167
KEGG:pfl:PFL_0578 PATRIC:19870315 ProtClustDB:CLSK869002
BioCyc:PFLU220664:GIX8-579-MONOMER Uniprot:Q4KJ63
Length = 254
Score = 230 (86.0 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 66/227 (29%), Positives = 116/227 (51%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG S D + + ++ +A +S+ +
Sbjct: 5 EKIYGVHAVEALLRHHPKRVKQIWLAEGRS---------DPR-VQVLVDLAAQNRVSVGQ 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +++ V HQG+V + SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 55 AERREMDAWVEG-VHQGVVAEVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A GA V++ SA L+ V K + G+ E++ L N+ + L + G +
Sbjct: 114 CLRTADAAGALAVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWI 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G + ++ ++ G PTI+++G+EG G+R L C +LVR+P
Sbjct: 174 VGTAGEAEQELYDQDLTG-PTIIIMGAEGKGMRRLTREHCDYLVRLP 219
Score = 48 (22.0 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 550 AVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 223 SVSSLNVSVATGVCL 237
>TIGR_CMR|SO_3934 [details] [associations]
symbol:SO_3934 "RNA methyltransferase, TrmH family, group
3" species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
KO:K03218 InterPro:IPR024915 ProtClustDB:PRK11181
RefSeq:NP_719465.1 ProteinModelPortal:Q8EAG8 SMR:Q8EAG8
GeneID:1171572 KEGG:son:SO_3934 PATRIC:23527546 Uniprot:Q8EAG8
Length = 246
Score = 227 (85.0 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 67/226 (29%), Positives = 109/226 (48%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G+ V A L L++ +G ++D++ +++ A+ G SI+ TS
Sbjct: 7 IFGIHAVEALLKHSPERIIELWLLQG---------REDER-LTPLIRQAKAFGTSIQVTS 56
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ + HQG+V +++ +LD + A D L + LD VTDP NLGA +
Sbjct: 57 RKVLDEKAESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLI-LDGVTDPHNLGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
R+A G G+++ NS L+ VVSK + G+ E + L N+ + + E G W V
Sbjct: 116 RNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIV- 174
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G+ L + P + +G+EG GLR L C LV IP
Sbjct: 175 -GTAGEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIP 219
Score = 49 (22.3 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 550 AVESLNVSVAAGVLLHHLV 568
+V SLNVSVA G+ L V
Sbjct: 223 SVSSLNVSVATGICLFEAV 241
>UNIPROTKB|Q3A9P4 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 231 (86.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 63/193 (32%), Positives = 100/193 (51%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+R+ KDK E +L EN + + E + L+ QG+ D SP++ V+I ++
Sbjct: 25 SRETKDKNIRELLLLARENK-VPVVEVPREKLHA-----KSQGVEADISPVKYVEIDDIL 78
Query: 386 PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGS 445
I+ + + + L+ + DPQNLGAI+RSA FG GV++ + + ++G V+KAS+G+
Sbjct: 79 AIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTGAVAKASAGA 138
Query: 446 LELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ + C N+ + L E G V+G SKA L + P LV+G E GL
Sbjct: 139 YLKVPVARCTNVAETLRYLKEKGAWVVGADAKSKA-SLWDTDFKLPLALVIGGENVGLTS 197
Query: 506 LVERSCTHLVRIP 518
+ R C V IP
Sbjct: 198 HILRECDFTVSIP 210
Score = 43 (20.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 551 VESLNVSVAAGVLLHHLV 568
+ SLN SVAA +L+ +V
Sbjct: 215 INSLNASVAAALLMAEVV 232
>TIGR_CMR|CHY_2335 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 231 (86.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 63/193 (32%), Positives = 100/193 (51%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+R+ KDK E +L EN + + E + L+ QG+ D SP++ V+I ++
Sbjct: 25 SRETKDKNIRELLLLARENK-VPVVEVPREKLHA-----KSQGVEADISPVKYVEIDDIL 78
Query: 386 PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGS 445
I+ + + + L+ + DPQNLGAI+RSA FG GV++ + + ++G V+KAS+G+
Sbjct: 79 AIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTGAVAKASAGA 138
Query: 446 LELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ + C N+ + L E G V+G SKA L + P LV+G E GL
Sbjct: 139 YLKVPVARCTNVAETLRYLKEKGAWVVGADAKSKA-SLWDTDFKLPLALVIGGENVGLTS 197
Query: 506 LVERSCTHLVRIP 518
+ R C V IP
Sbjct: 198 HILRECDFTVSIP 210
Score = 43 (20.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 551 VESLNVSVAAGVLLHHLV 568
+ SLN SVAA +L+ +V
Sbjct: 215 INSLNASVAAALLMAEVV 232
>SGD|S000005727 [details] [associations]
symbol:MRM1 "Ribose methyltransferase that modifies a
functionally critical" species:4932 "Saccharomyces cerevisiae"
[GO:0032259 "methylation" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0008989 "rRNA
(guanine-N1-)-methyltransferase activity" evidence=IDA] [GO:0000154
"rRNA modification" evidence=IDA] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 SGD:S000005727 GO:GO:0005739 EMBL:BK006948
GO:GO:0003723 GO:GO:0008989 KO:K11594 EMBL:X03245
RefSeq:NP_014847.3 GeneID:854379 KEGG:sce:YOR204W
RefSeq:NP_014844.3 GeneID:854376 KEGG:sce:YOR201C KO:K15507
eggNOG:COG0566 TIGRFAMs:TIGR00186 GeneTree:ENSGT00390000018761
OrthoDB:EOG4W6S4P EMBL:L19947 EMBL:Z75107 PIR:S48881
ProteinModelPortal:P25270 SMR:P25270 DIP:DIP-2603N IntAct:P25270
MINT:MINT-425731 STRING:P25270 PaxDb:P25270 PeptideAtlas:P25270
EnsemblFungi:YOR201C CYGD:YOR201c HOGENOM:HOG000248090 OMA:AHVHARE
NextBio:976508 Genevestigator:P25270 GermOnline:YOR201C
Uniprot:P25270
Length = 412
Score = 223 (83.6 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 68/192 (35%), Positives = 103/192 (53%)
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK SSG+LEL+
Sbjct: 236 DAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELL 295
Query: 450 ELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPGQPTILVL 496
+ Y + ++F S E GW L + S K LN + P +LV+
Sbjct: 296 PIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVV 355
Query: 497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNV 556
G+E G+R T+L ++ + V++ G I+ GN + E V+SLNV
Sbjct: 356 GNESQGVR-------TNL-KMRSDFFVEIPFGGIEK----GNR-APEPI-----VDSLNV 397
Query: 557 SVAAGVLLHHLV 568
SVA +L+ +++
Sbjct: 398 SVATALLIDNIL 409
Score = 73 (30.8 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 27/112 (24%), Positives = 52/112 (46%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG V AAL +R ++ + G ++ S K L++ + + ++ +
Sbjct: 124 EYVYGTNSVYAALLNPSRNCHSRLLYHG-TIPS------------KFLQIVDELKVTTEL 170
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEV 403
KH LN++ H + L+ PL+ V+I L D D +S +++ E+
Sbjct: 171 VDKHRLNLLTNYGVHNNIALETKPLQPVEIAYL----GDMDTSSAALSIHEL 218
Score = 41 (19.5 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 2 YSNLTSSQALSLATRISSEPTRFFKYIYTKSQS 34
Y +T S +L TRI + + F K+ +S S
Sbjct: 12 YLAVTPSAHQALKTRIKKKSSSFDKFFPQQSNS 44
>WB|WBGene00012864 [details] [associations]
symbol:Y45F3A.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588
Pfam:PF08032 SMART:SM00967 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 eggNOG:COG0566
GeneTree:ENSGT00390000018761 EMBL:AL032621 PIR:T26946
RefSeq:NP_499333.1 HSSP:P39290 ProteinModelPortal:Q9XWY8 SMR:Q9XWY8
STRING:Q9XWY8 PaxDb:Q9XWY8 EnsemblMetazoa:Y45F3A.9 GeneID:3565184
KEGG:cel:CELE_Y45F3A.9 UCSC:Y45F3A.9 CTD:3565184 WormBase:Y45F3A.9
InParanoid:Q9XWY8 OMA:LCRYQVH NextBio:955513 Uniprot:Q9XWY8
Length = 294
Score = 240 (89.5 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 86/294 (29%), Positives = 149/294 (50%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP++ GE L+G+ VL A+ + R+F+++++++ + NR D + +++L + +
Sbjct: 37 VPELQGEALFGLHSVLEAIRSGKRDFHSVFLKKAVE----NRADSDAR-IKEILSRIDEL 91
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
GI + L+ + + H G+ +DAS L+ +P + S++V D+V D
Sbjct: 92 GIQKTLLTDDQLDRLTEFQLHNGICMDASALQF---SNFEPKTV-----SIFV--DKVLD 141
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAP--LSGVVSKASSGSLELMELRYCNNMMQF--- 460
P NLGAI RSA++FGA G+ L K P ++ + K+S G+LE + ++ N +F
Sbjct: 142 PGNLGAIGRSAWYFGADGLGL-VKGRGPKSITPAMIKSSCGALEHLPVQQFLNFNEFRDK 200
Query: 461 -------LVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
LV++ + G G +S+K+ L++ P +P +VLG EG G+ + C
Sbjct: 201 IKAAGGELVATCDPGAAEKAG-ISAKS--LDQWTPEKPVGIVLGDEGVGISRGILNLCDT 257
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++ I V DG++ V SLNVSV AG+LLHH+
Sbjct: 258 VI-------------SISPVRKDGSN-----------VTSLNVSVVAGILLHHI 287
>UNIPROTKB|P63177 [details] [associations]
symbol:rlmB "23S rRNA 2'-O-ribose G2251 methyltransferase
monomer" species:83333 "Escherichia coli K-12" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070039 "rRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IMP] [GO:0000453 "enzyme-directed rRNA 2'-O-methylation"
evidence=IMP] HAMAP:MF_01887 InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 EMBL:U14003 eggNOG:COG0566
OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 PIR:S56405 RefSeq:NP_418601.1 RefSeq:YP_492322.1
PDB:1GZ0 PDBsum:1GZ0 ProteinModelPortal:P63177 SMR:P63177
DIP:DIP-47866N IntAct:P63177 PaxDb:P63177 PRIDE:P63177
EnsemblBacteria:EBESCT00000002779 EnsemblBacteria:EBESCT00000017925
GeneID:12932817 GeneID:948694 KEGG:ecj:Y75_p4066 KEGG:eco:b4180
PATRIC:32123935 EchoBASE:EB2376 EcoGene:EG12483
ProtClustDB:PRK11181 BioCyc:EcoCyc:G7845-MONOMER
BioCyc:ECOL316407:JW4138-MONOMER BioCyc:MetaCyc:G7845-MONOMER
EvolutionaryTrace:P63177 Genevestigator:P63177 GO:GO:0070039
GO:GO:0000453 Uniprot:P63177
Length = 243
Score = 208 (78.3 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
Identities = 64/230 (27%), Positives = 105/230 (45%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG+ V A L F +++ +G ++DK+ ++ E+ G+ I
Sbjct: 1 MSEMIYGIHAVQALLERAPERFQEVFILKG---------REDKR-LLPLIHALESQGVVI 50
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
+ ++ L+ HQG++ P + +L + A DQ L + LD VTDP NL
Sbjct: 51 QLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLI-LDGVTDPHNL 109
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL-VSSAENG 468
GA +RSA G V++ SA L+ K + G+ E + L N+ + + + EN
Sbjct: 110 GACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENI 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
W V G+ L + LV+G+EG G+R L C L+ IP
Sbjct: 170 WIV--GTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIP 217
Score = 49 (22.3 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 550 AVESLNVSVAAGVLLHHLV 568
+V SLNVSVA G+ L V
Sbjct: 221 SVSSLNVSVATGICLFEAV 239
>ASPGD|ASPL0000044188 [details] [associations]
symbol:AN1957 species:162425 "Emericella nidulans"
[GO:0006547 "histidine metabolic process" evidence=RCA] [GO:0008168
"methyltransferase activity" evidence=RCA] [GO:0000154 "rRNA
modification" evidence=IEA] [GO:0008989 "rRNA
(guanine-N1-)-methyltransferase activity" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:BN001307 GO:GO:0003723 GO:GO:0006396
EMBL:AACD01000029 GO:GO:0008173 GO:GO:0001510 KO:K15507
eggNOG:COG0566 OrthoDB:EOG4W6S4P RefSeq:XP_659561.1
ProteinModelPortal:Q5BBX3 EnsemblFungi:CADANIAT00008617
GeneID:2875238 KEGG:ani:AN1957.2 HOGENOM:HOG000192841 OMA:SEFIYGT
Uniprot:Q5BBX3
Length = 617
Score = 181 (68.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 58/172 (33%), Positives = 79/172 (45%)
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
V L+ V D NLG+IIRSAY+ G +V ++SAPLS V KAS+G+ E M L N
Sbjct: 331 VLLEGVVDTGNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTIKASAGAAENMTLLDVQNE 390
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLV 515
+ F+ S NGWR V E PG QP + +EG + + ++
Sbjct: 391 VDFIKRSQANGWRFYAADVPKTGATYLE--PGALQPPGSAVANEGHPDALIGQSPSVIMM 448
Query: 516 RIPGNIPVDVTAGEIDD-VDADGNH--GSAEQFQSFMAVESLNVSVAAGVLL 564
G+ + G D V G V+SLNVSVAA +L+
Sbjct: 449 GYEGSGLSNHIKGRADSIVSIPGARLLPGVGAASDPARVDSLNVSVAAALLM 500
Score = 124 (48.7 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 40/148 (27%), Positives = 69/148 (46%)
Query: 256 KARTEKPEYQRWNRQENSGRTTWKEAAPSTVP--KMVGEGLYGVGPVLAALSAKTREFYA 313
K R+ + E+ + +EN R P T+P E +YG V AAL R+ Y
Sbjct: 157 KRRSRRIEHHK-PTEENPERVKQHVWVPPTIPYTTSASEFIYGTTAVEAALRCCKRQLYK 215
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK--ETSKHDLNMVVGNRPHQGLVL 371
LY+ + + DK+ K L +++N+ + + E ++ L+ + RPH G VL
Sbjct: 216 LYLYQ---TAGEEELSADKRVLRK-LALSKNVKVKLAFGEWNRL-LDKMSAGRPHNGCVL 270
Query: 372 DASPLEMVKIKELDPISADEDQASLWVA 399
+ SPL I+ L P+ + + + +A
Sbjct: 271 EVSPLPRTPIQALRPVQLGDGEFKVELA 298
>TIGR_CMR|SPO_1150 [details] [associations]
symbol:SPO_1150 "RNA methyltransferase, TrmH family, group
3" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186 KO:K03218
HOGENOM:HOG000218801 OMA:MITIPMM RefSeq:YP_166400.1
ProteinModelPortal:Q5LUA5 GeneID:3195708 KEGG:sil:SPO1150
PATRIC:23375603 ProtClustDB:CLSK933444 Uniprot:Q5LUA5
Length = 257
Score = 208 (78.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 56/154 (36%), Positives = 78/154 (50%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQG L+ PL + E+ I A+ + L LD VTDP N+GAI+RSA GAS V+
Sbjct: 83 HQGAALEVKPLNWGSLAEV-AIGAENPRVIL---LDRVTDPHNVGAILRSAEVLGASAVI 138
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPL 483
+SAP +G ++K +SG+LE N+ + G+ VLG G S
Sbjct: 139 GTRHHSAPETGALAKTASGALERQPYLRMRNLADAITELQGMGYLVLGLDGEASETIEAA 198
Query: 484 NEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+P LVLG+EG GLR + + LV+I
Sbjct: 199 LAGQTDRPVALVLGAEGPGLRQKTKETVDKLVKI 232
Score = 37 (18.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 553 SLNVSVAAGVLLHHLVGH 570
SLNVS AA + L+ H
Sbjct: 240 SLNVSNAAAIALYASKAH 257
>UNIPROTKB|Q47VA9 [details] [associations]
symbol:rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase
RlmB" species:167879 "Colwellia psychrerythraea 34H" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] [GO:0031167 "rRNA
methylation" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008649 eggNOG:COG0566 OMA:IMGAEGK
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 ProtClustDB:PRK11181 GO:GO:0070039
RefSeq:YP_271263.1 ProteinModelPortal:Q47VA9 SMR:Q47VA9
STRING:Q47VA9 GeneID:3522591 KEGG:cps:CPS_4616 PATRIC:21472055
BioCyc:CPSY167879:GI48-4625-MONOMER GO:GO:0000451 Uniprot:Q47VA9
Length = 251
Score = 209 (78.6 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 59/231 (25%), Positives = 113/231 (48%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++G+ V A ++A F +++ +G ++ D+ ++ ++ GI +
Sbjct: 6 ELVFGIHAVNALINAAPERFIEIWLLKG--------REDDR--IMPIINLSRKYGIGTQL 55
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI--SADEDQ-ASLWVALDEVTDPQN 408
S+ L+ HQG++ P + ++D I +A++ A ++ LD VTDP N
Sbjct: 56 ASRKALDEKSEGEQHQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHN 115
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G +++ N+A ++ V K + G++E + L N+ + + + G
Sbjct: 116 LGACLRNADAAGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQG 175
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
W V G+ L ++ P LV+G+EG G+R L +C LV++P
Sbjct: 176 VWIV--GTAGETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLP 224
>TIGR_CMR|CPS_4616 [details] [associations]
symbol:CPS_4616 "RNA methyltransferase, TrmH family, group
3" species:167879 "Colwellia psychrerythraea 34H" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008649 eggNOG:COG0566 OMA:IMGAEGK
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 ProtClustDB:PRK11181 GO:GO:0070039
RefSeq:YP_271263.1 ProteinModelPortal:Q47VA9 SMR:Q47VA9
STRING:Q47VA9 GeneID:3522591 KEGG:cps:CPS_4616 PATRIC:21472055
BioCyc:CPSY167879:GI48-4625-MONOMER GO:GO:0000451 Uniprot:Q47VA9
Length = 251
Score = 209 (78.6 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 59/231 (25%), Positives = 113/231 (48%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++G+ V A ++A F +++ +G ++ D+ ++ ++ GI +
Sbjct: 6 ELVFGIHAVNALINAAPERFIEIWLLKG--------REDDR--IMPIINLSRKYGIGTQL 55
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI--SADEDQ-ASLWVALDEVTDPQN 408
S+ L+ HQG++ P + ++D I +A++ A ++ LD VTDP N
Sbjct: 56 ASRKALDEKSEGEQHQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHN 115
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G +++ N+A ++ V K + G++E + L N+ + + + G
Sbjct: 116 LGACLRNADAAGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQG 175
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
W V G+ L ++ P LV+G+EG G+R L +C LV++P
Sbjct: 176 VWIV--GTAGETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLP 224
>UNIPROTKB|G4NEV6 [details] [associations]
symbol:MGG_00735 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:CM001235 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 KO:K15507 TIGRFAMs:TIGR00186 RefSeq:XP_003718266.1
ProteinModelPortal:G4NEV6 EnsemblFungi:MGG_00735T0 GeneID:2674651
KEGG:mgr:MGG_00735 Uniprot:G4NEV6
Length = 616
Score = 222 (83.2 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 93/327 (28%), Positives = 145/327 (44%)
Query: 272 NSGRTTWKEAAPSTVP--KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSN-NRK 328
N G + +++P + LYG V L + R+ Y LY+ +GL+ S N N
Sbjct: 282 NRGYADHLDPTVTSIPYTTAASQFLYGRSVVEETLRSSRRKLYHLYIYDGLNRSRNPNDV 341
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
+K ++ +K+ + +G E + ++ + RPH VL+ASP+ I+ L P+S
Sbjct: 342 VIEKLAQKRGVKITK-LG----EGHQRLMSKMSEGRPHNNFVLEASPVPQPPIEALGPLS 396
Query: 389 ---------------ADED----------------QASLWVALDEVTDPQNLGAIIRSAY 417
ED L + LD + DP NLG I+R+A
Sbjct: 397 EVASRPGFEVSLGHQTAEDLEINGSSNFVETEGGKHQPLVLLLDRILDPGNLGNILRTAS 456
Query: 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVS 477
F G S VV+ +NSA L+ V KA++G+ E + L C+N FL +S E+GW++
Sbjct: 457 FLGVSAVVISQRNSATLTPVALKAAAGASETLPLFACDNPASFLHNSKESGWKIYAAVAP 516
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN-IPVDVTAGEIDDVDAD 536
S++ +E Q V E L PL C +V G +P + V
Sbjct: 517 SRSRKKSE----QD---VYDIED--LDPLATDPCVLVVGSEGEGLPTMIKTKSHHAVTIP 567
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVL 563
+ G+ ++SLNVSVAAG+L
Sbjct: 568 NSSGAH-------TIDSLNVSVAAGLL 587
>TIGR_CMR|NSE_0262 [details] [associations]
symbol:NSE_0262 "RNA methyltransferase, TrmH family, group
3" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0008173 "RNA methyltransferase activity" evidence=ISS]
[GO:0009451 "RNA modification" evidence=ISS] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0003723 GO:GO:0006396 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218 RefSeq:YP_506155.1
ProteinModelPortal:Q2GEE1 STRING:Q2GEE1 GeneID:3931505
KEGG:nse:NSE_0262 PATRIC:22680615 HOGENOM:HOG000218801 OMA:AKVRPIF
ProtClustDB:CLSK2527754 BioCyc:NSEN222891:GHFU-291-MONOMER
Uniprot:Q2GEE1
Length = 243
Score = 186 (70.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 330 KDKKG-YEKVLKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPI 387
++KK Y +L+ + IS E ++ + + G HQG+ + L ++++ +
Sbjct: 32 REKKAVYLPLLERSRLPNISFCENTQ--IAKICGRDALHQGIAVVTEKLSQPELRD---V 86
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ SL + LD +TDP N+G I+RS+ FG +V+ ++S + V++K +SG+LE
Sbjct: 87 LKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVDALVVKERHSPSETSVIAKTASGALE 146
Query: 448 LMELRYCNNMMQFLVSSAENGW--RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ + N+ + ENG+ L G SK L EI VLGSEG G+
Sbjct: 147 SIPVCTIANLTNAVKILQENGYFCYALDGGARSK---LTEIRFPNKVAFVLGSEGKGISH 203
Query: 506 LVERSCTHLVRIP 518
L++ C + IP
Sbjct: 204 LLKTRCDQTLSIP 216
>GENEDB_PFALCIPARUM|PFB0855c [details] [associations]
symbol:PFB0855c "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0000027 "ribosomal large
subunit assembly" evidence=ISS] [GO:0008989 "rRNA
(guanine-N1-)-methyltransferase activity" evidence=ISS] [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0003723 GO:GO:0008989
GO:GO:0000027 EMBL:AE001362 RefSeq:XP_001349687.2
ProteinModelPortal:O96263 EnsemblProtists:PFB0855c:mRNA
GeneID:812769 KEGG:pfa:PFB0855c EuPathDB:PlasmoDB:PF3D7_0218200
ProtClustDB:CLSZ2514721 Uniprot:O96263
Length = 354
Score = 195 (73.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 64/264 (24%), Positives = 119/264 (45%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ + +YG+ V A L R + V + + L NRK K+ YE + + +SI
Sbjct: 83 ISDYIYGLNSVYAVLKKNERTIEEVIVNKNIKL---NRKIH-KQNYEYIFDELKKRNVSI 138
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE-LDPISADEDQASLWVALDEVTDPQN 408
+ K+ +N +VG PH +++ M K+ + I ++ ++++ L +V D N
Sbjct: 139 QYMEKYKMNELVGGFPHNDIIMKTHYRYMNNYKDFIKNIKHLPNKNNIFICLHDVYDNMN 198
Query: 409 LGAIIRSAYFFGASGVVLCAK-------NSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
+G + RS +FFG + L K N+ + + +S GS E + + NNM F+
Sbjct: 199 IGNVCRSIFFFGGHTIFLKKKKKVNEKKNNVKIDTPILHSSVGSSEFLNFYHINNMANFM 258
Query: 462 VSSAENGWRVLGGSVSS------KAVPLNEIP--PGQPTILVLGSEGTGLRPLVERSCTH 513
NG+ + S K + LN I + +++LG+E GL+ + + +
Sbjct: 259 NHMKLNGFTIYSTSCHKNNTSCHKYINLNNIKIRENEKILIILGNESKGLKEDILENSDY 318
Query: 514 LVRIPGNIPVDV-TAGEIDDVDAD 536
V I N+ + T ID ++ +
Sbjct: 319 CVYI-NNLSYNENTQFHIDSLNVN 341
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 551 VESLNVSVAAGVLLHH 566
++SLNV+ ++L+H
Sbjct: 335 IDSLNVNNVCSIMLNH 350
>UNIPROTKB|O96263 [details] [associations]
symbol:PFB0855c "Apicoplast RNA methyltransferase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000027
"ribosomal large subunit assembly" evidence=ISS] [GO:0008989 "rRNA
(guanine-N1-)-methyltransferase activity" evidence=ISS] [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0003723 GO:GO:0008989
GO:GO:0000027 EMBL:AE001362 RefSeq:XP_001349687.2
ProteinModelPortal:O96263 EnsemblProtists:PFB0855c:mRNA
GeneID:812769 KEGG:pfa:PFB0855c EuPathDB:PlasmoDB:PF3D7_0218200
ProtClustDB:CLSZ2514721 Uniprot:O96263
Length = 354
Score = 195 (73.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 64/264 (24%), Positives = 119/264 (45%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ + +YG+ V A L R + V + + L NRK K+ YE + + +SI
Sbjct: 83 ISDYIYGLNSVYAVLKKNERTIEEVIVNKNIKL---NRKIH-KQNYEYIFDELKKRNVSI 138
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE-LDPISADEDQASLWVALDEVTDPQN 408
+ K+ +N +VG PH +++ M K+ + I ++ ++++ L +V D N
Sbjct: 139 QYMEKYKMNELVGGFPHNDIIMKTHYRYMNNYKDFIKNIKHLPNKNNIFICLHDVYDNMN 198
Query: 409 LGAIIRSAYFFGASGVVLCAK-------NSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
+G + RS +FFG + L K N+ + + +S GS E + + NNM F+
Sbjct: 199 IGNVCRSIFFFGGHTIFLKKKKKVNEKKNNVKIDTPILHSSVGSSEFLNFYHINNMANFM 258
Query: 462 VSSAENGWRVLGGSVSS------KAVPLNEIP--PGQPTILVLGSEGTGLRPLVERSCTH 513
NG+ + S K + LN I + +++LG+E GL+ + + +
Sbjct: 259 NHMKLNGFTIYSTSCHKNNTSCHKYINLNNIKIRENEKILIILGNESKGLKEDILENSDY 318
Query: 514 LVRIPGNIPVDV-TAGEIDDVDAD 536
V I N+ + T ID ++ +
Sbjct: 319 CVYI-NNLSYNENTQFHIDSLNVN 341
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 551 VESLNVSVAAGVLLHH 566
++SLNV+ ++L+H
Sbjct: 335 IDSLNVNNVCSIMLNH 350
>TIGR_CMR|CJE_0149 [details] [associations]
symbol:CJE_0149 "RNA methyltransferase, TrmH family"
species:195099 "Campylobacter jejuni RM1221" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0003723 GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 TIGRFAMs:TIGR00186
HOGENOM:HOG000218798 KO:K03218 RefSeq:YP_178173.1
ProteinModelPortal:Q5HX12 STRING:Q5HX12 GeneID:3230912
KEGG:cjr:CJE0149 PATRIC:20042005 OMA:DARQPMA ProtClustDB:CLSK872377
BioCyc:CJEJ195099:GJC0-153-MONOMER Uniprot:Q5HX12
Length = 227
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 49/190 (25%), Positives = 81/190 (42%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K+ DK + K+ K G IK+ HQG +LD + E+
Sbjct: 27 KECDKITFSKIAKS----GFKIKKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIK-- 80
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ V L ++D N+GAI R+AY G ++ + A + GV+ +S +L+
Sbjct: 81 -----KNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA-MEGVIRTSSGAALD 134
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
L + N+ + + + G+ S K + +I G+ +LVLGSEG GL +
Sbjct: 135 L-PIAISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK-VLVLGSEGFGLSSKI 192
Query: 508 ERSCTHLVRI 517
+ C V I
Sbjct: 193 IKKCDECVGI 202
>UNIPROTKB|K7EJT9 [details] [associations]
symbol:MRM1 "rRNA methyltransferase 1, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] InterPro:IPR001537
Pfam:PF00588 EMBL:CH471199 GO:GO:0008168 HGNC:HGNC:26202
EMBL:AC003042 Ensembl:ENST00000585770 Uniprot:K7EJT9
Length = 158
Score = 103 (41.3 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 446 LELMELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILV 495
+E+M++ +++ FL + A+ GW V G G S++ +EIP +PT+LV
Sbjct: 1 MEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLV 60
Query: 496 LGSEGTGLRPLVERSCTHLVRI 517
LG+EG+GL V+ SC L+ I
Sbjct: 61 LGNEGSGLSQEVQASCQLLLTI 82
Score = 66 (28.3 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 551 VESLNVSVAAGVLLHHL 567
+ESLNVSVAAG+LLH +
Sbjct: 92 LESLNVSVAAGILLHSI 108
>TIGR_CMR|BA_4805 [details] [associations]
symbol:BA_4805 "RNA methyltransferase, TrmH family"
species:198094 "Bacillus anthracis str. Ames" [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 HSSP:P39290 HOGENOM:HOG000218799 KO:K03437
OMA:AQGSHFH RefSeq:NP_847008.1 RefSeq:YP_021450.1
RefSeq:YP_030704.1 ProteinModelPortal:Q81L29 DNASU:1083938
EnsemblBacteria:EBBACT00000012902 EnsemblBacteria:EBBACT00000014455
EnsemblBacteria:EBBACT00000024420 GeneID:1083938 GeneID:2815769
GeneID:2851594 KEGG:ban:BA_4805 KEGG:bar:GBAA_4805 KEGG:bat:BAS4457
ProtClustDB:CLSK873510 BioCyc:BANT260799:GJAJ-4514-MONOMER
BioCyc:BANT261594:GJ7F-4667-MONOMER Uniprot:Q81L29
Length = 254
Score = 117 (46.2 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
++ LD + DP NLG IIR+A G VVL + V +++ GS+ + + N
Sbjct: 107 FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI-VKGN 165
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLR 504
+ +++ EN V G ++ + VP E+ P L++G+EG G+R
Sbjct: 166 LKEWVDKLKENNVPVYGTALEN-GVPYGEVTPAGSFALIVGNEGNGVR 212
Score = 56 (24.8 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 552 ESLNVSVAAGVLLHHL 567
ESLNV+VAAG+L ++L
Sbjct: 232 ESLNVAVAAGILTYYL 247
>TAIR|locus:2130310 [details] [associations]
symbol:AT4G15520 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001537 Pfam:PF00588 EMBL:CP002687 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 UniGene:At.44851
HSSP:P39290 EMBL:BT004979 EMBL:AK117406 IPI:IPI00545342
RefSeq:NP_193287.1 UniGene:At.66627 ProteinModelPortal:Q8GYT1
STRING:Q8GYT1 PRIDE:Q8GYT1 EnsemblPlants:AT4G15520.1 GeneID:827225
KEGG:ath:AT4G15520 OMA:MFRTADA ProtClustDB:CLSN2685602
Genevestigator:Q8GYT1 Uniprot:Q8GYT1
Length = 222
Score = 101 (40.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+V + + N+G + RSA FG + ++L + G S GS + R+ ++
Sbjct: 7 YVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFG-----SHGSASHIRFRHFHS 61
Query: 457 MMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
+++ E + G ++ A +NE P + T +LG+EG+GL C V
Sbjct: 62 LIEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFV 121
Query: 516 RIP 518
IP
Sbjct: 122 YIP 124
Score = 58 (25.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 553 SLNVSVAAGVLLHHLVGHQVSNNSHIEDSS 582
SLNV+VAA ++LHH G + + D S
Sbjct: 132 SLNVTVAASIVLHHF-GVWAGFSERVRDGS 160
>TAIR|locus:2121075 [details] [associations]
symbol:AT4G38020 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001537 Pfam:PF00588 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 HSSP:P39290 UniGene:At.31211
EMBL:BT024884 EMBL:AK117528 IPI:IPI00535166 RefSeq:NP_195515.2
ProteinModelPortal:Q8GYL4 STRING:Q8GYL4 PaxDb:Q8GYL4 PRIDE:Q8GYL4
EnsemblPlants:AT4G38020.1 GeneID:829958 KEGG:ath:AT4G38020
TAIR:At4g38020 HOGENOM:HOG000218799 InParanoid:Q8GYL4 KO:K03437
OMA:VYIPEGK PhylomeDB:Q8GYL4 ProtClustDB:CLSN2680315
Genevestigator:Q8GYL4 Uniprot:Q8GYL4
Length = 352
Score = 113 (44.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 51/200 (25%), Positives = 86/200 (43%)
Query: 337 KVLKMAENMGISIKETSK---HDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQ 393
K+ + E++ I I S L+ V + + L P +K+ I D ++
Sbjct: 131 KIPQGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDIITDCNK 190
Query: 394 ----ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
A + LD + DP NLG ++RSA F G L P + +AS G+ +
Sbjct: 191 WFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQL 250
Query: 450 ELRYCN-NMMQFLVSSAENGWRVLGG---SVSSKAVPLNEIP-------PGQPTILVLGS 498
+ N N ++ L + + ++L G + + K P++++ +P L+LGS
Sbjct: 251 PIVSGNWNHLKLLENEFQ--MKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGS 308
Query: 499 EGTGLRPLVERSCTHLVRIP 518
EG GL + C LV IP
Sbjct: 309 EGNGLSEQARKVCV-LVSIP 327
Score = 52 (23.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 552 ESLNVSVAAGVLLHHL 567
ESLNVSVA G+ L+ L
Sbjct: 333 ESLNVSVAGGIFLYML 348
>UNIPROTKB|Q9F5K6 [details] [associations]
symbol:aviRb "23S rRNA
(uridine(2479)-2'-O)-methyltransferase" species:1938 "Streptomyces
viridochromogenes" [GO:0008650 "rRNA
(uridine-2'-O-)-methyltransferase activity" evidence=IDA]
[GO:0031167 "rRNA methylation" evidence=IDA] [GO:0032259
"methylation" evidence=IDA] [GO:0046677 "response to antibiotic"
evidence=IDA] InterPro:IPR001537 Pfam:PF00588 GO:GO:0046677
GO:GO:0003723 EMBL:AF333038 PDB:1X7O PDB:1X7P PDBsum:1X7O
PDBsum:1X7P ProteinModelPortal:Q9F5K6 SMR:Q9F5K6
BioCyc:MetaCyc:MONOMER-16328 EvolutionaryTrace:Q9F5K6 GO:GO:0008650
Uniprot:Q9F5K6
Length = 287
Score = 122 (48.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 50/155 (32%), Positives = 78/155 (50%)
Query: 374 SPLEMVKIKE-----LDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+P E+V + E LD I ED L V D T P N+G+IIRSA GA G+++ A
Sbjct: 102 APPEVVAVVEMPADDLDRIPVRED--FLGVLFDRPTSPGNIGSIIRSADALGAHGLIV-A 158
Query: 429 KNSAPLSGVVS-KASSGSL-ELMELRYCN--NMMQFLVSSAENGWR-VLGGSVSSKAVPL 483
++A + S ++S+GSL L +R + +M ++ + G VL G+ +
Sbjct: 159 GHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDV 218
Query: 484 NEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ QPT+L++G+E GL C + V IP
Sbjct: 219 FDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIP 253
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 550 AVESLNVSVAAGVLLHHLVGHQVSNNS 576
+ SLN + AA +L+ V ++S +
Sbjct: 257 SASSLNAANAATAILYEAVRQRISGRT 283
>UNIPROTKB|Q9KTT5 [details] [associations]
symbol:VC_0803 "RNA methyltransferase, TrmH family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] InterPro:IPR001537
Pfam:PF00588 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 HSSP:P39290 KO:K03437
PIR:E82278 RefSeq:NP_230452.1 ProteinModelPortal:Q9KTT5
DNASU:2615346 GeneID:2615346 KEGG:vch:VC0803 PATRIC:20080715
OMA:WYGIKHI ProtClustDB:CLSK874114 Uniprot:Q9KTT5
Length = 257
Score = 108 (43.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 40/150 (26%), Positives = 72/150 (48%)
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
LV + + + +V I ++ A L +ALD V+DP NLG IIR A ++G S ++
Sbjct: 92 LVSNNAAIAVVAIPHIEVPKAQ----GLMIALDGVSDPGNLGTIIRVADWYGISHIIASQ 147
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+ P + A+ GS +++ + + +L A+ V G + + V +++
Sbjct: 148 DCADPYNPKTISATMGSFGRVQVSQVD-LPDYL---AKANLPVYGAFL--EGVSVHQTAF 201
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
IL++GSE G+R + T + IP
Sbjct: 202 QAEGILLMGSESHGIREQAAQYVTDKITIP 231
Score = 50 (22.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 547 SFMAVESLNVSVAAGVLLHHL 567
+F ESLNV++A G++L ++
Sbjct: 232 AFGGAESLNVAMATGIILDNI 252
>TIGR_CMR|VC_0803 [details] [associations]
symbol:VC_0803 "RNA methyltransferase, TrmH family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 Pfam:PF00588
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 HSSP:P39290 KO:K03437 PIR:E82278
RefSeq:NP_230452.1 ProteinModelPortal:Q9KTT5 DNASU:2615346
GeneID:2615346 KEGG:vch:VC0803 PATRIC:20080715 OMA:WYGIKHI
ProtClustDB:CLSK874114 Uniprot:Q9KTT5
Length = 257
Score = 108 (43.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 40/150 (26%), Positives = 72/150 (48%)
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
LV + + + +V I ++ A L +ALD V+DP NLG IIR A ++G S ++
Sbjct: 92 LVSNNAAIAVVAIPHIEVPKAQ----GLMIALDGVSDPGNLGTIIRVADWYGISHIIASQ 147
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+ P + A+ GS +++ + + +L A+ V G + + V +++
Sbjct: 148 DCADPYNPKTISATMGSFGRVQVSQVD-LPDYL---AKANLPVYGAFL--EGVSVHQTAF 201
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
IL++GSE G+R + T + IP
Sbjct: 202 QAEGILLMGSESHGIREQAAQYVTDKITIP 231
Score = 50 (22.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 547 SFMAVESLNVSVAAGVLLHHL 567
+F ESLNV++A G++L ++
Sbjct: 232 AFGGAESLNVAMATGIILDNI 252
>UNIPROTKB|P0AGJ5 [details] [associations]
symbol:yfiF "predicted methyltransferase" species:83333
"Escherichia coli K-12" [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] [GO:0001510 "RNA methylation" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] InterPro:IPR001537
InterPro:IPR013123 InterPro:IPR016479 Pfam:PF00588 Pfam:PF08032
PIRSF:PIRSF006280 SMART:SM00967 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 EMBL:D13169 EMBL:J03725
eggNOG:COG0566 PIR:D65036 RefSeq:NP_417076.1 RefSeq:YP_490809.1
ProteinModelPortal:P0AGJ5 SMR:P0AGJ5 DIP:DIP-47835N IntAct:P0AGJ5
MINT:MINT-1218417 PaxDb:P0AGJ5 PRIDE:P0AGJ5
EnsemblBacteria:EBESCT00000003960 EnsemblBacteria:EBESCT00000017378
GeneID:12934479 GeneID:947066 KEGG:ecj:Y75_p2534 KEGG:eco:b2581
PATRIC:32120563 EchoBASE:EB1734 EcoGene:EG11786
HOGENOM:HOG000218800 KO:K03214 OMA:IVRLWAT ProtClustDB:PRK10864
BioCyc:EcoCyc:EG11786-MONOMER BioCyc:ECOL316407:JW2565-MONOMER
Genevestigator:P0AGJ5 Uniprot:P0AGJ5
Length = 345
Score = 114 (45.2 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 40/124 (32%), Positives = 64/124 (51%)
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPL-SGVVSKASSGSLELMELRYCNN 456
+AL+ ++P NLG ++RS FG GVV+ +++A L SG + + G E ++ +N
Sbjct: 200 LALENESNPHNLGGMMRSCAHFGVKGVVV--QDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL-V 515
++ L + G+ V+ S S + PL + +LVLG E GL P R L V
Sbjct: 258 IVNVLDDFRQAGYTVVTTS-SEQGKPLFKTSLPAKMVLVLGQEYEGL-PDAARDPNDLRV 315
Query: 516 RIPG 519
+I G
Sbjct: 316 KIDG 319
Score = 46 (21.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 551 VESLNVSVAAGVLL 564
V LN+SVA GVLL
Sbjct: 323 VAGLNISVATGVLL 336
>UNIPROTKB|P0AGJ2 [details] [associations]
symbol:trmH species:83333 "Escherichia coli K-12"
[GO:0009020 "tRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IEA;IMP] [GO:0030488 "tRNA methylation" evidence=TAS]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588
Pfam:PF12105 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
EMBL:L10328 eggNOG:COG0566 EMBL:M24503 GO:GO:0009020 PIR:JV0043
RefSeq:NP_418108.1 RefSeq:YP_491783.1 ProteinModelPortal:P0AGJ2
SMR:P0AGJ2 DIP:DIP-35977N IntAct:P0AGJ2 PRIDE:P0AGJ2
EnsemblBacteria:EBESCT00000003689 EnsemblBacteria:EBESCT00000016548
GeneID:12933575 GeneID:948161 KEGG:ecj:Y75_p3523 KEGG:eco:b3651
PATRIC:32122789 EchoBASE:EB0960 EcoGene:EG10967
HOGENOM:HOG000285175 KO:K00556 OMA:VHAVWPT ProtClustDB:PRK11081
BioCyc:EcoCyc:EG10967-MONOMER BioCyc:ECOL316407:JW3626-MONOMER
BioCyc:MetaCyc:EG10967-MONOMER Genevestigator:P0AGJ2 Uniprot:P0AGJ2
Length = 229
Score = 103 (41.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR 452
Q L V +++V P N+ AIIR+A G V S + ++ A++GS ++++
Sbjct: 17 QPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRT--MASAAAGSNSWVQVK 74
Query: 453 YCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
+ + G ++L +S AV EI +PT +++G E TG+
Sbjct: 75 THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGI 125
Score = 49 (22.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 551 VESLNVSVAAGVLLHHLVGHQVSNNSHIEDSS 582
V+SLNVSVA+ ++L+ + + ++ ++S
Sbjct: 145 VQSLNVSVASALILYEAQRQRQNAGMYLRENS 176
>DICTYBASE|DDB_G0275919 [details] [associations]
symbol:DDB_G0275919 "tRNA/rRNA methyltransferase SpoU
family protein" species:44689 "Dictyostelium discoideum"
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001510 "RNA methylation" evidence=IEA]
InterPro:IPR001537 Pfam:PF00588 dictyBase:DDB_G0275919
GO:GO:0003723 EMBL:AAFI02000013 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 RefSeq:XP_643609.1
ProteinModelPortal:Q552S2 EnsemblProtists:DDB0217723 GeneID:8620196
KEGG:ddi:DDB_G0275919 InParanoid:Q552S2 Uniprot:Q552S2
Length = 787
Score = 106 (42.4 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 41/136 (30%), Positives = 62/136 (45%)
Query: 361 VGNRPHQGLVLDASPLEMVKIKELDPI---SADEDQASLWVALDEVTDPQNLGAIIRSAY 417
+ N P V S E K K L+ I S + + LD + +PQN+GAIIRSA
Sbjct: 470 LSNSPFTNKVHSFSS-EFSKSKILNQIKFNSLGSGSKPVVLLLDGIENPQNIGAIIRSAV 528
Query: 418 FFGASGVVLC----AKNSA--PLSGVVSKASSGSLE---LMELRYCNNMMQFLVSSAENG 468
FG V+ K + P S ++S G++E + +L + + L ENG
Sbjct: 529 LFGVESVIFVNEFDKKTGSINPYSAESYRSSRGAVEYCNISQLYLRRDAAEVLDEFVENG 588
Query: 469 WRVLGGSVSSKAVPLN 484
W V+ + S+K + N
Sbjct: 589 WEVVT-TASNKLIDDN 603
Score = 61 (26.5 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPG 519
+P +LVLGSE G+ + + T + IPG
Sbjct: 636 KPIVLVLGSETKGISRTISKKSTVSISIPG 665
Score = 42 (19.8 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 551 VESLNVSVAAGVLL 564
+ESLNVS A+ ++L
Sbjct: 669 IESLNVSQASSIIL 682
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 587 552 0.00097 119 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 617 (66 KB)
Total size of DFA: 285 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.73u 0.14s 45.87t Elapsed: 00:00:03
Total cpu time: 45.74u 0.15s 45.89t Elapsed: 00:00:03
Start: Fri May 10 23:19:19 2013 End: Fri May 10 23:19:22 2013